Query 013884
Match_columns 434
No_of_seqs 387 out of 2225
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 18:55:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013884.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013884hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ow8_A WD repeat-containing pr 100.0 1E-32 3.6E-37 262.7 37.7 274 2-314 35-319 (321)
2 1vyh_C Platelet-activating fac 100.0 3.8E-33 1.3E-37 274.9 33.7 272 2-314 111-409 (410)
3 1got_B GT-beta; complex (GTP-b 100.0 1.9E-32 6.6E-37 262.8 37.7 271 2-313 58-340 (340)
4 4g56_B MGC81050 protein; prote 100.0 3.1E-33 1.1E-37 270.4 28.4 285 2-316 45-343 (357)
5 3iz6_a 40S ribosomal protein R 100.0 1.4E-32 4.9E-37 267.9 32.6 278 2-317 69-376 (380)
6 2pbi_B Guanine nucleotide-bind 100.0 2E-31 6.7E-36 257.4 39.5 272 2-313 67-354 (354)
7 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.1E-31 3.7E-36 258.2 34.3 284 2-318 19-337 (345)
8 1nr0_A Actin interacting prote 100.0 1.1E-31 3.6E-36 278.0 35.8 306 2-343 62-510 (611)
9 4gqb_B Methylosome protein 50; 100.0 4.8E-32 1.6E-36 260.7 30.1 275 2-318 33-333 (344)
10 2ynn_A Coatomer subunit beta'; 100.0 4.4E-31 1.5E-35 249.3 35.7 276 2-316 16-302 (304)
11 2ymu_A WD-40 repeat protein; u 100.0 4.6E-31 1.6E-35 270.4 38.4 297 2-343 265-568 (577)
12 1nr0_A Actin interacting prote 100.0 8.2E-31 2.8E-35 271.3 38.8 296 2-336 21-379 (611)
13 3zwl_B Eukaryotic translation 100.0 8.1E-30 2.8E-34 245.0 39.6 286 2-317 35-347 (369)
14 1erj_A Transcriptional repress 100.0 2.4E-30 8.3E-35 253.2 36.4 283 2-316 67-389 (393)
15 4ery_A WD repeat-containing pr 100.0 8E-30 2.7E-34 241.0 37.5 275 2-315 26-311 (312)
16 3frx_A Guanine nucleotide-bind 100.0 6.3E-30 2.2E-34 243.1 36.3 273 2-315 20-316 (319)
17 1gxr_A ESG1, transducin-like e 100.0 1E-29 3.4E-34 241.5 34.9 273 2-314 54-335 (337)
18 2ymu_A WD-40 repeat protein; u 100.0 1.6E-29 5.5E-34 258.9 37.7 297 2-343 224-527 (577)
19 1r5m_A SIR4-interacting protei 100.0 1.1E-29 3.8E-34 248.9 33.6 301 2-342 48-412 (425)
20 4aow_A Guanine nucleotide-bind 100.0 9.8E-29 3.3E-33 235.3 37.4 276 2-315 41-336 (340)
21 1gxr_A ESG1, transducin-like e 100.0 5.8E-29 2E-33 236.2 35.1 301 2-342 12-324 (337)
22 1r5m_A SIR4-interacting protei 100.0 2E-29 6.7E-34 247.1 32.6 272 2-316 111-425 (425)
23 4h5i_A Guanine nucleotide-exch 100.0 5.3E-29 1.8E-33 241.4 34.3 282 2-316 17-343 (365)
24 2pm9_A Protein WEB1, protein t 100.0 2.5E-30 8.4E-35 253.6 24.1 284 2-317 15-338 (416)
25 4gga_A P55CDC, cell division c 100.0 2.8E-28 9.7E-33 240.6 38.3 280 2-316 108-395 (420)
26 2xzm_R RACK1; ribosome, transl 100.0 1.2E-28 4E-33 236.6 33.8 272 2-315 24-339 (343)
27 2hes_X YDR267CP; beta-propelle 100.0 2.8E-28 9.6E-33 232.9 35.1 278 2-316 17-328 (330)
28 2pm9_A Protein WEB1, protein t 100.0 1.3E-29 4.5E-34 248.4 23.2 279 2-316 70-414 (416)
29 4ggc_A P55CDC, cell division c 100.0 1.9E-27 6.6E-32 224.2 37.0 278 3-315 29-314 (318)
30 3ei3_B DNA damage-binding prot 100.0 4.3E-28 1.5E-32 235.7 32.2 275 2-316 76-382 (383)
31 3ow8_A WD repeat-containing pr 100.0 4.5E-28 1.5E-32 230.7 30.8 264 48-343 31-309 (321)
32 2ynn_A Coatomer subunit beta'; 100.0 1.4E-27 4.7E-32 225.3 33.9 265 39-338 6-284 (304)
33 3dm0_A Maltose-binding peripla 100.0 6.7E-28 2.3E-32 253.1 34.8 275 1-315 384-692 (694)
34 3vl1_A 26S proteasome regulato 100.0 1.6E-29 5.5E-34 248.4 20.5 304 2-337 59-398 (420)
35 3sfz_A APAF-1, apoptotic pepti 100.0 1.3E-27 4.5E-32 266.2 37.1 306 2-336 618-1056(1249)
36 3i2n_A WD repeat-containing pr 100.0 1.6E-27 5.3E-32 228.4 31.6 280 2-316 21-353 (357)
37 4aez_A CDC20, WD repeat-contai 100.0 3.7E-27 1.3E-31 231.1 34.2 277 3-317 97-381 (401)
38 1sq9_A Antiviral protein SKI8; 100.0 3.5E-27 1.2E-31 229.8 32.9 274 2-316 19-395 (397)
39 4e54_B DNA damage-binding prot 100.0 6.7E-28 2.3E-32 239.1 27.8 281 2-316 122-430 (435)
40 3mkq_A Coatomer beta'-subunit; 100.0 2.8E-27 9.5E-32 252.1 34.2 274 2-314 16-300 (814)
41 1got_B GT-beta; complex (GTP-b 100.0 1.3E-26 4.3E-31 222.2 34.6 273 37-342 46-330 (340)
42 3odt_A Protein DOA1; ubiquitin 100.0 1.4E-26 4.7E-31 217.6 34.0 267 2-317 21-297 (313)
43 1k8k_C P40, ARP2/3 complex 41 100.0 2.1E-27 7.3E-32 228.9 29.1 274 2-315 11-360 (372)
44 1vyh_C Platelet-activating fac 100.0 4.8E-27 1.7E-31 231.2 32.0 263 48-342 107-398 (410)
45 4gqb_B Methylosome protein 50; 100.0 2.2E-27 7.7E-32 228.0 28.7 276 27-341 15-316 (344)
46 3k26_A Polycomb protein EED; W 100.0 1.7E-27 6E-32 228.6 27.9 276 2-315 21-365 (366)
47 2pbi_B Guanine nucleotide-bind 100.0 7.5E-26 2.6E-30 218.2 36.5 274 37-342 55-344 (354)
48 3iz6_a 40S ribosomal protein R 100.0 2.6E-27 8.7E-32 230.7 25.9 290 26-343 46-363 (380)
49 2oaj_A Protein SNI1; WD40 repe 100.0 5.5E-27 1.9E-31 252.3 31.0 316 2-342 61-648 (902)
50 4a11_B DNA excision repair pro 100.0 2.5E-26 8.6E-31 223.9 32.1 281 2-318 46-367 (408)
51 3sfz_A APAF-1, apoptotic pepti 100.0 6.3E-27 2.1E-31 260.8 30.7 314 2-343 746-1197(1249)
52 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.9E-26 6.4E-31 221.6 29.9 275 37-341 6-320 (345)
53 4g56_B MGC81050 protein; prote 100.0 4.6E-27 1.6E-31 227.0 25.7 292 5-342 11-330 (357)
54 3dw8_B Serine/threonine-protei 100.0 2.5E-26 8.4E-31 227.4 31.0 273 2-313 31-443 (447)
55 2pm7_B Protein transport prote 100.0 4.5E-26 1.5E-30 214.2 29.9 236 2-315 12-284 (297)
56 3dwl_C Actin-related protein 2 100.0 1.3E-27 4.3E-32 231.7 19.4 238 2-269 14-280 (377)
57 3bws_A Protein LP49; two-domai 100.0 1.1E-25 3.7E-30 222.1 33.3 290 2-316 125-432 (433)
58 4ery_A WD repeat-containing pr 100.0 3.8E-25 1.3E-29 208.8 34.3 263 48-342 22-297 (312)
59 3mmy_A MRNA export factor; mRN 100.0 4.7E-26 1.6E-30 218.6 28.5 262 2-299 42-335 (368)
60 1erj_A Transcriptional repress 100.0 2E-25 6.8E-30 218.3 33.1 254 49-335 64-363 (393)
61 2hqs_A Protein TOLB; TOLB, PAL 100.0 2.2E-25 7.5E-30 219.7 33.4 305 3-336 66-409 (415)
62 1pgu_A Actin interacting prote 100.0 2.8E-25 9.5E-30 228.6 35.5 292 2-335 21-349 (615)
63 1pgu_A Actin interacting prote 100.0 7.2E-25 2.5E-29 225.5 38.3 305 2-342 163-601 (615)
64 2j04_B YDR362CP, TAU91; beta p 99.9 1.7E-26 5.7E-31 233.7 24.8 284 2-320 136-521 (524)
65 2xzm_R RACK1; ribosome, transl 99.9 2.2E-25 7.5E-30 213.8 31.0 270 38-343 13-328 (343)
66 3vl1_A 26S proteasome regulato 99.9 1.1E-25 3.6E-30 221.2 29.4 273 3-316 101-419 (420)
67 3bg1_A Protein SEC13 homolog; 99.9 4.8E-26 1.6E-30 216.0 25.0 252 2-315 16-292 (316)
68 3v7d_B Cell division control p 99.9 1.6E-24 5.3E-29 216.0 35.5 288 2-333 125-442 (464)
69 3frx_A Guanine nucleotide-bind 99.9 3E-24 1E-28 203.9 34.8 267 40-343 11-305 (319)
70 1yfq_A Cell cycle arrest prote 99.9 7.3E-25 2.5E-29 208.8 30.3 268 2-313 14-321 (342)
71 3zwl_B Eukaryotic translation 99.9 3.5E-24 1.2E-28 205.6 34.8 270 48-343 31-334 (369)
72 2oaj_A Protein SNI1; WD40 repe 99.9 1.6E-25 5.3E-30 241.1 28.1 220 2-256 20-296 (902)
73 1l0q_A Surface layer protein; 99.9 7.4E-24 2.5E-28 206.1 37.1 272 13-321 4-281 (391)
74 3f3f_A Nucleoporin SEH1; struc 99.9 5.9E-25 2E-29 208.6 28.4 280 2-316 14-337 (351)
75 3gre_A Serine/threonine-protei 99.9 9.1E-26 3.1E-30 223.2 22.5 274 2-313 66-437 (437)
76 2aq5_A Coronin-1A; WD40 repeat 99.9 1.2E-24 4E-29 213.1 29.6 276 3-319 38-345 (402)
77 3mkq_A Coatomer beta'-subunit; 99.9 2.2E-24 7.5E-29 229.8 33.0 298 2-342 58-410 (814)
78 4aez_A CDC20, WD repeat-contai 99.9 1.6E-24 5.5E-29 212.2 29.3 244 2-277 137-387 (401)
79 1k8k_C P40, ARP2/3 complex 41 99.9 2.6E-24 9E-29 207.2 29.9 237 49-316 8-274 (372)
80 3jrp_A Fusion protein of prote 99.9 1.1E-24 3.8E-29 210.0 27.2 236 2-315 14-286 (379)
81 2hes_X YDR267CP; beta-propelle 99.9 6.3E-24 2.2E-28 202.6 31.0 275 35-342 3-315 (330)
82 2vdu_B TRNA (guanine-N(7)-)-me 99.9 2.3E-23 7.8E-28 207.3 35.7 284 2-315 7-390 (450)
83 3vu4_A KMHSV2; beta-propeller 99.9 1.6E-23 5.5E-28 202.0 32.8 265 2-315 22-335 (355)
84 4aow_A Guanine nucleotide-bind 99.9 2.1E-23 7.2E-28 198.3 33.2 283 27-343 17-325 (340)
85 3dw8_B Serine/threonine-protei 99.9 9.8E-25 3.3E-29 215.9 24.4 243 50-317 29-374 (447)
86 3vu4_A KMHSV2; beta-propeller 99.9 6.8E-24 2.3E-28 204.6 29.5 245 30-316 3-271 (355)
87 2ecf_A Dipeptidyl peptidase IV 99.9 1.5E-23 5.1E-28 221.3 34.5 314 2-341 39-441 (741)
88 4h5i_A Guanine nucleotide-exch 99.9 1.1E-23 3.7E-28 204.0 28.1 201 2-269 136-342 (365)
89 3ei3_B DNA damage-binding prot 99.9 5.2E-24 1.8E-28 206.8 24.9 277 30-342 57-370 (383)
90 3dm0_A Maltose-binding peripla 99.9 2.1E-23 7.3E-28 218.8 31.2 265 48-343 381-681 (694)
91 4gga_A P55CDC, cell division c 99.9 2.5E-23 8.5E-28 205.1 29.3 242 2-272 150-397 (420)
92 2xyi_A Probable histone-bindin 99.9 3.7E-23 1.3E-27 204.6 30.2 246 49-320 128-414 (430)
93 2j04_A TAU60, YPL007P, hypothe 99.9 2.5E-24 8.5E-29 214.4 21.5 250 2-314 18-295 (588)
94 2ovr_B FBW7, F-BOX/WD repeat p 99.9 2.5E-22 8.6E-27 199.2 35.2 283 6-341 124-424 (445)
95 1sq9_A Antiviral protein SKI8; 99.9 1E-22 3.5E-27 198.1 31.4 260 48-337 15-367 (397)
96 1p22_A F-BOX/WD-repeat protein 99.9 6.1E-23 2.1E-27 203.2 30.0 260 6-317 138-415 (435)
97 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.2E-22 4.1E-27 202.0 32.3 253 51-335 6-365 (450)
98 3i2n_A WD repeat-containing pr 99.9 8.8E-23 3E-27 195.2 27.9 262 48-340 17-337 (357)
99 1xfd_A DIP, dipeptidyl aminope 99.9 2E-23 6.7E-28 219.7 25.5 312 2-340 19-425 (723)
100 3dwl_C Actin-related protein 2 99.9 4.5E-24 1.6E-28 206.5 18.0 238 50-315 12-280 (377)
101 1l0q_A Surface layer protein; 99.9 1.6E-21 5.6E-26 189.5 36.2 246 2-280 34-285 (391)
102 3odt_A Protein DOA1; ubiquitin 99.9 6.3E-22 2.2E-26 185.6 31.8 262 37-337 9-279 (313)
103 3bws_A Protein LP49; two-domai 99.9 6.6E-22 2.3E-26 194.9 33.2 313 3-342 64-418 (433)
104 4ggc_A P55CDC, cell division c 99.9 5.2E-22 1.8E-26 186.8 30.4 241 2-271 70-316 (318)
105 2xyi_A Probable histone-bindin 99.9 2.5E-22 8.4E-27 198.7 28.8 241 2-270 131-410 (430)
106 3gre_A Serine/threonine-protei 99.9 3.9E-23 1.3E-27 204.3 22.8 266 6-316 34-359 (437)
107 4gq1_A NUP37; propeller, trans 99.9 7E-24 2.4E-28 207.4 17.0 260 4-316 94-389 (393)
108 4e54_B DNA damage-binding prot 99.9 3.6E-23 1.2E-27 204.9 22.1 268 50-342 120-418 (435)
109 3u4y_A Uncharacterized protein 99.9 5.9E-21 2E-25 181.2 36.3 284 5-320 3-308 (331)
110 3k26_A Polycomb protein EED; W 99.9 6.3E-23 2.2E-27 196.7 21.6 235 2-270 72-366 (366)
111 2ovr_B FBW7, F-BOX/WD repeat p 99.9 4E-21 1.4E-25 190.5 35.1 264 2-317 162-443 (445)
112 2aq5_A Coronin-1A; WD40 repeat 99.9 9.5E-23 3.2E-27 199.5 23.0 239 2-272 84-344 (402)
113 3lrv_A PRE-mRNA-splicing facto 99.9 3.2E-22 1.1E-26 191.6 25.8 266 6-318 43-335 (343)
114 2j04_B YDR362CP, TAU91; beta p 99.9 1.3E-22 4.3E-27 205.3 24.1 259 50-337 134-456 (524)
115 3jro_A Fusion protein of prote 99.9 4.8E-23 1.7E-27 218.1 21.8 236 2-315 12-284 (753)
116 1yfq_A Cell cycle arrest prote 99.9 4.8E-22 1.6E-26 189.2 25.6 260 48-343 10-311 (342)
117 3pe7_A Oligogalacturonate lyas 99.9 9.2E-22 3.1E-26 191.0 28.0 291 4-315 40-381 (388)
118 2j04_A TAU60, YPL007P, hypothe 99.9 2.6E-23 8.9E-28 207.1 16.6 246 2-300 88-351 (588)
119 2z3z_A Dipeptidyl aminopeptida 99.9 5.2E-21 1.8E-25 200.9 34.9 291 2-318 84-437 (706)
120 3v7d_B Cell division control p 99.9 5.7E-21 2E-25 190.2 33.2 255 2-299 165-451 (464)
121 2ojh_A Uncharacterized protein 99.9 5.9E-21 2E-25 176.9 29.5 256 23-300 19-292 (297)
122 4a11_B DNA excision repair pro 99.9 2.8E-21 9.4E-26 188.1 28.6 273 2-315 102-404 (408)
123 1xfd_A DIP, dipeptidyl aminope 99.9 2.8E-21 9.6E-26 203.3 30.2 287 2-301 63-431 (723)
124 3vgz_A Uncharacterized protein 99.9 1.1E-19 3.8E-24 173.6 36.9 272 2-299 43-333 (353)
125 1nir_A Nitrite reductase; hemo 99.9 2.1E-20 7.3E-25 190.1 33.7 290 2-323 181-522 (543)
126 1nir_A Nitrite reductase; hemo 99.9 5.2E-21 1.8E-25 194.7 29.1 302 6-341 144-495 (543)
127 2ecf_A Dipeptidyl peptidase IV 99.9 4.2E-21 1.5E-25 202.5 27.8 291 2-319 111-462 (741)
128 2pm7_B Protein transport prote 99.9 1.2E-20 4E-25 177.1 27.3 227 88-343 7-273 (297)
129 1ri6_A Putative isomerase YBHE 99.9 2.3E-19 7.7E-24 170.4 34.7 294 10-336 3-334 (343)
130 2w18_A PALB2, fancn, partner a 99.9 2.8E-20 9.5E-25 174.6 27.6 258 25-314 62-355 (356)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 9.2E-20 3.2E-24 179.4 31.1 260 10-292 142-410 (415)
132 2z3z_A Dipeptidyl aminopeptida 99.9 8.4E-20 2.9E-24 191.6 31.2 314 2-341 28-417 (706)
133 3o4h_A Acylamino-acid-releasin 99.9 2.2E-20 7.4E-25 191.9 25.4 271 2-316 24-315 (582)
134 3mmy_A MRNA export factor; mRN 99.9 5.5E-20 1.9E-24 176.1 25.7 274 31-343 24-334 (368)
135 1k32_A Tricorn protease; prote 99.9 9.1E-20 3.1E-24 199.8 30.1 308 2-342 109-489 (1045)
136 4a5s_A Dipeptidyl peptidase 4 99.9 2E-19 6.9E-24 190.0 31.3 317 3-340 20-431 (740)
137 1pby_B Quinohemoprotein amine 99.9 3.8E-19 1.3E-23 168.4 29.8 268 12-321 2-316 (337)
138 1k32_A Tricorn protease; prote 99.9 1.1E-19 3.7E-24 199.2 29.1 291 2-339 206-525 (1045)
139 3bg1_A Protein SEC13 homolog; 99.8 3.2E-20 1.1E-24 175.8 19.5 227 87-342 10-280 (316)
140 1z68_A Fibroblast activation p 99.8 1.3E-19 4.4E-24 190.7 25.5 316 4-340 20-425 (719)
141 3jrp_A Fusion protein of prote 99.8 3.3E-19 1.1E-23 171.5 25.9 228 85-342 6-274 (379)
142 3scy_A Hypothetical bacterial 99.8 3.1E-17 1.1E-21 157.7 39.4 301 6-333 8-360 (361)
143 2ojh_A Uncharacterized protein 99.8 2.6E-19 9E-24 165.7 22.9 230 2-258 44-293 (297)
144 3c5m_A Oligogalacturonate lyas 99.8 2.2E-19 7.5E-24 174.3 23.1 291 2-314 38-380 (396)
145 3lrv_A PRE-mRNA-splicing facto 99.8 1E-19 3.5E-24 174.2 20.2 243 56-334 43-309 (343)
146 1jmx_B Amine dehydrogenase; ox 99.8 4.5E-18 1.5E-22 162.0 31.6 276 3-321 3-331 (349)
147 3hfq_A Uncharacterized protein 99.8 3.9E-17 1.3E-21 156.1 37.3 264 24-315 14-316 (347)
148 1z68_A Fibroblast activation p 99.8 5.1E-19 1.7E-23 186.1 24.1 296 2-317 62-445 (719)
149 3u4y_A Uncharacterized protein 99.8 1E-17 3.5E-22 158.8 29.0 238 4-272 44-306 (331)
150 3vgz_A Uncharacterized protein 99.8 1.5E-17 5E-22 158.8 30.1 261 53-342 44-331 (353)
151 1p22_A F-BOX/WD-repeat protein 99.8 1.6E-17 5.5E-22 164.1 30.3 247 50-342 134-401 (435)
152 3pe7_A Oligogalacturonate lyas 99.8 3E-18 1E-22 166.2 24.0 302 30-341 14-367 (388)
153 1pby_B Quinohemoprotein amine 99.8 2.2E-17 7.4E-22 156.2 27.6 252 2-280 36-320 (337)
154 3hfq_A Uncharacterized protein 99.8 1.5E-16 5.3E-21 151.9 33.5 247 2-274 42-323 (347)
155 1ri6_A Putative isomerase YBHE 99.8 3.2E-17 1.1E-21 155.5 28.3 260 2-291 40-334 (343)
156 3f3f_A Nucleoporin SEH1; struc 99.8 1.9E-17 6.5E-22 156.6 26.4 204 86-316 7-249 (351)
157 3jro_A Fusion protein of prote 99.8 6.6E-18 2.3E-22 178.7 24.4 227 86-342 5-272 (753)
158 4gq1_A NUP37; propeller, trans 99.8 1.7E-18 5.7E-23 169.1 17.8 212 2-269 139-388 (393)
159 2w18_A PALB2, fancn, partner a 99.8 2.8E-17 9.6E-22 154.2 22.6 215 2-268 114-355 (356)
160 4a5s_A Dipeptidyl peptidase 4 99.8 2.1E-16 7E-21 166.9 31.8 291 4-315 66-448 (740)
161 3o4h_A Acylamino-acid-releasin 99.8 7.8E-18 2.7E-22 172.8 20.0 255 51-341 23-298 (582)
162 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.5E-16 8.6E-21 152.0 29.3 247 2-319 42-344 (365)
163 3c5m_A Oligogalacturonate lyas 99.8 6.5E-17 2.2E-21 156.8 21.8 290 30-341 14-367 (396)
164 3scy_A Hypothetical bacterial 99.7 1.1E-14 3.9E-19 139.7 33.2 261 2-288 52-360 (361)
165 2gop_A Trilobed protease; beta 99.7 7.1E-15 2.4E-19 140.1 29.5 271 2-316 17-331 (347)
166 3azo_A Aminopeptidase; POP fam 99.7 3.7E-15 1.3E-19 155.1 28.4 290 2-314 26-365 (662)
167 1jmx_B Amine dehydrogenase; ox 99.7 4.3E-14 1.5E-18 134.2 29.6 245 2-280 45-335 (349)
168 2xdw_A Prolyl endopeptidase; a 99.7 1.1E-13 3.9E-18 145.2 32.3 292 8-316 80-414 (710)
169 2oit_A Nucleoporin 214KDA; NH2 99.6 5.4E-15 1.8E-19 146.1 18.5 138 193-339 90-255 (434)
170 2oiz_A Aromatic amine dehydrog 99.6 1.4E-13 4.8E-18 132.6 27.7 295 9-337 13-360 (361)
171 2xdw_A Prolyl endopeptidase; a 99.6 1.7E-13 5.8E-18 143.9 30.6 255 2-272 127-416 (710)
172 2oiz_A Aromatic amine dehydrog 99.6 5.5E-13 1.9E-17 128.4 29.9 263 4-292 54-360 (361)
173 1jof_A Carboxy-CIS,CIS-muconat 99.6 4.2E-13 1.4E-17 129.3 27.4 140 195-342 144-327 (365)
174 2oit_A Nucleoporin 214KDA; NH2 99.6 8.6E-14 2.9E-18 137.5 21.0 163 141-316 92-278 (434)
175 1qks_A Cytochrome CD1 nitrite 99.6 1.2E-11 3.9E-16 125.9 37.1 289 2-320 199-543 (567)
176 2gop_A Trilobed protease; beta 99.6 7E-13 2.4E-17 126.2 25.1 236 2-267 61-330 (347)
177 2bkl_A Prolyl endopeptidase; m 99.6 1.1E-12 3.6E-17 137.5 27.9 290 7-316 75-397 (695)
178 2dg1_A DRP35, lactonase; beta 99.6 3.4E-12 1.2E-16 120.8 28.5 270 2-299 8-299 (333)
179 3fvz_A Peptidyl-glycine alpha- 99.5 4.7E-12 1.6E-16 120.1 27.4 254 2-318 26-324 (329)
180 2bkl_A Prolyl endopeptidase; m 99.5 1E-12 3.5E-17 137.6 24.5 250 2-273 123-400 (695)
181 1qks_A Cytochrome CD1 nitrite 99.5 1.6E-11 5.5E-16 124.8 31.7 301 9-342 165-520 (567)
182 1yr2_A Prolyl oligopeptidase; 99.5 6.3E-12 2.2E-16 132.6 29.9 286 7-317 114-442 (741)
183 1yr2_A Prolyl oligopeptidase; 99.5 1.2E-11 4.1E-16 130.4 29.8 253 2-273 165-444 (741)
184 3azo_A Aminopeptidase; POP fam 99.5 1.6E-12 5.4E-17 135.2 22.0 250 4-276 81-375 (662)
185 3iuj_A Prolyl endopeptidase; h 99.5 1.6E-11 5.3E-16 128.6 29.3 250 2-273 131-408 (693)
186 1q7f_A NHL, brain tumor CG1071 99.5 2.1E-11 7.3E-16 112.7 26.5 230 2-316 32-280 (286)
187 2mad_H Methylamine dehydrogena 99.5 3.1E-10 1.1E-14 109.5 34.7 277 6-321 27-356 (373)
188 3c75_H MADH, methylamine dehyd 99.4 1.4E-10 4.7E-15 113.2 27.9 288 8-334 81-422 (426)
189 2dg1_A DRP35, lactonase; beta 99.4 6.9E-10 2.4E-14 104.8 30.7 243 2-269 47-315 (333)
190 3sjl_D Methylamine dehydrogena 99.4 8.2E-10 2.8E-14 105.9 29.6 293 4-335 37-384 (386)
191 3iuj_A Prolyl endopeptidase; h 99.3 2.2E-10 7.6E-15 119.8 25.5 248 51-317 130-406 (693)
192 2mad_H Methylamine dehydrogena 99.3 4.9E-09 1.7E-13 101.1 32.1 245 4-277 70-357 (373)
193 3sjl_D Methylamine dehydrogena 99.3 4.9E-10 1.7E-14 107.5 24.3 259 5-290 83-384 (386)
194 3no2_A Uncharacterized protein 99.3 4.7E-09 1.6E-13 96.9 30.0 216 10-298 4-231 (276)
195 3e5z_A Putative gluconolactona 99.3 2.1E-09 7.1E-14 99.9 27.8 224 54-299 32-276 (296)
196 3dsm_A Uncharacterized protein 99.3 1.7E-09 5.7E-14 102.4 26.7 269 22-325 13-311 (328)
197 3e5z_A Putative gluconolactona 99.3 2.9E-09 9.8E-14 98.9 27.3 235 2-273 30-289 (296)
198 1rwi_B Serine/threonine-protei 99.3 2.4E-09 8.3E-14 97.6 26.0 235 3-271 27-265 (270)
199 2ece_A 462AA long hypothetical 99.3 8.2E-08 2.8E-12 92.9 36.7 280 8-298 22-399 (462)
200 1rwi_B Serine/threonine-protei 99.3 2.9E-09 9.8E-14 97.2 25.0 232 54-319 28-267 (270)
201 2z2n_A Virginiamycin B lyase; 99.3 6.5E-08 2.2E-12 89.2 34.5 267 2-316 17-295 (299)
202 3c75_H MADH, methylamine dehyd 99.2 2.9E-09 1E-13 103.8 26.0 261 4-290 122-423 (426)
203 3dsm_A Uncharacterized protein 99.2 2.3E-09 7.8E-14 101.5 24.2 232 24-279 62-310 (328)
204 3g4e_A Regucalcin; six bladed 99.2 6.2E-08 2.1E-12 90.1 29.8 225 54-299 17-261 (297)
205 1pjx_A Dfpase, DIISOPROPYLFLUO 99.1 3.9E-08 1.3E-12 91.6 27.5 244 2-270 20-299 (314)
206 1q7f_A NHL, brain tumor CG1071 99.1 4.6E-08 1.6E-12 90.0 27.5 219 90-341 29-267 (286)
207 3hrp_A Uncharacterized protein 99.1 8.7E-08 3E-12 93.5 30.1 228 2-314 133-408 (409)
208 2qc5_A Streptogramin B lactona 99.1 9E-07 3.1E-11 81.4 34.3 254 2-295 22-287 (300)
209 1mda_H Methylamine dehydrogena 99.1 1.1E-08 3.8E-13 98.0 20.6 255 27-323 47-354 (368)
210 1pjx_A Dfpase, DIISOPROPYLFLUO 99.1 1.7E-07 5.7E-12 87.3 28.2 241 53-315 21-298 (314)
211 1mda_H Methylamine dehydrogena 99.1 1.1E-08 3.9E-13 97.9 20.2 255 4-288 69-365 (368)
212 3g4e_A Regucalcin; six bladed 99.0 2.7E-07 9.3E-12 85.7 28.2 227 4-256 17-261 (297)
213 2z2n_A Virginiamycin B lyase; 99.0 2.7E-06 9.2E-11 78.1 33.0 248 51-337 16-278 (299)
214 3fvz_A Peptidyl-glycine alpha- 99.0 1.1E-07 3.9E-12 89.7 24.1 203 118-341 69-307 (329)
215 1fwx_A Nitrous oxide reductase 99.0 6E-08 2E-12 97.1 22.6 262 9-319 99-434 (595)
216 2ghs_A AGR_C_1268P; regucalcin 98.9 2.4E-06 8.4E-11 80.4 30.1 218 54-299 53-291 (326)
217 2ghs_A AGR_C_1268P; regucalcin 98.9 1.9E-06 6.4E-11 81.2 29.0 225 3-256 52-291 (326)
218 3dr2_A Exported gluconolactona 98.9 8E-07 2.7E-11 82.8 25.9 225 54-299 49-296 (305)
219 2qe8_A Uncharacterized protein 98.9 3.8E-07 1.3E-11 86.7 23.3 259 2-299 19-310 (343)
220 3no2_A Uncharacterized protein 98.9 4E-07 1.4E-11 83.8 22.2 181 115-323 12-203 (276)
221 1npe_A Nidogen, entactin; glyc 98.9 6.9E-06 2.4E-10 74.7 29.9 249 11-292 1-263 (267)
222 2ece_A 462AA long hypothetical 98.8 3.9E-06 1.3E-10 81.3 26.5 242 5-255 87-399 (462)
223 2qc5_A Streptogramin B lactona 98.8 2.7E-05 9.1E-10 71.4 31.4 231 53-319 23-263 (300)
224 2xe4_A Oligopeptidase B; hydro 98.8 7.5E-06 2.6E-10 86.2 30.2 200 53-268 177-398 (751)
225 1npe_A Nidogen, entactin; glyc 98.8 2.8E-05 9.7E-10 70.6 30.3 248 61-336 1-262 (267)
226 2xe4_A Oligopeptidase B; hydro 98.7 3.7E-06 1.3E-10 88.6 27.3 249 3-272 177-460 (751)
227 3dr2_A Exported gluconolactona 98.7 1.6E-05 5.5E-10 73.8 28.8 226 3-256 48-296 (305)
228 1xip_A Nucleoporin NUP159; bet 98.7 3.2E-07 1.1E-11 88.2 16.4 126 195-341 88-230 (388)
229 1xip_A Nucleoporin NUP159; bet 98.7 1E-06 3.5E-11 84.7 18.5 215 51-299 39-299 (388)
230 3hrp_A Uncharacterized protein 98.7 8.3E-06 2.8E-10 79.4 25.3 197 90-318 130-357 (409)
231 1fwx_A Nitrous oxide reductase 98.6 3.1E-06 1E-10 84.8 18.5 268 11-316 13-361 (595)
232 1kb0_A Quinohemoprotein alcoho 98.2 0.00083 2.8E-08 69.7 27.0 58 261-324 457-516 (677)
233 2qe8_A Uncharacterized protein 98.1 0.00093 3.2E-08 63.0 24.2 180 142-337 67-303 (343)
234 2iwa_A Glutamine cyclotransfer 98.1 0.00096 3.3E-08 60.4 22.6 194 3-228 24-237 (266)
235 3v65_B Low-density lipoprotein 98.0 0.0039 1.3E-07 59.9 27.1 223 25-274 95-322 (386)
236 1kb0_A Quinohemoprotein alcoho 98.0 0.0035 1.2E-07 65.0 28.4 76 219-297 457-537 (677)
237 3v64_C Agrin; beta propeller, 98.0 0.0095 3.2E-07 56.3 29.7 221 25-272 52-277 (349)
238 3v65_B Low-density lipoprotein 98.0 0.012 4E-07 56.5 29.8 232 61-322 87-325 (386)
239 3hxj_A Pyrrolo-quinoline quino 97.9 0.00093 3.2E-08 62.0 19.7 105 196-315 215-323 (330)
240 2iwa_A Glutamine cyclotransfer 97.9 0.00064 2.2E-08 61.5 17.7 175 145-343 24-224 (266)
241 1ijq_A LDL receptor, low-densi 97.9 0.016 5.4E-07 53.8 28.7 223 25-274 9-242 (316)
242 1yiq_A Quinohemoprotein alcoho 97.9 0.01 3.4E-07 61.6 28.4 58 261-324 455-514 (689)
243 2fp8_A Strictosidine synthase; 97.8 0.018 6.3E-07 53.3 28.3 238 3-270 22-313 (322)
244 1yiq_A Quinohemoprotein alcoho 97.8 0.023 7.8E-07 58.9 29.0 77 219-298 455-536 (689)
245 3qqz_A Putative uncharacterize 97.7 0.023 7.9E-07 50.9 24.8 198 2-226 29-251 (255)
246 3hxj_A Pyrrolo-quinoline quino 97.7 0.01 3.5E-07 54.8 23.4 208 24-270 115-324 (330)
247 3nol_A Glutamine cyclotransfer 97.7 0.0019 6.7E-08 57.9 17.0 157 173-343 63-243 (262)
248 3v64_C Agrin; beta propeller, 97.7 0.035 1.2E-06 52.3 32.5 237 54-321 38-281 (349)
249 3q7m_A Lipoprotein YFGL, BAMB; 97.7 0.022 7.5E-07 53.9 25.2 95 215-322 245-344 (376)
250 2fp8_A Strictosidine synthase; 97.6 0.014 4.9E-07 54.0 23.0 241 54-316 23-313 (322)
251 3nol_A Glutamine cyclotransfer 97.6 0.018 6E-07 51.6 22.1 183 3-218 46-247 (262)
252 2hz6_A Endoplasmic reticulum t 97.6 9.4E-05 3.2E-09 70.8 7.7 62 10-81 8-70 (369)
253 1n7d_A LDL receptor, low-densi 97.6 0.00084 2.9E-08 69.8 15.3 227 25-278 385-622 (699)
254 3s25_A Hypothetical 7-bladed b 97.6 0.044 1.5E-06 50.5 29.2 259 7-317 21-294 (302)
255 4hw6_A Hypothetical protein, I 97.6 0.062 2.1E-06 52.3 27.5 139 3-159 142-290 (433)
256 4a2l_A BT_4663, two-component 97.6 0.087 3E-06 55.4 30.2 269 2-317 133-437 (795)
257 3tc9_A Hypothetical hydrolase; 97.6 0.0066 2.2E-07 59.2 20.0 152 145-317 140-302 (430)
258 2p4o_A Hypothetical protein; p 97.6 0.049 1.7E-06 50.0 28.7 233 34-299 20-277 (306)
259 3sov_A LRP-6, low-density lipo 97.5 0.048 1.6E-06 50.7 24.8 223 25-274 12-242 (318)
260 3s25_A Hypothetical 7-bladed b 97.5 0.0049 1.7E-07 57.0 17.6 176 147-341 58-239 (302)
261 3p5b_L Low density lipoprotein 97.5 0.079 2.7E-06 50.9 29.0 226 25-277 91-327 (400)
262 3q7m_A Lipoprotein YFGL, BAMB; 97.5 0.054 1.8E-06 51.1 24.7 242 24-313 111-375 (376)
263 3mbr_X Glutamine cyclotransfer 97.4 0.0055 1.9E-07 54.4 15.5 157 173-343 41-222 (243)
264 3p5b_L Low density lipoprotein 97.4 0.1 3.6E-06 50.0 30.6 235 62-322 84-327 (400)
265 3tc9_A Hypothetical hydrolase; 97.4 0.049 1.7E-06 52.9 23.7 158 92-269 138-300 (430)
266 3m0c_C LDL receptor, low-densi 97.4 0.19 6.5E-06 52.7 30.4 230 63-318 397-635 (791)
267 2ad6_A Methanol dehydrogenase 97.4 0.15 5.2E-06 51.4 28.2 79 218-299 443-526 (571)
268 1k3i_A Galactose oxidase precu 97.4 0.035 1.2E-06 57.1 23.5 283 4-299 190-530 (656)
269 1kv9_A Type II quinohemoprotei 97.3 0.13 4.5E-06 53.0 27.4 57 261-323 438-496 (668)
270 3sov_A LRP-6, low-density lipo 97.3 0.1 3.5E-06 48.4 29.2 231 63-320 6-243 (318)
271 1ijq_A LDL receptor, low-densi 97.3 0.1 3.5E-06 48.2 30.6 232 63-320 3-243 (316)
272 3m0c_C LDL receptor, low-densi 97.3 0.19 6.5E-06 52.7 27.8 221 26-274 404-636 (791)
273 4hw6_A Hypothetical protein, I 97.3 0.099 3.4E-06 50.8 24.2 201 92-319 140-377 (433)
274 3mbr_X Glutamine cyclotransfer 97.2 0.093 3.2E-06 46.4 21.5 117 2-138 23-141 (243)
275 2xzh_A Clathrin heavy chain 1; 97.2 0.13 4.3E-06 47.5 30.9 267 11-321 36-328 (365)
276 3qqz_A Putative uncharacterize 97.2 0.075 2.6E-06 47.5 20.8 176 143-337 28-236 (255)
277 2p4o_A Hypothetical protein; p 97.2 0.14 4.9E-06 46.8 25.8 215 92-341 33-274 (306)
278 3nok_A Glutaminyl cyclase; bet 97.0 0.034 1.2E-06 49.8 16.5 159 115-299 72-254 (268)
279 3kya_A Putative phosphatase; s 97.0 0.039 1.3E-06 54.4 18.1 155 144-317 141-342 (496)
280 2ism_A Putative oxidoreductase 96.9 0.28 9.6E-06 46.1 24.8 240 50-299 32-334 (352)
281 4a2l_A BT_4663, two-component 96.9 0.58 2E-05 49.1 33.9 265 2-316 175-480 (795)
282 3nok_A Glutaminyl cyclase; bet 96.9 0.04 1.4E-06 49.4 15.5 133 5-159 101-252 (268)
283 1bpo_A Protein (clathrin); cla 96.8 0.36 1.2E-05 46.3 31.8 267 11-321 35-327 (494)
284 2xzh_A Clathrin heavy chain 1; 96.7 0.36 1.2E-05 44.5 28.9 247 54-334 30-311 (365)
285 1n7d_A LDL receptor, low-densi 96.7 0.0085 2.9E-07 62.3 11.6 113 198-317 455-572 (699)
286 2ad6_A Methanol dehydrogenase 96.6 0.68 2.3E-05 46.6 28.2 59 260-324 443-503 (571)
287 3v9f_A Two-component system se 96.6 0.85 2.9E-05 47.7 29.9 108 195-317 406-525 (781)
288 3sre_A PON1, serum paraoxonase 96.5 0.53 1.8E-05 44.2 25.2 97 196-298 165-285 (355)
289 2hz6_A Endoplasmic reticulum t 96.5 0.00072 2.5E-08 64.6 2.0 109 198-320 40-154 (369)
290 1k3i_A Galactose oxidase precu 96.5 0.26 8.9E-06 50.6 21.1 70 4-79 247-323 (656)
291 1w6s_A Methanol dehydrogenase 96.5 0.91 3.1E-05 45.9 28.6 76 219-297 453-533 (599)
292 4a0p_A LRP6, LRP-6, low-densit 96.4 0.97 3.3E-05 46.1 26.8 221 25-271 14-238 (628)
293 2p9w_A MAL S 1 allergenic prot 96.4 0.38 1.3E-05 44.5 19.3 121 145-271 66-216 (334)
294 1bpo_A Protein (clathrin); cla 96.4 0.75 2.6E-05 44.2 31.1 247 54-334 29-310 (494)
295 3kya_A Putative phosphatase; s 96.3 0.89 3.1E-05 44.7 27.5 146 3-158 142-326 (496)
296 3sre_A PON1, serum paraoxonase 96.3 0.53 1.8E-05 44.2 20.0 114 196-315 112-251 (355)
297 4a0p_A LRP6, LRP-6, low-densit 96.3 1.2 4.1E-05 45.3 30.6 228 61-317 6-239 (628)
298 3a9g_A Putative uncharacterize 96.2 0.081 2.8E-06 49.9 14.2 142 197-341 30-213 (354)
299 3s94_A LRP-6, low-density lipo 96.2 0.71 2.4E-05 47.0 22.1 157 144-318 42-204 (619)
300 3a9g_A Putative uncharacterize 96.2 0.18 6.3E-06 47.4 16.6 139 144-296 31-214 (354)
301 1kv9_A Type II quinohemoprotei 96.0 1.7 5.8E-05 44.6 28.0 77 219-298 438-520 (668)
302 2ism_A Putative oxidoreductase 95.8 0.19 6.5E-06 47.3 14.7 98 197-298 32-153 (352)
303 2g8s_A Glucose/sorbosone dehyd 95.7 0.2 6.7E-06 47.2 14.4 141 144-296 20-214 (353)
304 3v9f_A Two-component system se 95.7 2.5 8.4E-05 44.1 30.5 109 195-318 494-613 (781)
305 2p9w_A MAL S 1 allergenic prot 95.6 0.76 2.6E-05 42.5 17.2 110 198-315 65-214 (334)
306 3das_A Putative oxidoreductase 95.4 0.94 3.2E-05 42.3 17.4 142 144-297 34-219 (347)
307 1xi4_A Clathrin heavy chain; a 95.4 2.2 7.5E-05 47.2 22.1 235 11-276 35-295 (1630)
308 3amr_A 3-phytase; beta-propell 95.4 1.8 6.2E-05 40.4 24.2 113 196-317 128-264 (355)
309 1cru_A Protein (soluble quinop 95.3 1 3.6E-05 43.8 18.1 143 144-298 29-246 (454)
310 3s94_A LRP-6, low-density lipo 95.2 3.1 0.00011 42.2 33.3 136 176-318 372-512 (619)
311 3das_A Putative oxidoreductase 94.7 1.5 5E-05 41.0 16.6 137 197-336 33-213 (347)
312 1xi4_A Clathrin heavy chain; a 94.7 2.6 8.8E-05 46.7 20.2 235 54-323 29-297 (1630)
313 2g8s_A Glucose/sorbosone dehyd 94.1 3.7 0.00013 38.3 30.0 51 50-101 19-76 (353)
314 3pbp_A Nucleoporin NUP82; beta 93.6 5.3 0.00018 38.2 19.6 129 25-159 40-197 (452)
315 2xbg_A YCF48-like protein; pho 93.6 4.3 0.00015 37.2 28.8 96 195-299 204-311 (327)
316 1cru_A Protein (soluble quinop 93.4 2.7 9.2E-05 40.8 16.4 100 197-299 28-163 (454)
317 1flg_A Protein (quinoprotein e 93.3 7.5 0.00026 39.0 27.1 78 218-298 465-547 (582)
318 3amr_A 3-phytase; beta-propell 93.2 5.4 0.00019 37.1 25.8 197 62-278 42-272 (355)
319 1w6s_A Methanol dehydrogenase 93.1 8.1 0.00028 38.9 28.8 59 260-324 452-512 (599)
320 3pbp_A Nucleoporin NUP82; beta 93.0 6.6 0.00023 37.6 19.1 146 58-222 29-206 (452)
321 1flg_A Protein (quinoprotein e 92.9 8.6 0.00029 38.6 29.4 59 260-324 465-525 (582)
322 4hvt_A Ritya.17583.B, post-pro 92.6 11 0.00036 38.9 25.5 254 4-269 133-429 (711)
323 3sbq_A Nitrous-oxide reductase 92.5 2.1 7E-05 42.5 13.6 118 197-319 324-481 (638)
324 2wg3_C Hedgehog-interacting pr 91.9 9.5 0.00032 37.0 17.9 96 195-290 68-227 (463)
325 4hvt_A Ritya.17583.B, post-pro 90.0 19 0.00065 37.0 23.9 239 57-315 137-429 (711)
326 1tl2_A L10, protein (tachylect 88.5 3.6 0.00012 35.6 10.2 92 197-297 42-152 (236)
327 2wg3_C Hedgehog-interacting pr 86.1 26 0.00087 34.0 16.5 100 198-299 16-158 (463)
328 2xbg_A YCF48-like protein; pho 84.5 23 0.0008 32.1 30.8 128 194-335 161-303 (327)
329 2vpj_A Kelch-like protein 12; 80.6 30 0.001 30.6 21.0 79 219-299 175-262 (301)
330 4gq2_M Nucleoporin NUP120; bet 80.2 5.9 0.0002 42.4 9.6 38 2-44 238-275 (950)
331 3sbq_A Nitrous-oxide reductase 78.6 3.3 0.00011 41.1 6.3 69 240-316 326-408 (638)
332 2vpj_A Kelch-like protein 12; 75.4 43 0.0015 29.6 22.1 54 219-272 222-280 (301)
333 4a9v_A PHOX; hydrolase, beta-p 74.8 16 0.00056 36.3 10.1 63 240-302 479-553 (592)
334 3f7f_A Nucleoporin NUP120; nuc 73.4 50 0.0017 33.8 13.5 36 2-44 224-259 (729)
335 4fhn_B Nucleoporin NUP120; pro 68.3 4.8 0.00016 44.1 5.2 39 2-45 240-278 (1139)
336 3zwu_A Alkaline phosphatase PH 67.6 19 0.00067 36.0 9.0 61 241-301 480-552 (592)
337 1tl2_A L10, protein (tachylect 66.5 25 0.00086 30.4 8.3 86 238-336 42-146 (236)
338 3zwu_A Alkaline phosphatase PH 63.1 12 0.00041 37.5 6.5 61 4-67 480-548 (592)
339 3mez_B Mannose-specific lectin 61.4 43 0.0015 25.1 8.1 61 11-79 24-84 (113)
340 3ei3_A DNA damage-binding prot 60.3 2E+02 0.0067 31.4 30.5 71 2-78 556-635 (1158)
341 3ii7_A Kelch-like protein 7; p 58.9 94 0.0032 27.3 12.0 110 208-317 12-128 (306)
342 4gq2_M Nucleoporin NUP120; bet 56.2 51 0.0017 35.2 10.3 38 238-278 237-274 (950)
343 1b2p_A Protein (lectin); manno 52.1 74 0.0025 24.0 9.0 61 8-78 27-87 (119)
344 1zgk_A Kelch-like ECH-associat 51.8 1.3E+02 0.0043 26.6 20.1 52 219-272 231-289 (308)
345 2uvk_A YJHT; unknown function, 48.6 76 0.0026 28.7 9.2 59 262-320 286-346 (357)
346 4a9v_A PHOX; hydrolase, beta-p 48.4 31 0.0011 34.3 6.5 62 4-67 480-548 (592)
347 2uvk_A YJHT; unknown function, 41.1 81 0.0028 28.5 8.1 93 207-299 19-127 (357)
348 2woz_A Kelch repeat and BTB do 40.9 1.2E+02 0.0042 26.8 9.2 110 207-322 158-293 (318)
349 3kxs_F Capsid protein; core pr 39.0 10 0.00035 28.6 1.1 10 379-388 128-137 (143)
350 2xn4_A Kelch-like protein 2; s 37.3 2.1E+02 0.0071 24.9 20.3 79 219-299 173-260 (302)
351 4h3o_A Lectin; cadmium, plant 35.8 1.3E+02 0.0044 22.0 9.9 60 11-79 19-78 (105)
352 4asc_A Kelch repeat and BTB do 35.0 2.3E+02 0.0079 24.8 12.6 95 221-317 69-175 (315)
353 3ei3_A DNA damage-binding prot 33.5 5E+02 0.017 28.2 33.1 234 63-316 708-999 (1158)
354 1zgk_A Kelch-like ECH-associat 33.2 2.5E+02 0.0084 24.6 19.5 79 219-299 184-271 (308)
355 3a0c_A Mannose/sialic acid-bin 32.8 1.5E+02 0.005 21.8 9.4 60 9-78 18-77 (110)
356 2zwa_A Leucine carboxyl methyl 31.4 4.2E+02 0.014 26.7 15.9 98 220-318 469-579 (695)
357 2fr2_A Hypothetical protein RV 30.4 2.2E+02 0.0075 23.1 8.6 56 4-77 38-95 (172)
358 2zwa_A Leucine carboxyl methyl 30.0 2.4E+02 0.008 28.6 10.1 95 219-317 412-523 (695)
359 2a13_A AT1G79260; structural g 28.0 2.2E+02 0.0075 23.0 7.6 56 4-77 49-106 (166)
360 2xn4_A Kelch-like protein 2; s 22.2 3.8E+02 0.013 23.1 22.3 54 219-272 220-278 (302)
361 2be1_A Serine/threonine-protei 21.0 4.7E+02 0.016 23.7 9.3 107 211-325 12-140 (339)
362 3dzw_A Agglutinin; lectin, man 20.8 2.5E+02 0.0085 20.4 9.2 60 10-79 18-77 (109)
363 4fhn_B Nucleoporin NUP120; pro 20.3 98 0.0033 33.7 5.2 38 238-278 239-276 (1139)
No 1
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1e-32 Score=262.72 Aligned_cols=274 Identities=12% Similarity=0.071 Sum_probs=211.6
Q ss_pred cceEEecCC----CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEe
Q 013884 2 LLLLTCLRV----GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFD 76 (434)
Q Consensus 2 V~~l~fSP~----g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~ 76 (434)
|++|+|+|+ +.+|+|++ .|+.|+|||+.+++....+.... |...+.++.|++++.++++++ |++|++||
T Consensus 35 V~~v~~~~~~~~~~~~l~tgs-----~D~~v~vW~~~~~~~~~~~~l~g-h~~~v~~~~~~~~~~~l~s~s~D~~i~lWd 108 (321)
T 3ow8_A 35 IWSVAWGTNKKENSETVVTGS-----LDDLVKVWKWRDERLDLQWSLEG-HQLGVVSVDISHTLPIAASSSLDAHIRLWD 108 (321)
T ss_dssp EEEEEEC-------CEEEEEE-----TTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred EEEEEEecCCCCCCCEEEEEc-----CCCCEEEEECCCCCeeeeeeecc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 789999985 67999999 89999999998776533322221 446777999999999999885 68999999
Q ss_pred CCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013884 77 TTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL 156 (434)
Q Consensus 77 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l 156 (434)
+.+.........+...+..++|+|+ +..+++ ++.++.|++|++.. .........+...+..+.|+|+|++|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~~-----g~~dg~v~i~~~~~---~~~~~~~~~~~~~v~~~~~spdg~~l 179 (321)
T 3ow8_A 109 LENGKQIKSIDAGPVDAWTLAFSPD-SQYLAT-----GTHVGKVNIFGVES---GKKEYSLDTRGKFILSIAYSPDGKYL 179 (321)
T ss_dssp TTTTEEEEEEECCTTCCCCEEECTT-SSEEEE-----ECTTSEEEEEETTT---CSEEEEEECSSSCEEEEEECTTSSEE
T ss_pred CCCCCEEEEEeCCCccEEEEEECCC-CCEEEE-----EcCCCcEEEEEcCC---CceeEEecCCCceEEEEEECCCCCEE
Confidence 9875433333344456888999998 455553 35568999999987 66777777777788999999999987
Q ss_pred EEEEEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEEEc
Q 013884 157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL 234 (434)
Q Consensus 157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~~ 234 (434)
+... .|...+ ++++... .....+ .+..+|.+++|+|+++.|+ ++..|+.|++||++. ..+..+
T Consensus 180 asg~---~dg~i~---------iwd~~~~-~~~~~~~~h~~~v~~l~~spd~~~l~--s~s~dg~i~iwd~~~~~~~~~~ 244 (321)
T 3ow8_A 180 ASGA---IDGIIN---------IFDIATG-KLLHTLEGHAMPIRSLTFSPDSQLLV--TASDDGYIKIYDVQHANLAGTL 244 (321)
T ss_dssp EEEE---TTSCEE---------EEETTTT-EEEEEECCCSSCCCEEEECTTSCEEE--EECTTSCEEEEETTTCCEEEEE
T ss_pred EEEc---CCCeEE---------EEECCCC-cEEEEEcccCCceeEEEEcCCCCEEE--EEcCCCeEEEEECCCcceeEEE
Confidence 6532 344333 3333332 222222 3578999999999999888 688899999999964 334444
Q ss_pred --CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEE
Q 013884 235 --GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIK 310 (434)
Q Consensus 235 --~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~ 310 (434)
|...+.+++|+|+|++|++++ .+|.|+|||+.+++++..+.+| .+..++|+|||++|++++. |+.|+
T Consensus 245 ~~h~~~v~~~~~sp~~~~l~s~s---~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~------d~~i~ 315 (321)
T 3ow8_A 245 SGHASWVLNVAFCPDDTHFVSSS---SDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGD------DQEIH 315 (321)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET------TCCEE
T ss_pred cCCCCceEEEEECCCCCEEEEEe---CCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeC------CCeEE
Confidence 778899999999999999999 5679999999999999988776 5667999999999999999 99999
Q ss_pred EEee
Q 013884 311 IFHH 314 (434)
Q Consensus 311 iw~~ 314 (434)
|||+
T Consensus 316 vwd~ 319 (321)
T 3ow8_A 316 IYDC 319 (321)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9996
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.8e-33 Score=274.86 Aligned_cols=272 Identities=14% Similarity=0.197 Sum_probs=218.7
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|++++|||+|++|++++ .|+.|+|||+.+++.+..+..+. ..+.++.|+|++++|++++ |++|++||+...
T Consensus 111 V~~~~~~p~~~~l~s~s-----~Dg~i~vwd~~~~~~~~~l~~h~---~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~ 182 (410)
T 1vyh_C 111 VTRVIFHPVFSVMVSAS-----EDATIKVWDYETGDFERTLKGHT---DSVQDISFDHSGKLLASCSADMTIKLWDFQGF 182 (410)
T ss_dssp EEEEEECSSSSEEEEEE-----SSSCEEEEETTTCCCCEEECCCS---SCEEEEEECTTSSEEEEEETTSCCCEEETTSS
T ss_pred EEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCcEEEEEeccC---CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Confidence 78999999999999999 89999999999999888887653 6777999999999999985 679999999876
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
........|...|.++.|+|++ ..++. ++.++.|++|++.+ +..+.....|...+..+.|+++|..++..
T Consensus 183 ~~~~~~~~h~~~V~~v~~~p~~-~~l~s-----~s~D~~i~~wd~~~---~~~~~~~~~h~~~v~~~~~~~~g~~l~s~- 252 (410)
T 1vyh_C 183 ECIRTMHGHDHNVSSVSIMPNG-DHIVS-----ASRDKTIKMWEVQT---GYCVKTFTGHREWVRMVRPNQDGTLIASC- 252 (410)
T ss_dssp CEEECCCCCSSCEEEEEECSSS-SEEEE-----EETTSEEEEEETTT---CCEEEEEECCSSCEEEEEECTTSSEEEEE-
T ss_pred ceeEEEcCCCCCEEEEEEeCCC-CEEEE-----EeCCCeEEEEECCC---CcEEEEEeCCCccEEEEEECCCCCEEEEE-
Confidence 5444445566789999999984 44442 35678999999988 77788888888889999999999976543
Q ss_pred EecccccCceeecceeEEEEeeCCCceeeee-cCCCCCeEEEEECcC--------------------CCEEEEEEccCCC
Q 013884 161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVP-LRKEGPVHDVQWSYS--------------------GSEFAVVYGFMPA 219 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~-l~~~~~i~~~~wspd--------------------g~~~av~~g~~~~ 219 (434)
..|.+.+.| ++... ..... ..+...|.+++|+|+ |..|+ +|+.|+
T Consensus 253 --s~D~~v~vw---------d~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~--sgs~D~ 318 (410)
T 1vyh_C 253 --SNDQTVRVW---------VVATK-ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL--SGSRDK 318 (410)
T ss_dssp --ETTSCEEEE---------ETTTC-CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEE--EEETTS
T ss_pred --cCCCeEEEE---------ECCCC-ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEE--EEeCCC
Confidence 245554433 22222 22222 235789999999997 44555 688899
Q ss_pred eEEEEecc-ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEE
Q 013884 220 SATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYF 294 (434)
Q Consensus 220 ~i~l~d~~-~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l 294 (434)
.|++||++ +..+..+ |...+++++|+|+|++|++++ .+|.|++||+.+++++..+.+| .++.++|+|++.+|
T Consensus 319 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s---~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 395 (410)
T 1vyh_C 319 TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA---DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYV 395 (410)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE---TTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCE
T ss_pred eEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEe---CCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEE
Confidence 99999986 4445554 788899999999999999999 5679999999999888888776 56779999999999
Q ss_pred EEEEcCCceeeCCcEEEEee
Q 013884 295 MTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 295 ~tas~~~rl~~D~~i~iw~~ 314 (434)
++++. |+.|+||++
T Consensus 396 ~sgs~------D~~i~vW~~ 409 (410)
T 1vyh_C 396 VTGSV------DQTVKVWEC 409 (410)
T ss_dssp EEEET------TSEEEEEC-
T ss_pred EEEeC------CCcEEEEeC
Confidence 99999 999999986
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.9e-32 Score=262.82 Aligned_cols=271 Identities=10% Similarity=0.124 Sum_probs=213.0
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|++++|||||++|+|++ .|+.|+|||+.+++.+..+..+. ..+.+++|+||+++|++++ ++.|++|++...
T Consensus 58 v~~~~~s~d~~~l~s~s-----~Dg~v~iWd~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~ 129 (340)
T 1got_B 58 IYAMHWGTDSRLLLSAS-----QDGKLIIWDSYTTNKVHAIPLRS---SWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129 (340)
T ss_dssp EEEEEECTTSSEEEEEE-----TTTEEEEEETTTCCEEEEEECSS---SCEEEEEECTTSSEEEEEETTCEEEEEETTTC
T ss_pred eEEEEECCCCCEEEEEe-----CCCcEEEEECCCCCcceEeecCC---ccEEEEEECCCCCEEEEEeCCCeEEEEECccC
Confidence 78999999999999999 89999999999999988887654 5667899999999999884 679999998764
Q ss_pred CCc----eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013884 81 PKG----ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL 156 (434)
Q Consensus 81 ~~~----~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l 156 (434)
... .....|...|..+.|+|++ . ++. .+.++.|++|++.+ +..+.....|...+..+.|+|+|..+
T Consensus 130 ~~~~~~~~~~~~h~~~v~~~~~~~~~-~-l~s-----~s~d~~i~~wd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l 199 (340)
T 1got_B 130 EGNVRVSRELAGHTGYLSCCRFLDDN-Q-IVT-----SSGDTTCALWDIET---GQQTTTFTGHTGDVMSLSLAPDTRLF 199 (340)
T ss_dssp SBSCEEEEEEECCSSCEEEEEEEETT-E-EEE-----EETTSCEEEEETTT---TEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred CCcceeEEEecCCCccEEEEEECCCC-c-EEE-----EECCCcEEEEECCC---CcEEEEEcCCCCceEEEEECCCCCEE
Confidence 321 1123345578889999873 3 322 24567899999988 77788888888999999999999975
Q ss_pred EEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEEEcC
Q 013884 157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILELG 235 (434)
Q Consensus 157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~~~ 235 (434)
+.. ..|.+.+.| ++........-..+...|.+++|+|+++.|+ +|+.|+.|++||++. ..+..+.
T Consensus 200 ~sg---~~d~~v~~w---------d~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~--s~s~d~~v~iwd~~~~~~~~~~~ 265 (340)
T 1got_B 200 VSG---ACDASAKLW---------DVREGMCRQTFTGHESDINAICFFPNGNAFA--TGSDDATCRLFDLRADQELMTYS 265 (340)
T ss_dssp EEE---ETTSCEEEE---------ETTTCSEEEEECCCSSCEEEEEECTTSSEEE--EEETTSCEEEEETTTTEEEEEEC
T ss_pred EEE---eCCCcEEEE---------ECCCCeeEEEEcCCcCCEEEEEEcCCCCEEE--EEcCCCcEEEEECCCCcEEEEEc
Confidence 442 245444433 2222211111223578999999999999988 577899999999974 4444442
Q ss_pred ----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcE
Q 013884 236 ----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGI 309 (434)
Q Consensus 236 ----~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i 309 (434)
...+.+++|+|+|++|++++ .+|.|++||+.+++.+..+.+| .+..++|+|||++|++++. |+.|
T Consensus 266 ~~~~~~~v~~~~~s~~g~~l~~g~---~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~------D~~i 336 (340)
T 1got_B 266 HDNIICGITSVSFSKSGRLLLAGY---DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW------DSFL 336 (340)
T ss_dssp CTTCCSCEEEEEECTTSSEEEEEE---TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEET------TSCE
T ss_pred cCCcccceEEEEECCCCCEEEEEC---CCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcC------CccE
Confidence 24689999999999999998 5679999999999888888877 5667999999999999999 9999
Q ss_pred EEEe
Q 013884 310 KIFH 313 (434)
Q Consensus 310 ~iw~ 313 (434)
+|||
T Consensus 337 ~iWd 340 (340)
T 1got_B 337 KIWN 340 (340)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9996
No 4
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.1e-33 Score=270.41 Aligned_cols=285 Identities=13% Similarity=0.126 Sum_probs=202.7
Q ss_pred cceEEecCCCcEEEEEecCCC-CCCCcEEEEEcCCCcEEEEEee-cCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSST-PQEKNVILWKTETGEAVYQLFQ-KNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD 79 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~-~~d~~v~iWd~~~g~~~~~~~~-~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~ 79 (434)
|++|+|||||++|+|++.... -.|+.|++|+..++.....+.. ...+...+.+++|+||+++++.+.+++|+|||+..
T Consensus 45 V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~ 124 (357)
T 4g56_B 45 IGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILE 124 (357)
T ss_dssp EEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC----
T ss_pred EEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccc
Confidence 789999999999999984322 2378899999888764322110 01133667799999999999888899999999876
Q ss_pred CCCceeee----eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013884 80 FPKGILYR----LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG 155 (434)
Q Consensus 80 ~~~~~~~~----~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~ 155 (434)
........ .|...|.+++|+|+ +..++. .+.++.|++|++.+ ++.+.....|...+..+.|++++..
T Consensus 125 ~~~~~~~~~~~~~h~~~V~~v~~spd-g~~l~s-----gs~dg~v~iwd~~~---~~~~~~~~~h~~~v~~v~~s~~~~~ 195 (357)
T 4g56_B 125 KESLLVNKFAKYEHDDIVKTLSVFSD-GTQAVS-----GGKDFSVKVWDLSQ---KAVLKSYNAHSSEVNCVAACPGKDT 195 (357)
T ss_dssp ----CCCCEEECCCSSCEEEEEECSS-SSEEEE-----EETTSCEEEEETTT---TEEEEEECCCSSCEEEEEECTTCSS
T ss_pred cceeEEEeeccCCCCCCEEEEEECCC-CCEEEE-----EeCCCeEEEEECCC---CcEEEEEcCCCCCEEEEEEccCCCc
Confidence 54322222 34557999999998 455543 34567899999988 7788888888899999999999986
Q ss_pred EEEEEEecccccCceeecceeEEEEeeCCCc-eeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEE
Q 013884 156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPIL 232 (434)
Q Consensus 156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l-~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~ 232 (434)
+++.+. .|.+.+ ++++.... ...+.+ .+...+.+++|+|++..+++ +|..++.|++||++. ..+.
T Consensus 196 ~~~s~~--~dg~v~---------~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la-~g~~d~~i~~wd~~~~~~~~ 263 (357)
T 4g56_B 196 IFLSCG--EDGRIL---------LWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFA-CGDETGNVSLVNIKNPDSAQ 263 (357)
T ss_dssp CEEEEE--TTSCEE---------ECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEE-EEESSSCEEEEESSCGGGCE
T ss_pred eeeeec--cCCceE---------EEECCCCceeeeeeeccccccccchhhhhcccceEE-EeecccceeEEECCCCcEeE
Confidence 655433 333333 23322221 111121 24678999999998654443 577899999999863 3444
Q ss_pred Ec--CCcCeeEEEECCCC-CeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECC-CCCEEEEEEcCCceeeCC
Q 013884 233 EL--GSGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSP-DGRYFMTATTAPRLQIDN 307 (434)
Q Consensus 233 ~~--~~~~~~~i~~sP~g-~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wsp-dg~~l~tas~~~rl~~D~ 307 (434)
.+ +...+++++|+|+| ++|++++ .+|+|+|||+++++.+..+.+. .+..++||| |+.+|++++. |+
T Consensus 264 ~~~~~~~~v~~l~~sp~~~~~lasgs---~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~------Dg 334 (357)
T 4g56_B 264 TSAVHSQNITGLAYSYHSSPFLASIS---EDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGW------DH 334 (357)
T ss_dssp EECCCSSCEEEEEECSSSSCCEEEEE---TTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEET------TS
T ss_pred EEeccceeEEEEEEcCCCCCEEEEEe---CCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcC------CC
Confidence 44 78899999999998 5788888 5679999999999988777544 556699999 8999999999 99
Q ss_pred cEEEEeecC
Q 013884 308 GIKIFHHNG 316 (434)
Q Consensus 308 ~i~iw~~~g 316 (434)
.|+||++..
T Consensus 335 ~v~iW~~~~ 343 (357)
T 4g56_B 335 KVLHHHLPS 343 (357)
T ss_dssp CEEEEECC-
T ss_pred eEEEEECCC
Confidence 999999843
No 5
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.4e-32 Score=267.91 Aligned_cols=278 Identities=13% Similarity=0.148 Sum_probs=211.1
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|++++|||+|++|+|++ .|++|+|||+.+++.+..+..+. ..+.+++|+||+++|++++ |+.|++|++...
T Consensus 69 V~~~~~sp~~~~l~s~s-----~D~~v~iWd~~~~~~~~~~~~h~---~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~ 140 (380)
T 3iz6_a 69 VYSLDWTPEKNWIVSAS-----QDGRLIVWNALTSQKTHAIKLHC---PWVMECAFAPNGQSVACGGLDSACSIFNLSSQ 140 (380)
T ss_dssp EEEEEECTTSSCEEEEE-----TTSEEEEEETTTTEEEEEEECCC---TTCCCCEECTTSSEEEECCSSSCCEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCccceEEecCC---CCEEEEEECCCCCEEEEeeCCCcEEEEECCCC
Confidence 78999999999999999 89999999999999988887654 5677899999999999985 679999998642
Q ss_pred C-------CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-----eecccceeEEE
Q 013884 81 P-------KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-----SFFRCSTVQLN 148 (434)
Q Consensus 81 ~-------~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-----~~~~~~~~~~~ 148 (434)
. .......|...+..+.|+|+.+..++. ++.++.|++|++.+ ++.+... ..|...+..+.
T Consensus 141 ~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s-----~s~D~~i~~wd~~~---~~~~~~~~~~~~~~h~~~v~~~~ 212 (380)
T 3iz6_a 141 ADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLIT-----GSGDQTCVLWDVTT---GQRISIFGSEFPSGHTADVLSLS 212 (380)
T ss_dssp SSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEE-----ECTTSCEEEECTTT---CCEEEEECCCSSSSCCSCEEEEE
T ss_pred ccccCCccceeeccCCCcceEEEEEecCCCCEEEE-----ECCCCcEEEEEcCC---CcEEEEeecccCCCCccCeEEEE
Confidence 1 112233455568888999985555543 45678999999987 5655544 45677889999
Q ss_pred ECC-CCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc
Q 013884 149 WNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK 227 (434)
Q Consensus 149 ws~-~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~ 227 (434)
|++ ++..++. ...|.+.+. |.+...+. .......+.+.|.+++|+|+|+.|+ +++.|+.|++||++
T Consensus 213 ~~~~~~~~l~s---gs~D~~v~~-------wd~~~~~~-~~~~~~~h~~~v~~v~~~p~~~~l~--s~s~D~~i~lwd~~ 279 (380)
T 3iz6_a 213 INSLNANMFIS---GSCDTTVRL-------WDLRITSR-AVRTYHGHEGDINSVKFFPDGQRFG--TGSDDGTCRLFDMR 279 (380)
T ss_dssp ECSSSCCEEEE---EETTSCEEE-------EETTTTCC-CCEEECCCSSCCCEEEECTTSSEEE--EECSSSCEEEEETT
T ss_pred eecCCCCEEEE---EECCCeEEE-------EECCCCCc-ceEEECCcCCCeEEEEEecCCCeEE--EEcCCCeEEEEECC
Confidence 987 5665433 224555443 33221111 1122234678999999999999988 68889999999997
Q ss_pred c-eeEEEcC---------CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe----eCC--CceEEEECCCC
Q 013884 228 C-RPILELG---------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT----RAE--CSVTSEWSPDG 291 (434)
Q Consensus 228 ~-~~~~~~~---------~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~----~~~--~~~~~~wspdg 291 (434)
. ..+..+. ...+++++|+|+|++|++++ .+|.|++||+.+++.+..+ .+| .+.+++|+|||
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~---~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg 356 (380)
T 3iz6_a 280 TGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGY---SNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDG 356 (380)
T ss_dssp TTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEEC---TTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSS
T ss_pred CCcEEEEecccccccccccCceEEEEECCCCCEEEEEE---CCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCC
Confidence 4 4444331 12478999999999999988 5689999999988877666 334 56779999999
Q ss_pred CEEEEEEcCCceeeCCcEEEEeecCc
Q 013884 292 RYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 292 ~~l~tas~~~rl~~D~~i~iw~~~g~ 317 (434)
++|++++. |+.|+||++.+.
T Consensus 357 ~~l~sgs~------D~~i~iW~~~~~ 376 (380)
T 3iz6_a 357 SALCTGSW------DKNLKIWAFSGH 376 (380)
T ss_dssp SEEEEECT------TSCEEEEECCSS
T ss_pred CEEEEeeC------CCCEEEEecCCC
Confidence 99999999 999999999774
No 6
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2e-31 Score=257.41 Aligned_cols=272 Identities=14% Similarity=0.161 Sum_probs=211.5
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|++++|||+|++|+|++ .|+.|+|||+.+++....+..+. ..+.+++|+|||.++++++ ++.+++|++...
T Consensus 67 V~~~~~s~d~~~l~s~s-----~Dg~v~vWd~~~~~~~~~~~~~~---~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~ 138 (354)
T 2pbi_B 67 VLCMDWCKDKRRIVSSS-----QDGKVIVWDSFTTNKEHAVTMPC---TWVMACAYAPSGCAIACGGLDNKCSVYPLTFD 138 (354)
T ss_dssp EEEEEECTTSSEEEEEE-----TTSEEEEEETTTCCEEEEEECSS---SCCCEEEECTTSSEEEEESTTSEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEe-----CCCeEEEEECCCCCcceEEecCC---CCEEEEEECCCCCEEEEeeCCCCEEEEEEecc
Confidence 78999999999999999 89999999999999888876653 5667999999999999985 679999998542
Q ss_pred C------CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC--
Q 013884 81 P------KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG-- 152 (434)
Q Consensus 81 ~------~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~-- 152 (434)
. .......|...|..+.|+|++ ..++. .+.++.|++|++.+ ++.+.....|...+..+.|+|+
T Consensus 139 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t-----~s~D~~v~lwd~~~---~~~~~~~~~h~~~v~~~~~~~~~~ 209 (354)
T 2pbi_B 139 KNENMAAKKKSVAMHTNYLSACSFTNSD-MQILT-----ASGDGTCALWDVES---GQLLQSFHGHGADVLCLDLAPSET 209 (354)
T ss_dssp TTCCSGGGCEEEEECSSCEEEEEECSSS-SEEEE-----EETTSEEEEEETTT---CCEEEEEECCSSCEEEEEECCCSS
T ss_pred ccccccccceeeeccCCcEEEEEEeCCC-CEEEE-----EeCCCcEEEEeCCC---CeEEEEEcCCCCCeEEEEEEeCCC
Confidence 1 112334566779999999984 44443 34568999999988 7788888888888888998874
Q ss_pred CCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce-eE
Q 013884 153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PI 231 (434)
Q Consensus 153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~-~~ 231 (434)
|+.++.. ..|.+.+.| ++...........+...|.+++|+|+++.|+ +++.|+.+++||++.. .+
T Consensus 210 g~~l~sg---s~Dg~v~~w---------d~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~--s~s~D~~v~lwd~~~~~~~ 275 (354)
T 2pbi_B 210 GNTFVSG---GCDKKAMVW---------DMRSGQCVQAFETHESDVNSVRYYPSGDAFA--SGSDDATCRLYDLRADREV 275 (354)
T ss_dssp CCEEEEE---ETTSCEEEE---------ETTTCCEEEEECCCSSCEEEEEECTTSSEEE--EEETTSCEEEEETTTTEEE
T ss_pred CCEEEEE---eCCCeEEEE---------ECCCCcEEEEecCCCCCeEEEEEeCCCCEEE--EEeCCCeEEEEECCCCcEE
Confidence 5664432 244444433 3222211112223578999999999999888 5778999999999743 33
Q ss_pred EEcC----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceee
Q 013884 232 LELG----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQI 305 (434)
Q Consensus 232 ~~~~----~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~ 305 (434)
..+. ...++++.|+|+|++|++++ .+|.|++||+.+++.+..+.+| .+..++|+|||++|++++.
T Consensus 276 ~~~~~~~~~~~~~~~~~s~~g~~l~~g~---~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~------ 346 (354)
T 2pbi_B 276 AIYSKESIIFGASSVDFSLSGRLLFAGY---NDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSW------ 346 (354)
T ss_dssp EEECCTTCCSCEEEEEECTTSSEEEEEE---TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEET------
T ss_pred EEEcCCCcccceeEEEEeCCCCEEEEEE---CCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcC------
Confidence 3332 34678999999999999998 5579999999999888888776 5667999999999999999
Q ss_pred CCcEEEEe
Q 013884 306 DNGIKIFH 313 (434)
Q Consensus 306 D~~i~iw~ 313 (434)
|+.|+||+
T Consensus 347 D~~v~vW~ 354 (354)
T 2pbi_B 347 DHTLRVWA 354 (354)
T ss_dssp TSEEEEEC
T ss_pred CCCEEecC
Confidence 99999996
No 7
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-31 Score=258.21 Aligned_cols=284 Identities=12% Similarity=0.123 Sum_probs=205.4
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|++|+|||+|++|+|++ .|+.|+|||+.++..+........|...+.+++|+||+++|++++ |++|++|+....
T Consensus 19 v~~l~~sp~g~~las~~-----~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~ 93 (345)
T 3fm0_A 19 CWFLAWNPAGTLLASCG-----GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD 93 (345)
T ss_dssp EEEEEECTTSSCEEEEE-----TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC
T ss_pred EEEEEECCCCCEEEEEc-----CCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCC
Confidence 67899999999999999 899999999998865443332223557788999999999999985 679999998764
Q ss_pred CCc--eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013884 81 PKG--ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 81 ~~~--~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~ 158 (434)
... .....|...|.+++|+|+ +..++. .+.++.|++|++........+.....|...+..+.|+|+|..|+.
T Consensus 94 ~~~~~~~~~~h~~~v~~v~~sp~-~~~l~s-----~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s 167 (345)
T 3fm0_A 94 DFECVTTLEGHENEVKSVAWAPS-GNLLAT-----CSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLAS 167 (345)
T ss_dssp -EEEEEEECCCSSCEEEEEECTT-SSEEEE-----EETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEE
T ss_pred CeEEEEEccCCCCCceEEEEeCC-CCEEEE-----EECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEE
Confidence 321 223345667999999998 455553 345678999999763212334556667888999999999997654
Q ss_pred EEEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc---------
Q 013884 159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--------- 228 (434)
Q Consensus 159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~--------- 228 (434)
. ..|.+.+.| .+.. +...+...+ .+.+.|.+++|+|+|+.|+ +++.|+.|++||...
T Consensus 168 ~---s~d~~i~~w-------~~~~-~~~~~~~~~~~h~~~v~~l~~sp~g~~l~--s~s~D~~v~iW~~~~~~~~~~~~~ 234 (345)
T 3fm0_A 168 A---SYDDTVKLY-------REEE-DDWVCCATLEGHESTVWSLAFDPSGQRLA--SCSDDRTVRIWRQYLPGNEQGVAC 234 (345)
T ss_dssp E---ETTSCEEEE-------EEET-TEEEEEEEECCCSSCEEEEEECTTSSEEE--EEETTSCEEEEEEECTTCTTCCCC
T ss_pred E---eCCCcEEEE-------EecC-CCEEEEEEecCCCCceEEEEECCCCCEEE--EEeCCCeEEEeccccCCCCcccee
Confidence 3 245554433 2221 111111222 3578999999999999988 678899999998521
Q ss_pred -------eeEEE---cCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE--------EE-EEeeCC--CceEEEE
Q 013884 229 -------RPILE---LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK--------QL-GTTRAE--CSVTSEW 287 (434)
Q Consensus 229 -------~~~~~---~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~--------~i-~~~~~~--~~~~~~w 287 (434)
..+.. +|...+.+++|+|++.+|++++ .++.|++||..... .. ....+| .+..++|
T Consensus 235 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~---~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 311 (345)
T 3fm0_A 235 SGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATAC---GDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAW 311 (345)
T ss_dssp C---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEE---TTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEE
T ss_pred eccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEe---CCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEE
Confidence 11222 2677899999999999999998 55699999986531 11 222344 5677999
Q ss_pred CCCCC-EEEEEEcCCceeeCCcEEEEeecCce
Q 013884 288 SPDGR-YFMTATTAPRLQIDNGIKIFHHNGSL 318 (434)
Q Consensus 288 spdg~-~l~tas~~~rl~~D~~i~iw~~~g~~ 318 (434)
+|++. +|++++. |+.|+||++....
T Consensus 312 ~p~~~~~laS~s~------Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 312 NPKEPGLLASCSD------DGEVAFWKYQRPE 337 (345)
T ss_dssp CSSSTTEEEEEET------TSCEEEEEECC--
T ss_pred eCCCceEEEEcCC------CCcEEEEEecCCC
Confidence 99984 9999999 9999999996543
No 8
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.1e-31 Score=278.01 Aligned_cols=306 Identities=13% Similarity=0.117 Sum_probs=224.4
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcE--EEEEeecCcCCCCCCeeeecCCCcEEEEecC-----CeEEE
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEA--VYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-----NEIQF 74 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~--~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-----~~i~v 74 (434)
|++++|||||+||++++ .|++|+|||+.+++. ...+..+ ...+.+++|+||+++|+++++ +.|++
T Consensus 62 v~~~~~spdg~~lasg~-----~d~~v~lWd~~~~~~~~~~~~~~~---~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~ 133 (611)
T 1nr0_A 62 TTVAKTSPSGYYCASGD-----VHGNVRIWDTTQTTHILKTTIPVF---SGPVKDISWDSESKRIAAVGEGRERFGHVFL 133 (611)
T ss_dssp EEEEEECTTSSEEEEEE-----TTSEEEEEESSSTTCCEEEEEECS---SSCEEEEEECTTSCEEEEEECCSSCSEEEEE
T ss_pred eEEEEECCCCcEEEEEe-----CCCCEEEeECCCCcceeeEeeccc---CCceEEEEECCCCCEEEEEECCCCceeEEEE
Confidence 78999999999999999 899999999976543 4455443 366779999999999998754 26888
Q ss_pred EeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013884 75 FDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST 154 (434)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~ 154 (434)
||... .......|...|.+++|+|++...++. .+.++.|++|+... .+.+.....|...+.++.|+|+|+
T Consensus 134 wd~~~--~~~~l~gh~~~v~~v~f~p~~~~~l~s-----~s~D~~v~lwd~~~---~~~~~~l~~H~~~V~~v~fspdg~ 203 (611)
T 1nr0_A 134 FDTGT--SNGNLTGQARAMNSVDFKPSRPFRIIS-----GSDDNTVAIFEGPP---FKFKSTFGEHTKFVHSVRYNPDGS 203 (611)
T ss_dssp TTTCC--BCBCCCCCSSCEEEEEECSSSSCEEEE-----EETTSCEEEEETTT---BEEEEEECCCSSCEEEEEECTTSS
T ss_pred eeCCC--CcceecCCCCCceEEEECCCCCeEEEE-----EeCCCeEEEEECCC---CeEeeeeccccCceEEEEECCCCC
Confidence 88543 223345567789999999985545553 35667999999876 666777778888999999999999
Q ss_pred eEEEEEEecccccCceeeccee--EEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeE
Q 013884 155 GLLAVAQSDVDKTNQSYYGESK--LNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPI 231 (434)
Q Consensus 155 ~l~~~~~~~~d~~~~~~~g~~~--l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~ 231 (434)
.|+. ...|.+.+.|..... +..+. . .......+.+.|.+++|+|+|+.|+ +++.|+.|++||++. ..+
T Consensus 204 ~las---~s~D~~i~lwd~~~g~~~~~~~--~--~~~~~~~h~~~V~~v~~spdg~~l~--s~s~D~~v~lWd~~~~~~~ 274 (611)
T 1nr0_A 204 LFAS---TGGDGTIVLYNGVDGTKTGVFE--D--DSLKNVAHSGSVFGLTWSPDGTKIA--SASADKTIKIWNVATLKVE 274 (611)
T ss_dssp EEEE---EETTSCEEEEETTTCCEEEECB--C--TTSSSCSSSSCEEEEEECTTSSEEE--EEETTSEEEEEETTTTEEE
T ss_pred EEEE---EECCCcEEEEECCCCcEeeeec--c--ccccccccCCCEEEEEECCCCCEEE--EEeCCCeEEEEeCCCCcee
Confidence 7544 335666665532211 00000 0 0000114678999999999999988 677899999999853 211
Q ss_pred E-------------------------------------------E--cCCcCeeEEEECCCCCeEEEEecCCCCCeEEEE
Q 013884 232 L-------------------------------------------E--LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW 266 (434)
Q Consensus 232 ~-------------------------------------------~--~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iw 266 (434)
. . -|...+++++|+|+|++|++++ .+|.|++|
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s---~D~~v~~W 351 (611)
T 1nr0_A 275 KTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSAD---AEGHINSW 351 (611)
T ss_dssp EEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSCEEEE
T ss_pred eeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEe---CCCcEEEE
Confidence 1 1 2567899999999999999999 55799999
Q ss_pred EccCCEEEEEee--------------------------------------------------------------------
Q 013884 267 DYVDGKQLGTTR-------------------------------------------------------------------- 278 (434)
Q Consensus 267 d~~~~~~i~~~~-------------------------------------------------------------------- 278 (434)
|+.+++....+.
T Consensus 352 d~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~ 431 (611)
T 1nr0_A 352 DISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY 431 (611)
T ss_dssp ETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEES
T ss_pred ECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeC
Confidence 987664332210
Q ss_pred ----------------CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCcee---e-eeecccceeeEEEcCCCC
Q 013884 279 ----------------AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF---F-KKMFDKLFQAEWKPVSPD 338 (434)
Q Consensus 279 ----------------~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~---~-~~~~~~~~~~~w~p~~~~ 338 (434)
...+..++|||||++|++++. |+.|+||++.+..+ . ..+...+..+.|+|++..
T Consensus 432 ~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~------D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~ 505 (611)
T 1nr0_A 432 KHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQ------DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF 505 (611)
T ss_dssp SEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEET------TSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCC------CCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCE
Confidence 012345899999999999999 99999999977533 1 234567999999999988
Q ss_pred CCCCc
Q 013884 339 KFGDI 343 (434)
Q Consensus 339 ~~~~~ 343 (434)
++...
T Consensus 506 las~s 510 (611)
T 1nr0_A 506 LVATD 510 (611)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 77653
No 9
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.8e-32 Score=260.66 Aligned_cols=275 Identities=11% Similarity=0.115 Sum_probs=196.7
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEc-------CC-----CcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKT-------ET-----GEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT 69 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~-------~~-----g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~ 69 (434)
|.+++|||||++|++.+ |..+++||. .. +.+...+.. ...+.+++|+||+.+++.+.+
T Consensus 33 v~~~~fs~dG~~l~~~s------d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~s~d~~l~~~s~d 102 (344)
T 4gqb_B 33 LEAARYRSDGALLLGAS------SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQT----EAGVADLTWVGERGILVASDS 102 (344)
T ss_dssp EEEEEECTTSCEEEEEE------CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEE----SSCEEEEEEETTTEEEEEETT
T ss_pred EEEEEECCCCCEEEEEe------CCceEEeeceeeeeccccccCCcceeeeeecc----CCCEEEEEEeCCCeEEEEECC
Confidence 67999999999999887 344555542 11 111112222 256779999999877766678
Q ss_pred CeEEEEeCCCCCCceeee----eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013884 70 NEIQFFDTTDFPKGILYR----LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV 145 (434)
Q Consensus 70 ~~i~v~~~~~~~~~~~~~----~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~ 145 (434)
++|+|||+.......... .|...|.+++|+|+ +..++. ++.++.|++|++.+ ++.+.....|...+.
T Consensus 103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spd-g~~l~s-----gs~d~~i~iwd~~~---~~~~~~~~~h~~~V~ 173 (344)
T 4gqb_B 103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSS-GTQAVS-----GSKDICIKVWDLAQ---QVVLSSYRAHAAQVT 173 (344)
T ss_dssp SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTT-SSEEEE-----EETTSCEEEEETTT---TEEEEEECCCSSCEE
T ss_pred CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCC-CCEEEE-----EeCCCeEEEEECCC---CcEEEEEcCcCCceE
Confidence 999999998765433322 34567999999998 455553 35667899999988 788888888999999
Q ss_pred EEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec---CCCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 013884 146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL---RKEGPVHDVQWSYSGSEFAVVYGFMPASAT 222 (434)
Q Consensus 146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l---~~~~~i~~~~wspdg~~~av~~g~~~~~i~ 222 (434)
.+.|++++..+++.++ .|.+.+.| ++... .....+ .+...+.+++|+|++..+++ +|..|+.|+
T Consensus 174 ~~~~~~~~~~~l~s~s--~D~~v~iw---------d~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~l~-sg~~dg~v~ 240 (344)
T 4gqb_B 174 CVAASPHKDSVFLSCS--EDNRILLW---------DTRCP-KPASQIGCSAPGYLPTSLAWHPQQSEVFV-FGDENGTVS 240 (344)
T ss_dssp EEEECSSCTTEEEEEE--TTSCEEEE---------ETTSS-SCEEECC----CCCEEEEEECSSCTTEEE-EEETTSEEE
T ss_pred EEEecCCCCCceeeec--cccccccc---------ccccc-ceeeeeecceeeccceeeeecCCCCcceE-EeccCCcEE
Confidence 9999999987655433 44444433 22222 111112 12457899999997655443 588899999
Q ss_pred EEecc-ceeEEEc--CCcCeeEEEECCCC-CeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCE-EE
Q 013884 223 IFNKK-CRPILEL--GSGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRY-FM 295 (434)
Q Consensus 223 l~d~~-~~~~~~~--~~~~~~~i~~sP~g-~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~-l~ 295 (434)
+||++ ++.+..+ |...+++++|+|+| ++|++++ .+|.|+|||+.+++++.. .+| .+..++|||+|++ |+
T Consensus 241 ~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs---~D~~i~vwd~~~~~~~~~-~~H~~~V~~v~~sp~~~~lla 316 (344)
T 4gqb_B 241 LVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLS---EDCSLAVLDSSLSELFRS-QAHRDFVRDATWSPLNHSLLT 316 (344)
T ss_dssp EEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEE---TTSCEEEECTTCCEEEEE-CCCSSCEEEEEECSSSTTEEE
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEe---CCCeEEEEECCCCcEEEE-cCCCCCEEEEEEeCCCCeEEE
Confidence 99996 3444444 78999999999998 5788888 567999999999987654 444 5667999999975 56
Q ss_pred EEEcCCceeeCCcEEEEeecCce
Q 013884 296 TATTAPRLQIDNGIKIFHHNGSL 318 (434)
Q Consensus 296 tas~~~rl~~D~~i~iw~~~g~~ 318 (434)
+++. |+.|++|++..+.
T Consensus 317 s~s~------D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 317 TVGW------DHQVVHHVVPTEP 333 (344)
T ss_dssp EEET------TSCEEEEECCC--
T ss_pred EEcC------CCeEEEEECCCCC
Confidence 7888 9999999986543
No 10
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.4e-31 Score=249.34 Aligned_cols=276 Identities=13% Similarity=0.094 Sum_probs=210.8
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|++|+|||+|++|+|++ .|+.|+|||+.++++++.+..+. ..+.+++|+||+++|++++ |++|++||+...
T Consensus 16 V~~~~fsp~~~~l~s~~-----~dg~v~lWd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~ 87 (304)
T 2ynn_A 16 VKGIDFHPTEPWVLTTL-----YSGRVELWNYETQVEVRSIQVTE---TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87 (304)
T ss_dssp EEEEEECSSSSEEEEEE-----TTSEEEEEETTTTEEEEEEECCS---SCEEEEEEEGGGTEEEEEETTSEEEEEETTTC
T ss_pred eEEEEECCCCCEEEEEc-----CCCcEEEEECCCCceeEEeeccC---CcEEEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 78999999999999999 89999999999999998887654 5677999999999999985 579999999887
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC-CCeEEEE
Q 013884 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG-STGLLAV 159 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~-G~~l~~~ 159 (434)
........|...|.+++|+|+ +.+++. ++.++.|++|++... .........|...+.++.|+|+ +..|+.
T Consensus 88 ~~~~~~~~h~~~v~~~~~~~~-~~~l~s-----gs~D~~v~lWd~~~~--~~~~~~~~~h~~~v~~v~~~p~~~~~l~s- 158 (304)
T 2ynn_A 88 EKVVDFEAHPDYIRSIAVHPT-KPYVLS-----GSDDLTVKLWNWENN--WALEQTFEGHEHFVMCVAFNPKDPSTFAS- 158 (304)
T ss_dssp CEEEEEECCSSCEEEEEECSS-SSEEEE-----EETTSCEEEEEGGGT--TEEEEEECCCCSCEEEEEECTTCTTEEEE-
T ss_pred cEEEEEeCCCCcEEEEEEcCC-CCEEEE-----ECCCCeEEEEECCCC--cchhhhhcccCCcEEEEEECCCCCCEEEE-
Confidence 654555567778999999998 455543 356789999999762 2344556678888999999995 555433
Q ss_pred EEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECc--CCCEEEEEEccCCCeEEEEeccc-eeEEEc--
Q 013884 160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY--SGSEFAVVYGFMPASATIFNKKC-RPILEL-- 234 (434)
Q Consensus 160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wsp--dg~~~av~~g~~~~~i~l~d~~~-~~~~~~-- 234 (434)
...|.+.+. |.+..... ...+...+...+..++|+| ++..++ +++.|+.|++||++. ..+..+
T Consensus 159 --gs~D~~v~i-------wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~--s~s~D~~i~iWd~~~~~~~~~~~~ 226 (304)
T 2ynn_A 159 --GCLDRTVKV-------WSLGQSTP-NFTLTTGQERGVNYVDYYPLPDKPYMI--TASDDLTIKIWDYQTKSCVATLEG 226 (304)
T ss_dssp --EETTSEEEE-------EETTCSSC-SEEEECCCTTCEEEEEECCSTTCCEEE--EEETTSEEEEEETTTTEEEEEEEC
T ss_pred --EeCCCeEEE-------EECCCCCc-cceeccCCcCcEEEEEEEEcCCCCEEE--EEcCCCeEEEEeCCCCccceeeCC
Confidence 224544443 33211111 1222233467899999987 566666 688899999999964 444444
Q ss_pred CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCC--EEEEEEcCCceeeCCcEE
Q 013884 235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGR--YFMTATTAPRLQIDNGIK 310 (434)
Q Consensus 235 ~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~--~l~tas~~~rl~~D~~i~ 310 (434)
|...+++++|+|++++|++++ .+|.|+|||+.+++.+..+..+ .+..++|+|+|. +++++ . |+++.
T Consensus 227 h~~~v~~~~~~p~~~~l~s~s---~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg-~------~~g~~ 296 (304)
T 2ynn_A 227 HMSNVSFAVFHPTLPIIISGS---EDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG-F------DNGFT 296 (304)
T ss_dssp CSSCEEEEEECSSSSEEEEEE---TTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEE-E------TTEEE
T ss_pred CCCCEEEEEECCCCCEEEEEc---CCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEe-c------CCceE
Confidence 788999999999999999999 5679999999999999888765 556799999986 45554 4 88999
Q ss_pred EEeecC
Q 013884 311 IFHHNG 316 (434)
Q Consensus 311 iw~~~g 316 (434)
+|++..
T Consensus 297 ~~~~~~ 302 (304)
T 2ynn_A 297 VLSLGN 302 (304)
T ss_dssp EEECC-
T ss_pred EEEecc
Confidence 998754
No 11
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.6e-31 Score=270.42 Aligned_cols=297 Identities=16% Similarity=0.235 Sum_probs=233.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|.+++|+|+|++|++.+ .|+.|++||. +++.+..+..+. ..+.+++|+||+++++++. ++.|++|+....
T Consensus 265 v~~v~~~~d~~~l~~~~-----~d~~i~~w~~-~~~~~~~~~~h~---~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~ 335 (577)
T 2ymu_A 265 VNGVAFRPDGQTIASAS-----DDKTVKLWNR-NGQLLQTLTGHS---SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ 335 (577)
T ss_dssp EEEEEECTTSSEEEEEE-----TTSCEEEEET-TSCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSC
T ss_pred EEEEEEcCCCCEEEEEe-----CCCEEEEEeC-CCcEEEEEecCC---CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Confidence 67899999999999998 8899999995 567777776543 5666999999999999885 579999997653
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
. ......+...+..++|+|+ +..++.- ..++.+++|+.. .+.+.....+...+..+.|+|+|+.|+...
T Consensus 336 ~-~~~~~~~~~~v~~~~~s~~-g~~l~~~-----~~dg~v~~~~~~----~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 404 (577)
T 2ymu_A 336 H-LQTLTGHSSSVWGVAFSPD-GQTIASA-----SDDKTVKLWNRN----GQLLQTLTGHSSSVRGVAFSPDGQTIASAS 404 (577)
T ss_dssp E-EEEECCCSSCEEEEEECTT-SSEEEEE-----ETTSEEEEEETT----CCEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred e-eEEEeCCCCCEEEEEECCC-CCEEEEE-----eCCCEEEEEcCC----CCEEEEecCCCCCeEEEEECCCCCEEEEEe
Confidence 2 2333445567999999998 4555532 345789999963 466777788888999999999999876532
Q ss_pred EecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc--CCcC
Q 013884 161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGP 238 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~--~~~~ 238 (434)
.|... .+++..+.. ......+...|.+++|+||++.++ ++..|+.+.+||..+..+..+ |...
T Consensus 405 ---~d~~v---------~~~~~~~~~-~~~~~~~~~~v~~~~~s~d~~~l~--~~~~d~~v~~w~~~~~~~~~~~~~~~~ 469 (577)
T 2ymu_A 405 ---DDKTV---------KLWNRNGQL-LQTLTGHSSSVWGVAFSPDDQTIA--SASDDKTVKLWNRNGQLLQTLTGHSSS 469 (577)
T ss_dssp ---TTSEE---------EEECTTCCE-EEEEECCSSCEEEEEECTTSSEEE--EEETTSEEEEEETTSCEEEEEECCSSC
T ss_pred ---CCCEE---------EEEeCCCCE-EEEecCCCCCeEEEEECCCCCEEE--EEcCCCEEEEEECCCCEEEEEcCCCCC
Confidence 33333 333333321 122233578999999999999988 467789999999987766655 7889
Q ss_pred eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884 239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 239 ~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
+++++|+|+|++|++++ .++.|++||. +++++..+.+| .+..++|||||++|++++. |+.|+|||++|
T Consensus 470 v~~~~~spd~~~las~~---~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~------dg~v~lwd~~~ 539 (577)
T 2ymu_A 470 VRGVAFSPDGQTIASAS---DDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASD------DKTVKLWNRNG 539 (577)
T ss_dssp EEEEEECTTSCEEEEEE---TTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEET------TSEEEEECTTS
T ss_pred EEEEEEcCCCCEEEEEe---CCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEEC------cCEEEEEeCCC
Confidence 99999999999999998 5679999995 56777778776 5667999999999999999 99999999999
Q ss_pred ceeeee--ecccceeeEEEcCCCCCCCCc
Q 013884 317 SLFFKK--MFDKLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 317 ~~~~~~--~~~~~~~~~w~p~~~~~~~~~ 343 (434)
+++... +...+..+.|.|++..+++..
T Consensus 540 ~~~~~~~~h~~~v~~~~fs~dg~~l~s~~ 568 (577)
T 2ymu_A 540 QLLQTLTGHSSSVWGVAFSPDGQTIASAS 568 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred CEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 887654 557899999999998887653
No 12
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=8.2e-31 Score=271.33 Aligned_cols=296 Identities=13% Similarity=0.076 Sum_probs=220.0
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
+.+++|||||++|++.+ ++.|+||++.+++.+..+.++. ..+.+++|||||++||+++ |++|+|||+...
T Consensus 21 ~~~~~~spdg~~l~~~~------~~~v~l~~~~~~~~~~~~~~h~---~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~ 91 (611)
T 1nr0_A 21 AVVLGNTPAGDKIQYCN------GTSVYTVPVGSLTDTEIYTEHS---HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT 91 (611)
T ss_dssp CCCCEECTTSSEEEEEE------TTEEEEEETTCSSCCEEECCCS---SCEEEEEECTTSSEEEEEETTSEEEEEESSST
T ss_pred eeEEeeCCCCCEEEeCC------CCEEEEecCCCcccCeEecCCC---CceEEEEECCCCcEEEEEeCCCCEEEeECCCC
Confidence 46789999999999976 4699999999998888887654 6677999999999999995 679999998654
Q ss_pred CCce--eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013884 81 PKGI--LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 81 ~~~~--~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~ 158 (434)
.... ....+...|.+++|+|+ +..++.... .....+.|++|+. +..+.....|...+..+.|+|++...++
T Consensus 92 ~~~~~~~~~~~~~~v~~v~fs~d-g~~l~~~~~-~~~~~~~v~~wd~-----~~~~~~l~gh~~~v~~v~f~p~~~~~l~ 164 (611)
T 1nr0_A 92 THILKTTIPVFSGPVKDISWDSE-SKRIAAVGE-GRERFGHVFLFDT-----GTSNGNLTGQARAMNSVDFKPSRPFRII 164 (611)
T ss_dssp TCCEEEEEECSSSCEEEEEECTT-SCEEEEEEC-CSSCSEEEEETTT-----CCBCBCCCCCSSCEEEEEECSSSSCEEE
T ss_pred cceeeEeecccCCceEEEEECCC-CCEEEEEEC-CCCceeEEEEeeC-----CCCcceecCCCCCceEEEECCCCCeEEE
Confidence 3222 22344567999999999 455543321 1223457888875 4556667788889999999999986444
Q ss_pred EEEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc--
Q 013884 159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL-- 234 (434)
Q Consensus 159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~-- 234 (434)
. ...|.+.+.|.... . .....+ .+.+.|.+++|+|||+.|+ +++.|+.|++||+. +..+..+
T Consensus 165 s--~s~D~~v~lwd~~~---------~-~~~~~l~~H~~~V~~v~fspdg~~la--s~s~D~~i~lwd~~~g~~~~~~~~ 230 (611)
T 1nr0_A 165 S--GSDDNTVAIFEGPP---------F-KFKSTFGEHTKFVHSVRYNPDGSLFA--STGGDGTIVLYNGVDGTKTGVFED 230 (611)
T ss_dssp E--EETTSCEEEEETTT---------B-EEEEEECCCSSCEEEEEECTTSSEEE--EEETTSCEEEEETTTCCEEEECBC
T ss_pred E--EeCCCeEEEEECCC---------C-eEeeeeccccCceEEEEECCCCCEEE--EEECCCcEEEEECCCCcEeeeecc
Confidence 3 33566665554322 1 111222 3578999999999999988 67889999999975 3444333
Q ss_pred -------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe------------------------------
Q 013884 235 -------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT------------------------------ 277 (434)
Q Consensus 235 -------~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~------------------------------ 277 (434)
|.+.+.+++|+|+|++|++++ .+++|+|||+.+++++..+
T Consensus 231 ~~~~~~~h~~~V~~v~~spdg~~l~s~s---~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~ 307 (611)
T 1nr0_A 231 DSLKNVAHSGSVFGLTWSPDGTKIASAS---ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFIN 307 (611)
T ss_dssp TTSSSCSSSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEE
T ss_pred ccccccccCCCEEEEEECCCCCEEEEEe---CCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEE
Confidence 678899999999999999999 5579999999988765433
Q ss_pred -------------eCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeee---eecccceeeEEEcCC
Q 013884 278 -------------RAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFK---KMFDKLFQAEWKPVS 336 (434)
Q Consensus 278 -------------~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~-~~~~---~~~~~~~~~~w~p~~ 336 (434)
.+| .+..++|+|||++|++++. |+.|++||+... +... .+...+..+.|.|..
T Consensus 308 ~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~------D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~ 379 (611)
T 1nr0_A 308 FVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADA------EGHINSWDISTGISNRVFPDVHATMITGIKTTSKG 379 (611)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET------TSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS
T ss_pred EEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeC------CCcEEEEECCCCceeeecccCCcceEEEEEECCCC
Confidence 233 4566999999999999999 999999999544 3222 244567888888654
No 13
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-30 Score=245.03 Aligned_cols=286 Identities=16% Similarity=0.219 Sum_probs=215.5
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|++|+|||+|++|++++ .|+.|+|||+.+++.+..+..+. ..+.+++|+||+++|+++. ++.|++||+...
T Consensus 35 v~~~~~s~~~~~l~~~~-----~dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 106 (369)
T 3zwl_B 35 LTQVKYNKEGDLLFSCS-----KDSSASVWYSLNGERLGTLDGHT---GTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG 106 (369)
T ss_dssp EEEEEECTTSCEEEEEE-----SSSCEEEEETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred EEEEEEcCCCCEEEEEe-----CCCEEEEEeCCCchhhhhhhhcC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 78999999999999998 88999999999999998887643 6677999999999999884 679999999876
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC--------Cceeeeeeccc--ceeEEEEC
Q 013884 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS--------QPLARRSFFRC--STVQLNWN 150 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~--------~~i~~~~~~~~--~~~~~~ws 150 (434)
....... +...+..+.|+|+ +..+++...+....++.|.+|++...... ..+.....+.. .+..+.|+
T Consensus 107 ~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (369)
T 3zwl_B 107 QCVATWK-SPVPVKRVEFSPC-GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWS 184 (369)
T ss_dssp CEEEEEE-CSSCEEEEEECTT-SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEEC
T ss_pred cEEEEee-cCCCeEEEEEccC-CCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEc
Confidence 5433333 4557999999998 45555544333344579999999763211 12333333433 78899999
Q ss_pred CCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-
Q 013884 151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC- 228 (434)
Q Consensus 151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~- 228 (434)
|+|+.|++.. .|.. ++.+++.........+ .+.++|.+++|+|+++.|+ ++..++.|.+||++.
T Consensus 185 ~~~~~l~~~~---~dg~---------i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 185 TKGKYIIAGH---KDGK---------ISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFI--TSSRDTNSFLVDVSTL 250 (369)
T ss_dssp GGGCEEEEEE---TTSE---------EEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEE--EEETTSEEEEEETTTC
T ss_pred CCCCEEEEEc---CCCE---------EEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEE--EecCCceEEEEECCCC
Confidence 9999876532 2222 3444443312222222 2578999999999999988 467789999999964
Q ss_pred eeEEEc-CCcCeeEEEECCCCCeEEEEecCCC-----------CCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEE
Q 013884 229 RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNL-----------PGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYF 294 (434)
Q Consensus 229 ~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~-----------~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l 294 (434)
..+..+ +...+..+.|+|+|+++++++.++. ...+.+||..+++.+..+.+| .+..++|+|||++|
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 330 (369)
T 3zwl_B 251 QVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSY 330 (369)
T ss_dssp CEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred ceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEE
Confidence 444444 6788999999999999999884320 117999999999988888776 56669999999999
Q ss_pred EEEEcCCceeeCCcEEEEeecCc
Q 013884 295 MTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 295 ~tas~~~rl~~D~~i~iw~~~g~ 317 (434)
++++. |+.|+||++...
T Consensus 331 ~s~~~------dg~v~iw~~~~~ 347 (369)
T 3zwl_B 331 ASGGE------DGFIRLHHFEKS 347 (369)
T ss_dssp EEEET------TSEEEEEEECHH
T ss_pred EEEcC------CCeEEEEECccc
Confidence 99999 999999999664
No 14
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.4e-30 Score=253.23 Aligned_cols=283 Identities=13% Similarity=0.133 Sum_probs=205.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc---------------CCCCCCeeeecCCCcEEEE
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM---------------TKTTWPSIRFSSDEAVACR 66 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~---------------~~~~~~~~~~S~d~~~la~ 66 (434)
|.+++|||||++|++.+ ++.++||++.+|+.+..+..+.. +...+.+++|+|||++|++
T Consensus 67 V~~v~fspdg~~la~g~------~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 67 VCCVKFSNDGEYLATGC------NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp CCEEEECTTSSEEEEEC------BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred EEEEEECCCCCEEEEEc------CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 78999999999999865 57899999999998877754321 0012568999999999999
Q ss_pred ec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013884 67 MA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV 145 (434)
Q Consensus 67 ~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~ 145 (434)
++ +++|+|||+...........|...|.+++|+|++ ..++. .+.++.|++|++.+ ++...... +...+.
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s-----~s~d~~v~iwd~~~---~~~~~~~~-~~~~v~ 210 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG-DKLVS-----GSGDRTVRIWDLRT---GQCSLTLS-IEDGVT 210 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEE-----EETTSEEEEEETTT---TEEEEEEE-CSSCEE
T ss_pred EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC-CEEEE-----ecCCCcEEEEECCC---CeeEEEEE-cCCCcE
Confidence 85 6799999998755434444566789999999984 44443 34568999999977 55544443 445678
Q ss_pred EEEECC-CCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 013884 146 QLNWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIF 224 (434)
Q Consensus 146 ~~~ws~-~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~ 224 (434)
.+.|+| +|..|+.. ..|.+.+.|............. .......+...|.+++|+|+|+.|+ +|..|+.|++|
T Consensus 211 ~~~~~~~~~~~l~~~---s~d~~v~iwd~~~~~~~~~~~~--~~~~~~~h~~~v~~v~~~~~g~~l~--s~s~d~~v~~w 283 (393)
T 1erj_A 211 TVAVSPGDGKYIAAG---SLDRAVRVWDSETGFLVERLDS--ENESGTGHKDSVYSVVFTRDGQSVV--SGSLDRSVKLW 283 (393)
T ss_dssp EEEECSTTCCEEEEE---ETTSCEEEEETTTCCEEEEEC--------CCCSSCEEEEEECTTSSEEE--EEETTSEEEEE
T ss_pred EEEEECCCCCEEEEE---cCCCcEEEEECCCCcEEEeecc--cccCCCCCCCCEEEEEECCCCCEEE--EEeCCCEEEEE
Confidence 899999 78875443 2455555443221100000000 0000123578999999999999988 67889999999
Q ss_pred eccce-------------eEE--EcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEE
Q 013884 225 NKKCR-------------PIL--ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEW 287 (434)
Q Consensus 225 d~~~~-------------~~~--~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~w 287 (434)
|++.. ... ..|...+.+++|+|+|++|++++ .+|.|++||..+++.+..+.+| .+..++|
T Consensus 284 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs---~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~ 360 (393)
T 1erj_A 284 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS---KDRGVLFWDKKSGNPLLMLQGHRNSVISVAV 360 (393)
T ss_dssp EC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE---TTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred ECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEe---CCCeEEEEECCCCeEEEEECCCCCCEEEEEe
Confidence 98531 122 23778899999999999999999 5679999999999988888877 4566888
Q ss_pred CC------CCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884 288 SP------DGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 288 sp------dg~~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
+| ++.+|++++. |+.|+||++..
T Consensus 361 ~~~~~~~p~~~~l~sgs~------Dg~i~iW~~~~ 389 (393)
T 1erj_A 361 ANGSSLGPEYNVFATGSG------DCKARIWKYKK 389 (393)
T ss_dssp CSSCTTCTTCEEEEEEET------TSEEEEEEEEE
T ss_pred cCCcCcCCCCCEEEEECC------CCcEEECcccc
Confidence 76 7899999999 99999999854
No 15
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=8e-30 Score=240.99 Aligned_cols=275 Identities=11% Similarity=0.123 Sum_probs=210.3
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|++++|||+|++|++++ .|+.|+||++.+++.+..+..+. ..+.+++|+||+++|++++ ++.|++||+...
T Consensus 26 v~~~~~s~~~~~l~s~~-----~dg~i~iw~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 97 (312)
T 4ery_A 26 VSSVKFSPNGEWLASSS-----ADKLIKIWGAYDGKFEKTISGHK---LGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 97 (312)
T ss_dssp EEEEEECTTSSEEEEEE-----TTSCEEEEETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred EEEEEECCCCCEEEEee-----CCCeEEEEeCCCcccchhhccCC---CceEEEEEcCCCCEEEEECCCCEEEEEECCCC
Confidence 78999999999999999 89999999999999888876543 6677999999999999885 679999999876
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
........+...|..+.|+|+ +..++. ++.++.|++|++.+ .+.+.....+...+..+.|+|+|+.++...
T Consensus 98 ~~~~~~~~~~~~v~~~~~~~~-~~~l~s-----~~~d~~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 168 (312)
T 4ery_A 98 KCLKTLKGHSNYVFCCNFNPQ-SNLIVS-----GSFDESVRIWDVKT---GKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 168 (312)
T ss_dssp CEEEEEECCSSCEEEEEECSS-SSEEEE-----EETTSCEEEEETTT---CCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred cEEEEEcCCCCCEEEEEEcCC-CCEEEE-----EeCCCcEEEEECCC---CEEEEEecCCCCcEEEEEEcCCCCEEEEEe
Confidence 644444556677999999998 445443 34567899999987 677777778888899999999999765432
Q ss_pred EecccccCceeecceeEEEEeeCCCce-eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEEEc--CC
Q 013884 161 QSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GS 236 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~~--~~ 236 (434)
.|...+ .++...... ..+......++..++|+|+++.|+ ++..++.|++||++. ..+..+ +.
T Consensus 169 ---~d~~i~---------~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~d~~i~iwd~~~~~~~~~~~~~~ 234 (312)
T 4ery_A 169 ---YDGLCR---------IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL--AATLDNTLKLWDYSKGKCLKTYTGHK 234 (312)
T ss_dssp ---TTSCEE---------EEETTTCCEEEEECCSSCCCEEEEEECTTSSEEE--EEETTTEEEEEETTTTEEEEEECSSC
T ss_pred ---CCCcEE---------EEECCCCceeeEEeccCCCceEEEEECCCCCEEE--EEcCCCeEEEEECCCCcEEEEEEecC
Confidence 344333 333322211 112223457899999999999988 477789999999964 444444 33
Q ss_pred cCe---eEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEc-CCceeeCCcEE
Q 013884 237 GPY---NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATT-APRLQIDNGIK 310 (434)
Q Consensus 237 ~~~---~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~-~~rl~~D~~i~ 310 (434)
... ......+++++|++++ .+|.|++||+.+++.+..+.+| .+..++|+|++.+|++++. . |+.|+
T Consensus 235 ~~~~~~~~~~~~~~~~~l~sg~---~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~-----d~~i~ 306 (312)
T 4ery_A 235 NEKYCIFANFSVTGGKWIVSGS---EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN-----DKTIK 306 (312)
T ss_dssp CSSSCCCEEEECSSSCEEEECC---TTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTT-----TCCEE
T ss_pred CceEEEEEEEEeCCCcEEEEEC---CCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccC-----CccEE
Confidence 222 2233446788999888 5679999999999999988877 4566999999999999972 2 89999
Q ss_pred EEeec
Q 013884 311 IFHHN 315 (434)
Q Consensus 311 iw~~~ 315 (434)
||+.+
T Consensus 307 ~W~~d 311 (312)
T 4ery_A 307 LWKSD 311 (312)
T ss_dssp EEECC
T ss_pred EecCC
Confidence 99864
No 16
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6.3e-30 Score=243.13 Aligned_cols=273 Identities=14% Similarity=0.175 Sum_probs=204.9
Q ss_pred cceEEecCCC-cEEEEEecCCCCCCCcEEEEEcCC-----CcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEE
Q 013884 2 LLLLTCLRVG-LIIQTFQKSSTPQEKNVILWKTET-----GEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQF 74 (434)
Q Consensus 2 V~~l~fSP~g-~~L~t~~~~~~~~d~~v~iWd~~~-----g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v 74 (434)
|++|+|||++ ++|+|++ .|+.|+|||+.+ +.++..+..+. ..+.++.|+||+++|++++ |++|++
T Consensus 20 V~~l~~~~~~~~~l~s~s-----~D~~v~~W~~~~~~~~~~~~~~~~~~h~---~~v~~~~~s~dg~~l~s~s~D~~v~~ 91 (319)
T 3frx_A 20 VTSLATSAGQPNLLLSAS-----RDKTLISWKLTGDDQKFGVPVRSFKGHS---HIVQDCTLTADGAYALSASWDKTLRL 91 (319)
T ss_dssp EEEEEECSSCTTEEEEEE-----TTSEEEEEEEEEETTEEEEEEEEEECCS---SCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EEEEEccCCCccEEEEec-----CCccEEEecCCCCCccccccceEEeCCc---ccEEEEEECCCCCEEEEEeCCCEEEE
Confidence 7899999965 8999999 899999999864 33456666543 6777999999999999985 689999
Q ss_pred EeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013884 75 FDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST 154 (434)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~ 154 (434)
||+...........|...|.+++|+|+ +..++. ++.++.|++|++.. ..+.....|...+..+.|+|.+.
T Consensus 92 wd~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s-----~s~D~~i~vwd~~~----~~~~~~~~h~~~v~~~~~~~~~~ 161 (319)
T 3frx_A 92 WDVATGETYQRFVGHKSDVMSVDIDKK-ASMIIS-----GSRDKTIKVWTIKG----QCLATLLGHNDWVSQVRVVPNEK 161 (319)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEECTT-SCEEEE-----EETTSCEEEEETTS----CEEEEECCCSSCEEEEEECCC--
T ss_pred EECCCCCeeEEEccCCCcEEEEEEcCC-CCEEEE-----EeCCCeEEEEECCC----CeEEEEeccCCcEEEEEEccCCC
Confidence 999886544444556778999999998 444443 35667999999853 56666777888888999998643
Q ss_pred e-----EEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-
Q 013884 155 G-----LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC- 228 (434)
Q Consensus 155 ~-----l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~- 228 (434)
. +++ +...|...+.| +............+..+|.+++|+|+|+.|+ ++..|+.|++||++.
T Consensus 162 ~~~~~~~l~--s~~~d~~i~~w---------d~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~--s~~~dg~i~iwd~~~~ 228 (319)
T 3frx_A 162 ADDDSVTII--SAGNDKMVKAW---------NLNQFQIEADFIGHNSNINTLTASPDGTLIA--SAGKDGEIMLWNLAAK 228 (319)
T ss_dssp ----CCEEE--EEETTSCEEEE---------ETTTTEEEEEECCCCSCEEEEEECTTSSEEE--EEETTCEEEEEETTTT
T ss_pred CCCCccEEE--EEeCCCEEEEE---------ECCcchhheeecCCCCcEEEEEEcCCCCEEE--EEeCCCeEEEEECCCC
Confidence 1 222 22245444433 2222211122234578999999999999988 678899999999964
Q ss_pred eeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC----------CceEEEECCCCCEEEEE
Q 013884 229 RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE----------CSVTSEWSPDGRYFMTA 297 (434)
Q Consensus 229 ~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~----------~~~~~~wspdg~~l~ta 297 (434)
..+..+ +...+.+++|+|+|.+|+++.. +.+++|+++....+..+..+ .+..++|||||++|+++
T Consensus 229 ~~~~~~~~~~~v~~~~~sp~~~~la~~~~----~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg 304 (319)
T 3frx_A 229 KAMYTLSAQDEVFSLAFSPNRYWLAAATA----TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAG 304 (319)
T ss_dssp EEEEEEECCSCEEEEEECSSSSEEEEEET----TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEE
T ss_pred cEEEEecCCCcEEEEEEcCCCCEEEEEcC----CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEe
Confidence 444554 5678999999999999988763 35999999988776655421 35569999999999999
Q ss_pred EcCCceeeCCcEEEEeec
Q 013884 298 TTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 298 s~~~rl~~D~~i~iw~~~ 315 (434)
+. |+.|+||++.
T Consensus 305 ~~------Dg~i~vWd~~ 316 (319)
T 3frx_A 305 YT------DNVIRVWQVM 316 (319)
T ss_dssp ET------TSCEEEEEEE
T ss_pred ec------CceEEEEEEe
Confidence 99 9999999984
No 17
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1e-29 Score=241.49 Aligned_cols=273 Identities=13% Similarity=0.137 Sum_probs=209.4
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEE---EEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAV---YQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDT 77 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~---~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~ 77 (434)
|++++|||+|++|++.+ |+.|+|||+.+++.. ..+.... +...+.++.|+||+++|+++. ++.|++|++
T Consensus 54 v~~~~~~~~~~~l~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~ 126 (337)
T 1gxr_A 54 VCAVTISNPTRHVYTGG------KGCVKVWDISHPGNKSPVSQLDCLN-RDNYIRSCKLLPDGCTLIVGGEASTLSIWDL 126 (337)
T ss_dssp CCEEEECSSSSEEEEEC------BSEEEEEETTSTTCCSCSEEEECSC-TTSBEEEEEECTTSSEEEEEESSSEEEEEEC
T ss_pred eEEEEEecCCcEEEEcC------CCeEEEEECCCCCceeeeecccccC-CCCcEEEEEEcCCCCEEEEEcCCCcEEEEEC
Confidence 78999999999999875 689999999887532 3332111 336677999999999998885 679999999
Q ss_pred CCCCCcee--eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013884 78 TDFPKGIL--YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG 155 (434)
Q Consensus 78 ~~~~~~~~--~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~ 155 (434)
........ ...+...+..+.|+|+ +..+++- +.++.|++|++.+ .+.+.....+...+..+.|+|+|+.
T Consensus 127 ~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~-----~~dg~v~~~d~~~---~~~~~~~~~~~~~i~~~~~~~~~~~ 197 (337)
T 1gxr_A 127 AAPTPRIKAELTSSAPACYALAISPD-SKVCFSC-----CSDGNIAVWDLHN---QTLVRQFQGHTDGASCIDISNDGTK 197 (337)
T ss_dssp CCC--EEEEEEECSSSCEEEEEECTT-SSEEEEE-----ETTSCEEEEETTT---TEEEEEECCCSSCEEEEEECTTSSE
T ss_pred CCCCcceeeecccCCCceEEEEECCC-CCEEEEE-----eCCCcEEEEeCCC---CceeeeeecccCceEEEEECCCCCE
Confidence 87653222 2334557999999998 4554432 3457899999987 6777777778888999999999998
Q ss_pred EEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc-
Q 013884 156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL- 234 (434)
Q Consensus 156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~- 234 (434)
|++.. .|.. ++.++.... .....+...+++.+++|+|+++.+++ +..++.+.+||++......+
T Consensus 198 l~~~~---~dg~---------i~~~d~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~~~~i~~~~~~~~~~~~~~ 262 (337)
T 1gxr_A 198 LWTGG---LDNT---------VRSWDLREG-RQLQQHDFTSQIFSLGYCPTGEWLAV--GMESSNVEVLHVNKPDKYQLH 262 (337)
T ss_dssp EEEEE---TTSE---------EEEEETTTT-EEEEEEECSSCEEEEEECTTSSEEEE--EETTSCEEEEETTSSCEEEEC
T ss_pred EEEEe---cCCc---------EEEEECCCC-ceEeeecCCCceEEEEECCCCCEEEE--EcCCCcEEEEECCCCCeEEEc
Confidence 76542 2222 344444333 23333445788999999999999884 66788999999976555444
Q ss_pred -CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013884 235 -GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF 312 (434)
Q Consensus 235 -~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw 312 (434)
+...+.++.|+|+|++|++++ .+|.|++||+.+++.+....+. .+..++|+|||++|++++. |+.|+||
T Consensus 263 ~~~~~v~~~~~~~~~~~l~~~~---~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iw 333 (337)
T 1gxr_A 263 LHESCVLSLKFAYCGKWFVSTG---KDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSG------DKKATVY 333 (337)
T ss_dssp CCSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEET------TSCEEEE
T ss_pred CCccceeEEEECCCCCEEEEec---CCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecC------CCeEEEE
Confidence 678899999999999999998 5679999999999877665544 5667999999999999999 9999999
Q ss_pred ee
Q 013884 313 HH 314 (434)
Q Consensus 313 ~~ 314 (434)
++
T Consensus 334 ~~ 335 (337)
T 1gxr_A 334 EV 335 (337)
T ss_dssp EE
T ss_pred EE
Confidence 96
No 18
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.98 E-value=1.6e-29 Score=258.89 Aligned_cols=297 Identities=16% Similarity=0.224 Sum_probs=230.7
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|.+++|||+|++|++.+ .|+.|+|||. +++.+..+..+. ..+.+++|+||+++++++. ++.|++|+...
T Consensus 224 v~~~~~s~dg~~l~~~~-----~d~~i~~w~~-~~~~~~~~~~~~---~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~- 293 (577)
T 2ymu_A 224 VRGVAFSPDGQTIASAS-----DDKTVKLWNR-NGQLLQTLTGHS---SSVNGVAFRPDGQTIASASDDKTVKLWNRNG- 293 (577)
T ss_dssp EEEEEECTTSSCEEEEE-----TTSCEEEECT-TSCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTS-
T ss_pred EEEEEECCCCCEEEEEe-----CCCEEEEEeC-CCCEEEEEecCC---CCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-
Confidence 67899999999999998 8999999995 577777776543 6677999999999999885 57999999754
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
........+...|..++++|+ +..++.. +.++.|++|++.. ..+.....+...+..+.|+|+|+.|+...
T Consensus 294 ~~~~~~~~h~~~v~~~~~~~~-~~~l~t~-----~~d~~i~~w~~~~----~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 363 (577)
T 2ymu_A 294 QLLQTLTGHSSSVWGVAFSPD-GQTIASA-----SDDKTVKLWNRNG----QHLQTLTGHSSSVWGVAFSPDGQTIASAS 363 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTT-SSEEEEE-----ETTSCEEEEETTS----CEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred cEEEEEecCCCCeEEEEECCC-CCEEEEE-----eCCCeEEEEeCCC----CeeEEEeCCCCCEEEEEECCCCCEEEEEe
Confidence 222333445667999999998 4555432 3457899999754 45566677788889999999999876532
Q ss_pred EecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc--CCcC
Q 013884 161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGP 238 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~--~~~~ 238 (434)
.|...+ +++..+.. ......+...|.+++|+|||+.|+ ++..++.|++||..++.+..+ |...
T Consensus 364 ---~dg~v~---------~~~~~~~~-~~~~~~~~~~v~~~~~s~dg~~l~--~~~~d~~v~~~~~~~~~~~~~~~~~~~ 428 (577)
T 2ymu_A 364 ---DDKTVK---------LWNRNGQL-LQTLTGHSSSVRGVAFSPDGQTIA--SASDDKTVKLWNRNGQLLQTLTGHSSS 428 (577)
T ss_dssp ---TTSEEE---------EEETTCCE-EEEEECCSSCEEEEEECTTSSCEE--EEETTSEEEEECTTCCEEEEEECCSSC
T ss_pred ---CCCEEE---------EEcCCCCE-EEEecCCCCCeEEEEECCCCCEEE--EEeCCCEEEEEeCCCCEEEEecCCCCC
Confidence 333332 22333321 111223578999999999999988 577789999999887766655 7889
Q ss_pred eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884 239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 239 ~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
+.+++|+||+++|++++ .++.|++||.. ++.+..+..| .+..++|+|||++|++++. |+.|+||+.+|
T Consensus 429 v~~~~~s~d~~~l~~~~---~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~------d~~i~iw~~~~ 498 (577)
T 2ymu_A 429 VWGVAFSPDDQTIASAS---DDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASD------DKTVKLWNRNG 498 (577)
T ss_dssp EEEEEECTTSSEEEEEE---TTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEET------TSEEEEEETTS
T ss_pred eEEEEECCCCCEEEEEc---CCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeC------CCEEEEEcCCC
Confidence 99999999999999998 55799999974 5566666655 5566999999999999999 99999999999
Q ss_pred ceeeee--ecccceeeEEEcCCCCCCCCc
Q 013884 317 SLFFKK--MFDKLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 317 ~~~~~~--~~~~~~~~~w~p~~~~~~~~~ 343 (434)
+++... +...+..+.|.|++..++...
T Consensus 499 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~ 527 (577)
T 2ymu_A 499 QLLQTLTGHSSSVRGVAFSPDGQTIASAS 527 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred CEEEEEeCCCCCEEEEEEcCCCCEEEEEE
Confidence 887665 446899999999998887653
No 19
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.1e-29 Score=248.88 Aligned_cols=301 Identities=11% Similarity=0.145 Sum_probs=217.7
Q ss_pred cceEEecCCCc-EEEEEecCCCCCCCcEEEEEc----CCCc------EEEEEeecCc-------CCCCCCeeeecCCCcE
Q 013884 2 LLLLTCLRVGL-IIQTFQKSSTPQEKNVILWKT----ETGE------AVYQLFQKNM-------TKTTWPSIRFSSDEAV 63 (434)
Q Consensus 2 V~~l~fSP~g~-~L~t~~~~~~~~d~~v~iWd~----~~g~------~~~~~~~~~~-------~~~~~~~~~~S~d~~~ 63 (434)
|++++|||+|+ +|++++ .|+.|+|||+ .+++ ....+...-. +...+.+++|+||+++
T Consensus 48 v~~~~~s~~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 122 (425)
T 1r5m_A 48 IVSSTWNPLDESILAYGE-----KNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS 122 (425)
T ss_dssp CSEEEECSSCTTEEEEEE-----TBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSE
T ss_pred eEEEEECCCCCcEEEEec-----CCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCE
Confidence 78999999999 999998 8899999999 8888 4555443100 2346779999999999
Q ss_pred EEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc
Q 013884 64 ACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC 142 (434)
Q Consensus 64 la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~ 142 (434)
|+++. ++.|++|+.. .........+...|..+.|+|+ +..+++. +.++.|++|++.. ...+.....+..
T Consensus 123 l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~-----~~d~~i~iwd~~~---~~~~~~~~~~~~ 192 (425)
T 1r5m_A 123 IVTGVENGELRLWNKT-GALLNVLNFHRAPIVSVKWNKD-GTHIISM-----DVENVTILWNVIS---GTVMQHFELKET 192 (425)
T ss_dssp EEEEETTSCEEEEETT-SCEEEEECCCCSCEEEEEECTT-SSEEEEE-----ETTCCEEEEETTT---TEEEEEECCC--
T ss_pred EEEEeCCCeEEEEeCC-CCeeeeccCCCccEEEEEECCC-CCEEEEE-----ecCCeEEEEECCC---CcEEEEeecccc
Confidence 99985 6799999933 2322333445667999999998 4444432 3457899999987 666666665555
Q ss_pred c---------------eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCC
Q 013884 143 S---------------TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSG 207 (434)
Q Consensus 143 ~---------------~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg 207 (434)
. +..+.|++++.. ++. . .|. .++.++............+.++|.+++|+|++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~--~~g---------~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 259 (425)
T 1r5m_A 193 GGSSINAENHSGDGSLGVDVEWVDDDKF-VIP-G--PKG---------AIFVYQITEKTPTGKLIGHHGPISVLEFNDTN 259 (425)
T ss_dssp -------------CCCBSCCEEEETTEE-EEE-C--GGG---------CEEEEETTCSSCSEEECCCSSCEEEEEEETTT
T ss_pred CccceeeccccCCcceeeEEEEcCCCEE-EEE-c--CCC---------eEEEEEcCCCceeeeeccCCCceEEEEECCCC
Confidence 4 778899988652 221 1 222 24444444432222222457899999999999
Q ss_pred CEEEEEEccCCCeEEEEeccc-eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--Cc
Q 013884 208 SEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CS 282 (434)
Q Consensus 208 ~~~av~~g~~~~~i~l~d~~~-~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~ 282 (434)
+.|+ ++..++.+.+||++. ..+..+ +...+.++.|+|+| +|++++ .+|.|++||+.+++.+..+..+ .+
T Consensus 260 ~~l~--~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~i 333 (425)
T 1r5m_A 260 KLLL--SASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCS---MDGSVRLWSLKQNTLLALSIVDGVPI 333 (425)
T ss_dssp TEEE--EEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEE---TTSEEEEEETTTTEEEEEEECTTCCE
T ss_pred CEEE--EEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEe---CCCcEEEEECCCCcEeEecccCCccE
Confidence 9888 467789999999864 334444 67899999999999 888888 5679999999999988888765 56
Q ss_pred eEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC-c--------------------eeeeeec--c--cceeeEEEcCCC
Q 013884 283 VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-S--------------------LFFKKMF--D--KLFQAEWKPVSP 337 (434)
Q Consensus 283 ~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g-~--------------------~~~~~~~--~--~~~~~~w~p~~~ 337 (434)
..++|+|+|++|++++. |+.|+||++.. + ++..... . .+..+.|.|++.
T Consensus 334 ~~~~~s~~~~~l~~~~~------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 407 (425)
T 1r5m_A 334 FAGRISQDGQKYAVAFM------DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGN 407 (425)
T ss_dssp EEEEECTTSSEEEEEET------TSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSS
T ss_pred EEEEEcCCCCEEEEEEC------CCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCc
Confidence 67999999999999999 99999999953 3 3444332 2 789999999987
Q ss_pred CCCCC
Q 013884 338 DKFGD 342 (434)
Q Consensus 338 ~~~~~ 342 (434)
.++..
T Consensus 408 ~l~~~ 412 (425)
T 1r5m_A 408 KISVA 412 (425)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 66554
No 20
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=9.8e-29 Score=235.34 Aligned_cols=276 Identities=16% Similarity=0.206 Sum_probs=201.4
Q ss_pred cceEEecCC-CcEEEEEecCCCCCCCcEEEEEcCCCc-----EEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEE
Q 013884 2 LLLLTCLRV-GLIIQTFQKSSTPQEKNVILWKTETGE-----AVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQF 74 (434)
Q Consensus 2 V~~l~fSP~-g~~L~t~~~~~~~~d~~v~iWd~~~g~-----~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v 74 (434)
|++|+|||+ +++|+|++ .|+.|+|||+.+++ ++..+..+ ...+.++.|+||+++|+++ .++.|++
T Consensus 41 V~~v~~sp~~~~~l~S~s-----~D~~i~vWd~~~~~~~~~~~~~~l~~h---~~~V~~~~~s~dg~~l~s~~~d~~i~~ 112 (340)
T 4aow_A 41 VTQIATTPQFPDMILSAS-----RDKTIIMWKLTRDETNYGIPQRALRGH---SHFVSDVVISSDGQFALSGSWDGTLRL 112 (340)
T ss_dssp EEEEEECTTCTTEEEEEE-----TTSCEEEEEECCSSSCSEEEEEEECCC---SSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EEEEEEeCCCCCEEEEEc-----CCCeEEEEECCCCCcccceeeEEEeCC---CCCEEEEEECCCCCEEEEEcccccceE
Confidence 789999998 68999999 89999999997654 34455443 3678899999999999988 4679999
Q ss_pred EeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013884 75 FDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST 154 (434)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~ 154 (434)
|+................+....++|++ ..++. .+.++.+++|++... .........+...+..+.|++++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s-----~s~d~~~~~~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~ 184 (340)
T 4aow_A 113 WDLTTGTTTRRFVGHTKDVLSVAFSSDN-RQIVS-----GSRDKTIKLWNTLGV--CKYTVQDESHSEWVSCVRFSPNSS 184 (340)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEECTTS-SCEEE-----EETTSCEEEECTTSC--EEEEECSSSCSSCEEEEEECSCSS
T ss_pred EeecccceeeeecCCCCceeEEEEeecC-cccee-----ecCCCeEEEEEeCCC--ceEEEEeccccCcccceEEccCCC
Confidence 9988755433344445567778888884 44443 245678999998652 223333445667778889998876
Q ss_pred eEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEEE
Q 013884 155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILE 233 (434)
Q Consensus 155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~ 233 (434)
..++++ ...|...+ .++............+.++|.+++|+|+++.|+ ++..|+.|.+||++. ..+..
T Consensus 185 ~~~~~s-~~~d~~i~---------i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~--s~s~Dg~i~iwd~~~~~~~~~ 252 (340)
T 4aow_A 185 NPIIVS-CGWDKLVK---------VWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCA--SGGKDGQAMLWDLNEGKHLYT 252 (340)
T ss_dssp SCEEEE-EETTSCEE---------EEETTTTEEEEEECCCSSCEEEEEECTTSSEEE--EEETTCEEEEEETTTTEEEEE
T ss_pred CcEEEE-EcCCCEEE---------EEECCCCceeeEecCCCCcEEEEEECCCCCEEE--EEeCCCeEEEEEeccCceeee
Confidence 544433 22344433 333333322222234578999999999999888 578899999999964 44555
Q ss_pred c-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC---------C--CceEEEECCCCCEEEEEEcCC
Q 013884 234 L-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA---------E--CSVTSEWSPDGRYFMTATTAP 301 (434)
Q Consensus 234 ~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~---------~--~~~~~~wspdg~~l~tas~~~ 301 (434)
+ +...++++.|+|++.+++.+ .++.|+|||++++..+..+.. + .++.++|+|||++|++++.
T Consensus 253 ~~~~~~v~~~~~~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-- 326 (340)
T 4aow_A 253 LDGGDIINALCFSPNRYWLCAA----TGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYT-- 326 (340)
T ss_dssp EECSSCEEEEEECSSSSEEEEE----ETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEET--
T ss_pred ecCCceEEeeecCCCCceeecc----CCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeC--
Confidence 4 56789999999998776544 346999999998877765542 2 5667999999999999999
Q ss_pred ceeeCCcEEEEeec
Q 013884 302 RLQIDNGIKIFHHN 315 (434)
Q Consensus 302 rl~~D~~i~iw~~~ 315 (434)
|+.|+||++.
T Consensus 327 ----Dg~v~iW~~~ 336 (340)
T 4aow_A 327 ----DNLVRVWQVT 336 (340)
T ss_dssp ----TSCEEEEEEE
T ss_pred ----CCEEEEEeCC
Confidence 9999999984
No 21
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.97 E-value=5.8e-29 Score=236.23 Aligned_cols=301 Identities=9% Similarity=0.070 Sum_probs=218.1
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP 81 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~ 81 (434)
|.+++|||||++|++.. .++.+.+|+............ |...+.+++|+||+++|+++.++.|++|++....
T Consensus 12 v~~~~~s~dg~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~ 83 (337)
T 1gxr_A 12 AYSFHVTADGQMQPVPF-----PPDALIGPGIPRHARQINTLN---HGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPG 83 (337)
T ss_dssp CCEEEECSSSCEEECCC-----CTTSSSSTTCCSEEEEEEEEC---CSSCCCEEEECSSSSEEEEECBSEEEEEETTSTT
T ss_pred eeEEEECCCCCEEEeec-----CCCcEeccccCCccccceecc---CCCceEEEEEecCCcEEEEcCCCeEEEEECCCCC
Confidence 67899999999999766 344555555444333333223 3367889999999999999998999999997654
Q ss_pred Ccee-ee----eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCC--ceeeeeecccceeEEEECCCCC
Q 013884 82 KGIL-YR----LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQ--PLARRSFFRCSTVQLNWNRGST 154 (434)
Q Consensus 82 ~~~~-~~----~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~--~i~~~~~~~~~~~~~~ws~~G~ 154 (434)
.... .. .+...|..++|+|+ +..+++- +.++.|++|++.. .. .......+...+..+.|+|+|+
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~-----~~d~~i~~~d~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~ 154 (337)
T 1gxr_A 84 NKSPVSQLDCLNRDNYIRSCKLLPD-GCTLIVG-----GEASTLSIWDLAA---PTPRIKAELTSSAPACYALAISPDSK 154 (337)
T ss_dssp CCSCSEEEECSCTTSBEEEEEECTT-SSEEEEE-----ESSSEEEEEECCC---C--EEEEEEECSSSCEEEEEECTTSS
T ss_pred ceeeeecccccCCCCcEEEEEEcCC-CCEEEEE-----cCCCcEEEEECCC---CCcceeeecccCCCceEEEEECCCCC
Confidence 2211 11 23457999999998 4555432 3457999999987 44 4455566777888999999999
Q ss_pred eEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEEE
Q 013884 155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILE 233 (434)
Q Consensus 155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~ 233 (434)
.+++.. .|.. ++.++............+.+.|.+++|+|+++.|+ ++..++.+.+||++. ..+..
T Consensus 155 ~l~~~~---~dg~---------v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~--~~~~dg~i~~~d~~~~~~~~~ 220 (337)
T 1gxr_A 155 VCFSCC---SDGN---------IAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW--TGGLDNTVRSWDLREGRQLQQ 220 (337)
T ss_dssp EEEEEE---TTSC---------EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE--EEETTSEEEEEETTTTEEEEE
T ss_pred EEEEEe---CCCc---------EEEEeCCCCceeeeeecccCceEEEEECCCCCEEE--EEecCCcEEEEECCCCceEee
Confidence 876542 2222 34444433322222223578999999999999888 466789999999964 44444
Q ss_pred c-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013884 234 L-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKI 311 (434)
Q Consensus 234 ~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~i 311 (434)
+ +...+.+++|+|+|++|++++ .+|.|++||+.+.+......+. .+..++|+|||++|++++. |+.|++
T Consensus 221 ~~~~~~v~~~~~s~~~~~l~~~~---~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~~ 291 (337)
T 1gxr_A 221 HDFTSQIFSLGYCPTGEWLAVGM---ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGK------DNLLNA 291 (337)
T ss_dssp EECSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEET------TSEEEE
T ss_pred ecCCCceEEEEECCCCCEEEEEc---CCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecC------CCcEEE
Confidence 4 578899999999999999998 5579999999988765443333 5667999999999999999 999999
Q ss_pred Eeec-Cceeeee-ecccceeeEEEcCCCCCCCC
Q 013884 312 FHHN-GSLFFKK-MFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 312 w~~~-g~~~~~~-~~~~~~~~~w~p~~~~~~~~ 342 (434)
|++. ++.+... +...+..+.|.|++..++..
T Consensus 292 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 324 (337)
T 1gxr_A 292 WRTPYGASIFQSKESSSVLSCDISVDDKYIVTG 324 (337)
T ss_dssp EETTTCCEEEEEECSSCEEEEEECTTSCEEEEE
T ss_pred EECCCCeEEEEecCCCcEEEEEECCCCCEEEEe
Confidence 9985 4444333 44679999999998766654
No 22
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2e-29 Score=247.08 Aligned_cols=272 Identities=15% Similarity=0.156 Sum_probs=209.1
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|++++|||+|++|++++ .|+.|+||| .+++.+..+..+. ..+.+++|+|++++|+++. ++.|++|++...
T Consensus 111 v~~~~~s~~~~~l~~~~-----~dg~i~i~~-~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 181 (425)
T 1r5m_A 111 VTCLAWSHDGNSIVTGV-----ENGELRLWN-KTGALLNVLNFHR---APIVSVKWNKDGTHIISMDVENVTILWNVISG 181 (425)
T ss_dssp EEEEEECTTSSEEEEEE-----TTSCEEEEE-TTSCEEEEECCCC---SCEEEEEECTTSSEEEEEETTCCEEEEETTTT
T ss_pred eEEEEEcCCCCEEEEEe-----CCCeEEEEe-CCCCeeeeccCCC---ccEEEEEECCCCCEEEEEecCCeEEEEECCCC
Confidence 78999999999999998 789999999 7788888876543 6677999999999998884 689999999775
Q ss_pred CCceeeeeecCC---------------eeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013884 81 PKGILYRLRVPG---------------VAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV 145 (434)
Q Consensus 81 ~~~~~~~~~~~~---------------v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~ 145 (434)
........+... +..+.|+|+ +. +++ .+..+.|++|++.. ...+.....+...+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~-----~~~~g~i~~~d~~~---~~~~~~~~~~~~~i~ 251 (425)
T 1r5m_A 182 TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-DK-FVI-----PGPKGAIFVYQITE---KTPTGKLIGHHGPIS 251 (425)
T ss_dssp EEEEEECCC---------------CCCBSCCEEEET-TE-EEE-----ECGGGCEEEEETTC---SSCSEEECCCSSCEE
T ss_pred cEEEEeeccccCccceeeccccCCcceeeEEEEcCC-CE-EEE-----EcCCCeEEEEEcCC---CceeeeeccCCCceE
Confidence 432222233233 788889887 33 322 24567899999988 677777777888899
Q ss_pred EEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEe
Q 013884 146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFN 225 (434)
Q Consensus 146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d 225 (434)
.+.|+|+|+.|++.. .|.. ++.++............+...|.+++|+|++ .++ ++..++.+.+||
T Consensus 252 ~~~~~~~~~~l~~~~---~d~~---------i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~--~~~~d~~i~i~d 316 (425)
T 1r5m_A 252 VLEFNDTNKLLLSAS---DDGT---------LRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVI--SCSMDGSVRLWS 316 (425)
T ss_dssp EEEEETTTTEEEEEE---TTSC---------EEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEE--EEETTSEEEEEE
T ss_pred EEEECCCCCEEEEEc---CCCE---------EEEEECCCCccceEecCCCccEEEEEECCCC-EEE--EEeCCCcEEEEE
Confidence 999999999765532 2333 3333333322122222357899999999999 555 577789999999
Q ss_pred ccc-eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE--------------------EEEEeeCC--
Q 013884 226 KKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK--------------------QLGTTRAE-- 280 (434)
Q Consensus 226 ~~~-~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~--------------------~i~~~~~~-- 280 (434)
++. ..+..+ +...+.+++|+|+|++|++++ .+|.|.+||+.+++ .+..+..+
T Consensus 317 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (425)
T 1r5m_A 317 LKQNTLLALSIVDGVPIFAGRISQDGQKYAVAF---MDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQD 393 (425)
T ss_dssp TTTTEEEEEEECTTCCEEEEEECTTSSEEEEEE---TTSCEEEEECHHHHC--------------CEECCEEEEECCTTC
T ss_pred CCCCcEeEecccCCccEEEEEEcCCCCEEEEEE---CCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCccc
Confidence 963 444443 678999999999999999998 55799999999877 78888877
Q ss_pred --CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884 281 --CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 281 --~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
.+..++|+|||++|++++. |+.|+||++.|
T Consensus 394 ~~~v~~~~~s~~~~~l~~~~~------dg~i~iw~~~g 425 (425)
T 1r5m_A 394 NDYIFDLSWNCAGNKISVAYS------LQEGSVVAIPG 425 (425)
T ss_dssp CCCEEEEEECTTSSEEEEEES------SSCCEEEECCC
T ss_pred CCceEEEEccCCCceEEEEec------CceEEEEeecC
Confidence 5667999999999999999 99999999876
No 23
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=5.3e-29 Score=241.41 Aligned_cols=282 Identities=11% Similarity=0.057 Sum_probs=191.0
Q ss_pred cceEEecCCCcEEEEEecCCC--CCCCcEEEEEcCCCcE--------EEEEeecCcCCCCCCeeeecCCCcEEEEec---
Q 013884 2 LLLLTCLRVGLIIQTFQKSST--PQEKNVILWKTETGEA--------VYQLFQKNMTKTTWPSIRFSSDEAVACRMA--- 68 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~--~~d~~v~iWd~~~g~~--------~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--- 68 (434)
|++++|||||++|++++.... .-++.|+||++..+.. ...+.... +...+.++ ++++..++.+.
T Consensus 17 V~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~-~~~~v~s~--~~~~~~~~~g~~~~ 93 (365)
T 4h5i_A 17 AYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALED-NDDSPTAI--DASKGIILVGCNEN 93 (365)
T ss_dssp EEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCT-TSCCCCEE--EEETTEEEEECCCC
T ss_pred EEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccC-CCCceEEE--EeCCCEEEEEECCC
Confidence 789999999999999873211 1245699999875531 22222221 22444454 55666666542
Q ss_pred ---------CCeEEEEeCCCCCCcee--eeee-------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013884 69 ---------TNEIQFFDTTDFPKGIL--YRLR-------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130 (434)
Q Consensus 69 ---------~~~i~v~~~~~~~~~~~--~~~~-------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~ 130 (434)
++.|++|++........ .... ...++.++|||++ .++++. +++.++.|+||++.+
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg-~~la~a---s~~~d~~i~iwd~~~--- 166 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG-TVAAIA---SSKVPAIMRIIDPSD--- 166 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS-SCEEEE---ESCSSCEEEEEETTT---
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC-CEEEEE---ECCCCCEEEEeECCC---
Confidence 45799999765432111 1111 1237789999994 544432 245678999999988
Q ss_pred CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCcee-e-eecCCCCCeEEEEECcCCC
Q 013884 131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG-L-VPLRKEGPVHDVQWSYSGS 208 (434)
Q Consensus 131 ~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~-~-v~l~~~~~i~~~~wspdg~ 208 (434)
...+.... +...+..+.|+|+|+.|+... +.. +..+........ . ....+...|.+++|+|+|+
T Consensus 167 ~~~~~~~~-~~~~V~~v~fspdg~~l~s~s----~~~---------~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~ 232 (365)
T 4h5i_A 167 LTEKFEIE-TRGEVKDLHFSTDGKVVAYIT----GSS---------LEVISTVTGSCIARKTDFDKNWSLSKINFIADDT 232 (365)
T ss_dssp TEEEEEEE-CSSCCCEEEECTTSSEEEEEC----SSC---------EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTE
T ss_pred CcEEEEeC-CCCceEEEEEccCCceEEecc----cee---------EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCC
Confidence 66666654 667889999999999876541 212 222322222111 1 1223467899999999999
Q ss_pred EEEEEEccCCC--eEEEEecccee-----EEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe-e
Q 013884 209 EFAVVYGFMPA--SATIFNKKCRP-----ILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT-R 278 (434)
Q Consensus 209 ~~av~~g~~~~--~i~l~d~~~~~-----~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~-~ 278 (434)
.++..+..... .+.+||+.... ...+ +...+++++|||||++||+|+ .+|.|+|||+++++++..+ .
T Consensus 233 ~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs---~D~~V~iwd~~~~~~~~~~~~ 309 (365)
T 4h5i_A 233 VLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS---NDNSIALVKLKDLSMSKIFKQ 309 (365)
T ss_dssp EEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE---TTSCEEEEETTTTEEEEEETT
T ss_pred EEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc---CCCEEEEEECCCCcEEEEecC
Confidence 99865433222 56778774321 2222 678899999999999999999 5579999999999998875 5
Q ss_pred CC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884 279 AE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 279 ~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
+| .++.++|||||++|++++. |++||||++..
T Consensus 310 gH~~~V~~v~fSpdg~~laS~S~------D~tvrvw~ip~ 343 (365)
T 4h5i_A 310 AHSFAITEVTISPDSTYVASVSA------ANTIHIIKLPL 343 (365)
T ss_dssp SSSSCEEEEEECTTSCEEEEEET------TSEEEEEECCT
T ss_pred cccCCEEEEEECCCCCEEEEEeC------CCeEEEEEcCC
Confidence 55 5677999999999999999 99999999843
No 24
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.5e-30 Score=253.62 Aligned_cols=284 Identities=13% Similarity=0.217 Sum_probs=203.6
Q ss_pred cceEEecCCCc-EEEEEecCC-----CCCCCcEEEEEcCCCc---EEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCe
Q 013884 2 LLLLTCLRVGL-IIQTFQKSS-----TPQEKNVILWKTETGE---AVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNE 71 (434)
Q Consensus 2 V~~l~fSP~g~-~L~t~~~~~-----~~~d~~v~iWd~~~g~---~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~ 71 (434)
|.+++|||+|+ +|+++.... ...|+.|+|||+.+++ .+..+. +...+.+++|+||+++|+++. ++.
T Consensus 15 v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 15 TATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQ----VDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp SCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCC----CSSCEEEEEECSSSSCEEEEESSSC
T ss_pred cceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEe----cCCceEEEEECCCCCeEEEEccCCe
Confidence 67899999998 888873211 0378999999999885 333332 236677999999999999984 679
Q ss_pred EEEEeCCCC----CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC------CCCceeeeeecc
Q 013884 72 IQFFDTTDF----PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL------QSQPLARRSFFR 141 (434)
Q Consensus 72 i~v~~~~~~----~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~------~~~~i~~~~~~~ 141 (434)
|++|++... ........+...|..++|+|+++..++. .+.++.|++|++.... ....+.....+.
T Consensus 91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s-----~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 165 (416)
T 2pm9_A 91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLAS-----GGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSV 165 (416)
T ss_dssp EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEE-----ECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSS
T ss_pred EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEE-----EcCCCeEEEEECCCCccccccccccccccccCCC
Confidence 999999772 1222233455679999999985555553 3456789999998732 011122234567
Q ss_pred cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCC-------CCCeEEEEECcCCC-EEEEE
Q 013884 142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK-------EGPVHDVQWSYSGS-EFAVV 213 (434)
Q Consensus 142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~-------~~~i~~~~wspdg~-~~av~ 213 (434)
..+..+.|+|++..+++.++ .|... ..+++... .....+.. ...|.+++|+|++. .++
T Consensus 166 ~~v~~~~~~~~~~~~l~~~~--~dg~v---------~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-- 231 (416)
T 2pm9_A 166 DEVISLAWNQSLAHVFASAG--SSNFA---------SIWDLKAK-KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA-- 231 (416)
T ss_dssp CCCCEEEECSSCTTEEEEES--SSSCE---------EEEETTTT-EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEE--
T ss_pred CCeeEEEeCCCCCcEEEEEc--CCCCE---------EEEECCCC-CcceEEeccccccccCCceEEEEECCCCCCEEE--
Confidence 78899999999554444332 23333 33333332 22222221 67899999999985 555
Q ss_pred EccCCC---eEEEEeccc--eeEEE---cCCcCeeEEEECC-CCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--Cc
Q 013884 214 YGFMPA---SATIFNKKC--RPILE---LGSGPYNTVRWNP-KGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CS 282 (434)
Q Consensus 214 ~g~~~~---~i~l~d~~~--~~~~~---~~~~~~~~i~~sP-~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~ 282 (434)
++..++ .|++||++. ..+.. .|...+++++|+| ++++|++++ .+|.|++||+.+++.+..+..| .+
T Consensus 232 ~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~---~dg~v~~wd~~~~~~~~~~~~~~~~v 308 (416)
T 2pm9_A 232 TATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSG---RDNTVLLWNPESAEQLSQFPARGNWC 308 (416)
T ss_dssp EEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEE---SSSEEEEECSSSCCEEEEEECSSSCC
T ss_pred EEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEe---CCCCEEEeeCCCCccceeecCCCCce
Confidence 456677 999999974 33333 3678899999999 999999998 5679999999999998888776 56
Q ss_pred eEEEECCCC-CEEEEEEcCCceeeCCcEEEEeecCc
Q 013884 283 VTSEWSPDG-RYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 283 ~~~~wspdg-~~l~tas~~~rl~~D~~i~iw~~~g~ 317 (434)
..++|+||| ++|++++. |+.|+||++...
T Consensus 309 ~~~~~s~~~~~~l~s~~~------d~~i~iw~~~~~ 338 (416)
T 2pm9_A 309 FKTKFAPEAPDLFACASF------DNKIEVQTLQNL 338 (416)
T ss_dssp CCEEECTTCTTEEEECCS------SSEEEEEESCCC
T ss_pred EEEEECCCCCCEEEEEec------CCcEEEEEccCC
Confidence 679999999 89999998 999999999553
No 25
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=2.8e-28 Score=240.57 Aligned_cols=280 Identities=14% Similarity=0.157 Sum_probs=209.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
+.+|+||++ ++|+++. |++|+|||+.+|+++..+..+. |...|.+++|+|||++||+++ |++|+|||+...
T Consensus 108 ~~~l~wS~~-n~lAvgl------d~tV~lWd~~tg~~~~~~~~~~-~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~ 179 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL------DNSVYLWSASSGDILQLLQMEQ-PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ 179 (420)
T ss_dssp CBCEEECTT-SEEEEEE------TTEEEEEETTTCCEEEEEECCS-TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred ceeEEECCC-CEEEEEe------CCEEEEEECCCCCEEEEEEecC-CCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC
Confidence 357999985 5777654 8999999999999888776543 346678999999999999985 679999999886
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
........|...+..+++++ ..++. ++.++.+.+|+.... ...+.....+...++.+.|+++|..++...
T Consensus 180 ~~~~~~~~h~~~v~~~s~~~---~~l~s-----gs~d~~i~~~d~~~~--~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~ 249 (420)
T 4gga_A 180 KRLRNMTSHSARVGSLSWNS---YILSS-----GSRSGHIHHHDVRVA--EHHVATLSGHSQEVCGLRWAPDGRHLASGG 249 (420)
T ss_dssp EEEEEECCCSSCEEEEEEET---TEEEE-----EETTSEEEEEETTSS--SCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred cEEEEEeCCCCceEEEeeCC---CEEEE-----EeCCCceeEeeeccc--ceeeEEecccccceeeeeecCCCCeeeeee
Confidence 54444445556677777654 34442 345678999998763 456677788889999999999999865532
Q ss_pred EecccccCceeecceeEEEEeeCCCc--eeeeecCCCCCeEEEEECcCCCE-EEEEEccCCCeEEEEeccc-eeEEEc-C
Q 013884 161 QSDVDKTNQSYYGESKLNYLTTDGTH--EGLVPLRKEGPVHDVQWSYSGSE-FAVVYGFMPASATIFNKKC-RPILEL-G 235 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l~~~~~i~~~~wspdg~~-~av~~g~~~~~i~l~d~~~-~~~~~~-~ 235 (434)
.|..... +.+...... .......+.+.|.+++|+|++.. +++..|..|+.|++||++. ..+..+ .
T Consensus 250 ---~D~~v~i-------~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~ 319 (420)
T 4gga_A 250 ---NDNLVNV-------WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA 319 (420)
T ss_dssp ---TTSCEEE-------EESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC
T ss_pred ---ccccceE-------EeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc
Confidence 3443332 222111110 11122345789999999997664 4555677899999999964 444444 5
Q ss_pred CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884 236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 236 ~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~ 313 (434)
...+.++.|+|+++.+++++. ..+|.|+|||+.+++++..+.+| .+..++|||||++|+|++. |++|+|||
T Consensus 320 ~~~v~~~~~~~~~~~lv~~sg-~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~------D~tvriWd 392 (420)
T 4gga_A 320 HSQVCSILWSPHYKELISGHG-FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA------DETLRLWR 392 (420)
T ss_dssp SSCEEEEEEETTTTEEEEEEC-TTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET------TTEEEEEC
T ss_pred ccceeeeeecCCCCeEEEEEe-cCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec------CCeEEEEE
Confidence 678899999999999887752 24689999999999999999887 5677999999999999999 99999999
Q ss_pred ecC
Q 013884 314 HNG 316 (434)
Q Consensus 314 ~~g 316 (434)
+..
T Consensus 393 v~~ 395 (420)
T 4gga_A 393 CFE 395 (420)
T ss_dssp CSC
T ss_pred CCC
Confidence 754
No 26
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.97 E-value=1.2e-28 Score=236.65 Aligned_cols=272 Identities=12% Similarity=0.147 Sum_probs=196.7
Q ss_pred cceEEe-----cC-CCcEEEEEecCCCCCCCcEEEEEcCCC-------cEEEEEeecCcCCCCCCeeeecCCCcEEEEec
Q 013884 2 LLLLTC-----LR-VGLIIQTFQKSSTPQEKNVILWKTETG-------EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA 68 (434)
Q Consensus 2 V~~l~f-----SP-~g~~L~t~~~~~~~~d~~v~iWd~~~g-------~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~ 68 (434)
|++|+| +| +|++|+|++ .|++|+|||+.++ ..+..+..+ ...+.+++|+||+.++++++
T Consensus 24 V~~~~~~~s~~~~~d~~~l~sgs-----~D~~v~iWd~~~~~~~~~~~~~~~~l~~h---~~~V~~~~~~~~~~~l~s~s 95 (343)
T 2xzm_R 24 VTSIVAGFSQKENEDSPVLISGS-----RDKTVMIWKLYEEEQNGYFGIPHKALTGH---NHFVSDLALSQENCFAISSS 95 (343)
T ss_dssp EEEEEECCCSSTTCCCCEEEEEE-----TTSCEEEEEECSSCCSSBSEEEEEEECCC---SSCEEEEEECSSTTEEEEEE
T ss_pred hhheeeEEEeecCCCCCEEEEEc-----CCCEEEEEECCcCCcccccccccchhccC---CCceEEEEECCCCCEEEEEc
Confidence 789999 77 999999999 8999999999754 344555443 36777999999999999885
Q ss_pred -CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee--eeeccccee
Q 013884 69 -TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR--RSFFRCSTV 145 (434)
Q Consensus 69 -~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~--~~~~~~~~~ 145 (434)
|++|++||+...........|...|.+++|+|++ ..++. .+.++.|++|++.. ...... ...+...+.
T Consensus 96 ~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s-----~~~d~~i~~wd~~~---~~~~~~~~~~~~~~~v~ 166 (343)
T 2xzm_R 96 WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN-RQILS-----AGAEREIKLWNILG---ECKFSSAEKENHSDWVS 166 (343)
T ss_dssp TTSEEEEEETTSSCEEEEEECCCSCEEEEEECSST-TEEEE-----EETTSCEEEEESSS---CEEEECCTTTSCSSCEE
T ss_pred CCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCC-CEEEE-----EcCCCEEEEEeccC---CceeeeecccCCCceee
Confidence 6799999998765444445567789999999984 45543 34568999999864 221111 124566788
Q ss_pred EEEECCCC----------CeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEc
Q 013884 146 QLNWNRGS----------TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYG 215 (434)
Q Consensus 146 ~~~ws~~G----------~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g 215 (434)
++.|+|++ ..++. ...|...+.| +..+. .......+.++|.+++|+|+|++|+ +|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~l~s---~~~d~~i~iw---------d~~~~-~~~~~~~h~~~v~~~~~s~~g~~l~--sg 231 (343)
T 2xzm_R 167 CVRYSPIMKSANKVQPFAPYFAS---VGWDGRLKVW---------NTNFQ-IRYTFKAHESNVNHLSISPNGKYIA--TG 231 (343)
T ss_dssp EEEECCCCCSCSCCCSSCCEEEE---EETTSEEEEE---------ETTTE-EEEEEECCSSCEEEEEECTTSSEEE--EE
T ss_pred eeeeccccccccccCCCCCEEEE---EcCCCEEEEE---------cCCCc-eeEEEcCccccceEEEECCCCCEEE--EE
Confidence 99999987 33322 2244444433 22121 1111223578999999999999988 67
Q ss_pred cCCCeEEEEecc--ceeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEE--Eee-----------C
Q 013884 216 FMPASATIFNKK--CRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG--TTR-----------A 279 (434)
Q Consensus 216 ~~~~~i~l~d~~--~~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~--~~~-----------~ 279 (434)
..|+.|++||+. ......+ +...+++++|+|++++++++. ++.|++||+.+++.+. .+. +
T Consensus 232 s~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~----d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (343)
T 2xzm_R 232 GKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGT----DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKG 307 (343)
T ss_dssp ETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEE----SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCC
T ss_pred cCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEEC----CCCEEEEEeCCCCCCceEEeecCcchhhhhhcC
Confidence 889999999983 2233334 566799999999999887553 3479999998764322 332 2
Q ss_pred C--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884 280 E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 280 ~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~ 315 (434)
+ .+..++|+|+|++|++++. |+.|+||++.
T Consensus 308 ~~~~v~~~~~sp~g~~l~sg~~------Dg~v~~w~~~ 339 (343)
T 2xzm_R 308 KNPQCTSLAWNALGKKLFAGFT------DGVIRTFSFE 339 (343)
T ss_dssp SCCCEEEEEECSSSCCEEEEET------TSEEEEEEEE
T ss_pred CCCceEEEEECCCCCeEEEecC------CceEEEEEEE
Confidence 2 4567999999999999999 9999999984
No 27
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.8e-28 Score=232.86 Aligned_cols=278 Identities=13% Similarity=0.146 Sum_probs=192.3
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc--EEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~ 78 (434)
|++++|||+ +|+|++ .|+.|+|||+.++. .+..+.. ..|...+.+++|+|++++|++++ |++|+||+..
T Consensus 17 v~~~~~s~~--~las~~-----~D~~i~lw~~~~~~~~~~~~~~~-~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~ 88 (330)
T 2hes_X 17 IWSFDFSQG--ILATGS-----TDRKIKLVSVKYDDFTLIDVLDE-TAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKE 88 (330)
T ss_dssp EEEEEEETT--EEEEEE-----SSSCEEEEECSSSCCEEEEEECT-TCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-
T ss_pred eeeeccCCC--EEEEEc-----CCCEEEEEEecCCCeEEEEEEec-CCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcc
Confidence 789999998 999999 89999999998763 3444421 11446788999999999999985 6799999985
Q ss_pred CCC-------CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-CCCceeeeeecccceeEEEEC
Q 013884 79 DFP-------KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL-QSQPLARRSFFRCSTVQLNWN 150 (434)
Q Consensus 79 ~~~-------~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-~~~~i~~~~~~~~~~~~~~ws 150 (434)
... .......|...|.+++|+|+ +.+++. .+.++.|++|++.... ....+.....|...+..+.|+
T Consensus 89 ~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-g~~las-----~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~ 162 (330)
T 2hes_X 89 ESADRTFEMDLLAIIEGHENEVKGVAWSND-GYYLAT-----CSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162 (330)
T ss_dssp ------CCCEEEEEEC----CEEEEEECTT-SCEEEE-----EETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred cCcCccccceeEEEEcCCCCcEEEEEECCC-CCEEEE-----EeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence 321 11223345667999999998 455553 3556799999995321 123455666788889999999
Q ss_pred CCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcC--CCEEEEEEccCCCeEEEEecc
Q 013884 151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYS--GSEFAVVYGFMPASATIFNKK 227 (434)
Q Consensus 151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspd--g~~~av~~g~~~~~i~l~d~~ 227 (434)
|+|..|+. ...|.+.+.|. +.. +...+...+ .+.+.|.+++|+|+ +..++ ++..|+.|++||++
T Consensus 163 p~~~~l~s---~s~D~~i~iW~-------~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~--s~s~D~~v~iw~~~ 229 (330)
T 2hes_X 163 PSEALLAS---SSYDDTVRIWK-------DYD-DDWECVAVLNGHEGTVWSSDFDKTEGVFRLC--SGSDDSTVRVWKYM 229 (330)
T ss_dssp SSSSEEEE---EETTSCEEEEE-------EET-TEEEEEEEECCCSSCEEEEEECCSSSSCEEE--EEETTSCEEEEEEE
T ss_pred CCCCEEEE---EcCCCeEEEEE-------CCC-CCeeEEEEccCCCCcEEEEEecCCCCeeEEE--EEeCCCeEEEEEec
Confidence 99997544 33566655442 211 111222222 35789999999999 55555 68889999999985
Q ss_pred ce---------eEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE--EEEEe-eCC---CceEEEECC
Q 013884 228 CR---------PILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK--QLGTT-RAE---CSVTSEWSP 289 (434)
Q Consensus 228 ~~---------~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~--~i~~~-~~~---~~~~~~wsp 289 (434)
.. ....+ |...+.+++|+|++ +|++++ .+|.|+|||..+++ .+... .+| .+..++|+|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~---~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~ 305 (330)
T 2hes_X 230 GDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVG---ADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLE 305 (330)
T ss_dssp EECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEE---TTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-
T ss_pred CCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEe---CCCEEEEEEcCCCceEEEeccccccccceEEEEEEec
Confidence 42 22222 67889999999776 788888 56799999998874 33332 334 456699999
Q ss_pred --CCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884 290 --DGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 290 --dg~~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
|+++|++++. |+.|+||++..
T Consensus 306 ~~~~~~las~s~------Dg~v~~W~~~~ 328 (330)
T 2hes_X 306 LNGKTILATGGD------DGIVNFWSLEK 328 (330)
T ss_dssp ----CCEEEEET------TSEEEEEEC--
T ss_pred CCCceEEEEecC------CCcEEEEEecc
Confidence 7999999999 99999999754
No 28
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-29 Score=248.45 Aligned_cols=279 Identities=12% Similarity=0.164 Sum_probs=205.1
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC----CcEEEEEeecCcCCCCCCeeeecCC-CcEEEEec-CCeEEEE
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET----GEAVYQLFQKNMTKTTWPSIRFSSD-EAVACRMA-TNEIQFF 75 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~----g~~~~~~~~~~~~~~~~~~~~~S~d-~~~la~~~-~~~i~v~ 75 (434)
|.+++|||+|++|++++ .|+.|+|||+.+ .+.+..+..+ ...+.+++|+|+ +.+|+++. ++.|++|
T Consensus 70 v~~~~~s~~~~~l~~~~-----~dg~v~vw~~~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 141 (416)
T 2pm9_A 70 FNDLDWSHNNKIIAGAL-----DNGSLELYSTNEANNAINSMARFSNH---SSSVKTVKFNAKQDNVLASGGNNGEIFIW 141 (416)
T ss_dssp EEEEEECSSSSCEEEEE-----SSSCEEEECCSSTTSCCCEEEECCCS---SSCCCEEEECSSSTTBEEEECSSSCEEBC
T ss_pred eEEEEECCCCCeEEEEc-----cCCeEEEeecccccccccchhhccCC---ccceEEEEEcCCCCCEEEEEcCCCeEEEE
Confidence 68999999999999998 789999999987 3466666554 367779999998 88888885 6799999
Q ss_pred eCCCCC------Ccee---eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec------
Q 013884 76 DTTDFP------KGIL---YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF------ 140 (434)
Q Consensus 76 ~~~~~~------~~~~---~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~------ 140 (434)
|+.... .... ...+...|.+++|+|+++..+++ .+.++.|++|++.. .+.+.....+
T Consensus 142 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-----~~~dg~v~iwd~~~---~~~~~~~~~~~~~~~~ 213 (416)
T 2pm9_A 142 DMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFAS-----AGSSNFASIWDLKA---KKEVIHLSYTSPNSGI 213 (416)
T ss_dssp BTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEE-----ESSSSCEEEEETTT---TEEEEEECCCCCSSCC
T ss_pred ECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEE-----EcCCCCEEEEECCC---CCcceEEecccccccc
Confidence 998754 2111 12345679999999985566653 34567899999987 6677666665
Q ss_pred ccceeEEEECCCCCeEEEEEEecc-cccCceeecceeEEEEeeCCCceeeeec--CCCCCeEEEEECc-CCCEEEEEEcc
Q 013884 141 RCSTVQLNWNRGSTGLLAVAQSDV-DKTNQSYYGESKLNYLTTDGTHEGLVPL--RKEGPVHDVQWSY-SGSEFAVVYGF 216 (434)
Q Consensus 141 ~~~~~~~~ws~~G~~l~~~~~~~~-d~~~~~~~g~~~l~~l~~~~~~~~~v~l--~~~~~i~~~~wsp-dg~~~av~~g~ 216 (434)
...+..+.|+|+|..+++.++.+. +...+ +| ++.........+ .+...|.+++|+| +++.|+ ++.
T Consensus 214 ~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~-------~~--d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~--s~~ 282 (416)
T 2pm9_A 214 KQQLSVVEWHPKNSTRVATATGSDNDPSIL-------IW--DLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLL--SSG 282 (416)
T ss_dssp CCCEEEEEECSSCTTEEEEEECCSSSCCCC-------EE--ETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEE--EEE
T ss_pred CCceEEEEECCCCCCEEEEEECCCCCceEE-------EE--eCCCCCCCcEEeecCccCceeEEEeCCCCCCeEE--EEe
Confidence 677899999999865555443221 00332 33 332221222223 3578999999999 888888 577
Q ss_pred CCCeEEEEecc-ceeEEEc--CCcCeeEEEECCCC-CeEEEEecCCCCCeEEEEEccCCEEEEEe---------------
Q 013884 217 MPASATIFNKK-CRPILEL--GSGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDYVDGKQLGTT--------------- 277 (434)
Q Consensus 217 ~~~~i~l~d~~-~~~~~~~--~~~~~~~i~~sP~g-~~l~~~~~~~~~g~i~iwd~~~~~~i~~~--------------- 277 (434)
.++.|++||++ ...+..+ |...+++++|+|+| ++|++++ .+|.|+|||+.+.+.....
T Consensus 283 ~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~---~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (416)
T 2pm9_A 283 RDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACAS---FDNKIEVQTLQNLTNTLDEQETETKQQESETDFW 359 (416)
T ss_dssp SSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECC---SSSEEEEEESCCCCCSSCC---------------
T ss_pred CCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEe---cCCcEEEEEccCCCCCcccccccccccCCccccc
Confidence 79999999986 3444444 68899999999999 7888888 5579999999865421111
Q ss_pred ----------------------eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884 278 ----------------------RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 278 ----------------------~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
....+..++|||||++|++++. |+.|+||++..
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~------d~~v~~w~~~~ 414 (416)
T 2pm9_A 360 NNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPD------GKGVSITNPKI 414 (416)
T ss_dssp -------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTT------SSCBCCBCCCC
T ss_pred ccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCC------CCeEEEEEecc
Confidence 0112336899999999999998 99999999864
No 29
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=1.9e-27 Score=224.17 Aligned_cols=278 Identities=14% Similarity=0.150 Sum_probs=204.8
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCC
Q 013884 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFP 81 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~ 81 (434)
.+|+|||++ +|+++ .|++|+|||+.+|++++.+..+. |...+.+++|+|++++|++++ |++|++|++....
T Consensus 29 ~~l~WS~~~-~lAvg------~D~tV~iWd~~tg~~~~~~~~~~-~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~ 100 (318)
T 4ggc_A 29 NLVDWSSGN-VLAVA------LDNSVYLWSASSGDILQLLQMEQ-PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK 100 (318)
T ss_dssp BCEEECTTS-EEEEE------ETTEEEEEETTTCCEEEEEECCS-TTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred eEEEECCCC-EEEEE------eCCEEEEEECCCCCEEEEEEecC-CCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce
Confidence 679999986 67664 38999999999999988876543 446677999999999999985 6799999998865
Q ss_pred CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013884 82 KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ 161 (434)
Q Consensus 82 ~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~ 161 (434)
.......+...+..+.+.+ ..++. .+..+.+.+|..... ...+.....+......+.|+++|+.++..
T Consensus 101 ~~~~~~~h~~~~~~~~~~~---~~l~s-----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-- 168 (318)
T 4ggc_A 101 RLRNMTSHSARVGSLSWNS---YILSS-----GSRSGHIHHHDVRVA--EHHVATLSGHSQEVCGLRWAPDGRHLASG-- 168 (318)
T ss_dssp EEEEEECCSSCEEEEEEET---TEEEE-----EETTSEEEEEETTSS--SCEEEEEECCSSCEEEEEECTTSSEEEEE--
T ss_pred eEEEecCccceEEEeecCC---CEEEE-----EecCCceEeeecCCC--ceeEEEEcCccCceEEEEEcCCCCEEEEE--
Confidence 4333444444555544433 33432 244567888888663 45666777788889999999999986543
Q ss_pred ecccccCceeecceeEEEEeeCCCc--eeeeecCCCCCeEEEEECcCCCEE-EEEEccCCCeEEEEeccceeEE--EcCC
Q 013884 162 SDVDKTNQSYYGESKLNYLTTDGTH--EGLVPLRKEGPVHDVQWSYSGSEF-AVVYGFMPASATIFNKKCRPIL--ELGS 236 (434)
Q Consensus 162 ~~~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l~~~~~i~~~~wspdg~~~-av~~g~~~~~i~l~d~~~~~~~--~~~~ 236 (434)
..|.+.+. |.+...... .........+.|..++|+|++..+ .+.++..++.+++||.+..... ..+.
T Consensus 169 -~~d~~i~i-------wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~ 240 (318)
T 4ggc_A 169 -GNDNLVNV-------WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 240 (318)
T ss_dssp -ETTSCEEE-------EESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECS
T ss_pred -ecCcceeE-------EECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccce
Confidence 24544443 332211110 111223347889999999987654 4556788899999998754433 2367
Q ss_pred cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884 237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 237 ~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~ 314 (434)
..+..+.|+|+++.+++++.. .+|.|+|||+.+++.+..+.+| .+..++|+|||++|++++. |+.|+|||+
T Consensus 241 ~~v~~~~~~~~~~~~~~~sg~-~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~------D~~v~iWd~ 313 (318)
T 4ggc_A 241 SQVCSILWSPHYKELISGHGF-AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA------DETLRLWRC 313 (318)
T ss_dssp SCEEEEEEETTTTEEEEEECT-TTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET------TTEEEEECC
T ss_pred eeeeeeeecccccceEEEEEc-CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec------CCeEEEEEC
Confidence 889999999999998876532 5689999999999999999887 5667999999999999999 999999997
Q ss_pred c
Q 013884 315 N 315 (434)
Q Consensus 315 ~ 315 (434)
.
T Consensus 314 ~ 314 (318)
T 4ggc_A 314 F 314 (318)
T ss_dssp S
T ss_pred C
Confidence 4
No 30
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=4.3e-28 Score=235.73 Aligned_cols=275 Identities=11% Similarity=0.123 Sum_probs=196.7
Q ss_pred cceEEecCCC-cEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecC-CCcEEEEe-cCCeEEEEeCC
Q 013884 2 LLLLTCLRVG-LIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSS-DEAVACRM-ATNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g-~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~-d~~~la~~-~~~~i~v~~~~ 78 (434)
|++++|||+| ++|++++ .|+.|+|||+.+++....+.... |...+.++.|+| ++.+|+++ .++.|++||+.
T Consensus 76 v~~~~~~~~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (383)
T 3ei3_B 76 VTSLEWHPTHPTTVAVGS-----KGGDIILWDYDVQNKTSFIQGMG-PGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS 149 (383)
T ss_dssp EEEEEECSSCTTEEEEEE-----BTSCEEEEETTSTTCEEEECCCS-TTCBEEEEEEETTEEEEEEEEETTTEEEEEETT
T ss_pred EEEEEECCCCCCEEEEEc-----CCCeEEEEeCCCcccceeeecCC-cCCceeEEEeCCCCCCEEEEEeCCCEEEEEECC
Confidence 7899999999 9999999 89999999999998777665322 346777999999 77888887 46899999998
Q ss_pred CCCCceeeeee---cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013884 79 DFPKGILYRLR---VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG 155 (434)
Q Consensus 79 ~~~~~~~~~~~---~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~ 155 (434)
... ......+ ...|.+++|+|+ +..+++ .+.++.|++|++ . ...+.....+...+..+.|+|+|..
T Consensus 150 ~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~~-----~~~d~~i~i~d~-~---~~~~~~~~~h~~~v~~~~~~~~~~~ 218 (383)
T 3ei3_B 150 GSV-IQVFAKTDSWDYWYCCVDVSVS-RQMLAT-----GDSTGRLLLLGL-D---GHEIFKEKLHKAKVTHAEFNPRCDW 218 (383)
T ss_dssp SCE-EEEEECCCCSSCCEEEEEEETT-TTEEEE-----EETTSEEEEEET-T---SCEEEEEECSSSCEEEEEECSSCTT
T ss_pred CCc-eEEEeccCCCCCCeEEEEECCC-CCEEEE-----ECCCCCEEEEEC-C---CCEEEEeccCCCcEEEEEECCCCCC
Confidence 522 1222212 245999999998 455543 245679999998 3 5678888888999999999999995
Q ss_pred EEEEEEecccccCceeecceeEEEEeeCCC-ceeeeecCCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEeccce-eEE
Q 013884 156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGT-HEGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCR-PIL 232 (434)
Q Consensus 156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~-~~~~v~l~~~~~i~~~~wsp-dg~~~av~~g~~~~~i~l~d~~~~-~~~ 232 (434)
+++.++ .|...+ +|.+..... ......+.+.+.|.+++|+| +|+.|+ ++..++.|.+||++.. .+.
T Consensus 219 ~l~s~~--~d~~i~-------iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~--~~~~d~~i~iwd~~~~~~~~ 287 (383)
T 3ei3_B 219 LMATSS--VDATVK-------LWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLL--TTDQRNEIRVYSSYDWSKPD 287 (383)
T ss_dssp EEEEEE--TTSEEE-------EEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEE--EEESSSEEEEEETTBTTSCS
T ss_pred EEEEEe--CCCEEE-------EEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEE--EEcCCCcEEEEECCCCcccc
Confidence 444332 333333 333322111 12233345688999999999 999888 5677899999998632 111
Q ss_pred Ec--C-------C----------cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---Cce-EEEECC
Q 013884 233 EL--G-------S----------GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSV-TSEWSP 289 (434)
Q Consensus 233 ~~--~-------~----------~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~~~-~~~wsp 289 (434)
.+ + . +.+..+.|+|+|++ +++ .+|.|+|||+.+++.+..+..+ .++ .++|+|
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s---~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~ 362 (383)
T 3ei3_B 288 QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLN---DKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSP 362 (383)
T ss_dssp EEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTT---CCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECT
T ss_pred ccccccccccccccceEEeccCCCCceEEEecCCccc--ccC---CCCeEEEEecCCCceeeeecCCCCCceEEEEEEec
Confidence 11 1 2 22333555555555 333 5689999999999998888753 333 469999
Q ss_pred CCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884 290 DGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 290 dg~~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
||++|+++ . |+.|+||++++
T Consensus 363 ~g~~l~s~-s------d~~i~iw~~~~ 382 (383)
T 3ei3_B 363 TGDVLASG-M------GFNILIWNRED 382 (383)
T ss_dssp TSSEEEEE-E------TTEEEEEECC-
T ss_pred CccEEEEe-c------CCcEEEEecCC
Confidence 99999998 4 89999999864
No 31
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.97 E-value=4.5e-28 Score=230.66 Aligned_cols=264 Identities=12% Similarity=0.175 Sum_probs=199.6
Q ss_pred CCCCCCeeeecCC----CcEEEEec-CCeEEEEeCCCCCCce--eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceE
Q 013884 48 TKTTWPSIRFSSD----EAVACRMA-TNEIQFFDTTDFPKGI--LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASV 120 (434)
Q Consensus 48 ~~~~~~~~~~S~d----~~~la~~~-~~~i~v~~~~~~~~~~--~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v 120 (434)
|...+.+++|+++ +.+|++++ |++|+||+........ ....|...|.++.|+|+ ...++. .+.++.|
T Consensus 31 H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~-~~~l~s-----~s~D~~i 104 (321)
T 3ow8_A 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHT-LPIAAS-----SSLDAHI 104 (321)
T ss_dssp SSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSS-SSEEEE-----EETTSEE
T ss_pred CCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCC-CCEEEE-----EeCCCcE
Confidence 5577779999985 56888884 6899999986643211 23345668999999998 455543 3567899
Q ss_pred EEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEE
Q 013884 121 QIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHD 200 (434)
Q Consensus 121 ~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~ 200 (434)
++|++.+ ++.+.....+...+..+.|+|+|+.|+... .|.. +..+++...........+...|.+
T Consensus 105 ~lWd~~~---~~~~~~~~~~~~~~~~~~~spdg~~l~~g~---~dg~---------v~i~~~~~~~~~~~~~~~~~~v~~ 169 (321)
T 3ow8_A 105 RLWDLEN---GKQIKSIDAGPVDAWTLAFSPDSQYLATGT---HVGK---------VNIFGVESGKKEYSLDTRGKFILS 169 (321)
T ss_dssp EEEETTT---TEEEEEEECCTTCCCCEEECTTSSEEEEEC---TTSE---------EEEEETTTCSEEEEEECSSSCEEE
T ss_pred EEEECCC---CCEEEEEeCCCccEEEEEECCCCCEEEEEc---CCCc---------EEEEEcCCCceeEEecCCCceEEE
Confidence 9999988 777777777788888999999999876531 2322 233333333222111223568999
Q ss_pred EEECcCCCEEEEEEccCCCeEEEEeccc-eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013884 201 VQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT 277 (434)
Q Consensus 201 ~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~ 277 (434)
++|+|+|+.|+ +|..++.|++||++. ..+..+ |..++++++|+|+|++|++++ .+|.|+|||+++++.+..+
T Consensus 170 ~~~spdg~~la--sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s---~dg~i~iwd~~~~~~~~~~ 244 (321)
T 3ow8_A 170 IAYSPDGKYLA--SGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS---DDGYIKIYDVQHANLAGTL 244 (321)
T ss_dssp EEECTTSSEEE--EEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC---TTSCEEEEETTTCCEEEEE
T ss_pred EEECCCCCEEE--EEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc---CCCeEEEEECCCcceeEEE
Confidence 99999999998 577899999999964 445555 678899999999999999998 5679999999999888888
Q ss_pred eCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee--ecccceeeEEEcCCCCCCCCc
Q 013884 278 RAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK--MFDKLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 278 ~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~~--~~~~~~~~~w~p~~~~~~~~~ 343 (434)
.+| .+..++|+|||++|++++. |+.|+|||+. ++++... +...++.+.|.|++..+++..
T Consensus 245 ~~h~~~v~~~~~sp~~~~l~s~s~------D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~ 309 (321)
T 3ow8_A 245 SGHASWVLNVAFCPDDTHFVSSSS------DKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVG 309 (321)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEET------TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred cCCCCceEEEEECCCCCEEEEEeC------CCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEe
Confidence 877 4667999999999999999 9999999995 5555443 456899999999988777653
No 32
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.97 E-value=1.4e-27 Score=225.32 Aligned_cols=265 Identities=12% Similarity=0.115 Sum_probs=201.7
Q ss_pred EEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCC
Q 013884 39 VYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSP 117 (434)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~ 117 (434)
.++|..+. ..+.+++|+||+++|++++ |++|++||+...........+...|..+.|+|+ +..++. ++.+
T Consensus 6 ~~~~~~h~---~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s-----~s~d 76 (304)
T 2ynn_A 6 KKTFSNRS---DRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR-KNWIIV-----GSDD 76 (304)
T ss_dssp EEEEEEEC---SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGG-GTEEEE-----EETT
T ss_pred EEeecCCC---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCC-CCEEEE-----ECCC
Confidence 45565543 6777999999999999884 689999999875543444455667999999998 455543 3456
Q ss_pred ceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCcee-eeecCCCC
Q 013884 118 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG-LVPLRKEG 196 (434)
Q Consensus 118 ~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~-~v~l~~~~ 196 (434)
+.|++|++.+ ++.+.....|...+.++.|+|++..|+. ...|.+.+.|. +. ..... .....+..
T Consensus 77 ~~i~vwd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s---gs~D~~v~lWd-------~~--~~~~~~~~~~~h~~ 141 (304)
T 2ynn_A 77 FRIRVFNYNT---GEKVVDFEAHPDYIRSIAVHPTKPYVLS---GSDDLTVKLWN-------WE--NNWALEQTFEGHEH 141 (304)
T ss_dssp SEEEEEETTT---CCEEEEEECCSSCEEEEEECSSSSEEEE---EETTSCEEEEE-------GG--GTTEEEEEECCCCS
T ss_pred CEEEEEECCC---CcEEEEEeCCCCcEEEEEEcCCCCEEEE---ECCCCeEEEEE-------CC--CCcchhhhhcccCC
Confidence 8999999988 7888888889999999999999997653 33555555443 21 11111 12223578
Q ss_pred CeEEEEECc-CCCEEEEEEccCCCeEEEEeccc-eeEEEc---CCcCeeEEEECC--CCCeEEEEecCCCCCeEEEEEcc
Q 013884 197 PVHDVQWSY-SGSEFAVVYGFMPASATIFNKKC-RPILEL---GSGPYNTVRWNP--KGKFLCLAGFGNLPGDMAFWDYV 269 (434)
Q Consensus 197 ~i~~~~wsp-dg~~~av~~g~~~~~i~l~d~~~-~~~~~~---~~~~~~~i~~sP--~g~~l~~~~~~~~~g~i~iwd~~ 269 (434)
.|.+++|+| ++..|+ +|..|+.|++||++. .....+ +...++.+.|+| ++++|++++ .+|.|+|||++
T Consensus 142 ~v~~v~~~p~~~~~l~--sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s---~D~~i~iWd~~ 216 (304)
T 2ynn_A 142 FVMCVAFNPKDPSTFA--SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS---DDLTIKIWDYQ 216 (304)
T ss_dssp CEEEEEECTTCTTEEE--EEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEE---TTSEEEEEETT
T ss_pred cEEEEEECCCCCCEEE--EEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEc---CCCeEEEEeCC
Confidence 999999999 567777 688899999999853 222222 457789999987 778999998 56799999999
Q ss_pred CCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee--ecccceeeEEEcCCCC
Q 013884 270 DGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK--MFDKLFQAEWKPVSPD 338 (434)
Q Consensus 270 ~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~~--~~~~~~~~~w~p~~~~ 338 (434)
+++++..+.+| .+..++|+|++++|++++. |+.|+|||.. ++++... +.+.++.+.|.|.+..
T Consensus 217 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~------Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (304)
T 2ynn_A 217 TKSCVATLEGHMSNVSFAVFHPTLPIIISGSE------DGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRK 284 (304)
T ss_dssp TTEEEEEEECCSSCEEEEEECSSSSEEEEEET------TSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGG
T ss_pred CCccceeeCCCCCCEEEEEECCCCCEEEEEcC------CCeEEEEECCCCceeeeccCCCccEEEEEECCCCCc
Confidence 99999999887 5566999999999999999 9999999995 4555444 3457899999998754
No 33
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=6.7e-28 Score=253.10 Aligned_cols=275 Identities=16% Similarity=0.204 Sum_probs=202.2
Q ss_pred CcceEEecCCC-cEEEEEecCCCCCCCcEEEEEcCCC-----cEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEE
Q 013884 1 MLLLLTCLRVG-LIIQTFQKSSTPQEKNVILWKTETG-----EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQ 73 (434)
Q Consensus 1 ~V~~l~fSP~g-~~L~t~~~~~~~~d~~v~iWd~~~g-----~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~ 73 (434)
.|++|+|+|++ ++|+|++ .|+.|+|||+.++ ...+.+..+. ..+.+++|+||+++|++++ |++|+
T Consensus 384 ~V~~v~~~~~~~~~l~s~s-----~D~~i~~W~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~g~~l~sgs~Dg~v~ 455 (694)
T 3dm0_A 384 MVTAIATPIDNADIIVSAS-----RDKSIILWKLTKDDKAYGVAQRRLTGHS---HFVEDVVLSSDGQFALSGSWDGELR 455 (694)
T ss_dssp CEEEEECCTTCCSEEEEEE-----TTSEEEEEECCCSTTCSCEEEEEEECCS---SCEEEEEECTTSSEEEEEETTSEEE
T ss_pred eeEEEEecCCCCCEEEEEe-----CCCcEEEEEccCCCcccccccceecCCC---CcEEEEEECCCCCEEEEEeCCCcEE
Confidence 37899999975 7999999 8999999999763 3445555543 6777999999999999985 67999
Q ss_pred EEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee---eeecccceeEEEEC
Q 013884 74 FFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR---RSFFRCSTVQLNWN 150 (434)
Q Consensus 74 v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~---~~~~~~~~~~~~ws 150 (434)
|||+...........|...|.+++|+|++. .++. .+.++.|++|++.. ...... ...|...+.++.|+
T Consensus 456 vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s-----~s~D~~i~iwd~~~---~~~~~~~~~~~~h~~~v~~~~~~ 526 (694)
T 3dm0_A 456 LWDLAAGVSTRRFVGHTKDVLSVAFSLDNR-QIVS-----ASRDRTIKLWNTLG---ECKYTISEGGEGHRDWVSCVRFS 526 (694)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECTTSS-CEEE-----EETTSCEEEECTTS---CEEEEECSSTTSCSSCEEEEEEC
T ss_pred EEECCCCcceeEEeCCCCCEEEEEEeCCCC-EEEE-----EeCCCEEEEEECCC---CcceeeccCCCCCCCcEEEEEEe
Confidence 999987654444455677899999999954 4432 35667999999754 221111 12456678899999
Q ss_pred CCCCe-EEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-c
Q 013884 151 RGSTG-LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-C 228 (434)
Q Consensus 151 ~~G~~-l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~ 228 (434)
|++.. +++. ...|.+.+.| ++...........+.+.|.+++|+|+|+.|+ +|+.|+.|++||++ +
T Consensus 527 ~~~~~~~l~s--~s~d~~v~vw---------d~~~~~~~~~~~~h~~~v~~v~~spdg~~l~--sg~~Dg~i~iwd~~~~ 593 (694)
T 3dm0_A 527 PNTLQPTIVS--ASWDKTVKVW---------NLSNCKLRSTLAGHTGYVSTVAVSPDGSLCA--SGGKDGVVLLWDLAEG 593 (694)
T ss_dssp SCSSSCEEEE--EETTSCEEEE---------ETTTCCEEEEECCCSSCEEEEEECTTSSEEE--EEETTSBCEEEETTTT
T ss_pred CCCCcceEEE--EeCCCeEEEE---------ECCCCcEEEEEcCCCCCEEEEEEeCCCCEEE--EEeCCCeEEEEECCCC
Confidence 99843 3222 2245444433 2223222222234578999999999999988 67889999999996 4
Q ss_pred eeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---------------------CceEEE
Q 013884 229 RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---------------------CSVTSE 286 (434)
Q Consensus 229 ~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---------------------~~~~~~ 286 (434)
..+..+ +...+++++|+|++.+|+++. ++.|+|||+++++.+..+..+ .++.++
T Consensus 594 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 669 (694)
T 3dm0_A 594 KKLYSLEANSVIHALCFSPNRYWLCAAT----EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLN 669 (694)
T ss_dssp EEEECCBCSSCEEEEEECSSSSEEEEEE----TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEE
T ss_pred ceEEEecCCCcEEEEEEcCCCcEEEEEc----CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEE
Confidence 555555 567899999999999888765 236999999999887765421 135689
Q ss_pred ECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884 287 WSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 287 wspdg~~l~tas~~~rl~~D~~i~iw~~~ 315 (434)
|||||++|++++. |+.|+||++.
T Consensus 670 ~spdg~~l~sgs~------Dg~i~iW~i~ 692 (694)
T 3dm0_A 670 WSADGSTLFSGYT------DGVIRVWGIG 692 (694)
T ss_dssp ECTTSSEEEEEET------TSEEEEEEC-
T ss_pred EcCCCCEEEEEcC------CCeEEEEecc
Confidence 9999999999999 9999999974
No 34
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.97 E-value=1.6e-29 Score=248.45 Aligned_cols=304 Identities=12% Similarity=0.093 Sum_probs=213.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
+++++|||+|++|++++ .|+.|++||+.+++....+..+ .......|++|+++|+++. ++.|++|++...
T Consensus 59 ~~~~~~s~~g~~l~~~~-----~d~~v~i~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 129 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKAR-----LDGHDFLFNTIIRDGSKMLKRA----DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN 129 (420)
T ss_dssp CTTCEEEEEETTEEEEE-----ETTEEEEEECCSEETTTTSCSC----CEEEEEEECSSSCEEEEEETTSCEEEECTTSC
T ss_pred ccceeeeecCCeEEEEE-----cCCcEEEEEecccceeeEEecC----CceEEEEEecCCCEEEEEECCCCEEEEeCCCc
Confidence 35789999999999999 7899999999887654333322 2232457899999999984 679999998865
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
........+...|.+++|+|+ +..++. .+.++.|++|++.. .+.+.....|...+..+.|+|+|+.|+..
T Consensus 130 ~~~~~~~~h~~~v~~~~~~~~-~~~l~s-----~s~d~~i~iwd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~- 199 (420)
T 3vl1_A 130 LQREIDQAHVSEITKLKFFPS-GEALIS-----SSQDMQLKIWSVKD---GSNPRTLIGHRATVTDIAIIDRGRNVLSA- 199 (420)
T ss_dssp EEEEETTSSSSCEEEEEECTT-SSEEEE-----EETTSEEEEEETTT---CCCCEEEECCSSCEEEEEEETTTTEEEEE-
T ss_pred ceeeecccccCccEEEEECCC-CCEEEE-----EeCCCeEEEEeCCC---CcCceEEcCCCCcEEEEEEcCCCCEEEEE-
Confidence 432222345678999999998 455543 34567999999988 67777888899999999999999987643
Q ss_pred EecccccCceeecce--eEEEEeeCCCceee-------------eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEe
Q 013884 161 QSDVDKTNQSYYGES--KLNYLTTDGTHEGL-------------VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFN 225 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~--~l~~l~~~~~~~~~-------------v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d 225 (434)
..|.+.+.|.-.. .+..+......... +......++.+++|+|+|+.++ ++..++.|.+||
T Consensus 200 --~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~--~~~~dg~i~i~d 275 (420)
T 3vl1_A 200 --SLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVI--AGHVSGVITVHN 275 (420)
T ss_dssp --ETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEE--EEETTSCEEEEE
T ss_pred --cCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEE--EEcCCCeEEEEE
Confidence 2455555443211 11111110000000 0000135566677789998887 577899999999
Q ss_pred ccc-eeEEEc---CCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCEE-EEEeeC-C-CceEEEECCCCCEEEEE
Q 013884 226 KKC-RPILEL---GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQ-LGTTRA-E-CSVTSEWSPDGRYFMTA 297 (434)
Q Consensus 226 ~~~-~~~~~~---~~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~~~~-i~~~~~-~-~~~~~~wspdg~~l~ta 297 (434)
++. ..+..+ +...+++++|+|+|+ +|++++ .+|.|++||+.+++. +..+.. + ..+...++|+|++|+++
T Consensus 276 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~---~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~ 352 (420)
T 3vl1_A 276 VFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGY---ENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSS 352 (420)
T ss_dssp TTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEE---TTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEE
T ss_pred CCCCceeEEcccccCCCceeEEEeCCCCCEEEEEe---CCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEe
Confidence 964 334443 567899999999999 898888 567999999988642 444443 2 44444466789999999
Q ss_pred EcCCceeeCCcEEEEeecCc------------eeeeeecccceeeEEEcCCC
Q 013884 298 TTAPRLQIDNGIKIFHHNGS------------LFFKKMFDKLFQAEWKPVSP 337 (434)
Q Consensus 298 s~~~rl~~D~~i~iw~~~g~------------~~~~~~~~~~~~~~w~p~~~ 337 (434)
+. |+.|+||++... .....+...+..+.|.|++.
T Consensus 353 ~~------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 398 (420)
T 3vl1_A 353 GF------DTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDE 398 (420)
T ss_dssp TT------TEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSS
T ss_pred cC------CccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCC
Confidence 98 999999998551 12223445789999999987
No 35
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=1.3e-27 Score=266.24 Aligned_cols=306 Identities=13% Similarity=0.141 Sum_probs=228.4
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|++++|||+|++|++++ .|+.|+|||+.+++.+..+..+. ..+.+++|+||+++|++++ +++|+|||+.+.
T Consensus 618 v~~~~~s~~~~~l~s~~-----~d~~i~vw~~~~~~~~~~~~~h~---~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~ 689 (1249)
T 3sfz_A 618 VYHACFSQDGQRIASCG-----ADKTLQVFKAETGEKLLDIKAHE---DEVLCCAFSSDDSYIATCSADKKVKIWDSATG 689 (1249)
T ss_dssp EEEEEECTTSSEEEEEE-----TTSCEEEEETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred EEEEEECCCCCEEEEEe-----CCCeEEEEECCCCCEEEEeccCC---CCEEEEEEecCCCEEEEEeCCCeEEEEECCCC
Confidence 78999999999999999 89999999999999999887643 6777999999999999985 679999999886
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
........+...|..+.|+|+++..+.+. ++.++.|++|++.+ +..+.....|...+..+.|+|+|+.++...
T Consensus 690 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s----g~~d~~v~vwd~~~---~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s 762 (1249)
T 3sfz_A 690 KLVHTYDEHSEQVNCCHFTNKSNHLLLAT----GSNDFFLKLWDLNQ---KECRNTMFGHTNSVNHCRFSPDDELLASCS 762 (1249)
T ss_dssp CEEEEEECCSSCEEEEEECSSSSCCEEEE----EETTSCEEEEETTS---SSEEEEECCCSSCEEEEEECSSTTEEEEEE
T ss_pred ceEEEEcCCCCcEEEEEEecCCCceEEEE----EeCCCeEEEEECCC---cchhheecCCCCCEEEEEEecCCCEEEEEE
Confidence 65445556677899999999754433221 34567899999988 777888888888999999999999765432
Q ss_pred EecccccCceeecce---------------------------------------------eE------------------
Q 013884 161 QSDVDKTNQSYYGES---------------------------------------------KL------------------ 177 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~---------------------------------------------~l------------------ 177 (434)
.|.+.+.|.-.. .+
T Consensus 763 ---~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~ 839 (1249)
T 3sfz_A 763 ---ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGH 839 (1249)
T ss_dssp ---SSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSS
T ss_pred ---CCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCC
Confidence 333333332100 00
Q ss_pred -------------------------EEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce---
Q 013884 178 -------------------------NYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--- 229 (434)
Q Consensus 178 -------------------------~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~--- 229 (434)
..++............+.+.|.+++|+|+|+.|+ +++.++.+++||+...
T Consensus 840 ~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~--s~s~dg~v~vw~~~~~~~~ 917 (1249)
T 3sfz_A 840 HSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFL--TASDDQTIRVWETKKVCKN 917 (1249)
T ss_dssp SSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE--EEETTSCEEEEEHHHHHSC
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEE--EEeCCCeEEEEEcccccee
Confidence 1111111111111123467899999999999988 5777899999986420
Q ss_pred -------------------------------------eEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE
Q 013884 230 -------------------------------------PILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK 272 (434)
Q Consensus 230 -------------------------------------~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~ 272 (434)
.........+.+++|+|+|+++++++ .+|.|.+||+.+++
T Consensus 918 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~---~~g~i~i~d~~~~~ 994 (1249)
T 3sfz_A 918 SAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGD---EDGAIKIIELPNNR 994 (1249)
T ss_dssp CSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEE---TTSCCEEEETTTTS
T ss_pred eeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEc---CCCCEEEEEcCCCc
Confidence 01112356789999999999999998 56799999999998
Q ss_pred EEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeee-eecccceeeEEEcCC
Q 013884 273 QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFK-KMFDKLFQAEWKPVS 336 (434)
Q Consensus 273 ~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~-~~~~-~~~~~~~~~~w~p~~ 336 (434)
.+..+.+| .+..++|+|||++|++++. |+.|++|++... .+.. .+...+..+.|.|..
T Consensus 995 ~~~~~~~h~~~v~~l~~s~dg~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~ 1056 (1249)
T 3sfz_A 995 VFSSGVGHKKAVRHIQFTADGKTLISSSE------DSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDS 1056 (1249)
T ss_dssp CEEECCCCSSCCCCEEECSSSSCEEEECS------SSBEEEEETTTTEEECCBCCSSCEEEEEECSSS
T ss_pred eeeecccCCCceEEEEECCCCCEEEEEcC------CCEEEEEECCCCceEEEecCCCcEEEEEEcCCC
Confidence 88877766 5666999999999999999 999999999654 3322 244567888888754
No 36
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.96 E-value=1.6e-27 Score=228.38 Aligned_cols=280 Identities=10% Similarity=0.127 Sum_probs=198.5
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC---CcEEEEec-CCeEEEEeC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD---EAVACRMA-TNEIQFFDT 77 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d---~~~la~~~-~~~i~v~~~ 77 (434)
|.+++|||+|.+|++.+-. ...|+.|+|||+.+++........ +...+.+++|+|+ +.+|+++. ++.|++|++
T Consensus 21 v~~~~~~p~~~~l~~~~s~-~~~d~~v~iw~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 97 (357)
T 3i2n_A 21 VFDCKWVPCSAKFVTMGNF-ARGTGVIQLYEIQHGDLKLLREIE--KAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNL 97 (357)
T ss_dssp EEEEEECTTSSEEEEEEC---CCCEEEEEEEECSSSEEEEEEEE--ESSCEEEEECTTCCTTTCCEEEEETTSCEEEECT
T ss_pred eEEEEEcCCCceEEEecCc-cCCCcEEEEEeCCCCcccceeeec--ccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeC
Confidence 7899999999766644410 012899999999999875543322 2367779999998 68888875 689999999
Q ss_pred CCCC-CceeeeeecCCeeEEEE------eCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc----ceeE
Q 013884 78 TDFP-KGILYRLRVPGVAAFEV------SKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC----STVQ 146 (434)
Q Consensus 78 ~~~~-~~~~~~~~~~~v~~~~~------sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~----~~~~ 146 (434)
.... .......+...|..+.| +|+ +..+++ .+.++.|++|++... ...+.....+.. .+..
T Consensus 98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~-~~~l~~-----~~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~v~~ 169 (357)
T 3i2n_A 98 EAPEMPVYSVKGHKEIINAIDGIGGLGIGEG-APEIVT-----GSRDGTVKVWDPRQK--DDPVANMEPVQGENKRDCWT 169 (357)
T ss_dssp TSCSSCSEEECCCSSCEEEEEEESGGGCC-C-CCEEEE-----EETTSCEEEECTTSC--SSCSEEECCCTTSCCCCEEE
T ss_pred CCCCccEEEEEecccceEEEeeccccccCCC-ccEEEE-----EeCCCeEEEEeCCCC--CCcceeccccCCCCCCceEE
Confidence 8765 33444556677888865 555 344443 245678999999872 224555544333 5566
Q ss_pred EE----ECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECc---CCCEEEEEEccCCC
Q 013884 147 LN----WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY---SGSEFAVVYGFMPA 219 (434)
Q Consensus 147 ~~----ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wsp---dg~~~av~~g~~~~ 219 (434)
+. |+++|..+++.. .|. .++.+++... .......+...|.+++|+| ++..|+ ++..++
T Consensus 170 ~~~~~~~~~~~~~l~~~~---~d~---------~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~l~--~~~~dg 234 (357)
T 3i2n_A 170 VAFGNAYNQEERVVCAGY---DNG---------DIKLFDLRNM-ALRWETNIKNGVCSLEFDRKDISMNKLV--ATSLEG 234 (357)
T ss_dssp EEEECCCC-CCCEEEEEE---TTS---------EEEEEETTTT-EEEEEEECSSCEEEEEESCSSSSCCEEE--EEESTT
T ss_pred EEEEeccCCCCCEEEEEc---cCC---------eEEEEECccC-ceeeecCCCCceEEEEcCCCCCCCCEEE--EECCCC
Confidence 66 789999876542 222 2444444444 2333344578999999999 898888 467789
Q ss_pred eEEEEecccee---EE-----EcCCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCC-------------------
Q 013884 220 SATIFNKKCRP---IL-----ELGSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDG------------------- 271 (434)
Q Consensus 220 ~i~l~d~~~~~---~~-----~~~~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~~------------------- 271 (434)
.+.+||++... .. ..|...+++++|+|+|+ +|++++ .+|.|++||+++.
T Consensus 235 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~ 311 (357)
T 3i2n_A 235 KFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAG---GAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSV 311 (357)
T ss_dssp EEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEE---TTSEEEEEEEECCSCC--CCTTSCCCCCCCEE
T ss_pred eEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEe---CCCcEEEeecCCCcccccccCCCCcccccccc
Confidence 99999986322 11 14788999999999999 788888 5679999998753
Q ss_pred EEEEEeeCC--CceEEEECCCCCEEE-EEEcCCceeeCCcEEEEeecC
Q 013884 272 KQLGTTRAE--CSVTSEWSPDGRYFM-TATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 272 ~~i~~~~~~--~~~~~~wspdg~~l~-tas~~~rl~~D~~i~iw~~~g 316 (434)
+.+..+..| .+..++|+|+|++|+ +++. |+.|+||++..
T Consensus 312 ~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~------d~~i~iw~~~~ 353 (357)
T 3i2n_A 312 SLLQNVTLSTQPISSLDWSPDKRGLCVCSSF------DQTVRVLIVTK 353 (357)
T ss_dssp EEEEEEECCSSCEEEEEECSSSTTEEEEEET------TSEEEEEEECC
T ss_pred ceeeccccCCCCeeEEEEcCCCCeEEEEecC------CCcEEEEECCC
Confidence 456666665 566799999999998 7888 99999999854
No 37
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.96 E-value=3.7e-27 Score=231.06 Aligned_cols=277 Identities=15% Similarity=0.211 Sum_probs=206.0
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCC
Q 013884 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFP 81 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~ 81 (434)
.+++||+ ..|++++ .|+.|+|||+.+++.+..+... +...+.+++|+||+++|+++. ++.|++||+....
T Consensus 97 ~~~~~s~--~~l~~~~-----~d~~v~lw~~~~~~~~~~~~~~--~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 167 (401)
T 4aez_A 97 NLLDWSN--LNVVAVA-----LERNVYVWNADSGSVSALAETD--ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT 167 (401)
T ss_dssp BCEEECT--TSEEEEE-----ETTEEEEEETTTCCEEEEEECC--TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred EEEeecC--CCEEEEE-----CCCeEEEeeCCCCcEeEeeecC--CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe
Confidence 3466665 5577777 6899999999999988777654 336778999999999999985 6799999998766
Q ss_pred CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013884 82 KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ 161 (434)
Q Consensus 82 ~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~ 161 (434)
.......+...|..+.|++ ..+++ ++.++.|++|++... ...+.....+...+..+.|+|+|..|++..
T Consensus 168 ~~~~~~~~~~~v~~~~~~~---~~l~~-----~~~dg~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~- 236 (401)
T 4aez_A 168 KLRTMAGHQARVGCLSWNR---HVLSS-----GSRSGAIHHHDVRIA--NHQIGTLQGHSSEVCGLAWRSDGLQLASGG- 236 (401)
T ss_dssp EEEEECCCSSCEEEEEEET---TEEEE-----EETTSEEEEEETTSS--SCEEEEEECCSSCEEEEEECTTSSEEEEEE-
T ss_pred EEEEecCCCCceEEEEECC---CEEEE-----EcCCCCEEEEecccC--cceeeEEcCCCCCeeEEEEcCCCCEEEEEe-
Confidence 4444455667899999964 34432 345679999999842 566777778899999999999999876532
Q ss_pred ecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEE-ccCCCeEEEEecc-ceeEEEc-CCcC
Q 013884 162 SDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVY-GFMPASATIFNKK-CRPILEL-GSGP 238 (434)
Q Consensus 162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~-g~~~~~i~l~d~~-~~~~~~~-~~~~ 238 (434)
.|... ..++............+...|.+++|+|++..+++.. |..++.+.+||++ +..+..+ +...
T Consensus 237 --~d~~v---------~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~ 305 (401)
T 4aez_A 237 --NDNVV---------QIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQ 305 (401)
T ss_dssp --TTSCE---------EEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSC
T ss_pred --CCCeE---------EEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 33333 3333333322222234578999999999887766543 3479999999996 4445555 5778
Q ss_pred eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE--eeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884 239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT--TRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 239 ~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~--~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~ 314 (434)
+++++|+|+|++|++++. ..+|.|.+||+.+++.... +.+| .+..++|+|||++|++++. |+.|+||++
T Consensus 306 v~~~~~s~~~~~l~~~~g-~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~------dg~i~iw~~ 378 (401)
T 4aez_A 306 VTSLIWSPHSKEIMSTHG-FPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAAS------DENLKFWRV 378 (401)
T ss_dssp EEEEEECSSSSEEEEEEC-TTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECT------TSEEEEEEC
T ss_pred EEEEEECCCCCeEEEEee-cCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeC------CCcEEEEEC
Confidence 999999999999998631 1458999999998754443 4444 6677999999999999999 999999999
Q ss_pred cCc
Q 013884 315 NGS 317 (434)
Q Consensus 315 ~g~ 317 (434)
...
T Consensus 379 ~~~ 381 (401)
T 4aez_A 379 YDG 381 (401)
T ss_dssp CC-
T ss_pred CCC
Confidence 543
No 38
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.96 E-value=3.5e-27 Score=229.84 Aligned_cols=274 Identities=14% Similarity=0.195 Sum_probs=201.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc------EEEEEeecCcCCCCCCeeeecCC----C---cEEEEec
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE------AVYQLFQKNMTKTTWPSIRFSSD----E---AVACRMA 68 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~------~~~~~~~~~~~~~~~~~~~~S~d----~---~~la~~~ 68 (434)
|++|+|+| ++|++++ .|+.|+|||+.+++ .+..+..+. ..+.++.|+|+ + ++|+++.
T Consensus 19 i~~~~~~~--~~l~s~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~g~~~~~l~s~~ 88 (397)
T 1sq9_A 19 IFSVSACN--SFTVSCS-----GDGYLKVWDNKLLDNENPKDKSYSHFVHK---SGLHHVDVLQAIERDAFELCLVATTS 88 (397)
T ss_dssp EEEEEECS--SEEEEEE-----TTSEEEEEESBCCTTCCGGGGEEEEECCT---TCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred eEEEEecC--CeEEEEc-----CCCEEEEEECCCcccccCCCcceEEecCC---CcEEEEEEecccccCCccccEEEEEc
Confidence 78999999 8999999 89999999999988 677776543 67779999999 9 8888874
Q ss_pred -CCeEEEEeCCCCCC-----ceeeeee-----cCCeeEEEEe----CCCCCe-EEEEecCCCCCCceEEEEEcCCCCC--
Q 013884 69 -TNEIQFFDTTDFPK-----GILYRLR-----VPGVAAFEVS----KAPGSH-VAVFVPESKGSPASVQIYACGKDLQ-- 130 (434)
Q Consensus 69 -~~~i~v~~~~~~~~-----~~~~~~~-----~~~v~~~~~s----p~~~~~-ia~~~~~~~~~~~~v~i~~~~~~~~-- 130 (434)
++.|++|++..... ......+ ...|..+.|+ |++ .. +++ .+.++.|++|++.....
T Consensus 89 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~-----~~~dg~i~iwd~~~~~~~~ 162 (397)
T 1sq9_A 89 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVA-----TDVKGTTYIWKFHPFADES 162 (397)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEE-----EETTSCEEEEEEESSSSHH
T ss_pred CCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC-ceEEEE-----EeCCCcEEEEeCCcccccc
Confidence 68999999877553 2333334 3679999999 874 44 443 23457899999976100
Q ss_pred -CCcee-----ee-------eecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC----
Q 013884 131 -SQPLA-----RR-------SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR---- 193 (434)
Q Consensus 131 -~~~i~-----~~-------~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~---- 193 (434)
...+. .. ..+...+..+.|+|+| .+++. ..|.. ++.+++... .....+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~---~~dg~---------i~i~d~~~~-~~~~~~~~~~~ 228 (397)
T 1sq9_A 163 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATG---FNNGT---------VQISELSTL-RPLYNFESQHS 228 (397)
T ss_dssp HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEE---CTTSE---------EEEEETTTT-EEEEEEECCC-
T ss_pred ccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEE---eCCCc---------EEEEECCCC-ceeEEEecccc
Confidence 01222 33 2356778899999999 54332 12322 333343332 2222222
Q ss_pred C---CCCeEEEEECcCCCEEEEEEccCC---CeEEEEecc-ceeEEEc---------------CCcCeeEEEECCCCCeE
Q 013884 194 K---EGPVHDVQWSYSGSEFAVVYGFMP---ASATIFNKK-CRPILEL---------------GSGPYNTVRWNPKGKFL 251 (434)
Q Consensus 194 ~---~~~i~~~~wspdg~~~av~~g~~~---~~i~l~d~~-~~~~~~~---------------~~~~~~~i~~sP~g~~l 251 (434)
+ ..+|.+++|+|+++.|++ +..+ +.|.+||++ ...+..+ +...+.+++|+|+|++|
T Consensus 229 h~~~~~~i~~i~~~~~~~~l~~--~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 306 (397)
T 1sq9_A 229 MINNSNSIRSVKFSPQGSLLAI--AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL 306 (397)
T ss_dssp --CCCCCEEEEEECSSTTEEEE--EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEE
T ss_pred ccccCCccceEEECCCCCEEEE--EecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEE
Confidence 3 789999999999999884 6667 899999986 3444444 56889999999999999
Q ss_pred EEEecCCCCCeEEEEEccCCEEEEEee------C-----------------CCceEEEECCCC----------CEEEEEE
Q 013884 252 CLAGFGNLPGDMAFWDYVDGKQLGTTR------A-----------------ECSVTSEWSPDG----------RYFMTAT 298 (434)
Q Consensus 252 ~~~~~~~~~g~i~iwd~~~~~~i~~~~------~-----------------~~~~~~~wspdg----------~~l~tas 298 (434)
++++ .+|.|+|||+.+++.+..+. . ..+..++|+||| ++|++++
T Consensus 307 ~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~ 383 (397)
T 1sq9_A 307 CSAG---WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVC 383 (397)
T ss_dssp EEEE---TTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEE
T ss_pred EEEe---CCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEec
Confidence 9998 56799999999999988888 3 346669999999 7999999
Q ss_pred cCCceeeCCcEEEEeecC
Q 013884 299 TAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 299 ~~~rl~~D~~i~iw~~~g 316 (434)
. |+.|+||++.+
T Consensus 384 ~------dg~i~iw~~~~ 395 (397)
T 1sq9_A 384 L------DRSIRWFREAG 395 (397)
T ss_dssp T------TTEEEEEEEEC
T ss_pred C------CCcEEEEEcCC
Confidence 9 99999999864
No 39
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.96 E-value=6.7e-28 Score=239.07 Aligned_cols=281 Identities=14% Similarity=0.136 Sum_probs=197.0
Q ss_pred cceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecC-CCcEEEEec-CCeEEEEeCC
Q 013884 2 LLLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSS-DEAVACRMA-TNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~-d~~~la~~~-~~~i~v~~~~ 78 (434)
|+||+||| ++++||+++ .|++|+|||+.+++....+.... |...|.+++|+| |+.+|++++ |++|++||+.
T Consensus 122 V~~l~~~P~~~~~lasGs-----~dg~i~lWd~~~~~~~~~~~~~g-H~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~ 195 (435)
T 4e54_B 122 ATSLAWHPTHPSTVAVGS-----KGGDIMLWNFGIKDKPTFIKGIG-AGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK 195 (435)
T ss_dssp EEEEEECSSCTTCEEEEE-----TTSCEEEECSSCCSCCEEECCCS-SSCCCCEEEECSSCTTEEEEECSSSCEEEEETT
T ss_pred EEEEEEeCCCCCEEEEEe-----CCCEEEEEECCCCCceeEEEccC-CCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc
Confidence 78999999 578999999 89999999998876544333221 447888999998 788898884 6899999987
Q ss_pred CCCCceeeeee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013884 79 DFPKGILYRLR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL 156 (434)
Q Consensus 79 ~~~~~~~~~~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l 156 (434)
..........+ ...+.+++|+|+ +.++++ ++.++.|++|++.. +.+.....|...+..+.|+|++..+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~-----g~~dg~i~~wd~~~----~~~~~~~~h~~~v~~v~~~p~~~~~ 265 (435)
T 4e54_B 196 GNILRVFASSDTINIWFCSLDVSAS-SRMVVT-----GDNVGNVILLNMDG----KELWNLRMHKKKVTHVALNPCCDWF 265 (435)
T ss_dssp SCEEEEEECCSSCSCCCCCEEEETT-TTEEEE-----ECSSSBEEEEESSS----CBCCCSBCCSSCEEEEEECTTCSSE
T ss_pred CCceeEEeccCCCCccEEEEEECCC-CCEEEE-----EeCCCcEeeeccCc----ceeEEEecccceEEeeeecCCCceE
Confidence 53211111111 124678899998 455553 35678999999854 5566777888899999999999977
Q ss_pred EEEEEecccccCceeecceeEEEEeeCCCcee-eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEEEc
Q 013884 157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG-LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL 234 (434)
Q Consensus 157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~-~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~~ 234 (434)
++.++ .|.+.+. |.+........ .....+..+|.+++|+|+|+.|+ +++.|+.|+|||++. .....+
T Consensus 266 ~~s~s--~d~~v~i-------wd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~--s~~~D~~i~iwd~~~~~~~~~~ 334 (435)
T 4e54_B 266 LATAS--VDQTVKI-------WDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLL--TTDQKSEIRVYSASQWDCPLGL 334 (435)
T ss_dssp EEEEE--TTSBCCE-------EETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEE--EEESSSCEEEEESSSSSSEEEE
T ss_pred EEEec--CcceeeE-------EecccccccceEEEeeeccccccceeECCCCCeeE--EEcCCCEEEEEECCCCccceEE
Confidence 65443 4555553 33322111111 11234578999999999999988 578899999999863 333322
Q ss_pred --CC------cCeeEEEECCCCCeEEEEecCC---------CCCeEEEEEccCCEEEEEeeC-C--CceE-EEECCCCCE
Q 013884 235 --GS------GPYNTVRWNPKGKFLCLAGFGN---------LPGDMAFWDYVDGKQLGTTRA-E--CSVT-SEWSPDGRY 293 (434)
Q Consensus 235 --~~------~~~~~i~~sP~g~~l~~~~~~~---------~~g~i~iwd~~~~~~i~~~~~-~--~~~~-~~wspdg~~ 293 (434)
+. .....+.|+|++.+++++...+ .++.|++||..+++.+..+.. | .+.. ++|||||++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~ 414 (435)
T 4e54_B 335 IPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDT 414 (435)
T ss_dssp CCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSC
T ss_pred ecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCE
Confidence 11 1234567888888888775422 235799999999988877643 3 3444 479999999
Q ss_pred EEEEEcCCceeeCCcEEEEeecC
Q 013884 294 FMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 294 l~tas~~~rl~~D~~i~iw~~~g 316 (434)
|++++ |+.|+||++..
T Consensus 415 lasg~-------d~~i~iW~~~~ 430 (435)
T 4e54_B 415 LASAM-------GYHILIWSQQE 430 (435)
T ss_dssp EEEEC-------SSEEEECCCC-
T ss_pred EEEEc-------CCcEEEEECCc
Confidence 98764 78999999843
No 40
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.96 E-value=2.8e-27 Score=252.10 Aligned_cols=274 Identities=12% Similarity=0.082 Sum_probs=211.1
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|++++|||+|++|++++ .|+.|+|||+.+++.+..+..+. ..+.++.|+||+++|++++ ++.|+||+..+.
T Consensus 16 v~~i~~sp~~~~la~~~-----~~g~v~iwd~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 87 (814)
T 3mkq_A 16 VKGIDFHPTEPWVLTTL-----YSGRVEIWNYETQVEVRSIQVTE---TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87 (814)
T ss_dssp EEEEEECSSSSEEEEEE-----TTSEEEEEETTTTEEEEEEECCS---SCEEEEEEEGGGTEEEEEETTSEEEEEETTTC
T ss_pred eEEEEECCCCCEEEEEe-----CCCEEEEEECCCCceEEEEecCC---CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 78999999999999998 78999999999999999887644 6777999999999999985 579999999886
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECC-CCCeEEEE
Q 013884 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR-GSTGLLAV 159 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~-~G~~l~~~ 159 (434)
........+...|..++|+|+ +..+++ .+.++.|++|++... .........+...+.++.|+| +|..+++.
T Consensus 88 ~~~~~~~~~~~~v~~~~~s~~-~~~l~~-----~~~dg~i~vw~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 159 (814)
T 3mkq_A 88 EKVVDFEAHPDYIRSIAVHPT-KPYVLS-----GSDDLTVKLWNWENN--WALEQTFEGHEHFVMCVAFNPKDPSTFASG 159 (814)
T ss_dssp CEEEEEECCSSCEEEEEECSS-SSEEEE-----EETTSEEEEEEGGGT--SEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred cEEEEEecCCCCEEEEEEeCC-CCEEEE-----EcCCCEEEEEECCCC--ceEEEEEcCCCCcEEEEEEEcCCCCEEEEE
Confidence 654445556678999999998 455553 245679999999762 255666677888899999999 66665443
Q ss_pred EEecccccCceeecceeEEEEeeCCCc-eeeeecCCCCCeEEEEECc--CCCEEEEEEccCCCeEEEEeccc-eeEEEc-
Q 013884 160 AQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSY--SGSEFAVVYGFMPASATIFNKKC-RPILEL- 234 (434)
Q Consensus 160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~~~~i~~~~wsp--dg~~~av~~g~~~~~i~l~d~~~-~~~~~~- 234 (434)
+ .|.+ +..++..... ...+...+..++..++|+| ++..++ ++..++.+.+||++. ..+..+
T Consensus 160 -~--~dg~---------v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~--~~~~dg~i~~~d~~~~~~~~~~~ 225 (814)
T 3mkq_A 160 -C--LDRT---------VKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI--TASDDLTIKIWDYQTKSCVATLE 225 (814)
T ss_dssp -E--TTSE---------EEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEE--EECTTSEEEEEETTTTEEEEEEE
T ss_pred -e--CCCe---------EEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEE--EEeCCCEEEEEECCCCcEEEEEc
Confidence 2 3332 3333332221 2222333358899999999 888887 577889999999863 444444
Q ss_pred -CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEE-EEEEcCCceeeCCcEE
Q 013884 235 -GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYF-MTATTAPRLQIDNGIK 310 (434)
Q Consensus 235 -~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l-~tas~~~rl~~D~~i~ 310 (434)
|...+.+++|+|+|++|++++ .+|.|++||+.+++.+..+..+ .+..++|+|+|+.+ ++++. |+++.
T Consensus 226 ~~~~~v~~~~~~~~~~~l~~~~---~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------~~~~~ 296 (814)
T 3mkq_A 226 GHMSNVSFAVFHPTLPIIISGS---EDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF------DNGFT 296 (814)
T ss_dssp CCSSCEEEEEECSSSSEEEEEE---TTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE------TTEEE
T ss_pred CCCCCEEEEEEcCCCCEEEEEe---CCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe------CCCEE
Confidence 678999999999999999998 5679999999999888887765 56679999999843 44445 78888
Q ss_pred EEee
Q 013884 311 IFHH 314 (434)
Q Consensus 311 iw~~ 314 (434)
+|++
T Consensus 297 ~~~~ 300 (814)
T 3mkq_A 297 VLSL 300 (814)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 8886
No 41
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.96 E-value=1.3e-26 Score=222.24 Aligned_cols=273 Identities=12% Similarity=0.073 Sum_probs=202.9
Q ss_pred cEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCC
Q 013884 37 EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKG 115 (434)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~ 115 (434)
+...++.++ ...+.+++|+||+++|++++ |++|+|||............+...|..++|+|+ +.++++ ++
T Consensus 46 ~~~~~l~gH---~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s-----~~ 116 (340)
T 1got_B 46 RTRRTLRGH---LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS-GNYVAC-----GG 116 (340)
T ss_dssp CEEEEECCC---SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTT-SSEEEE-----EE
T ss_pred hhheeecCC---CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCC-CCEEEE-----Ee
Confidence 445566554 36777999999999999985 679999999876654445566677999999998 455553 34
Q ss_pred CCceEEEEEcCCCCC-CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCC
Q 013884 116 SPASVQIYACGKDLQ-SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK 194 (434)
Q Consensus 116 ~~~~v~i~~~~~~~~-~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~ 194 (434)
.++.|++|++..... .........|...+..+.|++++. ++. ...|.+.+.| ++...........+
T Consensus 117 ~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s---~s~d~~i~~w---------d~~~~~~~~~~~~h 183 (340)
T 1got_B 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVT---SSGDTTCALW---------DIETGQQTTTFTGH 183 (340)
T ss_dssp TTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEE---EETTSCEEEE---------ETTTTEEEEEECCC
T ss_pred CCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEE---EECCCcEEEE---------ECCCCcEEEEEcCC
Confidence 567999999976311 123445566777888999998876 322 2244444433 33332111122235
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013884 195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 271 (434)
Q Consensus 195 ~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~ 271 (434)
.+.|.+++|+|+++.|+ +|..|+.|++||++. ..+..+ |...+++++|+|+|++|++++ .+|.|++||+.++
T Consensus 184 ~~~v~~~~~~~~~~~l~--sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s---~d~~v~iwd~~~~ 258 (340)
T 1got_B 184 TGDVMSLSLAPDTRLFV--SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS---DDATCRLFDLRAD 258 (340)
T ss_dssp SSCEEEEEECTTSSEEE--EEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTTT
T ss_pred CCceEEEEECCCCCEEE--EEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc---CCCcEEEEECCCC
Confidence 78999999999999888 688899999999964 344444 788999999999999999999 5679999999999
Q ss_pred EEEEEeeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeee--eecccceeeEEEcCCCCCCCC
Q 013884 272 KQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK--KMFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 272 ~~i~~~~~~----~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~--~~~~~~~~~~w~p~~~~~~~~ 342 (434)
+.+..+.+. .+..++|+|+|++|++++. |+.|+|||+. ++.+.. .+...+.++.|.|++..+++.
T Consensus 259 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~------d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~ 330 (340)
T 1got_B 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYD------DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330 (340)
T ss_dssp EEEEEECCTTCCSCEEEEEECTTSSEEEEEET------TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEE
T ss_pred cEEEEEccCCcccceEEEEECCCCCEEEEECC------CCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEE
Confidence 887777543 4567999999999999999 9999999984 444433 355689999999998877765
No 42
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.4e-26 Score=217.62 Aligned_cols=267 Identities=10% Similarity=0.080 Sum_probs=203.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|++++| |+|++|++++ .|+.|+|||+.+++.+..+..+. ..+.+++|+||+++++++. ++.|++|++...
T Consensus 21 v~~~~~-~~~~~l~s~~-----~dg~v~vw~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~ 91 (313)
T 3odt_A 21 VRDVVA-VDDSKVASVS-----RDGTVRLWSKDDQWLGTVVYTGQ---GFLNSVCYDSEKELLLFGGKDTMINGVPLFAT 91 (313)
T ss_dssp EEEEEE-EETTEEEEEE-----TTSEEEEEEESSSEEEEEEEECS---SCEEEEEEETTTTEEEEEETTSCEEEEETTCC
T ss_pred cEEEEe-cCCCEEEEEE-----cCCcEEEEECCCCEEEEEeecCC---ccEEEEEECCCCCEEEEecCCCeEEEEEeeec
Confidence 789999 9999999999 89999999999998887776653 6777999999999999884 679999998765
Q ss_pred CC---ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECC-CCCeE
Q 013884 81 PK---GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR-GSTGL 156 (434)
Q Consensus 81 ~~---~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~-~G~~l 156 (434)
.. ......+...|..+.|. +..+++ .+.++.|++|+ . ...+.....+...+..+.|++ +++.+
T Consensus 92 ~~~~~~~~~~~~~~~i~~~~~~---~~~l~~-----~~~d~~i~~~d--~---~~~~~~~~~~~~~v~~~~~~~~~~~~l 158 (313)
T 3odt_A 92 SGEDPLYTLIGHQGNVCSLSFQ---DGVVIS-----GSWDKTAKVWK--E---GSLVYNLQAHNASVWDAKVVSFSENKF 158 (313)
T ss_dssp TTSCC-CEECCCSSCEEEEEEE---TTEEEE-----EETTSEEEEEE--T---TEEEEEEECCSSCEEEEEEEETTTTEE
T ss_pred CCCCcccchhhcccCEEEEEec---CCEEEE-----EeCCCCEEEEc--C---CcEEEecccCCCceeEEEEccCCCCEE
Confidence 32 12233455678888884 334443 24567899999 3 677777888888999999988 77776
Q ss_pred EEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc-
Q 013884 157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL- 234 (434)
Q Consensus 157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~- 234 (434)
++.. .|.....| + .+.....+...+...|.+++|+|++. |+ ++..++.+.+||++ ...+..+
T Consensus 159 ~~~~---~d~~i~i~---------d-~~~~~~~~~~~~~~~i~~~~~~~~~~-~~--~~~~dg~i~i~d~~~~~~~~~~~ 222 (313)
T 3odt_A 159 LTAS---ADKTIKLW---------Q-NDKVIKTFSGIHNDVVRHLAVVDDGH-FI--SCSNDGLIKLVDMHTGDVLRTYE 222 (313)
T ss_dssp EEEE---TTSCEEEE---------E-TTEEEEEECSSCSSCEEEEEEEETTE-EE--EEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEE---CCCCEEEE---------e-cCceEEEEeccCcccEEEEEEcCCCe-EE--EccCCCeEEEEECCchhhhhhhh
Confidence 5432 33333333 2 12212222333578999999999998 54 57789999999996 4455444
Q ss_pred -CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013884 235 -GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKI 311 (434)
Q Consensus 235 -~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~i 311 (434)
|...+++++|+|+| .|++++ .+|.|++||+.+++.+..+..+ .+..++|+|+|+ |++++. |+.|+|
T Consensus 223 ~~~~~i~~~~~~~~~-~l~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~------dg~i~i 291 (313)
T 3odt_A 223 GHESFVYCIKLLPNG-DIVSCG---EDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSS------DNLVRI 291 (313)
T ss_dssp CCSSCEEEEEECTTS-CEEEEE---TTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEET------TSCEEE
T ss_pred cCCceEEEEEEecCC-CEEEEe---cCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeC------CCcEEE
Confidence 78899999999999 577777 5679999999999888888766 566699999999 567888 999999
Q ss_pred EeecCc
Q 013884 312 FHHNGS 317 (434)
Q Consensus 312 w~~~g~ 317 (434)
|++...
T Consensus 292 w~~~~~ 297 (313)
T 3odt_A 292 FSQEKS 297 (313)
T ss_dssp EESCGG
T ss_pred EeCCCC
Confidence 999654
No 43
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.96 E-value=2.1e-27 Score=228.95 Aligned_cols=274 Identities=13% Similarity=0.090 Sum_probs=199.2
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc--EEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~ 78 (434)
|++++|||+|++|++++ .|+.|+|||+.+++ .+..+..+. ..+.+++|+||+++|+++. ++.|++|++.
T Consensus 11 i~~~~~s~~~~~l~~~~-----~d~~v~i~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 11 ISCHAWNKDRTQIAICP-----NNHEVHIYEKSGNKWVQVHELKEHN---GQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp CCEEEECTTSSEEEEEC-----SSSEEEEEEEETTEEEEEEEEECCS---SCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred eEEEEECCCCCEEEEEe-----CCCEEEEEeCCCCcEEeeeeecCCC---CcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 78999999999999988 78999999999987 777776543 6777999999999999885 6799999987
Q ss_pred CCCCceee--eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCc---ee-eeeecccceeEEEECCC
Q 013884 79 DFPKGILY--RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQP---LA-RRSFFRCSTVQLNWNRG 152 (434)
Q Consensus 79 ~~~~~~~~--~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~---i~-~~~~~~~~~~~~~ws~~ 152 (434)
........ ..+...|..+.|+|+ +..+++- +.++.|++|++.. ... .. ....+...+..+.|+|+
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~-----~~d~~v~i~d~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~ 153 (372)
T 1k8k_C 83 GRTWKPTLVILRINRAARCVRWAPN-EKKFAVG-----SGSRVISICYFEQ---ENDWWVCKHIKKPIRSTVLSLDWHPN 153 (372)
T ss_dssp TTEEEEEEECCCCSSCEEEEEECTT-SSEEEEE-----ETTSSEEEEEEET---TTTEEEEEEECTTCCSCEEEEEECTT
T ss_pred CCeeeeeEEeecCCCceeEEEECCC-CCEEEEE-----eCCCEEEEEEecC---CCcceeeeeeecccCCCeeEEEEcCC
Confidence 64321222 224457999999998 4555542 3457899999977 332 12 22345678899999999
Q ss_pred CCeEEEEEEecccccCceeecceeEEEEe----------------eCCCceeeeec-CCCCCeEEEEECcCCCEEEEEEc
Q 013884 153 STGLLAVAQSDVDKTNQSYYGESKLNYLT----------------TDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYG 215 (434)
Q Consensus 153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~----------------~~~~~~~~v~l-~~~~~i~~~~wspdg~~~av~~g 215 (434)
|+.+++.. .|.... +|.+. .... .....+ .+.+.|.+++|+|+++.|+ ++
T Consensus 154 ~~~l~~~~---~dg~i~-------~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~--~~ 220 (372)
T 1k8k_C 154 SVLLAAGS---CDFKCR-------IFSAYIKEVEERPAPTPWGSKMPFG-ELMFESSSSCGWVHGVCFSANGSRVA--WV 220 (372)
T ss_dssp SSEEEEEE---TTSCEE-------EEECCCTTTSCCCCCBTTBSCCCTT-CEEEECCCCSSCEEEEEECSSSSEEE--EE
T ss_pred CCEEEEEc---CCCCEE-------EEEcccccccccccccccccccchh-hheEecCCCCCeEEEEEECCCCCEEE--EE
Confidence 99765532 333333 33321 0111 222223 3578999999999999888 56
Q ss_pred cCCCeEEEEecc-ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC--CEE--E--------------
Q 013884 216 FMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD--GKQ--L-------------- 274 (434)
Q Consensus 216 ~~~~~i~l~d~~-~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~--~~~--i-------------- 274 (434)
..++.+.+||++ ...+..+ +..++++++|+|+|++|+++ .+|.|.+||+.+ ++. +
T Consensus 221 ~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (372)
T 1k8k_C 221 SHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG----HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGL 296 (372)
T ss_dssp ETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE----TTSSCEEEEEETTTTEEEECCCCCCC--------
T ss_pred eCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE----eCCeEEEEEccCcCceEEEeeccCccccchhhhc
Confidence 788999999995 4444444 67789999999999988866 346899999987 421 1
Q ss_pred ----------------------EEe-eCC--CceEEEEC-CCC---CEEEEEEcCCceeeCCcEEEEeec
Q 013884 275 ----------------------GTT-RAE--CSVTSEWS-PDG---RYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 275 ----------------------~~~-~~~--~~~~~~ws-pdg---~~l~tas~~~rl~~D~~i~iw~~~ 315 (434)
..+ .+| .+..++|+ ++| .+|++++. |+.|+||++.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~------Dg~i~~W~~~ 360 (372)
T 1k8k_C 297 TARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGM------DGGMSIWDVR 360 (372)
T ss_dssp CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEET------TSEEEEEEHH
T ss_pred chhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecC------CCceEEEEec
Confidence 112 233 55668866 777 99999999 9999999984
No 44
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.96 E-value=4.8e-27 Score=231.17 Aligned_cols=263 Identities=11% Similarity=0.116 Sum_probs=205.9
Q ss_pred CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884 48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
|...+.+++|+|++.+|++++ |++|+|||............|...|.+++|+|+ +..++. ++.++.|++|++.
T Consensus 107 h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~-~~~l~s-----gs~D~~i~iwd~~ 180 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS-GKLLAS-----CSADMTIKLWDFQ 180 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTT-SSEEEE-----EETTSCCCEEETT
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCC-CCEEEE-----EeCCCeEEEEeCC
Confidence 346778999999999999985 679999999887655556667788999999998 455553 3566789999998
Q ss_pred CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcC
Q 013884 127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS 206 (434)
Q Consensus 127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspd 206 (434)
. ...+.....|...+.++.|+|+|+.|+.. ..|.+.+.| ++........-..+...|..++|+|+
T Consensus 181 ~---~~~~~~~~~h~~~V~~v~~~p~~~~l~s~---s~D~~i~~w---------d~~~~~~~~~~~~h~~~v~~~~~~~~ 245 (410)
T 1vyh_C 181 G---FECIRTMHGHDHNVSSVSIMPNGDHIVSA---SRDKTIKMW---------EVQTGYCVKTFTGHREWVRMVRPNQD 245 (410)
T ss_dssp S---SCEEECCCCCSSCEEEEEECSSSSEEEEE---ETTSEEEEE---------ETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred C---CceeEEEcCCCCCEEEEEEeCCCCEEEEE---eCCCeEEEE---------ECCCCcEEEEEeCCCccEEEEEECCC
Confidence 7 67778888888899999999999986543 245554433 22222111111235678999999999
Q ss_pred CCEEEEEEccCCCeEEEEeccce-eEEEc--CCcCeeEEEECCC--------------------CCeEEEEecCCCCCeE
Q 013884 207 GSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPK--------------------GKFLCLAGFGNLPGDM 263 (434)
Q Consensus 207 g~~~av~~g~~~~~i~l~d~~~~-~~~~~--~~~~~~~i~~sP~--------------------g~~l~~~~~~~~~g~i 263 (434)
|+.|+ +++.|+.|++||++.. ....+ |...++++.|+|+ |.+|++++ .+|.|
T Consensus 246 g~~l~--s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs---~D~~i 320 (410)
T 1vyh_C 246 GTLIA--SCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS---RDKTI 320 (410)
T ss_dssp SSEEE--EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE---TTSEE
T ss_pred CCEEE--EEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe---CCCeE
Confidence 99888 5778999999999643 33344 7889999999997 67899998 55799
Q ss_pred EEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee--ecccceeeEEEcCCCC
Q 013884 264 AFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK--MFDKLFQAEWKPVSPD 338 (434)
Q Consensus 264 ~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~~--~~~~~~~~~w~p~~~~ 338 (434)
++||+.+++++..+.+| .+..++|+|+|++|++++. |+.|+|||+. ++++... +...+..+.|+|..+.
T Consensus 321 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~------D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 394 (410)
T 1vyh_C 321 KMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD------DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY 394 (410)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEET------TTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSC
T ss_pred EEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCE
Confidence 99999999999888877 4567999999999999999 9999999994 4444443 4567999999999887
Q ss_pred CCCC
Q 013884 339 KFGD 342 (434)
Q Consensus 339 ~~~~ 342 (434)
+++.
T Consensus 395 l~sg 398 (410)
T 1vyh_C 395 VVTG 398 (410)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7765
No 45
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.96 E-value=2.2e-27 Score=228.05 Aligned_cols=276 Identities=12% Similarity=0.137 Sum_probs=187.3
Q ss_pred cEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCC---------CC--CceeeeeecCCeeE
Q 013884 27 NVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD---------FP--KGILYRLRVPGVAA 95 (434)
Q Consensus 27 ~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~---------~~--~~~~~~~~~~~v~~ 95 (434)
..+.|++...... . +...+.+++|||||++|++++++++++||... .. .......+..+|.+
T Consensus 15 ~~r~w~~~~~~~~----~---~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 87 (344)
T 4gqb_B 15 AAREWNLPPNAPA----C---MERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVAD 87 (344)
T ss_dssp --------CCSCS----S---CCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEE
T ss_pred cccccCCCCCCcc----c---ccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEE
Confidence 4567876544321 1 12345689999999999999887887776311 00 01112223457999
Q ss_pred EEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee----eeecccceeEEEECCCCCeEEEEEEecccccCcee
Q 013884 96 FEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR----RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSY 171 (434)
Q Consensus 96 ~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~----~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~ 171 (434)
++|+|+ +. ++. .+.++.|+||++.+ ++.+.. ...|...+.++.|+|+|+.|+.. ..|.+.+.|
T Consensus 88 ~~~s~d-~~-l~~-----~s~dg~v~lWd~~~---~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sg---s~d~~i~iw 154 (344)
T 4gqb_B 88 LTWVGE-RG-ILV-----ASDSGAVELWELDE---NETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSG---SKDICIKVW 154 (344)
T ss_dssp EEEETT-TE-EEE-----EETTSEEEEEEECT---TSSCEEEEEEEECCSSCEEEEEECTTSSEEEEE---ETTSCEEEE
T ss_pred EEEeCC-Ce-EEE-----EECCCEEEEEeccC---CCceeEeeccccCCCCCEEEEEECCCCCEEEEE---eCCCeEEEE
Confidence 999997 33 332 24567999999987 444433 23577889999999999986543 345554433
Q ss_pred ecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEEEc----CCcCeeEEEECC
Q 013884 172 YGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL----GSGPYNTVRWNP 246 (434)
Q Consensus 172 ~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~~----~~~~~~~i~~sP 246 (434)
++...........+.+.|.+++|+|++..+++ +++.|+.|++||++. +.+..+ +...+++++|+|
T Consensus 155 ---------d~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p 224 (344)
T 4gqb_B 155 ---------DLAQQVVLSSYRAHAAQVTCVAASPHKDSVFL-SCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHP 224 (344)
T ss_dssp ---------ETTTTEEEEEECCCSSCEEEEEECSSCTTEEE-EEETTSCEEEEETTSSSCEEECC----CCCEEEEEECS
T ss_pred ---------ECCCCcEEEEEcCcCCceEEEEecCCCCCcee-eeccccccccccccccceeeeeecceeeccceeeeecC
Confidence 33333222222235789999999999975443 678899999999964 444444 345688999999
Q ss_pred CC-CeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCC-CEEEEEEcCCceeeCCcEEEEeecCceeeee
Q 013884 247 KG-KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDG-RYFMTATTAPRLQIDNGIKIFHHNGSLFFKK 322 (434)
Q Consensus 247 ~g-~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg-~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~ 322 (434)
++ ++|++|+ .+|.|+|||+++++++..+.+| .+..++|+||| ++|++++. |+.|+|||+....+...
T Consensus 225 ~~~~~l~sg~---~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~------D~~i~vwd~~~~~~~~~ 295 (344)
T 4gqb_B 225 QQSEVFVFGD---ENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSE------DCSLAVLDSSLSELFRS 295 (344)
T ss_dssp SCTTEEEEEE---TTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEET------TSCEEEECTTCCEEEEE
T ss_pred CCCcceEEec---cCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeC------CCeEEEEECCCCcEEEE
Confidence 65 5777777 5679999999999988888877 56679999998 57889998 99999999966544433
Q ss_pred --ecccceeeEEEcCCCCCCC
Q 013884 323 --MFDKLFQAEWKPVSPDKFG 341 (434)
Q Consensus 323 --~~~~~~~~~w~p~~~~~~~ 341 (434)
+.+.+..+.|+|++..++.
T Consensus 296 ~~H~~~V~~v~~sp~~~~lla 316 (344)
T 4gqb_B 296 QAHRDFVRDATWSPLNHSLLT 316 (344)
T ss_dssp CCCSSCEEEEEECSSSTTEEE
T ss_pred cCCCCCEEEEEEeCCCCeEEE
Confidence 5568999999999988764
No 46
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.96 E-value=1.7e-27 Score=228.63 Aligned_cols=276 Identities=10% Similarity=0.087 Sum_probs=199.6
Q ss_pred cceEEecCC---Cc-EEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecC--cCCCCCCeeeecCC----CcEEEEe-cCC
Q 013884 2 LLLLTCLRV---GL-IIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKN--MTKTTWPSIRFSSD----EAVACRM-ATN 70 (434)
Q Consensus 2 V~~l~fSP~---g~-~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~--~~~~~~~~~~~S~d----~~~la~~-~~~ 70 (434)
|++|+|||+ +. ++++.. .++.|+|||+.+++.+..+.... .+...+.+++|+|+ +.+|+++ .++
T Consensus 21 v~~i~~~p~~~~~~~~~~~~~-----~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg 95 (366)
T 3k26_A 21 LFGVQFNWHSKEGDPLVFATV-----GSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG 95 (366)
T ss_dssp EEEEEECTTCCTTSCEEEEEE-----ETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTC
T ss_pred eEEEEEecccCCCCceEEEEC-----CCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCC
Confidence 789999994 33 344443 36699999999888776665432 13356779999999 6688887 567
Q ss_pred eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee---eecccceeEE
Q 013884 71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR---SFFRCSTVQL 147 (434)
Q Consensus 71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~---~~~~~~~~~~ 147 (434)
.|++||+...........+...|..+.|+|..+..+++ .+.++.|++|++.. .+.+... ..+...+..+
T Consensus 96 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s-----~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~ 167 (366)
T 3k26_A 96 IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLS-----VSKDHALRLWNIQT---DTLVAIFGGVEGHRDEVLSA 167 (366)
T ss_dssp EEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEE-----EETTSCEEEEETTT---TEEEEEECSTTSCSSCEEEE
T ss_pred EEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEE-----EeCCCeEEEEEeec---CeEEEEecccccccCceeEE
Confidence 99999998766444444566789999999943566654 24467899999987 5666655 5688899999
Q ss_pred EECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCcee----------------------------eeecCCCCCeE
Q 013884 148 NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG----------------------------LVPLRKEGPVH 199 (434)
Q Consensus 148 ~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~----------------------------~v~l~~~~~i~ 199 (434)
.|+|+|..|+... .|.....| +....... .....+...|.
T Consensus 168 ~~~~~~~~l~~~~---~dg~i~i~---------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 235 (366)
T 3k26_A 168 DYDLLGEKIMSCG---MDHSLKLW---------RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVD 235 (366)
T ss_dssp EECTTSSEEEEEE---TTSCEEEE---------ESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCC
T ss_pred EECCCCCEEEEec---CCCCEEEE---------ECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEE
Confidence 9999999875532 34333322 22211000 00011578899
Q ss_pred EEEECcCCCEEEEEEccCCCeEEEEeccce---------------eEEE--cCCcCeeEEEECCC--CCeEEEEecCCCC
Q 013884 200 DVQWSYSGSEFAVVYGFMPASATIFNKKCR---------------PILE--LGSGPYNTVRWNPK--GKFLCLAGFGNLP 260 (434)
Q Consensus 200 ~~~wspdg~~~av~~g~~~~~i~l~d~~~~---------------~~~~--~~~~~~~~i~~sP~--g~~l~~~~~~~~~ 260 (434)
+++|+ ++.++ ++..++.+.+||++.. .+.. .+...+++++|+|+ |++|++++ .+
T Consensus 236 ~~~~~--~~~l~--~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~---~d 308 (366)
T 3k26_A 236 CVRWL--GDLIL--SKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGN---QV 308 (366)
T ss_dssp EEEEE--TTEEE--EECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEEC---TT
T ss_pred EEEEc--CCEEE--EEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEe---cC
Confidence 99998 66666 5778999999997531 1333 36778999999999 99999998 56
Q ss_pred CeEEEEEccCCE----EEEEeeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884 261 GDMAFWDYVDGK----QLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 261 g~i~iwd~~~~~----~i~~~~~~----~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~ 315 (434)
|.|++||+.+++ .+..+..+ .+..++|+|||++|++++. |+.|+|||+.
T Consensus 309 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~i~iwd~~ 365 (366)
T 3k26_A 309 GKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCD------DASIWRWDRL 365 (366)
T ss_dssp SCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEET------TSEEEEEEC-
T ss_pred CcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeC------CCEEEEEEec
Confidence 799999999864 44455543 5667999999999999999 9999999974
No 47
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.96 E-value=7.5e-26 Score=218.23 Aligned_cols=274 Identities=12% Similarity=0.145 Sum_probs=204.9
Q ss_pred cEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCC
Q 013884 37 EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKG 115 (434)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~ 115 (434)
+..+.+.++. ..+.+++|+||+++|++++ |++|+|||............+...|..++|+|+ +..+++ ++
T Consensus 55 ~~~~~l~gH~---~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~-g~~las-----g~ 125 (354)
T 2pbi_B 55 KTRRTLKGHG---NKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS-GCAIAC-----GG 125 (354)
T ss_dssp CEEEEEECCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTT-SSEEEE-----ES
T ss_pred EEEEEecCCC---CeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCC-CCEEEE-----ee
Confidence 4456666543 6777999999999999985 679999998876554445556667999999999 455553 46
Q ss_pred CCceEEEEEcCCCCC---CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec
Q 013884 116 SPASVQIYACGKDLQ---SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL 192 (434)
Q Consensus 116 ~~~~v~i~~~~~~~~---~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l 192 (434)
.++.+++|++..... .........|...+..+.|+|++..|+.. ..|.+.+.| ++........-.
T Consensus 126 ~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~---s~D~~v~lw---------d~~~~~~~~~~~ 193 (354)
T 2pbi_B 126 LDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTA---SGDGTCALW---------DVESGQLLQSFH 193 (354)
T ss_dssp TTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEE---ETTSEEEEE---------ETTTCCEEEEEE
T ss_pred CCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEE---eCCCcEEEE---------eCCCCeEEEEEc
Confidence 778999999864210 23345566788888999999999986543 244444433 332221111112
Q ss_pred CCCCCeEEEEECc--CCCEEEEEEccCCCeEEEEeccc-eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEE
Q 013884 193 RKEGPVHDVQWSY--SGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD 267 (434)
Q Consensus 193 ~~~~~i~~~~wsp--dg~~~av~~g~~~~~i~l~d~~~-~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd 267 (434)
.+...|.+++|+| +|+.|+ +|..|+.|++||++. ..+..+ |...+++++|+|+|++|++++ .+|.|++||
T Consensus 194 ~h~~~v~~~~~~~~~~g~~l~--sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s---~D~~v~lwd 268 (354)
T 2pbi_B 194 GHGADVLCLDLAPSETGNTFV--SGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGS---DDATCRLYD 268 (354)
T ss_dssp CCSSCEEEEEECCCSSCCEEE--EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSCEEEEE
T ss_pred CCCCCeEEEEEEeCCCCCEEE--EEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEe---CCCeEEEEE
Confidence 3577899999988 466777 688899999999964 444444 788999999999999999999 567999999
Q ss_pred ccCCEEEEEeeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee--ecccceeeEEEcCCCCCC
Q 013884 268 YVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK--MFDKLFQAEWKPVSPDKF 340 (434)
Q Consensus 268 ~~~~~~i~~~~~~----~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~--~~~~~~~~~w~p~~~~~~ 340 (434)
+.+.+.+..+..+ .+..++|+|+|++|++++. |+.|+|||+ +|+.+... +...+..+.|+|++..++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~------d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~ 342 (354)
T 2pbi_B 269 LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYN------DYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFC 342 (354)
T ss_dssp TTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET------TSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred CCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEEC------CCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEE
Confidence 9998877766543 4566999999999999999 999999998 56655443 557899999999988777
Q ss_pred CC
Q 013884 341 GD 342 (434)
Q Consensus 341 ~~ 342 (434)
+.
T Consensus 343 sg 344 (354)
T 2pbi_B 343 SG 344 (354)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 48
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.96 E-value=2.6e-27 Score=230.69 Aligned_cols=290 Identities=12% Similarity=0.154 Sum_probs=214.0
Q ss_pred CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCC
Q 013884 26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGS 104 (434)
Q Consensus 26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 104 (434)
..+.+|+..+..+.+++.++. ..+.+++|+||+++|++++ |++|+|||............+...|.+++|+|+ +.
T Consensus 46 ~~~~~~~~~~~~~~~~l~gH~---~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~-g~ 121 (380)
T 3iz6_a 46 RTAVSFNPTDLVCCRTLQGHS---GKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN-GQ 121 (380)
T ss_dssp GGCCCCCCCCCEEEEEECCCS---SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTT-SS
T ss_pred ccccccccceeEEeecccccc---cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCC-CC
Confidence 445667777778888887654 6788999999999999985 679999999876655555667778999999999 55
Q ss_pred eEEEEecCCCCCCceEEEEEcCCCC----CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeeccee--EE
Q 013884 105 HVAVFVPESKGSPASVQIYACGKDL----QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESK--LN 178 (434)
Q Consensus 105 ~ia~~~~~~~~~~~~v~i~~~~~~~----~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~--l~ 178 (434)
.+++ ++.++.+++|++.... ..........|...+..+.|+|++...++. ...|.+.+.|.-... +.
T Consensus 122 ~las-----~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s--~s~D~~i~~wd~~~~~~~~ 194 (380)
T 3iz6_a 122 SVAC-----GGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLIT--GSGDQTCVLWDVTTGQRIS 194 (380)
T ss_dssp EEEE-----CCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEE--ECTTSCEEEECTTTCCEEE
T ss_pred EEEE-----eeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEE--ECCCCcEEEEEcCCCcEEE
Confidence 5553 5678899999986521 012334456677788889999986654433 335555554432111 00
Q ss_pred EEeeCCCceeeeecCCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEecc--ceeEEEc--CCcCeeEEEECCCCCeEEE
Q 013884 179 YLTTDGTHEGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKK--CRPILEL--GSGPYNTVRWNPKGKFLCL 253 (434)
Q Consensus 179 ~l~~~~~~~~~v~l~~~~~i~~~~wsp-dg~~~av~~g~~~~~i~l~d~~--~~~~~~~--~~~~~~~i~~sP~g~~l~~ 253 (434)
.+ + ...+..+...|.+++|+| +++.|+ +|+.|+.|++||++ ...+..+ |.+.+++++|+|+|++|++
T Consensus 195 ~~---~---~~~~~~h~~~v~~~~~~~~~~~~l~--sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s 266 (380)
T 3iz6_a 195 IF---G---SEFPSGHTADVLSLSINSLNANMFI--SGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGT 266 (380)
T ss_dssp EE---C---CCSSSSCCSCEEEEEECSSSCCEEE--EEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEE
T ss_pred Ee---e---cccCCCCccCeEEEEeecCCCCEEE--EEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEE
Confidence 00 0 001123567899999987 777777 68889999999986 2444444 7889999999999999999
Q ss_pred EecCCCCCeEEEEEccCCEEEEEeeCC---------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee-
Q 013884 254 AGFGNLPGDMAFWDYVDGKQLGTTRAE---------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK- 322 (434)
Q Consensus 254 ~~~~~~~g~i~iwd~~~~~~i~~~~~~---------~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~- 322 (434)
++ .+|+|++||+.+++.+..+..+ .+..++|+|+|++|++++. |+.|+|||. .++.+...
T Consensus 267 ~s---~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~------dg~i~vwd~~~~~~~~~~~ 337 (380)
T 3iz6_a 267 GS---DDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS------NGDCYVWDTLLAEMVLNLG 337 (380)
T ss_dssp EC---SSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT------TSCEEEEETTTCCEEEEEC
T ss_pred Ec---CCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEEC------CCCEEEEECCCCceEEEEe
Confidence 98 5679999999999888776543 2567999999999999999 999999998 44444332
Q ss_pred -----ecccceeeEEEcCCCCCCCCc
Q 013884 323 -----MFDKLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 323 -----~~~~~~~~~w~p~~~~~~~~~ 343 (434)
+...+.++.|+|++..+++..
T Consensus 338 ~~~~~h~~~v~~l~~s~dg~~l~sgs 363 (380)
T 3iz6_a 338 TLQNSHEGRISCLGLSSDGSALCTGS 363 (380)
T ss_dssp CSCSSCCCCCCEEEECSSSSEEEEEC
T ss_pred cccCCCCCceEEEEECCCCCEEEEee
Confidence 446799999999998887763
No 49
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.5e-27 Score=252.35 Aligned_cols=316 Identities=11% Similarity=0.097 Sum_probs=205.0
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|++|+||| |++|++++ .|+.|+|||+.+++++..+... ..+.++.|+||+++|+++. +++|++||+...
T Consensus 61 V~~l~fsp-g~~L~S~s-----~D~~v~lWd~~~~~~~~~~~~~----~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~ 130 (902)
T 2oaj_A 61 IKEMRFVK-GIYLVVIN-----AKDTVYVLSLYSQKVLTTVFVP----GKITSIDTDASLDWMLIGLQNGSMIVYDIDRD 130 (902)
T ss_dssp EEEEEEET-TTEEEEEE-----TTCEEEEEETTTCSEEEEEECS----SCEEEEECCTTCSEEEEEETTSCEEEEETTTT
T ss_pred EEEEEEcC-CCEEEEEE-----CcCeEEEEECCCCcEEEEEcCC----CCEEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence 78999999 99999999 8999999999999999888633 5567999999999999984 679999998764
Q ss_pred CCce-----------eeeeecCCeeEEEEeCCCCC---------eE----------------------------------
Q 013884 81 PKGI-----------LYRLRVPGVAAFEVSKAPGS---------HV---------------------------------- 106 (434)
Q Consensus 81 ~~~~-----------~~~~~~~~v~~~~~sp~~~~---------~i---------------------------------- 106 (434)
.... ....|...|.+++|+|++.. .+
T Consensus 131 ~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~vlWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h 210 (902)
T 2oaj_A 131 QLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKR 210 (902)
T ss_dssp EEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEEEEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCB
T ss_pred ccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcEEEECCCCceEEEEecccCCcCCCccccccccccc
Confidence 3210 00112234555555553110 00
Q ss_pred ------EEEecC-----CCCCCceEEEEEcCCCCCCCceeeeee------------------cccceeEEEEC----CCC
Q 013884 107 ------AVFVPE-----SKGSPASVQIYACGKDLQSQPLARRSF------------------FRCSTVQLNWN----RGS 153 (434)
Q Consensus 107 ------a~~~~~-----~~~~~~~v~i~~~~~~~~~~~i~~~~~------------------~~~~~~~~~ws----~~G 153 (434)
..|.|+ +.+.++.|++|++.+ ++.+..+++ +...+..+.|+ |++
T Consensus 211 ~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~---g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~ 287 (902)
T 2oaj_A 211 TPKVIQSLYHPNSLHIITIHEDNSLVFWDANS---GHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEY 287 (902)
T ss_dssp CCCEEEEEECTTSSEEEEEETTCCEEEEETTT---CCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTE
T ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCC---CcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCC
Confidence 111111 124567899999977 555543322 13357889994 555
Q ss_pred CeEEEEEEeccc---ccCceee-c--------------------------------------------------------
Q 013884 154 TGLLAVAQSDVD---KTNQSYY-G-------------------------------------------------------- 173 (434)
Q Consensus 154 ~~l~~~~~~~~d---~~~~~~~-g-------------------------------------------------------- 173 (434)
..+++..+.+.+ .....+. +
T Consensus 288 ~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l 367 (902)
T 2oaj_A 288 TSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLI 367 (902)
T ss_dssp EEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEE
T ss_pred CEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeE
Confidence 455444322110 0111111 0
Q ss_pred -----ceeEEEEeeCCCceeee----------------------------------------ec-CCCCCeEEEEECcCC
Q 013884 174 -----ESKLNYLTTDGTHEGLV----------------------------------------PL-RKEGPVHDVQWSYSG 207 (434)
Q Consensus 174 -----~~~l~~l~~~~~~~~~v----------------------------------------~l-~~~~~i~~~~wspdg 207 (434)
...|+.+++..+..... ++ .+...+..++|+|+|
T Consensus 368 ~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg 447 (902)
T 2oaj_A 368 LLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYG 447 (902)
T ss_dssp EEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEE
T ss_pred EEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccC
Confidence 01122332211100000 00 011223345668888
Q ss_pred CEEEEEEccCCCeEEEEeccceeE-----EE---------cCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--
Q 013884 208 SEFAVVYGFMPASATIFNKKCRPI-----LE---------LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-- 271 (434)
Q Consensus 208 ~~~av~~g~~~~~i~l~d~~~~~~-----~~---------~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~-- 271 (434)
+.++ +|+.|++|++||+....+ .. .|...+++++|||||++||+|+ .+|+|+|||+.++
T Consensus 448 ~~la--Sgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs---~DgtV~lwd~~~~~~ 522 (902)
T 2oaj_A 448 TAFI--TGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSI---ETGDVVLFKYEVNQF 522 (902)
T ss_dssp EEEE--EEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEE---TTSCEEEEEEEECCC
T ss_pred cEEE--EecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEe---cCcEEEEEEecCccc
Confidence 8887 688899999999864322 11 3567899999999999999999 6679999998765
Q ss_pred -------------------------------------------EEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeC
Q 013884 272 -------------------------------------------KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQID 306 (434)
Q Consensus 272 -------------------------------------------~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D 306 (434)
+++..+.+| .++.++||||| +||+|+. |
T Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~------D 595 (902)
T 2oaj_A 523 YSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYA------A 595 (902)
T ss_dssp ---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEET------T
T ss_pred cCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeC------C
Confidence 235666655 66779999999 9999999 9
Q ss_pred CcEEEEeecCcee-ee--------eecccceeeEEE-----cCC---CCCCCC
Q 013884 307 NGIKIFHHNGSLF-FK--------KMFDKLFQAEWK-----PVS---PDKFGD 342 (434)
Q Consensus 307 ~~i~iw~~~g~~~-~~--------~~~~~~~~~~w~-----p~~---~~~~~~ 342 (434)
+.|+|||+.+..+ +. .+...+..++|+ |++ ..|++.
T Consensus 596 ~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sg 648 (902)
T 2oaj_A 596 GSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCG 648 (902)
T ss_dssp SEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEE
T ss_pred CcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEE
Confidence 9999999987643 21 233459999999 875 455544
No 50
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.96 E-value=2.5e-26 Score=223.88 Aligned_cols=281 Identities=11% Similarity=0.090 Sum_probs=199.0
Q ss_pred cceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeec----------CcCCCCCCeeeecC-CCcEEEEec-
Q 013884 2 LLLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQK----------NMTKTTWPSIRFSS-DEAVACRMA- 68 (434)
Q Consensus 2 V~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~----------~~~~~~~~~~~~S~-d~~~la~~~- 68 (434)
|.+|+||| +|++|++++ .|+.|+|||+.+++....+... ..|...+.+++|+| ++.+|+++.
T Consensus 46 v~~~~~s~~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 120 (408)
T 4a11_B 46 INTLDIEPVEGRYMLSGG-----SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF 120 (408)
T ss_dssp EEEEEECTTTCCEEEEEE-----TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET
T ss_pred EEEEEEecCCCCEEEEEc-----CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeC
Confidence 78999999 999999999 8999999999988654443311 11446778999999 777888875
Q ss_pred CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCC--CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeE
Q 013884 69 TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPG--SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQ 146 (434)
Q Consensus 69 ~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~ 146 (434)
++.|++||+......... .....+..+.++|... ..+++- +..+.|++|++.. ...+.....+...+..
T Consensus 121 d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~d~~~---~~~~~~~~~~~~~v~~ 191 (408)
T 4a11_B 121 DKTLKVWDTNTLQTADVF-NFEETVYSHHMSPVSTKHCLVAVG-----TRGPKVQLCDLKS---GSCSHILQGHRQEILA 191 (408)
T ss_dssp TSEEEEEETTTTEEEEEE-ECSSCEEEEEECSSCSSCCEEEEE-----ESSSSEEEEESSS---SCCCEEECCCCSCEEE
T ss_pred CCeEEEeeCCCCccceec-cCCCceeeeEeecCCCCCcEEEEE-----cCCCeEEEEeCCC---cceeeeecCCCCcEEE
Confidence 789999999875432222 2345688899998643 244432 3456899999987 6777778888889999
Q ss_pred EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeee----------------cCCCCCeEEEEECcCCCEE
Q 013884 147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP----------------LRKEGPVHDVQWSYSGSEF 210 (434)
Q Consensus 147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~----------------l~~~~~i~~~~wspdg~~~ 210 (434)
+.|+|+|.++++.++ .|...+.| ++......... ..+.+.|.+++|+|+++.|
T Consensus 192 ~~~~~~~~~ll~~~~--~dg~i~i~---------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 260 (408)
T 4a11_B 192 VSWSPRYDYILATAS--ADSRVKLW---------DVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHL 260 (408)
T ss_dssp EEECSSCTTEEEEEE--TTSCEEEE---------ETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEE
T ss_pred EEECCCCCcEEEEEc--CCCcEEEE---------ECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEE
Confidence 999999997655433 33333322 22111111111 2346889999999999998
Q ss_pred EEEEccCCCeEEEEecccee-EEEc-------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--
Q 013884 211 AVVYGFMPASATIFNKKCRP-ILEL-------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-- 280 (434)
Q Consensus 211 av~~g~~~~~i~l~d~~~~~-~~~~-------~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-- 280 (434)
+ ++..++.+.+||++... ...+ .............+..+++++ .+|.|.+||+.+++.+..+.+|
T Consensus 261 ~--~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~ 335 (408)
T 4a11_B 261 L--TVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVP---YGSTIAVYTVYSGEQITMLKGHYK 335 (408)
T ss_dssp E--EEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEE---ETTEEEEEETTTCCEEEEECCCSS
T ss_pred E--EecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEe---cCCEEEEEECcCCcceeeeccCCC
Confidence 8 46778999999986432 2211 111222223333445555565 3469999999999999998876
Q ss_pred CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013884 281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 318 (434)
Q Consensus 281 ~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~ 318 (434)
.+..++|+|||++|++++. |+.|+||++....
T Consensus 336 ~v~~~~~s~~~~~l~s~~~------dg~i~iw~~~~~~ 367 (408)
T 4a11_B 336 TVDCCVFQSNFQELYSGSR------DCNILAWVPSLYE 367 (408)
T ss_dssp CEEEEEEETTTTEEEEEET------TSCEEEEEECC--
T ss_pred eEEEEEEcCCCCEEEEECC------CCeEEEEeCCCCC
Confidence 5666999999999999999 9999999996543
No 51
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.96 E-value=6.3e-27 Score=260.80 Aligned_cols=314 Identities=11% Similarity=0.101 Sum_probs=231.5
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc----------CCCCCCeeeecCCCcEEEEecCCe
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM----------TKTTWPSIRFSSDEAVACRMATNE 71 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~----------~~~~~~~~~~S~d~~~la~~~~~~ 71 (434)
|++++|||+|++|++++ .|+.|++||+.+++.+..+..... ....+.++.|+|||++++.+.++.
T Consensus 746 v~~~~~sp~~~~l~s~s-----~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~ 820 (1249)
T 3sfz_A 746 VNHCRFSPDDELLASCS-----ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK 820 (1249)
T ss_dssp EEEEEECSSTTEEEEEE-----SSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTE
T ss_pred EEEEEEecCCCEEEEEE-----CCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCc
Confidence 67999999999999999 899999999999988777653221 112566899999999999999999
Q ss_pred EEEEeCCCCCCceeee-eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013884 72 IQFFDTTDFPKGILYR-LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN 150 (434)
Q Consensus 72 i~v~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws 150 (434)
|.+|+........... .+...|..+.|+|+ +..+++ .+.++.|++|++.. ...+.....|...+..+.|+
T Consensus 821 v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~-----~~~dg~v~vwd~~~---~~~~~~~~~h~~~v~~v~~s 891 (1249)
T 3sfz_A 821 VLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY-DHLAVI-----ALSQYCVELWNIDS---RLKVADCRGHLSWVHGVMFS 891 (1249)
T ss_dssp EEEEETTTCCEEEEEECSSSSCCCEEEECSS-TTEEEE-----ECSSSCEEEEETTT---TEEEEEECCCSSCEEEEEEC
T ss_pred EEEEEecCCCceeEEcCCCCCceEEEEEcCC-CCEEEE-----EeCCCeEEEEEcCC---CceeeecCCCccceEEEEEC
Confidence 9999998765432222 34567999999998 455543 24567899999988 77888888899999999999
Q ss_pred CCCCeEEEEEEecccccCceeecc--------------------------------------------------------
Q 013884 151 RGSTGLLAVAQSDVDKTNQSYYGE-------------------------------------------------------- 174 (434)
Q Consensus 151 ~~G~~l~~~~~~~~d~~~~~~~g~-------------------------------------------------------- 174 (434)
|+|..++... .|...+.|.-.
T Consensus 892 pdg~~l~s~s---~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 968 (1249)
T 3sfz_A 892 PDGSSFLTAS---DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCC 968 (1249)
T ss_dssp TTSSEEEEEE---TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEE
T ss_pred CCCCEEEEEe---CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEE
Confidence 9999865432 34444333210
Q ss_pred --------------eeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee----------
Q 013884 175 --------------SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP---------- 230 (434)
Q Consensus 175 --------------~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~---------- 230 (434)
..++.++............+.+.|.+++|+|+|+.++ +++.++.+.+||+....
T Consensus 969 ~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~--s~~~dg~i~vwd~~~~~~~~~~~~~~~ 1046 (1249)
T 3sfz_A 969 LSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLI--SSSEDSVIQVWNWQTGDYVFLQAHQET 1046 (1249)
T ss_dssp ECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEE--EECSSSBEEEEETTTTEEECCBCCSSC
T ss_pred EcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEE--EEcCCCEEEEEECCCCceEEEecCCCc
Confidence 0111222211111111123567888999999999888 46677788888753211
Q ss_pred -------------------------------EE--EcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013884 231 -------------------------------IL--ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT 277 (434)
Q Consensus 231 -------------------------------~~--~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~ 277 (434)
+. ..|.+.+.+++|+|+|++|++++ .+|.|++||+.+++.+..+
T Consensus 1047 v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s---~d~~v~iwd~~~~~~~~~l 1123 (1249)
T 3sfz_A 1047 VKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTS---ADKTAKIWSFDLLSPLHEL 1123 (1249)
T ss_dssp EEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEEC---CSSCCCEECSSSSSCSBCC
T ss_pred EEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEc---CCCcEEEEECCCcceeeee
Confidence 11 12566788999999999999998 5679999999998877777
Q ss_pred eCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee-----------ecccceeeEEEcCCCCCCCCc
Q 013884 278 RAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK-----------MFDKLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 278 ~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~~-----------~~~~~~~~~w~p~~~~~~~~~ 343 (434)
.+| .+..++|||||++|++++. |+.|+|||+. |+.+... +...+..+.|+|++..++...
T Consensus 1124 ~~h~~~v~~~~~s~dg~~lat~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~ 1197 (1249)
T 3sfz_A 1124 KGHNGCVRCSAFSLDGILLATGDD------NGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG 1197 (1249)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEET------TSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES
T ss_pred ccCCCcEEEEEECCCCCEEEEEeC------CCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC
Confidence 766 5667999999999999999 9999999995 5544332 445689999999998887653
No 52
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.96 E-value=1.9e-26 Score=221.55 Aligned_cols=275 Identities=13% Similarity=0.117 Sum_probs=194.8
Q ss_pred cEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceee---eeecCCeeEEEEeCCCCCeEEEEecC
Q 013884 37 EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILY---RLRVPGVAAFEVSKAPGSHVAVFVPE 112 (434)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~~ia~~~~~ 112 (434)
+++.++..+. ...+.+++|+|||++||+++ |++|+||++......... ..|...|..++|+|+ +.+++.
T Consensus 6 ~~~~~~~~h~--~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-g~~l~s---- 78 (345)
T 3fm0_A 6 VLLGRVPAHP--DSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC-GNYLAS---- 78 (345)
T ss_dssp EEEEEECCST--TSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTT-SSEEEE----
T ss_pred EEeeeecCCC--CCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCC-CCEEEE----
Confidence 4556665543 12555899999999999985 679999998764321111 235567999999998 455553
Q ss_pred CCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeee-
Q 013884 113 SKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP- 191 (434)
Q Consensus 113 ~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~- 191 (434)
.+.++.++||++.... ...+.....|...+..+.|+|+|+.|+.. ..|.+.+ +|.+...........
T Consensus 79 -~s~D~~v~iw~~~~~~-~~~~~~~~~h~~~v~~v~~sp~~~~l~s~---s~D~~v~-------iwd~~~~~~~~~~~~~ 146 (345)
T 3fm0_A 79 -ASFDATTCIWKKNQDD-FECVTTLEGHENEVKSVAWAPSGNLLATC---SRDKSVW-------VWEVDEEDEYECVSVL 146 (345)
T ss_dssp -EETTSCEEEEEECCC--EEEEEEECCCSSCEEEEEECTTSSEEEEE---ETTSCEE-------EEEECTTSCEEEEEEE
T ss_pred -EECCCcEEEEEccCCC-eEEEEEccCCCCCceEEEEeCCCCEEEEE---ECCCeEE-------EEECCCCCCeEEEEEe
Confidence 3456789999987621 23456667788899999999999986543 2454444 333322222122222
Q ss_pred cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce---eEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEE
Q 013884 192 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR---PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW 266 (434)
Q Consensus 192 l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~---~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iw 266 (434)
..+...|.+++|+|+++.|+ ++..|+.|++||.+.. ....+ |...+++++|+|+|++|++++ .+|.|+||
T Consensus 147 ~~h~~~v~~~~~~p~~~~l~--s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s---~D~~v~iW 221 (345)
T 3fm0_A 147 NSHTQDVKHVVWHPSQELLA--SASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS---DDRTVRIW 221 (345)
T ss_dssp CCCCSCEEEEEECSSSSCEE--EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSCEEEE
T ss_pred cCcCCCeEEEEECCCCCEEE--EEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe---CCCeEEEe
Confidence 23578899999999999888 5778999999998643 22333 788999999999999999999 56799999
Q ss_pred EccC---------------CEEEEEeeC-C--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce---------e
Q 013884 267 DYVD---------------GKQLGTTRA-E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL---------F 319 (434)
Q Consensus 267 d~~~---------------~~~i~~~~~-~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~---------~ 319 (434)
|... .+++..+.+ | .+..++|+|++..|++++. |+.|+||+..... .
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~------d~~i~vw~~~~~~~~~~~~~~~~ 295 (345)
T 3fm0_A 222 RQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACG------DDAIRVFQEDPNSDPQQPTFSLT 295 (345)
T ss_dssp EEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEET------TSCEEEEEECTTSCTTSCCEEEE
T ss_pred ccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeC------CCeEEEEEeCCCCCcceeeEEEE
Confidence 9632 134444443 2 5667999999999999999 9999999985431 1
Q ss_pred ---eeeecccceeeEEEcCCCCCCC
Q 013884 320 ---FKKMFDKLFQAEWKPVSPDKFG 341 (434)
Q Consensus 320 ---~~~~~~~~~~~~w~p~~~~~~~ 341 (434)
...+...+..+.|+|+.+.++.
T Consensus 296 ~~~~~~h~~~V~~v~~~p~~~~~la 320 (345)
T 3fm0_A 296 AHLHQAHSQDVNCVAWNPKEPGLLA 320 (345)
T ss_dssp EEETTSSSSCEEEEEECSSSTTEEE
T ss_pred eeecccccCcEeEeEEeCCCceEEE
Confidence 1124567999999999865443
No 53
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.96 E-value=4.6e-27 Score=227.01 Aligned_cols=292 Identities=11% Similarity=0.098 Sum_probs=179.8
Q ss_pred EEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-------CCeEEEEeC
Q 013884 5 LTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-------TNEIQFFDT 77 (434)
Q Consensus 5 l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-------~~~i~v~~~ 77 (434)
+.+++++.|+.+.+ +.....|++..... .. |...+.+++|||||++||+++ ++.|++|+.
T Consensus 11 ~d~g~~~~~~~~~g------~~~~~~w~~p~~~p----~~---H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~ 77 (357)
T 4g56_B 11 VDLGTENLYFQSNG------SSKGSAWGRPVTAP----AC---MEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKD 77 (357)
T ss_dssp ---------------------------------------C---CCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESS
T ss_pred CCCCccceEEecCC------CccccccCCCCCCc----cc---ccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEEC
Confidence 45666666665433 45678898754332 11 336677999999999999986 457899987
Q ss_pred CCCCCc----eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee----eeeecccceeEEEE
Q 013884 78 TDFPKG----ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA----RRSFFRCSTVQLNW 149 (434)
Q Consensus 78 ~~~~~~----~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~----~~~~~~~~~~~~~w 149 (434)
...... .....+..+|.+++|+|+ +.+++. +.++.|+||++.+ ++.+. ....|...+.++.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~V~~~~~s~d-~~~l~~------s~dg~v~lWd~~~---~~~~~~~~~~~~~h~~~V~~v~~ 147 (357)
T 4g56_B 78 PEGAPNESLCTAGVQTEAGVTDVAWVSE-KGILVA------SDSGAVELWEILE---KESLLVNKFAKYEHDDIVKTLSV 147 (357)
T ss_dssp CC---CGGGCSEEEECSSCEEEEEEETT-TEEEEE------ETTSCEEEC-----------CCCCEEECCCSSCEEEEEE
T ss_pred CCCCcceeEecccCCCCCCEEEEEEcCC-CCEEEE------ECCCEEEEeeccc---cceeEEEeeccCCCCCCEEEEEE
Confidence 664321 112234567999999998 444432 3457899999977 33322 22346778899999
Q ss_pred CCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc
Q 013884 150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC 228 (434)
Q Consensus 150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~ 228 (434)
+|+|+.|+.. ..|.+.+.| +.... .....+ .+.+.|.+++|+|++..+++ ++..|+.|++||++.
T Consensus 148 spdg~~l~sg---s~dg~v~iw---------d~~~~-~~~~~~~~h~~~v~~v~~s~~~~~~~~-s~~~dg~v~~wd~~~ 213 (357)
T 4g56_B 148 FSDGTQAVSG---GKDFSVKVW---------DLSQK-AVLKSYNAHSSEVNCVAACPGKDTIFL-SCGEDGRILLWDTRK 213 (357)
T ss_dssp CSSSSEEEEE---ETTSCEEEE---------ETTTT-EEEEEECCCSSCEEEEEECTTCSSCEE-EEETTSCEEECCTTS
T ss_pred CCCCCEEEEE---eCCCeEEEE---------ECCCC-cEEEEEcCCCCCEEEEEEccCCCceee-eeccCCceEEEECCC
Confidence 9999986543 244444433 33232 222222 34789999999999875443 577799999999964
Q ss_pred -eeEEEc----CCcCeeEEEECCCC-CeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCC-CEEEEEEc
Q 013884 229 -RPILEL----GSGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDG-RYFMTATT 299 (434)
Q Consensus 229 -~~~~~~----~~~~~~~i~~sP~g-~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg-~~l~tas~ 299 (434)
..+..+ +...+++++|+|++ .+|++++ .++.|++||+.+++.+..+..+ .+..++|+|+| ++|++++.
T Consensus 214 ~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~---~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~ 290 (357)
T 4g56_B 214 PKPATRIDFCASDTIPTSVTWHPEKDDTFACGD---ETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISE 290 (357)
T ss_dssp SSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE---SSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEET
T ss_pred CceeeeeeeccccccccchhhhhcccceEEEee---cccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeC
Confidence 333222 46678999999986 5777777 5579999999998877777765 56679999998 57889998
Q ss_pred CCceeeCCcEEEEeecCce-eeee-ecccceeeEEEcC-CCCCCCC
Q 013884 300 APRLQIDNGIKIFHHNGSL-FFKK-MFDKLFQAEWKPV-SPDKFGD 342 (434)
Q Consensus 300 ~~rl~~D~~i~iw~~~g~~-~~~~-~~~~~~~~~w~p~-~~~~~~~ 342 (434)
|+.|+|||+.... +... +...+..++|+|. +..+++.
T Consensus 291 ------D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~ 330 (357)
T 4g56_B 291 ------DCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTV 330 (357)
T ss_dssp ------TSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEE
T ss_pred ------CCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEE
Confidence 9999999996544 3332 4568999999995 4444443
No 54
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=2.5e-26 Score=227.42 Aligned_cols=273 Identities=12% Similarity=0.156 Sum_probs=186.1
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc-----------EEEEEeecCcC---------CCCCCeeeecCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE-----------AVYQLFQKNMT---------KTTWPSIRFSSDE 61 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~-----------~~~~~~~~~~~---------~~~~~~~~~S~d~ 61 (434)
|++|+|||+|++|++++ .|+.|+|||+.+++ .+..+..+... ...+.+++|+|++
T Consensus 31 V~~v~~s~~g~~la~g~-----~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 31 ISTVEFNHSGELLATGD-----KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp EEEEEECSSSSEEEEEE-----TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred EEEEEECCCCCEEEEEc-----CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 78999999999999999 89999999999877 45666554200 1567799999998
Q ss_pred --cEEEEe-cCCeEEEEeCCCCCCc----------------------------------------eeeeeecCCeeEEEE
Q 013884 62 --AVACRM-ATNEIQFFDTTDFPKG----------------------------------------ILYRLRVPGVAAFEV 98 (434)
Q Consensus 62 --~~la~~-~~~~i~v~~~~~~~~~----------------------------------------~~~~~~~~~v~~~~~ 98 (434)
.+|+++ .|++|++|++...... .....|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 667666 5789999997542110 001234557999999
Q ss_pred eCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee-------eeeecccceeEEEECCCC-CeEEEEEEecccccCce
Q 013884 99 SKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA-------RRSFFRCSTVQLNWNRGS-TGLLAVAQSDVDKTNQS 170 (434)
Q Consensus 99 sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~-------~~~~~~~~~~~~~ws~~G-~~l~~~~~~~~d~~~~~ 170 (434)
+|+ +..++. + .++.|++|++... ...+. ....+...+.++.|+|+| ..|+.. + .|...+
T Consensus 186 ~~~-~~~l~s-----~-~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-~--~dg~i~- 252 (447)
T 3dw8_B 186 NSD-YETYLS-----A-DDLRINLWHLEIT--DRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYS-S--SKGTIR- 252 (447)
T ss_dssp CTT-SSEEEE-----E-CSSEEEEEETTEE--EEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEE-E--TTSCEE-
T ss_pred cCC-CCEEEE-----e-CCCeEEEEECCCC--CceeeeeecccccccccCcceEEEEECCCCCcEEEEE-e--CCCeEE-
Confidence 998 455553 1 3689999999741 23332 234567788999999999 654432 2 343333
Q ss_pred eecceeEEEEeeCCCcee---eeecC-CC------------CCeEEEEECcCCCEEEEEEccCCCeEEEEecc--ceeEE
Q 013884 171 YYGESKLNYLTTDGTHEG---LVPLR-KE------------GPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--CRPIL 232 (434)
Q Consensus 171 ~~g~~~l~~l~~~~~~~~---~v~l~-~~------------~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~--~~~~~ 232 (434)
++++...... ...+. +. ++|.+++|+|+|+.|+. +.. +.|++||++ ...+.
T Consensus 253 --------iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--~~~-~~v~iwd~~~~~~~~~ 321 (447)
T 3dw8_B 253 --------LCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMT--RDY-LSVKVWDLNMENRPVE 321 (447)
T ss_dssp --------EEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEE--EES-SEEEEEETTCCSSCSC
T ss_pred --------EEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEE--eeC-CeEEEEeCCCCccccc
Confidence 2332222110 11111 12 38999999999999884 555 899999996 33444
Q ss_pred Ec--CCcC---------------eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC----------------
Q 013884 233 EL--GSGP---------------YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA---------------- 279 (434)
Q Consensus 233 ~~--~~~~---------------~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~---------------- 279 (434)
.+ |... +..++|+|+|++|++++ .+|.|+|||+.+++.+.....
T Consensus 322 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (447)
T 3dw8_B 322 TYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGS---YNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVC 398 (447)
T ss_dssp CEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEEC---STTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEE
T ss_pred eeeccccccccccccccccccccceEEEECCCCCEEEEec---cCCEEEEEEcCCCcceeeeecccccccccccCCcccc
Confidence 33 3221 22399999999999988 567999999999876642211
Q ss_pred ------------------CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884 280 ------------------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 280 ------------------~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~ 313 (434)
..+..++|+|+|.+|++++. +.+.||.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-------~~~~~~~ 443 (447)
T 3dw8_B 399 ASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATT-------NNLYIFQ 443 (447)
T ss_dssp CSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECS-------SCEEEEE
T ss_pred ccCCcccccccccccccCCceeEEEECCCCCEEEEEec-------ceeeeec
Confidence 13566999999999999885 4578875
No 55
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.95 E-value=4.5e-26 Score=214.18 Aligned_cols=236 Identities=12% Similarity=0.179 Sum_probs=161.7
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC--cEEEEEeecCcCCCCCCeeeecCC--CcEEEEec-CCeEEEEe
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG--EAVYQLFQKNMTKTTWPSIRFSSD--EAVACRMA-TNEIQFFD 76 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g--~~~~~~~~~~~~~~~~~~~~~S~d--~~~la~~~-~~~i~v~~ 76 (434)
|++++|||+|++|+|++ .|++|+|||+.++ +.+.++..+. ..+.+++|+++ +++|++++ |++|+|||
T Consensus 12 V~~~~~s~~g~~las~s-----~D~~v~iw~~~~~~~~~~~~l~gH~---~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd 83 (297)
T 2pm7_B 12 IHDAVMDYYGKRMATCS-----SDKTIKIFEVEGETHKLIDTLTGHE---GPVWRVDWAHPKFGTILASCSYDGKVMIWK 83 (297)
T ss_dssp EEEEEECTTSSEEEEEE-----TTSCEEEEEBCSSCBCCCEEECCCS---SCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred eEEEEECCCCCEEEEEe-----CCCEEEEEecCCCCcEEEEEEcccc---CCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence 78999999999999999 8999999999753 5667776543 66779999874 88999885 67999999
Q ss_pred CCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC--CC
Q 013884 77 TTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG--ST 154 (434)
Q Consensus 77 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~--G~ 154 (434)
+.......... ...|...+.++.|+|+ |.
T Consensus 84 ~~~~~~~~~~~-------------------------------------------------~~~h~~~v~~v~~~p~~~g~ 114 (297)
T 2pm7_B 84 EENGRWSQIAV-------------------------------------------------HAVHSASVNSVQWAPHEYGP 114 (297)
T ss_dssp BSSSCBCCCEE-------------------------------------------------ECCCSSCEEEEEECCGGGCS
T ss_pred cCCCceEEEEE-------------------------------------------------eecCCCceeEEEeCcCCCCc
Confidence 86532100000 0112223445666665 55
Q ss_pred eEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcC-------------CCEEEEEEccCCCeE
Q 013884 155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS-------------GSEFAVVYGFMPASA 221 (434)
Q Consensus 155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspd-------------g~~~av~~g~~~~~i 221 (434)
.|+.. ..|.+.+ +|.+.............+...|.+++|+|+ ++.|+ +|..|+.|
T Consensus 115 ~l~s~---s~d~~v~-------~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~--sgs~D~~v 182 (297)
T 2pm7_B 115 MLLVA---SSDGKVS-------VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFV--TGGADNLV 182 (297)
T ss_dssp EEEEE---ETTSEEE-------EEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEE--EEETTSCE
T ss_pred EEEEE---ECCCcEE-------EEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEE--EEcCCCcE
Confidence 44332 1233322 232221111111122235678999999997 45666 68889999
Q ss_pred EEEeccce-----eEEEc--CCcCeeEEEECCCC---CeEEEEecCCCCCeEEEEEccCCE---EEEEe--eCC--CceE
Q 013884 222 TIFNKKCR-----PILEL--GSGPYNTVRWNPKG---KFLCLAGFGNLPGDMAFWDYVDGK---QLGTT--RAE--CSVT 284 (434)
Q Consensus 222 ~l~d~~~~-----~~~~~--~~~~~~~i~~sP~g---~~l~~~~~~~~~g~i~iwd~~~~~---~i~~~--~~~--~~~~ 284 (434)
++||++.. ....+ |...+++++|+|++ ++|++++ .+|+|+|||+++.. ....+ ..+ .+..
T Consensus 183 ~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s---~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~ 259 (297)
T 2pm7_B 183 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS---QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 259 (297)
T ss_dssp EEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE---TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEE
T ss_pred EEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEE---CCCcEEEEEeCCCCCccceeeeecccCCCcEEE
Confidence 99998632 23334 78899999999995 7899998 55799999987642 12222 222 4566
Q ss_pred EEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884 285 SEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 285 ~~wspdg~~l~tas~~~rl~~D~~i~iw~~~ 315 (434)
++|+|||++|++++. |+.|+||+..
T Consensus 260 ~~~s~~g~~las~~~------D~~v~lw~~~ 284 (297)
T 2pm7_B 260 ASWSLSGNVLALSGG------DNKVTLWKEN 284 (297)
T ss_dssp EEECSSSCCEEEEET------TSCEEEEEEC
T ss_pred EEECCCCCEEEEEcC------CCcEEEEEEC
Confidence 999999999999999 9999999974
No 56
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.95 E-value=1.3e-27 Score=231.65 Aligned_cols=238 Identities=11% Similarity=0.083 Sum_probs=163.8
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC--cEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG--EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g--~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~ 78 (434)
|++++|||+|++|++++ .|+.|+|||+.++ +.+..+..+ ...+.+++|+||+++|++++ |++|++||+.
T Consensus 14 v~~~~~s~~g~~l~~~~-----~d~~i~iw~~~~~~~~~~~~~~~h---~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTT-----ATNQVELYEQDGNGWKHARTFSDH---DKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp CSCCEECSSSSEEECCC-----SSSCBCEEEEETTEEEECCCBCCC---SSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred EEEEEECCCCCEEEEec-----CCCEEEEEEccCCceEEEEEEecC---CceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 78999999999999987 7899999999988 566666543 36777999999999999885 6799999998
Q ss_pred CCC---CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee-cccceeEEEECCCCC
Q 013884 79 DFP---KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF-FRCSTVQLNWNRGST 154 (434)
Q Consensus 79 ~~~---~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~-~~~~~~~~~ws~~G~ 154 (434)
... .......+...|..++|+|++. .+++ .+.++.|++|++........+..... |...+.++.|+|+|+
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~-----~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 159 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNED-KFAV-----GSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV 159 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSS-CCEE-----EESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS
T ss_pred CCCceeeeeEecccCCceEEEEECCCCC-EEEE-----EecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC
Confidence 754 2222334566799999999844 4433 23457899999987211113555555 788899999999999
Q ss_pred eEEEEEEecccccCceeecceeEEEEeeCC---------------CceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC
Q 013884 155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDG---------------THEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA 219 (434)
Q Consensus 155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~---------------~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~ 219 (434)
.|+... .|...+ +|.+.... .......+.+.+.|.+++|+|+|+.|+ ++..|+
T Consensus 160 ~l~~~~---~d~~i~-------iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~--~~~~d~ 227 (377)
T 3dwl_C 160 LLAAGC---ADRKAY-------VLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALA--YAGHDS 227 (377)
T ss_dssp EEEEEE---SSSCEE-------EEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEE--EEETTT
T ss_pred EEEEEe---CCCEEE-------EEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEE--EEeCCC
Confidence 765532 344433 33332110 012222335678999999999999888 577899
Q ss_pred eEEEEecccee-----EE--EcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013884 220 SATIFNKKCRP-----IL--ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV 269 (434)
Q Consensus 220 ~i~l~d~~~~~-----~~--~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~ 269 (434)
.|++||++... +. ..|...+.+++|+|+|++|++++.+ .+.+|+..
T Consensus 228 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~----~~~~~~~~ 280 (377)
T 3dwl_C 228 SVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNY----SPILLQGN 280 (377)
T ss_dssp EEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSS----SEEEECCC
T ss_pred cEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCC----cEEEEEeC
Confidence 99999986332 22 3377889999999999999887632 35577654
No 57
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=1.1e-25 Score=222.11 Aligned_cols=290 Identities=12% Similarity=0.114 Sum_probs=207.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeec--CcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQK--NMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~--~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~ 78 (434)
+.+++|||++.++++.+ .|+.|++||+.+++.+..+... ..+...+.++.|++++++++++. ++.|++||+.
T Consensus 125 ~~~~~~s~~~~~~~~~~-----~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~ 199 (433)
T 3bws_A 125 PKSVRFIDNTRLAIPLL-----EDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLK 199 (433)
T ss_dssp BCCCEESSSSEEEEEBT-----TSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETT
T ss_pred ceEEEEeCCCeEEEEeC-----CCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECC
Confidence 45789999777777766 6788999999999987643321 11334566899999999999885 5899999998
Q ss_pred CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013884 79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~ 158 (434)
..........+...+..++|+|++. .+.+. ...++.|++|++.+ ++.+..... ......+.|+|+|+.|++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~----~~~~~~i~~~d~~~---~~~~~~~~~-~~~~~~~~~~~~g~~l~~ 270 (433)
T 3bws_A 200 TLAYKATVDLTGKWSKILLYDPIRD-LVYCS----NWISEDISVIDRKT---KLEIRKTDK-IGLPRGLLLSKDGKELYI 270 (433)
T ss_dssp TCCEEEEEECSSSSEEEEEEETTTT-EEEEE----ETTTTEEEEEETTT---TEEEEECCC-CSEEEEEEECTTSSEEEE
T ss_pred CceEEEEEcCCCCCeeEEEEcCCCC-EEEEE----ecCCCcEEEEECCC---CcEEEEecC-CCCceEEEEcCCCCEEEE
Confidence 7554333334456789999999854 33222 22456899999976 555554443 345778999999998776
Q ss_pred EEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEEEc-CC
Q 013884 159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL-GS 236 (434)
Q Consensus 159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~~-~~ 236 (434)
...... .. . .....|+.++.... .....+...+.+..++|+|+++.+++ ++..++.+.+||++. ..+..+ +.
T Consensus 271 ~~~~~~-~~-~--~~dg~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~g~~l~~-~~~~~~~v~v~d~~~~~~~~~~~~~ 344 (433)
T 3bws_A 271 AQFSAS-NQ-E--SGGGRLGIYSMDKE-KLIDTIGPPGNKRHIVSGNTENKIYV-SDMCCSKIEVYDLKEKKVQKSIPVF 344 (433)
T ss_dssp EEEESC-TT-C--SCCEEEEEEETTTT-EEEEEEEEEECEEEEEECSSTTEEEE-EETTTTEEEEEETTTTEEEEEEECS
T ss_pred EECCCC-cc-c--cCCCeEEEEECCCC-cEEeeccCCCCcceEEECCCCCEEEE-EecCCCEEEEEECCCCcEEEEecCC
Confidence 543211 00 0 01224556665443 22222333457889999999988776 467789999999974 344444 56
Q ss_pred cCeeEEEECCCCCeEEEEecCCC------------CCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCce
Q 013884 237 GPYNTVRWNPKGKFLCLAGFGNL------------PGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRL 303 (434)
Q Consensus 237 ~~~~~i~~sP~g~~l~~~~~~~~------------~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~~rl 303 (434)
..+.+++|+|+|++|++++.++. +|.|++||..+++.+..+..+ .+..++|+|||++|++++..
T Consensus 345 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--- 421 (433)
T 3bws_A 345 DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFL--- 421 (433)
T ss_dssp SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETT---
T ss_pred CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECC---
Confidence 77899999999999998875432 579999999999988888765 55669999999999988754
Q ss_pred eeCCcEEEEeecC
Q 013884 304 QIDNGIKIFHHNG 316 (434)
Q Consensus 304 ~~D~~i~iw~~~g 316 (434)
|+.|+||++++
T Consensus 422 --d~~i~v~~~~~ 432 (433)
T 3bws_A 422 --DHQIRVYRRDG 432 (433)
T ss_dssp --TTEEEEEEETT
T ss_pred --CCeEEEEEecC
Confidence 89999999875
No 58
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.95 E-value=3.8e-25 Score=208.80 Aligned_cols=263 Identities=16% Similarity=0.215 Sum_probs=198.4
Q ss_pred CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884 48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
|...+.+++|+||+++|++++ ++.|++|+..+.........+...|..++|+|+ +..++. .+.++.|++|++.
T Consensus 22 h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s-----~~~d~~i~vwd~~ 95 (312)
T 4ery_A 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-SNLLVS-----ASDDKTLKIWDVS 95 (312)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT-SSEEEE-----EETTSEEEEEETT
T ss_pred cCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCC-CCEEEE-----ECCCCEEEEEECC
Confidence 346788999999999999885 679999999876543444456678999999998 455543 3456799999998
Q ss_pred CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcC
Q 013884 127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS 206 (434)
Q Consensus 127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspd 206 (434)
+ .+.+.....+...+..+.|+|+|+.|+.. ..|...+ .+++...........+..+|.+++|+|+
T Consensus 96 ~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~---~~d~~i~---------iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (312)
T 4ery_A 96 S---GKCLKTLKGHSNYVFCCNFNPQSNLIVSG---SFDESVR---------IWDVKTGKCLKTLPAHSDPVSAVHFNRD 160 (312)
T ss_dssp T---CCEEEEEECCSSCEEEEEECSSSSEEEEE---ETTSCEE---------EEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred C---CcEEEEEcCCCCCEEEEEEcCCCCEEEEE---eCCCcEE---------EEECCCCEEEEEecCCCCcEEEEEEcCC
Confidence 8 77788888888899999999999986543 2344433 3333332211122234679999999999
Q ss_pred CCEEEEEEccCCCeEEEEeccc-eeEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC-
Q 013884 207 GSEFAVVYGFMPASATIFNKKC-RPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC- 281 (434)
Q Consensus 207 g~~~av~~g~~~~~i~l~d~~~-~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~- 281 (434)
++.|+ ++..++.|++||++. ..+..+ +..+++.++|+|+|++|++++ .+|.|++||+.+++.+..+.++.
T Consensus 161 ~~~l~--~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~ 235 (312)
T 4ery_A 161 GSLIV--SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT---LDNTLKLWDYSKGKCLKTYTGHKN 235 (312)
T ss_dssp SSEEE--EEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE---TTTEEEEEETTTTEEEEEECSSCC
T ss_pred CCEEE--EEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc---CCCeEEEEECCCCcEEEEEEecCC
Confidence 99888 577899999999964 334443 456789999999999999998 56799999999999988887652
Q ss_pred ---ceEEEE-CCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeeee--ecccceeeEEEcCCCCCCCC
Q 013884 282 ---SVTSEW-SPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFKK--MFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 282 ---~~~~~w-spdg~~l~tas~~~rl~~D~~i~iw~~~g~-~~~~~--~~~~~~~~~w~p~~~~~~~~ 342 (434)
.....| .+++++|++++. |+.|+|||+... ++... +.+.+..+.|+|....++..
T Consensus 236 ~~~~~~~~~~~~~~~~l~sg~~------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~ 297 (312)
T 4ery_A 236 EKYCIFANFSVTGGKWIVSGSE------DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 297 (312)
T ss_dssp SSSCCCEEEECSSSCEEEECCT------TSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEE
T ss_pred ceEEEEEEEEeCCCcEEEEECC------CCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEE
Confidence 122444 478899999999 999999999654 44333 45679999999998776654
No 59
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=4.7e-26 Score=218.57 Aligned_cols=262 Identities=12% Similarity=0.113 Sum_probs=183.7
Q ss_pred cceEEecCC---CcEEEEEecCCCCCCCcEEEEEcCC-CcEE-EEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEE
Q 013884 2 LLLLTCLRV---GLIIQTFQKSSTPQEKNVILWKTET-GEAV-YQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFF 75 (434)
Q Consensus 2 V~~l~fSP~---g~~L~t~~~~~~~~d~~v~iWd~~~-g~~~-~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~ 75 (434)
|++|+|||+ |++|++++ .|+.|+|||+.+ +..+ ..+..+. ..+.+++|+||+++|+++. ++.|++|
T Consensus 42 v~~~~~~~~~~~g~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~s~~~dg~v~iw 113 (368)
T 3mmy_A 42 IGCLSFSPPTLPGNFLIAGS-----WANDVRCWEVQDSGQTIPKAQQMHT---GPVLDVCWSDDGSKVFTASCDKTAKMW 113 (368)
T ss_dssp EEEEEECCTTSSSEEEEEEE-----TTSEEEEEEECTTSCEEEEEEEECS---SCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eEEEEEcCCCCCceEEEEEC-----CCCcEEEEEcCCCCceeEEEecccc---CCEEEEEECcCCCEEEEEcCCCcEEEE
Confidence 789999999 69999999 899999999997 6665 4555443 6777999999999999885 6799999
Q ss_pred eCCCCCCceeeeeecCCeeEEEE--eCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCC
Q 013884 76 DTTDFPKGILYRLRVPGVAAFEV--SKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGS 153 (434)
Q Consensus 76 ~~~~~~~~~~~~~~~~~v~~~~~--sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G 153 (434)
|+..... .....+...|..+.| +|+ +..+++ .+.++.|++|++.. .+.+.....+. ....+.+..
T Consensus 114 d~~~~~~-~~~~~~~~~v~~~~~~~~~~-~~~l~~-----~~~dg~i~vwd~~~---~~~~~~~~~~~-~~~~~~~~~-- 180 (368)
T 3mmy_A 114 DLSSNQA-IQIAQHDAPVKTIHWIKAPN-YSCVMT-----GSWDKTLKFWDTRS---SNPMMVLQLPE-RCYCADVIY-- 180 (368)
T ss_dssp ETTTTEE-EEEEECSSCEEEEEEEECSS-CEEEEE-----EETTSEEEEECSSC---SSCSEEEECSS-CEEEEEEET--
T ss_pred EcCCCCc-eeeccccCceEEEEEEeCCC-CCEEEE-----ccCCCcEEEEECCC---CcEEEEEecCC-CceEEEecC--
Confidence 9987553 233445667999999 666 333432 24567899999987 66666655443 444454443
Q ss_pred CeEEEEEEecccccCceeecceeEEEEeeCCCceeeee--cCCCCCeEEEEECcCCCE--EEEEEccCCCeEEEEeccce
Q 013884 154 TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP--LRKEGPVHDVQWSYSGSE--FAVVYGFMPASATIFNKKCR 229 (434)
Q Consensus 154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~--l~~~~~i~~~~wspdg~~--~av~~g~~~~~i~l~d~~~~ 229 (434)
..+++.. .+.. +..++.......... ......+..+++.++... -.++++..++.+.+||++..
T Consensus 181 ~~~~~~~---~~~~---------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~ 248 (368)
T 3mmy_A 181 PMAVVAT---AERG---------LIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPP 248 (368)
T ss_dssp TEEEEEE---GGGC---------EEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCS
T ss_pred CeeEEEe---CCCc---------EEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCC
Confidence 3443322 2222 223332222111111 122345566666555443 22336888999999998643
Q ss_pred ----eEEEc--CCc------------CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECC
Q 013884 230 ----PILEL--GSG------------PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSP 289 (434)
Q Consensus 230 ----~~~~~--~~~------------~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wsp 289 (434)
.+..+ +.. .+++++|+|+|++|++++ .+|.|+|||+.+++.+..+..| .+..++|+|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 325 (368)
T 3mmy_A 249 NPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG---SDGRFSFWDKDARTKLKTSEQLDQPISACCFNH 325 (368)
T ss_dssp CHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEE---TTSCEEEEETTTTEEEEECCCCSSCEEEEEECT
T ss_pred CccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEc---cCCeEEEEECCCCcEEEEecCCCCCceEEEECC
Confidence 23333 333 699999999999999999 5679999999999999988875 566799999
Q ss_pred CCCEEEEEEc
Q 013884 290 DGRYFMTATT 299 (434)
Q Consensus 290 dg~~l~tas~ 299 (434)
||++|++++.
T Consensus 326 ~g~~l~~~s~ 335 (368)
T 3mmy_A 326 NGNIFAYASS 335 (368)
T ss_dssp TSSCEEEEEC
T ss_pred CCCeEEEEec
Confidence 9999999998
No 60
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.95 E-value=2e-25 Score=218.30 Aligned_cols=254 Identities=12% Similarity=0.141 Sum_probs=188.0
Q ss_pred CCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeec------------------CCeeEEEEeCCCCCeEEEEe
Q 013884 49 KTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRV------------------PGVAAFEVSKAPGSHVAVFV 110 (434)
Q Consensus 49 ~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~------------------~~v~~~~~sp~~~~~ia~~~ 110 (434)
...+.+++|||||++||++.++.++||++.+.........+. ..|.+++|+|+ +..++.
T Consensus 64 ~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d-g~~l~s-- 140 (393)
T 1erj_A 64 TSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD-GKFLAT-- 140 (393)
T ss_dssp SSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT-SSEEEE--
T ss_pred CCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCC-CCEEEE--
Confidence 367779999999999999988999999997754322111111 13889999998 455553
Q ss_pred cCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeee
Q 013884 111 PESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV 190 (434)
Q Consensus 111 ~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v 190 (434)
++.++.|+||++.+ .+.+.....|...+..+.|+|+|+.|+.. ..|.+.+ ++++... ....
T Consensus 141 ---~~~d~~i~iwd~~~---~~~~~~~~~h~~~v~~~~~~p~~~~l~s~---s~d~~v~---------iwd~~~~-~~~~ 201 (393)
T 1erj_A 141 ---GAEDRLIRIWDIEN---RKIVMILQGHEQDIYSLDYFPSGDKLVSG---SGDRTVR---------IWDLRTG-QCSL 201 (393)
T ss_dssp ---EETTSCEEEEETTT---TEEEEEECCCSSCEEEEEECTTSSEEEEE---ETTSEEE---------EEETTTT-EEEE
T ss_pred ---EcCCCeEEEEECCC---CcEEEEEccCCCCEEEEEEcCCCCEEEEe---cCCCcEE---------EEECCCC-eeEE
Confidence 34567999999987 77777888899999999999999986543 2444443 3333332 3334
Q ss_pred ecCCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEeccce-eEEEc---------CCcCeeEEEECCCCCeEEEEecCCC
Q 013884 191 PLRKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCR-PILEL---------GSGPYNTVRWNPKGKFLCLAGFGNL 259 (434)
Q Consensus 191 ~l~~~~~i~~~~wsp-dg~~~av~~g~~~~~i~l~d~~~~-~~~~~---------~~~~~~~i~~sP~g~~l~~~~~~~~ 259 (434)
.+.....+..++|+| +++.|+ +|..|+.|++||++.. .+..+ |...+.+++|+|+|++|++++ .
T Consensus 202 ~~~~~~~v~~~~~~~~~~~~l~--~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s---~ 276 (393)
T 1erj_A 202 TLSIEDGVTTVAVSPGDGKYIA--AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS---L 276 (393)
T ss_dssp EEECSSCEEEEEECSTTCCEEE--EEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE---T
T ss_pred EEEcCCCcEEEEEECCCCCEEE--EEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe---C
Confidence 444567899999999 888887 5788999999998643 23222 567899999999999999998 5
Q ss_pred CCeEEEEEccCC------------EEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee--
Q 013884 260 PGDMAFWDYVDG------------KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK-- 322 (434)
Q Consensus 260 ~g~i~iwd~~~~------------~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~~-- 322 (434)
+|.|++||+.+. .+...+.+| .+..++|+|+|++|++++. |+.|+|||.. |+.+...
T Consensus 277 d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~------D~~v~iwd~~~~~~~~~l~~ 350 (393)
T 1erj_A 277 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK------DRGVLFWDKKSGNPLLMLQG 350 (393)
T ss_dssp TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET------TSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeC------CCeEEEEECCCCeEEEEECC
Confidence 679999998753 234445555 4667999999999999999 9999999984 5554433
Q ss_pred ecccceeeEEEcC
Q 013884 323 MFDKLFQAEWKPV 335 (434)
Q Consensus 323 ~~~~~~~~~w~p~ 335 (434)
+...+..+.|.|.
T Consensus 351 h~~~v~~v~~~~~ 363 (393)
T 1erj_A 351 HRNSVISVAVANG 363 (393)
T ss_dssp CSSCEEEEEECSS
T ss_pred CCCCEEEEEecCC
Confidence 5567899999874
No 61
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=2.2e-25 Score=219.72 Aligned_cols=305 Identities=11% Similarity=0.083 Sum_probs=213.1
Q ss_pred ceEEecCCCc-EEEEEecCCCCCCC----cEEEEEc--CCCcEEE--EEeecCcCCCCCCeeeecC--------------
Q 013884 3 LLLTCLRVGL-IIQTFQKSSTPQEK----NVILWKT--ETGEAVY--QLFQKNMTKTTWPSIRFSS-------------- 59 (434)
Q Consensus 3 ~~l~fSP~g~-~L~t~~~~~~~~d~----~v~iWd~--~~g~~~~--~~~~~~~~~~~~~~~~~S~-------------- 59 (434)
....|++.|. +|++.+-. ...|+ .|+|||+ .+|+++. .+..+. ..+..+.+++
T Consensus 66 ~~~~w~~~g~~~~~~g~~~-~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 66 QPAAWSALGIDAVVVGQVT-PNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNK---QWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp CHHHHHTTTCCEEEEEEEE-ECTTSCEEEEEEEEECSSSTTCEEEEEEEEECG---GGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CHHHHHhcCCCEEEEEEEE-ECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcCh---hHHHHHHHHHHHHHHHHHcCCCCc
Confidence 3456788886 55565421 11345 8999999 9999874 355443 3454556654
Q ss_pred CCcEEEEe-cC------CeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCC
Q 013884 60 DEAVACRM-AT------NEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQ 132 (434)
Q Consensus 60 d~~~la~~-~~------~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~ 132 (434)
.+..++++ .+ ++|++||..... ......+...+.+++|||+ +..+++...+. ....|++|++.+ ++
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~~~~~~v~~~~~Spd-g~~la~~s~~~--~~~~i~~~d~~t---g~ 214 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPD-GSKLAYVTFES--GRSALVIQTLAN---GA 214 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEEEEESSCEEEEEECTT-SSEEEEEECTT--SSCEEEEEETTT---CC
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCCCC-CEEEeCCCCcceeeEEcCC-CCEEEEEEecC--CCcEEEEEECCC---Cc
Confidence 25555554 32 699999987533 3444455668999999999 55665544322 236899999987 44
Q ss_pred ceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEE
Q 013884 133 PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAV 212 (434)
Q Consensus 133 ~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av 212 (434)
.. ....+...+..+.|+|||+.|++..+.+ +...|+.+++.+.... ....+.+.+.+++|+|||+.+++
T Consensus 215 ~~-~l~~~~~~~~~~~~spdg~~la~~~~~~---------g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~l~~ 283 (415)
T 2hqs_A 215 VR-QVASFPRHNGAPAFSPDGSKLAFALSKT---------GSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAF 283 (415)
T ss_dssp EE-EEECCSSCEEEEEECTTSSEEEEEECTT---------SSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEE
T ss_pred EE-EeecCCCcccCEEEcCCCCEEEEEEecC---------CCceEEEEECCCCCEE-eCcCCCCcccceEECCCCCEEEE
Confidence 43 4555666788999999999987654321 2335787777655332 22234678999999999999997
Q ss_pred EEccCCC--eEEEEeccceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEEC
Q 013884 213 VYGFMPA--SATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWS 288 (434)
Q Consensus 213 ~~g~~~~--~i~l~d~~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~ws 288 (434)
.+. .++ .|.+||+.+.....+ +...+.+++|||||++|++++.++..+.|++||+.+++......+..+..++|+
T Consensus 284 ~s~-~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~s 362 (415)
T 2hqs_A 284 TSD-QAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLA 362 (415)
T ss_dssp EEC-TTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEEC
T ss_pred EEC-CCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCCCcCCeEEc
Confidence 543 233 788889876554443 556778899999999999988654346899999998876544444456679999
Q ss_pred CCCCEEEEEEcCCceeeCC---cEEEEeecCceeeeee--cccceeeEEEcCC
Q 013884 289 PDGRYFMTATTAPRLQIDN---GIKIFHHNGSLFFKKM--FDKLFQAEWKPVS 336 (434)
Q Consensus 289 pdg~~l~tas~~~rl~~D~---~i~iw~~~g~~~~~~~--~~~~~~~~w~p~~ 336 (434)
|||++|++++. |+ .|++|+++|+.+.... ..++.+++|.|.-
T Consensus 363 pdg~~l~~~s~------~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 363 PNGTMVIYSSS------QGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp TTSSEEEEEEE------ETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCCC
T ss_pred CCCCEEEEEEc------CCCccEEEEEECCCCcEEEeeCCCCCCcCCcccccc
Confidence 99999999998 66 6999999998766653 3589999999974
No 62
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.95 E-value=2.8e-25 Score=228.57 Aligned_cols=292 Identities=10% Similarity=0.042 Sum_probs=215.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC----cEEEEEeecCcCCCC-CCeeeecC--CCcEEEEec-CCeEE
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG----EAVYQLFQKNMTKTT-WPSIRFSS--DEAVACRMA-TNEIQ 73 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g----~~~~~~~~~~~~~~~-~~~~~~S~--d~~~la~~~-~~~i~ 73 (434)
|.+++|||+|++|++.+ ++.|+|||+.++ +.+..+..+. .. +.+++|+| |+++|+++. +++|+
T Consensus 21 v~~~~~spdg~~l~~~~------~~~v~v~~~~~~~~~~~~~~~~~~h~---~~~v~~~~~sp~~~~~~l~s~~~dg~v~ 91 (615)
T 1pgu_A 21 TTHLSYDPTTNAIAYPC------GKSAFVRCLDDGDSKVPPVVQFTGHG---SSVVTTVKFSPIKGSQYLCSGDESGKVI 91 (615)
T ss_dssp CCCCEEETTTTEEEEEE------TTEEEEEECCSSCCSSCSEEEECTTT---TSCEEEEEECSSTTCCEEEEEETTSEEE
T ss_pred eeEEEECCCCCEEEEec------CCeEEEEECCCCCCccccceEEecCC---CceEEEEEECcCCCCCEEEEecCCCEEE
Confidence 78999999999999987 578999999999 8888886654 56 77999999 999999985 67999
Q ss_pred EEeCCCC--------CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013884 74 FFDTTDF--------PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV 145 (434)
Q Consensus 74 v~~~~~~--------~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~ 145 (434)
||++... ........+...|..++|+|+ +..+++...+ ....+.|.+|+. ...+.....+...+.
T Consensus 92 vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~-~~~~~~v~~~d~-----~~~~~~~~~~~~~v~ 164 (615)
T 1pgu_A 92 VWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE-GRRLCVVGEG-RDNFGVFISWDS-----GNSLGEVSGHSQRIN 164 (615)
T ss_dssp EEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTT-SSEEEEEECC-SSCSEEEEETTT-----CCEEEECCSCSSCEE
T ss_pred EEeCCCCcccccccccccchhhcccccEEEEEEeCC-CCEEEEeccC-CCCccEEEEEEC-----CCcceeeecCCccEE
Confidence 9999643 111222334567999999999 4555443221 222367777773 567777788888999
Q ss_pred EEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec-CCCC---CeEEEEECcC-CCEEEEEEccCCCe
Q 013884 146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEG---PVHDVQWSYS-GSEFAVVYGFMPAS 220 (434)
Q Consensus 146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~---~i~~~~wspd-g~~~av~~g~~~~~ 220 (434)
.+.|+|+|..+++.++ .|...+. ++.... .....+ .+.+ .|.+++|+|+ ++.++ ++..++.
T Consensus 165 ~~~~~~~~~~~l~~~~--~d~~v~v---------wd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~--~~~~dg~ 230 (615)
T 1pgu_A 165 ACHLKQSRPMRSMTVG--DDGSVVF---------YQGPPF-KFSASDRTHHKQGSFVRDVEFSPDSGEFVI--TVGSDRK 230 (615)
T ss_dssp EEEECSSSSCEEEEEE--TTTEEEE---------EETTTB-EEEEEECSSSCTTCCEEEEEECSTTCCEEE--EEETTCC
T ss_pred EEEECCCCCcEEEEEe--CCCcEEE---------EeCCCc-ceeeeecccCCCCceEEEEEECCCCCCEEE--EEeCCCe
Confidence 9999999986544433 3333333 332222 222222 2455 8999999999 98888 4677899
Q ss_pred EEEEecc-ceeEEEc------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC------CceEEEE
Q 013884 221 ATIFNKK-CRPILEL------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE------CSVTSEW 287 (434)
Q Consensus 221 i~l~d~~-~~~~~~~------~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~------~~~~~~w 287 (434)
|.+||++ +..+..+ |...+.++.|+ ++++|++++ .+|.|++||+.+++.+..+..+ .+..+.|
T Consensus 231 i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~---~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (615)
T 1pgu_A 231 ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVG---ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA 306 (615)
T ss_dssp EEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEE---TTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE
T ss_pred EEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEc---CCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEe
Confidence 9999986 4444444 56889999999 999999998 5579999999999988888765 3445778
Q ss_pred CCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee--ecccceeeEEEcC
Q 013884 288 SPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK--MFDKLFQAEWKPV 335 (434)
Q Consensus 288 spdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~~--~~~~~~~~~w~p~ 335 (434)
+ ++.+|++++. |+.|++|++. ++.+... +...+..+.| |.
T Consensus 307 ~-~~~~l~~~~~------~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~ 349 (615)
T 1pgu_A 307 T-GNGRIISLSL------DGTLNFYELGHDEVLKTISGHNKGITALTV-NP 349 (615)
T ss_dssp E-ETTEEEEEET------TSCEEEEETTEEEEEEEECCCSSCEEEEET-TT
T ss_pred C-CCCeEEEEEC------CCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC
Confidence 5 9999999999 9999999986 4443332 3456777777 65
No 63
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.95 E-value=7.2e-25 Score=225.47 Aligned_cols=305 Identities=13% Similarity=0.131 Sum_probs=215.3
Q ss_pred cceEEecCCCc-EEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCC---CCCeeeecCC-CcEEEEec-CCeEEEE
Q 013884 2 LLLLTCLRVGL-IIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKT---TWPSIRFSSD-EAVACRMA-TNEIQFF 75 (434)
Q Consensus 2 V~~l~fSP~g~-~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~---~~~~~~~S~d-~~~la~~~-~~~i~v~ 75 (434)
|.+++|+|+|+ +|++.+ .|+.|+|||+.+++.+..+..+. . .+.+++|+|| +++|+++. ++.|++|
T Consensus 163 v~~~~~~~~~~~~l~~~~-----~d~~v~vwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw 234 (615)
T 1pgu_A 163 INACHLKQSRPMRSMTVG-----DDGSVVFYQGPPFKFSASDRTHH---KQGSFVRDVEFSPDSGEFVITVGSDRKISCF 234 (615)
T ss_dssp EEEEEECSSSSCEEEEEE-----TTTEEEEEETTTBEEEEEECSSS---CTTCCEEEEEECSTTCCEEEEEETTCCEEEE
T ss_pred EEEEEECCCCCcEEEEEe-----CCCcEEEEeCCCcceeeeecccC---CCCceEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 68999999998 788888 89999999999999988887543 4 6779999999 99999874 6899999
Q ss_pred eCCCCCCceee-e---eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec----ccceeEE
Q 013884 76 DTTDFPKGILY-R---LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF----RCSTVQL 147 (434)
Q Consensus 76 ~~~~~~~~~~~-~---~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~----~~~~~~~ 147 (434)
|+.+....... . .+...|..+.|+ + +..+++. +.++.|++|++.+ .+.+.....+ ......+
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~-~~~l~~~-----~~d~~i~~wd~~~---~~~~~~~~~~~~~~~~~~~~~ 304 (615)
T 1pgu_A 235 DGKSGEFLKYIEDDQEPVQGGIFALSWL-D-SQKFATV-----GADATIRVWDVTT---SKCVQKWTLDKQQLGNQQVGV 304 (615)
T ss_dssp ETTTCCEEEECCBTTBCCCSCEEEEEES-S-SSEEEEE-----ETTSEEEEEETTT---TEEEEEEECCTTCGGGCEEEE
T ss_pred ECCCCCEeEEecccccccCCceEEEEEc-C-CCEEEEE-----cCCCcEEEEECCC---CcEEEEEcCCCCcccCceeEE
Confidence 99876543333 2 455679999999 5 5555532 3457899999987 5666555544 2445566
Q ss_pred EECCCCCeEEEEEEecccccCceeecce----------------------------------------------------
Q 013884 148 NWNRGSTGLLAVAQSDVDKTNQSYYGES---------------------------------------------------- 175 (434)
Q Consensus 148 ~ws~~G~~l~~~~~~~~d~~~~~~~g~~---------------------------------------------------- 175 (434)
.|+ ++..+++.. .|.....|.-..
T Consensus 305 ~~~-~~~~l~~~~---~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~ 380 (615)
T 1pgu_A 305 VAT-GNGRIISLS---LDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN 380 (615)
T ss_dssp EEE-ETTEEEEEE---TTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC
T ss_pred EeC-CCCeEEEEE---CCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE
Confidence 664 555554322 222222221110
Q ss_pred -------------eEEEEeeCC---------------------------------CceeeeecCCCCCeEEEEECcCCCE
Q 013884 176 -------------KLNYLTTDG---------------------------------THEGLVPLRKEGPVHDVQWSYSGSE 209 (434)
Q Consensus 176 -------------~l~~l~~~~---------------------------------~~~~~v~l~~~~~i~~~~wspdg~~ 209 (434)
.+..++... .......+....++.+++|+ ++.
T Consensus 381 ~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 458 (615)
T 1pgu_A 381 SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNY 458 (615)
T ss_dssp CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSE
T ss_pred CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCE
Confidence 000000000 00001111123455566666 555
Q ss_pred EEEEEccC-CCeEEEEeccceeE--EEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC-C--C
Q 013884 210 FAVVYGFM-PASATIFNKKCRPI--LEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-E--C 281 (434)
Q Consensus 210 ~av~~g~~-~~~i~l~d~~~~~~--~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~-~--~ 281 (434)
++ ++.. ++.+++||+....+ ..+ +...+++++|+|+|++|++++ .+|.|++||+.+++.+..+.+ | .
T Consensus 459 l~--~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~h~~~ 533 (615)
T 1pgu_A 459 VA--VGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGD---VMGKILLYDLQSREVKTSRWAFRTSK 533 (615)
T ss_dssp EE--EEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTTTEEEECCSCCCSSC
T ss_pred EE--EeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcC---CCCeEEEeeCCCCcceeEeecCCCCc
Confidence 55 3556 88999999976554 333 678899999999999999998 567999999999999988865 4 5
Q ss_pred ceEEEECC----------CCCEEEEEEcCCceeeCCcEEEEeecC--ceeeee--ecccceeeEEEcCCCCCCCC
Q 013884 282 SVTSEWSP----------DGRYFMTATTAPRLQIDNGIKIFHHNG--SLFFKK--MFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 282 ~~~~~wsp----------dg~~l~tas~~~rl~~D~~i~iw~~~g--~~~~~~--~~~~~~~~~w~p~~~~~~~~ 342 (434)
+..++|+| ||++|++++. |+.|+||++.. +++... +...+..+.|.|++. ++..
T Consensus 534 v~~~~~sp~~~~~~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~ 601 (615)
T 1pgu_A 534 INAISWKPAEKGANEEEIEEDLVATGSL------DTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSS 601 (615)
T ss_dssp EEEEEECCCC------CCSCCEEEEEET------TSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEE
T ss_pred eeEEEEcCccccccccccCCCEEEEEcC------CCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEe
Confidence 66799999 9999999999 99999999965 344432 456899999999998 7665
No 64
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.7e-26 Score=233.67 Aligned_cols=284 Identities=7% Similarity=0.040 Sum_probs=189.7
Q ss_pred cceEEecCCC---------cEEEEEecC--------------CCCCCCcEEEEEcCCCcEE----EEEeecCcCCCCCCe
Q 013884 2 LLLLTCLRVG---------LIIQTFQKS--------------STPQEKNVILWKTETGEAV----YQLFQKNMTKTTWPS 54 (434)
Q Consensus 2 V~~l~fSP~g---------~~L~t~~~~--------------~~~~d~~v~iWd~~~g~~~----~~~~~~~~~~~~~~~ 54 (434)
|++|+|+|++ +|||++... +++.|+.|+|||+.++++. ..+.++ ...+..
T Consensus 136 V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~---~~~V~~ 212 (524)
T 2j04_B 136 VTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHS---FGEVWD 212 (524)
T ss_dssp -CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEEC---CCSEEE
T ss_pred eeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEec---CCcEEE
Confidence 7899999997 899987632 2346899999999887642 223332 255668
Q ss_pred eeecCC------CcEEEEe-cCCeEEEEeCCCCCCc-----------eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCC
Q 013884 55 IRFSSD------EAVACRM-ATNEIQFFDTTDFPKG-----------ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGS 116 (434)
Q Consensus 55 ~~~S~d------~~~la~~-~~~~i~v~~~~~~~~~-----------~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~ 116 (434)
++|+|+ +.+||++ .|++|+|||+...... .....+...|.+++|+|+ + .++. ++.
T Consensus 213 v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~-~las-----gs~ 285 (524)
T 2j04_B 213 LKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-T-TVVC-----GFK 285 (524)
T ss_dssp EEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-S-EEEE-----EET
T ss_pred EEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-C-eEEE-----EeC
Confidence 999997 5788887 4679999999764321 112234467999999986 3 4543 456
Q ss_pred CceEEEEEcCCCCCCCceeeeeecccceeEE--EECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec-C
Q 013884 117 PASVQIYACGKDLQSQPLARRSFFRCSTVQL--NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-R 193 (434)
Q Consensus 117 ~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~--~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~ 193 (434)
+++|++|++... ..+......|...+.++ .|+++|..+++. +..|.+.+.|. + ... .+...+ .
T Consensus 286 DgtV~lWD~~~~--~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS--~S~D~tvklWD-------~--~~~-~~~~~~~~ 351 (524)
T 2j04_B 286 NGFVAEFDLTDP--EVPSFYDQVHDSYILSVSTAYSDFEDTVVST--VAVDGYFYIFN-------P--KDI-ATTKTTVS 351 (524)
T ss_dssp TSEEEEEETTBC--SSCSEEEECSSSCEEEEEEECCTTSCCEEEE--EETTSEEEEEC-------G--GGH-HHHCEEEE
T ss_pred CCEEEEEECCCC--CCceEEeecccccEEEEEEEcCCCCCeEEEE--eccCCeEEEEE-------C--CCC-Cccccccc
Confidence 789999999762 24455677788888888 678888443332 33566655443 2 111 111111 1
Q ss_pred --CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEE--EcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc
Q 013884 194 --KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPIL--ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 268 (434)
Q Consensus 194 --~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~--~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~ 268 (434)
..+.|.+++|+|++..|+ ++..++.|++||++. ..+. .-|.+.|++++|||+|++|++|+ .+|+|++||+
T Consensus 352 ~~~~~~v~~v~fsp~~~~l~--s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs---~Dgtv~lwd~ 426 (524)
T 2j04_B 352 RFRGSNLVPVVYCPQIYSYI--YSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGS---ADGSLIITNA 426 (524)
T ss_dssp ECSCCSCCCEEEETTTTEEE--EECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEE---TTTEEECCBS
T ss_pred ccccCcccceEeCCCcCeEE--EeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEE---CCCEEEEEec
Confidence 123578999999999877 567788999999864 3223 33889999999999999999998 5568988874
Q ss_pred cCC--------------------------------------------EEEEEeeCC--CceEEEECCCCC---EEEEEEc
Q 013884 269 VDG--------------------------------------------KQLGTTRAE--CSVTSEWSPDGR---YFMTATT 299 (434)
Q Consensus 269 ~~~--------------------------------------------~~i~~~~~~--~~~~~~wspdg~---~l~tas~ 299 (434)
..+ .++..+.+| .+..++|+|++. .|++|+.
T Consensus 427 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~ 506 (524)
T 2j04_B 427 ARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNS 506 (524)
T ss_dssp CSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECT
T ss_pred hHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhcc
Confidence 311 011112222 345599999965 8999988
Q ss_pred CCceeeCCcEEEEeecCceee
Q 013884 300 APRLQIDNGIKIFHHNGSLFF 320 (434)
Q Consensus 300 ~~rl~~D~~i~iw~~~g~~~~ 320 (434)
|+.||||++.++..+
T Consensus 507 ------~g~vrlw~l~~~~~~ 521 (524)
T 2j04_B 507 ------AGLLTLEYLSLEHHH 521 (524)
T ss_dssp ------TSEEEEEECSCC---
T ss_pred ------CceEEEEEccccccc
Confidence 999999999988644
No 65
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.95 E-value=2.2e-25 Score=213.80 Aligned_cols=270 Identities=12% Similarity=0.117 Sum_probs=193.9
Q ss_pred EEEEEeecCcCCCCCCeeee-----cC-CCcEEEEec-CCeEEEEeCCCCCC-------ceeeeeecCCeeEEEEeCCCC
Q 013884 38 AVYQLFQKNMTKTTWPSIRF-----SS-DEAVACRMA-TNEIQFFDTTDFPK-------GILYRLRVPGVAAFEVSKAPG 103 (434)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~-----S~-d~~~la~~~-~~~i~v~~~~~~~~-------~~~~~~~~~~v~~~~~sp~~~ 103 (434)
+...+.++ ...+.++.| ++ |+++|++++ |++|++|++..... ......|...|.+++|+|+ +
T Consensus 13 ~~~~l~gH---~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~-~ 88 (343)
T 2xzm_R 13 KRGILEGH---SDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE-N 88 (343)
T ss_dssp EEEEEECC---SSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS-T
T ss_pred eeeeeccc---hhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC-C
Confidence 34455554 367779999 77 999999985 67999999865321 1122345567999999998 4
Q ss_pred CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeC
Q 013884 104 SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD 183 (434)
Q Consensus 104 ~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~ 183 (434)
.+++. .+.++.|++|++.+ ++.+.....|...+..+.|+|+|+.|+.. ..|.+.+.| ++.
T Consensus 89 ~~l~s-----~s~D~~v~lwd~~~---~~~~~~~~~h~~~v~~v~~sp~~~~l~s~---~~d~~i~~w---------d~~ 148 (343)
T 2xzm_R 89 CFAIS-----SSWDKTLRLWDLRT---GTTYKRFVGHQSEVYSVAFSPDNRQILSA---GAEREIKLW---------NIL 148 (343)
T ss_dssp TEEEE-----EETTSEEEEEETTS---SCEEEEEECCCSCEEEEEECSSTTEEEEE---ETTSCEEEE---------ESS
T ss_pred CEEEE-----EcCCCcEEEEECCC---CcEEEEEcCCCCcEEEEEECCCCCEEEEE---cCCCEEEEE---------ecc
Confidence 55542 35678999999988 77788888899999999999999986543 245444433 222
Q ss_pred CCceeeee--cCCCCCeEEEEECcCC----------CEEEEEEccCCCeEEEEeccceeEEEc--CCcCeeEEEECCCCC
Q 013884 184 GTHEGLVP--LRKEGPVHDVQWSYSG----------SEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGK 249 (434)
Q Consensus 184 ~~~~~~v~--l~~~~~i~~~~wspdg----------~~~av~~g~~~~~i~l~d~~~~~~~~~--~~~~~~~i~~sP~g~ 249 (434)
+....... ..+...|.+++|+|++ ..|+ ++..|+.|++||.+......+ |...+++++|+|+|+
T Consensus 149 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~--s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~ 226 (343)
T 2xzm_R 149 GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFA--SVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGK 226 (343)
T ss_dssp SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEE--EEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSS
T ss_pred CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEE--EEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCC
Confidence 22111111 1346789999999987 5566 577899999999876665554 788999999999999
Q ss_pred eEEEEecCCCCCeEEEEEccC-CEEEEEe-eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eee--e---
Q 013884 250 FLCLAGFGNLPGDMAFWDYVD-GKQLGTT-RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFF--K--- 321 (434)
Q Consensus 250 ~l~~~~~~~~~g~i~iwd~~~-~~~i~~~-~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~-~~~--~--- 321 (434)
+|++++ .+|.|+|||+.+ ......+ ..+.+..++|+|++++|+++ . |++|+||++... ... .
T Consensus 227 ~l~sgs---~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~------d~~v~iw~~~~~~~~~~~~~~~ 296 (343)
T 2xzm_R 227 YIATGG---KDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-T------DQGVKIFNLMTQSKAPVCTIEA 296 (343)
T ss_dssp EEEEEE---TTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-E------SSCEEEEESSSCCSCSEEECCC
T ss_pred EEEEEc---CCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-C------CCCEEEEEeCCCCCCceEEeec
Confidence 999999 667999999843 3333333 23467779999999987654 5 889999998543 221 1
Q ss_pred ----------eecccceeeEEEcCCCCCCCCc
Q 013884 322 ----------KMFDKLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 322 ----------~~~~~~~~~~w~p~~~~~~~~~ 343 (434)
.+...+..++|+|++..++...
T Consensus 297 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~ 328 (343)
T 2xzm_R 297 EPITKAEGQKGKNPQCTSLAWNALGKKLFAGF 328 (343)
T ss_dssp CSGGGBTTBCCSCCCEEEEEECSSSCCEEEEE
T ss_pred CcchhhhhhcCCCCceEEEEECCCCCeEEEec
Confidence 1224578999999998887653
No 66
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.95 E-value=1.1e-25 Score=221.18 Aligned_cols=273 Identities=9% Similarity=0.084 Sum_probs=195.9
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCC
Q 013884 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFP 81 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~ 81 (434)
....|+|+|++|++++ .|+.|+|||+.+++.+..+..+ ...+.+++|+||+++|++++ +++|++||+....
T Consensus 101 ~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~ 172 (420)
T 3vl1_A 101 AVDTAKLQMRRFILGT-----TEGDIKVLDSNFNLQREIDQAH---VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS 172 (420)
T ss_dssp EEEEECSSSCEEEEEE-----TTSCEEEECTTSCEEEEETTSS---SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred EEEEEecCCCEEEEEE-----CCCCEEEEeCCCcceeeecccc---cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc
Confidence 4557999999999998 8999999999999877665443 36778999999999999885 6799999998876
Q ss_pred CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec---------------------
Q 013884 82 KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF--------------------- 140 (434)
Q Consensus 82 ~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~--------------------- 140 (434)
.......+...|.+++|+|+ +..++. .+.++.|++|++.+ .+.+.....+
T Consensus 173 ~~~~~~~h~~~v~~~~~~~~-~~~l~s-----~~~d~~v~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 243 (420)
T 3vl1_A 173 NPRTLIGHRATVTDIAIIDR-GRNVLS-----ASLDGTIRLWECGT---GTTIHTFNRKENPHDGVNSIALFVGTDRQLH 243 (420)
T ss_dssp CCEEEECCSSCEEEEEEETT-TTEEEE-----EETTSCEEEEETTT---TEEEEEECBTTBTTCCEEEEEEEECCCSSCG
T ss_pred CceEEcCCCCcEEEEEEcCC-CCEEEE-----EcCCCcEEEeECCC---CceeEEeecCCCCCCCccEEEEecCCcceee
Confidence 55555566778999999998 455543 24567899999987 5555544332
Q ss_pred ---ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCc-eeeeecCCCCCeEEEEECcCCC-EEEEEEc
Q 013884 141 ---RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSYSGS-EFAVVYG 215 (434)
Q Consensus 141 ---~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~~~~i~~~~wspdg~-~~av~~g 215 (434)
...+..+.|+|+|+.|++.. .|.. ++.+++.... ...+...+...|.+++|+|+++ .|+ +|
T Consensus 244 ~~~~~~v~~~~~s~~~~~l~~~~---~dg~---------i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~--~g 309 (420)
T 3vl1_A 244 EISTSKKNNLEFGTYGKYVIAGH---VSGV---------ITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIY--AG 309 (420)
T ss_dssp GGCCCCCCTTCSSCTTEEEEEEE---TTSC---------EEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEE--EE
T ss_pred ecccCcccceEEcCCCCEEEEEc---CCCe---------EEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEE--EE
Confidence 23444567789998865532 3333 3333333322 1222223568999999999999 666 57
Q ss_pred cCCCeEEEEeccce--eEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC---EE--------EEEeeC
Q 013884 216 FMPASATIFNKKCR--PILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG---KQ--------LGTTRA 279 (434)
Q Consensus 216 ~~~~~i~l~d~~~~--~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~---~~--------i~~~~~ 279 (434)
..++.|.+||++.. ++..+ +...++++.| |+|++|++++ .+|.|++||+.+. +. ......
T Consensus 310 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~---~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 385 (420)
T 3vl1_A 310 YENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSG---FDTSIKLDIISDPESERPAIEFETPTFLVSND 385 (420)
T ss_dssp ETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEET---TTEEEEEEEECCTTCCSCEECTTSCEEECCSS
T ss_pred eCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEec---CCccEEEEeccCCCCCccceeccCccEEccCC
Confidence 78999999999642 23333 5677777755 5788999988 5679999998762 11 111112
Q ss_pred CCceEEEECCCCC---EEEEEEcCCceeeCCcEEEEeecC
Q 013884 280 ECSVTSEWSPDGR---YFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 280 ~~~~~~~wspdg~---~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
..+..++|+|||. .|++++. ++.+.+|+++.
T Consensus 386 ~~v~~~~~s~~~~~~g~l~a~g~------~g~~~~~~~~~ 419 (420)
T 3vl1_A 386 DAVSQFCYVSDDESNGEVLEVGK------NNFCALYNLSN 419 (420)
T ss_dssp CCCCEEEEECCSSSSCEEEEEET------TTEEEEEESCC
T ss_pred cceEEEEEccCCCCcceEEEEcC------CceEEEEeccC
Confidence 2566799999999 7888888 89999999753
No 67
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.95 E-value=4.8e-26 Score=215.98 Aligned_cols=252 Identities=12% Similarity=0.119 Sum_probs=177.0
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc--EEEEEeecCcCCCCCCeeeecC--CCcEEEEec-CCeEEEEe
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE--AVYQLFQKNMTKTTWPSIRFSS--DEAVACRMA-TNEIQFFD 76 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~--~~~~~~~~~~~~~~~~~~~~S~--d~~~la~~~-~~~i~v~~ 76 (434)
|++++|||+|++|+|++ .|++|+|||+.++. .+..+..+ ...+.+++|++ ++++|++++ |++|++||
T Consensus 16 V~~v~~s~~g~~lasgs-----~D~~v~lwd~~~~~~~~~~~l~gH---~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 16 IHDAQMDYYGTRLATCS-----SDRSVKIFDVRNGGQILIADLRGH---EGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp EEEEEECGGGCEEEEEE-----TTTEEEEEEEETTEEEEEEEEECC---SSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred EEEeeEcCCCCEEEEEe-----CCCeEEEEEecCCCcEEEEEEcCC---CccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 78999999999999999 89999999998875 35566554 36777999986 488888884 68999999
Q ss_pred CCCCCCcee--eeeecCCeeEEEEeCCC-CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCC
Q 013884 77 TTDFPKGIL--YRLRVPGVAAFEVSKAP-GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGS 153 (434)
Q Consensus 77 ~~~~~~~~~--~~~~~~~v~~~~~sp~~-~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G 153 (434)
+........ ...|...|.+++|+|+. +.+++. .+.++.|++|++..............|...+..+.|+|++
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~las-----gs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 162 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILAC-----GSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAV 162 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEE-----ECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCC
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEE-----EcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcccc
Confidence 876432122 22355679999999974 345553 3567899999987621001122333455566677788764
Q ss_pred CeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc----e
Q 013884 154 TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC----R 229 (434)
Q Consensus 154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~----~ 229 (434)
..-.++. ...+. ..++++.|+ +|..|+.|++||++. .
T Consensus 163 ~~~~~~~--------------------~~~~~-----------------~~~~~~~l~--sgs~D~~v~lWd~~~~~~~~ 203 (316)
T 3bg1_A 163 VPGSLID--------------------HPSGQ-----------------KPNYIKRFA--SGGCDNLIKLWKEEEDGQWK 203 (316)
T ss_dssp CC--------------------------CCSC-----------------CCCCCCBEE--CCBTTSBCCEEEECTTSCEE
T ss_pred CCccccc--------------------ccccc-----------------CccccceEE--EecCCCeEEEEEeCCCCccc
Confidence 3100000 00000 012345666 688899999999863 2
Q ss_pred eEEEc--CCcCeeEEEECCCC----CeEEEEecCCCCCeEEEEEccCC-------EEEEEeeCCCceEEEECCCCCEEEE
Q 013884 230 PILEL--GSGPYNTVRWNPKG----KFLCLAGFGNLPGDMAFWDYVDG-------KQLGTTRAECSVTSEWSPDGRYFMT 296 (434)
Q Consensus 230 ~~~~~--~~~~~~~i~~sP~g----~~l~~~~~~~~~g~i~iwd~~~~-------~~i~~~~~~~~~~~~wspdg~~l~t 296 (434)
.+..+ |...+++++|+|++ ++|++++ .+|+|+|||+.+. +.+..+ ...+..++|+|+|++|++
T Consensus 204 ~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s---~D~~v~iw~~~~~~~~~~~~~~~~~~-~~~v~~v~~sp~g~~las 279 (316)
T 3bg1_A 204 EEQKLEAHSDWVRDVAWAPSIGLPTSTIASCS---QDGRVFIWTCDDASSNTWSPKLLHKF-NDVVWHVSWSITANILAV 279 (316)
T ss_dssp EEECCBCCSSCEEEEECCCCSSCSCCEEEEEE---TTCEEEEEECSSTTCCCCBCCEEEEC-SSCEEEEEECTTTCCEEE
T ss_pred eeeecccCCCceEEEEecCCCCCCCceEEEEc---CCCeEEEEEccCccccchhhhhhhcC-CCcEEEEEEcCCCCEEEE
Confidence 34444 78899999999997 7899998 5679999998762 223222 235677999999999999
Q ss_pred EEcCCceeeCCcEEEEeec
Q 013884 297 ATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 297 as~~~rl~~D~~i~iw~~~ 315 (434)
++. |+.|+||+..
T Consensus 280 ~~~------D~~v~lw~~~ 292 (316)
T 3bg1_A 280 SGG------DNKVTLWKES 292 (316)
T ss_dssp EES------SSCEEEEEEC
T ss_pred EcC------CCeEEEEEEC
Confidence 999 9999999974
No 68
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.95 E-value=1.6e-24 Score=216.04 Aligned_cols=288 Identities=11% Similarity=0.125 Sum_probs=205.0
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~ 80 (434)
+.++.| ++++|++++ .|+.|+|||+.+++.+..+..+. ..+.+++|++++ +++++ .|++|++||+.+.
T Consensus 125 ~~~~~~--~~~~l~sgs-----~dg~i~vwd~~~~~~~~~~~~h~---~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~ 193 (464)
T 3v7d_B 125 ITCLQF--EDNYVITGA-----DDKMIRVYDSINKKFLLQLSGHD---GGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG 193 (464)
T ss_dssp EEEEEE--ETTEEEEEE-----TTSCEEEEETTTTEEEEEECCCS---SCEEEEEECSTT-EEEEEETTSCEEEEETTTT
T ss_pred EEEEEE--CCCEEEEEc-----CCCcEEEEECCCCcEEEEEeCCC---cCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC
Confidence 345555 678999999 89999999999999998887644 677799999999 55555 6789999999876
Q ss_pred CCceeeeeecCCeeEEEEeCCCC-CeEEEEecCCCCCCceEEEEEcCCCCCCC--------------------ceeeeee
Q 013884 81 PKGILYRLRVPGVAAFEVSKAPG-SHVAVFVPESKGSPASVQIYACGKDLQSQ--------------------PLARRSF 139 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~-~~ia~~~~~~~~~~~~v~i~~~~~~~~~~--------------------~i~~~~~ 139 (434)
........+...|..+.|++..+ ..+++ ++.++.|++|++....... .+.....
T Consensus 194 ~~~~~~~~h~~~v~~l~~~~~~~~~~l~s-----~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
T 3v7d_B 194 CCTHVFEGHNSTVRCLDIVEYKNIKYIVT-----GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268 (464)
T ss_dssp EEEEEECCCSSCEEEEEEEESSSCEEEEE-----EETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred cEEEEECCCCCccEEEEEecCCCCCEEEE-----EcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence 54344445667899999996433 44443 2456789999998632100 0223333
Q ss_pred cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC
Q 013884 140 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA 219 (434)
Q Consensus 140 ~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~ 219 (434)
+...+..+ +++|+.+++.. .|.. +..+++...........+...|.+++|+|+++.++ +|..++
T Consensus 269 ~~~~v~~~--~~~~~~l~~~~---~d~~---------i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--sg~~dg 332 (464)
T 3v7d_B 269 HMASVRTV--SGHGNIVVSGS---YDNT---------LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI--SASMDT 332 (464)
T ss_dssp CSSCEEEE--EEETTEEEEEE---TTSC---------EEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEE--EEETTS
T ss_pred ccceEEEE--cCCCCEEEEEe---CCCe---------EEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEE--EEeCCC
Confidence 44444444 56777765432 3333 33333333322222223578999999999999988 578899
Q ss_pred eEEEEecc-ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEE
Q 013884 220 SATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFM 295 (434)
Q Consensus 220 ~i~l~d~~-~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~ 295 (434)
.|++||++ +..+..+ |...+.++.|+ +++|++++ .+|.|++||+.+++........ .+..++|+|+|++|+
T Consensus 333 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s---~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 407 (464)
T 3v7d_B 333 TIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAA---ADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILV 407 (464)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEE---TTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEE
T ss_pred cEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEe---CCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEE
Confidence 99999995 5555555 78889999998 58999998 5679999999988766665544 455589999999998
Q ss_pred EEEcCCceeeCCcEEEEee-cCceeeee---ecccceeeEEE
Q 013884 296 TATTAPRLQIDNGIKIFHH-NGSLFFKK---MFDKLFQAEWK 333 (434)
Q Consensus 296 tas~~~rl~~D~~i~iw~~-~g~~~~~~---~~~~~~~~~w~ 333 (434)
+++ |+.|+|||+ +|+++... +...++.+.|+
T Consensus 408 ~~~-------dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~ 442 (464)
T 3v7d_B 408 SGS-------ENQFNIYNLRSGKLVHANILKDADQIWSVNFK 442 (464)
T ss_dssp EEE-------TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE
T ss_pred Eec-------CCeEEEEECCCCcEEehhhccCCCcEEEEEec
Confidence 876 789999998 56666542 34578899997
No 69
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.94 E-value=3e-24 Score=203.87 Aligned_cols=267 Identities=13% Similarity=0.164 Sum_probs=198.1
Q ss_pred EEEeecCcCCCCCCeeeecCCC-cEEEEec-CCeEEEEeCCCCCCc-----eeeeeecCCeeEEEEeCCCCCeEEEEecC
Q 013884 40 YQLFQKNMTKTTWPSIRFSSDE-AVACRMA-TNEIQFFDTTDFPKG-----ILYRLRVPGVAAFEVSKAPGSHVAVFVPE 112 (434)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~S~d~-~~la~~~-~~~i~v~~~~~~~~~-----~~~~~~~~~v~~~~~sp~~~~~ia~~~~~ 112 (434)
.++.+ |...+.+++|+|++ ++|++++ |++|++|++...... .....|...|..+.|+|+ +.+++.
T Consensus 11 ~~l~g---H~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~d-g~~l~s---- 82 (319)
T 3frx_A 11 GTLEG---HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD-GAYALS---- 82 (319)
T ss_dssp EEECC---CSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTT-SSEEEE----
T ss_pred EEEcc---ccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCC-CCEEEE----
Confidence 44544 44778899999965 7888874 679999998643221 123345668999999998 455543
Q ss_pred CCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec
Q 013884 113 SKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL 192 (434)
Q Consensus 113 ~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l 192 (434)
.+.++.|++|++.+ ++.+.....|...+..+.|+|+|..|+.. ..|.+.+.|. +.+. ......
T Consensus 83 -~s~D~~v~~wd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~---s~D~~i~vwd---------~~~~-~~~~~~ 145 (319)
T 3frx_A 83 -ASWDKTLRLWDVAT---GETYQRFVGHKSDVMSVDIDKKASMIISG---SRDKTIKVWT---------IKGQ-CLATLL 145 (319)
T ss_dssp -EETTSEEEEEETTT---TEEEEEEECCSSCEEEEEECTTSCEEEEE---ETTSCEEEEE---------TTSC-EEEEEC
T ss_pred -EeCCCEEEEEECCC---CCeeEEEccCCCcEEEEEEcCCCCEEEEE---eCCCeEEEEE---------CCCC-eEEEEe
Confidence 35678999999988 77888888899999999999999976543 3555555332 2222 222223
Q ss_pred CCCCCeEEEEECcCCC------EEEEEEccCCCeEEEEeccc-eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeE
Q 013884 193 RKEGPVHDVQWSYSGS------EFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDM 263 (434)
Q Consensus 193 ~~~~~i~~~~wspdg~------~~av~~g~~~~~i~l~d~~~-~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i 263 (434)
.+...|.+++|+|++. .++ ++..|+.|++||++. .....+ |...+++++|+|+|++|++++ .+|.|
T Consensus 146 ~h~~~v~~~~~~~~~~~~~~~~~l~--s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~---~dg~i 220 (319)
T 3frx_A 146 GHNDWVSQVRVVPNEKADDDSVTII--SAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG---KDGEI 220 (319)
T ss_dssp CCSSCEEEEEECCC------CCEEE--EEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEE---TTCEE
T ss_pred ccCCcEEEEEEccCCCCCCCccEEE--EEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEe---CCCeE
Confidence 4578999999999643 455 688899999999964 333344 788999999999999999999 56799
Q ss_pred EEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee-----------ecccceeeE
Q 013884 264 AFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK-----------MFDKLFQAE 331 (434)
Q Consensus 264 ~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~-----------~~~~~~~~~ 331 (434)
+|||+.+++.+..+..+ .+..++|+|||.+|++++ +++++||+++...+... ....+..++
T Consensus 221 ~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~-------~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 293 (319)
T 3frx_A 221 MLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAAT-------ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLA 293 (319)
T ss_dssp EEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEE-------TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEE
T ss_pred EEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEc-------CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEE
Confidence 99999999988888776 556699999999998876 56799999976543321 123467899
Q ss_pred EEcCCCCCCCCc
Q 013884 332 WKPVSPDKFGDI 343 (434)
Q Consensus 332 w~p~~~~~~~~~ 343 (434)
|+|++..++...
T Consensus 294 ~spdg~~l~sg~ 305 (319)
T 3frx_A 294 WSADGQTLFAGY 305 (319)
T ss_dssp ECTTSSEEEEEE
T ss_pred ECCCCCEEEEee
Confidence 999998887653
No 70
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.94 E-value=7.3e-25 Score=208.78 Aligned_cols=268 Identities=10% Similarity=0.070 Sum_probs=193.8
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc---EEEEEeecCcCCCCCCeeeecCCCc-EEEEec-CCeEEEEe
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE---AVYQLFQKNMTKTTWPSIRFSSDEA-VACRMA-TNEIQFFD 76 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~---~~~~~~~~~~~~~~~~~~~~S~d~~-~la~~~-~~~i~v~~ 76 (434)
|++++|||+|++|++++ .|+.|+|||+.+++ .+..+..+ ...+.++.|+||++ +|+++. ++.|++|+
T Consensus 14 v~~~~~s~~~~~l~~~~-----~d~~v~iw~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 14 ISDIKIIPSKSLLLITS-----WDGSLTVYKFDIQAKNVDLLQSLRY---KHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp EEEEEEEGGGTEEEEEE-----TTSEEEEEEEETTTTEEEEEEEEEC---SSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred EEEEEEcCCCCEEEEEc-----CCCeEEEEEeCCCCccccceeeeec---CCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 78999999999999998 89999999998887 23333333 36777999999999 888874 68999999
Q ss_pred C-CCCCCceeeee--ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC------CCceeeeeecccceeEE
Q 013884 77 T-TDFPKGILYRL--RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ------SQPLARRSFFRCSTVQL 147 (434)
Q Consensus 77 ~-~~~~~~~~~~~--~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~------~~~i~~~~~~~~~~~~~ 147 (434)
+ ..... ..... +...|..+.|+| +..+++ .+.++.|++|++..... .+++.... +...+..+
T Consensus 86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~--~~~l~s-----~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~ 156 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEANLGICRICKYG--DDKLIA-----ASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTM 156 (342)
T ss_dssp SSSSSSE-EECBSCCCCSCEEEEEEET--TTEEEE-----EETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEE
T ss_pred eccCCce-EeccccCCCCceEEEEeCC--CCEEEE-----EcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEE
Confidence 9 76543 33444 666799999999 344443 24567999999865100 11222333 66778899
Q ss_pred EECCCCCeEEEEEEecccccCceeecceeEEEEeeCC-C--ceeeeecCCCCCeEEEEECc-CCCEEEEEEccCCCeEEE
Q 013884 148 NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG-T--HEGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMPASATI 223 (434)
Q Consensus 148 ~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~-~--~~~~v~l~~~~~i~~~~wsp-dg~~~av~~g~~~~~i~l 223 (434)
.|++++ +++. . .|.. ++.++... . ........+...|.+++|+| +++.|+ ++..++.+.+
T Consensus 157 ~~~~~~--l~~~-~--~d~~---------i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~--~~~~dg~i~i 220 (342)
T 1yfq_A 157 DTNSSR--LIVG-M--NNSQ---------VQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYA--CSSIDGRVAV 220 (342)
T ss_dssp EECSSE--EEEE-E--STTE---------EEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEE--EEETTSEEEE
T ss_pred EecCCc--EEEE-e--CCCe---------EEEEECCccccccceeeecCCCCceeEEEECCCCCCEEE--EEecCCcEEE
Confidence 999987 3332 1 2222 33344333 1 12223444578999999999 999888 4677899999
Q ss_pred Eeccc-------eeEEEc--CCc---------CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-C--c
Q 013884 224 FNKKC-------RPILEL--GSG---------PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-C--S 282 (434)
Q Consensus 224 ~d~~~-------~~~~~~--~~~---------~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~--~ 282 (434)
||.+. ..+..+ +.. .+++++|+|+|++|++++ .+|.|++||+.+++.+..+..+ . +
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~h~~~v 297 (342)
T 1yfq_A 221 EFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG---SDGIISCWNLQTRKKIKNFAKFNEDSV 297 (342)
T ss_dssp EECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE---TTSCEEEEETTTTEEEEECCCCSSSEE
T ss_pred EEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEec---CCceEEEEcCccHhHhhhhhcccCCCc
Confidence 98853 333333 433 899999999999999998 5679999999999999988865 3 3
Q ss_pred eEEEECCCCCEEEEEEcCCceeeCCc-EEEEe
Q 013884 283 VTSEWSPDGRYFMTATTAPRLQIDNG-IKIFH 313 (434)
Q Consensus 283 ~~~~wspdg~~l~tas~~~rl~~D~~-i~iw~ 313 (434)
..++ |||++|++++. |+. .+.|.
T Consensus 298 ~~~~--~~~~~l~s~s~------Dg~~~~~~~ 321 (342)
T 1yfq_A 298 VKIA--CSDNILCLATS------DDTFKTNAA 321 (342)
T ss_dssp EEEE--ECSSEEEEEEE------CTHHHHCSS
T ss_pred eEec--CCCCeEEEEec------CCccccccc
Confidence 3466 99999999999 887 44333
No 71
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.5e-24 Score=205.57 Aligned_cols=270 Identities=9% Similarity=0.101 Sum_probs=199.7
Q ss_pred CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884 48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
|...+.+++|+||+++|+++. ++.|++||+.+.........+...|.+++|+|+ +..+++ .+.++.|++|++.
T Consensus 31 h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s-----~~~dg~i~iwd~~ 104 (369)
T 3zwl_B 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCF-TKYCVT-----GSADYSIKLWDVS 104 (369)
T ss_dssp CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTT-SSEEEE-----EETTTEEEEEETT
T ss_pred eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCC-CCEEEE-----EeCCCeEEEEECC
Confidence 347788999999999999985 679999999876654444456678999999998 455543 2446799999998
Q ss_pred CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCcee---------eeecCCCC-
Q 013884 127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG---------LVPLRKEG- 196 (434)
Q Consensus 127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~---------~v~l~~~~- 196 (434)
+ .+.+.... +...+..+.|+|+|+.+++...... ...|...+|.+........ .....+.+
T Consensus 105 ~---~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~-----~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (369)
T 3zwl_B 105 N---GQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVM-----KNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL 175 (369)
T ss_dssp T---CCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBT-----TBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred C---CcEEEEee-cCCCeEEEEEccCCCEEEEecCCcc-----CCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence 7 66666665 7778899999999998776532100 0012222344333221100 00111223
Q ss_pred -CeEEEEECcCCCEEEEEEccCCCeEEEEeccc--eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013884 197 -PVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 271 (434)
Q Consensus 197 -~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~--~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~ 271 (434)
.+.+++|+|+++.|+ ++..++.|.+||++. ..+..+ +...+.+++|+|+|++|++++ .+|.|.+||+.++
T Consensus 176 ~~~~~~~~~~~~~~l~--~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 176 DAATVAGWSTKGKYII--AGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS---RDTNSFLVDVSTL 250 (369)
T ss_dssp CCEEEEEECGGGCEEE--EEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTTC
T ss_pred cceeEEEEcCCCCEEE--EEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec---CCceEEEEECCCC
Confidence 899999999999888 467789999999974 444444 788999999999999999998 5679999999999
Q ss_pred EEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCC--------------cEEEEeec-Cceeeee--ecccceeeEEE
Q 013884 272 KQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDN--------------GIKIFHHN-GSLFFKK--MFDKLFQAEWK 333 (434)
Q Consensus 272 ~~i~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~--------------~i~iw~~~-g~~~~~~--~~~~~~~~~w~ 333 (434)
+.+..+... .+..++|+|+|+++++++. ++ .+++|+.. ++.+... +...+..+.|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 324 (369)
T 3zwl_B 251 QVLKKYETDCPLNTAVITPLKEFIILGGG------QEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAIS 324 (369)
T ss_dssp CEEEEEECSSCEEEEEECSSSSEEEEEEC------CC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred ceeeeecCCCCceeEEecCCCceEEEeec------CCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEEC
Confidence 888888765 5566999999999999998 66 79999984 4444433 45679999999
Q ss_pred cCCCCCCCCc
Q 013884 334 PVSPDKFGDI 343 (434)
Q Consensus 334 p~~~~~~~~~ 343 (434)
|++..++...
T Consensus 325 ~~~~~l~s~~ 334 (369)
T 3zwl_B 325 PQGTSYASGG 334 (369)
T ss_dssp TTSSEEEEEE
T ss_pred CCCCEEEEEc
Confidence 9988777653
No 72
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.6e-25 Score=241.08 Aligned_cols=220 Identities=11% Similarity=0.079 Sum_probs=150.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~ 80 (434)
|++|+|||+|++||+++ .|+.|+||+..+++.+..+. +...+.+++|+| |++|+++ .|++|+|||+...
T Consensus 20 V~~lafspdg~~lAsgs-----~Dg~I~lw~~~~~~~~~~~~----~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~ 89 (902)
T 2oaj_A 20 PIAAAFDFTQNLLAIAT-----VTGEVHIYGQQQVEVVIKLE----DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ 89 (902)
T ss_dssp EEEEEEETTTTEEEEEE-----TTSEEEEECSTTCEEEEECS----SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC
T ss_pred cEEEEECCCCCEEEEEe-----CCCEEEEEeCCCcEEEEEcC----CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC
Confidence 78999999999999999 89999999998887655543 236677999999 8888877 5689999999875
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCce-----------eeeeecccceeEEEE
Q 013884 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPL-----------ARRSFFRCSTVQLNW 149 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i-----------~~~~~~~~~~~~~~w 149 (434)
....... +...|.+++|+|+ +.++++ +..++.|++|++.. .... .....|...+.++.|
T Consensus 90 ~~~~~~~-~~~~V~~v~~sp~-g~~l~s-----gs~dg~V~lwd~~~---~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~ 159 (902)
T 2oaj_A 90 KVLTTVF-VPGKITSIDTDAS-LDWMLI-----GLQNGSMIVYDIDR---DQLSSFKLDNLQKSSFFPAARLSPIVSIQW 159 (902)
T ss_dssp SEEEEEE-CSSCEEEEECCTT-CSEEEE-----EETTSCEEEEETTT---TEEEEEEECCHHHHHTCSSSCCCCCCEEEE
T ss_pred cEEEEEc-CCCCEEEEEECCC-CCEEEE-----EcCCCcEEEEECCC---CccccceeccccccccccccCCCCeEEEEE
Confidence 5322222 3457999999998 455543 34567899999976 3322 112345678889999
Q ss_pred CCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC-------------------CCCCeEEEEECcCCCEE
Q 013884 150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-------------------KEGPVHDVQWSYSGSEF 210 (434)
Q Consensus 150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-------------------~~~~i~~~~wspdg~~~ 210 (434)
+|++..+++.+. .|... .| ++... .....+. +...|.+++|+|+|+.|
T Consensus 160 sp~~~~~l~~g~--~dg~v-lW---------d~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~l 226 (902)
T 2oaj_A 160 NPRDIGTVLISY--EYVTL-TY---------SLVEN-EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHI 226 (902)
T ss_dssp ETTEEEEEEEEC--SSCEE-EE---------ETTTT-EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEE
T ss_pred ccCCCCEEEEEe--CCCcE-EE---------ECCCC-ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEE
Confidence 997654444332 33333 33 22221 1111111 13679999999999998
Q ss_pred EEEEccCCCeEEEEeccc-eeEEE--c-----C-------------CcCeeEEEEC----CCC-CeEEEEec
Q 013884 211 AVVYGFMPASATIFNKKC-RPILE--L-----G-------------SGPYNTVRWN----PKG-KFLCLAGF 256 (434)
Q Consensus 211 av~~g~~~~~i~l~d~~~-~~~~~--~-----~-------------~~~~~~i~~s----P~g-~~l~~~~~ 256 (434)
+ +++.|+.|++||++. +.+.. + + ..++++++|+ |++ .+|++++.
T Consensus 227 a--sgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~ 296 (902)
T 2oaj_A 227 I--TIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS 296 (902)
T ss_dssp E--EEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred E--EEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence 8 678899999999963 43331 2 2 3368999994 554 45555543
No 73
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.94 E-value=7.4e-24 Score=206.09 Aligned_cols=272 Identities=11% Similarity=0.082 Sum_probs=195.3
Q ss_pred EEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEE-EEe-cCCeEEEEeCCCCCCceeeeeec
Q 013884 13 IIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVA-CRM-ATNEIQFFDTTDFPKGILYRLRV 90 (434)
Q Consensus 13 ~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~l-a~~-~~~~i~v~~~~~~~~~~~~~~~~ 90 (434)
.+++.+ .|+.|++||+.+++++..+..+ ..+.+++|+||++++ +++ .+++|++||............ .
T Consensus 4 l~vs~~-----~d~~v~v~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~-~ 73 (391)
T 1l0q_A 4 AYIANS-----ESDNISVIDVTSNKVTATIPVG----SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA-G 73 (391)
T ss_dssp EEEEET-----TTTEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC-S
T ss_pred EEEEcC-----CCCEEEEEECCCCeEEEEeecC----CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC-C
Confidence 445555 7899999999999998887765 335599999999977 444 578999999977543222222 3
Q ss_pred CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCce
Q 013884 91 PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQS 170 (434)
Q Consensus 91 ~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~ 170 (434)
..+..++|+|++ ..+++. ....+.|++|++.. ++.+..... ......+.|+|+|+.|++... .+.
T Consensus 74 ~~v~~~~~spdg-~~l~~~----~~~~~~v~v~d~~~---~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~--~~~---- 138 (391)
T 1l0q_A 74 SSPQGVAVSPDG-KQVYVT----NMASSTLSVIDTTS---NTVAGTVKT-GKSPLGLALSPDGKKLYVTNN--GDK---- 138 (391)
T ss_dssp SSEEEEEECTTS-SEEEEE----ETTTTEEEEEETTT---TEEEEEEEC-SSSEEEEEECTTSSEEEEEET--TTT----
T ss_pred CCccceEECCCC-CEEEEE----ECCCCEEEEEECCC---CeEEEEEeC-CCCcceEEECCCCCEEEEEeC--CCC----
Confidence 378999999984 444332 23347899999987 555555443 346688999999998766432 121
Q ss_pred eecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee-EEEc-CCcCeeEEEECCCC
Q 013884 171 YYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILEL-GSGPYNTVRWNPKG 248 (434)
Q Consensus 171 ~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~-~~~~-~~~~~~~i~~sP~g 248 (434)
.++.++.... .....+.....+..++|+|+|+.+++ ++..++.+.+||++... +..+ +...+..++|+|+|
T Consensus 139 -----~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~dg~~l~~-~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g 211 (391)
T 1l0q_A 139 -----TVSVINTVTK-AVINTVSVGRSPKGIAVTPDGTKVYV-ANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEG 211 (391)
T ss_dssp -----EEEEEETTTT-EEEEEEECCSSEEEEEECTTSSEEEE-EETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTS
T ss_pred -----EEEEEECCCC-cEEEEEecCCCcceEEECCCCCEEEE-EeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCC
Confidence 3555555443 22233333567799999999998866 46778899999997543 3333 45678899999999
Q ss_pred CeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeee
Q 013884 249 KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK 321 (434)
Q Consensus 249 ~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~ 321 (434)
++|++++.+..++.|.+||+.+++.+..+..+ .+..++|+|||++|++++.. |+.|++||+. |+++..
T Consensus 212 ~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~-----d~~v~v~d~~~~~~~~~ 281 (391)
T 1l0q_A 212 TKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSF-----XNTVSVIDTATNTITAT 281 (391)
T ss_dssp SEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETT-----TTEEEEEETTTTEEEEE
T ss_pred CEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCC-----CCEEEEEECCCCcEEEE
Confidence 99998875334579999999999888888766 55569999999998655433 9999999995 554443
No 74
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.94 E-value=5.9e-25 Score=208.61 Aligned_cols=280 Identities=11% Similarity=0.119 Sum_probs=175.1
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc----EEEEEeecCcCCCCCCeeeecC--CCcEEEEec-CCeEEE
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE----AVYQLFQKNMTKTTWPSIRFSS--DEAVACRMA-TNEIQF 74 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~----~~~~~~~~~~~~~~~~~~~~S~--d~~~la~~~-~~~i~v 74 (434)
|++|+|||+|++|++++ .|+.|+|||+.++. .+..+..+ ...+.+++|+| |+++|++++ |+.|++
T Consensus 14 v~~~~~~~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 14 VHDVVYDFYGRHVATCS-----SDQHIKVFKLDKDTSNWELSDSWRAH---DSSIVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp EEEEEECSSSSEEEEEE-----TTSEEEEEEECSSSCCEEEEEEEECC---SSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred eeEEEEcCCCCEEEEee-----CCCeEEEEECCCCCCcceecceeccC---CCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 78999999999999999 89999999998773 45555543 36777999999 699998885 679999
Q ss_pred EeCCCCCC---------ceeeeeecCCeeEEEEeCCC-CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee------
Q 013884 75 FDTTDFPK---------GILYRLRVPGVAAFEVSKAP-GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS------ 138 (434)
Q Consensus 75 ~~~~~~~~---------~~~~~~~~~~v~~~~~sp~~-~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~------ 138 (434)
||+..... ......+...|.+++|+|+. +..+++ .+.++.|++|++.. ...+....
T Consensus 86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-----~~~dg~v~iwd~~~---~~~~~~~~~~~~~~ 157 (351)
T 3f3f_A 86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLAC-----LGNDGILRLYDALE---PSDLRSWTLTSEMK 157 (351)
T ss_dssp EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEE-----EETTCEEEEEECSS---TTCTTCCEEEEEEE
T ss_pred EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEE-----ecCCCcEEEecCCC---hHHhcccccccccc
Confidence 99876431 12222345679999999983 233433 24567999999987 33332221
Q ss_pred -------ecccceeEEEECCC---CCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcCC
Q 013884 139 -------FFRCSTVQLNWNRG---STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSG 207 (434)
Q Consensus 139 -------~~~~~~~~~~ws~~---G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspdg 207 (434)
.+...+..+.|+|+ +..+++.. .+... ++.....+.......+ .+.++|.+++|+|++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~~~--------~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~ 226 (351)
T 3f3f_A 158 VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSA---LEQAI--------IYQRGKDGKLHVAAKLPGHKSLIRSISWAPSI 226 (351)
T ss_dssp SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEE---TTEEE--------EEEECTTSCEEEEEECCCCCSCEEEEEECCCS
T ss_pred ccccccCCcccceeEEEeccCCCCCcEEEEec---CCCcE--------EEEccCCCceeeeeecCCCCcceeEEEECCCC
Confidence 34567789999997 77655432 22111 1221112211112223 257899999999998
Q ss_pred ----CEEEEEEccCCCeEEEEeccceeEE-Ec--CCcCeeEEEECCCCCeEEEEecC-CCCCeEEEEEccCCEEEEEeeC
Q 013884 208 ----SEFAVVYGFMPASATIFNKKCRPIL-EL--GSGPYNTVRWNPKGKFLCLAGFG-NLPGDMAFWDYVDGKQLGTTRA 279 (434)
Q Consensus 208 ----~~~av~~g~~~~~i~l~d~~~~~~~-~~--~~~~~~~i~~sP~g~~l~~~~~~-~~~g~i~iwd~~~~~~i~~~~~ 279 (434)
+.|+ ++..|+.|++||++..... .. .........+++....++.+... +....+.+|+..+.+.+..+.+
T Consensus 227 ~~~~~~l~--s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (351)
T 3f3f_A 227 GRWYQLIA--TGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD 304 (351)
T ss_dssp SCSSEEEE--EEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECT
T ss_pred CCcceEEE--EEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEec
Confidence 5555 6788999999998643221 11 22233344455555554444321 1234566677667788888877
Q ss_pred C--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884 280 E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 280 ~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
| .+..++|+|||++|++++. |+.|+||+++.
T Consensus 305 h~~~v~~~~~s~~~~~l~s~~~------dg~v~iw~~~~ 337 (351)
T 3f3f_A 305 HNGEVWSVSWNLTGTILSSAGD------DGKVRLWKATY 337 (351)
T ss_dssp TSSCEEEEEECSSSCCEEEEET------TSCEEEEEECT
T ss_pred ccccEEEEEEcCCCCEEEEecC------CCcEEEEecCc
Confidence 6 5667999999999999999 99999999964
No 75
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.94 E-value=9.1e-26 Score=223.22 Aligned_cols=274 Identities=9% Similarity=0.020 Sum_probs=189.1
Q ss_pred cceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCC---CcE---EEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEE
Q 013884 2 LLLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTET---GEA---VYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQ 73 (434)
Q Consensus 2 V~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~---g~~---~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~ 73 (434)
|++|+||| +|++|+|++ .|+.|+|||+.+ +.. ...+. |...+.+++|+|++++|++++ |++|+
T Consensus 66 V~~~~~s~~~~~~l~s~s-----~dg~v~vwd~~~~~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~l~s~s~dg~i~ 136 (437)
T 3gre_A 66 ITSSAVSPGETPYLITGS-----DQGVIKIWNLKEIIVGEVYSSSLTYD----CSSTVTQITMIPNFDAFAVSSKDGQII 136 (437)
T ss_dssp EEEEEEECSSSCEEEEEE-----TTSEEEEEEHHHHHTTCCCSCSEEEE----CSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred eEEEEECCCCCCEEEEec-----CCceEEEeECcccccCcccceeeecc----CCCCEEEEEEeCCCCEEEEEeCCCEEE
Confidence 78999999 999999999 899999999977 432 22332 236777999999999999885 67999
Q ss_pred EEeCC---CCCCceeeeeecCCeeEEEEeCC--CCCeEEEE---ecC-----CCCCCceEEEEEcCCCCCCCceeeeee-
Q 013884 74 FFDTT---DFPKGILYRLRVPGVAAFEVSKA--PGSHVAVF---VPE-----SKGSPASVQIYACGKDLQSQPLARRSF- 139 (434)
Q Consensus 74 v~~~~---~~~~~~~~~~~~~~v~~~~~sp~--~~~~ia~~---~~~-----~~~~~~~v~i~~~~~~~~~~~i~~~~~- 139 (434)
+||+. .... ........+..+.++|+ ....+++. .++ ..+.++.|++|++.. .+.+.....
T Consensus 137 vwd~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~~ 211 (437)
T 3gre_A 137 VLKVNHYQQESE--VKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT---LERLQIIENS 211 (437)
T ss_dssp EEEEEEEEETTE--EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT---CCEEEEEECC
T ss_pred EEEeccccCCce--eeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---CeeeEEEccC
Confidence 99984 3221 12222224556665551 11111111 010 134568999999988 677777776
Q ss_pred -cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCc-eeeeecCCCCCeEEEEECc----CCCEEEEE
Q 013884 140 -FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSY----SGSEFAVV 213 (434)
Q Consensus 140 -~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~~~~i~~~~wsp----dg~~~av~ 213 (434)
+...+.++.|+|+|..|+... .|...+ .+++.... ...+.+.+..+|.+++|+| ++..|+
T Consensus 212 ~h~~~v~~~~~s~~~~~l~s~~---~dg~i~---------iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~-- 277 (437)
T 3gre_A 212 PRHGAVSSICIDEECCVLILGT---TRGIID---------IWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVV-- 277 (437)
T ss_dssp GGGCCEEEEEECTTSCEEEEEE---TTSCEE---------EEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEE--
T ss_pred CCCCceEEEEECCCCCEEEEEc---CCCeEE---------EEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEE--
Confidence 788999999999999876532 344333 33332221 1222335567899997775 455555
Q ss_pred EccCCCeEEEEecc-ceeEEEc----------------------------CCcCeeEEEECCCCCeEEEEecCCCCCeEE
Q 013884 214 YGFMPASATIFNKK-CRPILEL----------------------------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMA 264 (434)
Q Consensus 214 ~g~~~~~i~l~d~~-~~~~~~~----------------------------~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~ 264 (434)
++..|+.|++||++ +..+..+ +...+++++|+ ++++|++++ .+|.|+
T Consensus 278 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~---~d~~i~ 353 (437)
T 3gre_A 278 GGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDE---ATSSIV 353 (437)
T ss_dssp EESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEG---GGTEEE
T ss_pred EEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecC---CCCeEE
Confidence 68889999999996 3333222 33457889999 778999998 557999
Q ss_pred EEEccCCEEEEEeeC-------------------------------------C--CceEEEECCC--CCEEEEEEcCCce
Q 013884 265 FWDYVDGKQLGTTRA-------------------------------------E--CSVTSEWSPD--GRYFMTATTAPRL 303 (434)
Q Consensus 265 iwd~~~~~~i~~~~~-------------------------------------~--~~~~~~wspd--g~~l~tas~~~rl 303 (434)
+||+.+++.+..+.+ | .+..++|+++ +.+|++++.
T Consensus 354 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~---- 429 (437)
T 3gre_A 354 MFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDN---- 429 (437)
T ss_dssp EEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEET----
T ss_pred EEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcC----
Confidence 999988754444432 2 4566899998 889999999
Q ss_pred eeCCcEEEEe
Q 013884 304 QIDNGIKIFH 313 (434)
Q Consensus 304 ~~D~~i~iw~ 313 (434)
|+.|+||+
T Consensus 430 --dG~I~iw~ 437 (437)
T 3gre_A 430 --SGLIGIFQ 437 (437)
T ss_dssp --TSCEEEEC
T ss_pred --CceEEEeC
Confidence 99999995
No 76
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.94 E-value=1.2e-24 Score=213.11 Aligned_cols=276 Identities=9% Similarity=0.101 Sum_probs=196.6
Q ss_pred ceEEecCCCcEEEE-EecCCCCCCCcEEEEEcCCCcE----EEEEeecCcCCCCCCeeeecC-CCcEEEEec-CCeEEEE
Q 013884 3 LLLTCLRVGLIIQT-FQKSSTPQEKNVILWKTETGEA----VYQLFQKNMTKTTWPSIRFSS-DEAVACRMA-TNEIQFF 75 (434)
Q Consensus 3 ~~l~fSP~g~~L~t-~~~~~~~~d~~v~iWd~~~g~~----~~~~~~~~~~~~~~~~~~~S~-d~~~la~~~-~~~i~v~ 75 (434)
..++++|+...++. ++ .|+.|+||++.+... +..+.. |...+.+++|+| ++.+|++++ |+.|+||
T Consensus 38 ~~~~~~~~~~~~~~~~~-----~~g~i~v~~~~~~~~~~~~~~~~~~---h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw 109 (402)
T 2aq5_A 38 GFCAVNPKFMALICEAS-----GGGAFLVLPLGKTGRVDKNVPLVCG---HTAPVLDIAWCPHNDNVIASGSEDCTVMVW 109 (402)
T ss_dssp CSEEECSSEEEEEBCCS-----SSCCEEEEETTCCEECCTTCCCBCC---CSSCEEEEEECTTCTTEEEEEETTSEEEEE
T ss_pred CcEEECCCeEEEEEEEc-----CCCEEEEEECccCCCCCCCCceEec---CCCCEEEEEeCCCCCCEEEEEeCCCeEEEE
Confidence 35778887765553 33 689999999865432 222322 447788999999 999999985 6799999
Q ss_pred eCCCCC-------CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee--eecccceeE
Q 013884 76 DTTDFP-------KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR--SFFRCSTVQ 146 (434)
Q Consensus 76 ~~~~~~-------~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~--~~~~~~~~~ 146 (434)
++.... .......|...|..++|+|++...++. .+.++.|++|++.+ .+.+... ..+...+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s-----~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~v~~ 181 (402)
T 2aq5_A 110 EIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLS-----AGCDNVILVWDVGT---GAAVLTLGPDVHPDTIYS 181 (402)
T ss_dssp ECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEE-----EETTSCEEEEETTT---TEEEEEECTTTCCSCEEE
T ss_pred EccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEE-----EcCCCEEEEEECCC---CCccEEEecCCCCCceEE
Confidence 998752 223344566789999999996456654 24567899999987 6677666 668888999
Q ss_pred EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeee--cCCCC-CeEEEEECcCCCEEEEEEc---cCCCe
Q 013884 147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP--LRKEG-PVHDVQWSYSGSEFAVVYG---FMPAS 220 (434)
Q Consensus 147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~--l~~~~-~i~~~~wspdg~~~av~~g---~~~~~ 220 (434)
+.|+|+|+.|++.. .|.. +..+++... ..... ..+.+ .+..++|+|+++.++ +| ..++.
T Consensus 182 ~~~~~~~~~l~~~~---~d~~---------i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~g~~~~~d~~ 246 (402)
T 2aq5_A 182 VDWSRDGALICTSC---RDKR---------VRVIEPRKG-TVVAEKDRPHEGTRPVHAVFVSEGKILT--TGFSRMSERQ 246 (402)
T ss_dssp EEECTTSSCEEEEE---TTSE---------EEEEETTTT-EEEEEEECSSCSSSCCEEEECSTTEEEE--EEECTTCCEE
T ss_pred EEECCCCCEEEEEe---cCCc---------EEEEeCCCC-ceeeeeccCCCCCcceEEEEcCCCcEEE--EeccCCCCce
Confidence 99999999876532 3333 334443333 22222 23344 489999999998777 45 57889
Q ss_pred EEEEecccee----EEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE----EEEEeeC-CCceEEEECCC
Q 013884 221 ATIFNKKCRP----ILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK----QLGTTRA-ECSVTSEWSPD 290 (434)
Q Consensus 221 i~l~d~~~~~----~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~----~i~~~~~-~~~~~~~wspd 290 (434)
|.+||++... ...+ +...+.+++|+|+|++|++++. .+|.|++||+.+++ .+..+.+ ..+..++|+|+
T Consensus 247 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~--~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~ 324 (402)
T 2aq5_A 247 VALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGK--GDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPK 324 (402)
T ss_dssp EEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEET--TCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCG
T ss_pred EEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEc--CCCeEEEEEecCCCcceEeecccccCCcccceEEecc
Confidence 9999996421 3333 5677999999999999987663 35799999999875 3344432 35667999999
Q ss_pred CCEEEEEEcCCceeeCCcEEEEeecCcee
Q 013884 291 GRYFMTATTAPRLQIDNGIKIFHHNGSLF 319 (434)
Q Consensus 291 g~~l~tas~~~rl~~D~~i~iw~~~g~~~ 319 (434)
|.++++ . |+.+++|++....+
T Consensus 325 ~~~~~s--~------~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 325 RGLEVN--K------CEIARFYKLHERKC 345 (402)
T ss_dssp GGSCGG--G------TEEEEEEEEETTEE
T ss_pred ccccee--c------ceeEEEEEcCCCcE
Confidence 998764 4 77999999976543
No 77
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.94 E-value=2.2e-24 Score=229.75 Aligned_cols=298 Identities=13% Similarity=0.083 Sum_probs=212.0
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|++++|||+|++|++++ .|+.|+|||+.+++.+..+..+. ..+.+++|+||+++|+++. ++.|++|++...
T Consensus 58 v~~~~~s~~~~~l~~~~-----~dg~i~vw~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 129 (814)
T 3mkq_A 58 VRAGKFIARKNWIIVGS-----DDFRIRVFNYNTGEKVVDFEAHP---DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129 (814)
T ss_dssp EEEEEEEGGGTEEEEEE-----TTSEEEEEETTTCCEEEEEECCS---SCEEEEEECSSSSEEEEEETTSEEEEEEGGGT
T ss_pred EEEEEEeCCCCEEEEEe-----CCCeEEEEECCCCcEEEEEecCC---CCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC
Confidence 78999999999999998 79999999999999998887643 6677999999999999885 579999998764
Q ss_pred C-CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc-cceeEEEECC--CCCeE
Q 013884 81 P-KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR-CSTVQLNWNR--GSTGL 156 (434)
Q Consensus 81 ~-~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~-~~~~~~~ws~--~G~~l 156 (434)
. .......+...|.++.|+|..+..+++ .+.++.|++|++.. .........+. ..+..+.|+| +|..|
T Consensus 130 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-----~~~dg~v~vwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 201 (814)
T 3mkq_A 130 WALEQTFEGHEHFVMCVAFNPKDPSTFAS-----GCLDRTVKVWSLGQ---STPNFTLTTGQERGVNYVDYYPLPDKPYM 201 (814)
T ss_dssp SEEEEEEECCSSCEEEEEEETTEEEEEEE-----EETTSEEEEEETTC---SSCSEEEECCCTTCCCEEEECCSTTCCEE
T ss_pred ceEEEEEcCCCCcEEEEEEEcCCCCEEEE-----EeCCCeEEEEECCC---CcceeEEecCCCCCEEEEEEEECCCCCEE
Confidence 2 222233455679999999943445543 24457999999977 45554444443 6788999999 88876
Q ss_pred EEEEEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEEEc
Q 013884 157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL 234 (434)
Q Consensus 157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~~ 234 (434)
++.. .|.. +..++.... .....+ .+.+.|.+++|+|+|+.++ ++..++.|.+||+.. ..+..+
T Consensus 202 ~~~~---~dg~---------i~~~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~~dg~v~vwd~~~~~~~~~~ 266 (814)
T 3mkq_A 202 ITAS---DDLT---------IKIWDYQTK-SCVATLEGHMSNVSFAVFHPTLPIII--SGSEDGTLKIWNSSTYKVEKTL 266 (814)
T ss_dssp EEEC---TTSE---------EEEEETTTT-EEEEEEECCSSCEEEEEECSSSSEEE--EEETTSCEEEEETTTCSEEEEE
T ss_pred EEEe---CCCE---------EEEEECCCC-cEEEEEcCCCCCEEEEEEcCCCCEEE--EEeCCCeEEEEECCCCcEEEEe
Confidence 5531 2332 333343333 222222 3578999999999999888 577789999999964 444444
Q ss_pred --CCcCeeEEEECCCCCeE-EEEecCCCCCeEEEEEccCC----------EEEEEe------------------------
Q 013884 235 --GSGPYNTVRWNPKGKFL-CLAGFGNLPGDMAFWDYVDG----------KQLGTT------------------------ 277 (434)
Q Consensus 235 --~~~~~~~i~~sP~g~~l-~~~~~~~~~g~i~iwd~~~~----------~~i~~~------------------------ 277 (434)
+...+.+++|+|+|+.+ ++++.+ +.+.+|++... +.+...
T Consensus 267 ~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (814)
T 3mkq_A 267 NVGLERSWCIATHPTGRKNYIASGFD---NGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDE 343 (814)
T ss_dssp CCSSSSEEEEEECTTCGGGEEEEEET---TEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSS
T ss_pred ecCCCcEEEEEEccCCCceEEEEEeC---CCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCc
Confidence 67889999999999832 334423 46888886532 222210
Q ss_pred ---------eCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeecccceeeEEEcCCCCCCCC
Q 013884 278 ---------RAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 278 ---------~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~~~~~~~~~~w~p~~~~~~~~ 342 (434)
..+ .+..++|+|||++|++++ |+.+.||++..... .....+..+.|+|++..+...
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-------~~~~~i~~~~~~~~--~~~~~i~~~~~spdg~~la~~ 410 (814)
T 3mkq_A 344 PLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-------DGEYVIYTALAWRN--KAFGKCQDFVWGPDSNSYALI 410 (814)
T ss_dssp CBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-------TTEEEEEETTTTEE--EEEEECSEEEECTTSSCEEEE
T ss_pred cceeeeecCCCCccCCceeEECCCCCEEEEec-------CCEEEEEECccccc--cCCCceEEEEEeCCCCeEEEE
Confidence 111 345699999999999886 79999999765432 234567889999988766543
No 78
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.94 E-value=1.6e-24 Score=212.23 Aligned_cols=244 Identities=15% Similarity=0.210 Sum_probs=184.7
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~ 80 (434)
|.+++|||+|++|++++ .|+.|+|||+.+++.+..+..+. ..+.++.| ++.+++++ .++.|++||+...
T Consensus 137 v~~v~~s~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~ 206 (401)
T 4aez_A 137 VASVKWSHDGSFLSVGL-----GNGLVDIYDVESQTKLRTMAGHQ---ARVGCLSW--NRHVLSSGSRSGAIHHHDVRIA 206 (401)
T ss_dssp EEEEEECTTSSEEEEEE-----TTSCEEEEETTTCCEEEEECCCS---SCEEEEEE--ETTEEEEEETTSEEEEEETTSS
T ss_pred EEEEEECCCCCEEEEEC-----CCCeEEEEECcCCeEEEEecCCC---CceEEEEE--CCCEEEEEcCCCCEEEEecccC
Confidence 78999999999999998 89999999999999998887543 66778888 56788877 5679999999853
Q ss_pred CC-ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013884 81 PK-GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV 159 (434)
Q Consensus 81 ~~-~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~ 159 (434)
.. ......+...|..+.|+|+ +..+++ ++.++.|++|++.. ...+.....+...+..+.|+|+|..+++.
T Consensus 207 ~~~~~~~~~~~~~v~~~~~~~~-~~~l~s-----~~~d~~v~iwd~~~---~~~~~~~~~~~~~v~~~~~~p~~~~ll~~ 277 (401)
T 4aez_A 207 NHQIGTLQGHSSEVCGLAWRSD-GLQLAS-----GGNDNVVQIWDARS---SIPKFTKTNHNAAVKAVAWCPWQSNLLAT 277 (401)
T ss_dssp SCEEEEEECCSSCEEEEEECTT-SSEEEE-----EETTSCEEEEETTC---SSEEEEECCCSSCCCEEEECTTSTTEEEE
T ss_pred cceeeEEcCCCCCeeEEEEcCC-CCEEEE-----EeCCCeEEEccCCC---CCccEEecCCcceEEEEEECCCCCCEEEE
Confidence 32 2333445668999999997 555554 34567899999987 67777777788899999999999888776
Q ss_pred EEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce---eEEE--c
Q 013884 160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR---PILE--L 234 (434)
Q Consensus 160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~---~~~~--~ 234 (434)
.+...|.. ++.++.... .....+.....|.+++|+|+++.+++++|..++.+.+||+... .+.. .
T Consensus 278 ~~gs~d~~---------i~i~d~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~ 347 (401)
T 4aez_A 278 GGGTMDKQ---------IHFWNAATG-ARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPA 347 (401)
T ss_dssp ECCTTTCE---------EEEEETTTC-CEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEEC
T ss_pred ecCCCCCE---------EEEEECCCC-CEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecC
Confidence 43223333 334443333 3333444577899999999999999877888999999998642 2222 3
Q ss_pred CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013884 235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT 277 (434)
Q Consensus 235 ~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~ 277 (434)
|...+.+++|+|+|++|++++ .+|.|+|||+.+++.+...
T Consensus 348 h~~~v~~~~~s~dg~~l~s~~---~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 348 HDTRVLYSALSPDGRILSTAA---SDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp CSSCCCEEEECTTSSEEEEEC---TTSEEEEEECCC-------
T ss_pred CCCCEEEEEECCCCCEEEEEe---CCCcEEEEECCCCcccccc
Confidence 788999999999999999998 5679999999988766543
No 79
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.94 E-value=2.6e-24 Score=207.23 Aligned_cols=237 Identities=9% Similarity=0.100 Sum_probs=178.0
Q ss_pred CCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCC--CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEc
Q 013884 49 KTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFP--KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYAC 125 (434)
Q Consensus 49 ~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~ 125 (434)
...+.+++|+||+++|+++ .++.|++|+..... .......+...|..++|+|+ +..+++- +.++.|++|++
T Consensus 8 ~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-----~~dg~i~vwd~ 81 (372)
T 1k8k_C 8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD-SNRIVTC-----GTDRNAYVWTL 81 (372)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT-TTEEEEE-----ETTSCEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCC-CCEEEEE-----cCCCeEEEEEC
Confidence 3677799999999999998 57899999987753 22333445668999999998 4555432 34578999999
Q ss_pred CCCCCCCceee--eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCc--eeeeecCCCCCeEEE
Q 013884 126 GKDLQSQPLAR--RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH--EGLVPLRKEGPVHDV 201 (434)
Q Consensus 126 ~~~~~~~~i~~--~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l~~~~~i~~~ 201 (434)
.. .+.... ...+...+..+.|+|+|+.|++.. .|... .+|.++..... ...+...+...|.++
T Consensus 82 ~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~v-------~i~d~~~~~~~~~~~~~~~~~~~~i~~~ 148 (372)
T 1k8k_C 82 KG---RTWKPTLVILRINRAARCVRWAPNEKKFAVGS---GSRVI-------SICYFEQENDWWVCKHIKKPIRSTVLSL 148 (372)
T ss_dssp ET---TEEEEEEECCCCSSCEEEEEECTTSSEEEEEE---TTSSE-------EEEEEETTTTEEEEEEECTTCCSCEEEE
T ss_pred CC---CeeeeeEEeecCCCceeEEEECCCCCEEEEEe---CCCEE-------EEEEecCCCcceeeeeeecccCCCeeEE
Confidence 76 443333 244677889999999999876542 23222 24444432221 112223457899999
Q ss_pred EECcCCCEEEEEEccCCCeEEEEecc-------------------ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCC
Q 013884 202 QWSYSGSEFAVVYGFMPASATIFNKK-------------------CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLP 260 (434)
Q Consensus 202 ~wspdg~~~av~~g~~~~~i~l~d~~-------------------~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~ 260 (434)
+|+|+++.|+ ++..++.+.+||++ ...+..+ +...+++++|+|+|++|++++ .+
T Consensus 149 ~~~~~~~~l~--~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d 223 (372)
T 1k8k_C 149 DWHPNSVLLA--AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS---HD 223 (372)
T ss_dssp EECTTSSEEE--EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE---TT
T ss_pred EEcCCCCEEE--EEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe---CC
Confidence 9999999888 57778999999953 3455555 578899999999999999998 55
Q ss_pred CeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884 261 GDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 261 g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
|.|++||+.+++.+..+..+ .+..++|+|+|++|+++ . |+.|+||++..
T Consensus 224 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~------d~~i~i~~~~~ 274 (372)
T 1k8k_C 224 STVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-H------DCFPVLFTYDS 274 (372)
T ss_dssp TEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-T------TSSCEEEEEET
T ss_pred CEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-e------CCeEEEEEccC
Confidence 79999999999888888776 55679999999988887 6 99999999976
No 80
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.1e-24 Score=210.04 Aligned_cols=236 Identities=14% Similarity=0.195 Sum_probs=166.8
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcC--CCcEEEEEeecCcCCCCCCeeeecCC--CcEEEEec-CCeEEEEe
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTE--TGEAVYQLFQKNMTKTTWPSIRFSSD--EAVACRMA-TNEIQFFD 76 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~--~g~~~~~~~~~~~~~~~~~~~~~S~d--~~~la~~~-~~~i~v~~ 76 (434)
|++++|||+|++|++++ .|+.|+|||+. +++.+..+..+ ...+.++.|+++ +.+|++++ |+.|++||
T Consensus 14 v~~~~~s~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd 85 (379)
T 3jrp_A 14 IHDAVLDYYGKRLATCS-----SDKTIKIFEVEGETHKLIDTLTGH---EGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85 (379)
T ss_dssp EEEEEECSSSSEEEEEE-----TTSCEEEEEEETTEEEEEEEECCC---SSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred EEEEEEcCCCCEEEEEE-----CCCcEEEEecCCCcceeeeEecCC---CCcEEEEEeCCCCCCCEEEEeccCCEEEEEE
Confidence 78999999999999998 89999999998 55666666554 366779999987 89998885 67999999
Q ss_pred CCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC--CC
Q 013884 77 TTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG--ST 154 (434)
Q Consensus 77 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~--G~ 154 (434)
+........ .....+...+..+.|+|+ |.
T Consensus 86 ~~~~~~~~~-------------------------------------------------~~~~~~~~~v~~~~~~~~~~~~ 116 (379)
T 3jrp_A 86 EENGRWSQI-------------------------------------------------AVHAVHSASVNSVQWAPHEYGP 116 (379)
T ss_dssp EETTEEEEE-------------------------------------------------EEECCCSSCEEEEEECCGGGCS
T ss_pred cCCCceeEe-------------------------------------------------eeecCCCcceEEEEeCCCCCCC
Confidence 765220000 000112234556777777 66
Q ss_pred eEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECc-------------CCCEEEEEEccCCCeE
Q 013884 155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY-------------SGSEFAVVYGFMPASA 221 (434)
Q Consensus 155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wsp-------------dg~~~av~~g~~~~~i 221 (434)
.+++.. .|...+ +|.+.............+..+|.+++|+| ++..|+ ++..++.|
T Consensus 117 ~l~~~~---~d~~i~-------v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~dg~i 184 (379)
T 3jrp_A 117 LLLVAS---SDGKVS-------VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFV--TGGADNLV 184 (379)
T ss_dssp EEEEEE---TTSEEE-------EEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEE--EEETTSCE
T ss_pred EEEEec---CCCcEE-------EEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEE--EEeCCCeE
Confidence 654432 222222 33332221112222234578999999999 688887 57788999
Q ss_pred EEEeccce-----eEEEc--CCcCeeEEEECCC---CCeEEEEecCCCCCeEEEEEccCCE---EEEEee--CC--CceE
Q 013884 222 TIFNKKCR-----PILEL--GSGPYNTVRWNPK---GKFLCLAGFGNLPGDMAFWDYVDGK---QLGTTR--AE--CSVT 284 (434)
Q Consensus 222 ~l~d~~~~-----~~~~~--~~~~~~~i~~sP~---g~~l~~~~~~~~~g~i~iwd~~~~~---~i~~~~--~~--~~~~ 284 (434)
++||++.. .+..+ |...+++++|+|+ |++|++++ .+|.|+|||+.++. ...... .+ .+..
T Consensus 185 ~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 261 (379)
T 3jrp_A 185 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS---QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 261 (379)
T ss_dssp EEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE---TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEE
T ss_pred EEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe---CCCEEEEEeCCCCCccceeeeeccccCCCcEEE
Confidence 99998632 22333 6889999999999 89999998 56799999998762 222221 12 5667
Q ss_pred EEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884 285 SEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 285 ~~wspdg~~l~tas~~~rl~~D~~i~iw~~~ 315 (434)
++|+|||++|++++. |+.|+||++.
T Consensus 262 ~~~s~~g~~l~~~~~------dg~i~iw~~~ 286 (379)
T 3jrp_A 262 ASWSLSGNVLALSGG------DNKVTLWKEN 286 (379)
T ss_dssp EEECSSSCCEEEEES------SSSEEEEEEE
T ss_pred EEEcCCCCEEEEecC------CCcEEEEeCC
Confidence 999999999999999 9999999996
No 81
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.94 E-value=6.3e-24 Score=202.61 Aligned_cols=275 Identities=14% Similarity=0.137 Sum_probs=184.5
Q ss_pred CCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeee----ecCCeeEEEEeCCCCCeEEEE
Q 013884 35 TGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRL----RVPGVAAFEVSKAPGSHVAVF 109 (434)
Q Consensus 35 ~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~----~~~~v~~~~~sp~~~~~ia~~ 109 (434)
+.+++..+..+. ..+.++.|+++ +||++ .|++|++|++..........+ |...|.+++|+|+ +.+++.
T Consensus 3 ~~~~~~~~~~h~---~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~-~~~las- 75 (330)
T 2hes_X 3 SINLIKSLKLYK---EKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH-TSLLAA- 75 (330)
T ss_dssp CCEEEEEEECCS---SCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTT-SSEEEE-
T ss_pred ccccceeeccCC---CceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCC-CCEEEE-
Confidence 455667776654 56669999998 77777 568999999876432122222 5567999999998 455553
Q ss_pred ecCCCCCCceEEEEEcCCCC----CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCC
Q 013884 110 VPESKGSPASVQIYACGKDL----QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT 185 (434)
Q Consensus 110 ~~~~~~~~~~v~i~~~~~~~----~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~ 185 (434)
.+.++.|+||++.... ....+.....|...+..+.|+|+|++|+.. ..|.+.+.| .+...+.
T Consensus 76 ----~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~---s~D~~v~iw-------d~~~~~~ 141 (330)
T 2hes_X 76 ----GSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATC---SRDKSVWIW-------ETDESGE 141 (330)
T ss_dssp ----EETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEE---ETTSCEEEE-------ECCTTCC
T ss_pred ----EeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEE---eCCCEEEEE-------eccCCCC
Confidence 3456789999985311 023455666788899999999999986543 345555433 3211111
Q ss_pred -ceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc---eeEEEc--CCcCeeEEEECCC--CCeEEEEec
Q 013884 186 -HEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC---RPILEL--GSGPYNTVRWNPK--GKFLCLAGF 256 (434)
Q Consensus 186 -~~~~v~l-~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~---~~~~~~--~~~~~~~i~~sP~--g~~l~~~~~ 256 (434)
......+ .+...|.+++|+|++..|+ +++.|+.|++||... ..+..+ |.+.+.++.|+|+ +.+|++++
T Consensus 142 ~~~~~~~~~~h~~~v~~v~~~p~~~~l~--s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s- 218 (330)
T 2hes_X 142 EYECISVLQEHSQDVKHVIWHPSEALLA--SSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS- 218 (330)
T ss_dssp CCEEEEEECCCSSCEEEEEECSSSSEEE--EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE-
T ss_pred CeEEEEEeccCCCceEEEEECCCCCEEE--EEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe-
Confidence 1122222 3578999999999999888 678899999999853 344444 7889999999999 77899998
Q ss_pred CCCCCeEEEEEccCC--------EEEEEeeC-C--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc---eeeee
Q 013884 257 GNLPGDMAFWDYVDG--------KQLGTTRA-E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS---LFFKK 322 (434)
Q Consensus 257 ~~~~g~i~iwd~~~~--------~~i~~~~~-~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~---~~~~~ 322 (434)
.+|.|++||+.++ ..+..+.. | .+..++|++++ +|++++. |+.|+||+.... .+...
T Consensus 219 --~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~------dg~v~iw~~~~~~~~~~~~~ 289 (330)
T 2hes_X 219 --DDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGA------DGVLAVYEEVDGEWKVFAKR 289 (330)
T ss_dssp --TTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEET------TSCEEEEEEETTEEEEEEEE
T ss_pred --CCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeC------CCEEEEEEcCCCceEEEecc
Confidence 5579999998754 34444433 3 56679999776 7899998 999999998653 22221
Q ss_pred ---ecc-cceeeEEEcC--CCCCCCC
Q 013884 323 ---MFD-KLFQAEWKPV--SPDKFGD 342 (434)
Q Consensus 323 ---~~~-~~~~~~w~p~--~~~~~~~ 342 (434)
+.. .+..+.|.|. +..+.+.
T Consensus 290 ~~~h~~~~v~~v~~~~~~~~~~las~ 315 (330)
T 2hes_X 290 ALCHGVYEINVVKWLELNGKTILATG 315 (330)
T ss_dssp SCTTTTSCEEEEEEC-----CCEEEE
T ss_pred ccccccceEEEEEEecCCCceEEEEe
Confidence 223 6889999994 4445444
No 82
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.3e-23 Score=207.27 Aligned_cols=284 Identities=9% Similarity=-0.021 Sum_probs=194.5
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc---EEEEEeecCc-------------------------------
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE---AVYQLFQKNM------------------------------- 47 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~---~~~~~~~~~~------------------------------- 47 (434)
|.+|+|||||++|++.. ++.|++||+.+|+ .+..+.....
T Consensus 7 ~~~v~~s~dg~~l~~~~------~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T 2vdu_B 7 LQNLLTSRDGSLVFAII------KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNK 80 (450)
T ss_dssp CCEEEECSSSSEEEEEE------TTEEEEEEEETTTEEEEEEEEECCC--------------------------------
T ss_pred EEEEEecCCCCEEEEEe------CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCc
Confidence 57899999999888765 5789999999999 6666653210
Q ss_pred --------------------CCCCCCeeeecCCCcEE-EEe-cCCeEEEEeCC--CCCCceeee--eecCCeeEEEEeCC
Q 013884 48 --------------------TKTTWPSIRFSSDEAVA-CRM-ATNEIQFFDTT--DFPKGILYR--LRVPGVAAFEVSKA 101 (434)
Q Consensus 48 --------------------~~~~~~~~~~S~d~~~l-a~~-~~~~i~v~~~~--~~~~~~~~~--~~~~~v~~~~~sp~ 101 (434)
+...+.+++|+||+++| +++ .++.|+||++. ......... .+...|..++|+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 160 (450)
T 2vdu_B 81 GDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED 160 (450)
T ss_dssp -------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT
T ss_pred CccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC
Confidence 11246789999999996 666 56899999998 544333332 23457899999998
Q ss_pred CCCeEEEEecCCCCCCceEEEEEcCCCCCCC-ceeeeeecccceeEEEECCC---CCeEEEEEEecccccCceeecceeE
Q 013884 102 PGSHVAVFVPESKGSPASVQIYACGKDLQSQ-PLARRSFFRCSTVQLNWNRG---STGLLAVAQSDVDKTNQSYYGESKL 177 (434)
Q Consensus 102 ~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~-~i~~~~~~~~~~~~~~ws~~---G~~l~~~~~~~~d~~~~~~~g~~~l 177 (434)
+..+++- +..+.|.+|++....... .+.....+...+.++.|+|+ |+.|+.. +.|.+.+ +
T Consensus 161 -~~~l~~~-----~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~---~~d~~i~-------v 224 (450)
T 2vdu_B 161 -DTTVIIA-----DKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITS---DRDEHIK-------I 224 (450)
T ss_dssp -SSEEEEE-----ETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEE---ETTSCEE-------E
T ss_pred -CCEEEEE-----eCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEE---cCCCcEE-------E
Confidence 4555432 346789999987732122 33356677888999999999 7765442 2343333 3
Q ss_pred EEEeeCCCceeee-ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEEEcC--------------------
Q 013884 178 NYLTTDGTHEGLV-PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILELG-------------------- 235 (434)
Q Consensus 178 ~~l~~~~~~~~~v-~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~~~-------------------- 235 (434)
| ++........ ...+.+.|.+++|+ +++.|+ ++..|+.|.+||++. ..+..+.
T Consensus 225 w--d~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~--s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (450)
T 2vdu_B 225 S--HYPQCFIVDKWLFGHKHFVSSICCG-KDYLLL--SAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQ 299 (450)
T ss_dssp E--EESCTTCEEEECCCCSSCEEEEEEC-STTEEE--EEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC-----
T ss_pred E--ECCCCceeeeeecCCCCceEEEEEC-CCCEEE--EEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccc
Confidence 3 3333222222 23567899999999 999988 577899999999863 3333331
Q ss_pred -------CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc--cCC---EEEEEeeCC-CceEEEECCCCCEEEEEEcCCc
Q 013884 236 -------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY--VDG---KQLGTTRAE-CSVTSEWSPDGRYFMTATTAPR 302 (434)
Q Consensus 236 -------~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~--~~~---~~i~~~~~~-~~~~~~wspdg~~l~tas~~~r 302 (434)
...+..+.|+|+|++|++++.+ ++.|.|||+ .++ +.+..+..+ .+..++|+|++ .+++......
T Consensus 300 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~~--d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~-~~v~~~~~~~ 376 (450)
T 2vdu_B 300 NENNDIIEFAVSKIIKSKNLPFVAFFVEA--TKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDE-FQVTLDNKES 376 (450)
T ss_dssp -----CBCCCEEEEEECSSSSEEEEEETT--CSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTE-EEEEECCTTC
T ss_pred ccccccceEEEEEEEEeCCCCEEEEEECC--CCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCc-EEEEEecccC
Confidence 2457889999999999988733 379999999 555 667767665 56679999964 4444332100
Q ss_pred ee-eCCcEEEEeec
Q 013884 303 LQ-IDNGIKIFHHN 315 (434)
Q Consensus 303 l~-~D~~i~iw~~~ 315 (434)
.. -++.|.||.++
T Consensus 377 ~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 377 SGVQKNFAKFIEYN 390 (450)
T ss_dssp CSSCCCSEEEEEEE
T ss_pred CCCCCcceEEEEEE
Confidence 00 15668999874
No 83
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.93 E-value=1.6e-23 Score=201.96 Aligned_cols=265 Identities=8% Similarity=0.069 Sum_probs=179.7
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTD 79 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~ 79 (434)
|++++|||||++|++++ . ..++|||+.+++.+..... ..+..+.|++++++++.. .+++|+|||...
T Consensus 22 V~~v~fs~dg~~la~g~-----~-~~~~iw~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~ 90 (355)
T 3vu4_A 22 VTDYEFNQDQSCLILST-----L-KSFEIYNVHPVAHIMSQEM-----RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK 90 (355)
T ss_dssp CCEEEECTTSSEEEEEC-----S-SEEEEEEETTEEEEEEEEC-----SCCCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred eEEEEECCCCCEEEEEc-----C-CEEEEEecCCcceeeeeec-----CCeEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence 78999999999999876 3 4589999998877655432 235578899998887654 346999999887
Q ss_pred CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013884 80 FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV 159 (434)
Q Consensus 80 ~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~ 159 (434)
........ +...|.++.++++. +++.. .+.|++|++.+. .+.+..... ....+.+++ ..+++
T Consensus 91 ~~~~~~~~-~~~~v~~v~~~~~~---~~~~~------~~~i~i~d~~~~--~~~~~~~~~---~~~~~~~s~--~~la~- 152 (355)
T 3vu4_A 91 KQDVSRIK-VDAPVKDLFLSREF---IVVSY------GDVISVFKFGNP--WKRITDDIR---FGGVCEFSN--GLLVY- 152 (355)
T ss_dssp TEEEEEEE-CSSCEEEEEECSSE---EEEEE------TTEEEEEESSTT--CCBSSCCEE---EEEEEEEET--TEEEE-
T ss_pred CcEEEEEE-CCCceEEEEEcCCE---EEEEE------cCEEEEEECCCC--ceeeEEecc---CCceEEEEc--cEEEE-
Confidence 54322222 33468899998762 22221 357999999872 134433332 222334455 44433
Q ss_pred EEecccccCceeecceeEEEEeeCCCc---------------e-eeeecCCCCCeEEEEECcCCCEEEEEEccCCCe-EE
Q 013884 160 AQSDVDKTNQSYYGESKLNYLTTDGTH---------------E-GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPAS-AT 222 (434)
Q Consensus 160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~---------------~-~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~-i~ 222 (434)
++...|...+ +|.+ .... . ......+.++|.+++|+|+|+.|+ +++.|++ |+
T Consensus 153 ~sg~~~g~v~-------iwd~--~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~--s~s~d~~~v~ 221 (355)
T 3vu4_A 153 SNEFNLGQIH-------ITKL--QSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVA--TCSQDGTIIR 221 (355)
T ss_dssp EESSCTTCEE-------EEEC--CC------------------CCEEECCCSSCEEEEEECTTSSEEE--EEETTCSEEE
T ss_pred eCCCcCcEEE-------EEEC--CCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEE--EEeCCCCEEE
Confidence 2222333333 3322 2211 0 122234688999999999999998 6888998 99
Q ss_pred EEecc-ceeEEEc----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE--EEE-------------------
Q 013884 223 IFNKK-CRPILEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ--LGT------------------- 276 (434)
Q Consensus 223 l~d~~-~~~~~~~----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~--i~~------------------- 276 (434)
+||++ +..+..+ |...+++++|+|+|++|++++ .+|.|+|||+.+... ...
T Consensus 222 iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s---~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (355)
T 3vu4_A 222 VFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVS---DKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNF 298 (355)
T ss_dssp EEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEE---TTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEE
T ss_pred EEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEE---CCCEEEEEEccCCCCcccccccceeeccccccccceeEE
Confidence 99996 4455444 678999999999999999999 557999999875421 111
Q ss_pred -eeC---CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884 277 -TRA---ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 277 -~~~---~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~ 315 (434)
+.. .....++|+|||++|++++. |+.+++|++.
T Consensus 299 ~~~~~~~~~~~~~a~~~d~~~l~~~~~------dg~~~~~~~~ 335 (355)
T 3vu4_A 299 KLSVDKHVRGCKIAWISESSLVVVWPH------TRMIETFKVV 335 (355)
T ss_dssp ECCCCTTCCCCEEEESSSSEEEEEETT------TTEEEEEEEE
T ss_pred EeccCCCCCceEEEEeCCCCEEEEEeC------CCeEEEEEEE
Confidence 111 11255899999999999998 9999999984
No 84
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.93 E-value=2.1e-23 Score=198.32 Aligned_cols=283 Identities=17% Similarity=0.151 Sum_probs=199.3
Q ss_pred cEEEEEcCCC--cEEEEEeecCcCCCCCCeeeecCC-CcEEEEec-CCeEEEEeCCCCCCce-----eeeeecCCeeEEE
Q 013884 27 NVILWKTETG--EAVYQLFQKNMTKTTWPSIRFSSD-EAVACRMA-TNEIQFFDTTDFPKGI-----LYRLRVPGVAAFE 97 (434)
Q Consensus 27 ~v~iWd~~~g--~~~~~~~~~~~~~~~~~~~~~S~d-~~~la~~~-~~~i~v~~~~~~~~~~-----~~~~~~~~v~~~~ 97 (434)
++.++...+. +...++.+| ...|.+++|+|+ +++|++++ |++|+|||+....... ....|...|.++.
T Consensus 17 ~~~~~~~~~~~~~l~~tL~GH---~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~ 93 (340)
T 4aow_A 17 NLYFQSMMTEQMTLRGTLKGH---NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 93 (340)
T ss_dssp ---------CEEEEEEEECCC---SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEE
T ss_pred cEEEEEccCCceEEEEEECCc---cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEE
Confidence 4555554333 344456554 478889999998 68999885 6899999987654321 1223456799999
Q ss_pred EeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeE
Q 013884 98 VSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKL 177 (434)
Q Consensus 98 ~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l 177 (434)
|+|+ +.+++. .+.++.|++|+... .........+......+.+++++..|+.. ..|.....
T Consensus 94 ~s~d-g~~l~s-----~~~d~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~s~---s~d~~~~~------- 154 (340)
T 4aow_A 94 ISSD-GQFALS-----GSWDGTLRLWDLTT---GTTTRRFVGHTKDVLSVAFSSDNRQIVSG---SRDKTIKL------- 154 (340)
T ss_dssp ECTT-SSEEEE-----EETTSEEEEEETTT---TEEEEEEECCSSCEEEEEECTTSSCEEEE---ETTSCEEE-------
T ss_pred ECCC-CCEEEE-----EcccccceEEeecc---cceeeeecCCCCceeEEEEeecCccceee---cCCCeEEE-------
Confidence 9998 455543 34567899999987 66666666677778888999999986543 23443332
Q ss_pred EEEeeCCCceeeee-cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEEEc--CCcCeeEEEECCCCCeEEE
Q 013884 178 NYLTTDGTHEGLVP-LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCL 253 (434)
Q Consensus 178 ~~l~~~~~~~~~v~-l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~~--~~~~~~~i~~sP~g~~l~~ 253 (434)
++..+....... ..+...+..++|++++....++++..++.+++||++. ..+..+ |.+.+++++|+|+|++|++
T Consensus 155 --~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 232 (340)
T 4aow_A 155 --WNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCAS 232 (340)
T ss_dssp --ECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred --EEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEE
Confidence 232222222222 2346789999999988765555788899999999974 344444 7889999999999999999
Q ss_pred EecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee----------
Q 013884 254 AGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK---------- 322 (434)
Q Consensus 254 ~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~---------- 322 (434)
++ .+|.|++||+.+.+.+..+.++ .+..+.|+|++.++ +++. |+.|+|||+.+..+...
T Consensus 233 ~s---~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~ 302 (340)
T 4aow_A 233 GG---KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWL-CAAT------GPSIKIWDLEGKIIVDELKQEVISTSS 302 (340)
T ss_dssp EE---TTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEE-EEEE------TTEEEEEETTTTEEEEEECCC------
T ss_pred Ee---CCCeEEEEEeccCceeeeecCCceEEeeecCCCCcee-eccC------CCEEEEEECCCCeEEEeccccceeeec
Confidence 99 5679999999999999888877 45569999998755 5556 99999999976543221
Q ss_pred --ecccceeeEEEcCCCCCCCCc
Q 013884 323 --MFDKLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 323 --~~~~~~~~~w~p~~~~~~~~~ 343 (434)
+...+..++|.|++..+++..
T Consensus 303 ~~h~~~v~~l~~s~dg~~l~sgs 325 (340)
T 4aow_A 303 KAEPPQCTSLAWSADGQTLFAGY 325 (340)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEE
T ss_pred cCCCCCEEEEEECCCCCEEEEEe
Confidence 234688999999998887653
No 85
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.93 E-value=9.8e-25 Score=215.89 Aligned_cols=243 Identities=8% Similarity=0.119 Sum_probs=168.8
Q ss_pred CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCC-----------ceeeeeec------------CCeeEEEEeCCCC-C
Q 013884 50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPK-----------GILYRLRV------------PGVAAFEVSKAPG-S 104 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~-----------~~~~~~~~------------~~v~~~~~sp~~~-~ 104 (434)
..+.+++|+|||++||++. ++.|+||++..... ......|. ..|.++.|+|+++ .
T Consensus 29 ~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~ 108 (447)
T 3dw8_B 29 DIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAA 108 (447)
T ss_dssp GSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSS
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcc
Confidence 6677999999999999985 68999999876441 12233344 5699999999853 3
Q ss_pred eEEEEecCCCCCCceEEEEEcCCCCCCCce---------------------------------------ee-eeecccce
Q 013884 105 HVAVFVPESKGSPASVQIYACGKDLQSQPL---------------------------------------AR-RSFFRCST 144 (434)
Q Consensus 105 ~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i---------------------------------------~~-~~~~~~~~ 144 (434)
.+++- +.++.|++|++... ... .. ...|...+
T Consensus 109 ~l~s~-----s~d~~i~iw~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 180 (447)
T 3dw8_B 109 QFLLS-----TNDKTIKLWKISER---DKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI 180 (447)
T ss_dssp EEEEE-----ECSSCEEEEEEEEE---EEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred eEEEe-----CCCCeEEEEecccc---cCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence 44432 45678999998651 110 01 23477788
Q ss_pred eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCC-CEEEEEEccCCCeEEE
Q 013884 145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSG-SEFAVVYGFMPASATI 223 (434)
Q Consensus 145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg-~~~av~~g~~~~~i~l 223 (434)
.++.|+|+|+.|+.. .|...+.|.-...-..+..... .......+...|.+++|+|++ +.|+ ++..++.|++
T Consensus 181 ~~~~~~~~~~~l~s~----~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~--s~~~dg~i~i 253 (447)
T 3dw8_B 181 NSISINSDYETYLSA----DDLRINLWHLEITDRSFNIVDI-KPANMEELTEVITAAEFHPNSCNTFV--YSSSKGTIRL 253 (447)
T ss_dssp CEEEECTTSSEEEEE----CSSEEEEEETTEEEEEEEEEEC-CCSSGGGCCCCEEEEEECSSCTTEEE--EEETTSCEEE
T ss_pred EEEEEcCCCCEEEEe----CCCeEEEEECCCCCceeeeeec-ccccccccCcceEEEEECCCCCcEEE--EEeCCCeEEE
Confidence 999999999986542 3555554432211000000000 000011347889999999999 7777 5778999999
Q ss_pred Eecccee-----EEEc--CCc------------CeeEEEECCCCCeEEEEecCCCCCeEEEEEccC-CEEEEEeeCCC--
Q 013884 224 FNKKCRP-----ILEL--GSG------------PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD-GKQLGTTRAEC-- 281 (434)
Q Consensus 224 ~d~~~~~-----~~~~--~~~------------~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~-~~~i~~~~~~~-- 281 (434)
||++... +..+ +.. .+++++|+|+|++|++++ . |.|+|||+.+ ++.+..+..|.
T Consensus 254 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~---~-~~v~iwd~~~~~~~~~~~~~~~~~ 329 (447)
T 3dw8_B 254 CDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD---Y-LSVKVWDLNMENRPVETYQVHEYL 329 (447)
T ss_dssp EETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE---S-SEEEEEETTCCSSCSCCEESCGGG
T ss_pred EECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee---C-CeEEEEeCCCCccccceeeccccc
Confidence 9987433 3444 333 899999999999999987 4 7999999987 77777776663
Q ss_pred ---------------ceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884 282 ---------------SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 282 ---------------~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~ 317 (434)
...++|+|||++|++++. |+.|+|||+...
T Consensus 330 ~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~------dg~v~iwd~~~~ 374 (447)
T 3dw8_B 330 RSKLCSLYENDCIFDKFECCWNGSDSVVMTGSY------NNFFRMFDRNTK 374 (447)
T ss_dssp TTTHHHHHHTSGGGCCCCEEECTTSSEEEEECS------TTEEEEEETTTC
T ss_pred cccccccccccccccceEEEECCCCCEEEEecc------CCEEEEEEcCCC
Confidence 223899999999999999 999999999654
No 86
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.93 E-value=6.8e-24 Score=204.57 Aligned_cols=245 Identities=13% Similarity=0.153 Sum_probs=166.7
Q ss_pred EEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEE
Q 013884 30 LWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVF 109 (434)
Q Consensus 30 iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~ 109 (434)
||++.+.+.+.++..+ ...+.+++|||||++||++.++.++||+..... ........++..+.++++. ..+++.
T Consensus 3 i~s~~~~~~~~~~~~h---~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~ 76 (355)
T 3vu4_A 3 LGSMITRNPIVPENHV---SNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVA--HIMSQEMRHLSKVRMLHRT-NYVAFV 76 (355)
T ss_dssp -------------------CCCCCEEEECTTSSEEEEECSSEEEEEEETTEE--EEEEEECSCCCEEEECTTS-SEEEEE
T ss_pred cccccccCCccccccC---CCceEEEEECCCCCEEEEEcCCEEEEEecCCcc--eeeeeecCCeEEEEEcCCC-CEEEEE
Confidence 5667777776655443 377889999999999999988899999987643 2233444567888888873 444332
Q ss_pred ecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceee
Q 013884 110 VPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL 189 (434)
Q Consensus 110 ~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~ 189 (434)
++.++.|++|++.+ ++.+.... +...+..+.|++++ +++. .|.. ++.+++.......
T Consensus 77 ----~~~d~~v~iWd~~~---~~~~~~~~-~~~~v~~v~~~~~~--~~~~----~~~~---------i~i~d~~~~~~~~ 133 (355)
T 3vu4_A 77 ----TGVKEVVHIWDDVK---KQDVSRIK-VDAPVKDLFLSREF--IVVS----YGDV---------ISVFKFGNPWKRI 133 (355)
T ss_dssp ----CSSTTEEEEEETTT---TEEEEEEE-CSSCEEEEEECSSE--EEEE----ETTE---------EEEEESSTTCCBS
T ss_pred ----ECCccEEEEEECCC---CcEEEEEE-CCCceEEEEEcCCE--EEEE----EcCE---------EEEEECCCCceee
Confidence 23446999999987 67777666 45578899998864 3332 1222 3333333321111
Q ss_pred eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee-----------------EEEc--CCcCeeEEEECCCCCe
Q 013884 190 VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-----------------ILEL--GSGPYNTVRWNPKGKF 250 (434)
Q Consensus 190 v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~-----------------~~~~--~~~~~~~i~~sP~g~~ 250 (434)
..+. .+...++++| ..+++.+|..++.|++||++... +..+ |.+.+++++|||+|++
T Consensus 134 ~~~~--~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~ 209 (355)
T 3vu4_A 134 TDDI--RFGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDM 209 (355)
T ss_dssp SCCE--EEEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSE
T ss_pred EEec--cCCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCE
Confidence 1111 1445567777 67776558899999999997532 3333 7899999999999999
Q ss_pred EEEEecCCCCCe-EEEEEccCCEEEEEee-C-C--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884 251 LCLAGFGNLPGD-MAFWDYVDGKQLGTTR-A-E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 251 l~~~~~~~~~g~-i~iwd~~~~~~i~~~~-~-~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
|++++ .+|+ |+|||+.+++++..+. + | .+..++|+|||++|++++. |+.|+||++..
T Consensus 210 l~s~s---~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~------d~~v~iw~~~~ 271 (355)
T 3vu4_A 210 VATCS---QDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSD------KWTLHVFEIFN 271 (355)
T ss_dssp EEEEE---TTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEET------TCEEEEEESSC
T ss_pred EEEEe---CCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEEC------CCEEEEEEccC
Confidence 99999 5678 9999999999998887 3 4 5666999999999999999 99999999954
No 87
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=1.5e-23 Score=221.34 Aligned_cols=314 Identities=10% Similarity=0.040 Sum_probs=204.8
Q ss_pred cceEEecCCCcEEEEEecCCCCC-CC-----cEEEEEcCCCcEEEEEeecCcCC---------------------CCCCe
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQ-EK-----NVILWKTETGEAVYQLFQKNMTK---------------------TTWPS 54 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~-d~-----~v~iWd~~~g~~~~~~~~~~~~~---------------------~~~~~ 54 (434)
|.+++|||||++|++.+ . |+ +|++||+.+|+....+..+.... ..+..
T Consensus 39 ~~~~~~SpdG~~la~~~-----~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 39 LMKPKVAPDGSRVTFLR-----GKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CEEEEECTTSSEEEEEE-----CCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCceEecCCCEEEEEe-----ccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 67899999999999988 4 55 89999999998766664432110 12558
Q ss_pred eeecCCCcEEEEecCCeEEEEeCCCCC--CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCC
Q 013884 55 IRFSSDEAVACRMATNEIQFFDTTDFP--KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQ 132 (434)
Q Consensus 55 ~~~S~d~~~la~~~~~~i~v~~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~ 132 (434)
++|||||++|+++.+++|.+||+.... .......+...+..++|||+ +..+++... ..|.+|++.. +.
T Consensus 114 ~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPD-G~~la~~~~------~~i~~~d~~~---g~ 183 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPK-GGFVSFIRG------RNLWVIDLAS---GR 183 (741)
T ss_dssp CEECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTT-SSEEEEEET------TEEEEEETTT---TE
T ss_pred eEECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCC-CCEEEEEeC------CcEEEEecCC---CC
Confidence 999999999999988999999998751 11222233456899999999 556655431 3799999876 33
Q ss_pred ceeeeeeccc----------------ceeEEEECCCCCeEEEEEEecccccCc---------------ee-------ecc
Q 013884 133 PLARRSFFRC----------------STVQLNWNRGSTGLLAVAQSDVDKTNQ---------------SY-------YGE 174 (434)
Q Consensus 133 ~i~~~~~~~~----------------~~~~~~ws~~G~~l~~~~~~~~d~~~~---------------~~-------~g~ 174 (434)
.......... ....+.|||||+.|++...... .... .. .+.
T Consensus 184 ~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~-~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~ 262 (741)
T 2ecf_A 184 QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDES-PVPVQKRYEVYADRTDVIEQRYPAAGDANVQ 262 (741)
T ss_dssp EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECT-TSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCC-CCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence 3222111111 1357999999999887643211 0000 00 022
Q ss_pred eeEEEEeeCC-CceeeeecC--CCCCeEEEEECcCCCEEEEEEcc---CCCeEEEEeccceeEEEc---CC-c---CeeE
Q 013884 175 SKLNYLTTDG-THEGLVPLR--KEGPVHDVQWSYSGSEFAVVYGF---MPASATIFNKKCRPILEL---GS-G---PYNT 241 (434)
Q Consensus 175 ~~l~~l~~~~-~~~~~v~l~--~~~~i~~~~wspdg~~~av~~g~---~~~~i~l~d~~~~~~~~~---~~-~---~~~~ 241 (434)
..|+.+++.+ .....+... +...+.+++| |||+.+++.... .+..|.+||+.......+ +. . .+..
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~ 341 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNS 341 (741)
T ss_dssp EEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSC
T ss_pred eEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCc
Confidence 3677777766 543333332 4567899999 999999976432 234899999864433222 22 2 4568
Q ss_pred EEECCCCCeEEEEecCCCCCeEEEEEcc-CCEEEEEeeCC--CceEE-EECCCCCEEEEEEcCCceeeCC--cEEEEeec
Q 013884 242 VRWNPKGKFLCLAGFGNLPGDMAFWDYV-DGKQLGTTRAE--CSVTS-EWSPDGRYFMTATTAPRLQIDN--GIKIFHHN 315 (434)
Q Consensus 242 i~~sP~g~~l~~~~~~~~~g~i~iwd~~-~~~~i~~~~~~--~~~~~-~wspdg~~l~tas~~~rl~~D~--~i~iw~~~ 315 (434)
+.|||||+++++++ .+|.+.||.++ +++ +..+..+ .+..+ .|||||+.|++.+.. |+ .++||++.
T Consensus 342 ~~~spdg~~~~~~~---~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~-----~~~~~~~l~~~~ 412 (741)
T 2ecf_A 342 LRFLDDGSILWSSE---RTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGI-----ESARESQIYAVP 412 (741)
T ss_dssp CEECTTSCEEEEEC---TTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECS-----SCTTCBEEEEEE
T ss_pred eEECCCCeEEEEec---CCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeC-----CCCceEEEEEEE
Confidence 99999999777765 34556666544 333 4545443 34455 699999998776662 44 79999984
Q ss_pred --Cceeeeee-cccceeeEEEcCCCCCCC
Q 013884 316 --GSLFFKKM-FDKLFQAEWKPVSPDKFG 341 (434)
Q Consensus 316 --g~~~~~~~-~~~~~~~~w~p~~~~~~~ 341 (434)
|..+.... ...+..+.|+|++..++.
T Consensus 413 ~~g~~~~~l~~~~~~~~~~~spdg~~l~~ 441 (741)
T 2ecf_A 413 LQGGQPQRLSKAPGMHSASFARNASVYVD 441 (741)
T ss_dssp TTCCCCEECCCSCSEEEEEECTTSSEEEE
T ss_pred cCCCCeeecccCCCceEEEECCCCCEEEE
Confidence 55333332 345678999998876654
No 88
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.93 E-value=1.1e-23 Score=204.02 Aligned_cols=201 Identities=8% Similarity=0.009 Sum_probs=140.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP 81 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~ 81 (434)
|++++|||||++|++++ +..|+.|+|||+.+++++..+.+. ..+.+++|||||++++++.++.+.+|+.....
T Consensus 136 ~~~v~fSpDg~~la~as---~~~d~~i~iwd~~~~~~~~~~~~~----~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~ 208 (365)
T 4h5i_A 136 TKLVYISREGTVAAIAS---SKVPAIMRIIDPSDLTEKFEIETR----GEVKDLHFSTDGKVVAYITGSSLEVISTVTGS 208 (365)
T ss_dssp EEEEEECTTSSCEEEEE---SCSSCEEEEEETTTTEEEEEEECS----SCCCEEEECTTSSEEEEECSSCEEEEETTTCC
T ss_pred EEEEEEcCCCCEEEEEE---CCCCCEEEEeECCCCcEEEEeCCC----CceEEEEEccCCceEEeccceeEEEEEeccCc
Confidence 56899999999998776 236899999999999998887543 45779999999999999999889999876644
Q ss_pred Cceeee--eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013884 82 KGILYR--LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV 159 (434)
Q Consensus 82 ~~~~~~--~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~ 159 (434)
...... .+...|..++|+|++ ..++....+ ++....+++|++... ......
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg-~~l~~~s~d-~~~~~~i~~~~~~~~-------------------------~~~~~~ 261 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADD-TVLIAASLK-KGKGIVLTKISIKSG-------------------------NTSVLR 261 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETT-EEEEEEEES-SSCCEEEEEEEEETT-------------------------EEEEEE
T ss_pred ceeeeecCCCCCCEEEEEEcCCC-CEEEEEecC-CcceeEEeecccccc-------------------------eeccee
Confidence 321111 122346677777763 333322211 112223444443220 000000
Q ss_pred EEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc---C
Q 013884 160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL---G 235 (434)
Q Consensus 160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~---~ 235 (434)
.. ....+..+|.+++|||||+.|| +|+.|+.|+|||++ ++.+..+ |
T Consensus 262 -----------------~~-----------~~~~~~~~V~~~~~Spdg~~la--sgs~D~~V~iwd~~~~~~~~~~~~gH 311 (365)
T 4h5i_A 262 -----------------SK-----------QVTNRFKGITSMDVDMKGELAV--LASNDNSIALVKLKDLSMSKIFKQAH 311 (365)
T ss_dssp -----------------EE-----------EEESSCSCEEEEEECTTSCEEE--EEETTSCEEEEETTTTEEEEEETTSS
T ss_pred -----------------ee-----------eecCCCCCeEeEEECCCCCceE--EEcCCCEEEEEECCCCcEEEEecCcc
Confidence 00 0012257899999999999998 57889999999996 4556554 7
Q ss_pred CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013884 236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV 269 (434)
Q Consensus 236 ~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~ 269 (434)
..+|++++|||||++|++++ .|++|+|||+.
T Consensus 312 ~~~V~~v~fSpdg~~laS~S---~D~tvrvw~ip 342 (365)
T 4h5i_A 312 SFAITEVTISPDSTYVASVS---AANTIHIIKLP 342 (365)
T ss_dssp SSCEEEEEECTTSCEEEEEE---TTSEEEEEECC
T ss_pred cCCEEEEEECCCCCEEEEEe---CCCeEEEEEcC
Confidence 88999999999999999999 55699999985
No 89
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.93 E-value=5.2e-24 Score=206.81 Aligned_cols=277 Identities=10% Similarity=0.093 Sum_probs=189.3
Q ss_pred EEEcCCCcEEEEEeecCcCCCCCCeeeecCCC-cEEEEe-cCCeEEEEeCCCCCCceeeee--ecCCeeEEEEeCCCCCe
Q 013884 30 LWKTETGEAVYQLFQKNMTKTTWPSIRFSSDE-AVACRM-ATNEIQFFDTTDFPKGILYRL--RVPGVAAFEVSKAPGSH 105 (434)
Q Consensus 30 iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~-~~la~~-~~~~i~v~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~~ 105 (434)
+|++.+.+....+..+ ...+.+++|+|++ ++|+++ .++.|+||++........... +...|.+++|+|+++..
T Consensus 57 ~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 133 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPF---DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQ 133 (383)
T ss_dssp HHHHTTCEEEEEECCC---SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEE
T ss_pred cccccccceEEeccCC---CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCE
Confidence 4444556666666554 3677799999999 889888 467999999987654333332 56689999999953455
Q ss_pred EEEEecCCCCCCceEEEEEcCCCCCCCceeeeee---cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEee
Q 013884 106 VAVFVPESKGSPASVQIYACGKDLQSQPLARRSF---FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT 182 (434)
Q Consensus 106 ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~---~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~ 182 (434)
+++ .+.++.|++|++.. ..+..... +...+..+.|+|+|+.|+... .|.. ++.+++
T Consensus 134 l~s-----~~~d~~i~iwd~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~---------i~i~d~ 192 (383)
T 3ei3_B 134 LFV-----SSIRGATTLRDFSG----SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGD---STGR---------LLLLGL 192 (383)
T ss_dssp EEE-----EETTTEEEEEETTS----CEEEEEECCCCSSCCEEEEEEETTTTEEEEEE---TTSE---------EEEEET
T ss_pred EEE-----EeCCCEEEEEECCC----CceEEEeccCCCCCCeEEEEECCCCCEEEEEC---CCCC---------EEEEEC
Confidence 543 24567999999975 23333322 235688999999999865532 3322 334444
Q ss_pred CCCceeeeecCCCCCeEEEEECcCCC-EEEEEEccCCCeEEEEeccc-----eeEEEc-CCcCeeEEEECC-CCCeEEEE
Q 013884 183 DGTHEGLVPLRKEGPVHDVQWSYSGS-EFAVVYGFMPASATIFNKKC-----RPILEL-GSGPYNTVRWNP-KGKFLCLA 254 (434)
Q Consensus 183 ~~~~~~~v~l~~~~~i~~~~wspdg~-~~av~~g~~~~~i~l~d~~~-----~~~~~~-~~~~~~~i~~sP-~g~~l~~~ 254 (434)
.+. .......+.+.|.+++|+|+++ .|+ ++..|+.|++||++. ..+..+ +...+.+++|+| +|++|+++
T Consensus 193 ~~~-~~~~~~~h~~~v~~~~~~~~~~~~l~--s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~ 269 (383)
T 3ei3_B 193 DGH-EIFKEKLHKAKVTHAEFNPRCDWLMA--TSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTT 269 (383)
T ss_dssp TSC-EEEEEECSSSCEEEEEECSSCTTEEE--EEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEE
T ss_pred CCC-EEEEeccCCCcEEEEEECCCCCCEEE--EEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEE
Confidence 332 2222223578999999999999 565 577799999999964 334433 788999999999 99999999
Q ss_pred ecCCCCCeEEEEEccCCEEEEEeeCC--------CceEEEECCCCCEEE---------EEEcCCceeeCCcEEEEee-cC
Q 013884 255 GFGNLPGDMAFWDYVDGKQLGTTRAE--------CSVTSEWSPDGRYFM---------TATTAPRLQIDNGIKIFHH-NG 316 (434)
Q Consensus 255 ~~~~~~g~i~iwd~~~~~~i~~~~~~--------~~~~~~wspdg~~l~---------tas~~~rl~~D~~i~iw~~-~g 316 (434)
+ .+|.|++||+.+++.+..+..+ ..+.+.|+|++..++ +++. |+.|+|||+ +|
T Consensus 270 ~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~------d~~i~iwd~~~~ 340 (383)
T 3ei3_B 270 D---QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLND------KRTIDIYDANSG 340 (383)
T ss_dssp E---SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTC------CCCEEEEETTTC
T ss_pred c---CCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcccccCC------CCeEEEEecCCC
Confidence 8 5579999999877544333321 112234555544444 4445 999999998 56
Q ss_pred ceeeeee----cccceeeEEEcCCCCCCCC
Q 013884 317 SLFFKKM----FDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 317 ~~~~~~~----~~~~~~~~w~p~~~~~~~~ 342 (434)
+++.... ...+..+.|+|++..++..
T Consensus 341 ~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~ 370 (383)
T 3ei3_B 341 GLVHQLRDPNAAGIISLNKFSPTGDVLASG 370 (383)
T ss_dssp CEEEEECBTTBCSCCCEEEECTTSSEEEEE
T ss_pred ceeeeecCCCCCceEEEEEEecCccEEEEe
Confidence 6666553 2346666999998877665
No 90
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.93 E-value=2.1e-23 Score=218.85 Aligned_cols=265 Identities=15% Similarity=0.164 Sum_probs=194.8
Q ss_pred CCCCCCeeeecCCC-cEEEEec-CCeEEEEeCCCCCCc-----eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceE
Q 013884 48 TKTTWPSIRFSSDE-AVACRMA-TNEIQFFDTTDFPKG-----ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASV 120 (434)
Q Consensus 48 ~~~~~~~~~~S~d~-~~la~~~-~~~i~v~~~~~~~~~-----~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v 120 (434)
|...+.+++|++++ .+|++++ |++|++|++...... .....|...|.+++|+|+ +.+++. ++.++.|
T Consensus 381 H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~-g~~l~s-----gs~Dg~v 454 (694)
T 3dm0_A 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD-GQFALS-----GSWDGEL 454 (694)
T ss_dssp CSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTT-SSEEEE-----EETTSEE
T ss_pred CCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCC-CCEEEE-----EeCCCcE
Confidence 44778899999875 6888874 679999998754321 123345667999999998 455543 3567899
Q ss_pred EEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeee---cCCCCC
Q 013884 121 QIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP---LRKEGP 197 (434)
Q Consensus 121 ~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~---l~~~~~ 197 (434)
+||++.+ +..+.....|...+.++.|+|+|+.|+.. ..|.+.+.|.. .+.....+. ..+...
T Consensus 455 ~vwd~~~---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~---s~D~~i~iwd~---------~~~~~~~~~~~~~~h~~~ 519 (694)
T 3dm0_A 455 RLWDLAA---GVSTRRFVGHTKDVLSVAFSLDNRQIVSA---SRDRTIKLWNT---------LGECKYTISEGGEGHRDW 519 (694)
T ss_dssp EEEETTT---TEEEEEEECCSSCEEEEEECTTSSCEEEE---ETTSCEEEECT---------TSCEEEEECSSTTSCSSC
T ss_pred EEEECCC---CcceeEEeCCCCCEEEEEEeCCCCEEEEE---eCCCEEEEEEC---------CCCcceeeccCCCCCCCc
Confidence 9999987 77778888899999999999999986543 35666554432 221111111 124678
Q ss_pred eEEEEECcCCCEEEEEEccCCCeEEEEeccce-eEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEE
Q 013884 198 VHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQL 274 (434)
Q Consensus 198 i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~-~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i 274 (434)
|.+++|+|++....+++++.|+.|++||++.. ....+ |.+.+++++|+|+|++|++++ .+|.|+|||+.+++.+
T Consensus 520 v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~---~Dg~i~iwd~~~~~~~ 596 (694)
T 3dm0_A 520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG---KDGVVLLWDLAEGKKL 596 (694)
T ss_dssp EEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSBCEEEETTTTEEE
T ss_pred EEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEe---CCCeEEEEECCCCceE
Confidence 99999999985323337888999999999643 33344 788999999999999999999 5679999999999998
Q ss_pred EEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce-eeeeec---------------------ccceeeE
Q 013884 275 GTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL-FFKKMF---------------------DKLFQAE 331 (434)
Q Consensus 275 ~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~-~~~~~~---------------------~~~~~~~ 331 (434)
..+..+ .+..++|+|++.+|++++ |++|+|||+.... +..... -.+..+.
T Consensus 597 ~~~~~~~~v~~~~~sp~~~~l~~~~-------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 669 (694)
T 3dm0_A 597 YSLEANSVIHALCFSPNRYWLCAAT-------EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLN 669 (694)
T ss_dssp ECCBCSSCEEEEEECSSSSEEEEEE-------TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEE
T ss_pred EEecCCCcEEEEEEcCCCcEEEEEc-------CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEE
Confidence 888766 445599999999887765 7889999996543 332211 0146789
Q ss_pred EEcCCCCCCCCc
Q 013884 332 WKPVSPDKFGDI 343 (434)
Q Consensus 332 w~p~~~~~~~~~ 343 (434)
|+|++..|++..
T Consensus 670 ~spdg~~l~sgs 681 (694)
T 3dm0_A 670 WSADGSTLFSGY 681 (694)
T ss_dssp ECTTSSEEEEEE
T ss_pred EcCCCCEEEEEc
Confidence 999988887753
No 91
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.93 E-value=2.5e-23 Score=205.10 Aligned_cols=242 Identities=14% Similarity=0.197 Sum_probs=185.2
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|++|+|||+|++|++++ .|+.|+|||+.++++++.+..+. ..+ ..++.++.+|+++. ++.+++|+....
T Consensus 150 V~sv~fspdg~~lasgs-----~Dg~v~iWd~~~~~~~~~~~~h~---~~v--~~~s~~~~~l~sgs~d~~i~~~d~~~~ 219 (420)
T 4gga_A 150 ISSVAWIKEGNYLAVGT-----SSAEVQLWDVQQQKRLRNMTSHS---ARV--GSLSWNSYILSSGSRSGHIHHHDVRVA 219 (420)
T ss_dssp EEEEEECTTSSEEEEEE-----TTSCEEEEETTTTEEEEEECCCS---SCE--EEEEEETTEEEEEETTSEEEEEETTSS
T ss_pred EEEEEECCCCCEEEEEE-----CCCeEEEEEcCCCcEEEEEeCCC---Cce--EEEeeCCCEEEEEeCCCceeEeeeccc
Confidence 78999999999999999 89999999999999999887653 444 34555788998885 579999998764
Q ss_pred CCc-eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC-CCceeeeeecccceeEEEECCCCCeEEE
Q 013884 81 PKG-ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ-SQPLARRSFFRCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 81 ~~~-~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~-~~~i~~~~~~~~~~~~~~ws~~G~~l~~ 158 (434)
... .....+...+..+.++|+ +..++. .+.++.+++|++..... ...+.....+...+..+.|+|.+..+++
T Consensus 220 ~~~~~~~~~h~~~~~~~~~~~~-g~~l~s-----~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la 293 (420)
T 4gga_A 220 EHHVATLSGHSQEVCGLRWAPD-GRHLAS-----GGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA 293 (420)
T ss_dssp SCEEEEEECCSSCEEEEEECTT-SSEEEE-----EETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEE
T ss_pred ceeeEEecccccceeeeeecCC-CCeeee-----eeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEE
Confidence 432 223455667899999998 455543 24567899999876321 2344556667788899999999998887
Q ss_pred EEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc--C
Q 013884 159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--G 235 (434)
Q Consensus 159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~--~ 235 (434)
++....|.+.+.| ++... .....+.....+.++.|+|+++.+++.+|+.++.|.|||.. +..+..+ |
T Consensus 294 ~~~gs~D~~I~iw---------d~~t~-~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH 363 (420)
T 4gga_A 294 TGGGTSDRHIRIW---------NVCSG-ACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH 363 (420)
T ss_dssp EEECTTTCEEEEE---------ETTTT-EEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC
T ss_pred EEeecCCCEEEEE---------eCCcc-ccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC
Confidence 7665556655543 33232 33333444678999999999999998888889999999995 5566666 7
Q ss_pred CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE
Q 013884 236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK 272 (434)
Q Consensus 236 ~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~ 272 (434)
.+.|++++|||||++|++|+ .||+|+|||+.+..
T Consensus 364 ~~~V~~l~~spdg~~l~S~s---~D~tvriWdv~~~~ 397 (420)
T 4gga_A 364 TSRVLSLTMSPDGATVASAA---ADETLRLWRCFELD 397 (420)
T ss_dssp SSCEEEEEECTTSSCEEEEE---TTTEEEEECCSCSS
T ss_pred CCCEEEEEEcCCCCEEEEEe---cCCeEEEEECCCCC
Confidence 89999999999999999999 56799999987653
No 92
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.92 E-value=3.7e-23 Score=204.61 Aligned_cols=246 Identities=10% Similarity=0.168 Sum_probs=174.6
Q ss_pred CCCCCeeeecCC-CcEEEEec-CCeEEEEeCCC----------CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCC
Q 013884 49 KTTWPSIRFSSD-EAVACRMA-TNEIQFFDTTD----------FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGS 116 (434)
Q Consensus 49 ~~~~~~~~~S~d-~~~la~~~-~~~i~v~~~~~----------~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~ 116 (434)
...+.+++|+|+ +.+||++. ++.|++|++.. .........|...+..++|+|++...+++ ++.
T Consensus 128 ~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s-----~~~ 202 (430)
T 2xyi_A 128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLS-----ASD 202 (430)
T ss_dssp SSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEE-----ECT
T ss_pred CCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEE-----EeC
Confidence 367889999997 67888875 67999999865 23333344556678999999986546553 355
Q ss_pred CceEEEEEcCCCCCC-C---ceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCC--ceeee
Q 013884 117 PASVQIYACGKDLQS-Q---PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT--HEGLV 190 (434)
Q Consensus 117 ~~~v~i~~~~~~~~~-~---~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~--~~~~v 190 (434)
++.|++|++...... . .......+...+..+.|+|++..+++.++ .|.. |+.+++... .....
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~--~dg~---------i~i~d~~~~~~~~~~~ 271 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA--DDQK---------LMIWDTRNNNTSKPSH 271 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEE--TTSE---------EEEEETTCSCSSSCSE
T ss_pred CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEe--CCCe---------EEEEECCCCCCCccee
Confidence 689999999762111 1 13344567778899999996555544432 2222 333333322 11222
Q ss_pred ec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc--eeEEEc--CCcCeeEEEECCCCC-eEEEEecCCCCCeEE
Q 013884 191 PL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RPILEL--GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMA 264 (434)
Q Consensus 191 ~l-~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~--~~~~~~--~~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~ 264 (434)
.+ .+..+|.+++|+|++..+++ +|..++.|.+||++. .++..+ |...+.++.|+|+|+ +|++++ .+|.|.
T Consensus 272 ~~~~~~~~v~~i~~~p~~~~~l~-tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~---~d~~i~ 347 (430)
T 2xyi_A 272 TVDAHTAEVNCLSFNPYSEFILA-TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG---TDRRLH 347 (430)
T ss_dssp EEECCSSCEEEEEECSSCTTEEE-EEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEE---TTSCCE
T ss_pred EeecCCCCeEEEEeCCCCCCEEE-EEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEe---CCCcEE
Confidence 22 45789999999999986444 578899999999974 334444 789999999999996 577777 457999
Q ss_pred EEEccC--------------CEEEEEeeCC--CceEEEECCCCC-EEEEEEcCCceeeCCcEEEEeecCceee
Q 013884 265 FWDYVD--------------GKQLGTTRAE--CSVTSEWSPDGR-YFMTATTAPRLQIDNGIKIFHHNGSLFF 320 (434)
Q Consensus 265 iwd~~~--------------~~~i~~~~~~--~~~~~~wspdg~-~l~tas~~~rl~~D~~i~iw~~~g~~~~ 320 (434)
|||+.. .+.+..+.+| .+..++|+|+++ +|++++. |+.|+||++....+.
T Consensus 348 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~------dg~i~iw~~~~~~~~ 414 (430)
T 2xyi_A 348 VWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSE------DNIMQVWQMAENVYN 414 (430)
T ss_dssp EEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEET------TSEEEEEEECHHHHC
T ss_pred EEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEEC------CCCEEEeEccccccc
Confidence 999986 3566666665 467799999999 8888888 999999999776544
No 93
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.5e-24 Score=214.42 Aligned_cols=250 Identities=11% Similarity=0.027 Sum_probs=175.8
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP 81 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~ 81 (434)
|.+|+|||||++|||.+ .|++|+ |...++.+ .+ |...+.+++|+||| .++.+.+|+.....
T Consensus 18 v~sv~~SpDG~~iASas-----~D~TV~--d~~~~~~l---~g---h~~~v~~V~FsPdg------~~~~~~~~~~~~~~ 78 (588)
T 2j04_A 18 KNNLTWARDGTLYLTTF-----PDISIG--QPKYAKDI---NC---NSKNLFHVKEFPLE------FENKLDFELAQQNG 78 (588)
T ss_dssp SCCEEECTTSCEEEECS-----SSEEEE--EECCCSCC---SS---BGGGTEEEEEECCC------CCCTTTTSCCCSSC
T ss_pred EEEEEECCCCCEEEEEc-----CCceee--ccccccee---cC---CCccEEEEEECCCC------CcceEEEEeCCCce
Confidence 68999999999999998 889999 87666554 22 33556699999999 44555555543211
Q ss_pred Cceeee-eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc-----ceeEEEECCCCCe
Q 013884 82 KGILYR-LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC-----STVQLNWNRGSTG 155 (434)
Q Consensus 82 ~~~~~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~-----~~~~~~ws~~G~~ 155 (434)
... .+.+.|.+++|||+ +..+|+ .+.++.|+||+.. ..+.... +.. .+.+++|||||+.
T Consensus 79 ---~~~~~~~~~V~~vawSPd-G~~LAs-----~s~dg~V~iwd~~-----~~l~~l~-~~~~~~~~sv~svafSPDG~~ 143 (588)
T 2j04_A 79 ---LLNSQPVCYPRVCKPSPI-DDWMAV-----LSNNGNVSVFKDN-----KMLTNLD-SKGNLSSRTYHCFEWNPIESS 143 (588)
T ss_dssp ---SSTTSCSCCEEEEEECSS-SSCEEE-----EETTSCEEEEETT-----EEEEECC-CSSCSTTTCEEEEEECSSSSC
T ss_pred ---EeecCCCCcEEEEEECCC-CCEEEE-----EeCCCcEEEEeCC-----ceeeecc-CCCccccccEEEEEEcCCCCE
Confidence 111 22567999999999 566664 2456789999952 3444444 443 4779999999999
Q ss_pred EEEEEEecccccCceeecceeEEEEeeCCCc--------eeeee---cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 013884 156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTH--------EGLVP---LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIF 224 (434)
Q Consensus 156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~--------~~~v~---l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~ 224 (434)
|++.. .|.+.+ ||.+. ++. ...+. -.+...|.+++||||| ++ ++..|+.+++|
T Consensus 144 LAsgs---~DGtVk-------IWd~~--~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--La--ass~D~tVrlW 207 (588)
T 2j04_A 144 IVVGN---EDGELQ-------FFSIR--KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LV--AALSNNSVFSM 207 (588)
T ss_dssp EEEEE---TTSEEE-------EEECC--CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EE--EEETTCCEEEE
T ss_pred EEEEc---CCCEEE-------EEECC--CCccccccceeeeeeecccccccccEEEEEEcCCc--EE--EEeCCCeEEEE
Confidence 76643 454444 33332 221 01111 2245799999999999 44 46668999999
Q ss_pred eccceeE----E---EcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE-EEEeeCC-CceEEEE--CCCCCE
Q 013884 225 NKKCRPI----L---ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ-LGTTRAE-CSVTSEW--SPDGRY 293 (434)
Q Consensus 225 d~~~~~~----~---~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~-i~~~~~~-~~~~~~w--spdg~~ 293 (434)
|+..+.. . ..|...|.+++|+ |+.||+++ + |+|++||+.+++. ...+.+. .+..++| +|||..
T Consensus 208 d~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~---~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~ 281 (588)
T 2j04_A 208 TVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-P---GYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTI 281 (588)
T ss_dssp CCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-S---SEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEE
T ss_pred ECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-C---CeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCE
Confidence 9975442 1 2466789999999 78888886 2 6999999999877 4443332 5566999 999999
Q ss_pred EEEEEcCCceeeCCcEEEEee
Q 013884 294 FMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 294 l~tas~~~rl~~D~~i~iw~~ 314 (434)
|++|.. ||+ ++|.+
T Consensus 282 La~a~e------dG~-klw~~ 295 (588)
T 2j04_A 282 LLMSNK------TSY-KVLLE 295 (588)
T ss_dssp EEECSS------CEE-EEEES
T ss_pred EEEEcC------CCC-EEEee
Confidence 999997 777 77775
No 94
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.92 E-value=2.5e-22 Score=199.22 Aligned_cols=283 Identities=12% Similarity=0.134 Sum_probs=207.2
Q ss_pred EecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCce
Q 013884 6 TCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGI 84 (434)
Q Consensus 6 ~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~ 84 (434)
+++++|++|++++ .|+.|+|||+.+++.+..+..+. ..+.++.|+ +.+++++ .+++|++||+.+.....
T Consensus 124 ~~~~~g~~l~sg~-----~dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~ 193 (445)
T 2ovr_B 124 CLQFCGNRIVSGS-----DDNTLKVWSAVTGKCLRTLVGHT---GGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIH 193 (445)
T ss_dssp EEEEETTEEEEEE-----TTSCEEEEETTTCCEEEECCCCS---SCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEE
T ss_pred EEEEcCCEEEEEE-----CCCcEEEEECCCCcEEEEEcCCC---CCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEE
Confidence 3566799999999 89999999999999998887653 566688887 5577776 57899999998765444
Q ss_pred eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecc
Q 013884 85 LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDV 164 (434)
Q Consensus 85 ~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~ 164 (434)
....+...|..+.++++ .+++ ++.++.|++|++.. .+.+.....+...+.++.| +|..+++.. .
T Consensus 194 ~~~~h~~~v~~~~~~~~---~l~s-----~s~dg~i~~wd~~~---~~~~~~~~~~~~~v~~~~~--~~~~l~~~~---~ 257 (445)
T 2ovr_B 194 TLYGHTSTVRCMHLHEK---RVVS-----GSRDATLRVWDIET---GQCLHVLMGHVAAVRCVQY--DGRRVVSGA---Y 257 (445)
T ss_dssp EECCCSSCEEEEEEETT---EEEE-----EETTSEEEEEESSS---CCEEEEEECCSSCEEEEEE--CSSCEEEEE---T
T ss_pred EECCCCCcEEEEEecCC---EEEE-----EeCCCEEEEEECCC---CcEEEEEcCCcccEEEEEE--CCCEEEEEc---C
Confidence 44455667888888743 3332 34568999999988 7778888888888889998 677655432 3
Q ss_pred cccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc--CCcCee
Q 013884 165 DKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYN 240 (434)
Q Consensus 165 d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~--~~~~~~ 240 (434)
|..... ++.... .....+ .+.+.|.+++| ++..++ ++..++.+.+||++ +..+..+ +...+.
T Consensus 258 dg~i~i---------wd~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~--~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~ 323 (445)
T 2ovr_B 258 DFMVKV---------WDPETE-TCLHTLQGHTNRVYSLQF--DGIHVV--SGSLDTSIRVWDVETGNCIHTLTGHQSLTS 323 (445)
T ss_dssp TSCEEE---------EEGGGT-EEEEEECCCSSCEEEEEE--CSSEEE--EEETTSCEEEEETTTCCEEEEECCCCSCEE
T ss_pred CCEEEE---------EECCCC-cEeEEecCCCCceEEEEE--CCCEEE--EEeCCCeEEEEECCCCCEEEEEcCCcccEE
Confidence 444333 332222 222222 34688999999 777777 57789999999996 4445555 556666
Q ss_pred EEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC---C--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884 241 TVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA---E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 241 ~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~---~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~ 315 (434)
++.+ ++++|++++ .+|.|++||+.+++.+..+.. + .+..++|+ +++|++++. |+.|+|||+.
T Consensus 324 ~~~~--~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~------dg~v~iwd~~ 390 (445)
T 2ovr_B 324 GMEL--KDNILVSGN---ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSD------DGTVKLWDLK 390 (445)
T ss_dssp EEEE--ETTEEEEEE---TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEET------TSEEEEEETT
T ss_pred EEEE--eCCEEEEEe---CCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeC------CCeEEEEECC
Confidence 6665 577999998 567999999999998888875 3 45557885 689999999 9999999984
Q ss_pred -Cceeeee-------ecccceeeEEEcCCCCCCC
Q 013884 316 -GSLFFKK-------MFDKLFQAEWKPVSPDKFG 341 (434)
Q Consensus 316 -g~~~~~~-------~~~~~~~~~w~p~~~~~~~ 341 (434)
|+.+... +...++.+.|+|++..+..
T Consensus 391 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~ 424 (445)
T 2ovr_B 391 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAV 424 (445)
T ss_dssp TCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEE
T ss_pred CCceeeeeeccccCCCCceEEEEEecCCEEEEEE
Confidence 5555544 2246899999998765544
No 95
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.92 E-value=1e-22 Score=198.12 Aligned_cols=260 Identities=16% Similarity=0.210 Sum_probs=187.2
Q ss_pred CCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCC------CceeeeeecCCeeEEEEeCC----CC--CeEEEEecCCC
Q 013884 48 TKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFP------KGILYRLRVPGVAAFEVSKA----PG--SHVAVFVPESK 114 (434)
Q Consensus 48 ~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~------~~~~~~~~~~~v~~~~~sp~----~~--~~ia~~~~~~~ 114 (434)
|...+.+++|+| ++|+++ .++.|++|++.... .......+...|.++.|+|+ +. ..+++ .
T Consensus 15 h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s-----~ 87 (397)
T 1sq9_A 15 HDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT-----T 87 (397)
T ss_dssp SSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE-----E
T ss_pred hhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEE-----E
Confidence 457888999999 677776 57899999998765 33334455668999999997 30 33432 2
Q ss_pred CCCceEEEEEcCCCCCCCc-----eeeeeec-----ccceeEEEEC----CCCCe-EEEEEEecccccCceeecceeEEE
Q 013884 115 GSPASVQIYACGKDLQSQP-----LARRSFF-----RCSTVQLNWN----RGSTG-LLAVAQSDVDKTNQSYYGESKLNY 179 (434)
Q Consensus 115 ~~~~~v~i~~~~~~~~~~~-----i~~~~~~-----~~~~~~~~ws----~~G~~-l~~~~~~~~d~~~~~~~g~~~l~~ 179 (434)
+.++.|++|++.. ... +.....+ ...+..+.|+ |+|+. |++. + .|.... +|.
T Consensus 88 ~~dg~i~iw~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~-~--~dg~i~-------iwd 154 (397)
T 1sq9_A 88 SFSGDLLFYRITR---EDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVAT-D--VKGTTY-------IWK 154 (397)
T ss_dssp ETTSCEEEEEEEE---CTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEE-E--TTSCEE-------EEE
T ss_pred cCCCCEEEEEccC---CcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEE-e--CCCcEE-------EEe
Confidence 3457899999987 454 6666667 5788999999 99998 5543 2 233222 344
Q ss_pred Eee------CCCcee-----eee------cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc-----C-
Q 013884 180 LTT------DGTHEG-----LVP------LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL-----G- 235 (434)
Q Consensus 180 l~~------~~~~~~-----~v~------l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~-----~- 235 (434)
+.. ... .. .+. ..+...|.+++|+|++ .|+ ++..++.+.+||++ ...+..+ |
T Consensus 155 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~--~~~~dg~i~i~d~~~~~~~~~~~~~~~h~ 230 (397)
T 1sq9_A 155 FHPFADESNSLT-LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIA--TGFNNGTVQISELSTLRPLYNFESQHSMI 230 (397)
T ss_dssp EESSSSHHHHTT-TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEE--EECTTSEEEEEETTTTEEEEEEECCC---
T ss_pred CCccccccccce-eeccCcceeeeeeccccCCCCCceEEEECCCc-eEE--EEeCCCcEEEEECCCCceeEEEecccccc
Confidence 332 111 11 111 2347889999999999 666 57889999999996 4444443 4
Q ss_pred --CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC-------------C--CceEEEECCCCCEEEEEE
Q 013884 236 --SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-------------E--CSVTSEWSPDGRYFMTAT 298 (434)
Q Consensus 236 --~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~-------------~--~~~~~~wspdg~~l~tas 298 (434)
...+.+++|+|+|++|++++.++..|.|++||+.+++.+..+.. | .+..++|+|+|++|++++
T Consensus 231 ~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 310 (397)
T 1sq9_A 231 NNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG 310 (397)
T ss_dssp CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE
T ss_pred ccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEe
Confidence 78899999999999999998431127999999999988888865 4 566799999999999999
Q ss_pred cCCceeeCCcEEEEee-cCceeeeee-----------------------cccceeeEEEcCCC
Q 013884 299 TAPRLQIDNGIKIFHH-NGSLFFKKM-----------------------FDKLFQAEWKPVSP 337 (434)
Q Consensus 299 ~~~rl~~D~~i~iw~~-~g~~~~~~~-----------------------~~~~~~~~w~p~~~ 337 (434)
. |+.|+|||+ +++++.... ...+..+.|.|++.
T Consensus 311 ~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~ 367 (397)
T 1sq9_A 311 W------DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW 367 (397)
T ss_dssp T------TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTT
T ss_pred C------CCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccc
Confidence 9 999999999 455555544 45799999999973
No 96
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.92 E-value=6.1e-23 Score=203.18 Aligned_cols=260 Identities=12% Similarity=0.117 Sum_probs=188.9
Q ss_pred EecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCce
Q 013884 6 TCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGI 84 (434)
Q Consensus 6 ~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~ 84 (434)
+++++|++|++++ .|+.|+|||+.+++.+..+..+. ..+.+++| |+++|++++ +++|++||+.+.....
T Consensus 138 ~~~~d~~~l~~g~-----~dg~i~iwd~~~~~~~~~~~~h~---~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~ 207 (435)
T 1p22_A 138 CLQYDDQKIVSGL-----RDNTIKIWDKNTLECKRILTGHT---GSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN 207 (435)
T ss_dssp EEECCSSEEEEEE-----SSSCEEEEESSSCCEEEEECCCS---SCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEE
T ss_pred EEEECCCEEEEEe-----CCCeEEEEeCCCCeEEEEEcCCC---CcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEE
Confidence 3455999999999 89999999999999988887653 56668888 888888884 6799999998866544
Q ss_pred eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCce---eeeeecccceeEEEECCCCCeEEEEEE
Q 013884 85 LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPL---ARRSFFRCSTVQLNWNRGSTGLLAVAQ 161 (434)
Q Consensus 85 ~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i---~~~~~~~~~~~~~~ws~~G~~l~~~~~ 161 (434)
....+...|..+.|+++ .++. ++.++.|++|++.. ...+ .....+...+..+.| +|+.+++..
T Consensus 208 ~~~~h~~~v~~l~~~~~---~l~s-----~s~dg~i~vwd~~~---~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~- 273 (435)
T 1p22_A 208 TLIHHCEAVLHLRFNNG---MMVT-----CSKDRSIAVWDMAS---PTDITLRRVLVGHRAAVNVVDF--DDKYIVSAS- 273 (435)
T ss_dssp EECCCCSCEEEEECCTT---EEEE-----EETTSCEEEEECSS---SSCCEEEEEECCCSSCEEEEEE--ETTEEEEEE-
T ss_pred EEcCCCCcEEEEEEcCC---EEEE-----eeCCCcEEEEeCCC---CCCceeeeEecCCCCcEEEEEe--CCCEEEEEe-
Confidence 44556677999998753 3432 24567999999987 4433 455567778888888 677655432
Q ss_pred ecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc--CCcC
Q 013884 162 SDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGP 238 (434)
Q Consensus 162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~--~~~~ 238 (434)
.|... ..++..........-.+.+.|.+++|+ ++.++ +|..++.|++||++ +..+..+ |...
T Consensus 274 --~dg~i---------~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~--~g~~dg~i~iwd~~~~~~~~~~~~h~~~ 338 (435)
T 1p22_A 274 --GDRTI---------KVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVV--SGSSDNTIRLWDIECGACLRVLEGHEEL 338 (435)
T ss_dssp --TTSEE---------EEEETTTCCEEEEEECCSSCEEEEEEE--TTEEE--EEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred --CCCeE---------EEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEE--EEeCCCeEEEEECCCCCEEEEEeCCcCc
Confidence 33333 333333321111112346789999994 56666 57789999999997 4455555 6788
Q ss_pred eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE---------EEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCC
Q 013884 239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK---------QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDN 307 (434)
Q Consensus 239 ~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~---------~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~ 307 (434)
+.++.| +|++|++++ .+|.|++||+.+++ .+..+.+| .+..++| ||.+|++++. |+
T Consensus 339 v~~~~~--~~~~l~sg~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~------Dg 405 (435)
T 1p22_A 339 VRCIRF--DNKRIVSGA---YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSH------DD 405 (435)
T ss_dssp EEEEEC--CSSEEEEEE---TTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCS------SS
T ss_pred EEEEEe--cCCEEEEEe---CCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeC------CC
Confidence 999999 789999998 56799999987654 77777766 4556888 8899999999 99
Q ss_pred cEEEEeecCc
Q 013884 308 GIKIFHHNGS 317 (434)
Q Consensus 308 ~i~iw~~~g~ 317 (434)
.|+|||+...
T Consensus 406 ~i~iwd~~~~ 415 (435)
T 1p22_A 406 TILIWDFLND 415 (435)
T ss_dssp EEEEEC----
T ss_pred EEEEEECCCC
Confidence 9999999664
No 97
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.2e-22 Score=202.04 Aligned_cols=253 Identities=13% Similarity=0.043 Sum_probs=182.6
Q ss_pred CCCeeeecCCCcEEEEecCCeEEEEeCCCCC---Cceeeee---------------------------------------
Q 013884 51 TWPSIRFSSDEAVACRMATNEIQFFDTTDFP---KGILYRL--------------------------------------- 88 (434)
Q Consensus 51 ~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~---~~~~~~~--------------------------------------- 88 (434)
.+.+++|++||++|+++.++.|++||+.+.. .......
T Consensus 6 p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (450)
T 2vdu_B 6 PLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIK 85 (450)
T ss_dssp CCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-------------------------------------
T ss_pred cEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccc
Confidence 4568999999999998889999999987655 1111110
Q ss_pred ---------------ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC--CCCCCCceeeee--ecccceeEEEE
Q 013884 89 ---------------RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG--KDLQSQPLARRS--FFRCSTVQLNW 149 (434)
Q Consensus 89 ---------------~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~--~~~~~~~i~~~~--~~~~~~~~~~w 149 (434)
+...|.+++|+|++..++++ ++.++.|+||++. . +..+.... .+...+..+.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-----~~~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~v~~~~~ 157 (450)
T 2vdu_B 86 RTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIAC-----ADSDKSLLVFDVDKTS---KNVLKLRKRFCFSKRPNAISI 157 (450)
T ss_dssp --------------CCCCCEEEEEECTTSSEEEEE-----EGGGTEEEEEEECSSS---SSCEEEEEEEECSSCEEEEEE
T ss_pred ccCccccCCCCCCCccCCceEEEEEcCCCCEEEEE-----ECCCCeEEEEECcCCC---CceeeeeecccCCCCceEEEE
Confidence 11158999999994333343 2356799999998 5 56666554 44577889999
Q ss_pred CCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceee----eecCCCCCeEEEEECcC---CCEEEEEEccCCCeEE
Q 013884 150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL----VPLRKEGPVHDVQWSYS---GSEFAVVYGFMPASAT 222 (434)
Q Consensus 150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~----v~l~~~~~i~~~~wspd---g~~~av~~g~~~~~i~ 222 (434)
+|+|+.|++.. .+ | .++.+++....... ....+.+.|.+++|+|+ ++.|+ +++.|+.|+
T Consensus 158 sp~~~~l~~~~---~~-------g--~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~--s~~~d~~i~ 223 (450)
T 2vdu_B 158 AEDDTTVIIAD---KF-------G--DVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFII--TSDRDEHIK 223 (450)
T ss_dssp CTTSSEEEEEE---TT-------S--EEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEE--EEETTSCEE
T ss_pred cCCCCEEEEEe---CC-------C--cEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEE--EEcCCCcEE
Confidence 99999876642 11 1 24445443322111 11235789999999999 77777 577899999
Q ss_pred EEeccc-eeEEE-c--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC------------------
Q 013884 223 IFNKKC-RPILE-L--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE------------------ 280 (434)
Q Consensus 223 l~d~~~-~~~~~-~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~------------------ 280 (434)
+||++. ..+.. + |...+++++|+ +|++|++++ .+|.|+|||+.+++.+..+..+
T Consensus 224 vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~---~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (450)
T 2vdu_B 224 ISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAG---GDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQ 299 (450)
T ss_dssp EEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEE---SSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC-----
T ss_pred EEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEe---CCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccc
Confidence 999963 34444 2 67899999999 999999999 5679999999999887776521
Q ss_pred ---------CceEEEECCCCCEEEEEE-cCCceeeCCcEEEEee--c-C---ceeeeee-cccceeeEEEcC
Q 013884 281 ---------CSVTSEWSPDGRYFMTAT-TAPRLQIDNGIKIFHH--N-G---SLFFKKM-FDKLFQAEWKPV 335 (434)
Q Consensus 281 ---------~~~~~~wspdg~~l~tas-~~~rl~~D~~i~iw~~--~-g---~~~~~~~-~~~~~~~~w~p~ 335 (434)
.+..++|+|||++|++++ . |+.|+||++ . + ..+.... ...+..+.|.|.
T Consensus 300 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~~------d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~ 365 (450)
T 2vdu_B 300 NENNDIIEFAVSKIIKSKNLPFVAFFVEA------TKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHND 365 (450)
T ss_dssp -----CBCCCEEEEEECSSSSEEEEEETT------CSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETT
T ss_pred ccccccceEEEEEEEEeCCCCEEEEEECC------CCeEEEEEeccCCCCceeeccEeccCCceEEEEecCC
Confidence 355699999999999999 6 999999999 3 2 2222222 257899999994
No 98
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.92 E-value=8.8e-23 Score=195.19 Aligned_cols=262 Identities=11% Similarity=0.125 Sum_probs=184.9
Q ss_pred CCCCCCeeeecCCCcEEE-Eec----CCeEEEEeCCCCCCceeee-eecCCeeEEEEeCCC--CCeEEEEecCCCCCCce
Q 013884 48 TKTTWPSIRFSSDEAVAC-RMA----TNEIQFFDTTDFPKGILYR-LRVPGVAAFEVSKAP--GSHVAVFVPESKGSPAS 119 (434)
Q Consensus 48 ~~~~~~~~~~S~d~~~la-~~~----~~~i~v~~~~~~~~~~~~~-~~~~~v~~~~~sp~~--~~~ia~~~~~~~~~~~~ 119 (434)
|...+.+++|+||+..++ ++. ++.|+||++.......... .+...|.+++|+|+. +..+++ ++.++.
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~-----~~~dg~ 91 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLAT-----GDFGGN 91 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEE-----EETTSC
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEE-----ecCCCe
Confidence 347788999999996554 442 6799999998755322222 355689999999984 355543 245678
Q ss_pred EEEEEcCCCCCCC-ceeeeeecccceeEEE------ECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec
Q 013884 120 VQIYACGKDLQSQ-PLARRSFFRCSTVQLN------WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL 192 (434)
Q Consensus 120 v~i~~~~~~~~~~-~i~~~~~~~~~~~~~~------ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l 192 (434)
|++|++.. .. .+.....|...+..+. |+++|+.|+... .|...+ .+++.........+
T Consensus 92 i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~---~d~~i~---------vwd~~~~~~~~~~~ 156 (357)
T 3i2n_A 92 LHIWNLEA---PEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGS---RDGTVK---------VWDPRQKDDPVANM 156 (357)
T ss_dssp EEEECTTS---CSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEE---TTSCEE---------EECTTSCSSCSEEE
T ss_pred EEEEeCCC---CCccEEEEEecccceEEEeeccccccCCCccEEEEEe---CCCeEE---------EEeCCCCCCcceec
Confidence 99999987 44 7777778888888885 578898865432 333333 33332221111111
Q ss_pred C-----CCCCeEEEE----ECcCCCEEEEEEccCCCeEEEEeccceeEEE--cCCcCeeEEEECC---CCCeEEEEecCC
Q 013884 193 R-----KEGPVHDVQ----WSYSGSEFAVVYGFMPASATIFNKKCRPILE--LGSGPYNTVRWNP---KGKFLCLAGFGN 258 (434)
Q Consensus 193 ~-----~~~~i~~~~----wspdg~~~av~~g~~~~~i~l~d~~~~~~~~--~~~~~~~~i~~sP---~g~~l~~~~~~~ 258 (434)
. ....+.+++ |+|+++.|+ ++..++.+.+||++...... .+...++++.|+| ++++|++++
T Consensus 157 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~--~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~--- 231 (357)
T 3i2n_A 157 EPVQGENKRDCWTVAFGNAYNQEERVVC--AGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATS--- 231 (357)
T ss_dssp CCCTTSCCCCEEEEEEECCCC-CCCEEE--EEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEE---
T ss_pred cccCCCCCCceEEEEEEeccCCCCCEEE--EEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEEC---
Confidence 1 134788888 789999888 47778999999997544332 2688999999999 999999998
Q ss_pred CCCeEEEEEccCCEEEEEe-----eCC--CceEEEECCCCC-EEEEEEcCCceeeCCcEEEEeecC--------------
Q 013884 259 LPGDMAFWDYVDGKQLGTT-----RAE--CSVTSEWSPDGR-YFMTATTAPRLQIDNGIKIFHHNG-------------- 316 (434)
Q Consensus 259 ~~g~i~iwd~~~~~~i~~~-----~~~--~~~~~~wspdg~-~l~tas~~~rl~~D~~i~iw~~~g-------------- 316 (434)
.+|.|++||+.+++.+..+ ..| .+..++|+|+|+ +|++++. |+.|+||++..
T Consensus 232 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~g~~~ 305 (357)
T 3i2n_A 232 LEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGG------AGGLHLWKYEYPIQRSKKDSEGIEM 305 (357)
T ss_dssp STTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEET------TSEEEEEEEECCSCC--CCTTSCCC
T ss_pred CCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeC------CCcEEEeecCCCcccccccCCCCcc
Confidence 5679999999876433222 244 566799999999 8999998 99999999953
Q ss_pred ------ceeeee--ecccceeeEEEcCCCCCC
Q 013884 317 ------SLFFKK--MFDKLFQAEWKPVSPDKF 340 (434)
Q Consensus 317 ------~~~~~~--~~~~~~~~~w~p~~~~~~ 340 (434)
+++... +...+..+.|.|++..++
T Consensus 306 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 337 (357)
T 3i2n_A 306 GVAGSVSLLQNVTLSTQPISSLDWSPDKRGLC 337 (357)
T ss_dssp CCCCEEEEEEEEECCSSCEEEEEECSSSTTEE
T ss_pred ccccccceeeccccCCCCeeEEEEcCCCCeEE
Confidence 122222 445799999999998887
No 99
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=2e-23 Score=219.74 Aligned_cols=312 Identities=12% Similarity=0.044 Sum_probs=198.0
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----------Ce
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----------NE 71 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----------~~ 71 (434)
+.+++|||||++|++ + .|++|++||+.+|++...+..+......+..++|||||++|+++.+ +.
T Consensus 19 ~~~~~~spdg~~~~~-~-----~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-E-----QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCBSSSSCBCCC-C-----SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred ccccEEcCCCcEEEE-e-----CCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence 467899999998865 4 5789999999999887666544311113668999999999998854 68
Q ss_pred EEEEeCCCCCCceeeee---ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc-----
Q 013884 72 IQFFDTTDFPKGILYRL---RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS----- 143 (434)
Q Consensus 72 i~v~~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~----- 143 (434)
|.+||+..... ..... +...+..++|||+ +..+++... ..|.+|++.. +............
T Consensus 93 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPd-G~~la~~~~------~~i~~~~~~~---g~~~~~~~~~~~~~~~~g 161 (723)
T 1xfd_A 93 YVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPK-GQQLIFIFE------NNIYYCAHVG---KQAIRVVSTGKEGVIYNG 161 (723)
T ss_dssp EEEEESSSCCC-EECCCTTCCSCCCSBCCBCSS-TTCEEEEET------TEEEEESSSS---SCCEEEECCCBTTTEEEE
T ss_pred EEEEECCCCce-EeccCCccccccccccEECCC-CCEEEEEEC------CeEEEEECCC---CceEEEecCCCCCceECc
Confidence 99999987543 11111 1123778999999 555655432 4789999876 4433322222221
Q ss_pred -------------eeEEEECCCCCeEEEEEEecccccCcee------------------------ecceeEEEEeeCCCc
Q 013884 144 -------------TVQLNWNRGSTGLLAVAQSDVDKTNQSY------------------------YGESKLNYLTTDGTH 186 (434)
Q Consensus 144 -------------~~~~~ws~~G~~l~~~~~~~~d~~~~~~------------------------~g~~~l~~l~~~~~~ 186 (434)
...+.|||||+.|++....+.. ...| .....|+.+++.+..
T Consensus 162 ~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~ 239 (723)
T 1xfd_A 162 LSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSR--VPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT 239 (723)
T ss_dssp ECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTT--SCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC
T ss_pred ccceeEEEEeccCcceEEECCCCCEEEEEEECCCc--cceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc
Confidence 2579999999998876533211 1000 012367777776653
Q ss_pred eeeeecC-------CCCCeEEEEECcCCCEEEEEEcc--CCCeEEEEeccceeEEE---c-CCcCee----EEEECCCCC
Q 013884 187 EGLVPLR-------KEGPVHDVQWSYSGSEFAVVYGF--MPASATIFNKKCRPILE---L-GSGPYN----TVRWNPKGK 249 (434)
Q Consensus 187 ~~~v~l~-------~~~~i~~~~wspdg~~~av~~g~--~~~~i~l~d~~~~~~~~---~-~~~~~~----~i~~sP~g~ 249 (434)
....+. ....+.+++|||||+.+++.... .+..|.+||+....... . +.+.+. .++|||||+
T Consensus 240 -~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~ 318 (723)
T 1xfd_A 240 -HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGR 318 (723)
T ss_dssp -CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSC
T ss_pred -eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCC
Confidence 212222 14568899999999977654322 23478999986543222 2 233333 789999999
Q ss_pred eEEEE-ecCCCCC------eEEEEE-ccCCE--EEEEee-CC-CceE-EEECCCCCEEEEEEcCCceeeC--CcEEEEee
Q 013884 250 FLCLA-GFGNLPG------DMAFWD-YVDGK--QLGTTR-AE-CSVT-SEWSPDGRYFMTATTAPRLQID--NGIKIFHH 314 (434)
Q Consensus 250 ~l~~~-~~~~~~g------~i~iwd-~~~~~--~i~~~~-~~-~~~~-~~wspdg~~l~tas~~~rl~~D--~~i~iw~~ 314 (434)
.|++. +.. +| .|++|| ..+++ +...+. ++ .+.. ++|||||++|++.+.. + +.++||++
T Consensus 319 ~l~~~~~~~--~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~-----~~~~~~~l~~~ 391 (723)
T 1xfd_A 319 KFFFIRAIP--QGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTE-----DLPRRRQLYSA 391 (723)
T ss_dssp SEEEEEEEC--CSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESS-----SCTTCCEEEEE
T ss_pred eEEEEEecc--cCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcC-----CCCcceEEEEE
Confidence 88875 322 24 677888 44444 133333 23 3443 6999999999888772 3 78999998
Q ss_pred c--Cc-eeeee-----ecccceeeEEEcCCCCCC
Q 013884 315 N--GS-LFFKK-----MFDKLFQAEWKPVSPDKF 340 (434)
Q Consensus 315 ~--g~-~~~~~-----~~~~~~~~~w~p~~~~~~ 340 (434)
+ |. ..... +...+..+.|+|++..++
T Consensus 392 ~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~ 425 (723)
T 1xfd_A 392 NTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFL 425 (723)
T ss_dssp CSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEE
T ss_pred eCCCCCCcceecccccCCCCeEEEEECCCCCEEE
Confidence 4 32 22221 133577899999887554
No 100
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.91 E-value=4.5e-24 Score=206.54 Aligned_cols=238 Identities=11% Similarity=0.121 Sum_probs=167.2
Q ss_pred CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC--CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884 50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF--PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
..+.+++|+||+++|+++ .++.|+||++... ........|...|.+++|+|++ ..++. .+.++.|++|++.
T Consensus 12 ~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s-----~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 12 KPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS-NRIVT-----CSQDRNAYVYEKR 85 (377)
T ss_dssp SCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT-CCEEE-----EETTSSEEEC---
T ss_pred CcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC-CEEEE-----EeCCCeEEEEEcC
Confidence 567799999999999998 5789999999864 2223344556789999999994 44443 2456789999998
Q ss_pred CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCc--eeeeecCCCCCeEEEEEC
Q 013884 127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH--EGLVPLRKEGPVHDVQWS 204 (434)
Q Consensus 127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l~~~~~i~~~~ws 204 (434)
.......+.....+...+..+.|+|+|+.|+... .|...+. |.++..... ...+.-.+.+.|.+++|+
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~i-------wd~~~~~~~~~~~~~~~~h~~~v~~~~~~ 155 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGS---GARVISV-------CYFEQENDWWVSKHLKRPLRSTILSLDWH 155 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSSCCEEEE---SSSCEEE-------CCC-----CCCCEEECSSCCSCEEEEEEC
T ss_pred CCCceeeeeEecccCCceEEEEECCCCCEEEEEe---cCCeEEE-------EEECCcccceeeeEeecccCCCeEEEEEc
Confidence 7211125556667888999999999999876542 3433332 222211110 112222257899999999
Q ss_pred cCCCEEEEEEccCCCeEEEEecc-------------------ceeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEE
Q 013884 205 YSGSEFAVVYGFMPASATIFNKK-------------------CRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMA 264 (434)
Q Consensus 205 pdg~~~av~~g~~~~~i~l~d~~-------------------~~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~ 264 (434)
|+++.|+ ++..|+.+++||++ ...+..+ |...+++++|+|+|++|++++ .+|.|+
T Consensus 156 ~~~~~l~--~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~---~d~~i~ 230 (377)
T 3dwl_C 156 PNNVLLA--AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAG---HDSSVT 230 (377)
T ss_dssp TTSSEEE--EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEE---TTTEEC
T ss_pred CCCCEEE--EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEe---CCCcEE
Confidence 9999888 57778999999984 3333343 677899999999999999998 567999
Q ss_pred EEEccCCEE----EEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884 265 FWDYVDGKQ----LGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 265 iwd~~~~~~----i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~ 315 (434)
+||+.+++. +..+..| .+..++|+|||++|++++ |+.+.+|+..
T Consensus 231 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-------~~~~~~~~~~ 280 (377)
T 3dwl_C 231 IAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGY-------NYSPILLQGN 280 (377)
T ss_dssp -CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEES-------SSSEEEECCC
T ss_pred EEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEc-------CCcEEEEEeC
Confidence 999998865 6666665 456799999999998886 5555588775
No 101
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.91 E-value=1.6e-21 Score=189.46 Aligned_cols=246 Identities=10% Similarity=0.024 Sum_probs=175.1
Q ss_pred cceEEecCCCcEE-EEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-c-CCeEEEEeCC
Q 013884 2 LLLLTCLRVGLII-QTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-A-TNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L-~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~-~~~i~v~~~~ 78 (434)
+.+++|||+|++| ++.+ .|+.|++||+.+++.+..+..+ ..+.+++|+||+++|+.+ . ++.|++||+.
T Consensus 34 ~~~~~~s~dg~~l~~~~~-----~d~~i~v~d~~~~~~~~~~~~~----~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~ 104 (391)
T 1l0q_A 34 PMGAVISPDGTKVYVANA-----HSNDVSIIDTATNNVIATVPAG----SSPQGVAVSPDGKQVYVTNMASSTLSVIDTT 104 (391)
T ss_dssp EEEEEECTTSSEEEEEEG-----GGTEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred cceEEECCCCCEEEEECC-----CCCeEEEEECCCCeEEEEEECC----CCccceEECCCCCEEEEEECCCCEEEEEECC
Confidence 5789999999988 4554 5789999999999998887664 355689999999987654 3 4799999998
Q ss_pred CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013884 79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~ 158 (434)
....... ......+..++|+|++ ..+.+. ...++.|++|++.+ .+.+.....+ .....+.|+|+|+.|++
T Consensus 105 ~~~~~~~-~~~~~~~~~~~~s~dg-~~l~~~----~~~~~~v~~~d~~~---~~~~~~~~~~-~~~~~~~~~~dg~~l~~ 174 (391)
T 1l0q_A 105 SNTVAGT-VKTGKSPLGLALSPDG-KKLYVT----NNGDKTVSVINTVT---KAVINTVSVG-RSPKGIAVTPDGTKVYV 174 (391)
T ss_dssp TTEEEEE-EECSSSEEEEEECTTS-SEEEEE----ETTTTEEEEEETTT---TEEEEEEECC-SSEEEEEECTTSSEEEE
T ss_pred CCeEEEE-EeCCCCcceEEECCCC-CEEEEE----eCCCCEEEEEECCC---CcEEEEEecC-CCcceEEECCCCCEEEE
Confidence 7543221 1224468899999984 444222 23457999999977 5555555443 45578999999998765
Q ss_pred EEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEcc-CCCeEEEEeccc-eeEEEc-C
Q 013884 159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF-MPASATIFNKKC-RPILEL-G 235 (434)
Q Consensus 159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~-~~~~i~l~d~~~-~~~~~~-~ 235 (434)
... .+. .++.++.... .....+.....+..++|+|+|+.+++.... .++.+.+||++. ..+..+ .
T Consensus 175 ~~~--~~~---------~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~ 242 (391)
T 1l0q_A 175 ANF--DSM---------SISVIDTVTN-SVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV 242 (391)
T ss_dssp EET--TTT---------EEEEEETTTT-EEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC
T ss_pred EeC--CCC---------EEEEEECCCC-eEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec
Confidence 432 111 2455555443 233333445678999999999998874321 578999999864 444444 3
Q ss_pred CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC
Q 013884 236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE 280 (434)
Q Consensus 236 ~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~ 280 (434)
...+.++.|+|+|++|++++. .++.|++||+.+++.+..+..+
T Consensus 243 ~~~~~~~~~s~dg~~l~~s~~--~d~~v~v~d~~~~~~~~~~~~~ 285 (391)
T 1l0q_A 243 GPDPAGIAVTPDGKKVYVALS--FXNTVSVIDTATNTITATMAVG 285 (391)
T ss_dssp CSSEEEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEECS
T ss_pred CCCccEEEEccCCCEEEEEcC--CCCEEEEEECCCCcEEEEEECC
Confidence 445788999999998866543 3479999999999988877654
No 102
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.91 E-value=6.3e-22 Score=185.65 Aligned_cols=262 Identities=11% Similarity=0.083 Sum_probs=191.0
Q ss_pred cEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCC
Q 013884 37 EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKG 115 (434)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~ 115 (434)
+.+..+..+ ...+.+++| +|+.+|++++ ++.|++|++...........+...|.+++|+|+ +..+++ .+
T Consensus 9 ~~~~~l~~h---~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~-----~~ 78 (313)
T 3odt_A 9 QLSATLKGH---DQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSE-KELLLF-----GG 78 (313)
T ss_dssp EEEEEECCC---SSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETT-TTEEEE-----EE
T ss_pred HHHHHhhCC---CCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCC-CCEEEE-----ec
Confidence 455666554 377889999 8998888884 679999999775444445556678999999998 455543 24
Q ss_pred CCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCC
Q 013884 116 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE 195 (434)
Q Consensus 116 ~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~ 195 (434)
.++.+++|++........+.....+...+..+.| +++.++.. ..|.....| + .+. .......+.
T Consensus 79 ~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~---~~d~~i~~~---------d-~~~-~~~~~~~~~ 142 (313)
T 3odt_A 79 KDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISG---SWDKTAKVW---------K-EGS-LVYNLQAHN 142 (313)
T ss_dssp TTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEE---ETTSEEEEE---------E-TTE-EEEEEECCS
T ss_pred CCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEE---eCCCCEEEE---------c-CCc-EEEecccCC
Confidence 5678999999764434667777778888999999 46665443 233333333 2 121 111122347
Q ss_pred CCeEEEEECc-CCCEEEEEEccCCCeEEEEecccee-EEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE
Q 013884 196 GPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCRP-ILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK 272 (434)
Q Consensus 196 ~~i~~~~wsp-dg~~~av~~g~~~~~i~l~d~~~~~-~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~ 272 (434)
.++.+++|+| +++.++ ++..++.+.+||..... .... +...+.+++|+|+|+ +++++ .+|.|++||+.+++
T Consensus 143 ~~v~~~~~~~~~~~~l~--~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~---~dg~i~i~d~~~~~ 216 (313)
T 3odt_A 143 ASVWDAKVVSFSENKFL--TASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCS---NDGLIKLVDMHTGD 216 (313)
T ss_dssp SCEEEEEEEETTTTEEE--EEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEE---TTSEEEEEETTTCC
T ss_pred CceeEEEEccCCCCEEE--EEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEcc---CCCeEEEEECCchh
Confidence 8999999999 888877 46778999999954322 2222 678899999999999 77777 56799999999999
Q ss_pred EEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee--ecccceeeEEEcCCC
Q 013884 273 QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK--MFDKLFQAEWKPVSP 337 (434)
Q Consensus 273 ~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~--~~~~~~~~~w~p~~~ 337 (434)
.+..+..| .+..++|+|+| .|++++. |+.|+|||+ +++++... +...+..+.|.|++.
T Consensus 217 ~~~~~~~~~~~i~~~~~~~~~-~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~ 279 (313)
T 3odt_A 217 VLRTYEGHESFVYCIKLLPNG-DIVSCGE------DRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD 279 (313)
T ss_dssp EEEEEECCSSCEEEEEECTTS-CEEEEET------TSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC
T ss_pred hhhhhhcCCceEEEEEEecCC-CEEEEec------CCEEEEEECCCCceeEEEeccCceEEEEEEccCCC
Confidence 88888766 56679999999 5888988 999999998 45555443 345799999999986
No 103
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.91 E-value=6.6e-22 Score=194.93 Aligned_cols=313 Identities=11% Similarity=0.053 Sum_probs=212.3
Q ss_pred ceEE---ecCCCcEEEEEecCC---------CCCCC--cEEEEEcCCC--cEEEEEeecCcCCCCCCeeeecCCCcEEEE
Q 013884 3 LLLT---CLRVGLIIQTFQKSS---------TPQEK--NVILWKTETG--EAVYQLFQKNMTKTTWPSIRFSSDEAVACR 66 (434)
Q Consensus 3 ~~l~---fSP~g~~L~t~~~~~---------~~~d~--~v~iWd~~~g--~~~~~~~~~~~~~~~~~~~~~S~d~~~la~ 66 (434)
..++ |+|++..+....... +.+++ .|.+||..++ +.+..+... ....+++|+|++.++++
T Consensus 64 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~----~~~~~~~~s~~~~~~~~ 139 (433)
T 3bws_A 64 VEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTG----FQPKSVRFIDNTRLAIP 139 (433)
T ss_dssp EEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECS----SCBCCCEESSSSEEEEE
T ss_pred EEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCC----CCceEEEEeCCCeEEEE
Confidence 4566 899998887655321 22334 4445555445 455555543 22338899997777777
Q ss_pred ec-CCeEEEEeCCCCCCceee-----eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec
Q 013884 67 MA-TNEIQFFDTTDFPKGILY-----RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF 140 (434)
Q Consensus 67 ~~-~~~i~v~~~~~~~~~~~~-----~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~ 140 (434)
+. ++.|++||.......... ..+...|..++|+|++ ..++. ...++.|++|++.. .+.+.....+
T Consensus 140 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s-----~~~d~~v~~~d~~~---~~~~~~~~~~ 210 (433)
T 3bws_A 140 LLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN-ELWVS-----QMQANAVHVFDLKT---LAYKATVDLT 210 (433)
T ss_dssp BTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT-EEEEE-----EGGGTEEEEEETTT---CCEEEEEECS
T ss_pred eCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC-EEEEE-----ECCCCEEEEEECCC---ceEEEEEcCC
Confidence 75 468999999875432211 1233468889998873 43332 23457899999987 6777777777
Q ss_pred ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEcc----
Q 013884 141 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF---- 216 (434)
Q Consensus 141 ~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~---- 216 (434)
......+.|+|+|+.+++... .|. .++.++.... .....+...+.+..++|+|+|+.+++....
T Consensus 211 ~~~~~~~~~~~~~~~l~~~~~--~~~---------~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 278 (433)
T 3bws_A 211 GKWSKILLYDPIRDLVYCSNW--ISE---------DISVIDRKTK-LEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQ 278 (433)
T ss_dssp SSSEEEEEEETTTTEEEEEET--TTT---------EEEEEETTTT-EEEEECCCCSEEEEEEECTTSSEEEEEEEESCTT
T ss_pred CCCeeEEEEcCCCCEEEEEec--CCC---------cEEEEECCCC-cEEEEecCCCCceEEEEcCCCCEEEEEECCCCcc
Confidence 788899999999998765421 122 2455555443 333344445678999999999988864321
Q ss_pred --CCCeEEEEecccee-EEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCC
Q 013884 217 --MPASATIFNKKCRP-ILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDG 291 (434)
Q Consensus 217 --~~~~i~l~d~~~~~-~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg 291 (434)
.++.|.+||++... +..+ +...+..++|+|+|+++++++. .++.|.+||+.+++.+..+... .+..++|+|||
T Consensus 279 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~--~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg 356 (433)
T 3bws_A 279 ESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDM--CCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDG 356 (433)
T ss_dssp CSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEET--TTTEEEEEETTTTEEEEEEECSSSEEEEEECTTS
T ss_pred ccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEec--CCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCC
Confidence 36799999986443 3333 3457789999999987766643 4479999999999888777654 55669999999
Q ss_pred CEEEEEEcCCce---------eeCCcEEEEee-cCceeeeee-cccceeeEEEcCCCCCCCC
Q 013884 292 RYFMTATTAPRL---------QIDNGIKIFHH-NGSLFFKKM-FDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 292 ~~l~tas~~~rl---------~~D~~i~iw~~-~g~~~~~~~-~~~~~~~~w~p~~~~~~~~ 342 (434)
++|++++..... ..|+.|++||. +++.+.... ...+..+.|.|++..++..
T Consensus 357 ~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 418 (433)
T 3bws_A 357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVIS 418 (433)
T ss_dssp SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEE
T ss_pred CEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEE
Confidence 999998863110 01468999998 455554433 3467899999998877654
No 104
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.91 E-value=5.2e-22 Score=186.84 Aligned_cols=241 Identities=14% Similarity=0.196 Sum_probs=181.3
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|++|+|||+|++|++++ .|+.|+|||+.+++++..+..+. .. ...+++++.+++++. ++.+++|+....
T Consensus 70 V~~v~~~~~~~~l~sgs-----~Dg~v~iw~~~~~~~~~~~~~h~---~~--~~~~~~~~~~l~s~~~~~~~~~~~~~~~ 139 (318)
T 4ggc_A 70 ISSVAWIKEGNYLAVGT-----SSAEVQLWDVQQQKRLRNMTSHS---AR--VGSLSWNSYILSSGSRSGHIHHHDVRVA 139 (318)
T ss_dssp EEEEEECTTSSEEEEEE-----TTSEEEEEETTTTEEEEEEECCS---SC--EEEEEEETTEEEEEETTSEEEEEETTSS
T ss_pred EEEEEECCCCCEEEEEE-----CCCcEEEeecCCceeEEEecCcc---ce--EEEeecCCCEEEEEecCCceEeeecCCC
Confidence 78999999999999999 89999999999999999887653 33 456788889999885 569999998764
Q ss_pred CCc-eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC-CCceeeeeecccceeEEEECCCCCeEEE
Q 013884 81 PKG-ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ-SQPLARRSFFRCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 81 ~~~-~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~-~~~i~~~~~~~~~~~~~~ws~~G~~l~~ 158 (434)
... .....+...+..+.++++ +..++. .+.++.|++|++..... .........+...+..+.|++++..++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~-~~~l~s-----~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 213 (318)
T 4ggc_A 140 EHHVATLSGHSQEVCGLRWAPD-GRHLAS-----GGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA 213 (318)
T ss_dssp SCEEEEEECCSSCEEEEEECTT-SSEEEE-----EETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEE
T ss_pred ceeEEEEcCccCceEEEEEcCC-CCEEEE-----EecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEE
Confidence 432 223345667888999998 444443 34567899999976321 1233444455667888999999998887
Q ss_pred EEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc--C
Q 013884 159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--G 235 (434)
Q Consensus 159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~--~ 235 (434)
+++...+.+.+.|. .... ...........+..+.|+|+++.+++++|..++.|++||++ ++.+..+ |
T Consensus 214 ~~~~~~~~~i~lwd---------~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH 283 (318)
T 4ggc_A 214 TGGGTSDRHIRIWN---------VCSG-ACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH 283 (318)
T ss_dssp EEECTTTCEEEEEE---------TTTC-CEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC
T ss_pred EEecCCCCEEEEEe---------cccc-cccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC
Confidence 76665555544332 2222 22223334678999999999999998888899999999996 5556666 7
Q ss_pred CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013884 236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 271 (434)
Q Consensus 236 ~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~ 271 (434)
.+.|++++|||+|++|++++ .||+|+|||+.+.
T Consensus 284 ~~~V~~l~~spdg~~l~S~s---~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 284 TSRVLSLTMSPDGATVASAA---ADETLRLWRCFEL 316 (318)
T ss_dssp SSCEEEEEECTTSSCEEEEE---TTTEEEEECCSCC
T ss_pred CCCEEEEEEcCCCCEEEEEe---cCCeEEEEECCCC
Confidence 89999999999999999999 6679999998654
No 105
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.91 E-value=2.5e-22 Score=198.69 Aligned_cols=241 Identities=13% Similarity=0.170 Sum_probs=175.5
Q ss_pred cceEEecCC-CcEEEEEecCCCCCCCcEEEEEcCC----------CcEEEEEeecCcCCCCCCeeeecCCCc-EEEEe-c
Q 013884 2 LLLLTCLRV-GLIIQTFQKSSTPQEKNVILWKTET----------GEAVYQLFQKNMTKTTWPSIRFSSDEA-VACRM-A 68 (434)
Q Consensus 2 V~~l~fSP~-g~~L~t~~~~~~~~d~~v~iWd~~~----------g~~~~~~~~~~~~~~~~~~~~~S~d~~-~la~~-~ 68 (434)
|++|+|+|+ +.+|++++ .|+.|+|||+.+ ++.+..+..+. ..+.+++|+|++. +|+++ .
T Consensus 131 v~~l~~~p~~~~~lat~~-----~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 131 VNRARYMPQNACVIATKT-----PSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQ---KEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp CSEEEEETTEEEEEEEEC-----SSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCS---SCCCCEEECTTSTTEEEEECT
T ss_pred EEEEEECCCCCcEEEEEC-----CCCcEEEEECCCcccccCccccCCCcEEecCCC---CCeEEEEeCCCCCCeEEEEeC
Confidence 789999998 78999988 789999999986 55666666543 5666999999998 88887 4
Q ss_pred CCeEEEEeCCCCCCc-------eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc
Q 013884 69 TNEIQFFDTTDFPKG-------ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR 141 (434)
Q Consensus 69 ~~~i~v~~~~~~~~~-------~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~ 141 (434)
++.|++|++...... .....+...|.+++|+|+++..+++ .+.++.|++|++........+.....+.
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 277 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGS-----VADDQKLMIWDTRNNNTSKPSHTVDAHT 277 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEE-----EETTSEEEEEETTCSCSSSCSEEEECCS
T ss_pred CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEE-----EeCCCeEEEEECCCCCCCcceeEeecCC
Confidence 689999999873321 1222345579999999965666654 2456799999998732125666677788
Q ss_pred cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCe
Q 013884 142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPAS 220 (434)
Q Consensus 142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspdg~~~av~~g~~~~~ 220 (434)
..+..+.|+|+|.++++..+ .|.. +..++..........+ .+.+.|.+++|+|+++.+++ ++..++.
T Consensus 278 ~~v~~i~~~p~~~~~l~tg~--~dg~---------v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~-s~~~d~~ 345 (430)
T 2xyi_A 278 AEVNCLSFNPYSEFILATGS--ADKT---------VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA-SSGTDRR 345 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEE--TTSE---------EEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEE-EEETTSC
T ss_pred CCeEEEEeCCCCCCEEEEEe--CCCe---------EEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEE-EEeCCCc
Confidence 89999999999997665543 2332 2333333211222222 35789999999999976444 4677899
Q ss_pred EEEEeccc---------------eeEEEc--CCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccC
Q 013884 221 ATIFNKKC---------------RPILEL--GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVD 270 (434)
Q Consensus 221 i~l~d~~~---------------~~~~~~--~~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~ 270 (434)
|.+||++. ..+..+ |...+++++|+|+++ +|++++ .+|.|.||++.+
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s---~dg~i~iw~~~~ 410 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS---EDNIMQVWQMAE 410 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEE---TTSEEEEEEECH
T ss_pred EEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEE---CCCCEEEeEccc
Confidence 99999865 344444 567899999999999 777777 557999999874
No 106
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.9e-23 Score=204.28 Aligned_cols=266 Identities=12% Similarity=0.090 Sum_probs=180.7
Q ss_pred EecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecC-CCcEEEEec-CCeEEEEeCCC---C
Q 013884 6 TCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSS-DEAVACRMA-TNEIQFFDTTD---F 80 (434)
Q Consensus 6 ~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~-d~~~la~~~-~~~i~v~~~~~---~ 80 (434)
.|+|+|+.+++.. +|+ .+|+.+..+... |...+.+++|+| |+++|++++ |++|+|||+.. .
T Consensus 34 ~f~~~~~~~~~~~-----------~w~-~~g~~~~~~~~~--h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~ 99 (437)
T 3gre_A 34 EFGPIQEIVRSPN-----------MGN-LRGKLIATLMEN--EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG 99 (437)
T ss_dssp GGCCCCCCCCCCC-----------GGG-CCCCEEEEECTT--TTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT
T ss_pred hcCCccccccccc-----------ccc-ccceEEeeeccC--CCCceEEEEECCCCCCEEEEecCCceEEEeECcccccC
Confidence 4788888877533 377 668888888332 347788999999 999999985 67999999865 2
Q ss_pred CCc-eeee-eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec------------ccceeE
Q 013884 81 PKG-ILYR-LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF------------RCSTVQ 146 (434)
Q Consensus 81 ~~~-~~~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~------------~~~~~~ 146 (434)
... .... .+...|.+++|+|+ +..+++ .+.++.|++|++.....+..+.....+ .....+
T Consensus 100 ~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s-----~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 173 (437)
T 3gre_A 100 EVYSSSLTYDCSSTVTQITMIPN-FDAFAV-----SSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVR 173 (437)
T ss_dssp CCCSCSEEEECSSCEEEEEECTT-SSEEEE-----EETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEE
T ss_pred cccceeeeccCCCCEEEEEEeCC-CCEEEE-----EeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceE
Confidence 211 1122 35668999999997 455543 345679999999521003333222211 122333
Q ss_pred EE--ECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC---CCCCeEEEEECcCCCEEEEEEccCCCeE
Q 013884 147 LN--WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR---KEGPVHDVQWSYSGSEFAVVYGFMPASA 221 (434)
Q Consensus 147 ~~--ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~---~~~~i~~~~wspdg~~~av~~g~~~~~i 221 (434)
+. |+++|..|+... .|.. +..+++... .....+. +.+.|.+++|+|+++.|+ +|..++.|
T Consensus 174 ~~~~~~~~~~~l~~~~---~d~~---------i~iwd~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~--s~~~dg~i 238 (437)
T 3gre_A 174 MRAFVNEEKSLLVALT---NLSR---------VIIFDIRTL-ERLQIIENSPRHGAVSSICIDEECCVLI--LGTTRGII 238 (437)
T ss_dssp EEEEECSSCEEEEEEE---TTSE---------EEEEETTTC-CEEEEEECCGGGCCEEEEEECTTSCEEE--EEETTSCE
T ss_pred EEEEEcCCCCEEEEEe---CCCe---------EEEEeCCCC-eeeEEEccCCCCCceEEEEECCCCCEEE--EEcCCCeE
Confidence 33 566777654432 2333 333343332 2222222 468999999999999988 57889999
Q ss_pred EEEeccc-eeEEEc---CCcCeeEEEEC----CCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-------------
Q 013884 222 TIFNKKC-RPILEL---GSGPYNTVRWN----PKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE------------- 280 (434)
Q Consensus 222 ~l~d~~~-~~~~~~---~~~~~~~i~~s----P~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~------------- 280 (434)
++||++. ..+..+ +..++++++|+ |+|++|++++ .+|.|++||+.+++++..+.++
T Consensus 239 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (437)
T 3gre_A 239 DIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGS---SKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIE 315 (437)
T ss_dssp EEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEES---TTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBC
T ss_pred EEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEc---CCCcEEEEEcCCCcEEEEEEcCCCCCccceecccc
Confidence 9999964 444443 56789999554 5688999988 5679999999999888777643
Q ss_pred ---------------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884 281 ---------------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 281 ---------------~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
.+..++|+ ++++|++++. |+.|+|||+..
T Consensus 316 ~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~------d~~i~~wd~~~ 359 (437)
T 3gre_A 316 KGLEELNFCGIRSLNALSTISVS-NDKILLTDEA------TSSIVMFSLNE 359 (437)
T ss_dssp SSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGG------GTEEEEEETTC
T ss_pred cccccceecccccCCceEEEEEC-CceEEEecCC------CCeEEEEECCC
Confidence 24558899 8899999999 99999999843
No 107
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.91 E-value=7e-24 Score=207.39 Aligned_cols=260 Identities=12% Similarity=0.039 Sum_probs=159.9
Q ss_pred eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEe--ecCcCCCCCCeeeecC--------CCcEEEEec-CCeE
Q 013884 4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLF--QKNMTKTTWPSIRFSS--------DEAVACRMA-TNEI 72 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~--~~~~~~~~~~~~~~S~--------d~~~la~~~-~~~i 72 (434)
...++|++.+|++++ .|++|+|||+.++++..... ....|...|.+++|+| |+++||+++ |++|
T Consensus 94 ~~~~~~~~~~las~~-----~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv 168 (393)
T 4gq1_A 94 VNSSPVYSLFLACVC-----QDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTL 168 (393)
T ss_dssp ---CCEEEEEEEEEE-----TTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEE
T ss_pred eeecCCCCCEEEEEe-----CCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeE
Confidence 345678889999999 89999999999987654322 2233557888999998 899999985 5799
Q ss_pred EEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC
Q 013884 73 QFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG 152 (434)
Q Consensus 73 ~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~ 152 (434)
+|||+...........+...+.+++|+|++..+++. .+.++.|++|++.. .+.......+.....
T Consensus 169 ~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~-----~~~d~~v~~wd~~t---~~~~~~~~~~~~~~~------- 233 (393)
T 4gq1_A 169 IIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIV-----GERNGNIRIFDWTL---NLSAEENSQTELVKN------- 233 (393)
T ss_dssp EEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEE-----EETTSEEEEEETTC---CC----------CSC-------
T ss_pred EEEECCCCceeeeecCCCCCcEEEEECCCCCceEEe-----cCCCCEEEEEECCC---CcccccccccCCccc-------
Confidence 999987654333344556679999999985455553 35568999999976 333222111110000
Q ss_pred CCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEEC-cCCCEEEEEEccCCCeEEEEeccceeE
Q 013884 153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWS-YSGSEFAVVYGFMPASATIFNKKCRPI 231 (434)
Q Consensus 153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~ws-pdg~~~av~~g~~~~~i~l~d~~~~~~ 231 (434)
.. ++... ..... .......+...+..+.|+ |||+.++ ++..++.+.+||+.....
T Consensus 234 -~~-~~s~~--~~~~~------------------~~~~~~~~~~~v~~v~~~~~dg~~l~--s~s~d~~i~vwd~~~~~~ 289 (393)
T 4gq1_A 234 -PW-LLTLN--TLPLV------------------NTCHSSGIASSLANVRWIGSDGSGIL--AMCKSGAWLRWNLFANND 289 (393)
T ss_dssp -CC-SEEEE--SGGGC------------------------CCSSSCSEEEEETTTTCEEE--EECTTSEEEEEEC-----
T ss_pred -ce-EEecc--cccce------------------eeeecccccccceeeeeecCCCCEEE--EEeCCCCEEEEECccCCC
Confidence 00 00000 00000 000011225678889887 7999888 678899999999853221
Q ss_pred -EEc--CCc-------------------CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEE
Q 013884 232 -LEL--GSG-------------------PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEW 287 (434)
Q Consensus 232 -~~~--~~~-------------------~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~w 287 (434)
..+ +.. .+..+.+.+.+++++++|. .+|.|+|||+.+++.+.....+ .+..++|
T Consensus 290 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs--~Dg~V~lwd~~~~~~~~~~~~~~~~V~svaf 367 (393)
T 4gq1_A 290 YNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHS--QHGLIQLINTYEKDSNSIPIQLGMPIVDFCW 367 (393)
T ss_dssp --------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEET--TTTEEEEEETTCTTCCEEEEECSSCEEEEEE
T ss_pred CceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEEC--CCCEEEEEECCCCcEEEEecCCCCcEEEEEE
Confidence 111 111 1222333334444444432 5689999999988655544333 5667999
Q ss_pred CCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884 288 SPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 288 spdg~~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
||||++||+++ ++++.||.+.|
T Consensus 368 spdG~~LA~as-------~~Gv~lvrL~g 389 (393)
T 4gq1_A 368 HQDGSHLAIAT-------EGSVLLTRLMG 389 (393)
T ss_dssp CTTSSEEEEEE-------SSEEEEEEEGG
T ss_pred cCCCCEEEEEe-------CCCeEEEEEeC
Confidence 99999999997 67888888765
No 108
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.91 E-value=3.6e-23 Score=204.94 Aligned_cols=268 Identities=9% Similarity=0.064 Sum_probs=183.2
Q ss_pred CCCCeeeecC-CCcEEEEe-cCCeEEEEeCCCCCCceeee--eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEc
Q 013884 50 TTWPSIRFSS-DEAVACRM-ATNEIQFFDTTDFPKGILYR--LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYAC 125 (434)
Q Consensus 50 ~~~~~~~~S~-d~~~la~~-~~~~i~v~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~ 125 (434)
..|.+++|+| ++++||++ .|++|+|||+.......... .|...|.+++|+|.++..++. .+.++.|++|++
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s-----~s~D~~v~iwd~ 194 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYA-----SSMEGTTRLQDF 194 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEE-----ECSSSCEEEEET
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEE-----EeCCCEEEEeec
Confidence 5678999999 56788888 46899999987655433332 356679999999965566653 456789999999
Q ss_pred CCCCCCCceeee--eecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEE
Q 013884 126 GKDLQSQPLARR--SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQW 203 (434)
Q Consensus 126 ~~~~~~~~i~~~--~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~w 203 (434)
.. ....... ......++++.|+++|..|+.. ..|.. ++++++.+.. ......+...|.+++|
T Consensus 195 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g---~~dg~---------i~~wd~~~~~-~~~~~~h~~~v~~v~~ 258 (435)
T 4e54_B 195 KG---NILRVFASSDTINIWFCSLDVSASSRMVVTG---DNVGN---------VILLNMDGKE-LWNLRMHKKKVTHVAL 258 (435)
T ss_dssp TS---CEEEEEECCSSCSCCCCCEEEETTTTEEEEE---CSSSB---------EEEEESSSCB-CCCSBCCSSCEEEEEE
T ss_pred cC---CceeEEeccCCCCccEEEEEECCCCCEEEEE---eCCCc---------EeeeccCcce-eEEEecccceEEeeee
Confidence 65 2221111 1223345789999999986543 23332 3344444431 1111235789999999
Q ss_pred CcCCCEEEEEEccCCCeEEEEecccee-EE-----EcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013884 204 SYSGSEFAVVYGFMPASATIFNKKCRP-IL-----ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT 277 (434)
Q Consensus 204 spdg~~~av~~g~~~~~i~l~d~~~~~-~~-----~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~ 277 (434)
+|++..+++ ++..|+.|++||++... .. ..|...|++++|+|+|++|++++ .+|.|+|||+.+++....+
T Consensus 259 ~p~~~~~~~-s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~---~D~~i~iwd~~~~~~~~~~ 334 (435)
T 4e54_B 259 NPCCDWFLA-TASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD---QKSEIRVYSASQWDCPLGL 334 (435)
T ss_dssp CTTCSSEEE-EEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE---SSSCEEEEESSSSSSEEEE
T ss_pred cCCCceEEE-EecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc---CCCEEEEEECCCCccceEE
Confidence 999986554 57789999999986321 11 22678999999999999999999 5679999999988666555
Q ss_pred eCC--------CceEEEECCCCCEEEEEEcCC-cee-----eCCcEEEEee-cCceeeee---ecccceee-EEEcCCCC
Q 013884 278 RAE--------CSVTSEWSPDGRYFMTATTAP-RLQ-----IDNGIKIFHH-NGSLFFKK---MFDKLFQA-EWKPVSPD 338 (434)
Q Consensus 278 ~~~--------~~~~~~wspdg~~l~tas~~~-rl~-----~D~~i~iw~~-~g~~~~~~---~~~~~~~~-~w~p~~~~ 338 (434)
..+ ....+.|+|++.+++++.... ... -++.|+|||. +|+++... +...+..+ .|+|++..
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~ 414 (435)
T 4e54_B 335 IPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDT 414 (435)
T ss_dssp CCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSC
T ss_pred ecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCE
Confidence 433 233478999999988876421 111 1467999998 56665543 33456665 69999877
Q ss_pred CCCC
Q 013884 339 KFGD 342 (434)
Q Consensus 339 ~~~~ 342 (434)
|...
T Consensus 415 lasg 418 (435)
T 4e54_B 415 LASA 418 (435)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
No 109
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=5.9e-21 Score=181.21 Aligned_cols=284 Identities=11% Similarity=0.091 Sum_probs=185.2
Q ss_pred EEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec--CCeEEEEeCCCCCC
Q 013884 5 LTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA--TNEIQFFDTTDFPK 82 (434)
Q Consensus 5 l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--~~~i~v~~~~~~~~ 82 (434)
..|+++++++..... .++.|.+||+.+++.+..+.... ... .++|+|||++++... ++.|.+||......
T Consensus 3 ~~~~~~~~~~~v~~~----~~~~v~~~d~~~~~~~~~~~~~~---~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~ 74 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQ----HLRRISFFSTDTLEILNQITLGY---DFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP 74 (331)
T ss_dssp ----CCCCEEEEEEG----GGTEEEEEETTTCCEEEEEECCC---CEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC
T ss_pred eeEcCCCCEEEEEec----CCCeEEEEeCcccceeeeEEccC---Ccc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce
Confidence 457887777554431 57899999999999887776432 334 899999999666553 57999999987553
Q ss_pred -ceeeeeecCCeeE-EEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884 83 -GILYRLRVPGVAA-FEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 83 -~~~~~~~~~~v~~-~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
...... ...... ++|+|++ ..+++ ....+....|.+|++.. .+.+..... ......+.|+|+|++|++..
T Consensus 75 ~~~~~~~-~~~~~~~~~~s~dg-~~l~~--~~~~~~~~~i~v~d~~~---~~~~~~~~~-~~~~~~~~~spdg~~l~~~~ 146 (331)
T 3u4y_A 75 KVVAIQE-GQSSMADVDITPDD-QFAVT--VTGLNHPFNMQSYSFLK---NKFISTIPI-PYDAVGIAISPNGNGLILID 146 (331)
T ss_dssp EEEEEEE-CSSCCCCEEECTTS-SEEEE--CCCSSSSCEEEEEETTT---TEEEEEEEC-CTTEEEEEECTTSSCEEEEE
T ss_pred eEEeccc-CCCCccceEECCCC-CEEEE--ecCCCCcccEEEEECCC---CCeEEEEEC-CCCccceEECCCCCEEEEEe
Confidence 222222 234455 8999984 44442 22222334899999977 555554443 34457899999999876543
Q ss_pred EecccccCceeecceeEEEEeeCCCcee--eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ee---EEEc
Q 013884 161 QSDVDKTNQSYYGESKLNYLTTDGTHEG--LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RP---ILEL 234 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~--~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~---~~~~ 234 (434)
.. +.. ...+|.++..+.... ...+........++|+|||+++++ ++..++.+.+||++. .. +..+
T Consensus 147 ~~--~~~------~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v-~~~~~~~v~v~d~~~~~~~~~~~~~ 217 (331)
T 3u4y_A 147 RS--SAN------TVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFV-ANLIGNSIGILETQNPENITLLNAV 217 (331)
T ss_dssp ET--TTT------EEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEE-EETTTTEEEEEECSSTTSCEEEEEE
T ss_pred cC--CCc------eEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEE-EeCCCCeEEEEECCCCcccceeeec
Confidence 21 111 012343332221100 111233456789999999998776 455678999999863 33 4444
Q ss_pred -CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE--EEEeeCC---------CceEEEECCCCCEEEEEEcCCc
Q 013884 235 -GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ--LGTTRAE---------CSVTSEWSPDGRYFMTATTAPR 302 (434)
Q Consensus 235 -~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~--i~~~~~~---------~~~~~~wspdg~~l~tas~~~r 302 (434)
.......++|+|||++|+++..+ ++.|.+||..+++. +..+... ....++|+|||++|++++..
T Consensus 218 ~~~~~~~~~~~spdg~~l~v~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-- 293 (331)
T 3u4y_A 218 GTNNLPGTIVVSRDGSTVYVLTES--TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANI-- 293 (331)
T ss_dssp ECSSCCCCEEECTTSSEEEEECSS--EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETT--
T ss_pred cCCCCCceEEECCCCCEEEEEEcC--CCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCC--
Confidence 34566889999999988877643 36899999999876 4443322 11237999999999888773
Q ss_pred eeeCCcEEEEeecCceee
Q 013884 303 LQIDNGIKIFHHNGSLFF 320 (434)
Q Consensus 303 l~~D~~i~iw~~~g~~~~ 320 (434)
++.|.||++.+..+.
T Consensus 294 ---~~~v~v~d~~~~~~~ 308 (331)
T 3u4y_A 294 ---SRELKVFTISGKVVG 308 (331)
T ss_dssp ---TTEEEEEETTSCEEE
T ss_pred ---CCcEEEEEecCCccc
Confidence 679999999887543
No 110
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.91 E-value=6.3e-23 Score=196.73 Aligned_cols=235 Identities=8% Similarity=0.074 Sum_probs=167.6
Q ss_pred cceEEecCC----CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecC-CCcEEEEec-CCeEEEE
Q 013884 2 LLLLTCLRV----GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSS-DEAVACRMA-TNEIQFF 75 (434)
Q Consensus 2 V~~l~fSP~----g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~-d~~~la~~~-~~~i~v~ 75 (434)
|.+++|||+ |++|++++ .|+.|+|||+.+++.+..+..+. ..+.+++|+| ++.+|+++. ++.|++|
T Consensus 72 v~~~~~~~~~~~~~~~l~~~~-----~dg~i~v~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~l~s~~~dg~i~iw 143 (366)
T 3k26_A 72 FYTCAWTYDSNTSHPLLAVAG-----SRGIIRIINPITMQCIKHYVGHG---NAINELKFHPRDPNLLLSVSKDHALRLW 143 (366)
T ss_dssp EEEEEEEECTTTCCEEEEEEE-----TTCEEEEECTTTCCEEEEEESCC---SCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred EEEEEeccCCCCCCCEEEEec-----CCCEEEEEEchhceEeeeecCCC---CcEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 689999999 77999999 89999999999999998887543 6777999999 899999885 6799999
Q ss_pred eCCCCCCceee---eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee----------------
Q 013884 76 DTTDFPKGILY---RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR---------------- 136 (434)
Q Consensus 76 ~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~---------------- 136 (434)
|+......... ..+...|.++.|+|++ ..+++ .+.++.|++|++.. .+.+..
T Consensus 144 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~-----~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~ 214 (366)
T 3k26_A 144 NIQTDTLVAIFGGVEGHRDEVLSADYDLLG-EKIMS-----CGMDHSLKLWRINS---KRMMNAIKESYDYNPNKTNRPF 214 (366)
T ss_dssp ETTTTEEEEEECSTTSCSSCEEEEEECTTS-SEEEE-----EETTSCEEEEESCS---HHHHHHHHHHHTCCGGGCSSCC
T ss_pred EeecCeEEEEecccccccCceeEEEECCCC-CEEEE-----ecCCCCEEEEECCC---CccccccceeEEecCCCCcccc
Confidence 99875432222 2355679999999984 44443 24467899999976 322221
Q ss_pred ------------eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCC----------c-eeeee-c
Q 013884 137 ------------RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT----------H-EGLVP-L 192 (434)
Q Consensus 137 ------------~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~----------~-~~~v~-l 192 (434)
...+...+.++.|+ |+.++.. ..|...+ +|.+..... . ..... .
T Consensus 215 ~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~---~~d~~i~-------~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (366)
T 3k26_A 215 ISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSK---SCENAIV-------CWKPGKMEDDIDKIKPSESNVTILGRFD 282 (366)
T ss_dssp CCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEE---CSSSEEE-------EEEESSTTCCGGGCCTTCCCEEEEEEEE
T ss_pred cceeeccCccccccCCcceEEEEEEc--CCEEEEE---ecCCEEE-------EEeCCCccccccccccCCcchheecccc
Confidence 22267778889998 6654432 1233333 233221110 0 00111 1
Q ss_pred CCCCCeEEEEECcC--CCEEEEEEccCCCeEEEEeccce-----eEEEc--C--CcCeeEEEECCCCCeEEEEecCCCCC
Q 013884 193 RKEGPVHDVQWSYS--GSEFAVVYGFMPASATIFNKKCR-----PILEL--G--SGPYNTVRWNPKGKFLCLAGFGNLPG 261 (434)
Q Consensus 193 ~~~~~i~~~~wspd--g~~~av~~g~~~~~i~l~d~~~~-----~~~~~--~--~~~~~~i~~sP~g~~l~~~~~~~~~g 261 (434)
.+..+|.+++|+|+ ++.|+ ++..++.|.+||++.. ....+ + ...+++++|+|+|++|++++ .+|
T Consensus 283 ~~~~~v~~~~~s~~~~~~~l~--~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~---~dg 357 (366)
T 3k26_A 283 YSQCDIWYMRFSMDFWQKMLA--LGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVC---DDA 357 (366)
T ss_dssp CSSCCSSCCCCEECTTSSEEE--EECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEE---TTS
T ss_pred ccCCcEEEEEEcCCCCCcEEE--EEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEe---CCC
Confidence 23668899999999 98888 5788999999999643 22233 3 68999999999999999999 667
Q ss_pred eEEEEEccC
Q 013884 262 DMAFWDYVD 270 (434)
Q Consensus 262 ~i~iwd~~~ 270 (434)
.|+|||+.+
T Consensus 358 ~i~iwd~~~ 366 (366)
T 3k26_A 358 SIWRWDRLR 366 (366)
T ss_dssp EEEEEEC--
T ss_pred EEEEEEecC
Confidence 999999853
No 111
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.91 E-value=4e-21 Score=190.52 Aligned_cols=264 Identities=11% Similarity=0.138 Sum_probs=193.8
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~ 80 (434)
|++++|+ +++|++++ .|+.|+|||+.+++.+..+..+. ..+.++.|+ +.+++++ .++.|++||+...
T Consensus 162 v~~~~~~--~~~l~s~~-----~dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~ 229 (445)
T 2ovr_B 162 VWSSQMR--DNIIISGS-----TDRTLKVWNAETGECIHTLYGHT---STVRCMHLH--EKRVVSGSRDATLRVWDIETG 229 (445)
T ss_dssp EEEEEEE--TTEEEEEE-----TTSCEEEEETTTTEEEEEECCCS---SCEEEEEEE--TTEEEEEETTSEEEEEESSSC
T ss_pred EEEEEec--CCEEEEEe-----CCCeEEEEECCcCcEEEEECCCC---CcEEEEEec--CCEEEEEeCCCEEEEEECCCC
Confidence 6788887 67999998 89999999999999988887643 566688884 5667766 5789999999876
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
........+...|..+.+ + +..+++ ++.++.|++|++.+ ...+.....+...+..+.| +|..++...
T Consensus 230 ~~~~~~~~~~~~v~~~~~--~-~~~l~~-----~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~--~~~~l~~~~ 296 (445)
T 2ovr_B 230 QCLHVLMGHVAAVRCVQY--D-GRRVVS-----GAYDFMVKVWDPET---ETCLHTLQGHTNRVYSLQF--DGIHVVSGS 296 (445)
T ss_dssp CEEEEEECCSSCEEEEEE--C-SSCEEE-----EETTSCEEEEEGGG---TEEEEEECCCSSCEEEEEE--CSSEEEEEE
T ss_pred cEEEEEcCCcccEEEEEE--C-CCEEEE-----EcCCCEEEEEECCC---CcEeEEecCCCCceEEEEE--CCCEEEEEe
Confidence 544444556667888888 3 334443 24467899999987 7777777788888889998 677765432
Q ss_pred EecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc-----
Q 013884 161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL----- 234 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~----- 234 (434)
.|...+ .++............+...+.++.++ ++.++ +|..++.|.+||++ +..+..+
T Consensus 297 ---~d~~i~---------i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~--~~~~dg~i~vwd~~~~~~~~~~~~~~~ 360 (445)
T 2ovr_B 297 ---LDTSIR---------VWDVETGNCIHTLTGHQSLTSGMELK--DNILV--SGNADSTVKIWDIKTGQCLQTLQGPNK 360 (445)
T ss_dssp ---TTSCEE---------EEETTTCCEEEEECCCCSCEEEEEEE--TTEEE--EEETTSCEEEEETTTCCEEEEECSTTS
T ss_pred ---CCCeEE---------EEECCCCCEEEEEcCCcccEEEEEEe--CCEEE--EEeCCCeEEEEECCCCcEEEEEccCCC
Confidence 344333 33332221111112346678777774 56666 57789999999995 4445544
Q ss_pred CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee-----CC--CceEEEECCCCCEEEEEEcCCceeeCC
Q 013884 235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-----AE--CSVTSEWSPDGRYFMTATTAPRLQIDN 307 (434)
Q Consensus 235 ~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~-----~~--~~~~~~wspdg~~l~tas~~~rl~~D~ 307 (434)
+...++++.|+ +++|++++ .+|.|++||+.+++.+..+. .+ .+..++|+|+|.+|++++. |+
T Consensus 361 ~~~~v~~~~~~--~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~------dg 429 (445)
T 2ovr_B 361 HQSAVTCLQFN--KNFVITSS---DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSR------NG 429 (445)
T ss_dssp CSSCEEEEEEC--SSEEEEEE---TTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECS------SS
T ss_pred CCCCEEEEEEC--CCEEEEEe---CCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEccc------CC
Confidence 56789999996 68999998 56799999999998887772 22 4556999999999999998 88
Q ss_pred c----EEEEeecCc
Q 013884 308 G----IKIFHHNGS 317 (434)
Q Consensus 308 ~----i~iw~~~g~ 317 (434)
. +.|||+...
T Consensus 430 ~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 430 TEETKLLVLDFDVD 443 (445)
T ss_dssp SSCCEEEEEECCCC
T ss_pred CCccEEEEEECCCC
Confidence 7 999998764
No 112
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.91 E-value=9.5e-23 Score=199.53 Aligned_cols=239 Identities=12% Similarity=0.092 Sum_probs=173.6
Q ss_pred cceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCC-------cEEEEEeecCcCCCCCCeeeecCCC-cEEEEe-cCCe
Q 013884 2 LLLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETG-------EAVYQLFQKNMTKTTWPSIRFSSDE-AVACRM-ATNE 71 (434)
Q Consensus 2 V~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g-------~~~~~~~~~~~~~~~~~~~~~S~d~-~~la~~-~~~~ 71 (434)
|++++||| ++++|++++ .|+.|+|||+.++ +.+..+..+. ..+.+++|+|++ .+|+++ .++.
T Consensus 84 V~~~~~~p~~~~~l~s~s-----~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~p~~~~~l~s~~~dg~ 155 (402)
T 2aq5_A 84 VLDIAWCPHNDNVIASGS-----EDCTVMVWEIPDGGLVLPLREPVITLEGHT---KRVGIVAWHPTAQNVLLSAGCDNV 155 (402)
T ss_dssp EEEEEECTTCTTEEEEEE-----TTSEEEEEECCTTCCSSCBCSCSEEEECCS---SCEEEEEECSSBTTEEEEEETTSC
T ss_pred EEEEEeCCCCCCEEEEEe-----CCCeEEEEEccCCCCccccCCceEEecCCC---CeEEEEEECcCCCCEEEEEcCCCE
Confidence 78999999 999999999 8999999999988 5566666543 677799999998 688877 5689
Q ss_pred EEEEeCCCCCCceee--eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-eecccc-eeEE
Q 013884 72 IQFFDTTDFPKGILY--RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-SFFRCS-TVQL 147 (434)
Q Consensus 72 i~v~~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-~~~~~~-~~~~ 147 (434)
|++||+......... ..+...|.+++|+|++ ..+++ .+.++.|++|++.. ...+... ..+... ...+
T Consensus 156 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~-----~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~ 226 (402)
T 2aq5_A 156 ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDG-ALICT-----SCRDKRVRVIEPRK---GTVVAEKDRPHEGTRPVHA 226 (402)
T ss_dssp EEEEETTTTEEEEEECTTTCCSCEEEEEECTTS-SCEEE-----EETTSEEEEEETTT---TEEEEEEECSSCSSSCCEE
T ss_pred EEEEECCCCCccEEEecCCCCCceEEEEECCCC-CEEEE-----EecCCcEEEEeCCC---CceeeeeccCCCCCcceEE
Confidence 999999875432222 2356679999999984 44443 24567999999987 6666665 455544 6889
Q ss_pred EECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCc--eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEe
Q 013884 148 NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH--EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFN 225 (434)
Q Consensus 148 ~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d 225 (434)
.|+|+|..|++..+...|. .+..++..... .....+.+...+..++|+|+++.+++ +|..++.|.+||
T Consensus 227 ~~~~~~~~l~~g~~~~~d~---------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~g~~dg~i~i~d 296 (402)
T 2aq5_A 227 VFVSEGKILTTGFSRMSER---------QVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYL-CGKGDSSIRYFE 296 (402)
T ss_dssp EECSTTEEEEEEECTTCCE---------EEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEE-EETTCSCEEEEE
T ss_pred EEcCCCcEEEEeccCCCCc---------eEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEE-EEcCCCeEEEEE
Confidence 9999998765532111222 23444433321 22334456778999999999998876 466789999999
Q ss_pred cccee--EEE---c-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE
Q 013884 226 KKCRP--ILE---L-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK 272 (434)
Q Consensus 226 ~~~~~--~~~---~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~ 272 (434)
++... +.. + +..++.+++|+|+|.+++++ ++.+++|++.+++
T Consensus 297 ~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~-----~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 297 ITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNK-----CEIARFYKLHERK 344 (402)
T ss_dssp ECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGG-----TEEEEEEEEETTE
T ss_pred ecCCCcceEeecccccCCcccceEEecccccceec-----ceeEEEEEcCCCc
Confidence 96433 322 2 46889999999999987642 2589999998764
No 113
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.2e-22 Score=191.60 Aligned_cols=266 Identities=8% Similarity=0.008 Sum_probs=179.2
Q ss_pred EecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC----
Q 013884 6 TCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF---- 80 (434)
Q Consensus 6 ~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~---- 80 (434)
.+++++++|+|++ .|+.|+|||+.+++.+..+.. ..+.++.|+|+ ++++ .|++|++|+....
T Consensus 43 ~~~~d~~~l~sg~-----~Dg~v~iwd~~~~~~~~~~~~-----~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~ 109 (343)
T 3lrv_A 43 SMYYDKWVCMCRC-----EDGALHFTQLKDSKTITTITT-----PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITIL 109 (343)
T ss_dssp SSSEEEEEEEEEE-----ETTEEEEEEESSSSCEEEEEE-----ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEE
T ss_pred hhcCCCCEEEEEC-----CCCcEEEEECCCCcEEEEEec-----CCceeeeeCCc---eEEecCCCeEEEEEccCceEEe
Confidence 4567899999999 899999999999998888763 34557889988 5555 5779999987631
Q ss_pred --CCceeeee----ecCCeeEEEEeC--CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee-ecccceeEEEECC
Q 013884 81 --PKGILYRL----RVPGVAAFEVSK--APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS-FFRCSTVQLNWNR 151 (434)
Q Consensus 81 --~~~~~~~~----~~~~v~~~~~sp--~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~-~~~~~~~~~~ws~ 151 (434)
........ +...|..+.|+| + +.+++. .+.++.|++|++.. ...+.... .+...+.++.|+|
T Consensus 110 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s-----~s~dg~i~~wd~~~---~~~~~~~~~~~~~~i~~~~~~p 180 (343)
T 3lrv_A 110 DSKTNKVLREIEVDSANEIIYMYGHNEVN-TEYFIW-----ADNRGTIGFQSYED---DSQYIVHSAKSDVEYSSGVLHK 180 (343)
T ss_dssp ETTTCCEEEEEECCCSSCEEEEECCC----CCEEEE-----EETTCCEEEEESSS---SCEEEEECCCSSCCCCEEEECT
T ss_pred ecCCcceeEEeecCCCCCEEEEEcCCCCC-CCEEEE-----EeCCCcEEEEECCC---CcEEEEEecCCCCceEEEEECC
Confidence 11111111 124699999999 7 444443 34567999999987 55544432 2344678999999
Q ss_pred CCCeEEEEEEecccccCceeecceeEEEEeeCCCcee--eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce
Q 013884 152 GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG--LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR 229 (434)
Q Consensus 152 ~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~--~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~ 229 (434)
+|..|+.. ..|...+ .+++...... .+...+.++|.+++|+|+|..|+. +. ++.|++||++..
T Consensus 181 dg~~lasg---~~dg~i~---------iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s--~~-~~~v~iwd~~~~ 245 (343)
T 3lrv_A 181 DSLLLALY---SPDGILD---------VYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVV--EC-DQTVVCFDLRKD 245 (343)
T ss_dssp TSCEEEEE---CTTSCEE---------EEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEE--EE-SSBEEEEETTSS
T ss_pred CCCEEEEE---cCCCEEE---------EEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEE--Ee-CCeEEEEEcCCC
Confidence 99976543 2343333 3333333222 233335789999999999999985 44 349999999643
Q ss_pred -eEEEc-----CCcCee--EEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECC---CCCEEEEEE
Q 013884 230 -PILEL-----GSGPYN--TVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSP---DGRYFMTAT 298 (434)
Q Consensus 230 -~~~~~-----~~~~~~--~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wsp---dg~~l~tas 298 (434)
.+..+ +...++ +++|+|+|++|++++.+ ++.|.||++++....... ..+..+.|+| +++.|++++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~--d~~i~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~ 321 (343)
T 3lrv_A 246 VGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNE--SNSLTIYKFDKKTKNWTK--DEESALCLQSDTADFTDMDVVC 321 (343)
T ss_dssp TTCBSSCCCBC-----CCEEEEECTTSSEEEEEETT--TTEEEEEEECTTTCSEEE--EEEEECCC----CCCCEEEEEE
T ss_pred CcceeecccccccccccceEEEECCCCCEEEEecCC--CCcEEEEEEcccccceEe--cCceeEecCccccccceeEEEe
Confidence 22222 223444 69999999999998741 469999998655322211 2344578999 999999999
Q ss_pred cCCceeeCCcEEEEeecCce
Q 013884 299 TAPRLQIDNGIKIFHHNGSL 318 (434)
Q Consensus 299 ~~~rl~~D~~i~iw~~~g~~ 318 (434)
. |+.+.++-.++..
T Consensus 322 ~------d~~~~~~~~~~~~ 335 (343)
T 3lrv_A 322 G------DGGIAAILKTNDS 335 (343)
T ss_dssp E------TTEEEEEEECSSE
T ss_pred c------CCceEEEEecCCe
Confidence 9 9999999887764
No 114
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.3e-22 Score=205.28 Aligned_cols=259 Identities=8% Similarity=-0.037 Sum_probs=175.5
Q ss_pred CCCCeeeecCCC---------cEEEEec--------------------CCeEEEEeCCCCCCce----eeeeecCCeeEE
Q 013884 50 TTWPSIRFSSDE---------AVACRMA--------------------TNEIQFFDTTDFPKGI----LYRLRVPGVAAF 96 (434)
Q Consensus 50 ~~~~~~~~S~d~---------~~la~~~--------------------~~~i~v~~~~~~~~~~----~~~~~~~~v~~~ 96 (434)
..+.+++|+|++ ++||++. |++|+||++....... ....+...|..+
T Consensus 134 ~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v 213 (524)
T 2j04_B 134 GLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDL 213 (524)
T ss_dssp C--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEE
T ss_pred CceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEE
Confidence 455588999886 6777642 3589999986643211 122335679999
Q ss_pred EEeCCC-----CCeEEEEecCCCCCCceEEEEEcCCCCC--------CCceeeeeecccceeEEEECCCCCeEEEEEEec
Q 013884 97 EVSKAP-----GSHVAVFVPESKGSPASVQIYACGKDLQ--------SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSD 163 (434)
Q Consensus 97 ~~sp~~-----~~~ia~~~~~~~~~~~~v~i~~~~~~~~--------~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~ 163 (434)
+|+|++ ..+++. .+.++.|+||++..... ..+......+...+.++.|++++ .|+ ++.
T Consensus 214 ~wsp~~~~~~~~~~LAs-----~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~la---sgs 284 (524)
T 2j04_B 214 KWHEGCHAPHLVGCLSF-----VSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVV---CGF 284 (524)
T ss_dssp EECSSCCCSSSSCEEEE-----EETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEE---EEE
T ss_pred EECCCCCCCCCCceEEE-----EecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEE---EEe
Confidence 999972 245653 34567999999976311 11233555677889999999864 332 233
Q ss_pred ccccCceeecceeEEEEeeCCCceeee-ecCCCCCeEEE--EECcCC-CEEEEEEccCCCeEEEEeccce-e--EEEcC-
Q 013884 164 VDKTNQSYYGESKLNYLTTDGTHEGLV-PLRKEGPVHDV--QWSYSG-SEFAVVYGFMPASATIFNKKCR-P--ILELG- 235 (434)
Q Consensus 164 ~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l~~~~~i~~~--~wspdg-~~~av~~g~~~~~i~l~d~~~~-~--~~~~~- 235 (434)
.|.+.+ ||.+ ........ ...+.++|.++ +|+|+| ..|+ +++.|++|+|||++.. . ....+
T Consensus 285 ~DgtV~-------lWD~--~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~la--S~S~D~tvklWD~~~~~~~~~~~~~~ 353 (524)
T 2j04_B 285 KNGFVA-------EFDL--TDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVS--TVAVDGYFYIFNPKDIATTKTTVSRF 353 (524)
T ss_dssp TTSEEE-------EEET--TBCSSCSEEEECSSSCEEEEEEECCTTSCCEEE--EEETTSEEEEECGGGHHHHCEEEEEC
T ss_pred CCCEEE-------EEEC--CCCCCceEEeecccccEEEEEEEcCCCCCeEEE--EeccCCeEEEEECCCCCccccccccc
Confidence 444443 3333 21111111 22357899999 678888 6777 6888999999999642 2 22222
Q ss_pred -CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013884 236 -SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF 312 (434)
Q Consensus 236 -~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw 312 (434)
...+.+++|||+|+.|++++ .+++|++||++++.++..+.+| .+..++|||+|++|++|+. |++|+||
T Consensus 354 ~~~~v~~v~fsp~~~~l~s~~---~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~------Dgtv~lw 424 (524)
T 2j04_B 354 RGSNLVPVVYCPQIYSYIYSD---GASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSA------DGSLIIT 424 (524)
T ss_dssp SCCSCCCEEEETTTTEEEEEC---SSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEET------TTEEECC
T ss_pred ccCcccceEeCCCcCeEEEeC---CCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEEC------CCEEEEE
Confidence 23578999999999999888 4469999999988766666555 5677999999999999999 9999999
Q ss_pred eecCceeeeee-c------ccceeeEEEcCCC
Q 013884 313 HHNGSLFFKKM-F------DKLFQAEWKPVSP 337 (434)
Q Consensus 313 ~~~g~~~~~~~-~------~~~~~~~w~p~~~ 337 (434)
++.++++.... . ..++.+.|+|++.
T Consensus 425 d~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~ 456 (524)
T 2j04_B 425 NAARRLLHGIKNSSATQKSLRLWKWDYSIKDD 456 (524)
T ss_dssp BSCSSTTTCC------CCCCEEEECBCCSSSC
T ss_pred echHhhccccccCccceeeeEEEEeccCCCCC
Confidence 99877554311 1 1467889998875
No 115
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4.8e-23 Score=218.06 Aligned_cols=236 Identities=14% Similarity=0.195 Sum_probs=167.5
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcC--CCcEEEEEeecCcCCCCCCeeeecCC--CcEEEEec-CCeEEEEe
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTE--TGEAVYQLFQKNMTKTTWPSIRFSSD--EAVACRMA-TNEIQFFD 76 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~--~g~~~~~~~~~~~~~~~~~~~~~S~d--~~~la~~~-~~~i~v~~ 76 (434)
|++++|||+|++|++++ .|+.|+|||+. +++.+..+..+ ...+.+++|+++ +++|++++ |+.|++||
T Consensus 12 V~~l~~s~dg~~latg~-----~dg~I~vwd~~~~~~~~~~~l~~h---~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd 83 (753)
T 3jro_A 12 IHDAVLDYYGKRLATCS-----SDKTIKIFEVEGETHKLIDTLTGH---EGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83 (753)
T ss_dssp EEEECCCSSSCCEEEEE-----TTTEEEEEEEETTEEEEEEEECCC---SSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred eEEEEECCCCCeEEEEE-----CCCcEEEEecCCCCCccceeccCC---cCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence 78999999999999999 89999999998 45566666554 367779999998 89998884 67999999
Q ss_pred CCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC--CC
Q 013884 77 TTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG--ST 154 (434)
Q Consensus 77 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~--G~ 154 (434)
+....... +.....+...+.++.|+|+ |.
T Consensus 84 ~~~~~~~~-------------------------------------------------~~~~~~h~~~V~~v~~sp~~~~~ 114 (753)
T 3jro_A 84 EENGRWSQ-------------------------------------------------IAVHAVHSASVNSVQWAPHEYGP 114 (753)
T ss_dssp EETTEEEE-------------------------------------------------EEEECCCSSCEEEEEECCGGGCS
T ss_pred CCCCcccc-------------------------------------------------cccccCCCCCeEEEEECCCCCCC
Confidence 76521000 0001112334557777887 66
Q ss_pred eEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECc-------------CCCEEEEEEccCCCeE
Q 013884 155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY-------------SGSEFAVVYGFMPASA 221 (434)
Q Consensus 155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wsp-------------dg~~~av~~g~~~~~i 221 (434)
.+++.. .|...+ +|.+.............+.+.|.+++|+| ++..|+ +|..++.|
T Consensus 115 ~l~sgs---~dg~I~-------vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~--sgs~dg~I 182 (753)
T 3jro_A 115 LLLVAS---SDGKVS-------VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFV--TGGADNLV 182 (753)
T ss_dssp EEEEEE---TTSEEE-------EEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEE--EEETTSCE
T ss_pred EEEEEe---CCCcEE-------EEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEE--EEECCCeE
Confidence 654432 233222 33332221112222234578999999999 577777 57789999
Q ss_pred EEEeccc-----eeEEEc--CCcCeeEEEECCC---CCeEEEEecCCCCCeEEEEEccCCE-----EEEEeeCC--CceE
Q 013884 222 TIFNKKC-----RPILEL--GSGPYNTVRWNPK---GKFLCLAGFGNLPGDMAFWDYVDGK-----QLGTTRAE--CSVT 284 (434)
Q Consensus 222 ~l~d~~~-----~~~~~~--~~~~~~~i~~sP~---g~~l~~~~~~~~~g~i~iwd~~~~~-----~i~~~~~~--~~~~ 284 (434)
++||++. ..+..+ |..++++++|+|+ |++|++++ .+|.|++||+.+++ .+.....+ .+..
T Consensus 183 ~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s---~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 259 (753)
T 3jro_A 183 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS---QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 259 (753)
T ss_dssp EEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE---SSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCC
T ss_pred EEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe---cCCEEEEecCCCCCCcceeEEeccCCCCCceEE
Confidence 9999863 223333 7889999999999 89999998 56799999998763 22222122 5566
Q ss_pred EEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884 285 SEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 285 ~~wspdg~~l~tas~~~rl~~D~~i~iw~~~ 315 (434)
++|+|||++|++++. |+.|+||++.
T Consensus 260 l~~spdg~~l~s~s~------Dg~I~vwd~~ 284 (753)
T 3jro_A 260 ASWSLSGNVLALSGG------DNKVTLWKEN 284 (753)
T ss_dssp EEECTTTCCEEEECS------SSCEECCBCC
T ss_pred EEEcCCCCEEEEEcC------CCEEEEEecC
Confidence 999999999999999 9999999986
No 116
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.90 E-value=4.8e-22 Score=189.22 Aligned_cols=260 Identities=10% Similarity=0.005 Sum_probs=187.6
Q ss_pred CCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCC---ceeeeeecCCeeEEEEeCCCCC-eEEEEecCCCCCCceEEE
Q 013884 48 TKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPK---GILYRLRVPGVAAFEVSKAPGS-HVAVFVPESKGSPASVQI 122 (434)
Q Consensus 48 ~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~---~~~~~~~~~~v~~~~~sp~~~~-~ia~~~~~~~~~~~~v~i 122 (434)
|...+.+++|+||+++|+++ .++.|+||++..... ......+...|.+++|+|+ +. .+++ ++.++.|++
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~-----~~~dg~i~~ 83 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN-TDLQIYV-----GTVQGEILK 83 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES-SSEEEEE-----EETTSCEEE
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCC-CCcEEEE-----EcCCCeEEE
Confidence 45778899999999999887 568999999877551 1223345668999999998 45 5553 234578999
Q ss_pred EEc-CCCCCCCceeeeee--cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCC------ceeeeecC
Q 013884 123 YAC-GKDLQSQPLARRSF--FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT------HEGLVPLR 193 (434)
Q Consensus 123 ~~~-~~~~~~~~i~~~~~--~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~------~~~~v~l~ 193 (434)
|++ .. . ....... +...+..+.|+| +..++... .|...+ +|.+..... ......+.
T Consensus 84 wd~~~~---~-~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~---~d~~i~-------iwd~~~~~~~~~~~~~~~~~~~~ 148 (342)
T 1yfq_A 84 VDLIGS---P-SFQALTNNEANLGICRICKYG-DDKLIAAS---WDGLIE-------VIDPRNYGDGVIAVKNLNSNNTK 148 (342)
T ss_dssp ECSSSS---S-SEEECBSCCCCSCEEEEEEET-TTEEEEEE---TTSEEE-------EECHHHHTTBCEEEEESCSSSSS
T ss_pred EEeccC---C-ceEeccccCCCCceEEEEeCC-CCEEEEEc---CCCeEE-------EEcccccccccccccCCeeeEEe
Confidence 999 66 3 3355566 888899999999 88765432 333333 222211000 12222344
Q ss_pred CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc---eeE--EE-cCCcCeeEEEECC-CCCeEEEEecCCCCCeEEEE
Q 013884 194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC---RPI--LE-LGSGPYNTVRWNP-KGKFLCLAGFGNLPGDMAFW 266 (434)
Q Consensus 194 ~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~---~~~--~~-~~~~~~~~i~~sP-~g~~l~~~~~~~~~g~i~iw 266 (434)
+.+.|.+++|+|++ ++ ++..++.+.+||++. ... .. .+...+.+++|+| +|++|++++ .+|.|.+|
T Consensus 149 ~~~~v~~~~~~~~~--l~--~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~---~dg~i~i~ 221 (342)
T 1yfq_A 149 VKNKIFTMDTNSSR--LI--VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS---IDGRVAVE 221 (342)
T ss_dssp SCCCEEEEEECSSE--EE--EEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE---TTSEEEEE
T ss_pred eCCceEEEEecCCc--EE--EEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEe---cCCcEEEE
Confidence 67899999999987 44 477789999999976 211 22 2577899999999 999999998 56799999
Q ss_pred EccCC------EEEEEeeCC-----------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee--e-cc
Q 013884 267 DYVDG------KQLGTTRAE-----------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK--M-FD 325 (434)
Q Consensus 267 d~~~~------~~i~~~~~~-----------~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~~--~-~~ 325 (434)
|.+.. +.+..+..+ .+..++|+|+|++|++++. |+.|+|||+. ++++... + ..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~h~~ 295 (342)
T 1yfq_A 222 FFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS------DGIISCWNLQTRKKIKNFAKFNED 295 (342)
T ss_dssp ECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET------TSCEEEEETTTTEEEEECCCCSSS
T ss_pred EEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecC------CceEEEEcCccHhHhhhhhcccCC
Confidence 98765 555566555 5667999999999999999 9999999996 5555543 2 45
Q ss_pred cceeeEEEcCCCCCCCCc
Q 013884 326 KLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 326 ~~~~~~w~p~~~~~~~~~ 343 (434)
.+..+. |++..++...
T Consensus 296 ~v~~~~--~~~~~l~s~s 311 (342)
T 1yfq_A 296 SVVKIA--CSDNILCLAT 311 (342)
T ss_dssp EEEEEE--ECSSEEEEEE
T ss_pred CceEec--CCCCeEEEEe
Confidence 677777 8877776653
No 117
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.90 E-value=9.2e-22 Score=191.04 Aligned_cols=291 Identities=10% Similarity=0.027 Sum_probs=180.7
Q ss_pred eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEEEEeCCCCCC
Q 013884 4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQFFDTTDFPK 82 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~v~~~~~~~~ 82 (434)
..+|||||++|++.+... ...+|.+||+.+++.......+. .....+.|||||+.|++... ..|.+||+.....
T Consensus 40 ~~~~SpDg~~l~~~~~~~--g~~~l~~~d~~~g~~~~lt~~~~---~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~ 114 (388)
T 3pe7_A 40 QKCFTRDGSKLLFGGAFD--GPWNYYLLDLNTQVATQLTEGRG---DNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEE 114 (388)
T ss_dssp SCCBCTTSCEEEEEECTT--SSCEEEEEETTTCEEEECCCSSC---BCSSSCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred CccCCCCCCEEEEEEcCC--CCceEEEEeCCCCceEEeeeCCC---CCccceEEcCCCCEEEEEeCCCeEEEEECCCCcc
Confidence 478999999999988311 12369999999988755443322 23325789999999998864 5999999987553
Q ss_pred ceeeeeecCCeeE--EEEeCCCCCeEEEE-ecCC----------------CCCCceEEEEEcCCCCCCCceeeeeecccc
Q 013884 83 GILYRLRVPGVAA--FEVSKAPGSHVAVF-VPES----------------KGSPASVQIYACGKDLQSQPLARRSFFRCS 143 (434)
Q Consensus 83 ~~~~~~~~~~v~~--~~~sp~~~~~ia~~-~~~~----------------~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~ 143 (434)
......+...+.. +.++|++ ..++.. .... .+....|.+|++.+ ++ ...+......
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~---g~-~~~l~~~~~~ 189 (388)
T 3pe7_A 115 NVVYQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT---GE-STVILQENQW 189 (388)
T ss_dssp EEEEECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT---CC-EEEEEEESSC
T ss_pred eeeeechhhcccccceeECCCC-CeeccccccCcccccccccchhhhhhccCCcceEEEEECCC---Cc-eEEeecCCcc
Confidence 2223333332332 3347774 444332 2111 12346788888876 32 3344444555
Q ss_pred eeEEEECC-CCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCC-CCeEEEEECcCCCEEEEEEccCCC--
Q 013884 144 TVQLNWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE-GPVHDVQWSYSGSEFAVVYGFMPA-- 219 (434)
Q Consensus 144 ~~~~~ws~-~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~-~~i~~~~wspdg~~~av~~g~~~~-- 219 (434)
...+.|+| +|+.|++......+. +...||.++..+.....+.-... ..+..++|||||+.+++++.....
T Consensus 190 ~~~~~~sp~dg~~l~~~~~~~~~~------~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 263 (388)
T 3pe7_A 190 LGHPIYRPYDDSTVAFCHEGPHDL------VDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPD 263 (388)
T ss_dssp EEEEEEETTEEEEEEEEECSCTTT------SSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCC
T ss_pred ccccEECCCCCCEEEEEEecCCCC------CcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCc
Confidence 67899999 999987765321110 12357888776653333322222 257789999999998875543222
Q ss_pred -eEEEEeccceeEE---EcCC-----cCeeEEEECCCCCeEEEEecC------CCCCeEEEEEccCCEEEEEeeCCC---
Q 013884 220 -SATIFNKKCRPIL---ELGS-----GPYNTVRWNPKGKFLCLAGFG------NLPGDMAFWDYVDGKQLGTTRAEC--- 281 (434)
Q Consensus 220 -~i~l~d~~~~~~~---~~~~-----~~~~~i~~sP~g~~l~~~~~~------~~~g~i~iwd~~~~~~i~~~~~~~--- 281 (434)
.|.+||+.+.... .+.. .....+.|||||+.|++...+ ..+..|++||+.+++......+..
T Consensus 264 ~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 343 (388)
T 3pe7_A 264 RFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWK 343 (388)
T ss_dssp EEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCC
T ss_pred ceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCccc
Confidence 3999999754432 2222 012234799999988865321 235689999999887654444333
Q ss_pred ---------ceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884 282 ---------SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 282 ---------~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~ 315 (434)
...++|||||++|+.++.. ++...||.++
T Consensus 344 ~~~~~~~~~~~~~~~spDg~~l~~~s~~-----~g~~~l~~~~ 381 (388)
T 3pe7_A 344 VFEGDRQVTHPHPSFTPDDKQILFTSDV-----HGKPALYLAT 381 (388)
T ss_dssp CBTTBSSTTCCCCEECTTSSEEEEEECT-----TSSCEEEEEE
T ss_pred ccccccccCCCCccCCCCCCEEEEEecC-----CCceeEEEEE
Confidence 4558999999999988864 6667777653
No 118
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.6e-23 Score=207.08 Aligned_cols=246 Identities=10% Similarity=0.011 Sum_probs=176.1
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcC--CCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMT--KTTWPSIRFSSDEAVACRMA-TNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~--~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~ 78 (434)
|.+++|||||++|++.+ .|++|+|||..+ ++..+. +... ...+.+++|||||++||+++ |++|+||++.
T Consensus 88 V~~vawSPdG~~LAs~s-----~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 88 PRVCKPSPIDDWMAVLS-----NNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp EEEEEECSSSSCEEEEE-----TTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred EEEEEECCCCCEEEEEe-----CCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 78999999999999999 899999999654 555554 3210 23577999999999999996 6899999998
Q ss_pred CCCC-------ceee----eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-eecccceeE
Q 013884 79 DFPK-------GILY----RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-SFFRCSTVQ 146 (434)
Q Consensus 79 ~~~~-------~~~~----~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-~~~~~~~~~ 146 (434)
.... .... ..|...|.+++|||++ .++ .+.+..|++|++............ ..+...+..
T Consensus 160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laa------ss~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~s 231 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVA------ALSNNSVFSMTVSASSHQPVSRMIQNASRRKITD 231 (588)
T ss_dssp CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEE------EETTCCEEEECCCSSSSCCCEEEEECCCSSCCCC
T ss_pred CCccccccceeeeeeecccccccccEEEEEEcCCc--EEE------EeCCCeEEEEECCCCccccceeeecccccCcEEE
Confidence 7432 1111 1123579999999985 333 234679999999762101122333 467778899
Q ss_pred EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEE--CcCCCEEEEEEccCCCeEEEE
Q 013884 147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQW--SYSGSEFAVVYGFMPASATIF 224 (434)
Q Consensus 147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~w--spdg~~~av~~g~~~~~i~l~ 224 (434)
++|+ |+.|+.. .++ .+++++..+.........+...|.+++| +||+..++ .++.+++ ++|
T Consensus 232 vaFs--g~~LASa----~~~---------tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La--~a~edG~-klw 293 (588)
T 2j04_A 232 LKIV--DYKVVLT----CPG---------YVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILL--MSNKTSY-KVL 293 (588)
T ss_dssp EEEE--TTEEEEE----CSS---------EEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEE--ECSSCEE-EEE
T ss_pred EEEE--CCEEEEE----eCC---------eEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEE--EEcCCCC-EEE
Confidence 9999 6665543 122 3555555565444555577899999999 99997777 4788888 888
Q ss_pred eccceeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcC
Q 013884 225 NKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTA 300 (434)
Q Consensus 225 d~~~~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~ 300 (434)
..+ .+.|+||+..++.+ ++++++|+..... +..+++. .+..++|||||+.+|+++.-
T Consensus 294 ~~d-------------~~~~spd~~l~a~~-----d~~v~lW~~~g~~-l~~~~~~~~I~~va~SPdG~~lA~~~~i 351 (588)
T 2j04_A 294 LED-------------ELHVTADNIIAPYL-----EKKFKKWSTIWNE-FNNYETTLVIHGISLSPDGYSIAIVYDM 351 (588)
T ss_dssp ESS-------------SEEEECCCSSHHHH-----HHHHHHTTTTTTS-SSSSCCEEEEEEEEECTTSSEEEEEEEE
T ss_pred eec-------------cEEECCCceEEEEc-----CCEEEEEECCCCc-eeeeccceEEEEEEECCCCCEEEEEEec
Confidence 766 36699999988764 3689999876543 2234332 34459999999999999873
No 119
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=5.2e-21 Score=200.86 Aligned_cols=291 Identities=13% Similarity=0.110 Sum_probs=186.3
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCC--
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD-- 79 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~-- 79 (434)
|.+++|||| ++|+... ++.|++||+.+++....... . ..+..++|||||++|++..+++|.+|++..
T Consensus 84 v~~~~~spd-~~~~~~~------~~~i~~~d~~~~~~~~l~~~-~---~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~ 152 (706)
T 2z3z_A 84 SFRTLDAGR-GLVVLFT------QGGLVGFDMLARKVTYLFDT-N---EETASLDFSPVGDRVAYVRNHNLYIARGGKLG 152 (706)
T ss_dssp CEEEEETTT-TEEEEEE------TTEEEEEETTTTEEEEEECC-T---TCCTTCEECTTSSEEEEEETTEEEEEECBCTT
T ss_pred ceeEEECCC-CeEEEEE------CCEEEEEECCCCceEEccCC-c---ccccCCcCCCCCCEEEEEECCeEEEEecCccc
Confidence 678999999 6555544 48999999999876444332 2 445588999999999999889999999876
Q ss_pred ---CCCceeeeeecCC--------------eeEEEEeCCCCCeEEEEe-cC---------------------------CC
Q 013884 80 ---FPKGILYRLRVPG--------------VAAFEVSKAPGSHVAVFV-PE---------------------------SK 114 (434)
Q Consensus 80 ---~~~~~~~~~~~~~--------------v~~~~~sp~~~~~ia~~~-~~---------------------------~~ 114 (434)
............. +..+.|||+ +..|++.. .+ ..
T Consensus 153 ~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpD-g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~ 231 (706)
T 2z3z_A 153 EGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPK-GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTP 231 (706)
T ss_dssp SCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTT-SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSC
T ss_pred ccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCC-CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCC
Confidence 4432211222222 478999999 55555543 11 11
Q ss_pred CCCceEEEEEcCCCCCCCceeee--eecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCC-ceeeee
Q 013884 115 GSPASVQIYACGKDLQSQPLARR--SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-HEGLVP 191 (434)
Q Consensus 115 ~~~~~v~i~~~~~~~~~~~i~~~--~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~-~~~~v~ 191 (434)
.....|.+|++.+ +...... ..+......+.|+|||+.|++.... ... ....++.++..++ ....+.
T Consensus 232 ~~~~~l~~~d~~~---~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~---~~~----~~~~v~~~d~~~g~~~~~~~ 301 (706)
T 2z3z_A 232 SHHVTVGIYHLAT---GKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVN---RAQ----NECKVNAYDAETGRFVRTLF 301 (706)
T ss_dssp CCEEEEEEEETTT---TEEEECCCCSCTTCEEEEEEECTTSSEEEEEEEC---TTS----CEEEEEEEETTTCCEEEEEE
T ss_pred CCeeEEEEEECCC---CceEeeccCCCCceeEeeEEEECCCCEEEEEEeC---CCC----CeeEEEEEECCCCceeeEEE
Confidence 2346789999876 3322211 1233456789999999988775422 111 1224666766554 222221
Q ss_pred c-CCC---CCeEEEEECc--CCCEEEEEEccCCCeEEEEec--cceeEEEc--CCcCeeE-EEECCCCCeEEEEecCCC-
Q 013884 192 L-RKE---GPVHDVQWSY--SGSEFAVVYGFMPASATIFNK--KCRPILEL--GSGPYNT-VRWNPKGKFLCLAGFGNL- 259 (434)
Q Consensus 192 l-~~~---~~i~~~~wsp--dg~~~av~~g~~~~~i~l~d~--~~~~~~~~--~~~~~~~-i~~sP~g~~l~~~~~~~~- 259 (434)
. ... ..+.+++|+| ||+.++ ++..++.+.||+. .+..+..+ +...+.. +.|+|+|+.|++++.++.
T Consensus 302 ~~~~~~~~~~~~~~~~sp~~dg~~l~--~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~ 379 (706)
T 2z3z_A 302 VETDKHYVEPLHPLTFLPGSNNQFIW--QSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASP 379 (706)
T ss_dssp EEECSSCCCCCSCCEECTTCSSEEEE--EECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCT
T ss_pred EccCCCeECccCCceeecCCCCEEEE--EEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCC
Confidence 1 111 2346789999 998655 3555666666654 56656655 3445665 799999998887775432
Q ss_pred -CCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013884 260 -PGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 318 (434)
Q Consensus 260 -~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~ 318 (434)
...|+.||..+++.........+..++|||||++|+++...+. ..+.|++|+..+..
T Consensus 380 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~--~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 380 LERHFYCIDIKGGKTKDLTPESGMHRTQLSPDGSAIIDIFQSPT--VPRKVTVTNIGKGS 437 (706)
T ss_dssp TCBEEEEEETTCCCCEESCCSSSEEEEEECTTSSEEEEEEECSS--CSCEEEEEESSSCE
T ss_pred ceEEEEEEEcCCCCceeccCCCceEEEEECCCCCEEEEEecCCC--CCcEEEEEECCCCe
Confidence 2377888887775333223335667999999999998866321 12569999997654
No 120
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.90 E-value=5.7e-21 Score=190.17 Aligned_cols=255 Identities=11% Similarity=0.108 Sum_probs=183.4
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeec--CCCcEEEEec-CCeEEEEeCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFS--SDEAVACRMA-TNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S--~d~~~la~~~-~~~i~v~~~~ 78 (434)
|++++|+|++ +|++++ .|+.|+|||+.+++++..+..+. ..+.++.|+ +++.++++++ ++.|++||+.
T Consensus 165 V~~l~~~~~~-~l~s~s-----~dg~i~vwd~~~~~~~~~~~~h~---~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~ 235 (464)
T 3v7d_B 165 VWALKYAHGG-ILVSGS-----TDRTVRVWDIKKGCCTHVFEGHN---STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235 (464)
T ss_dssp EEEEEECSTT-EEEEEE-----TTSCEEEEETTTTEEEEEECCCS---SCEEEEEEEESSSCEEEEEEETTSCEEEEECC
T ss_pred EEEEEEcCCC-EEEEEe-----CCCCEEEEECCCCcEEEEECCCC---CccEEEEEecCCCCCEEEEEcCCCcEEEeeCC
Confidence 7899999998 899998 89999999999999988887543 667788888 5888888884 6799999987
Q ss_pred CCCCce-----------------------eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee
Q 013884 79 DFPKGI-----------------------LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA 135 (434)
Q Consensus 79 ~~~~~~-----------------------~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~ 135 (434)
...... ....+...+..+ +++ +..+++ ++.++.|++|++.+ ...+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~-~~~l~~-----~~~d~~i~vwd~~~---~~~~~ 304 (464)
T 3v7d_B 236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGH-GNIVVS-----GSYDNTLIVWDVAQ---MKCLY 304 (464)
T ss_dssp CCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEE-TTEEEE-----EETTSCEEEEETTT---TEEEE
T ss_pred CCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCC-CCEEEE-----EeCCCeEEEEECCC---CcEEE
Confidence 644211 111122234433 444 334432 24567899999987 77888
Q ss_pred eeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcCCCEEEEEE
Q 013884 136 RRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVY 214 (434)
Q Consensus 136 ~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspdg~~~av~~ 214 (434)
....+...+..+.|+|+|+.++... .|...+ .++.... .....+ .+...|.+++|+ ++.++ +
T Consensus 305 ~~~~~~~~v~~~~~~~~~~~l~sg~---~dg~i~---------vwd~~~~-~~~~~~~~h~~~v~~~~~~--~~~l~--s 367 (464)
T 3v7d_B 305 ILSGHTDRIYSTIYDHERKRCISAS---MDTTIR---------IWDLENG-ELMYTLQGHTALVGLLRLS--DKFLV--S 367 (464)
T ss_dssp EECCCSSCEEEEEEETTTTEEEEEE---TTSCEE---------EEETTTT-EEEEEECCCSSCEEEEEEC--SSEEE--E
T ss_pred EecCCCCCEEEEEEcCCCCEEEEEe---CCCcEE---------EEECCCC-cEEEEEeCCCCcEEEEEEc--CCEEE--E
Confidence 8888888999999999999865532 444433 3333332 222222 357899999998 45666 5
Q ss_pred ccCCCeEEEEeccc-eeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE-eeCC--CceEEEECC
Q 013884 215 GFMPASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT-TRAE--CSVTSEWSP 289 (434)
Q Consensus 215 g~~~~~i~l~d~~~-~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~-~~~~--~~~~~~wsp 289 (434)
+..|+.+++||++. .....+ +...+..++|+|+|++|++++ + |.|++||+++++.+.. ...+ .+..++|+
T Consensus 368 ~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-d---g~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~- 442 (464)
T 3v7d_B 368 AAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-E---NQFNIYNLRSGKLVHANILKDADQIWSVNFK- 442 (464)
T ss_dssp EETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-T---TEEEEEETTTCCEEESCTTTTCSEEEEEEEE-
T ss_pred EeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-C---CeEEEEECCCCcEEehhhccCCCcEEEEEec-
Confidence 77899999999964 334444 566778899999999999886 3 6999999999998876 3333 44558886
Q ss_pred CCCEEEEEEc
Q 013884 290 DGRYFMTATT 299 (434)
Q Consensus 290 dg~~l~tas~ 299 (434)
++.+++++.
T Consensus 443 -~~~l~~~~~ 451 (464)
T 3v7d_B 443 -GKTLVAAVE 451 (464)
T ss_dssp -TTEEEEEEE
T ss_pred -CCEEEEEEE
Confidence 666666665
No 121
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=5.9e-21 Score=176.92 Aligned_cols=256 Identities=11% Similarity=0.043 Sum_probs=171.4
Q ss_pred CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCC-CCCceeeeee-cCCeeEEEEeC
Q 013884 23 PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD-FPKGILYRLR-VPGVAAFEVSK 100 (434)
Q Consensus 23 ~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~-~~~~~~~~~~-~~~v~~~~~sp 100 (434)
..|+.|++||+.+++....+.+. ..+.+++|||||++|+++.++.|.+|++.. .........+ ...+..+.|+|
T Consensus 19 ~~~~~i~~~d~~~~~~~~~~~~~----~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVVWQTP----ELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp CCCEEEEEEETTTTEEEEEEEES----SCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred CcceeEEEEeCCCCceeeeccCC----cceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence 46789999999998876444332 566799999999999999999999999987 5432222222 24578899999
Q ss_pred CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEE
Q 013884 101 APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL 180 (434)
Q Consensus 101 ~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l 180 (434)
+ +..+++.... ......|.++++.. .. ....... .....+.|+|+|+.|++....+ +...||.+
T Consensus 95 d-g~~l~~~~~~-~~~~~~l~~~~~~~---~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~---------~~~~l~~~ 158 (297)
T 2ojh_A 95 D-GALYAISDKV-EFGKSAIYLLPSTG---GT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRD---------QVFDIYSM 158 (297)
T ss_dssp T-SSEEEEEECT-TTSSCEEEEEETTC---CC-CEECCSS-SSEEEEEECTTSSEEEEEEEET---------TEEEEEEE
T ss_pred C-CCEEEEEEeC-CCCcceEEEEECCC---Cc-eEEeecC-CCccceEECCCCCEEEEEECCC---------CceEEEEE
Confidence 8 4555443321 11223444444433 22 2333222 2367789999999987654432 22357777
Q ss_pred eeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEec--cceeEEEc--CCcCeeEEEECCCCCeEEEEec
Q 013884 181 TTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK--KCRPILEL--GSGPYNTVRWNPKGKFLCLAGF 256 (434)
Q Consensus 181 ~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~--~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~ 256 (434)
+..+... .........+.+++|+|+|+.+++. +..++.+.+|++ .+..+..+ +...+..+.|+|+|++|++++.
T Consensus 159 ~~~~~~~-~~~~~~~~~~~~~~~s~dg~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 236 (297)
T 2ojh_A 159 DIDSGVE-TRLTHGEGRNDGPDYSPDGRWIYFN-SSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSY 236 (297)
T ss_dssp ETTTCCE-EECCCSSSCEEEEEECTTSSEEEEE-ECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEE
T ss_pred ECCCCcc-eEcccCCCccccceECCCCCEEEEE-ecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEc
Confidence 6655432 2222346789999999999998874 334566777765 45555555 4566788999999999988875
Q ss_pred CC--------CCCeEEEEEccCCEE--EEEeeCC--CceEEEECCCCCEEEEEEcC
Q 013884 257 GN--------LPGDMAFWDYVDGKQ--LGTTRAE--CSVTSEWSPDGRYFMTATTA 300 (434)
Q Consensus 257 ~~--------~~g~i~iwd~~~~~~--i~~~~~~--~~~~~~wspdg~~l~tas~~ 300 (434)
+. ..+.|++||+++++. +..+..+ .+..++|+|||++|++++..
T Consensus 237 ~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 237 DADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp ETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred CCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence 32 125799999988743 4443332 55669999999999999883
No 122
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.90 E-value=2.8e-21 Score=188.09 Aligned_cols=273 Identities=13% Similarity=0.100 Sum_probs=163.2
Q ss_pred cceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC---CcEEEEe-cCCeEEEEe
Q 013884 2 LLLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD---EAVACRM-ATNEIQFFD 76 (434)
Q Consensus 2 V~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d---~~~la~~-~~~~i~v~~ 76 (434)
|.+++|+| ++++|++++ .|+.|+|||+.+++.+..+... ..+.++.|+++ +.+++++ .++.|++||
T Consensus 102 v~~~~~~~~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 172 (408)
T 4a11_B 102 VETVQWYPHDTGMFTSSS-----FDKTLKVWDTNTLQTADVFNFE----ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD 172 (408)
T ss_dssp EEEEEECTTCTTCEEEEE-----TTSEEEEEETTTTEEEEEEECS----SCEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred EEEEEEccCCCcEEEEEe-----CCCeEEEeeCCCCccceeccCC----CceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence 78999999 888999998 8999999999999988877643 44558888884 4478877 567999999
Q ss_pred CCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee---------------eecc
Q 013884 77 TTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR---------------SFFR 141 (434)
Q Consensus 77 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~---------------~~~~ 141 (434)
+...........+...|..++|+|++...+++ .+.++.|++|++... ...+... ..+.
T Consensus 173 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~-----~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (408)
T 4a11_B 173 LKSGSCSHILQGHRQEILAVSWSPRYDYILAT-----ASADSRVKLWDVRRA--SGCLITLDQHNGKKSQAVESANTAHN 245 (408)
T ss_dssp SSSSCCCEEECCCCSCEEEEEECSSCTTEEEE-----EETTSCEEEEETTCS--SCCSEECCTTTTCSCCCTTTSSCSCS
T ss_pred CCCcceeeeecCCCCcEEEEEECCCCCcEEEE-----EcCCCcEEEEECCCC--Ccccccccccccccceeecccccccc
Confidence 98766544555566789999999996555543 245578999999763 1122222 4567
Q ss_pred cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec------CCCCCeEEEEECcCCCEEEEEEc
Q 013884 142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL------RKEGPVHDVQWSYSGSEFAVVYG 215 (434)
Q Consensus 142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l------~~~~~i~~~~wspdg~~~av~~g 215 (434)
..+..+.|+|+|+.|++.. .|... ..+++.......... ........+... .+..+++ +
T Consensus 246 ~~v~~~~~~~~~~~l~~~~---~dg~i---------~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~ 310 (408)
T 4a11_B 246 GKVNGLCFTSDGLHLLTVG---TDNRM---------RLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCG-CSSEFVF--V 310 (408)
T ss_dssp SCEEEEEECTTSSEEEEEE---TTSCE---------EEEETTTCCBCCCCCCCCCCCCSSCCCCEECCS-SSSCEEE--E
T ss_pred CceeEEEEcCCCCEEEEec---CCCeE---------EEEECCCCccceeccccccccccccceeEEecC-CCceEEE--E
Confidence 7889999999999876542 33333 333332221111100 001111222222 3344443 3
Q ss_pred cCCCeEEEEecc-ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCC
Q 013884 216 FMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGR 292 (434)
Q Consensus 216 ~~~~~i~l~d~~-~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~ 292 (434)
..++.+.+||+. +..+..+ |...+++++|+|+|++|++++ .+|.|++||+++++.+........ ...+.|...
T Consensus 311 ~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~---~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~ 386 (408)
T 4a11_B 311 PYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGS---RDCNILAWVPSLYEPVPDDDETTT-KSQLNPAFE 386 (408)
T ss_dssp EETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEE---TTSCEEEEEECC----------------------
T ss_pred ecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEEC---CCCeEEEEeCCCCCccCCCCceEe-ccccccccc
Confidence 457899999985 4455555 678999999999999999999 567999999999887765544322 134444333
Q ss_pred E-EEEEEcCCceeeCCcEEEEeec
Q 013884 293 Y-FMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 293 ~-l~tas~~~rl~~D~~i~iw~~~ 315 (434)
. +.++.. |+.++||+..
T Consensus 387 ~~~~~~~~------~~~~~~W~~~ 404 (408)
T 4a11_B 387 DAWSSSDE------EGGTSAWSHP 404 (408)
T ss_dssp ------------------------
T ss_pred eeecccCc------cCceeecCCc
Confidence 3 334444 8999999853
No 123
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=2.8e-21 Score=203.27 Aligned_cols=287 Identities=10% Similarity=0.037 Sum_probs=182.0
Q ss_pred cceEEecCCCcEEEEEecCCC----CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeC
Q 013884 2 LLLLTCLRVGLIIQTFQKSST----PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDT 77 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~----~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~ 77 (434)
|.+++|||||++|++.+.... ..++.|.|||+.+++. ..+.....+...+..++|||||++||++.+++|++|++
T Consensus 63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~ 141 (723)
T 1xfd_A 63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAH 141 (723)
T ss_dssp CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESS
T ss_pred cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEEC
Confidence 678999999999999874322 2258899999999876 44433322223356899999999999999899999998
Q ss_pred CCCCCceeeeeecCC------------------eeEEEEeCCCCCeEEEEecCC--------------------------
Q 013884 78 TDFPKGILYRLRVPG------------------VAAFEVSKAPGSHVAVFVPES-------------------------- 113 (434)
Q Consensus 78 ~~~~~~~~~~~~~~~------------------v~~~~~sp~~~~~ia~~~~~~-------------------------- 113 (434)
............... +..+.|||+ +..|++...+.
T Consensus 142 ~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpD-g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (723)
T 1xfd_A 142 VGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPD-GTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK 220 (723)
T ss_dssp SSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTT-SSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred CCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCC-CCEEEEEEECCCccceEEeeccCCcCCCcceeccCCC
Confidence 775432222221222 268999999 55555543221
Q ss_pred ---CCCCceEEEEEcCCCCCCCceeeeeec------ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCC
Q 013884 114 ---KGSPASVQIYACGKDLQSQPLARRSFF------RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG 184 (434)
Q Consensus 114 ---~~~~~~v~i~~~~~~~~~~~i~~~~~~------~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~ 184 (434)
......|.+|++.+ +........+ ...+..+.|+|||+.|++..... . ....|+.+++.+
T Consensus 221 ~G~~~~~~~l~~~d~~~---~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~---~-----~~~~i~~~d~~~ 289 (723)
T 1xfd_A 221 AGSENPSISLHVIGLNG---PTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRA---Q-----NVSILTLCDATT 289 (723)
T ss_dssp TTSCCCEEEEEEEESSS---SCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETT---S-----CEEEEEEEETTT
T ss_pred CCCCCCeeEEEEEECCC---CceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCC---C-----CeEEEEEEeCCC
Confidence 01123789999876 4433333322 34567899999999764432211 0 123467777655
Q ss_pred Cceeeee-cCCCCCe----EEEEECcCCCEEEEEEccCCC------eEEEEe-cccee---EEEcC--CcCeeE-EEECC
Q 013884 185 THEGLVP-LRKEGPV----HDVQWSYSGSEFAVVYGFMPA------SATIFN-KKCRP---ILELG--SGPYNT-VRWNP 246 (434)
Q Consensus 185 ~~~~~v~-l~~~~~i----~~~~wspdg~~~av~~g~~~~------~i~l~d-~~~~~---~~~~~--~~~~~~-i~~sP 246 (434)
+....+. ....+.+ ..++|||||+.|+++++..++ .+.+|| ..+.. ...+. ...+.. +.|||
T Consensus 290 g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~sp 369 (723)
T 1xfd_A 290 GVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDE 369 (723)
T ss_dssp CCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEET
T ss_pred CcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcC
Confidence 4322221 1223333 378999999999986455555 677788 44443 44443 333444 69999
Q ss_pred CCCeEEEEecCCCCCeEEEEEccCC--EEEEEee-----CCCceEEEECCCCCEEEEEEcCC
Q 013884 247 KGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTR-----AECSVTSEWSPDGRYFMTATTAP 301 (434)
Q Consensus 247 ~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~-----~~~~~~~~wspdg~~l~tas~~~ 301 (434)
||+.|+..+.+...+.+.||+++.. .....+. ...+..++|||||++|+.....+
T Consensus 370 dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 431 (723)
T 1xfd_A 370 KGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGP 431 (723)
T ss_dssp TTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSS
T ss_pred CCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCC
Confidence 9999987764432368889987532 2222232 22456699999999999877643
No 124
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=1.1e-19 Score=173.59 Aligned_cols=272 Identities=11% Similarity=0.005 Sum_probs=187.2
Q ss_pred cceEEecCCCcEEEEEecCCC--CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeC
Q 013884 2 LLLLTCLRVGLIIQTFQKSST--PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDT 77 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~--~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~ 77 (434)
+..++|||+|++|++.+.... ..++.|.+||+.+++.+..+.... ....+.|+|||++++.. .++.|.+||.
T Consensus 43 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL----KPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp EEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS----CCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC----CcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 457899999999988773211 126789999999999988886642 23488999999966554 3479999999
Q ss_pred CCCCCceeeeeecC---------CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEE
Q 013884 78 TDFPKGILYRLRVP---------GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLN 148 (434)
Q Consensus 78 ~~~~~~~~~~~~~~---------~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ 148 (434)
.+............ .+..+.|+|++. .+.+... +..+.|.+|++.+ .+.+............+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~---~~~~~i~~~d~~~---~~~~~~~~~~~~~~~~~~ 191 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATN-TVYISGI---GKESVIWVVDGGN---IKLKTAIQNTGKMSTGLA 191 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTT-EEEEEEE---SSSCEEEEEETTT---TEEEEEECCCCTTCCCCE
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCC-EEEEEec---CCCceEEEEcCCC---CceEEEecCCCCccceEE
Confidence 87553222222111 167899999854 3332221 2356899999977 566655554455567899
Q ss_pred ECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCce-eeeecC---CCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 013884 149 WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPLR---KEGPVHDVQWSYSGSEFAVVYGFMPASATIF 224 (434)
Q Consensus 149 ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v~l~---~~~~i~~~~wspdg~~~av~~g~~~~~i~l~ 224 (434)
|+|+|+.|++.. .+ ..++.++...... ..+.+. ....+..++|+|+|+.+++. +..++.+.+|
T Consensus 192 ~s~dg~~l~~~~---~~---------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~~~~v~~~ 258 (353)
T 3vgz_A 192 LDSEGKRLYTTN---AD---------GELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFIT-DSKAAEVLVV 258 (353)
T ss_dssp EETTTTEEEEEC---TT---------SEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEE-ESSSSEEEEE
T ss_pred ECCCCCEEEEEc---CC---------CeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEE-eCCCCEEEEE
Confidence 999999876642 11 1245555443321 222331 24457789999999988763 5556899999
Q ss_pred eccc-eeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEc
Q 013884 225 NKKC-RPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 225 d~~~-~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~ 299 (434)
|.+. ..+..+.......+.|+|+|+++++++.+ ++.|.+||..+++.+..+... .+..++|+|||++|+++..
T Consensus 259 d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~ 333 (353)
T 3vgz_A 259 DTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQ--AGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVK 333 (353)
T ss_dssp ETTTCCEEEEEECSSCCCEEEETTTTEEEEEETT--TTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEE
T ss_pred ECCCCcEEEEEEcCCCceEEECCCCCEEEEEECC--CCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEc
Confidence 9964 44444433334679999999988777643 379999999999988877765 4556999999998888776
No 125
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.89 E-value=2.1e-20 Score=190.13 Aligned_cols=290 Identities=12% Similarity=0.074 Sum_probs=192.3
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEc--CCCcEEEEEeecCcCCCCCCeeeecC----CCcEEEEec--CCeEE
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKT--ETGEAVYQLFQKNMTKTTWPSIRFSS----DEAVACRMA--TNEIQ 73 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~--~~g~~~~~~~~~~~~~~~~~~~~~S~----d~~~la~~~--~~~i~ 73 (434)
+.+++|||||++|++.+ .|+.|.+||+ .+++++.++... .....++||| ||++|+.+. +++|.
T Consensus 181 ~~~v~~spdg~~l~v~~-----~d~~V~v~D~~~~t~~~~~~i~~g----~~p~~va~sp~~~~dg~~l~v~~~~~~~v~ 251 (543)
T 1nir_A 181 VHISRMSASGRYLLVIG-----RDARIDMIDLWAKEPTKVAEIKIG----IEARSVESSKFKGYEDRYTIAGAYWPPQFA 251 (543)
T ss_dssp EEEEEECTTSCEEEEEE-----TTSEEEEEETTSSSCEEEEEEECC----SEEEEEEECCSTTCTTTEEEEEEEESSEEE
T ss_pred cceEEECCCCCEEEEEC-----CCCeEEEEECcCCCCcEEEEEecC----CCcceEEeCCCcCCCCCEEEEEEccCCeEE
Confidence 46789999999999998 6799999999 899988887653 3344899999 999998874 68999
Q ss_pred EEeCCCCCCceeeee----------ec-CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee--eeeec
Q 013884 74 FFDTTDFPKGILYRL----------RV-PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA--RRSFF 140 (434)
Q Consensus 74 v~~~~~~~~~~~~~~----------~~-~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~--~~~~~ 140 (434)
|||............ +. ..+..+.+||++...++. . ...+.|.+|++.. ...+. ... .
T Consensus 252 v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs-~----~~~g~i~vvd~~~---~~~l~~~~i~-~ 322 (543)
T 1nir_A 252 IMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN-V----KETGKVLLVNYKD---IDNLTVTSIG-A 322 (543)
T ss_dssp EEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE-E----TTTTEEEEEECTT---SSSCEEEEEE-C
T ss_pred EEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEE-E----CCCCeEEEEEecC---CCcceeEEec-c
Confidence 999887654322222 11 257889999985443332 1 3457899999976 33332 222 2
Q ss_pred ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCc-eeeeecC---CCCCeEEEEECcCCCEEEEEEcc
Q 013884 141 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLR---KEGPVHDVQWSYSGSEFAVVYGF 216 (434)
Q Consensus 141 ~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~---~~~~i~~~~wspdg~~~av~~g~ 216 (434)
......+.|+|+|+++++... .+.+ +..++..... ...+... +.+....+ ++|++..+.+ ++.
T Consensus 323 ~~~~~~~~~spdg~~l~va~~--~~~~---------v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~-s~~ 389 (543)
T 1nir_A 323 APFLHDGGWDSSHRYFMTAAN--NSNK---------VAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWS-TSH 389 (543)
T ss_dssp CSSCCCEEECTTSCEEEEEEG--GGTE---------EEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEE-EEB
T ss_pred CcCccCceECCCCCEEEEEec--CCCe---------EEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEE-ecc
Confidence 334557899999998866432 2222 3344443321 1222221 23323333 4788555554 443
Q ss_pred -CCCeEEEEeccc--------eeEEEc--CCcCeeEEEECCCCCeEEEEecCCC----CCeEEEEEccCCEEE-EEe---
Q 013884 217 -MPASATIFNKKC--------RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNL----PGDMAFWDYVDGKQL-GTT--- 277 (434)
Q Consensus 217 -~~~~i~l~d~~~--------~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~----~g~i~iwd~~~~~~i-~~~--- 277 (434)
.+++|.+||... +.+..+ +.+....+.++|+|++|.++...+. ++.|.+||+++++.. ..+
T Consensus 390 ~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~ 469 (543)
T 1nir_A 390 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIA 469 (543)
T ss_dssp SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHH
T ss_pred CCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeech
Confidence 578999999853 455555 4566788999999999998863221 469999999988655 332
Q ss_pred ------e-CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeee
Q 013884 278 ------R-AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKM 323 (434)
Q Consensus 278 ------~-~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~~ 323 (434)
. ...+..++|+|||++|+++.-.- ..-|+.|.|||. +++++....
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~-~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 470 EWADLGEGAKRVVQPEYNKRGDEVWFSVWNG-KNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp HHHCCCSSCCEEEEEEECSSSSEEEEEEECC-TTSCCEEEEEETTTTEEEEEEC
T ss_pred hhcccCCCCCceEeccCCCCCCEEEEEeecC-CCCCCeEEEEECCCceEEEeec
Confidence 1 23667799999999999874210 001799999998 556655443
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.89 E-value=5.2e-21 Score=194.66 Aligned_cols=302 Identities=13% Similarity=0.108 Sum_probs=206.5
Q ss_pred EecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeC--CCCCC
Q 013884 6 TCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDT--TDFPK 82 (434)
Q Consensus 6 ~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~--~~~~~ 82 (434)
.|||+|.++++.+ .|+.|.+||..+++++.++.... . +..++|||||++|++++ +++|.+||+ ....
T Consensus 144 ~~~p~~~~~vs~~-----~d~~V~v~D~~t~~~~~~i~~g~---~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~- 213 (543)
T 1nir_A 144 DLDLPNLFSVTLR-----DAGQIALVDGDSKKIVKVIDTGY---A-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT- 213 (543)
T ss_dssp CCCGGGEEEEEEG-----GGTEEEEEETTTCCEEEEEECST---T-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-
T ss_pred ccCCCCEEEEEEc-----CCCeEEEEECCCceEEEEEecCc---c-cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-
Confidence 4899999888877 78999999999999999887432 2 44789999999998874 689999999 4433
Q ss_pred ceeeeee-cCCeeEEEEeC----CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec----------cc-ceeE
Q 013884 83 GILYRLR-VPGVAAFEVSK----APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF----------RC-STVQ 146 (434)
Q Consensus 83 ~~~~~~~-~~~v~~~~~sp----~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~----------~~-~~~~ 146 (434)
....+. ...+..++||| ++ .++.+-. ..++.|.+|+..+ .+++...... .. ....
T Consensus 214 -~~~~i~~g~~p~~va~sp~~~~dg-~~l~v~~----~~~~~v~v~D~~t---~~~~~~i~~~g~~~~~~~~~~~~~v~~ 284 (543)
T 1nir_A 214 -KVAEIKIGIEARSVESSKFKGYED-RYTIAGA----YWPPQFAIMDGET---LEPKQIVSTRGMTVDTQTYHPEPRVAA 284 (543)
T ss_dssp -EEEEEECCSEEEEEEECCSTTCTT-TEEEEEE----EESSEEEEEETTT---CCEEEEEECCEECSSSCCEESCCCEEE
T ss_pred -EEEEEecCCCcceEEeCCCcCCCC-CEEEEEE----ccCCeEEEEeccc---cccceeecccCcccCccccccCCceEE
Confidence 223333 34578999999 84 4443321 1356899999877 5666655432 12 4567
Q ss_pred EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCce-eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEe
Q 013884 147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFN 225 (434)
Q Consensus 147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d 225 (434)
+.+++++..+++... . . ..|+.++...... ....+.....+++++|+|||++|++ ++..+++|.+||
T Consensus 285 i~~s~~~~~~~vs~~--~--~-------g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~v-a~~~~~~v~v~D 352 (543)
T 1nir_A 285 IIASHEHPEFIVNVK--E--T-------GKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMT-AANNSNKVAVID 352 (543)
T ss_dssp EEECSSSSEEEEEET--T--T-------TEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEE-EEGGGTEEEEEE
T ss_pred EEECCCCCEEEEEEC--C--C-------CeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEE-EecCCCeEEEEE
Confidence 899999988765421 1 1 1345555433211 1112333556889999999998876 455678999999
Q ss_pred ccce-eEEEcC--C----cCeeEEEECCC-CCeEEEEecCCCCCeEEEEEccC-------CEEEEEeeCC--CceEEEEC
Q 013884 226 KKCR-PILELG--S----GPYNTVRWNPK-GKFLCLAGFGNLPGDMAFWDYVD-------GKQLGTTRAE--CSVTSEWS 288 (434)
Q Consensus 226 ~~~~-~~~~~~--~----~~~~~i~~sP~-g~~l~~~~~~~~~g~i~iwd~~~-------~~~i~~~~~~--~~~~~~ws 288 (434)
.+.. .+..+. . +.... .++|+ |.+++++..+ +++|.+||+.+ ++++.++..+ .+..+.++
T Consensus 353 ~~tg~l~~~i~~g~~ph~g~g~~-~~~p~~g~~~~s~~~~--d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~ 429 (543)
T 1nir_A 353 SKDRRLSALVDVGKTPHPGRGAN-FVHPKYGPVWSTSHLG--DGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTH 429 (543)
T ss_dssp TTTTEEEEEEECSSSBCCTTCEE-EEETTTEEEEEEEBSS--SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECC
T ss_pred CCCCeEEEeeccCCCCCCCCCcc-cCCCCCccEEEeccCC--CceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcC
Confidence 9644 333332 1 11222 25787 5555555433 36999999998 8899998876 44569999
Q ss_pred CCCCEEEEEEc-CCceeeCCcEEEEeec-Cceeeee-----------ecccceeeEEEcCCCCCCC
Q 013884 289 PDGRYFMTATT-APRLQIDNGIKIFHHN-GSLFFKK-----------MFDKLFQAEWKPVSPDKFG 341 (434)
Q Consensus 289 pdg~~l~tas~-~~rl~~D~~i~iw~~~-g~~~~~~-----------~~~~~~~~~w~p~~~~~~~ 341 (434)
|||++|++++. .|....+++|.|||+. ++..++. .-..+.++.|+|++..++.
T Consensus 430 pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~ 495 (543)
T 1nir_A 430 PKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWF 495 (543)
T ss_dssp TTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEE
T ss_pred CCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEE
Confidence 99999999872 3332237899999994 5544332 1346889999999998884
No 127
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.88 E-value=4.2e-21 Score=202.55 Aligned_cols=291 Identities=10% Similarity=0.052 Sum_probs=183.2
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc--EEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD 79 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~ 79 (434)
|.+++|||||++|++.+ . +.|++||+.++. .+..+.... ..+..++|||||++|+++.+++|.+|++..
T Consensus 111 v~~~~~SpDg~~l~~~~-----~-~~i~~~d~~~~~~~~~~~l~~~~---~~~~~~~~SPDG~~la~~~~~~i~~~d~~~ 181 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPL-----G-GELYLYDLKQEGKAAVRQLTHGE---GFATDAKLSPKGGFVSFIRGRNLWVIDLAS 181 (741)
T ss_dssp SCCCEECTTSSEEEEEE-----T-TEEEEEESSSCSTTSCCBCCCSS---SCEEEEEECTTSSEEEEEETTEEEEEETTT
T ss_pred cceeEECCCCCEEEEEe-----C-CcEEEEECCCCCcceEEEcccCC---cccccccCCCCCCEEEEEeCCcEEEEecCC
Confidence 57899999999999988 2 899999999882 233443322 445589999999999999989999999876
Q ss_pred CCCceeeeeecC----------------CeeEEEEeCCCCCeEEEEecCCC--------------------------CC-
Q 013884 80 FPKGILYRLRVP----------------GVAAFEVSKAPGSHVAVFVPESK--------------------------GS- 116 (434)
Q Consensus 80 ~~~~~~~~~~~~----------------~v~~~~~sp~~~~~ia~~~~~~~--------------------------~~- 116 (434)
............ .+..+.|||++ ..|++...+.. ..
T Consensus 182 g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~ 260 (741)
T 2ecf_A 182 GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDAN 260 (741)
T ss_dssp TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCC
T ss_pred CCEEEeccCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCC
Confidence 332111111111 14779999994 54544432211 11
Q ss_pred -CceEEEEEcCC-CCCCCceeeee---ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeee
Q 013884 117 -PASVQIYACGK-DLQSQPLARRS---FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP 191 (434)
Q Consensus 117 -~~~v~i~~~~~-~~~~~~i~~~~---~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~ 191 (434)
...|.+|++.+ . ...... .+......+.| |||+.|++....... ....|+.++..+.....+.
T Consensus 261 ~~~~l~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~-------~~~~i~~~d~~~g~~~~~~ 328 (741)
T 2ecf_A 261 VQVKLGVISPAEQA----QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQ-------KKLDLVEVTLASNQQRVLA 328 (741)
T ss_dssp CEEEEEEECSSTTC----CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTS-------SEEEEEEEETTTCCEEEEE
T ss_pred CeeEEEEEECCCCC----ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccC-------CeEEEEEEECCCCceEEEE
Confidence 12566677654 2 222221 24456678999 999998876532111 2234777776654322222
Q ss_pred cCC-CC---CeEEEEECcCCCEEEEEEccCCCeEEEE--eccceeEEEc--CCcCeeEE-EECCCCCeEEEEecCCCCCe
Q 013884 192 LRK-EG---PVHDVQWSYSGSEFAVVYGFMPASATIF--NKKCRPILEL--GSGPYNTV-RWNPKGKFLCLAGFGNLPGD 262 (434)
Q Consensus 192 l~~-~~---~i~~~~wspdg~~~av~~g~~~~~i~l~--d~~~~~~~~~--~~~~~~~i-~~sP~g~~l~~~~~~~~~g~ 262 (434)
-.. .+ .+.+++|+|||+.++ ++..++.+.|| |..+. ...+ +...+..+ .|||+|+.|++.+.++..+.
T Consensus 329 ~~~~~~~~~~~~~~~~spdg~~~~--~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~ 405 (741)
T 2ecf_A 329 HETSPTWVPLHNSLRFLDDGSILW--SSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARE 405 (741)
T ss_dssp EEECSSCCCCCSCCEECTTSCEEE--EECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTC
T ss_pred EcCCCCcCCcCCceEECCCCeEEE--EecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCce
Confidence 111 12 456899999999444 35556655554 55555 5555 45566676 59999998877665433348
Q ss_pred EEEEEccC-CEEEEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCcee
Q 013884 263 MAFWDYVD-GKQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF 319 (434)
Q Consensus 263 i~iwd~~~-~~~i~~~~~-~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~ 319 (434)
++||++.. +..+..+.. ..+..++|||||++|+.....+.. -..+.+|+..|+.+
T Consensus 406 ~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~--p~~~~l~~~~~~~~ 462 (741)
T 2ecf_A 406 SQIYAVPLQGGQPQRLSKAPGMHSASFARNASVYVDSWSNNST--PPQIELFRANGEKI 462 (741)
T ss_dssp BEEEEEETTCCCCEECCCSCSEEEEEECTTSSEEEEEEEETTE--EEEEEEEETTSCEE
T ss_pred EEEEEEEcCCCCeeecccCCCceEEEECCCCCEEEEEecCCCC--CCeEEEEEcCCCeE
Confidence 89998763 443334433 355569999999999988763211 24688888877643
No 128
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.88 E-value=1.2e-20 Score=177.11 Aligned_cols=227 Identities=15% Similarity=0.220 Sum_probs=164.3
Q ss_pred eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC--CCeEEEEEEeccc
Q 013884 88 LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG--STGLLAVAQSDVD 165 (434)
Q Consensus 88 ~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~--G~~l~~~~~~~~d 165 (434)
.|...|.+++|+|+ +..++. ++.++.|+||++.... ...+..+..|...+..+.|+++ |+.|+. ...|
T Consensus 7 ~h~~~V~~~~~s~~-g~~las-----~s~D~~v~iw~~~~~~-~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s---~s~D 76 (297)
T 2pm7_B 7 AHNEMIHDAVMDYY-GKRMAT-----CSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGTILAS---CSYD 76 (297)
T ss_dssp SCSSCEEEEEECTT-SSEEEE-----EETTSCEEEEEBCSSC-BCCCEEECCCSSCEEEEEECCGGGCSEEEE---EETT
T ss_pred CCcCceEEEEECCC-CCEEEE-----EeCCCEEEEEecCCCC-cEEEEEEccccCCeEEEEecCCCcCCEEEE---EcCC
Confidence 45567999999998 555653 3566899999997521 3567778889999999999864 776433 3355
Q ss_pred ccCceeecceeEEEEeeCCCceeeee-cCCCCCeEEEEECcC--CCEEEEEEccCCCeEEEEeccce-----eEEEcCCc
Q 013884 166 KTNQSYYGESKLNYLTTDGTHEGLVP-LRKEGPVHDVQWSYS--GSEFAVVYGFMPASATIFNKKCR-----PILELGSG 237 (434)
Q Consensus 166 ~~~~~~~g~~~l~~l~~~~~~~~~v~-l~~~~~i~~~~wspd--g~~~av~~g~~~~~i~l~d~~~~-----~~~~~~~~ 237 (434)
.+.+. |.+.. +....... ..+...|.+++|+|+ |..|+ ++..|+.|++||++.. .....|..
T Consensus 77 ~~v~i-------Wd~~~-~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~--s~s~d~~v~~wd~~~~~~~~~~~~~~h~~ 146 (297)
T 2pm7_B 77 GKVMI-------WKEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGPMLL--VASSDGKVSVVEFKENGTTSPIIIDAHAI 146 (297)
T ss_dssp TEEEE-------EEBSS-SCBCCCEEECCCSSCEEEEEECCGGGCSEEE--EEETTSEEEEEEBCSSSCBCCEEEECCSS
T ss_pred CEEEE-------EEcCC-CceEEEEEeecCCCceeEEEeCcCCCCcEEE--EEECCCcEEEEEecCCCceeeeeeecccC
Confidence 55543 33321 11111122 235789999999998 77777 5778999999998642 12334788
Q ss_pred CeeEEEECCC-------------CCeEEEEecCCCCCeEEEEEccCCE----EEEEeeCC--CceEEEECCCC---CEEE
Q 013884 238 PYNTVRWNPK-------------GKFLCLAGFGNLPGDMAFWDYVDGK----QLGTTRAE--CSVTSEWSPDG---RYFM 295 (434)
Q Consensus 238 ~~~~i~~sP~-------------g~~l~~~~~~~~~g~i~iwd~~~~~----~i~~~~~~--~~~~~~wspdg---~~l~ 295 (434)
.++++.|+|+ +++|++++ .+|.|+|||+++++ .+..+.+| .+..++|+|++ .+|+
T Consensus 147 ~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs---~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~la 223 (297)
T 2pm7_B 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGG---ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMA 223 (297)
T ss_dssp CEEEEEECCCC------------CCEEEEEE---TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred ccceEeecCCcccccccCCCCCCcceEEEEc---CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEE
Confidence 9999999997 57999998 56799999998754 56667666 56679999995 8999
Q ss_pred EEEcCCceeeCCcEEEEeecCc------eee--eeecccceeeEEEcCCCCCCCCc
Q 013884 296 TATTAPRLQIDNGIKIFHHNGS------LFF--KKMFDKLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 296 tas~~~rl~~D~~i~iw~~~g~------~~~--~~~~~~~~~~~w~p~~~~~~~~~ 343 (434)
+++. |+.|+||++... .+. ..+...++.+.|+|++..+....
T Consensus 224 s~s~------D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~ 273 (297)
T 2pm7_B 224 SVSQ------DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG 273 (297)
T ss_dssp EEET------TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE
T ss_pred EEEC------CCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEc
Confidence 9999 999999999652 111 12345789999999998877653
No 129
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=2.3e-19 Score=170.42 Aligned_cols=294 Identities=10% Similarity=0.032 Sum_probs=181.7
Q ss_pred CCcEEEEEecCCCCCCCcEEEEEcC-CCc--EEEEEeecCcCCCCCCeeeecCCCcEEEEecC--CeEEEEeCC--CCCC
Q 013884 10 VGLIIQTFQKSSTPQEKNVILWKTE-TGE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT--NEIQFFDTT--DFPK 82 (434)
Q Consensus 10 ~g~~L~t~~~~~~~~d~~v~iWd~~-~g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~--~~i~v~~~~--~~~~ 82 (434)
.+++|++... .|+.|++||+. +++ .+..+... ..+.+++|+||+++|+.+.. +.|.+|++. ....
T Consensus 3 ~~~~l~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~ 74 (343)
T 1ri6_A 3 LKQTVYIASP----ESQQIHVWNLNHEGALTLTQVVDVP----GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL 74 (343)
T ss_dssp CEEEEEEEEG----GGTEEEEEEECTTSCEEEEEEEECS----SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred ceEEEEEeCC----CCCeEEEEEECCCCcEEEeeeEecC----CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce
Confidence 3455555431 57999999995 453 33343322 45568999999998877743 799999987 3222
Q ss_pred ceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013884 83 GILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ 161 (434)
Q Consensus 83 ~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~ 161 (434)
.....+. ...+..++|+|++ ..+.+.. ...+.|.+|++........+.... .......+.|+|+|+.|++...
T Consensus 75 ~~~~~~~~~~~~~~~~~s~dg-~~l~~~~----~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~ 148 (343)
T 1ri6_A 75 TFAAESALPGSLTHISTDHQG-QFVFVGS----YNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPAL 148 (343)
T ss_dssp EEEEEEECSSCCSEEEECTTS-SEEEEEE----TTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEG
T ss_pred eeccccccCCCCcEEEEcCCC-CEEEEEe----cCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecC
Confidence 1222222 2367889999984 4443322 224689999994210022222222 2234667899999998765421
Q ss_pred ecccccCceeecceeEEEEeeCC--Ccee----eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc--ee---
Q 013884 162 SDVDKTNQSYYGESKLNYLTTDG--THEG----LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RP--- 230 (434)
Q Consensus 162 ~~~d~~~~~~~g~~~l~~l~~~~--~~~~----~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~--~~--- 230 (434)
.+ + .++.+++.. .... .........+..++|+|+|+.+++. +..++.+.+||++. ..
T Consensus 149 --~~-------~--~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~-~~~~~~i~~~~~~~~~g~~~~ 216 (343)
T 1ri6_A 149 --KQ-------D--RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCV-NELNSSVDVWELKDPHGNIEC 216 (343)
T ss_dssp --GG-------T--EEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEE-ETTTTEEEEEESSCTTSCCEE
T ss_pred --CC-------C--EEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEE-eCCCCEEEEEEecCCCCcEEE
Confidence 11 1 234444332 2111 2233334578899999999988764 55678999999842 11
Q ss_pred EEE---cC-----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc--C--CEEEEEeeCC-CceEEEECCCCCEEEEE
Q 013884 231 ILE---LG-----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV--D--GKQLGTTRAE-CSVTSEWSPDGRYFMTA 297 (434)
Q Consensus 231 ~~~---~~-----~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~--~--~~~i~~~~~~-~~~~~~wspdg~~l~ta 297 (434)
... +. ......++|+|+|++|++++.+ ++.|.+||+. + .+.+..+..+ .+..++|+|||++|+++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 294 (343)
T 1ri6_A 217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT--ASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAA 294 (343)
T ss_dssp EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT--TTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEE
T ss_pred EeeccccCccccccCCccceEECCCCCEEEEEecC--CCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEe
Confidence 111 11 1244579999999988876643 4799999998 2 3555555433 45669999999999998
Q ss_pred EcCCceeeCCcEEEEeec---Cce--eeeeec-ccceeeEEEcCC
Q 013884 298 TTAPRLQIDNGIKIFHHN---GSL--FFKKMF-DKLFQAEWKPVS 336 (434)
Q Consensus 298 s~~~rl~~D~~i~iw~~~---g~~--~~~~~~-~~~~~~~w~p~~ 336 (434)
... |+.+.||+++ |++ +..... ..-..+.|.|+.
T Consensus 295 ~~~-----~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~~ 334 (343)
T 1ri6_A 295 GQK-----SHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAHE 334 (343)
T ss_dssp CTT-----TCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEEEEC
T ss_pred cCC-----CCeEEEEEEcCCCceeeEccccccCCCCeeEEEEccc
Confidence 853 8999999775 433 222222 345566666654
No 130
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.88 E-value=2.8e-20 Score=174.60 Aligned_cols=258 Identities=15% Similarity=0.128 Sum_probs=157.7
Q ss_pred CCcEEEEEcCCC---cEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cC---CeEEEEeCCCC----CCceeeeeecCC
Q 013884 25 EKNVILWKTETG---EAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--AT---NEIQFFDTTDF----PKGILYRLRVPG 92 (434)
Q Consensus 25 d~~v~iWd~~~g---~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~---~~i~v~~~~~~----~~~~~~~~~~~~ 92 (434)
+..|++|+..++ ++++++..+. ..|..+.|+||..-|++. ++ +.|+..-.... ........+...
T Consensus 62 ~~~v~lw~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~ 138 (356)
T 2w18_A 62 EDVVSLWKALDAWQWEKLYTWHFAE---VPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKA 138 (356)
T ss_dssp SSEEEEEEESSSSBEEEEEEEECCS---SCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEE
T ss_pred cceEEEcccCCCccceeeEEEeccC---ceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEE
Confidence 578999999999 8899987764 456688899976533332 32 12222221111 110111111111
Q ss_pred eeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECC---CCCeEEEEEEecccccCc
Q 013884 93 VAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR---GSTGLLAVAQSDVDKTNQ 169 (434)
Q Consensus 93 v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~---~G~~l~~~~~~~~d~~~~ 169 (434)
|.+ + ++ +..+... ..+.++.|++|++... ++.+.....|...+..+.|++ +|..| +++..|++.+
T Consensus 139 v~~--l-~~-g~lv~ss---~~g~d~~V~~~~~s~d--G~~~~s~~~~~~~v~~l~fs~~~g~~~~L---aSgS~D~TIk 206 (356)
T 2w18_A 139 VLG--L-TK-RRLVSSS---GTLSDQQVEVMTFAED--GGGKENQFLMPPEETILTFAEVQGMQEAL---LGTTIMNNIV 206 (356)
T ss_dssp EEE--E-TT-TEEEEEE---SSSTTCEEEEEEECTT--SCEEEEEEECCCSSCEEEEEEEETSTTEE---EEEETTSEEE
T ss_pred EEe--c-CC-CcEEEec---ccCCCCcEEEEEECCC--CceeeeeccCCCceeeEEeeccCCCCceE---EEecCCCcEE
Confidence 211 2 22 2333221 1346789999999332 677788888888888899998 55653 3344777777
Q ss_pred eeeccee--EEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEE----------EEccCCCeEEEEecccee-EEEc--
Q 013884 170 SYYGESK--LNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAV----------VYGFMPASATIFNKKCRP-ILEL-- 234 (434)
Q Consensus 170 ~~~g~~~--l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av----------~~g~~~~~i~l~d~~~~~-~~~~-- 234 (434)
.|.-.+. ++.+. +.+ .....+..++|+|+|..+++ ++|..|+++++||.+... +..+
T Consensus 207 IWDl~TGk~l~tL~--g~~------~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~ 278 (356)
T 2w18_A 207 IWNLKTGQLLKKMH--IDD------SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLY 278 (356)
T ss_dssp EEETTTCCEEEEEE--CCC---------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEE
T ss_pred EEECCCCcEEEEEc--CCC------cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEe
Confidence 5543221 12221 100 01236778899999988753 467888999999986443 2221
Q ss_pred --CCcC-eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--Cce-EEEECCCCCEEEEEEcCCceeeCCc
Q 013884 235 --GSGP-YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSV-TSEWSPDGRYFMTATTAPRLQIDNG 308 (434)
Q Consensus 235 --~~~~-~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~-~~~wspdg~~l~tas~~~rl~~D~~ 308 (434)
..+. ...+..+.+|.++++++ .+|+|+|||+.+++++.++.+| .+. .++|||||++|++|+. |++
T Consensus 279 ~~p~Gh~~~~lsg~~sg~~lASgS---~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~------D~T 349 (356)
T 2w18_A 279 CLPPGQAGRFLEGDVKDHCAAAIL---TSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQK------DGN 349 (356)
T ss_dssp CCCTTCCCCEEEEEEETTEEEEEE---TTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECT------TSC
T ss_pred eccCCCcceeEccccCCCEEEEEc---CCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEEC------CCc
Confidence 1111 11222222366788887 5579999999999999999866 344 4899999999999999 999
Q ss_pred EEEEee
Q 013884 309 IKIFHH 314 (434)
Q Consensus 309 i~iw~~ 314 (434)
|||||+
T Consensus 350 IklWd~ 355 (356)
T 2w18_A 350 IFVYHY 355 (356)
T ss_dssp EEEEEE
T ss_pred EEEecC
Confidence 999996
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.87 E-value=9.2e-20 Score=179.44 Aligned_cols=260 Identities=11% Similarity=0.041 Sum_probs=176.0
Q ss_pred CCcEEEEEecCCC-CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeCCCCCCce
Q 013884 10 VGLIIQTFQKSST-PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDTTDFPKGI 84 (434)
Q Consensus 10 ~g~~L~t~~~~~~-~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~~~~~~~~ 84 (434)
.+..|++.+...+ ...+.|++||+..+ .++.+..+. ..+.+++|||||++|+++.. ..|++||+..... .
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~~l~~~~---~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~-~ 216 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDGY-NQFVVHRSP---QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-R 216 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTSC-SCEEEEEES---SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-E
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCCC-CCEEEeCCC---CcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE-E
Confidence 3677777663211 11279999998754 455555443 55668999999999998853 3999999987543 2
Q ss_pred eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecc
Q 013884 85 LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDV 164 (434)
Q Consensus 85 ~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~ 164 (434)
....+...+..++|||+ +..+++.... .....|.+|++.+ ++ ......+......+.|+|||+.|++....
T Consensus 217 ~l~~~~~~~~~~~~spd-g~~la~~~~~--~g~~~i~~~d~~~---~~-~~~l~~~~~~~~~~~~spdg~~l~~~s~~-- 287 (415)
T 2hqs_A 217 QVASFPRHNGAPAFSPD-GSKLAFALSK--TGSLNLYVMDLAS---GQ-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ-- 287 (415)
T ss_dssp EEECCSSCEEEEEECTT-SSEEEEEECT--TSSCEEEEEETTT---CC-EEECCCCSSCEEEEEECTTSSEEEEEECT--
T ss_pred EeecCCCcccCEEEcCC-CCEEEEEEec--CCCceEEEEECCC---CC-EEeCcCCCCcccceEECCCCCEEEEEECC--
Confidence 22223446889999999 5555533221 2235789999876 33 34555666778899999999998775321
Q ss_pred cccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEeccceeEEEc-CCcCeeEE
Q 013884 165 DKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCRPILEL-GSGPYNTV 242 (434)
Q Consensus 165 d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~-~~~i~l~d~~~~~~~~~-~~~~~~~i 242 (434)
+ +...||.++..+.....+. .....+.+++|||||+.+++..... ...|.+||++......+ ....+.++
T Consensus 288 ~-------g~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~ 359 (415)
T 2hqs_A 288 A-------GRPQVYKVNINGGAPQRIT-WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETP 359 (415)
T ss_dssp T-------SSCEEEEEETTSSCCEECC-CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEE
T ss_pred C-------CCcEEEEEECCCCCEEEEe-cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCCCcCCe
Confidence 1 2235788877665333222 2356788999999999998754321 24899999986655555 23478899
Q ss_pred EECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCC
Q 013884 243 RWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGR 292 (434)
Q Consensus 243 ~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~ 292 (434)
+|+|||++|++++.++..+.|++||+..+. +..+..+ .+..++|||--.
T Consensus 360 ~~spdg~~l~~~s~~~~~~~l~~~d~~g~~-~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 360 SLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EECTTSSEEEEEEEETTEEEEEEEETTSCC-EEECCCSSSEEEEEEECCCCC
T ss_pred EEcCCCCEEEEEEcCCCccEEEEEECCCCc-EEEeeCCCCCCcCCccccccc
Confidence 999999999988854423389999997554 4444444 566799999754
No 132
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=8.4e-20 Score=191.64 Aligned_cols=314 Identities=11% Similarity=0.071 Sum_probs=189.3
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEE-EEEeecCcC--------------CCCCCeeeecCCCcEEEE
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAV-YQLFQKNMT--------------KTTWPSIRFSSDEAVACR 66 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~-~~~~~~~~~--------------~~~~~~~~~S~d~~~la~ 66 (434)
+..+.|+ |..+++.+ .|+ | +||+.+|+.+ ..+...... ...+.+++|||| ++++.
T Consensus 28 ~~~~~w~--g~~~~~~~-----~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~ 97 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIE-----GDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVL 97 (706)
T ss_dssp CTTCEEE--TTEEEEEE-----TTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEE
T ss_pred CCCCcCc--CCeEEEEe-----CCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEE
Confidence 3457788 66666665 455 8 9999999873 333332100 034668999999 77777
Q ss_pred ecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-CCCceeeeeecccc--
Q 013884 67 MATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL-QSQPLARRSFFRCS-- 143 (434)
Q Consensus 67 ~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-~~~~i~~~~~~~~~-- 143 (434)
..+++|++||+..... .....+...+..++|||+ +..+++. . .+.|.+|++.... ..............
T Consensus 98 ~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~Spd-G~~la~~-~-----~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~ 169 (706)
T 2z3z_A 98 FTQGGLVGFDMLARKV-TYLFDTNEETASLDFSPV-GDRVAYV-R-----NHNLYIARGGKLGEGMSRAIAVTIDGTETL 169 (706)
T ss_dssp EETTEEEEEETTTTEE-EEEECCTTCCTTCEECTT-SSEEEEE-E-----TTEEEEEECBCTTSCCCCCEESCSCCBTTE
T ss_pred EECCEEEEEECCCCce-EEccCCcccccCCcCCCC-CCEEEEE-E-----CCeEEEEecCcccccCCCcEEeccCCCCCe
Confidence 7889999999976432 112222346788999999 5556553 2 2689999986500 00111221211111
Q ss_pred -------------eeEEEECCCCCeEEEEEEecccccCce---------------------eecceeEEEEeeCCCceee
Q 013884 144 -------------TVQLNWNRGSTGLLAVAQSDVDKTNQS---------------------YYGESKLNYLTTDGTHEGL 189 (434)
Q Consensus 144 -------------~~~~~ws~~G~~l~~~~~~~~d~~~~~---------------------~~g~~~l~~l~~~~~~~~~ 189 (434)
...+.|+|||+.|++....+....... -.+...|+.+++.+.....
T Consensus 170 ~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~ 249 (706)
T 2z3z_A 170 VYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVY 249 (706)
T ss_dssp EESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEE
T ss_pred EcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEe
Confidence 368999999999887642111000000 0133567888877664333
Q ss_pred eec--CCCCCeEEEEECcCCCEEEEEEccCC---CeEEEEeccce-eEEEc----CCc---CeeEEEECC--CCCeEEEE
Q 013884 190 VPL--RKEGPVHDVQWSYSGSEFAVVYGFMP---ASATIFNKKCR-PILEL----GSG---PYNTVRWNP--KGKFLCLA 254 (434)
Q Consensus 190 v~l--~~~~~i~~~~wspdg~~~av~~g~~~---~~i~l~d~~~~-~~~~~----~~~---~~~~i~~sP--~g~~l~~~ 254 (434)
+.. .+...+.+++|+|||+.+++...... ..+.+||+... ....+ +.. .++.+.||| ||++|+++
T Consensus 250 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~ 329 (706)
T 2z3z_A 250 LQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQS 329 (706)
T ss_dssp CCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEE
T ss_pred eccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEE
Confidence 332 23467899999999999987443221 28999998654 33322 121 246789999 99988877
Q ss_pred ecCCCCCeEEEEEcc-CCEEEEEeeCC--CceE-EEECCCCCEEEEEEcCCceeeCC----cEEEEeecCceeeee-ecc
Q 013884 255 GFGNLPGDMAFWDYV-DGKQLGTTRAE--CSVT-SEWSPDGRYFMTATTAPRLQIDN----GIKIFHHNGSLFFKK-MFD 325 (434)
Q Consensus 255 ~~~~~~g~i~iwd~~-~~~~i~~~~~~--~~~~-~~wspdg~~l~tas~~~rl~~D~----~i~iw~~~g~~~~~~-~~~ 325 (434)
. .+|.+.||+++ +++.+..+..+ .+.. ++|||||+.|++++.. ++ .|.+|+..+..+... +..
T Consensus 330 ~---~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~-----~~~~~~~l~~~d~~~~~~~~l~~~~ 401 (706)
T 2z3z_A 330 R---RDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE-----ASPLERHFYCIDIKGGKTKDLTPES 401 (706)
T ss_dssp C---TTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS-----SCTTCBEEEEEETTCCCCEESCCSS
T ss_pred c---cCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC-----CCCceEEEEEEEcCCCCceeccCCC
Confidence 6 34678888765 55555555544 3444 7999999999888773 33 455555544333222 334
Q ss_pred cceeeEEEcCCCCCCC
Q 013884 326 KLFQAEWKPVSPDKFG 341 (434)
Q Consensus 326 ~~~~~~w~p~~~~~~~ 341 (434)
.+..+.|+|++..++.
T Consensus 402 ~~~~~~~spdg~~l~~ 417 (706)
T 2z3z_A 402 GMHRTQLSPDGSAIID 417 (706)
T ss_dssp SEEEEEECTTSSEEEE
T ss_pred ceEEEEECCCCCEEEE
Confidence 5788999999876653
No 133
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.87 E-value=2.2e-20 Score=191.87 Aligned_cols=271 Identities=12% Similarity=0.030 Sum_probs=175.8
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDT 77 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~ 77 (434)
|++++|||||++|++.+. .|++++||++.+|+. ..+.... ...+..+.|||| ++++++.. ...++|.+
T Consensus 24 ~~~~~~~~DG~~la~~s~----~~g~~~lw~~~~g~~-~~lt~~~--~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 24 KYSLQGVVDGDKLLVVGF----SEGSVNAYLYDGGET-VKLNREP--INSVLDPHYGVG-RVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp EEEEEEEETTTEEEEEEE----ETTEEEEEEEETTEE-EECCSSC--CSEECEECTTCS-EEEEEEECSTTSCCEEEEEE
T ss_pred hheeecCCCCCeEEEEEc----cCCceeEEEEcCCCc-Eeeeccc--ccccccccCCCC-eEEEEeccCCCCcceEEEEE
Confidence 688999999999999872 278999999976655 4443322 134558999999 77765542 45566654
Q ss_pred CC--CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013884 78 TD--FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG 155 (434)
Q Consensus 78 ~~--~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~ 155 (434)
.. ..... ......++...+|||+++..+.+ ... .+.+.||++.+ +.. .++..+.. ..+.|+|||+.
T Consensus 96 ~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~-s~~----~~~~~l~d~~~---g~~-~~l~~~~~--~~~~~spDG~~ 163 (582)
T 3o4h_A 96 NTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFT-GAT----EDRVALYALDG---GGL-RELARLPG--FGFVSDIRGDL 163 (582)
T ss_dssp ETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEE-EEC----SSCEEEEEEET---TEE-EEEEEESS--CEEEEEEETTE
T ss_pred eccCCCccc-cccCCCCceeeeeCCCCCeEEEE-ecC----CCCceEEEccC---CcE-EEeecCCC--ceEEECCCCCE
Confidence 33 22211 11223456677999986543322 211 12345999866 332 22222222 78999999999
Q ss_pred EEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC--eEEEEeccceeEEE
Q 013884 156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--SATIFNKKCRPILE 233 (434)
Q Consensus 156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~--~i~l~d~~~~~~~~ 233 (434)
|+...... . +...||.+++.++....+ ..+.+.+.+++|||||+.++ ++..++ .|.+||+++.....
T Consensus 164 la~~~~~~---~-----~~~~i~~~d~~~g~~~~l-~~~~~~~~~~~~SpDG~~l~--~~~~~~~~~i~~~d~~~~~~~~ 232 (582)
T 3o4h_A 164 IAGLGFFG---G-----GRVSLFTSNLSSGGLRVF-DSGEGSFSSASISPGMKVTA--GLETAREARLVTVDPRDGSVED 232 (582)
T ss_dssp EEEEEEEE---T-----TEEEEEEEETTTCCCEEE-CCSSCEEEEEEECTTSCEEE--EEECSSCEEEEEECTTTCCEEE
T ss_pred EEEEEEcC---C-----CCeEEEEEcCCCCCceEe-ecCCCccccceECCCCCEEE--EccCCCeeEEEEEcCCCCcEEE
Confidence 87653221 1 113478888766543333 34467789999999999999 355566 89999997554443
Q ss_pred c--CCcCeeEEE--------ECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCce
Q 013884 234 L--GSGPYNTVR--------WNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRL 303 (434)
Q Consensus 234 ~--~~~~~~~i~--------~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl 303 (434)
+ +...+..+. |||||++++++. .+|.+.+|++ ++.+.... ..+..++|| ||+.+++++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~---~~g~~~l~~~--g~~~~~~~-~~v~~~~~s-dg~~l~~~s~---- 301 (582)
T 3o4h_A 233 LELPSKDFSSYRPTAITWLGYLPDGRLAVVAR---REGRSAVFID--GERVEAPQ-GNHGRVVLW-RGKLVTSHTS---- 301 (582)
T ss_dssp CCCSCSHHHHHCCSEEEEEEECTTSCEEEEEE---ETTEEEEEET--TEEECCCS-SEEEEEEEE-TTEEEEEEEE----
T ss_pred ccCCCcChhhhhhccccceeEcCCCcEEEEEE---cCCcEEEEEE--CCeeccCC-CceEEEEec-CCEEEEEEcC----
Confidence 3 344455566 999997777776 4579999999 76654322 345569999 9999998887
Q ss_pred eeCC---cEEEEeecC
Q 013884 304 QIDN---GIKIFHHNG 316 (434)
Q Consensus 304 ~~D~---~i~iw~~~g 316 (434)
+. .+.+|+..+
T Consensus 302 --~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 302 --LSTPPRIVSLPSGE 315 (582)
T ss_dssp --TTEEEEEEEETTCC
T ss_pred --CCCCCeEEEEcCCC
Confidence 54 355666554
No 134
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.86 E-value=5.5e-20 Score=176.11 Aligned_cols=274 Identities=11% Similarity=0.089 Sum_probs=187.8
Q ss_pred EEcCCCcEEEEEeecCcCCCCCCeeeecCC---CcEEEEec-CCeEEEEeCCCCCCc--eeeeeecCCeeEEEEeCCCCC
Q 013884 31 WKTETGEAVYQLFQKNMTKTTWPSIRFSSD---EAVACRMA-TNEIQFFDTTDFPKG--ILYRLRVPGVAAFEVSKAPGS 104 (434)
Q Consensus 31 Wd~~~g~~~~~~~~~~~~~~~~~~~~~S~d---~~~la~~~-~~~i~v~~~~~~~~~--~~~~~~~~~v~~~~~sp~~~~ 104 (434)
|+....+.+..+.. |...+.+++|+|| |++|+++. ++.|+||++...... .....+...|..++|+|+ +.
T Consensus 24 ~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~ 99 (368)
T 3mmy_A 24 DNHNPMKDIEVTSS---PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDD-GS 99 (368)
T ss_dssp CSSCTTCCEECSSC---CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTT-SS
T ss_pred CCCCCcceeEeccC---CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcC-CC
Confidence 33444455555544 3477889999999 59999885 679999999863322 233445678999999998 45
Q ss_pred eEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEE--CCCCCeEEEEEEecccccCceeecceeEEEEee
Q 013884 105 HVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW--NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT 182 (434)
Q Consensus 105 ~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w--s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~ 182 (434)
.+++ .+.++.|++|++.. ...+. ...+...+..+.| +++|..++... .|.. +..+++
T Consensus 100 ~l~s-----~~~dg~v~iwd~~~---~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~---~dg~---------i~vwd~ 158 (368)
T 3mmy_A 100 KVFT-----ASCDKTAKMWDLSS---NQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGS---WDKT---------LKFWDT 158 (368)
T ss_dssp EEEE-----EETTSEEEEEETTT---TEEEE-EEECSSCEEEEEEEECSSCEEEEEEE---TTSE---------EEEECS
T ss_pred EEEE-----EcCCCcEEEEEcCC---CCcee-eccccCceEEEEEEeCCCCCEEEEcc---CCCc---------EEEEEC
Confidence 5553 24567999999987 44443 5568888999999 89888765432 2333 333333
Q ss_pred CCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee--EEEc---CCcCeeEEEECCCCCe----EEE
Q 013884 183 DGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP--ILEL---GSGPYNTVRWNPKGKF----LCL 253 (434)
Q Consensus 183 ~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~--~~~~---~~~~~~~i~~sP~g~~----l~~ 253 (434)
... .....+.....+..+.+.++ .+++ +..++.+.+||++... .... ......++.+.+++.. +++
T Consensus 159 ~~~-~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (368)
T 3mmy_A 159 RSS-NPMMVLQLPERCYCADVIYP--MAVV--ATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFAL 233 (368)
T ss_dssp SCS-SCSEEEECSSCEEEEEEETT--EEEE--EEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEE
T ss_pred CCC-cEEEEEecCCCceEEEecCC--eeEE--EeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEE
Confidence 332 22223333456667776654 4553 4557799999996432 2222 3455667777666654 888
Q ss_pred EecCCCCCeEEEEEccCC---EEEEEeeCC--------------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-
Q 013884 254 AGFGNLPGDMAFWDYVDG---KQLGTTRAE--------------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN- 315 (434)
Q Consensus 254 ~~~~~~~g~i~iwd~~~~---~~i~~~~~~--------------~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~- 315 (434)
++ .+|.|.+||+... +.+..+..+ .+..++|+|||++|++++. |+.|+|||+.
T Consensus 234 ~~---~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~------dg~i~iwd~~~ 304 (368)
T 3mmy_A 234 GS---IEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS------DGRFSFWDKDA 304 (368)
T ss_dssp EE---TTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEET------TSCEEEEETTT
T ss_pred ec---CCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEcc------CCeEEEEECCC
Confidence 88 5679999999876 344455544 3667999999999999999 9999999996
Q ss_pred Cceeeee--ecccceeeEEEcCCCCCCCCc
Q 013884 316 GSLFFKK--MFDKLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 316 g~~~~~~--~~~~~~~~~w~p~~~~~~~~~ 343 (434)
++++... +...+..+.|.|++..++...
T Consensus 305 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s 334 (368)
T 3mmy_A 305 RTKLKTSEQLDQPISACCFNHNGNIFAYAS 334 (368)
T ss_dssp TEEEEECCCCSSCEEEEEECTTSSCEEEEE
T ss_pred CcEEEEecCCCCCceEEEECCCCCeEEEEe
Confidence 4555443 346799999999998888764
No 135
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.86 E-value=9.1e-20 Score=199.75 Aligned_cols=308 Identities=11% Similarity=-0.002 Sum_probs=196.7
Q ss_pred cceEEecCCCcEEEEEecCCC-CCCCcEEEEEcCCCcEEEEEeec-----------------------------------
Q 013884 2 LLLLTCLRVGLIIQTFQKSST-PQEKNVILWKTETGEAVYQLFQK----------------------------------- 45 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~-~~d~~v~iWd~~~g~~~~~~~~~----------------------------------- 45 (434)
+.+++|||||+.|++.+.... ..+..|++|++.+++........
T Consensus 109 ~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw 188 (1045)
T 1k32_A 109 TDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIW 188 (1045)
T ss_dssp SEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEE
T ss_pred cccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEE
Confidence 478999999996666542111 12246888888776542211000
Q ss_pred -----------CcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeee-ecCCeeEEEEeCCCCCeEEEEecC
Q 013884 46 -----------NMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRL-RVPGVAAFEVSKAPGSHVAVFVPE 112 (434)
Q Consensus 46 -----------~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~~ia~~~~~ 112 (434)
..+...+.++.|++| .+++++ .++.++||.+..... ....+ ....+..+.|||++ ..+++.
T Consensus 189 ~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~-~~~~l~~~~~~~~~~~SpDG-~~la~~--- 262 (1045)
T 1k32_A 189 IEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGK-DLRKHTSFTDYYPRHLNTDG-RRILFS--- 262 (1045)
T ss_dssp EEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSC-SCEECCCCCSSCEEEEEESS-SCEEEE---
T ss_pred EECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCC-cceEecCCCCcceeeEcCCC-CEEEEE---
Confidence 002234456788888 444444 346778887543111 11111 22346677999984 445442
Q ss_pred CCCCCceEEEEEcCCCCCCCceeeeee-----------cccceeEEEEC-CCCCeEEEEEEecccccCceeecceeEEEE
Q 013884 113 SKGSPASVQIYACGKDLQSQPLARRSF-----------FRCSTVQLNWN-RGSTGLLAVAQSDVDKTNQSYYGESKLNYL 180 (434)
Q Consensus 113 ~~~~~~~v~i~~~~~~~~~~~i~~~~~-----------~~~~~~~~~ws-~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l 180 (434)
..+.|.+|++. ...+..... +...+..+.|+ |+|+.|++.. ...++.+
T Consensus 263 ---~~~~i~~~d~~----~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-------------~~~i~~~ 322 (1045)
T 1k32_A 263 ---KGGSIYIFNPD----TEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-------------RGQAFIQ 322 (1045)
T ss_dssp ---ETTEEEEECTT----TCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-------------TTEEEEE
T ss_pred ---eCCEEEEecCC----ceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-------------cCEEEEE
Confidence 24678889873 233333222 22356789999 9999987753 1136666
Q ss_pred eeCCCceeeeecCCCC-CeEEEEECcCCCEEEEEEccCCCeEE-EEeccceeEEEc--CCcCeeEEEECCCCCeEEEEec
Q 013884 181 TTDGTHEGLVPLRKEG-PVHDVQWSYSGSEFAVVYGFMPASAT-IFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGF 256 (434)
Q Consensus 181 ~~~~~~~~~v~l~~~~-~i~~~~wspdg~~~av~~g~~~~~i~-l~d~~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~ 256 (434)
+..+.....+ ..+.+ .+..++|+ ||+.+++++. +..+. +||+.+.....+ +...+..++|||||++|++++
T Consensus 323 ~~~~~~~~~~-~~~~~~~~~~~~~s-dg~~l~~~s~--~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~- 397 (1045)
T 1k32_A 323 DVSGTYVLKV-PEPLRIRYVRRGGD-TKVAFIHGTR--EGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAN- 397 (1045)
T ss_dssp CTTSSBEEEC-SCCSCEEEEEECSS-SEEEEEEEET--TEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEE-
T ss_pred cCCCCceEEc-cCCCcceEEeeeEc-CCCeEEEEEC--CCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEEC-
Confidence 6655432222 22345 78999999 9999997543 56888 899876555444 456788999999999999988
Q ss_pred CCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCC---c-eeeCCcEEEEeecCceeeee--ecccce
Q 013884 257 GNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAP---R-LQIDNGIKIFHHNGSLFFKK--MFDKLF 328 (434)
Q Consensus 257 ~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~---r-l~~D~~i~iw~~~g~~~~~~--~~~~~~ 328 (434)
.++.|++||+.+++.......+ .+..++|||||++|++++... . ...++.|++||+.+..+... +.....
T Consensus 398 --~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~ 475 (1045)
T 1k32_A 398 --DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDY 475 (1045)
T ss_dssp --TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEE
T ss_pred --CCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccC
Confidence 4569999999999877766444 345699999999999987620 0 00124899999976544332 334577
Q ss_pred eeEEEcCCCCCCCC
Q 013884 329 QAEWKPVSPDKFGD 342 (434)
Q Consensus 329 ~~~w~p~~~~~~~~ 342 (434)
.+.|.|++..++..
T Consensus 476 ~~~~spdG~~l~~~ 489 (1045)
T 1k32_A 476 APAFDADSKNLYYL 489 (1045)
T ss_dssp EEEECTTSCEEEEE
T ss_pred CceEcCCCCEEEEE
Confidence 89999999876643
No 136
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.86 E-value=2e-19 Score=190.00 Aligned_cols=317 Identities=10% Similarity=0.012 Sum_probs=191.9
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCC--CeeeecCCCcEEEEecC----------C
Q 013884 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTW--PSIRFSSDEAVACRMAT----------N 70 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~--~~~~~S~d~~~la~~~~----------~ 70 (434)
.++.|||||++|++. |++|++||+.+|++...+..+......+ ..+.|||||++|++..+ +
T Consensus 20 ~~~~w~~dg~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 20 YSLRWISDHEYLYKQ-------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCEEECSSSEEEEEE-------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred cccEECCCCcEEEEc-------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 578999999999873 6899999999999876665543211112 23789999999998865 5
Q ss_pred eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc---------
Q 013884 71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR--------- 141 (434)
Q Consensus 71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~--------- 141 (434)
.+.+||+..... .....+...+..++|||+ +..|++.. ...|.+|++.. +.. .+++...
T Consensus 93 ~~~~~d~~~~~~-~~l~~~~~~~~~~~~SPd-G~~la~~~------~~~i~~~~~~~---~~~-~~lt~~g~~~~~~~g~ 160 (740)
T 4a5s_A 93 SYDIYDLNKRQL-ITEERIPNNTQWVTWSPV-GHKLAYVW------NNDIYVKIEPN---LPS-YRITWTGKEDIIYNGI 160 (740)
T ss_dssp EEEEEETTTTEE-CCSSCCCTTEEEEEECSS-TTCEEEEE------TTEEEEESSTT---SCC-EECCSCCBTTTEEESB
T ss_pred EEEEEECCCCcE-EEcccCCCcceeeEECCC-CCEEEEEE------CCeEEEEECCC---Cce-EEEcCCCCccceecCc
Confidence 778999987432 112223456889999999 55565532 24788998866 332 2222211
Q ss_pred ----------cceeEEEECCCCCeEEEEEEecccccCcee--------------------------ecceeEEEEeeCC-
Q 013884 142 ----------CSTVQLNWNRGSTGLLAVAQSDVDKTNQSY--------------------------YGESKLNYLTTDG- 184 (434)
Q Consensus 142 ----------~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~--------------------------~g~~~l~~l~~~~- 184 (434)
.....+.|||||+.|++....+.. ...| .....|+.+++.+
T Consensus 161 ~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~--v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~ 238 (740)
T 4a5s_A 161 TDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTE--VPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSL 238 (740)
T ss_dssp CCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTT--CCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSC
T ss_pred ccccccchhcCCCcceEECCCCCEEEEEEEcccC--CceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCC
Confidence 111348999999998876432210 1100 1123577777766
Q ss_pred --C---ceeeeec-----CCCCCeEEEEECcCCCEEEEEEccC--CCeEEEEecccee-------EE----EcCCcCee-
Q 013884 185 --T---HEGLVPL-----RKEGPVHDVQWSYSGSEFAVVYGFM--PASATIFNKKCRP-------IL----ELGSGPYN- 240 (434)
Q Consensus 185 --~---~~~~v~l-----~~~~~i~~~~wspdg~~~av~~g~~--~~~i~l~d~~~~~-------~~----~~~~~~~~- 240 (434)
+ ....+.. .+...+..++|||||+.+++..... ...|.+||+.+.. +. +-+...++
T Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~ 318 (740)
T 4a5s_A 239 SSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGR 318 (740)
T ss_dssp CSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSS
T ss_pred CCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEcc
Confidence 4 2223322 1455688999999998666543332 2378899975432 22 22344444
Q ss_pred ----EEEECCCCCeEE-EEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcC-CceeeCCcEEEEee
Q 013884 241 ----TVRWNPKGKFLC-LAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTA-PRLQIDNGIKIFHH 314 (434)
Q Consensus 241 ----~i~~sP~g~~l~-~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~-~rl~~D~~i~iw~~ 314 (434)
.+.|||||+.|+ ..+..+....|++||..+++......+...+.-.+++||+.|+..+.. ..-.....|...++
T Consensus 319 ~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~ 398 (740)
T 4a5s_A 319 FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL 398 (740)
T ss_dssp SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEET
T ss_pred CcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEEC
Confidence 789999999887 665443345799999988766555555433332233568887776652 00000123444444
Q ss_pred cCceee-eee------cccceeeEEEcCCCCCC
Q 013884 315 NGSLFF-KKM------FDKLFQAEWKPVSPDKF 340 (434)
Q Consensus 315 ~g~~~~-~~~------~~~~~~~~w~p~~~~~~ 340 (434)
.|.... ... ......+.|+|++..++
T Consensus 399 ~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~ 431 (740)
T 4a5s_A 399 IDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQ 431 (740)
T ss_dssp TEEEEEEESSTTTSTTTBCBEEEEECTTSSEEE
T ss_pred CCCCcceeeccccCCCCCceEEEEECCCCCEEE
Confidence 554322 111 13467888998876543
No 137
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=3.8e-19 Score=168.44 Aligned_cols=268 Identities=10% Similarity=0.004 Sum_probs=180.5
Q ss_pred cEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCC-CCCeeeecCCCcEEEEe--cCCeEEEEeCCCCCCceeeee
Q 013884 12 LIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKT-TWPSIRFSSDEAVACRM--ATNEIQFFDTTDFPKGILYRL 88 (434)
Q Consensus 12 ~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~-~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~~~~~~ 88 (434)
.+|++.+ .++.|.+||+.+++.+..+..... . ....++|+|||++++.. .++.|.+||..+.... ..+
T Consensus 2 ~~~v~~~-----~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~--~~~ 72 (337)
T 1pby_B 2 DYILAPA-----RPDKLVVIDTEKMAVDKVITIADA--GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL--GRI 72 (337)
T ss_dssp EEEEEEE-----TTTEEEEEETTTTEEEEEEECTTC--TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE--EEE
T ss_pred cEEEEcC-----CCCeEEEEECCCCcEEEEEEcCCC--CCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeE--eeE
Confidence 5788887 789999999999998888765421 1 34589999999866544 3569999998775432 223
Q ss_pred ecC-------CeeEEEEeCCCCCeEEEEecC----CCC---CCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013884 89 RVP-------GVAAFEVSKAPGSHVAVFVPE----SKG---SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST 154 (434)
Q Consensus 89 ~~~-------~v~~~~~sp~~~~~ia~~~~~----~~~---~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~ 154 (434)
... .+..++|+|++ ..+++.... ... .++.|.+|++.. .+.+..... ......+.|+|+|+
T Consensus 73 ~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~-~~~~~~~~~s~dg~ 147 (337)
T 1pby_B 73 DLSTPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAET---LSRRKAFEA-PRQITMLAWARDGS 147 (337)
T ss_dssp ECCBTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTT---TEEEEEEEC-CSSCCCEEECTTSS
T ss_pred EcCCcccccccccceEECCCC-CEEEEEecccccccccccccCceEEEEECCC---CcEEEEEeC-CCCcceeEECCCCC
Confidence 221 56788999984 444333210 011 357899999976 555544443 33456789999999
Q ss_pred eEEEEEEecccccCceeecceeEEEEeeCCCcee-eeecCCCCCeEEEEECcCCCEEEEEEccCCC--------------
Q 013884 155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG-LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA-------------- 219 (434)
Q Consensus 155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~-~v~l~~~~~i~~~~wspdg~~~av~~g~~~~-------------- 219 (434)
.|++. + ..++.++....... .+.... ....+.|+|||+.+++. +...+
T Consensus 148 ~l~~~-----~---------~~i~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~-~~~~~~~~~~~~~~~~~~~ 210 (337)
T 1pby_B 148 KLYGL-----G---------RDLHVMDPEAGTLVEDKPIQS--WEAETYAQPDVLAVWNQ-HESSGVMATPFYTARKDID 210 (337)
T ss_dssp CEEEE-----S---------SSEEEEETTTTEEEEEECSTT--TTTTTBCCCBCCCCCCC-CTTTTEEEEEEEEEBTTSC
T ss_pred EEEEe-----C---------CeEEEEECCCCcEeeeeeccc--cCCCceeCCCccEEeee-ccCCCceeeeeeccccccc
Confidence 87664 1 12556665443221 222221 11234889999877642 32222
Q ss_pred ---------eEEEEeccceeEEE--c--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEE
Q 013884 220 ---------SATIFNKKCRPILE--L--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTS 285 (434)
Q Consensus 220 ---------~i~l~d~~~~~~~~--~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~ 285 (434)
.+.+||++...+.. + +......++|+|+|++|+++. +.|.+||+.+++.+..+..+ .+..+
T Consensus 211 ~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~ 285 (337)
T 1pby_B 211 PADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY-----NVLESFDLEKNASIKRVPLPHSYYSV 285 (337)
T ss_dssp TTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE-----SEEEEEETTTTEEEEEEECSSCCCEE
T ss_pred cccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEeC-----CeEEEEECCCCcCcceecCCCceeeE
Confidence 46888986543322 2 345667899999999998872 69999999999888777644 56679
Q ss_pred EECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeee
Q 013884 286 EWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK 321 (434)
Q Consensus 286 ~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~ 321 (434)
+|+|||++|++++. |+.|++||.. ++.+..
T Consensus 286 ~~s~dg~~l~~~~~------~~~i~v~d~~~~~~~~~ 316 (337)
T 1pby_B 286 NVSTDGSTVWLGGA------LGDLAAYDAETLEKKGQ 316 (337)
T ss_dssp EECTTSCEEEEESB------SSEEEEEETTTCCEEEE
T ss_pred EECCCCCEEEEEcC------CCcEEEEECcCCcEEEE
Confidence 99999999999876 9999999984 454443
No 138
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.86 E-value=1.1e-19 Score=199.17 Aligned_cols=291 Identities=11% Similarity=0.028 Sum_probs=196.4
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC-CcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET-GEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~-g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~ 80 (434)
|.++.|||+ .++++.+ .|+.+.||.+.. +..+..+..+ ..+..+.|||||++++++.+++|.+|+...
T Consensus 206 v~~~~~s~d-~l~~~~~-----~dg~~~l~~~~~~g~~~~~l~~~----~~~~~~~~SpDG~~la~~~~~~i~~~d~~~- 274 (1045)
T 1k32_A 206 VSSPVIVGH-RIYFITD-----IDGFGQIYSTDLDGKDLRKHTSF----TDYYPRHLNTDGRRILFSKGGSIYIFNPDT- 274 (1045)
T ss_dssp CEEEEEETT-EEEEEEC-----TTSSCEEEEEETTSCSCEECCCC----CSSCEEEEEESSSCEEEEETTEEEEECTTT-
T ss_pred ccceEEeCC-EEEEEEe-----ccCceEEEEEeCCCCcceEecCC----CCcceeeEcCCCCEEEEEeCCEEEEecCCc-
Confidence 567889998 5555544 567788887642 3334444333 235578999999999999899999999833
Q ss_pred CCceeeeeec-------------CCeeEEEEe-CCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc-cee
Q 013884 81 PKGILYRLRV-------------PGVAAFEVS-KAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC-STV 145 (434)
Q Consensus 81 ~~~~~~~~~~-------------~~v~~~~~s-p~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~-~~~ 145 (434)
.. ...+.. ..+..++|| |+ +..+++.. .+.+.+|++.. +. ......+.. ...
T Consensus 275 ~~--l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pd-G~~la~~~------~~~i~~~~~~~---~~-~~~~~~~~~~~~~ 341 (1045)
T 1k32_A 275 EK--IEKIEIGDLESPEDRIISIPSKFAEDFSPLD-GDLIAFVS------RGQAFIQDVSG---TY-VLKVPEPLRIRYV 341 (1045)
T ss_dssp CC--EEECCCCCCCBCCSEEEECGGGGEEEEEECG-GGCEEEEE------TTEEEEECTTS---SB-EEECSCCSCEEEE
T ss_pred eE--eeeeccCcccccccccccccccceeeecCCC-CCEEEEEE------cCEEEEEcCCC---Cc-eEEccCCCcceEE
Confidence 21 112221 258899999 98 45555433 35788888765 33 333444444 677
Q ss_pred EEEECCCCCeEEEEEEecccccCceeecceeEE-EEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 013884 146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLN-YLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIF 224 (434)
Q Consensus 146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~-~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~ 224 (434)
.+.|+ +|+.|++... ...++ .++..+.....+. .+...+..++|||||+.+++ +..++.+.+|
T Consensus 342 ~~~~s-dg~~l~~~s~------------~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG~~la~--~~~~~~v~~~ 405 (1045)
T 1k32_A 342 RRGGD-TKVAFIHGTR------------EGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGKFAVV--ANDRFEIMTV 405 (1045)
T ss_dssp EECSS-SEEEEEEEET------------TEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSSEEEE--EETTSEEEEE
T ss_pred eeeEc-CCCeEEEEEC------------CCceEEEEECCCCCceEec-CCccceeeeEECCCCCEEEE--ECCCCeEEEE
Confidence 89999 9998876531 12466 6666555433333 45678999999999999995 4557799999
Q ss_pred eccceeEEE---cCCcCeeEEEECCCCCeEEEEecC-------CCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCC
Q 013884 225 NKKCRPILE---LGSGPYNTVRWNPKGKFLCLAGFG-------NLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGR 292 (434)
Q Consensus 225 d~~~~~~~~---~~~~~~~~i~~sP~g~~l~~~~~~-------~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~ 292 (434)
|++...+.. .+.+.+..++|||||++|++++.+ ..++.|++||+.+++ +..+..+ ....++|+|||+
T Consensus 406 d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~ 484 (1045)
T 1k32_A 406 DLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSK 484 (1045)
T ss_dssp ETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSC
T ss_pred ECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCC
Confidence 997543332 366778999999999999887642 123589999999987 4444433 345589999999
Q ss_pred EEEEEEcCCceeeCCcEEEEeecCceeeeeecccceeeEEEcCCCCC
Q 013884 293 YFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDK 339 (434)
Q Consensus 293 ~l~tas~~~rl~~D~~i~iw~~~g~~~~~~~~~~~~~~~w~p~~~~~ 339 (434)
+|++++. ++..++|+.....+.......++.+.+.+.....
T Consensus 485 ~l~~~s~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (1045)
T 1k32_A 485 NLYYLSY------RSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNP 525 (1045)
T ss_dssp EEEEEES------CCCCCEECSSSSCEECCSCBEEEEEESSTTCCCG
T ss_pred EEEEEec------ccCCcCcchhccccccccCceeEEEEeCCCCCCc
Confidence 9999998 8888889864332222222345555555554443
No 139
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.85 E-value=3.2e-20 Score=175.80 Aligned_cols=227 Identities=16% Similarity=0.197 Sum_probs=160.8
Q ss_pred eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC--CCeEEEEEEecc
Q 013884 87 RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG--STGLLAVAQSDV 164 (434)
Q Consensus 87 ~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~--G~~l~~~~~~~~ 164 (434)
..|...|.+++|+|+ +..++. ++.++.|+||++.... ...+.....|...+..+.|+++ |+.|+. ...
T Consensus 10 ~~H~~~V~~v~~s~~-g~~las-----gs~D~~v~lwd~~~~~-~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s---~s~ 79 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYY-GTRLAT-----CSSDRSVKIFDVRNGG-QILIADLRGHEGPVWQVAWAHPMYGNILAS---CSY 79 (316)
T ss_dssp ----CCEEEEEECGG-GCEEEE-----EETTTEEEEEEEETTE-EEEEEEEECCSSCEEEEEECCGGGSSCEEE---EET
T ss_pred ccccCeEEEeeEcCC-CCEEEE-----EeCCCeEEEEEecCCC-cEEEEEEcCCCccEEEEEeCCCCCCCEEEE---EEC
Confidence 346678999999998 455553 3567899999997621 1245667778899999999863 776543 235
Q ss_pred cccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcC--CCEEEEEEccCCCeEEEEecccee----EEE--cC
Q 013884 165 DKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYS--GSEFAVVYGFMPASATIFNKKCRP----ILE--LG 235 (434)
Q Consensus 165 d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspd--g~~~av~~g~~~~~i~l~d~~~~~----~~~--~~ 235 (434)
|.+.+.|. +.. +.......+ .+.+.|.+++|+|+ |..|+ ++..|+.+++||++... ... .|
T Consensus 80 D~~v~iWd-------~~~-~~~~~~~~~~~h~~~V~~v~~~p~~~g~~la--sgs~D~~i~lwd~~~~~~~~~~~~~~~h 149 (316)
T 3bg1_A 80 DRKVIIWR-------EEN-GTWEKSHEHAGHDSSVNSVCWAPHDYGLILA--CGSSDGAISLLTYTGEGQWEVKKINNAH 149 (316)
T ss_dssp TSCEEEEC-------CSS-SCCCEEEEECCCSSCCCEEEECCTTTCSCEE--EECSSSCEEEEEECSSSCEEECCBTTSS
T ss_pred CCEEEEEE-------CCC-CcceEEEEccCCCCceEEEEECCCCCCcEEE--EEcCCCCEEEEecCCCCCcceeeeeccc
Confidence 55555432 211 111122222 35789999999998 66677 68889999999987431 122 26
Q ss_pred CcCeeEEEECCC-----------------CCeEEEEecCCCCCeEEEEEccCC---EEEEEeeCC--CceEEEECCCC--
Q 013884 236 SGPYNTVRWNPK-----------------GKFLCLAGFGNLPGDMAFWDYVDG---KQLGTTRAE--CSVTSEWSPDG-- 291 (434)
Q Consensus 236 ~~~~~~i~~sP~-----------------g~~l~~~~~~~~~g~i~iwd~~~~---~~i~~~~~~--~~~~~~wspdg-- 291 (434)
...++++.|+|+ +++|++++ .+|.|++||+... +.+..+.+| .+..++|+|++
T Consensus 150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs---~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~ 226 (316)
T 3bg1_A 150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGG---CDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGL 226 (316)
T ss_dssp SSCBCCCEECCCCCC------CCSCCCCCCCBEECCB---TTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSC
T ss_pred cCCcceEEEccccCCccccccccccCccccceEEEec---CCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCC
Confidence 778999999998 47888888 5679999999754 566777766 46679999997
Q ss_pred --CEEEEEEcCCceeeCCcEEEEeecCc-------eeeeeecccceeeEEEcCCCCCCCC
Q 013884 292 --RYFMTATTAPRLQIDNGIKIFHHNGS-------LFFKKMFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 292 --~~l~tas~~~rl~~D~~i~iw~~~g~-------~~~~~~~~~~~~~~w~p~~~~~~~~ 342 (434)
.+|++++. |+.|+||++... .+...+...++.++|+|++..++..
T Consensus 227 ~~~~las~s~------D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~ 280 (316)
T 3bg1_A 227 PTSTIASCSQ------DGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVS 280 (316)
T ss_dssp SCCEEEEEET------TCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEE
T ss_pred CCceEEEEcC------CCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEE
Confidence 89999999 999999998641 1223345679999999998877765
No 140
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.85 E-value=1.3e-19 Score=190.69 Aligned_cols=316 Identities=9% Similarity=-0.008 Sum_probs=190.6
Q ss_pred eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----------CeEE
Q 013884 4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----------NEIQ 73 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----------~~i~ 73 (434)
.++|||||+++++. .|++|++||+.+|++...+..+......+.+++|||||++|+++.+ ++|+
T Consensus 20 ~~~~s~dg~~~~~~------~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~ 93 (719)
T 1z68_A 20 FPNWISGQEYLHQS------ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYY 93 (719)
T ss_dssp CCEESSSSEEEEEC------TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred ccEECCCCeEEEEc------CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEE
Confidence 57899999877653 4789999999999886665443210113558999999999998754 6999
Q ss_pred EEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-eecc-----------
Q 013884 74 FFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-SFFR----------- 141 (434)
Q Consensus 74 v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-~~~~----------- 141 (434)
+||+..........+. ..+..++|||+ +..|++.. .+.|++|++.. +...... ....
T Consensus 94 ~~d~~~g~~~~~~~l~-~~~~~~~~SPD-G~~la~~~------~~~i~~~~~~~---g~~~~l~~~~~~~~v~~g~~~~v 162 (719)
T 1z68_A 94 IYDLSNGEFVRGNELP-RPIQYLCWSPV-GSKLAYVY------QNNIYLKQRPG---DPPFQITFNGRENKIFNGIPDWV 162 (719)
T ss_dssp EEETTTTEECCSSCCC-SSBCCEEECSS-TTCEEEEE------TTEEEEESSTT---SCCEECCCCCBTTTEEESSCCHH
T ss_pred EEECCCCccccceecC-cccccceECCC-CCEEEEEE------CCeEEEEeCCC---CCcEEEecCCCcCCeEcccccce
Confidence 9998764321002222 46888999999 45565432 24899999876 3332211 1111
Q ss_pred ------cceeEEEECCCCCeEEEEEEecccccCcee------------------------ecceeEEEEeeCCCcee-ee
Q 013884 142 ------CSTVQLNWNRGSTGLLAVAQSDVDKTNQSY------------------------YGESKLNYLTTDGTHEG-LV 190 (434)
Q Consensus 142 ------~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~------------------------~g~~~l~~l~~~~~~~~-~v 190 (434)
.....+.|||||+.|++....+. ....| .....|+.+++.+.... .+
T Consensus 163 ~~ee~~~~~~~~~wSPDG~~la~~~~d~~--~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~ 240 (719)
T 1z68_A 163 YEEEMLATKYALWWSPNGKFLAYAEFNDT--DIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQ 240 (719)
T ss_dssp HHHHTTCSSCCEEECTTSSEEEEEEEECT--TSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCE
T ss_pred eeeecccCcccEEECCCCCEEEEEEECCC--CCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcccee
Confidence 11147999999999887643211 11111 02235777777665321 01
Q ss_pred ec-------CCCCCeEEEEECcCCCEEEEEEccCC--CeEEEEe----ccceeE---E----EcCCcCee-----EEEEC
Q 013884 191 PL-------RKEGPVHDVQWSYSGSEFAVVYGFMP--ASATIFN----KKCRPI---L----ELGSGPYN-----TVRWN 245 (434)
Q Consensus 191 ~l-------~~~~~i~~~~wspdg~~~av~~g~~~--~~i~l~d----~~~~~~---~----~~~~~~~~-----~i~~s 245 (434)
.+ .+.+.+.+++||||++.++....... ..|.+|| ...... . ..+.+.+. .+.||
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s 320 (719)
T 1z68_A 241 EVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFS 320 (719)
T ss_dssp ECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEEC
T ss_pred EccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEEC
Confidence 22 24567899999999754443222222 2588889 653322 2 22345555 78999
Q ss_pred CCCCeEEEE-ecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec---Cce-e
Q 013884 246 PKGKFLCLA-GFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN---GSL-F 319 (434)
Q Consensus 246 P~g~~l~~~-~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~---g~~-~ 319 (434)
|||+.|++. +..+....|++||+.+++......+. .+..+.++ ||+.|+..+..- -..++.++||.+. |.. .
T Consensus 321 pdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~-~~~~~~~~l~~~~~~~g~~~~ 398 (719)
T 1z68_A 321 YDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEF-EEYPGRRNIYRISIGSYPPSK 398 (719)
T ss_dssp TTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCG-GGCTTCBEEEEEECSSSSCCE
T ss_pred CCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecC-CCCCceEEEEEEeCCCCCCCc
Confidence 999977663 32222347888898776533322222 34455666 999988888610 0002778899884 321 1
Q ss_pred eeee------cccceeeEEEcCCCCCC
Q 013884 320 FKKM------FDKLFQAEWKPVSPDKF 340 (434)
Q Consensus 320 ~~~~------~~~~~~~~w~p~~~~~~ 340 (434)
.... ...+..+.|+|++..++
T Consensus 399 ~~l~~~~~~~~~~~~~~~~s~dg~~l~ 425 (719)
T 1z68_A 399 KCVTCHLRKERCQYYTASFSDYAKYYA 425 (719)
T ss_dssp EESSTTTTTTTBCBEEEEECGGGSSEE
T ss_pred eeccCccCCCCCceEEEEECCCCCEEE
Confidence 1111 12456788888876654
No 141
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.85 E-value=3.3e-19 Score=171.55 Aligned_cols=228 Identities=14% Similarity=0.222 Sum_probs=166.2
Q ss_pred eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC--CCeEEEEEEe
Q 013884 85 LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG--STGLLAVAQS 162 (434)
Q Consensus 85 ~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~--G~~l~~~~~~ 162 (434)
....|...|.+++|+|+ +..+++ .+.++.|+||++.... ...+.....|...+..+.|+++ |..|+..
T Consensus 6 ~~~~h~~~v~~~~~s~~-~~~l~~-----~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~--- 75 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYY-GKRLAT-----CSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGTILASC--- 75 (379)
T ss_dssp CEEECCCCEEEEEECSS-SSEEEE-----EETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCSEEEEE---
T ss_pred EecCCcccEEEEEEcCC-CCEEEE-----EECCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCCEEEEe---
Confidence 45667788999999998 455553 2456789999997421 4556667778889999999987 7776543
Q ss_pred cccccCceeecceeEEEEeeCCCc--eeeeecCCCCCeEEEEECcC--CCEEEEEEccCCCeEEEEeccce---eE--EE
Q 013884 163 DVDKTNQSYYGESKLNYLTTDGTH--EGLVPLRKEGPVHDVQWSYS--GSEFAVVYGFMPASATIFNKKCR---PI--LE 233 (434)
Q Consensus 163 ~~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l~~~~~i~~~~wspd--g~~~av~~g~~~~~i~l~d~~~~---~~--~~ 233 (434)
..|...+ +|.+ .... .......+...|.+++|+|+ +..|+ ++..++.|.+||++.. .. ..
T Consensus 76 ~~dg~v~-------iwd~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~--~~~~d~~i~v~d~~~~~~~~~~~~~ 144 (379)
T 3jrp_A 76 SYDGKVL-------IWKE--ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLL--VASSDGKVSVVEFKENGTTSPIIID 144 (379)
T ss_dssp ETTSCEE-------EEEE--ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEE--EEETTSEEEEEECCTTSCCCEEEEE
T ss_pred ccCCEEE-------EEEc--CCCceeEeeeecCCCcceEEEEeCCCCCCCEEE--EecCCCcEEEEecCCCCceeeEEec
Confidence 2344333 3333 2221 11222235789999999999 88888 4677899999998643 22 23
Q ss_pred cCCcCeeEEEECC-------------CCCeEEEEecCCCCCeEEEEEccCC----EEEEEeeCC--CceEEEECCC---C
Q 013884 234 LGSGPYNTVRWNP-------------KGKFLCLAGFGNLPGDMAFWDYVDG----KQLGTTRAE--CSVTSEWSPD---G 291 (434)
Q Consensus 234 ~~~~~~~~i~~sP-------------~g~~l~~~~~~~~~g~i~iwd~~~~----~~i~~~~~~--~~~~~~wspd---g 291 (434)
.+...++++.|+| ++++|++++ .+|.|++||+.++ ..+..+.+| .+..++|+|+ +
T Consensus 145 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~ 221 (379)
T 3jrp_A 145 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG---ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR 221 (379)
T ss_dssp CCTTCEEEEEECCCC----------CTTCEEEEEE---TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred CCCCceEEEEEcCccccccccccCCCCCCEEEEEe---CCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCC
Confidence 3788999999999 699999998 5679999999865 345556555 5667999999 8
Q ss_pred CEEEEEEcCCceeeCCcEEEEeecCc------eeeee--ecccceeeEEEcCCCCCCCC
Q 013884 292 RYFMTATTAPRLQIDNGIKIFHHNGS------LFFKK--MFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 292 ~~l~tas~~~rl~~D~~i~iw~~~g~------~~~~~--~~~~~~~~~w~p~~~~~~~~ 342 (434)
++|++++. |+.|+||++... .+... +...+..+.|.|++..++..
T Consensus 222 ~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 274 (379)
T 3jrp_A 222 SYLASVSQ------DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS 274 (379)
T ss_dssp EEEEEEET------TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEE
T ss_pred CeEEEEeC------CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEe
Confidence 99999999 999999999653 11111 34578999999999887765
No 142
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.84 E-value=3.1e-17 Score=157.71 Aligned_cols=301 Identities=14% Similarity=0.122 Sum_probs=179.2
Q ss_pred EecCCCcEEEEEecCCCCCCCcEEEEEc--CCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-----CeEEEEeCC
Q 013884 6 TCLRVGLIIQTFQKSSTPQEKNVILWKT--ETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-----NEIQFFDTT 78 (434)
Q Consensus 6 ~fSP~g~~L~t~~~~~~~~d~~v~iWd~--~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-----~~i~v~~~~ 78 (434)
...+...+|...+ +....++.|.+|++ .+|+.......+. .....++|||||++|+++.. +.|.+|++.
T Consensus 8 ~~~~~~~~~~vg~-y~~~~~~~i~~~~~d~~~g~~~~~~~~~~---~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~ 83 (361)
T 3scy_A 8 STTDSELTMLVGT-YTSGNSKGIYTFRFNEETGESLPLSDAEV---ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFD 83 (361)
T ss_dssp CGGGGEEEEEEEE-CCSSSCCEEEEEEEETTTCCEEEEEEEEC---SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEE
T ss_pred hhCCCceEEEEEe-ccCCCCCCEEEEEEeCCCCCEEEeecccC---CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEe
Confidence 3445455555544 44445788999966 5676433222121 33447899999998888754 599999976
Q ss_pred CC--CCceeeeee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec-----------ccc
Q 013884 79 DF--PKGILYRLR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF-----------RCS 143 (434)
Q Consensus 79 ~~--~~~~~~~~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~-----------~~~ 143 (434)
.. ......... ......+++ + +..+.+.. ...+.|.+|++.....-..+.....+ ...
T Consensus 84 ~~~g~~~~~~~~~~~~~~p~~~~~--d-g~~l~~~~----~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~ 156 (361)
T 3scy_A 84 KEKGTLHLLNTQKTMGADPCYLTT--N-GKNIVTAN----YSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPH 156 (361)
T ss_dssp TTTTEEEEEEEEECSSSCEEEEEE--C-SSEEEEEE----TTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCC
T ss_pred CCCCcEEEeeEeccCCCCcEEEEE--C-CCEEEEEE----CCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCc
Confidence 53 111122222 223455555 4 44443322 23468999998652111111111111 112
Q ss_pred eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCC------ce-----eeeecCCCCCeEEEEECcCCCEEEE
Q 013884 144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT------HE-----GLVPLRKEGPVHDVQWSYSGSEFAV 212 (434)
Q Consensus 144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~------~~-----~~v~l~~~~~i~~~~wspdg~~~av 212 (434)
...+.|+|+|++|++... .+ +...+|.++..+. .. ....+........++|+|||+.+++
T Consensus 157 ~~~~~~spdg~~l~~~~~--~~-------~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v 227 (361)
T 3scy_A 157 LHCVRITPDGKYLLADDL--GT-------DQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYL 227 (361)
T ss_dssp EEEEEECTTSSEEEEEET--TT-------TEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred ceEEEECCCCCEEEEEeC--CC-------CEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEE
Confidence 356999999998776421 11 1112344433232 10 2233444556789999999998876
Q ss_pred EEccCCCeEEEEeccceeE---EEc-----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc--CCE--EEEEeeC-
Q 013884 213 VYGFMPASATIFNKKCRPI---LEL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV--DGK--QLGTTRA- 279 (434)
Q Consensus 213 ~~g~~~~~i~l~d~~~~~~---~~~-----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~--~~~--~i~~~~~- 279 (434)
. +..++.|.+||++...+ ..+ +......++|||||++|+++..+ .++.|.+|+++ +++ .+..+..
T Consensus 228 ~-~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~-~~~~i~v~~~~~~~g~~~~~~~~~~g 305 (361)
T 3scy_A 228 I-NEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL-KADGVAIFKVDETNGTLTKVGYQLTG 305 (361)
T ss_dssp E-ETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS-SSCEEEEEEECTTTCCEEEEEEEECS
T ss_pred E-cCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC-CCCEEEEEEEcCCCCcEEEeeEecCC
Confidence 4 55678999999864322 222 12335689999999999887754 03689999985 443 4444433
Q ss_pred CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec---Cceeee---eecccceeeEEE
Q 013884 280 ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN---GSLFFK---KMFDKLFQAEWK 333 (434)
Q Consensus 280 ~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~---g~~~~~---~~~~~~~~~~w~ 333 (434)
..+..++|+|||++|+++... ++.|.||+++ |++... .+.....++.|.
T Consensus 306 ~~~~~~~~spdg~~l~~~~~~-----~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 306 IHPRNFIITPNGKYLLVACRD-----TNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp SCCCEEEECTTSCEEEEEETT-----TTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred CCCceEEECCCCCEEEEEECC-----CCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 356679999999999999853 7899998774 544332 233566667664
No 143
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=2.6e-19 Score=165.72 Aligned_cols=230 Identities=12% Similarity=0.027 Sum_probs=154.1
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC-CcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-----CeEEEE
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET-GEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-----NEIQFF 75 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~-g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-----~~i~v~ 75 (434)
|.+++|||||++|++.+ ++.|.+||+.+ ++....+... +...+.+++|+||+++|+++.. ..|.++
T Consensus 44 v~~~~~spdg~~l~~~~------~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~ 115 (297)
T 2ojh_A 44 FEAPNWSPDGKYLLLNS------EGLLYRLSLAGDPSPEKVDTGF--ATICNNDHGISPDGALYAISDKVEFGKSAIYLL 115 (297)
T ss_dssp CEEEEECTTSSEEEEEE------TTEEEEEESSSCCSCEECCCTT--CCCBCSCCEECTTSSEEEEEECTTTSSCEEEEE
T ss_pred eEeeEECCCCCEEEEEc------CCeEEEEeCCCCCCceEecccc--ccccccceEECCCCCEEEEEEeCCCCcceEEEE
Confidence 67899999999999865 57999999999 8765544333 1245668999999999998862 255555
Q ss_pred eCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013884 76 DTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG 155 (434)
Q Consensus 76 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~ 155 (434)
+...... . .......+..+.|+|+ +..+++... ..+.++||.+... .........+......+.|+|+|+.
T Consensus 116 ~~~~~~~-~-~~~~~~~~~~~~~spd-g~~l~~~~~----~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~s~dg~~ 186 (297)
T 2ojh_A 116 PSTGGTP-R-LMTKNLPSYWHGWSPD-GKSFTYCGI----RDQVFDIYSMDID--SGVETRLTHGEGRNDGPDYSPDGRW 186 (297)
T ss_dssp ETTCCCC-E-ECCSSSSEEEEEECTT-SSEEEEEEE----ETTEEEEEEEETT--TCCEEECCCSSSCEEEEEECTTSSE
T ss_pred ECCCCce-E-EeecCCCccceEECCC-CCEEEEEEC----CCCceEEEEEECC--CCcceEcccCCCccccceECCCCCE
Confidence 5544321 1 1122335788899999 454443222 2346788887532 2344445555667789999999998
Q ss_pred EEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEcc---------CCCeEEEEec
Q 013884 156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF---------MPASATIFNK 226 (434)
Q Consensus 156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~---------~~~~i~l~d~ 226 (434)
|++.... + +...||.++..+.....+ ..+...+..++|+|+|+.+++.+.. .+..+.+||+
T Consensus 187 l~~~~~~--~-------~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~ 256 (297)
T 2ojh_A 187 IYFNSSR--T-------GQMQIWRVRVDGSSVERI-TDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDM 256 (297)
T ss_dssp EEEEECT--T-------SSCEEEEEETTSSCEEEC-CCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEET
T ss_pred EEEEecC--C-------CCccEEEECCCCCCcEEE-ecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEec
Confidence 8765321 2 223467776555432222 2235678899999999999876543 2257999998
Q ss_pred ccee---EEEc--CCcCeeEEEECCCCCeEEEEecCC
Q 013884 227 KCRP---ILEL--GSGPYNTVRWNPKGKFLCLAGFGN 258 (434)
Q Consensus 227 ~~~~---~~~~--~~~~~~~i~~sP~g~~l~~~~~~~ 258 (434)
+... +..+ +...+..+.|+|+|++|++++.+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 257 DGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp TSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 6533 3332 467889999999999999887654
No 144
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.84 E-value=2.2e-19 Score=174.30 Aligned_cols=291 Identities=10% Similarity=0.001 Sum_probs=170.4
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~v~~~~~~ 80 (434)
+..++|||||++|+..... ..+..|.+||+.+++... +.... ......+.|||||++|++... ++|.+|++...
T Consensus 38 ~~~~~~SpdG~~l~~~~~~--~g~~~l~~~d~~~~~~~~-l~~~~--~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~ 112 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDF--DGNRNYYLLNLETQQAVQ-LTEGK--GDNTFGGFISTDERAFFYVKNELNLMKVDLETL 112 (396)
T ss_dssp TTSCCBCTTSCEEEEEECT--TSSCEEEEEETTTTEEEE-CCCSS--CBCTTTCEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred eecCcCCCCCCEEEEEEec--CCCceEEEEECCCCcEEE-eecCC--CCccccceECCCCCEEEEEEcCCcEEEEECCCC
Confidence 5678899999999887632 123579999999887543 32221 122324789999999988754 58999998764
Q ss_pred CCceeeeeecCCeeE-------------------EEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc
Q 013884 81 PKGILYRLRVPGVAA-------------------FEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR 141 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~-------------------~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~ 141 (434)
........+...... +.|+|++. .+++...........|.+|++.. +.. .......
T Consensus 113 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~~~~~~~~l~~~d~~~---g~~-~~~~~~~ 187 (396)
T 3c5m_A 113 EEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS-WEKFAEFYHTNPTCRLIKVDIET---GEL-EVIHQDT 187 (396)
T ss_dssp CEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS-HHHHHHHHHTCCCEEEEEEETTT---CCE-EEEEEES
T ss_pred CcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCc-ceeeeeeccCCCcceEEEEECCC---CcE-EeeccCC
Confidence 422211211111111 12334321 11110000013445788888866 332 2233344
Q ss_pred cceeEEEECC-CCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCC-CCCeEEEEECcCCCEEEEEEccC-C
Q 013884 142 CSTVQLNWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK-EGPVHDVQWSYSGSEFAVVYGFM-P 218 (434)
Q Consensus 142 ~~~~~~~ws~-~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~-~~~i~~~~wspdg~~~av~~g~~-~ 218 (434)
.....+.|+| +|+.|+++... .... ....|+.++..+.....+.... ...+..++|+|||+.+++++... .
T Consensus 188 ~~~~~~~~sp~dg~~l~~~~~~---~~~~---~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 261 (396)
T 3c5m_A 188 AWLGHPIYRPFDDSTVGFCHEG---PHDL---VDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQ 261 (396)
T ss_dssp SCEEEEEEETTEEEEEEEEECS---CSSS---CSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTT
T ss_pred cccccceECCCCCCEEEEEecC---CCCC---CCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCC
Confidence 5667889999 88887776421 1100 0124777776554322222111 22477899999999888754321 1
Q ss_pred --CeEEEEeccceeEEEcC-CcCeeEEEECC-CCCeEEEEecC-------------CCCCeEEEEEccCCEEEEEeeCCC
Q 013884 219 --ASATIFNKKCRPILELG-SGPYNTVRWNP-KGKFLCLAGFG-------------NLPGDMAFWDYVDGKQLGTTRAEC 281 (434)
Q Consensus 219 --~~i~l~d~~~~~~~~~~-~~~~~~i~~sP-~g~~l~~~~~~-------------~~~g~i~iwd~~~~~~i~~~~~~~ 281 (434)
..|.+||+.......+. ..... +.|+| ||++|++++.+ ..++.|++||+.+++......+..
T Consensus 262 ~~~~l~~~d~~~g~~~~l~~~~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~ 340 (396)
T 3c5m_A 262 TDRVIYKANPETLENEEVMVMPPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHST 340 (396)
T ss_dssp CCEEEEEECTTTCCEEEEEECCSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCC
T ss_pred ccceEEEEECCCCCeEEeeeCCCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCC
Confidence 24999998654433321 11233 89999 99988876532 123689999998875433222222
Q ss_pred ------------ceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884 282 ------------SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 282 ------------~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~ 314 (434)
...+.|+|||++|++++.. ++...||.+
T Consensus 341 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~-----~~~~~l~~~ 380 (396)
T 3c5m_A 341 SWDVLDGDRQITHPHPSFTPNDDGVLFTSDF-----EGVPAIYIA 380 (396)
T ss_dssp CCCCBTTBSSTTCCCCEECTTSSEEEEEECT-----TSSCEEEEE
T ss_pred ccccccccccCCCCCceEccCCCeEEEEecC-----CCCceEEEE
Confidence 3458999999999988863 455556554
No 145
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1e-19 Score=174.19 Aligned_cols=243 Identities=10% Similarity=0.081 Sum_probs=157.6
Q ss_pred eecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC------
Q 013884 56 RFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD------ 128 (434)
Q Consensus 56 ~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~------ 128 (434)
.+.+|+.+|+++ .|++|++||+.+.... ..+....|..+.++|. ++. .+.++.|++|+....
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~--~~~~~~~v~~~~~~~~----~~s-----~s~D~~i~~w~~~~~~~~~~~ 111 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTI--TTITTPNPRTGGEHPA----IIS-----RGPCNRLLLLYPGNQITILDS 111 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCE--EEEEEECCCTTCCCCS----EEE-----ECSTTEEEEEETTTEEEEEET
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEE--EEEecCCceeeeeCCc----eEE-----ecCCCeEEEEEccCceEEeec
Confidence 456788899888 5789999999875532 3333445666666665 221 244567777765421
Q ss_pred CCCCceeeee-ecccceeEEEECC--CCCeEEEEEEecccccCceeecceeEEEEeeCCCceeee-ecCCCCCeEEEEEC
Q 013884 129 LQSQPLARRS-FFRCSTVQLNWNR--GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PLRKEGPVHDVQWS 204 (434)
Q Consensus 129 ~~~~~i~~~~-~~~~~~~~~~ws~--~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l~~~~~i~~~~ws 204 (434)
...+.+.... .+...+..+.|+| +|+.++.. ..|.+.+ +| ++.......+ ...+...|.+++|+
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~---s~dg~i~-------~w--d~~~~~~~~~~~~~~~~~i~~~~~~ 179 (343)
T 3lrv_A 112 KTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWA---DNRGTIG-------FQ--SYEDDSQYIVHSAKSDVEYSSGVLH 179 (343)
T ss_dssp TTCCEEEEEECCCSSCEEEEECCC---CCEEEEE---ETTCCEE-------EE--ESSSSCEEEEECCCSSCCCCEEEEC
T ss_pred CCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEE---eCCCcEE-------EE--ECCCCcEEEEEecCCCCceEEEEEC
Confidence 0033233322 3446789999999 99986543 2444443 23 3323222111 12335679999999
Q ss_pred cCCCEEEEEEccCCCeEEEEecccee-E---EEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC
Q 013884 205 YSGSEFAVVYGFMPASATIFNKKCRP-I---LEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA 279 (434)
Q Consensus 205 pdg~~~av~~g~~~~~i~l~d~~~~~-~---~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~ 279 (434)
|+|..|+ +|..|+.|++||++... + ... |.+++++++|+|+|++|++++ + +.|++||+++.+.+..+..
T Consensus 180 pdg~~la--sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~---~~v~iwd~~~~~~~~~~~~ 253 (343)
T 3lrv_A 180 KDSLLLA--LYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-D---QTVVCFDLRKDVGTLAYPT 253 (343)
T ss_dssp TTSCEEE--EECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-S---SBEEEEETTSSTTCBSSCC
T ss_pred CCCCEEE--EEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-C---CeEEEEEcCCCCcceeecc
Confidence 9999988 58889999999996432 2 333 678999999999999999998 3 2899999998765544332
Q ss_pred ---C--Cc--eEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeeeeecccceeeEEEc
Q 013884 280 ---E--CS--VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFKKMFDKLFQAEWKP 334 (434)
Q Consensus 280 ---~--~~--~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~-~~~~~~~~~~~~~~w~p 334 (434)
+ .+ ..++|+|+|++|++++.. |+.++||++... ..... .....+.|.|
T Consensus 254 ~~~~~~~~~~~~~~~~~~g~~l~~~s~~-----d~~i~v~~~~~~~~~~~~--~~~~~~~~~~ 309 (343)
T 3lrv_A 254 YTIPEFKTGTVTYDIDDSGKNMIAYSNE-----SNSLTIYKFDKKTKNWTK--DEESALCLQS 309 (343)
T ss_dssp CBC-----CCEEEEECTTSSEEEEEETT-----TTEEEEEEECTTTCSEEE--EEEEECCC--
T ss_pred cccccccccceEEEECCCCCEEEEecCC-----CCcEEEEEEcccccceEe--cCceeEecCc
Confidence 1 11 359999999999998865 889999999443 21211 3445566766
No 146
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.84 E-value=4.5e-18 Score=161.96 Aligned_cols=276 Identities=9% Similarity=0.046 Sum_probs=172.9
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCC
Q 013884 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDF 80 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~ 80 (434)
+.++|+++++++++.+ .++.|.+||+.+++.+..+..... .....++|+|||++++.. .++.|.+||+.+.
T Consensus 3 ~g~~~~~~~~~~v~~~-----~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~ 75 (349)
T 1jmx_B 3 TGPALKAGHEYMIVTN-----YPNNLHVVDVASDTVYKSCVMPDK--FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC 75 (349)
T ss_dssp -CCCCCTTCEEEEEEE-----TTTEEEEEETTTTEEEEEEECSSC--CSSCEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred ccccccCCCEEEEEeC-----CCCeEEEEECCCCcEEEEEecCCC--CCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC
Confidence 3578999999999988 789999999999998888765421 134589999999866544 3579999998764
Q ss_pred CCceeeeeecC--------CeeEEEEeCCCCCeEEEEecC-------CCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013884 81 PKGILYRLRVP--------GVAAFEVSKAPGSHVAVFVPE-------SKGSPASVQIYACGKDLQSQPLARRSFFRCSTV 145 (434)
Q Consensus 81 ~~~~~~~~~~~--------~v~~~~~sp~~~~~ia~~~~~-------~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~ 145 (434)
.. ...+... .+..++|+|++ ..+++.... .....+.|.+|++.+......+.... ......
T Consensus 76 ~~--~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~ 151 (349)
T 1jmx_B 76 KN--TFHANLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVY 151 (349)
T ss_dssp EE--EEEEESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCC
T ss_pred cE--EEEEEcccccccccccccceEECCCC-CEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCccc
Confidence 32 2233322 26789999994 444443211 00113689999987621111122222 223466
Q ss_pred EEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCc-eeeeecCCCC-----------------------CeEEE
Q 013884 146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKEG-----------------------PVHDV 201 (434)
Q Consensus 146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~~~-----------------------~i~~~ 201 (434)
.+.|+|+|+ +++. + . .++.++..... ...++....+ ....+
T Consensus 152 ~~~~s~dg~-l~~~-~--~-----------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (349)
T 1jmx_B 152 LMRAADDGS-LYVA-G--P-----------DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTI 216 (349)
T ss_dssp CEEECTTSC-EEEE-S--S-----------SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEE
T ss_pred ceeECCCCc-EEEc-c--C-----------cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeee
Confidence 788999999 5442 1 1 14444443321 1112211100 23456
Q ss_pred EECcCCCEE---------EEEEccCCCeEEEEeccceeEEEcCCcCeeEEEECC-CCCeEEEEecCCCCCeEEEEEccCC
Q 013884 202 QWSYSGSEF---------AVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNP-KGKFLCLAGFGNLPGDMAFWDYVDG 271 (434)
Q Consensus 202 ~wspdg~~~---------av~~g~~~~~i~l~d~~~~~~~~~~~~~~~~i~~sP-~g~~l~~~~~~~~~g~i~iwd~~~~ 271 (434)
++++++... .+......+++.+++... .......++|+| +|++++++ ++.|.+||+.++
T Consensus 217 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~sp~dg~~l~~~-----~~~v~~~d~~~~ 285 (349)
T 1jmx_B 217 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD------LTELYFTGLRSPKDPNQIYGV-----LNRLAKYDLKQR 285 (349)
T ss_dssp EEC-------CCCEEEEEEEEEETTTCCEEEEEEEE------CSSCEEEEEECSSCTTEEEEE-----ESEEEEEETTTT
T ss_pred eecCCCcCCccccccceeEEEEeccCCcEEeccccc------CCCcceeeEecCCCCCEEEEE-----cCeEEEEECccC
Confidence 777655221 111233344555554421 345678899999 99999887 258999999999
Q ss_pred EEEEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeee
Q 013884 272 KQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK 321 (434)
Q Consensus 272 ~~i~~~~~-~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~ 321 (434)
+.+..+.. +.+..++|+|||++|++++. ++.|++||.. ++.+..
T Consensus 286 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~------~~~v~v~d~~~~~~~~~ 331 (349)
T 1jmx_B 286 KLIKAANLDHTYYCVAFDKKGDKLYLGGT------FNDLAVFNPDTLEKVKN 331 (349)
T ss_dssp EEEEEEECSSCCCEEEECSSSSCEEEESB------SSEEEEEETTTTEEEEE
T ss_pred eEEEEEcCCCCccceEECCCCCEEEEecC------CCeEEEEeccccceeee
Confidence 88877754 35667999999999998776 8999999995 444443
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.83 E-value=3.9e-17 Score=156.08 Aligned_cols=264 Identities=9% Similarity=0.058 Sum_probs=160.7
Q ss_pred CCCcEEEEEc--CCCcEEE-EEeecCcCCCCCCeeeecCCCcEEEEec---CCeEEEEeCCCCCCceeee--eecCCeeE
Q 013884 24 QEKNVILWKT--ETGEAVY-QLFQKNMTKTTWPSIRFSSDEAVACRMA---TNEIQFFDTTDFPKGILYR--LRVPGVAA 95 (434)
Q Consensus 24 ~d~~v~iWd~--~~g~~~~-~~~~~~~~~~~~~~~~~S~d~~~la~~~---~~~i~v~~~~~~~~~~~~~--~~~~~v~~ 95 (434)
.++.|.+|++ .+|+... ...... .....++|||||++++... ++.|.+|++.......... .+...+..
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~---~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~ 90 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAAT---QNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAY 90 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEEC---SCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSE
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeecc---CCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEE
Confidence 4567777765 5665432 222211 3334789999999444443 3699999986533211122 23456888
Q ss_pred EEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec---------ccceeEEEECCCCCeEEEEEEecccc
Q 013884 96 FEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF---------RCSTVQLNWNRGSTGLLAVAQSDVDK 166 (434)
Q Consensus 96 ~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~---------~~~~~~~~ws~~G~~l~~~~~~~~d~ 166 (434)
++|+|++ ..+.+.. ...+.|.+|++........+...... ......+.|+|+|+ +++. .. .+
T Consensus 91 ~a~spdg-~~l~~~~----~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~-~~-~~- 161 (347)
T 3hfq_A 91 VAVDEAR-QLVYSAN----YHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVI-DL-GS- 161 (347)
T ss_dssp EEEETTT-TEEEEEE----TTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEE-ET-TT-
T ss_pred EEECCCC-CEEEEEe----CCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEE-eC-CC-
Confidence 9999994 4443322 23468999999641101222222111 11255799999999 5442 11 11
Q ss_pred cCceeecceeEEEEeeC--CCceee--eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc--ee---EEEc---
Q 013884 167 TNQSYYGESKLNYLTTD--GTHEGL--VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RP---ILEL--- 234 (434)
Q Consensus 167 ~~~~~~g~~~l~~l~~~--~~~~~~--v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~--~~---~~~~--- 234 (434)
..++.+++. +..... +.......+..++|+|||+++++. +..++.+.+|+++. .. +..+
T Consensus 162 --------~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~-~~~~~~v~v~~~~~~~g~~~~~~~~~~~ 232 (347)
T 3hfq_A 162 --------DKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLA-GELSSQIASLKYDTQTGAFTQLGIVKTI 232 (347)
T ss_dssp --------TEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEE-ETTTTEEEEEEEETTTTEEEEEEEEESS
T ss_pred --------CEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEE-eCCCCEEEEEEecCCCCceEEeeeeeec
Confidence 123344433 221111 122233467889999999987763 56678999998752 22 2222
Q ss_pred CC-----cCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc---CCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCcee
Q 013884 235 GS-----GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV---DGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQ 304 (434)
Q Consensus 235 ~~-----~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~---~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~ 304 (434)
.. .....++|+|||++|++++.+ ++.|.+||+. ..+.+..+..+ .+..++|+|||++|+++...
T Consensus 233 ~~~~~~~~~~~~i~~spdG~~l~v~~~~--~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~---- 306 (347)
T 3hfq_A 233 PADYTAHNGAAAIRLSHDGHFLYVSNRG--YNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQN---- 306 (347)
T ss_dssp CTTCCSCCEEEEEEECTTSCEEEEEEET--TTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETT----
T ss_pred CCCCCCCCcceeEEECCCCCEEEEEeCC--CCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcC----
Confidence 11 346789999999988766543 3699999987 33556555543 56679999999999999873
Q ss_pred eCCcEEEEeec
Q 013884 305 IDNGIKIFHHN 315 (434)
Q Consensus 305 ~D~~i~iw~~~ 315 (434)
++.+.||+++
T Consensus 307 -~~~v~v~~~d 316 (347)
T 3hfq_A 307 -TDNATLYARD 316 (347)
T ss_dssp -TTEEEEEEEC
T ss_pred -CCcEEEEEEe
Confidence 5899999763
No 148
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.83 E-value=5.1e-19 Score=186.11 Aligned_cols=296 Identities=10% Similarity=-0.008 Sum_probs=180.3
Q ss_pred cceEEecCCCcEEEEEecCCC----CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeC
Q 013884 2 LLLLTCLRVGLIIQTFQKSST----PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDT 77 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~----~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~ 77 (434)
|.+++|||||++|++.+...+ ..++.|+|||+.+|+.+...... ..+..++|||||++||++.+++|++|++
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~----~~~~~~~~SPDG~~la~~~~~~i~~~~~ 137 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP----RPIQYLCWSPVGSKLAYVYQNNIYLKQR 137 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC----SSBCCEEECSSTTCEEEEETTEEEEESS
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC----cccccceECCCCCEEEEEECCeEEEEeC
Confidence 678999999999998773110 12689999999998763111111 2344799999999999999999999998
Q ss_pred CCCCCceee-eeec-----------------CCeeEEEEeCCCCCeEEEEecCCC-------------------------
Q 013884 78 TDFPKGILY-RLRV-----------------PGVAAFEVSKAPGSHVAVFVPESK------------------------- 114 (434)
Q Consensus 78 ~~~~~~~~~-~~~~-----------------~~v~~~~~sp~~~~~ia~~~~~~~------------------------- 114 (434)
......... ..+. .....+.|||+ +..|++...+..
T Consensus 138 ~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPD-G~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~ 216 (719)
T 1z68_A 138 PGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPN-GKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPK 216 (719)
T ss_dssp TTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTT-SSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCB
T ss_pred CCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCC-CCEEEEEEECCCCCceEEeeccCCCCCccceeecCCC
Confidence 764431111 0010 11247999999 566665432211
Q ss_pred ----CCCceEEEEEcCCCCCCCce--ee------eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEe-
Q 013884 115 ----GSPASVQIYACGKDLQSQPL--AR------RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLT- 181 (434)
Q Consensus 115 ----~~~~~v~i~~~~~~~~~~~i--~~------~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~- 181 (434)
.....|.+|++.. +..+ .. ...+......+.|+|||+ +++......+ +...|+.++
T Consensus 217 ~g~~~~~~~l~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~~~~-------~~~~l~~~d~ 285 (719)
T 1z68_A 217 AGAKNPVVRIFIIDTTY---PAYVGPQEVPVPAMIASSDYYFSWLTWVTDER-VCLQWLKRVQ-------NVSVLSICDF 285 (719)
T ss_dssp TTSCCCEEEEEEEESSC---HHHHCCEECCCCHHHHTSCEEEEEEEESSSSE-EEEEEEESST-------TEEEEEEEEE
T ss_pred CCCCCCeeEEEEEECCC---CCccceeEccCCccCCCCcceEEEeEEeCCCe-EEEEEecccc-------CeEEEEEEcc
Confidence 1223788899876 3321 01 112444567899999975 4443322111 123467777
Q ss_pred ---eCCCceeeee----cCCCCCeE-----EEEECcCCCEEEEEEccCCC--eEEEEeccceeEEEcC--CcCeeEEEEC
Q 013884 182 ---TDGTHEGLVP----LRKEGPVH-----DVQWSYSGSEFAVVYGFMPA--SATIFNKKCRPILELG--SGPYNTVRWN 245 (434)
Q Consensus 182 ---~~~~~~~~v~----l~~~~~i~-----~~~wspdg~~~av~~g~~~~--~i~l~d~~~~~~~~~~--~~~~~~i~~s 245 (434)
..++....+. ..+.+.+. .++|+|||+.++++....++ .|.+||+.+.....+. ...+..+.++
T Consensus 286 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~ 365 (719)
T 1z68_A 286 REDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV 365 (719)
T ss_dssp CSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE
T ss_pred cCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE
Confidence 5443222221 12345555 78999999988875555555 6777888655445552 3446677777
Q ss_pred CCCCeEEEEecC--CCCCeEEEEEccC--CE-EEEEeeC----C--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884 246 PKGKFLCLAGFG--NLPGDMAFWDYVD--GK-QLGTTRA----E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 246 P~g~~l~~~~~~--~~~g~i~iwd~~~--~~-~i~~~~~----~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~ 314 (434)
+|+.|+..+.+ ...+.+.+|.+.. +. ....+.. + .+..+.|||||++|+.....+.. ..+.+|+.
T Consensus 366 -d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~---p~~~l~d~ 441 (719)
T 1z68_A 366 -TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGI---PISTLHDG 441 (719)
T ss_dssp -CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSS---CEEEEECS
T ss_pred -eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCC---CeEEEEEC
Confidence 88888877754 2246788887653 31 1222221 2 44568999999998876554321 35777877
Q ss_pred -cCc
Q 013884 315 -NGS 317 (434)
Q Consensus 315 -~g~ 317 (434)
+|+
T Consensus 442 ~~g~ 445 (719)
T 1z68_A 442 RTDQ 445 (719)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 444
No 149
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.82 E-value=1e-17 Score=158.77 Aligned_cols=238 Identities=10% Similarity=0.051 Sum_probs=156.2
Q ss_pred eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcE-EEEEeecCcCCCCCCeeeecCCCcEEEEecCC----eEEEEeCC
Q 013884 4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEA-VYQLFQKNMTKTTWPSIRFSSDEAVACRMATN----EIQFFDTT 78 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~-~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~----~i~v~~~~ 78 (434)
+++|||||++|++.+. .++.|.+||+.+++. +..+.... ....++.|+|||++++....+ .|.+||..
T Consensus 44 ~~~~s~dg~~l~~~~~----~~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~ 116 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSD----FCQTLVQIETQLEPPKVVAIQEGQ---SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFL 116 (331)
T ss_dssp EEEECSSSCEEEEEES----TTCEEEEEECSSSSCEEEEEEECS---SCCCCEEECTTSSEEEECCCSSSSCEEEEEETT
T ss_pred eEEEcCCCCEEEEEeC----CCCeEEEEECCCCceeEEecccCC---CCccceEECCCCCEEEEecCCCCcccEEEEECC
Confidence 7899999998887772 367999999999987 66665542 334238999999999865443 89999997
Q ss_pred CCCCceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCce-EEEEEcCCCCCCCceee----eeecccceeEEEECCC
Q 013884 79 DFPKGILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPAS-VQIYACGKDLQSQPLAR----RSFFRCSTVQLNWNRG 152 (434)
Q Consensus 79 ~~~~~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~-v~i~~~~~~~~~~~i~~----~~~~~~~~~~~~ws~~ 152 (434)
.... ...+. ......++|+|++...++. .. .... +.+|++.. ...+.. ..........+.|+|+
T Consensus 117 ~~~~--~~~~~~~~~~~~~~~spdg~~l~~~-~~----~~~~~i~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~spd 186 (331)
T 3u4y_A 117 KNKF--ISTIPIPYDAVGIAISPNGNGLILI-DR----SSANTVRRFKIDA---DGVLFDTGQEFISGGTRPFNITFTPD 186 (331)
T ss_dssp TTEE--EEEEECCTTEEEEEECTTSSCEEEE-EE----TTTTEEEEEEECT---TCCEEEEEEEEECSSSSEEEEEECTT
T ss_pred CCCe--EEEEECCCCccceEECCCCCEEEEE-ec----CCCceEEEEEECC---CCcEeecCCccccCCCCccceEECCC
Confidence 7543 22232 3457899999995443322 11 1235 89999875 222211 1122345678999999
Q ss_pred CCeEEEEEEecccccCceeecceeEEEEeeCCCce--eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee
Q 013884 153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE--GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP 230 (434)
Q Consensus 153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~--~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~ 230 (434)
|+++++.... + ..++.++...... ....+.....+..++|+|||+++++. ...++.+.+||.+...
T Consensus 187 g~~l~v~~~~--~---------~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~-~~~~~~i~~~d~~~~~ 254 (331)
T 3u4y_A 187 GNFAFVANLI--G---------NSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVL-TESTVDVFNFNQLSGT 254 (331)
T ss_dssp SSEEEEEETT--T---------TEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEE-CSSEEEEEEEETTTTE
T ss_pred CCEEEEEeCC--C---------CeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEE-EcCCCEEEEEECCCCc
Confidence 9987664311 1 1244555433321 02233335677899999999988764 4456789999987544
Q ss_pred E---EEc------CCcC---eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE
Q 013884 231 I---LEL------GSGP---YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK 272 (434)
Q Consensus 231 ~---~~~------~~~~---~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~ 272 (434)
+ ..+ +..+ .+.++|+|||++|++++.++ +.|.+||+.+..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~--~~v~v~d~~~~~ 306 (331)
T 3u4y_A 255 LSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS--RELKVFTISGKV 306 (331)
T ss_dssp EEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTT--TEEEEEETTSCE
T ss_pred eeeecccccccccCCCCcccccceEECCCCCEEEEecCCC--CcEEEEEecCCc
Confidence 3 111 1111 25689999999998877543 799999998754
No 150
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.82 E-value=1.5e-17 Score=158.78 Aligned_cols=261 Identities=6% Similarity=-0.033 Sum_probs=181.3
Q ss_pred CeeeecCCCcEEEEec--------CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEE
Q 013884 53 PSIRFSSDEAVACRMA--------TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYA 124 (434)
Q Consensus 53 ~~~~~S~d~~~la~~~--------~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~ 124 (434)
..++|+||+++++... ++.|.+||..+......... ...+..+.|+|++. .+.+.. ...+.|.+|+
T Consensus 44 ~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~-~l~v~~----~~~~~v~~~d 117 (353)
T 3vgz_A 44 YEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQ-TLWFGN----TVNSAVTAID 117 (353)
T ss_dssp EEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTT-EEEEEE----TTTTEEEEEE
T ss_pred cceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCC-EEEEEe----cCCCEEEEEe
Confidence 3789999999887765 45899999987653222222 23577889999854 333222 2345899999
Q ss_pred cCCCCCCCceeeeeeccc---------ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC-C
Q 013884 125 CGKDLQSQPLARRSFFRC---------STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-K 194 (434)
Q Consensus 125 ~~~~~~~~~i~~~~~~~~---------~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~ 194 (434)
..+ ++.+........ ....+.|+|+|+.+++.... ....++.++.... .....+. .
T Consensus 118 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----------~~~~i~~~d~~~~-~~~~~~~~~ 183 (353)
T 3vgz_A 118 AKT---GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG----------KESVIWVVDGGNI-KLKTAIQNT 183 (353)
T ss_dssp TTT---CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES----------SSCEEEEEETTTT-EEEEEECCC
T ss_pred CCC---CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC----------CCceEEEEcCCCC-ceEEEecCC
Confidence 977 566555554322 14679999999987664311 1123566665544 2222333 2
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee-EEEc------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEE
Q 013884 195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILEL------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD 267 (434)
Q Consensus 195 ~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~-~~~~------~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd 267 (434)
...++.++|+|+|+.+++ +..++.+.+||..... +..+ +......++|+|+|++|++++.+ ++.|.+||
T Consensus 184 ~~~~~~~~~s~dg~~l~~--~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~v~~~d 259 (353)
T 3vgz_A 184 GKMSTGLALDSEGKRLYT--TNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK--AAEVLVVD 259 (353)
T ss_dssp CTTCCCCEEETTTTEEEE--ECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS--SSEEEEEE
T ss_pred CCccceEEECCCCCEEEE--EcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC--CCEEEEEE
Confidence 345789999999999886 3457899999986433 3332 23346779999999988887744 37999999
Q ss_pred ccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeeeec-ccceeeEEEcCCCCCCCC
Q 013884 268 YVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKKMF-DKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 268 ~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~~~~-~~~~~~~w~p~~~~~~~~ 342 (434)
..+++.+..+..+....++|+|||++++++... ++.|.+||.. ++.+..... .....+.|.|++..+|..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~ 331 (353)
T 3vgz_A 260 TRNGNILAKVAAPESLAVLFNPARNEAYVTHRQ-----AGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVS 331 (353)
T ss_dssp TTTCCEEEEEECSSCCCEEEETTTTEEEEEETT-----TTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEE
T ss_pred CCCCcEEEEEEcCCCceEEECCCCCEEEEEECC-----CCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEE
Confidence 999988888776666679999999988777743 8999999994 555554433 357889999998876654
No 151
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.81 E-value=1.6e-17 Score=164.11 Aligned_cols=247 Identities=10% Similarity=0.153 Sum_probs=176.1
Q ss_pred CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013884 50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD 128 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~ 128 (434)
..+.+++ .|+++++++ .++.|++||............+...|.++.| + +..+++ ++.++.|++|++.+
T Consensus 134 ~~v~~~~--~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~-~~~l~s-----g~~dg~i~vwd~~~- 202 (435)
T 1p22_A 134 KGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--D-ERVIIT-----GSSDSTVRVWDVNT- 202 (435)
T ss_dssp CCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--C-SSEEEE-----EETTSCEEEEESSS-
T ss_pred CcEEEEE--ECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--C-CCEEEE-----EcCCCeEEEEECCC-
Confidence 4454544 489999888 4679999999876654444556667888887 3 445543 34567999999988
Q ss_pred CCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCcee---eeecCCCCCeEEEEECc
Q 013884 129 LQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG---LVPLRKEGPVHDVQWSY 205 (434)
Q Consensus 129 ~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~---~v~l~~~~~i~~~~wsp 205 (434)
++.+.....+...+..+.|++ ..++. ...|.... +|.+ ...... .....+.+.|.+++|
T Consensus 203 --~~~~~~~~~h~~~v~~l~~~~--~~l~s---~s~dg~i~-------vwd~--~~~~~~~~~~~~~~~~~~v~~~~~-- 264 (435)
T 1p22_A 203 --GEMLNTLIHHCEAVLHLRFNN--GMMVT---CSKDRSIA-------VWDM--ASPTDITLRRVLVGHRAAVNVVDF-- 264 (435)
T ss_dssp --CCEEEEECCCCSCEEEEECCT--TEEEE---EETTSCEE-------EEEC--SSSSCCEEEEEECCCSSCEEEEEE--
T ss_pred --CcEEEEEcCCCCcEEEEEEcC--CEEEE---eeCCCcEE-------EEeC--CCCCCceeeeEecCCCCcEEEEEe--
Confidence 778888888888999999975 34332 22343333 3332 222111 233446789999999
Q ss_pred CCCEEEEEEccCCCeEEEEeccc-eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--
Q 013884 206 SGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-- 280 (434)
Q Consensus 206 dg~~~av~~g~~~~~i~l~d~~~-~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-- 280 (434)
+++.++ +|+.++.+.+||++. ..+..+ |...+.++.| ++++|++++ .+|.|++||+.+++.+..+.+|
T Consensus 265 ~~~~l~--s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~---~dg~i~iwd~~~~~~~~~~~~h~~ 337 (435)
T 1p22_A 265 DDKYIV--SASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGS---SDNTIRLWDIECGACLRVLEGHEE 337 (435)
T ss_dssp ETTEEE--EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEE---TTSCEEEEETTTCCEEEEECCCSS
T ss_pred CCCEEE--EEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEe---CCCeEEEEECCCCCEEEEEeCCcC
Confidence 677777 577799999999964 444444 6788999998 578999998 5679999999999999988877
Q ss_pred CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc----------eeee--eecccceeeEEEcCCCCCCCC
Q 013884 281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS----------LFFK--KMFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 281 ~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~----------~~~~--~~~~~~~~~~w~p~~~~~~~~ 342 (434)
.+..++| ++.+|++++. |+.|+|||+... ++.. .+...+..+.| ++..++..
T Consensus 338 ~v~~~~~--~~~~l~sg~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~ 401 (435)
T 1p22_A 338 LVRCIRF--DNKRIVSGAY------DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSS 401 (435)
T ss_dssp CEEEEEC--CSSEEEEEET------TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEEC
T ss_pred cEEEEEe--cCCEEEEEeC------CCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEE
Confidence 3445666 8999999999 999999998432 3332 24457888888 44555554
No 152
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.81 E-value=3e-18 Score=166.21 Aligned_cols=302 Identities=11% Similarity=-0.023 Sum_probs=179.1
Q ss_pred EEEcCCCcEEEEEeecCcC--CCCCCeeeecCCCcEEEEecC--C--eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCC
Q 013884 30 LWKTETGEAVYQLFQKNMT--KTTWPSIRFSSDEAVACRMAT--N--EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPG 103 (434)
Q Consensus 30 iWd~~~g~~~~~~~~~~~~--~~~~~~~~~S~d~~~la~~~~--~--~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 103 (434)
.+|..+|..+..+..+... ..-+..++|||||++|++..+ + .|.+||+...........+...+..+.|||+ +
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spd-g 92 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPD-D 92 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTT-S
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCC-C
Confidence 3477888888877654310 011223789999999998854 3 5888888764321111111222335789999 5
Q ss_pred CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeE--EEECCCCCeEEEEEEecccccC-c---------ee
Q 013884 104 SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQ--LNWNRGSTGLLAVAQSDVDKTN-Q---------SY 171 (434)
Q Consensus 104 ~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~--~~ws~~G~~l~~~~~~~~d~~~-~---------~~ 171 (434)
..|++... ...+.+|++.. ++.............. ..++++|+.++.......+... . ..
T Consensus 93 ~~l~~~~~-----~~~l~~~d~~~---g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T 3pe7_A 93 DALFYVKD-----GRNLMRVDLAT---LEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFT 164 (388)
T ss_dssp SEEEEEET-----TTEEEEEETTT---CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGG
T ss_pred CEEEEEeC-----CCeEEEEECCC---CcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhcc
Confidence 56655432 24789999877 4443333333332222 3349999987764432211100 0 00
Q ss_pred ecceeEEEEeeCCCceeeeecCCCCCeEEEEECc-CCCEEEEEEccC----CCeEEEEeccceeEEEcCC----cCeeEE
Q 013884 172 YGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFM----PASATIFNKKCRPILELGS----GPYNTV 242 (434)
Q Consensus 172 ~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wsp-dg~~~av~~g~~----~~~i~l~d~~~~~~~~~~~----~~~~~i 242 (434)
.....|+.+++.++....+. .....+..++||| ||+.++++.... ...+.++|..+.....+.. ..+..+
T Consensus 165 ~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 243 (388)
T 3pe7_A 165 KPCCRLMRVDLKTGESTVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHE 243 (388)
T ss_dssp CCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEE
T ss_pred CCcceEEEEECCCCceEEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccc
Confidence 12246888887765433332 3356789999999 999998765432 3378888887665555532 246778
Q ss_pred EECCCCCeEEEEecCCC--CCeEEEEEccCCEE--EEEeeCC-----CceEEEECCCCCEEEEEEcCC---ceeeCCcEE
Q 013884 243 RWNPKGKFLCLAGFGNL--PGDMAFWDYVDGKQ--LGTTRAE-----CSVTSEWSPDGRYFMTATTAP---RLQIDNGIK 310 (434)
Q Consensus 243 ~~sP~g~~l~~~~~~~~--~g~i~iwd~~~~~~--i~~~~~~-----~~~~~~wspdg~~l~tas~~~---rl~~D~~i~ 310 (434)
.|||||+.|+..+..+. ++.|++||+.+++. +..+... ....+.|||||++|+...... ...-+..|+
T Consensus 244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~ 323 (388)
T 3pe7_A 244 FWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLY 323 (388)
T ss_dssp EECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEE
T ss_pred eECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEE
Confidence 99999998877654322 23499999998863 3333331 011247999999988764210 001156899
Q ss_pred EEeecCceeeeeec--c-----------cceeeEEEcCCCCCCC
Q 013884 311 IFHHNGSLFFKKMF--D-----------KLFQAEWKPVSPDKFG 341 (434)
Q Consensus 311 iw~~~g~~~~~~~~--~-----------~~~~~~w~p~~~~~~~ 341 (434)
+||..+..+..... . ....+.|+|++..++.
T Consensus 324 ~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~ 367 (388)
T 3pe7_A 324 VFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILF 367 (388)
T ss_dssp EEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEE
T ss_pred EEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEE
Confidence 99997765443321 2 3677899999876654
No 153
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.80 E-value=2.2e-17 Score=156.24 Aligned_cols=252 Identities=9% Similarity=0.062 Sum_probs=165.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc--CCCCCCeeeecCCCcEEEEec-----------
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM--TKTTWPSIRFSSDEAVACRMA----------- 68 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~--~~~~~~~~~~S~d~~~la~~~----------- 68 (434)
+.+++|||+|++|+.... .++.|.+||+.+++.+..+..... +......+.|+|||++++.+.
T Consensus 36 ~~~~~~s~dg~~l~v~~~----~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~ 111 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVN----KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFE 111 (337)
T ss_dssp CCCEEECTTSSEEEEEET----TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred ccceEEcCCCCEEEEEeC----CCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEeccccccccccc
Confidence 568999999998766552 468899999999998877764310 001445899999999888773
Q ss_pred --CCeEEEEeCCCCCCceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013884 69 --TNEIQFFDTTDFPKGILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV 145 (434)
Q Consensus 69 --~~~i~v~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~ 145 (434)
++.|.+||...... ...+. ...+..+.|+|++...+.. .+.|.+|++.+ .+.+........ ..
T Consensus 112 ~~~~~i~v~d~~~~~~--~~~~~~~~~~~~~~~s~dg~~l~~~--------~~~i~~~d~~~---~~~~~~~~~~~~-~~ 177 (337)
T 1pby_B 112 VQPTRVALYDAETLSR--RKAFEAPRQITMLAWARDGSKLYGL--------GRDLHVMDPEA---GTLVEDKPIQSW-EA 177 (337)
T ss_dssp ECCCEEEEEETTTTEE--EEEEECCSSCCCEEECTTSSCEEEE--------SSSEEEEETTT---TEEEEEECSTTT-TT
T ss_pred ccCceEEEEECCCCcE--EEEEeCCCCcceeEECCCCCEEEEe--------CCeEEEEECCC---CcEeeeeecccc-CC
Confidence 58999999976432 22232 3357788999995443332 25799999977 555444433221 12
Q ss_pred EEEECCCCCeEEEEEEecccccCceeec--------------ceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCCEE
Q 013884 146 QLNWNRGSTGLLAVAQSDVDKTNQSYYG--------------ESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEF 210 (434)
Q Consensus 146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g--------------~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~~~ 210 (434)
.+.|+|+|..+++... .+......|. ...++.++........+.+. ....+..++|+|||+++
T Consensus 178 ~~~~s~dg~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 255 (337)
T 1pby_B 178 ETYAQPDVLAVWNQHE--SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA 255 (337)
T ss_dssp TTBCCCBCCCCCCCCT--TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred CceeCCCccEEeeecc--CCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEE
Confidence 3478999987654211 1110000000 01356666555432222222 24567889999999998
Q ss_pred EEEEccCCCeEEEEeccce-eEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC
Q 013884 211 AVVYGFMPASATIFNKKCR-PILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE 280 (434)
Q Consensus 211 av~~g~~~~~i~l~d~~~~-~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~ 280 (434)
++. ++.+.+||++.. .+..+ ....+.+++|+|+|++|++++ .++.|.+||+.+++.+..+..+
T Consensus 256 ~~~----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~---~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 256 FGA----YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGG---ALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp EEE----ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEES---BSSEEEEEETTTCCEEEEEECG
T ss_pred EEe----CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEc---CCCcEEEEECcCCcEEEEEEcC
Confidence 864 479999999643 33333 345678999999999998886 3579999999999888777654
No 154
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.80 E-value=1.5e-16 Score=151.90 Aligned_cols=247 Identities=9% Similarity=0.080 Sum_probs=150.7
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcE--EEEEeecCcCCCCCCeeeecCCCcEEEEec--CCeEEEEeC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEA--VYQLFQKNMTKTTWPSIRFSSDEAVACRMA--TNEIQFFDT 77 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~--~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--~~~i~v~~~ 77 (434)
+..|+|||||+ |++.+.. ..++.|.+||+.+++. +..+.... .....++|+|||++|+++. ++.|.+|++
T Consensus 42 p~~~a~spdg~-l~~~~~~--~~~~~v~~~~~~~g~~~~~~~~~~~~---~~p~~~a~spdg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 42 PTYLALSAKDC-LYSVDKE--DDEGGIAAWQIDGQTAHKLNTVVAPG---TPPAYVAVDEARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp CCCEEECTTCE-EEEEEEE--TTEEEEEEEEEETTEEEEEEEEEEES---CCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cceEEEccCCe-EEEEEec--CCCceEEEEEecCCcEEEeeeeecCC---CCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 35789999999 6555421 1358999999987763 33333222 4455899999999887764 579999998
Q ss_pred CCCCCc-eeeeeec-----------CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCce--eeeeec-cc
Q 013884 78 TDFPKG-ILYRLRV-----------PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPL--ARRSFF-RC 142 (434)
Q Consensus 78 ~~~~~~-~~~~~~~-----------~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i--~~~~~~-~~ 142 (434)
...... ....+.. ..+..++|+|++. .++. . ...+.|.+|++... +... ...... ..
T Consensus 116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~---~--~~~~~v~~~~~~~~--g~~~~~~~~~~~~g~ 187 (347)
T 3hfq_A 116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVI---D--LGSDKVYVYNVSDA--GQLSEQSVLTMEAGF 187 (347)
T ss_dssp CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEE---E--TTTTEEEEEEECTT--SCEEEEEEEECCTTC
T ss_pred CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEE---e--CCCCEEEEEEECCC--CcEEEeeeEEcCCCC
Confidence 642221 1222222 1367899999965 3321 1 22358999999731 2221 111221 22
Q ss_pred ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCc-eeeeec---CC----CCCeEEEEECcCCCEEEEEE
Q 013884 143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPL---RK----EGPVHDVQWSYSGSEFAVVY 214 (434)
Q Consensus 143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l---~~----~~~i~~~~wspdg~~~av~~ 214 (434)
....+.|+|+|++|++... .+.. ..+|.++...+. .....+ .. ...+..++|+|||+++++ +
T Consensus 188 ~p~~~~~spdg~~l~v~~~--~~~~-------v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v-~ 257 (347)
T 3hfq_A 188 GPRHLVFSPDGQYAFLAGE--LSSQ-------IASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYV-S 257 (347)
T ss_dssp CEEEEEECTTSSEEEEEET--TTTE-------EEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEE-E
T ss_pred CCceEEECCCCCEEEEEeC--CCCE-------EEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEE-E
Confidence 4567899999998766422 1111 123333321111 111111 11 135789999999998876 3
Q ss_pred ccCCCeEEEEeccc----eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEE--EccCCEEE
Q 013884 215 GFMPASATIFNKKC----RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW--DYVDGKQL 274 (434)
Q Consensus 215 g~~~~~i~l~d~~~----~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iw--d~~~~~~i 274 (434)
+..++.|.+||+.. ..+..+ +......++|+|||++|++++.++ +.|.+| |.++++..
T Consensus 258 ~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~--~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 258 NRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNT--DNATLYARDLTSGKLS 323 (347)
T ss_dssp EETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTT--TEEEEEEECTTTCCEE
T ss_pred eCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCC--CcEEEEEEeCCCCeEE
Confidence 55578999999852 223333 344578999999999999988653 689999 55566544
No 155
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.80 E-value=3.2e-17 Score=155.52 Aligned_cols=260 Identities=9% Similarity=0.047 Sum_probs=162.4
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcC--CCcE--EEEEeecCcCCCCCCeeeecCCCcEEEEec--CCeEEEE
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTE--TGEA--VYQLFQKNMTKTTWPSIRFSSDEAVACRMA--TNEIQFF 75 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~--~g~~--~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--~~~i~v~ 75 (434)
+.+++|||+|++|++.+. .++.|.+|++. +++. +..+... .....++|+||+++|+.+. ++.|.+|
T Consensus 40 ~~~~~~spdg~~l~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~~~i~~~ 111 (343)
T 1ri6_A 40 VQPMVVSPDKRYLYVGVR----PEFRVLAYRIAPDDGALTFAAESALP----GSLTHISTDHQGQFVFVGSYNAGNVSVT 111 (343)
T ss_dssp CCCEEECTTSSEEEEEET----TTTEEEEEEECTTTCCEEEEEEEECS----SCCSEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CceEEECCCCCEEEEeec----CCCeEEEEEecCCCCceeeccccccC----CCCcEEEEcCCCCEEEEEecCCCeEEEE
Confidence 568999999999998882 23899999997 6653 3344332 2445899999999876653 5789999
Q ss_pred eCCCCCCcee-eeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee-----eeee-cccceeEE
Q 013884 76 DTTDFPKGIL-YRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA-----RRSF-FRCSTVQL 147 (434)
Q Consensus 76 ~~~~~~~~~~-~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~-----~~~~-~~~~~~~~ 147 (434)
++.+...... ..+. ...+..++|+|++ ..+.+.. ...+.|.+|++... ..+. .... .......+
T Consensus 112 d~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~----~~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~ 183 (343)
T 1ri6_A 112 RLEDGLPVGVVDVVEGLDGCHSANISPDN-RTLWVPA----LKQDRICLFTVSDD---GHLVAQDPAEVTTVEGAGPRHM 183 (343)
T ss_dssp EEETTEEEEEEEEECCCTTBCCCEECTTS-SEEEEEE----GGGTEEEEEEECTT---SCEEEEEEEEEECSTTCCEEEE
T ss_pred ECCCCccccccccccCCCCceEEEECCCC-CEEEEec----CCCCEEEEEEecCC---CceeeecccccccCCCCCcceE
Confidence 9852211111 1121 3357889999984 4443322 13468999999752 2222 1222 22355679
Q ss_pred EECCCCCeEEEEEEecccccCceeecceeEEEEeeC--CCc-e--eeee-cCC----CCCeEEEEECcCCCEEEEEEccC
Q 013884 148 NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD--GTH-E--GLVP-LRK----EGPVHDVQWSYSGSEFAVVYGFM 217 (434)
Q Consensus 148 ~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~--~~~-~--~~v~-l~~----~~~i~~~~wspdg~~~av~~g~~ 217 (434)
.|+|+|+++++... .+. .+..++.. ... . ..+. +.. ...+..++|+|+|+.+++ ++..
T Consensus 184 ~~~pdg~~l~~~~~--~~~---------~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v-~~~~ 251 (343)
T 1ri6_A 184 VFHPNEQYAYCVNE--LNS---------SVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYA-CDRT 251 (343)
T ss_dssp EECTTSSEEEEEET--TTT---------EEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEE-EETT
T ss_pred EECCCCCEEEEEeC--CCC---------EEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEE-EecC
Confidence 99999998766421 111 12333332 111 0 0111 111 235668999999998876 4556
Q ss_pred CCeEEEEecc--c---eeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc--cCC--EEEEEeeC-CCceEEE
Q 013884 218 PASATIFNKK--C---RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY--VDG--KQLGTTRA-ECSVTSE 286 (434)
Q Consensus 218 ~~~i~l~d~~--~---~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~--~~~--~~i~~~~~-~~~~~~~ 286 (434)
++.+.+||++ . ..+..+ ....+..++|+|+|++|++++.+ ++.|.+|++ +++ +.+..+.. ..+..++
T Consensus 252 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~ 329 (343)
T 1ri6_A 252 ASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQK--SHHISVYEIVGEQGLLHEKGRYAVGQGPMWVV 329 (343)
T ss_dssp TTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTT--TCEEEEEEEETTTTEEEEEEEEECSSSCCEEE
T ss_pred CCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCC--CCeEEEEEEcCCCceeeEccccccCCCCeeEE
Confidence 8899999986 2 223333 23447899999999999888743 379999954 466 34444444 3566677
Q ss_pred ECCCC
Q 013884 287 WSPDG 291 (434)
Q Consensus 287 wspdg 291 (434)
|.|+-
T Consensus 330 ~~~~~ 334 (343)
T 1ri6_A 330 VNAHE 334 (343)
T ss_dssp EEEEC
T ss_pred EEccc
Confidence 77754
No 156
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.80 E-value=1.9e-17 Score=156.61 Aligned_cols=204 Identities=17% Similarity=0.174 Sum_probs=144.8
Q ss_pred eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC-CCceeeeeecccceeEEEECC--CCCeEEEEEEe
Q 013884 86 YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ-SQPLARRSFFRCSTVQLNWNR--GSTGLLAVAQS 162 (434)
Q Consensus 86 ~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~-~~~i~~~~~~~~~~~~~~ws~--~G~~l~~~~~~ 162 (434)
...|...|.+++|+|+ +..+++ .+.++.|++|++..... ...+.....+...+.++.|+| +|..|+...
T Consensus 7 ~~gH~~~v~~~~~~~~-~~~l~~-----~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~-- 78 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFY-GRHVAT-----CSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASAS-- 78 (351)
T ss_dssp ECCCSSCEEEEEECSS-SSEEEE-----EETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEE--
T ss_pred CcccccceeEEEEcCC-CCEEEE-----eeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEc--
Confidence 3456778999999998 455553 24567999999986311 134555667888999999999 588765432
Q ss_pred cccccCceeecceeEEEEeeCCCc------eeeee-cCCCCCeEEEEECcC--CCEEEEEEccCCCeEEEEecccee-EE
Q 013884 163 DVDKTNQSYYGESKLNYLTTDGTH------EGLVP-LRKEGPVHDVQWSYS--GSEFAVVYGFMPASATIFNKKCRP-IL 232 (434)
Q Consensus 163 ~~d~~~~~~~g~~~l~~l~~~~~~------~~~v~-l~~~~~i~~~~wspd--g~~~av~~g~~~~~i~l~d~~~~~-~~ 232 (434)
.|...+ +|.+...... ..... ..+.++|.+++|+|+ ++.|+ ++..++.|.+||++... +.
T Consensus 79 -~dg~v~-------vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~--~~~~dg~v~iwd~~~~~~~~ 148 (351)
T 3f3f_A 79 -YDKTVK-------LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLA--CLGNDGILRLYDALEPSDLR 148 (351)
T ss_dssp -TTSCEE-------EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEE--EEETTCEEEEEECSSTTCTT
T ss_pred -CCCeEE-------EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEE--EecCCCcEEEecCCChHHhc
Confidence 343333 3333221100 11222 235789999999999 88888 56778999999985321 10
Q ss_pred ---------E------cCCcCeeEEEECCC---CCeEEEEecCCCCCeEEEEEccCCEE--EEEeeCC--CceEEEECCC
Q 013884 233 ---------E------LGSGPYNTVRWNPK---GKFLCLAGFGNLPGDMAFWDYVDGKQ--LGTTRAE--CSVTSEWSPD 290 (434)
Q Consensus 233 ---------~------~~~~~~~~i~~sP~---g~~l~~~~~~~~~g~i~iwd~~~~~~--i~~~~~~--~~~~~~wspd 290 (434)
. .+...+.++.|+|+ +.+|++++ .++.+.+|+...++. +..+.+| .+..++|+|+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~ 225 (351)
T 3f3f_A 149 SWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSA---LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPS 225 (351)
T ss_dssp CCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEE---TTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCC
T ss_pred cccccccccccccccCCcccceeEEEeccCCCCCcEEEEec---CCCcEEEEccCCCceeeeeecCCCCcceeEEEECCC
Confidence 0 24667899999998 89999998 556888888777653 6666655 5667999999
Q ss_pred C----CEEEEEEcCCceeeCCcEEEEeecC
Q 013884 291 G----RYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 291 g----~~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
| ++|++++. |+.|+|||+..
T Consensus 226 ~~~~~~~l~s~~~------dg~i~iwd~~~ 249 (351)
T 3f3f_A 226 IGRWYQLIATGCK------DGRIRIFKITE 249 (351)
T ss_dssp SSCSSEEEEEEET------TSCEEEEEEEE
T ss_pred CCCcceEEEEEcC------CCeEEEEeCCC
Confidence 9 89999999 99999999965
No 157
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.79 E-value=6.6e-18 Score=178.67 Aligned_cols=227 Identities=15% Similarity=0.207 Sum_probs=165.6
Q ss_pred eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC--CCeEEEEEEec
Q 013884 86 YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG--STGLLAVAQSD 163 (434)
Q Consensus 86 ~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~--G~~l~~~~~~~ 163 (434)
...|...|.+++|+|++ ..+++ ++.++.|++|++.... ...+.....|...+.++.|+++ |+.|+...
T Consensus 5 l~gH~~~V~~l~~s~dg-~~lat-----g~~dg~I~vwd~~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s--- 74 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYG-KRLAT-----CSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGTILASCS--- 74 (753)
T ss_dssp ---CCCCEEEECCCSSS-CCEEE-----EETTTEEEEEEEETTE-EEEEEEECCCSSCEEEEEECCTTSCSEEEEEE---
T ss_pred cccCcceeEEEEECCCC-CeEEE-----EECCCcEEEEecCCCC-CccceeccCCcCceEEEEecCCCCCCEEEEEe---
Confidence 34566789999999985 44443 2456899999997421 4566677778889999999988 88765432
Q ss_pred ccccCceeecceeEEEEeeCCCc--eeeeecCCCCCeEEEEECcC--CCEEEEEEccCCCeEEEEeccce---eE--EEc
Q 013884 164 VDKTNQSYYGESKLNYLTTDGTH--EGLVPLRKEGPVHDVQWSYS--GSEFAVVYGFMPASATIFNKKCR---PI--LEL 234 (434)
Q Consensus 164 ~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l~~~~~i~~~~wspd--g~~~av~~g~~~~~i~l~d~~~~---~~--~~~ 234 (434)
.|...+ +|.+. ... .......+.++|.+++|+|+ ++.|+ +|..++.|.+||++.. .. ...
T Consensus 75 ~Dg~I~-------vwd~~--~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~--sgs~dg~I~vwdl~~~~~~~~~~~~~ 143 (753)
T 3jro_A 75 YDGKVL-------IWKEE--NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLL--VASSDGKVSVVEFKENGTTSPIIIDA 143 (753)
T ss_dssp TTSCEE-------EEEEE--TTEEEEEEEECCCSSCEEEEEECCGGGCSEEE--EEETTSEEEEEECCSSSCCCCEEEEC
T ss_pred CCCeEE-------EEECC--CCcccccccccCCCCCeEEEEECCCCCCCEEE--EEeCCCcEEEEEeecCCCcceeEeec
Confidence 344433 33332 221 11222335789999999999 88888 5778999999998643 22 233
Q ss_pred CCcCeeEEEECC-------------CCCeEEEEecCCCCCeEEEEEccCC----EEEEEeeCC--CceEEEECCC---CC
Q 013884 235 GSGPYNTVRWNP-------------KGKFLCLAGFGNLPGDMAFWDYVDG----KQLGTTRAE--CSVTSEWSPD---GR 292 (434)
Q Consensus 235 ~~~~~~~i~~sP-------------~g~~l~~~~~~~~~g~i~iwd~~~~----~~i~~~~~~--~~~~~~wspd---g~ 292 (434)
+...+.++.|+| +|++|++++ .+|.|++||+.++ ..+..+.+| .+..++|+|+ |+
T Consensus 144 ~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs---~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~ 220 (753)
T 3jro_A 144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG---ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220 (753)
T ss_dssp CSSCEEEEEECCCC---------CGGGCCEEEEE---TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred CCCceEEEEecCcccccccccccCCCCCEEEEEE---CCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC
Confidence 788999999999 589999998 5679999999876 556666665 5667999999 99
Q ss_pred EEEEEEcCCceeeCCcEEEEeecCc------eeee--eecccceeeEEEcCCCCCCCC
Q 013884 293 YFMTATTAPRLQIDNGIKIFHHNGS------LFFK--KMFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 293 ~l~tas~~~rl~~D~~i~iw~~~g~------~~~~--~~~~~~~~~~w~p~~~~~~~~ 342 (434)
+|++++. |+.|+|||+... .+.. .+...+..+.|.|++..++..
T Consensus 221 ~l~s~s~------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~ 272 (753)
T 3jro_A 221 YLASVSQ------DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS 272 (753)
T ss_dssp EEEEEES------SSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEE
T ss_pred EEEEEec------CCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEE
Confidence 9999999 999999999653 2221 144578999999998887765
No 158
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.79 E-value=1.7e-18 Score=169.15 Aligned_cols=212 Identities=10% Similarity=0.017 Sum_probs=127.2
Q ss_pred cceEEecC--------CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCc-EEEEe-cCCe
Q 013884 2 LLLLTCLR--------VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEA-VACRM-ATNE 71 (434)
Q Consensus 2 V~~l~fSP--------~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~-~la~~-~~~~ 71 (434)
|++|+||| ||++|+|++ .|++|+|||+.++.++..+..+. ..+.+++|+|++. +|+++ .|++
T Consensus 139 v~~v~~~p~~~~~~~~d~~~las~s-----~D~tv~~Wd~~~~~~~~~~~~~~---~~v~~v~~~p~~~~~l~~~~~d~~ 210 (393)
T 4gq1_A 139 VNDIDIADVYSADNRLAEQVIASVG-----DDCTLIIWRLTDEGPILAGYPLS---SPGISVQFRPSNPNQLIVGERNGN 210 (393)
T ss_dssp EEEEEEEEEECTTCSEEEEEEEEEE-----TTSEEEEEEEETTEEEEEEEECS---SCEEEEEEETTEEEEEEEEETTSE
T ss_pred eEEEEEccccccccCCCCCEEEEEE-----CCCeEEEEECCCCceeeeecCCC---CCcEEEEECCCCCceEEecCCCCE
Confidence 78999998 899999999 89999999999888777666543 5566999999875 67777 5679
Q ss_pred EEEEeCCCCCCcee-------------------------eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884 72 IQFFDTTDFPKGIL-------------------------YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 72 i~v~~~~~~~~~~~-------------------------~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
|++||+........ ...+...+..+.|++..+..++. ...++.+++|++.
T Consensus 211 v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s-----~s~d~~i~vwd~~ 285 (393)
T 4gq1_A 211 IRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILA-----MCKSGAWLRWNLF 285 (393)
T ss_dssp EEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEE-----ECTTSEEEEEEC-
T ss_pred EEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEE-----EeCCCCEEEEECc
Confidence 99999865432110 01122346667776322444432 2456789999986
Q ss_pred CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcC
Q 013884 127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS 206 (434)
Q Consensus 127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspd 206 (434)
. .........+......+.+.+++.. + ..........|+|.
T Consensus 286 ~---~~~~~~l~~~~~~~~~~~~~~~~~~------------------------~------------~~~~~~~~~~~~~~ 326 (393)
T 4gq1_A 286 A---NNDYNEISDSTMKLGPKNLLPNVQG------------------------I------------SLFPSLLGACPHPR 326 (393)
T ss_dssp ---------------------CCSCSEEE------------------------E------------CSSCCSSCCEECSS
T ss_pred c---CCCCceEeeecCccccEEEcccccc------------------------c------------cccCcceeEEEccC
Confidence 5 3332222222222222222222111 0 00112223445554
Q ss_pred CCEEEEEEccCCCeEEEEeccc-eeEE--EcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013884 207 GSEFAVVYGFMPASATIFNKKC-RPIL--ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV 269 (434)
Q Consensus 207 g~~~av~~g~~~~~i~l~d~~~-~~~~--~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~ 269 (434)
...+.+++|..|+.|+|||... ..+. ..+..+|++++|||||++||+++.+ .+.+|.+.
T Consensus 327 ~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~----Gv~lvrL~ 388 (393)
T 4gq1_A 327 YMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEG----SVLLTRLM 388 (393)
T ss_dssp CTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESS----EEEEEEEG
T ss_pred CCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCC----CeEEEEEe
Confidence 3333334788899999999863 3332 2377899999999999999999733 47777653
No 159
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.78 E-value=2.8e-17 Score=154.24 Aligned_cols=215 Identities=11% Similarity=0.041 Sum_probs=130.2
Q ss_pred cceEEecCC----CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeC
Q 013884 2 LLLLTCLRV----GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDT 77 (434)
Q Consensus 2 V~~l~fSP~----g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~ 77 (434)
|++|+|||| +.+|++.+ ..+.||++.+|+.+.+.... |...+..++++|||+.++.
T Consensus 114 v~sla~spd~~~~~~~l~s~g-------~~~~v~~l~~g~lv~ss~~g--~d~~V~~~~~s~dG~~~~s----------- 173 (356)
T 2w18_A 114 IRALFCSSDDESEKQVLLKSG-------NIKAVLGLTKRRLVSSSGTL--SDQQVEVMTFAEDGGGKEN----------- 173 (356)
T ss_dssp EEEECC------CCEEEEEEE-------EEEEEEEETTTEEEEEESSS--TTCEEEEEEECTTSCEEEE-----------
T ss_pred eEEEEECCCccccccEEEeCC-------CeEEEEecCCCcEEEecccC--CCCcEEEEEECCCCceeee-----------
Confidence 678889999 88888865 45778888777766653211 1144445566666665542
Q ss_pred CCCCCceeeeeecCCeeEEEEeC--CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc---cceeEEEECCC
Q 013884 78 TDFPKGILYRLRVPGVAAFEVSK--APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR---CSTVQLNWNRG 152 (434)
Q Consensus 78 ~~~~~~~~~~~~~~~v~~~~~sp--~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~---~~~~~~~ws~~ 152 (434)
..++...+..++||| +.+..++ +++.+++|+||++.+ ++.+.++..+. ..++.+.|+|+
T Consensus 174 --------~~~~~~~v~~l~fs~~~g~~~~La-----SgS~D~TIkIWDl~T---Gk~l~tL~g~~~~v~~v~~vafSpd 237 (356)
T 2w18_A 174 --------QFLMPPEETILTFAEVQGMQEALL-----GTTIMNNIVIWNLKT---GQLLKKMHIDDSYQASVCHKAYSEM 237 (356)
T ss_dssp --------EEECCCSSCEEEEEEEETSTTEEE-----EEETTSEEEEEETTT---CCEEEEEECCC---CCCEEEEEEET
T ss_pred --------eccCCCceeeEEeeccCCCCceEE-----EecCCCcEEEEECCC---CcEEEEEcCCCcceeeeEEEEECCC
Confidence 335556677777777 2245555 345678999999988 77777776432 34567789999
Q ss_pred CCeEEEEE---------EecccccCceeecceeEEEEeeCCCceeee-----ecCCCCCeEEEEECcCCCEEEEEEccCC
Q 013884 153 STGLLAVA---------QSDVDKTNQSYYGESKLNYLTTDGTHEGLV-----PLRKEGPVHDVQWSYSGSEFAVVYGFMP 218 (434)
Q Consensus 153 G~~l~~~~---------~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-----~l~~~~~i~~~~wspdg~~~av~~g~~~ 218 (434)
|..++... +...|.+.+ .++...+....+ +-.+.+.+.+..++ +..++ +++.|
T Consensus 238 G~~lvs~s~~~~~w~laSGs~D~tIk---------lWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lA--SgS~D 304 (356)
T 2w18_A 238 GLLFIVLSHPCAKESESLRSPVFQLI---------VINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAA--AILTS 304 (356)
T ss_dssp TEEEEEEC------------CCEEEE---------EEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEE--EEETT
T ss_pred CCEEEEeccCCCcceeeccCCCcEEE---------EEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEE--EEcCC
Confidence 98775532 222233333 223222211111 01122223333332 44555 68889
Q ss_pred CeEEEEecc-ceeEEEc--CCcCee-EEEECCCCCeEEEEecCCCCCeEEEEEc
Q 013884 219 ASATIFNKK-CRPILEL--GSGPYN-TVRWNPKGKFLCLAGFGNLPGDMAFWDY 268 (434)
Q Consensus 219 ~~i~l~d~~-~~~~~~~--~~~~~~-~i~~sP~g~~l~~~~~~~~~g~i~iwd~ 268 (434)
++|+|||++ ++.+.++ |...+. .++|||||++|++|+ .|++|+|||.
T Consensus 305 gTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS---~D~TIklWd~ 355 (356)
T 2w18_A 305 GTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQ---KDGNIFVYHY 355 (356)
T ss_dssp SCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEEC---TTSCEEEEEE
T ss_pred CcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEE---CCCcEEEecC
Confidence 999999996 4556666 444444 689999999999998 5579999995
No 160
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.78 E-value=2.1e-16 Score=166.95 Aligned_cols=291 Identities=10% Similarity=0.059 Sum_probs=171.1
Q ss_pred eEEecCCCcEEEEEecCCC----CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCC
Q 013884 4 LLTCLRVGLIIQTFQKSST----PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD 79 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~----~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~ 79 (434)
.++|||||++|+..+.... ...+.+.|||+.+|+... +..+. ..+..+.|||||+.||++.++.|.+|+...
T Consensus 66 ~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~---~~~~~~~~SPdG~~la~~~~~~i~~~~~~~ 141 (740)
T 4a5s_A 66 DYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIP---NNTQWVTWSPVGHKLAYVWNNDIYVKIEPN 141 (740)
T ss_dssp EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCC---TTEEEEEECSSTTCEEEEETTEEEEESSTT
T ss_pred ceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCC---CcceeeEECCCCCEEEEEECCeEEEEECCC
Confidence 3789999999998772100 112678899999997543 32221 345589999999999999999999999876
Q ss_pred CCCceeeeeec---------------------CCeeEEEEeCCCCCeEEEEecCCC------------------------
Q 013884 80 FPKGILYRLRV---------------------PGVAAFEVSKAPGSHVAVFVPESK------------------------ 114 (434)
Q Consensus 80 ~~~~~~~~~~~---------------------~~v~~~~~sp~~~~~ia~~~~~~~------------------------ 114 (434)
... .++.. .....+.|||| +..|++...+..
T Consensus 142 ~~~---~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpD-g~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~ 217 (740)
T 4a5s_A 142 LPS---YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPN-GTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVP 217 (740)
T ss_dssp SCC---EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTT-SSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEE
T ss_pred Cce---EEEcCCCCccceecCcccccccchhcCCCcceEECCC-CCEEEEEEEcccCCceEEEEeecCCCCCCCcceeec
Confidence 442 12211 11235899999 566665421111
Q ss_pred -------CCCceEEEEEcCC---CCCCCceeeeee------cccceeEEEECCCCCeEEEEEEecccccCceeecceeEE
Q 013884 115 -------GSPASVQIYACGK---DLQSQPLARRSF------FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLN 178 (434)
Q Consensus 115 -------~~~~~v~i~~~~~---~~~~~~i~~~~~------~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~ 178 (434)
.....+.+|++.+ .. ......+.. +...+..+.|+|||+.++....... ....|+
T Consensus 218 yp~~G~~~~~~~l~v~d~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~--------~~~~i~ 288 (740)
T 4a5s_A 218 YPKAGAVNPTVKFFVVNTDSLSSVT-NATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQ--------NYSVMD 288 (740)
T ss_dssp CCBTTSCCCEEEEEEEETTSCCSSS-CCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESST--------TEEEEE
T ss_pred CCCCcCcCCeeEEEEEECCCCCCCC-cceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCC--------CEEEEE
Confidence 1112677888865 21 002222222 3445678899999996554332211 122466
Q ss_pred EEeeCCCce---ee----e-ecCCCCCe-----EEEEECcCCCEEEEEEccCCC--eEEEEeccceeEEEcCC--cCeeE
Q 013884 179 YLTTDGTHE---GL----V-PLRKEGPV-----HDVQWSYSGSEFAVVYGFMPA--SATIFNKKCRPILELGS--GPYNT 241 (434)
Q Consensus 179 ~l~~~~~~~---~~----v-~l~~~~~i-----~~~~wspdg~~~av~~g~~~~--~i~l~d~~~~~~~~~~~--~~~~~ 241 (434)
.+++.++.. +. + .-.+.+.| ..++|||||+.|++.....++ .|.+||..+.....+.. ..+..
T Consensus 289 ~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~ 368 (740)
T 4a5s_A 289 ICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIG 368 (740)
T ss_dssp EEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEE
T ss_pred EEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEE
Confidence 666655420 11 1 11123333 378999999998843444444 78888988766666633 33444
Q ss_pred EEECCCCCeEEEEecC--CCCC--eEEEEEccCCEEEEEeeC------CCceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013884 242 VRWNPKGKFLCLAGFG--NLPG--DMAFWDYVDGKQLGTTRA------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKI 311 (434)
Q Consensus 242 i~~sP~g~~l~~~~~~--~~~g--~i~iwd~~~~~~i~~~~~------~~~~~~~wspdg~~l~tas~~~rl~~D~~i~i 311 (434)
+. ++||+.|+..+.+ ...+ .|+..++..++....+.. .....+.|||||++++.....|. -..+.+
T Consensus 369 ~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~---~p~~~l 444 (740)
T 4a5s_A 369 IE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPG---LPLYTL 444 (740)
T ss_dssp EE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBS---SCEEEE
T ss_pred EE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCC---CCEEEE
Confidence 43 3557776665543 2233 455555554443323321 24456999999999988877543 234566
Q ss_pred Eeec
Q 013884 312 FHHN 315 (434)
Q Consensus 312 w~~~ 315 (434)
++..
T Consensus 445 ~~~~ 448 (740)
T 4a5s_A 445 HSSV 448 (740)
T ss_dssp EETT
T ss_pred EECC
Confidence 6654
No 161
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.77 E-value=7.8e-18 Score=172.79 Aligned_cols=255 Identities=13% Similarity=0.025 Sum_probs=161.1
Q ss_pred CCCeeeecCCCcEEEEec--CCeEEEEeCCCCCCceeeeee--c-CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEc
Q 013884 51 TWPSIRFSSDEAVACRMA--TNEIQFFDTTDFPKGILYRLR--V-PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYAC 125 (434)
Q Consensus 51 ~~~~~~~S~d~~~la~~~--~~~i~v~~~~~~~~~~~~~~~--~-~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~ 125 (434)
.+.+++|||||++||+++ +++++||++.... ..++. . ..+..+.|||+ .+++..... +.....+||.+
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~---~~~lt~~~~~~~~~~~~spd---~~l~~~~~~-~g~~~~~l~~~ 95 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE---TVKLNREPINSVLDPHYGVG---RVILVRDVS-KGAEQHALFKV 95 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEETTE---EEECCSSCCSEECEECTTCS---EEEEEEECS-TTSCCEEEEEE
T ss_pred chheeecCCCCCeEEEEEccCCceeEEEEcCCC---cEeeecccccccccccCCCC---eEEEEeccC-CCCcceEEEEE
Confidence 344899999999999874 6799999974422 22222 2 36888999987 344433321 12234556555
Q ss_pred CCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECc
Q 013884 126 GKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY 205 (434)
Q Consensus 126 ~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wsp 205 (434)
.....+... ...... ....+.|+|+|+.+++.... .+. ..|| ++.++....+.- ... .+++|||
T Consensus 96 ~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~-~~~--------~~l~--d~~~g~~~~l~~-~~~--~~~~~sp 159 (582)
T 3o4h_A 96 NTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGAT-EDR--------VALY--ALDGGGLRELAR-LPG--FGFVSDI 159 (582)
T ss_dssp ETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEEC-SSC--------EEEE--EEETTEEEEEEE-ESS--CEEEEEE
T ss_pred eccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecC-CCC--------ceEE--EccCCcEEEeec-CCC--ceEEECC
Confidence 330002222 222222 22356899999987665332 111 1144 333432222221 122 8999999
Q ss_pred CCCEEEEEEccCC--CeEEEEeccceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCC--eEEEEEccCCEEEEEeeC
Q 013884 206 SGSEFAVVYGFMP--ASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPG--DMAFWDYVDGKQLGTTRA 279 (434)
Q Consensus 206 dg~~~av~~g~~~--~~i~l~d~~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g--~i~iwd~~~~~~i~~~~~ 279 (434)
||+.++..+.... ..|.+||+.+.....+ +.+.++.++|||||++|+++. .+| +|++||+++++.. .+..
T Consensus 160 DG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~---~~~~~~i~~~d~~~~~~~-~~~~ 235 (582)
T 3o4h_A 160 RGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLE---TAREARLVTVDPRDGSVE-DLEL 235 (582)
T ss_dssp ETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEE---CSSCEEEEEECTTTCCEE-ECCC
T ss_pred CCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEcc---CCCeeEEEEEcCCCCcEE-EccC
Confidence 9999996443311 4789999876555554 456789999999999999554 345 8999999988776 5554
Q ss_pred C--CceEEE--------ECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeecccceeeEEEcCCCCCCC
Q 013884 280 E--CSVTSE--------WSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFG 341 (434)
Q Consensus 280 ~--~~~~~~--------wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~~~~~~~~~~w~p~~~~~~~ 341 (434)
+ .+..+. |||||..+++++. |+.++||++ |+++. .....+..+.|+ ++..++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~spdg~~~~~~~~------~g~~~l~~~-g~~~~-~~~~~v~~~~~s-dg~~l~~ 298 (582)
T 3o4h_A 236 PSKDFSSYRPTAITWLGYLPDGRLAVVARR------EGRSAVFID-GERVE-APQGNHGRVVLW-RGKLVTS 298 (582)
T ss_dssp SCSHHHHHCCSEEEEEEECTTSCEEEEEEE------TTEEEEEET-TEEEC-CCSSEEEEEEEE-TTEEEEE
T ss_pred CCcChhhhhhccccceeEcCCCcEEEEEEc------CCcEEEEEE-CCeec-cCCCceEEEEec-CCEEEEE
Confidence 4 222355 9999988888888 999999999 87654 223456677888 6554443
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.77 E-value=2.5e-16 Score=151.98 Aligned_cols=247 Identities=11% Similarity=0.005 Sum_probs=149.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcC-CCcEEEEEeecCcCCCCCCeeeecCCCcE--EEEec----------
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTE-TGEAVYQLFQKNMTKTTWPSIRFSSDEAV--ACRMA---------- 68 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~-~g~~~~~~~~~~~~~~~~~~~~~S~d~~~--la~~~---------- 68 (434)
+..++|||||++|++.+ .+ .|.+|++. +|+.+....... . .....+.|+|||++ ++.+.
T Consensus 42 ~~~~a~spdg~~l~~~~-----~~-~v~~~~~~~~g~~~~~~~~~~-~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~ 113 (365)
T 1jof_A 42 ISWMTFDHERKNIYGAA-----MK-KWSSFAVKSPTEIVHEASHPI-G-GHPRANDADTNTRAIFLLAAKQPPYAVYANP 113 (365)
T ss_dssp CSEEEECTTSSEEEEEE-----BT-EEEEEEEEETTEEEEEEEEEC-C-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEE
T ss_pred CcEEEECCCCCEEEEEc-----cc-eEEEEEECCCCCEEEeeEeec-C-CCCccEEECCCCCEEEEEEecCCcceeccce
Confidence 45799999999999887 45 89999997 887654333211 0 12336899999995 33332
Q ss_pred ----CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccce
Q 013884 69 ----TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCST 144 (434)
Q Consensus 69 ----~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~ 144 (434)
++++.+|++....... . .+.++.. ......
T Consensus 114 ~~~~~g~v~v~~~~~~g~~~-~--------------------------------~~~~~~~-------------~~~~~~ 147 (365)
T 1jof_A 114 FYKFAGYGNVFSVSETGKLE-K--------------------------------NVQNYEY-------------QENTGI 147 (365)
T ss_dssp ESSSCCEEEEEEECTTCCEE-E--------------------------------EEEEEEC-------------CTTCCE
T ss_pred eecCCceEEEEccCCCCcCc-c--------------------------------eEeeEEe-------------CCCCcc
Confidence 3345555543211000 0 0000000 012234
Q ss_pred eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeC-CCcee---eeecC-CCCCeEEEEECcCCCEEEEEEccCCC
Q 013884 145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD-GTHEG---LVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPA 219 (434)
Q Consensus 145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~-~~~~~---~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~ 219 (434)
..+.|+|+|++|++. +. +...++.++.. .+... .+.+. +...+..++|+|||+++++. +..++
T Consensus 148 ~~~~~spdG~~l~~~-~~----------~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~-~~~~~ 215 (365)
T 1jof_A 148 HGMVFDPTETYLYSA-DL----------TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYAL-MEAGN 215 (365)
T ss_dssp EEEEECTTSSEEEEE-ET----------TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEE-ETTTT
T ss_pred eEEEECCCCCEEEEE-cC----------CCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEE-ECCCC
Confidence 578899999876543 11 11124444443 22111 12222 24568899999999988764 55567
Q ss_pred eEEEEecc---ceeE------EEcCC-----c-------CeeEEE-ECCCCCeEEEEecCCC---CCeEEEEEcc-CCEE
Q 013884 220 SATIFNKK---CRPI------LELGS-----G-------PYNTVR-WNPKGKFLCLAGFGNL---PGDMAFWDYV-DGKQ 273 (434)
Q Consensus 220 ~i~l~d~~---~~~~------~~~~~-----~-------~~~~i~-~sP~g~~l~~~~~~~~---~g~i~iwd~~-~~~~ 273 (434)
.+.+|+.+ +... ..+.. . ....++ |||||++|+++..+.. .+.|.+|+++ +++.
T Consensus 216 ~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~ 295 (365)
T 1jof_A 216 RICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI 295 (365)
T ss_dssp EEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE
T ss_pred eEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCE
Confidence 99998753 2221 12221 1 367899 9999999987764321 2489999986 5654
Q ss_pred EE---EeeC--CCceEEEECC---CCCEEEEEEcCCceeeCCcEEEEeecCcee
Q 013884 274 LG---TTRA--ECSVTSEWSP---DGRYFMTATTAPRLQIDNGIKIFHHNGSLF 319 (434)
Q Consensus 274 i~---~~~~--~~~~~~~wsp---dg~~l~tas~~~rl~~D~~i~iw~~~g~~~ 319 (434)
.. .... .....++|+| ||++|+++... ++.|+||++++..+
T Consensus 296 ~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~-----~~~v~v~~~~~~~l 344 (365)
T 1jof_A 296 EKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ-----EGWLEIYRWKDEFL 344 (365)
T ss_dssp EEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS-----SCEEEEEEEETTEE
T ss_pred EEeeeeeecCCCCcccceecCCCcCCCEEEEEEcC-----CCeEEEEEEchhhC
Confidence 32 2322 2455689999 89999999873 58999999987744
No 163
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.75 E-value=6.5e-17 Score=156.78 Aligned_cols=290 Identities=8% Similarity=-0.037 Sum_probs=168.8
Q ss_pred EEEcCCCcEEEEEeecCc--CCCCCCeeeecCCCcEEEEecC----CeEEEEeCCCCCCceeeeeec--CCee-EEEEeC
Q 013884 30 LWKTETGEAVYQLFQKNM--TKTTWPSIRFSSDEAVACRMAT----NEIQFFDTTDFPKGILYRLRV--PGVA-AFEVSK 100 (434)
Q Consensus 30 iWd~~~g~~~~~~~~~~~--~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~~~~~~~~~~~~~~--~~v~-~~~~sp 100 (434)
..|..+|+.+..+..... +...+..++|||||++|++..+ ..|.+|+..... ...+.. .... .+.|||
T Consensus 14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~---~~~l~~~~~~~~~~~~~sp 90 (396)
T 3c5m_A 14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ---AVQLTEGKGDNTFGGFIST 90 (396)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE---EEECCCSSCBCTTTCEECT
T ss_pred eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCc---EEEeecCCCCccccceECC
Confidence 447888988777754321 0112557899999999888743 278888987633 222221 1222 378999
Q ss_pred CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeE-------------------EEECCCCCeEEEEEE
Q 013884 101 APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQ-------------------LNWNRGSTGLLAVAQ 161 (434)
Q Consensus 101 ~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~-------------------~~ws~~G~~l~~~~~ 161 (434)
+ +..|++.... ..+.+|++.. +...........-... ..|+|+|+.+++...
T Consensus 91 d-g~~l~~~~~~-----~~l~~~d~~~---~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~ 161 (396)
T 3c5m_A 91 D-ERAFFYVKNE-----LNLMKVDLET---LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEF 161 (396)
T ss_dssp T-SSEEEEEETT-----TEEEEEETTT---CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHH
T ss_pred C-CCEEEEEEcC-----CcEEEEECCC---CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeee
Confidence 9 4555543322 3688898866 3332222211110000 123444443322100
Q ss_pred ecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECc-CCCEEEEEEccCC----CeEEEEeccceeEEEcCC
Q 013884 162 SDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMP----ASATIFNKKCRPILELGS 236 (434)
Q Consensus 162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wsp-dg~~~av~~g~~~----~~i~l~d~~~~~~~~~~~ 236 (434)
. . . .....|+.+++.++....+. .....+..+.|+| +|+.+++++.... ..|.+||+.+.....+..
T Consensus 162 ~---~-~---~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 233 (396)
T 3c5m_A 162 Y---H-T---NPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE 233 (396)
T ss_dssp H---H-T---CCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC
T ss_pred c---c-C---CCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec
Confidence 0 0 0 12345788877665333332 3356789999999 8988887654322 478889987655444422
Q ss_pred ----cCeeEEEECCCCCeEEEEecCCCC--CeEEEEEccCCEEEEEeeCCCceEEEECC-CCCEEEEEEcCCce------
Q 013884 237 ----GPYNTVRWNPKGKFLCLAGFGNLP--GDMAFWDYVDGKQLGTTRAECSVTSEWSP-DGRYFMTATTAPRL------ 303 (434)
Q Consensus 237 ----~~~~~i~~sP~g~~l~~~~~~~~~--g~i~iwd~~~~~~i~~~~~~~~~~~~wsp-dg~~l~tas~~~rl------ 303 (434)
..+..+.|||||++|+.++.+... +.|++||+.+++........... +.|+| ||++|++++.. ..
T Consensus 234 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~-~~~s~~dg~~l~~~~~~-~p~~~~~~ 311 (396)
T 3c5m_A 234 HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCS-HLMSNFDGSLMVGDGCD-APVDVADA 311 (396)
T ss_dssp CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEE-EEEECSSSSEEEEEECC-C-------
T ss_pred cCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCC-CCccCCCCceEEEecCC-cceeeccc
Confidence 246778999999988877643222 34999999888544333333333 89999 99988876531 10
Q ss_pred -----eeCCcEEEEeecCceeeeeec--c-----------cceeeEEEcCCCCCCC
Q 013884 304 -----QIDNGIKIFHHNGSLFFKKMF--D-----------KLFQAEWKPVSPDKFG 341 (434)
Q Consensus 304 -----~~D~~i~iw~~~g~~~~~~~~--~-----------~~~~~~w~p~~~~~~~ 341 (434)
.-+..|.+||..+..+..... . ....+.|.|++..++.
T Consensus 312 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 367 (396)
T 3c5m_A 312 DSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLF 367 (396)
T ss_dssp ---CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEE
T ss_pred cccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEE
Confidence 114679999986554332211 1 1455788888766543
No 164
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.73 E-value=1.1e-14 Score=139.73 Aligned_cols=261 Identities=9% Similarity=0.050 Sum_probs=152.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC--CcE--EEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEE
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET--GEA--VYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFF 75 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~--g~~--~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~ 75 (434)
+..|+|||||++|++.+... ..++.|.+|++.. |+. +....... .....+.+ |+++|+.+ .++.|.+|
T Consensus 52 p~~l~~spdg~~l~~~~~~~-~~~~~v~~~~~~~~~g~~~~~~~~~~~~---~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 52 PSYLIPSADGKFVYSVNEFS-KDQAAVSAFAFDKEKGTLHLLNTQKTMG---ADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp CCSEEECTTSSEEEEEECCS-STTCEEEEEEEETTTTEEEEEEEEECSS---SCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred CceEEECCCCCEEEEEEccC-CCCCcEEEEEEeCCCCcEEEeeEeccCC---CCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 35789999999999988321 1237899998865 543 22322221 22224555 88877766 35799999
Q ss_pred eCCCCCCceee--eee------------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC----Ccee--
Q 013884 76 DTTDFPKGILY--RLR------------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS----QPLA-- 135 (434)
Q Consensus 76 ~~~~~~~~~~~--~~~------------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~----~~i~-- 135 (434)
++......... ... ...+..+.|+|++ ..+.+.. ...+.|.+|++.... . +.+.
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg-~~l~~~~----~~~~~v~v~~~~~~~-~~~~~~~l~~~ 199 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG-KYLLADD----LGTDQIHKFNINPNA-NADNKEKFLTK 199 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS-SEEEEEE----TTTTEEEEEEECTTC-CTTTCCCCEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC-CEEEEEe----CCCCEEEEEEEcCCC-Ccccccceeec
Confidence 98653221111 111 1234679999984 4333221 234589999987531 1 1011
Q ss_pred ----e-eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCce-eeeec---C-CCCCeEEEEECc
Q 013884 136 ----R-RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPL---R-KEGPVHDVQWSY 205 (434)
Q Consensus 136 ----~-~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v~l---~-~~~~i~~~~wsp 205 (434)
. ..........+.|+|+|++|++... .+.. ++.++...+.. ....+ . ......+++|+|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~--~~~~---------v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp 268 (361)
T 3scy_A 200 GTPEAFKVAPGSGPRHLIFNSDGKFAYLINE--IGGT---------VIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP 268 (361)
T ss_dssp EEEEEEECCTTCCEEEEEECTTSSEEEEEET--TTCE---------EEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT
T ss_pred ccccceecCCCCCCeEEEEcCCCCEEEEEcC--CCCe---------EEEEEecCCceEEeEEEecCCCCCCCcccEEECC
Confidence 1 1122344568999999998766421 1211 23333222211 11111 1 123467999999
Q ss_pred CCCEEEEEEccC-CCeEEEEecc---ce--eEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEE--EccCCEEEEE
Q 013884 206 SGSEFAVVYGFM-PASATIFNKK---CR--PILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW--DYVDGKQLGT 276 (434)
Q Consensus 206 dg~~~av~~g~~-~~~i~l~d~~---~~--~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iw--d~~~~~~i~~ 276 (434)
||+++++ +... ++.+.+|++. +. .+..+ .......++|+|||++|++++.++ +.|.+| |.++++....
T Consensus 269 dg~~l~v-~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~--~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 269 DGKYLYA-SNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDT--NVIQIFERDQATGLLTDI 345 (361)
T ss_dssp TSSEEEE-EECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTT--TEEEEEEECTTTCCEEEC
T ss_pred CCCEEEE-ECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCC--CCEEEEEEECCCCcEeec
Confidence 9998876 3444 5799999884 22 22223 234567899999999999887543 689996 5557765443
Q ss_pred e---eCCCceEEEEC
Q 013884 277 T---RAECSVTSEWS 288 (434)
Q Consensus 277 ~---~~~~~~~~~ws 288 (434)
. ..+.++++.|.
T Consensus 346 ~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 346 KKDIKVDKPVCLKFV 360 (361)
T ss_dssp SCCEECSSEEEEEEE
T ss_pred ceeeeCCCCeEEEEc
Confidence 2 33467777775
No 165
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.72 E-value=7.1e-15 Score=140.11 Aligned_cols=271 Identities=10% Similarity=0.075 Sum_probs=164.2
Q ss_pred cceEEecCCCcEEEEEecC----CCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----C--e
Q 013884 2 LLLLTCLRVGLIIQTFQKS----STPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----N--E 71 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~----~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~--~ 71 (434)
+..++| ||++|+..... ....+.+|.+||+.+++. ..+ . . +..++|||||++|++... + .
T Consensus 17 ~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l-~-----~-~~~~~~SpDg~~la~~~~~~~~~~~~ 86 (347)
T 2gop_A 17 LSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR-RFI-E-----N-ATMPRISPDGKKIAFMRANEEKKVSE 86 (347)
T ss_dssp EEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE-EEE-E-----S-CEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred cccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce-EEc-c-----c-CCCeEECCCCCEEEEEEeccCCCcce
Confidence 356677 99999875421 111257899999998875 333 1 2 237899999999988742 3 4
Q ss_pred EEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCC-C---------------------CCCceEEEEEcCCCC
Q 013884 72 IQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPES-K---------------------GSPASVQIYACGKDL 129 (434)
Q Consensus 72 i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~-~---------------------~~~~~v~i~~~~~~~ 129 (434)
|.+|++........... .. +..+.|||+ +..+++...+. . .....|.+|++..
T Consensus 87 l~~~~~~~g~~~~l~~~-~~-~~~~~wspd-g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~-- 161 (347)
T 2gop_A 87 IWVADLETLSSKKILEA-KN-IRSLEWNED-SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES-- 161 (347)
T ss_dssp EEEEETTTTEEEEEEEE-SE-EEEEEECTT-SSEEEEEEECCCC---------CCCC---------CEEEEEEEETTT--
T ss_pred EEEEECCCCceEEEEcC-CC-ccceeECCC-CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC--
Confidence 77888766332111111 22 889999999 45555543220 0 1135688888866
Q ss_pred CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCE
Q 013884 130 QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSE 209 (434)
Q Consensus 130 ~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~ 209 (434)
+..+..++. . ....+.|+|+| +++.+..+.+.. ...+...||.++ .+. ...+.- . +.+.. +||||+.
T Consensus 162 -~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~--~~~~~~~l~~~d-~~~-~~~l~~-~-~~~~~--~spdg~~ 228 (347)
T 2gop_A 162 -EEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIP--QYFKFWDIYIWE-DGK-EEKMFE-K-VSFYA--VDSDGER 228 (347)
T ss_dssp -TEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSC--CSSCCEEEEEEE-TTE-EEEEEE-E-ESEEE--EEECSSC
T ss_pred -CeEEeeecC-C-CcccccCCCCe--EEEEEecccccc--cccccccEEEeC-CCc-eEEecc-C-cceee--ECCCCCE
Confidence 444244444 3 67789999999 555443221100 000133578777 332 222221 2 44444 4999999
Q ss_pred EEEEEccC------CCeEEEEeccceeEEEc---CCcCeeE-EEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC
Q 013884 210 FAVVYGFM------PASATIFNKKCRPILEL---GSGPYNT-VRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA 279 (434)
Q Consensus 210 ~av~~g~~------~~~i~l~d~~~~~~~~~---~~~~~~~-i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~ 279 (434)
+++++... ...|.+|| .+.. ..+ +...+.. +.|+ || ++++++ .+|.+.|| +.+++......+
T Consensus 229 l~~~~~~~~~~~~~~~~l~~~d-~~~~-~~l~~~~~~~~~~~~~~s-dg-~~~~~~---~~~~~~l~-~~~g~~~~~~~~ 300 (347)
T 2gop_A 229 ILLYGKPEKKYMSEHNKLYIYD-GKEV-MGILDEVDRGVGQAKIKD-GK-VYFTLF---EEGSVNLY-IWDGEIKPIAKG 300 (347)
T ss_dssp EEEEECCSSSCCCSSCEEEEEC-SSCE-EESSTTCCSEEEEEEEET-TE-EEEEEE---ETTEEEEE-EESSSEEEEECS
T ss_pred EEEEEccccCCccccceEEEEC-CCce-EeccccCCcccCCccEEc-Cc-EEEEEe---cCCcEEEE-EcCCceEEEecC
Confidence 98765332 24788888 4433 333 3456665 8999 98 777776 44688998 776655444443
Q ss_pred C-CceEEEECCCCCEEEEEEcCCceeeCCcE-EEEeecC
Q 013884 280 E-CSVTSEWSPDGRYFMTATTAPRLQIDNGI-KIFHHNG 316 (434)
Q Consensus 280 ~-~~~~~~wspdg~~l~tas~~~rl~~D~~i-~iw~~~g 316 (434)
. .+..++|+| +.+++++. ++.. .||.++|
T Consensus 301 ~~~v~~~~~s~--~~~~~~~~------~~~~~~l~~~~g 331 (347)
T 2gop_A 301 RHWIMGFDVDE--IVVYLKET------ATRLRELFTWDG 331 (347)
T ss_dssp SSEEEEEEESS--SEEEEEEC------SSSCCEEEEESS
T ss_pred CCeEEeeeeeC--cEEEEEcC------CCChHHheEeCC
Confidence 3 445599999 67777776 5543 7777763
No 166
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.71 E-value=3.7e-15 Score=155.06 Aligned_cols=290 Identities=8% Similarity=-0.027 Sum_probs=168.4
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCC---------eeeec--CCCcE-EEEecC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWP---------SIRFS--SDEAV-ACRMAT 69 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~---------~~~~S--~d~~~-la~~~~ 69 (434)
|..++||+++-++++..+. .++...||.+..+.....+.... ..+. .+.|+ |||++ |++..+
T Consensus 26 ~~~~~~s~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~ 99 (662)
T 3azo_A 26 PACVGAVGDEVWWVAPRPA---EAGRATLVRRRADGAEESALPAP---WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF 99 (662)
T ss_dssp CEEEEEETTEEEEEEEETT---TTTEEEEEEECTTSCEEESSCTT---CCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT
T ss_pred cceeEEcCCeEEEEecCcc---cCCcEEEEEECCCCCcceeCCCC---ccccccccccCCccceeeeecCCCeEEEEEEC
Confidence 6788999887777765311 46788999865444445554432 2222 45566 99998 888765
Q ss_pred --CeEEEEeCC--C-CCCceeeee-----ecCCeeEEEEeCCCCCeEEEEecCC-----CCCCceEEEEEcCCCC--CCC
Q 013884 70 --NEIQFFDTT--D-FPKGILYRL-----RVPGVAAFEVSKAPGSHVAVFVPES-----KGSPASVQIYACGKDL--QSQ 132 (434)
Q Consensus 70 --~~i~v~~~~--~-~~~~~~~~~-----~~~~v~~~~~sp~~~~~ia~~~~~~-----~~~~~~v~i~~~~~~~--~~~ 132 (434)
..|.+++.. . ... ..... +...+..++|||++ ..|++...+. ......|.+|++.... ...
T Consensus 100 ~~~~l~~~~~~~~g~~~~-~~l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 177 (662)
T 3azo_A 100 GDQRLYAFEPDAPGGAVP-RPLTPVSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS 177 (662)
T ss_dssp TTCCEEEECTTSTTCCCC-EECSCCCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG
T ss_pred CCCeEEEEcCCCCCCCCC-EeccCCccCCCCccccCcEECCCC-CEEEEEEecccCCCCCCceeEEEEEECCCCccccCC
Confidence 466676665 1 221 11111 12346789999994 5555443221 0222578888875410 002
Q ss_pred ceeeee-ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCC-C---ceeeeecCCCCCeEEEEECcCC
Q 013884 133 PLARRS-FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG-T---HEGLVPLRKEGPVHDVQWSYSG 207 (434)
Q Consensus 133 ~i~~~~-~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~-~---~~~~v~l~~~~~i~~~~wspdg 207 (434)
....+. ........+.|||||+.|++.... .....| +...|+.+++.+ + ....+...+...+..++|+|||
T Consensus 178 ~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~---~~~~~~-~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg 253 (662)
T 3azo_A 178 AVRELSDDAHRFVTGPRLSPDGRQAVWLAWD---HPRMPW-EGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDG 253 (662)
T ss_dssp GSEESSCSCSSEECCCEECTTSSEEEEEEEC---TTCCTT-TCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTS
T ss_pred ceeEEEecCCCcccCceECCCCCEEEEEECC---CCCCCC-CCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCC
Confidence 333443 334456678999999998775422 222211 234688888873 3 2223332335789999999999
Q ss_pred CEEEEEEccCCC--eEEEEeccceeEEEc---CCcC--------eeEEEECCCCCeEEEEecCCCCCeEEEE--EccCCE
Q 013884 208 SEFAVVYGFMPA--SATIFNKKCRPILEL---GSGP--------YNTVRWNPKGKFLCLAGFGNLPGDMAFW--DYVDGK 272 (434)
Q Consensus 208 ~~~av~~g~~~~--~i~l~d~~~~~~~~~---~~~~--------~~~i~~sP~g~~l~~~~~~~~~g~i~iw--d~~~~~ 272 (434)
+ ++++ +..++ .|.+||+.......+ +... +..++|+|+|++++++. . |.+.|| |..+++
T Consensus 254 ~-l~~~-~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~---~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 254 S-LIVA-TDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHG---K-GAAVLGILDPESGE 327 (662)
T ss_dssp C-EEEE-ECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEB---S-SSCEEEEEETTTTE
T ss_pred e-EEEE-ECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEE---c-CccEEEEEECCCCc
Confidence 9 5553 45566 777778754444433 1111 46789999999988887 3 566777 766666
Q ss_pred EEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884 273 QLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 273 ~i~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~ 314 (434)
+..+..+ ......|++||..++..+..+ +....||.+
T Consensus 328 -~~~l~~~~~~~~~~~s~~~~~~~~~~~~~----~~~~~i~~~ 365 (662)
T 3azo_A 328 -LVDAAGPWTEWAATLTVSGTRAVGVAASP----RTAYEVVEL 365 (662)
T ss_dssp -EEECCSSCCEEEEEEEEETTEEEEEEEET----TEEEEEEEE
T ss_pred -EEEecCCCCeEEEEEecCCCEEEEEEcCC----CCCCEEEEE
Confidence 4455444 223322377777655444321 444455544
No 167
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.68 E-value=4.3e-14 Score=134.21 Aligned_cols=245 Identities=9% Similarity=-0.021 Sum_probs=148.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcC---CCCCCeeeecCCCcEEEEec----------
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMT---KTTWPSIRFSSDEAVACRMA---------- 68 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~---~~~~~~~~~S~d~~~la~~~---------- 68 (434)
+..++|||+|++|+.... .++.|.+||+.+++.+..+...... ...+..+.|+|||++++.+.
T Consensus 45 ~~~~~~s~dg~~~~v~~~----~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~ 120 (349)
T 1jmx_B 45 PGTAMMAPDNRTAYVLNN----HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY 120 (349)
T ss_dssp SCEEEECTTSSEEEEEET----TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred CceeEECCCCCEEEEEeC----CCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEccccccccccc
Confidence 457899999998766551 4688999999999888776543100 12245889999999988875
Q ss_pred ---CCeEEEEeCCCCCCce-eeee-ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc-
Q 013884 69 ---TNEIQFFDTTDFPKGI-LYRL-RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC- 142 (434)
Q Consensus 69 ---~~~i~v~~~~~~~~~~-~~~~-~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~- 142 (434)
++.|.+||+....... .... ....+..++|+|++. .++ . . ..|.+|++.+ .+.+........
T Consensus 121 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~--~-~-----~~i~~~d~~~---~~~~~~~~~~~~~ 188 (349)
T 1jmx_B 121 VVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYV--A-G-----PDIYKMDVKT---GKYTVALPLRNWN 188 (349)
T ss_dssp EECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEE--E-S-----SSEEEECTTT---CCEEEEECSTTCC
T ss_pred ccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEE--c-c-----CcEEEEeCCC---CceeccccccccC
Confidence 4899999987632111 1112 223578889999954 332 1 1 2388998876 444443332210
Q ss_pred -----------------------ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC-CCCCe
Q 013884 143 -----------------------STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPV 198 (434)
Q Consensus 143 -----------------------~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i 198 (434)
....+.+++++..... ...+...+..++........+.+. ....+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (349)
T 1jmx_B 189 RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPA-----------TADLLYGYLSVDLKTGKTHTQEFADLTELY 257 (349)
T ss_dssp CTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------C-----------CCEEEEEEEEEETTTCCEEEEEEEECSSCE
T ss_pred CccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcc-----------ccccceeEEEEeccCCcEEecccccCCCcc
Confidence 1112233332211000 000001111122222211111111 24567
Q ss_pred EEEEECc-CCCEEEEEEccCCCeEEEEecccee-EEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEE
Q 013884 199 HDVQWSY-SGSEFAVVYGFMPASATIFNKKCRP-ILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG 275 (434)
Q Consensus 199 ~~~~wsp-dg~~~av~~g~~~~~i~l~d~~~~~-~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~ 275 (434)
..++|+| ||+.+++. ++.|.+||++... +..+ .......++|+|+|++|++++ .++.|.+||+++++.+.
T Consensus 258 ~~~~~sp~dg~~l~~~----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~---~~~~v~v~d~~~~~~~~ 330 (349)
T 1jmx_B 258 FTGLRSPKDPNQIYGV----LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGG---TFNDLAVFNPDTLEKVK 330 (349)
T ss_dssp EEEEECSSCTTEEEEE----ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEES---BSSEEEEEETTTTEEEE
T ss_pred eeeEecCCCCCEEEEE----cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEec---CCCeEEEEeccccceee
Confidence 8999999 99988864 5699999996443 3333 334567899999999988865 34799999999999888
Q ss_pred EeeCC
Q 013884 276 TTRAE 280 (434)
Q Consensus 276 ~~~~~ 280 (434)
.+..+
T Consensus 331 ~~~~~ 335 (349)
T 1jmx_B 331 NIKLP 335 (349)
T ss_dssp EEECS
T ss_pred eeecC
Confidence 77544
No 168
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.66 E-value=1.1e-13 Score=145.23 Aligned_cols=292 Identities=11% Similarity=-0.045 Sum_probs=171.9
Q ss_pred cCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecC---cCCCCCCeeeecCCCcEEEEecC--C----eEEEEeCC
Q 013884 8 LRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKN---MTKTTWPSIRFSSDEAVACRMAT--N----EIQFFDTT 78 (434)
Q Consensus 8 SP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~---~~~~~~~~~~~S~d~~~la~~~~--~----~i~v~~~~ 78 (434)
+|||++++......+.....|.+.+..+++...-+.... .+...+..++|||||++||++.+ + +|++||+.
T Consensus 80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~ 159 (710)
T 2xdw_A 80 FKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD 159 (710)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT
T ss_pred EEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC
Confidence 599999987664322222355555655554322221111 01113457899999999998732 2 89999998
Q ss_pred CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCC-----------CCCceEEEEEcCCCCCCCce--eeeee--cccc
Q 013884 79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESK-----------GSPASVQIYACGKDLQSQPL--ARRSF--FRCS 143 (434)
Q Consensus 79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~-----------~~~~~v~i~~~~~~~~~~~i--~~~~~--~~~~ 143 (434)
...... ..+....+..++|||| +..+++...... ..+..|.+|++.+ .+.. ..... +...
T Consensus 160 tg~~~~-~~~~~~~~~~~~wspD-g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t---~~~~~~~v~~~~~~~~~ 234 (710)
T 2xdw_A 160 GAKELP-DVLERVKFSCMAWTHD-GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGT---DQSEDILCAEFPDEPKW 234 (710)
T ss_dssp TTEEEE-EEEEEECSCCEEECTT-SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTS---CGGGCEEEECCTTCTTC
T ss_pred CCCCCc-ccccCcccceEEEEeC-CCEEEEEEECCccccccccccccCCCCEEEEEECCC---CcccceEEeccCCCCeE
Confidence 754321 1222223667999999 455544432222 2355799999866 3321 11111 2223
Q ss_pred eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCC------Cc--eeeeecCCCCCeEEEEECcCCCEEEEEEc
Q 013884 144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG------TH--EGLVPLRKEGPVHDVQWSYSGSEFAVVYG 215 (434)
Q Consensus 144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~------~~--~~~v~l~~~~~i~~~~wspdg~~~av~~g 215 (434)
...+.|+|||++|++......+ ....||+++..+ .. ...+.. ....+.. .|+|+|+.|++.+.
T Consensus 235 ~~~~~~SpDg~~l~~~~~~~~~-------~~~~l~~~d~~~~~~~~~~~~~~~~l~~-~~~~~~~-~~s~dg~~l~~~s~ 305 (710)
T 2xdw_A 235 MGGAELSDDGRYVLLSIREGCD-------PVNRLWYCDLQQESNGITGILKWVKLID-NFEGEYD-YVTNEGTVFTFKTN 305 (710)
T ss_dssp EEEEEECTTSCEEEEEEECSSS-------SCCEEEEEEGGGSSSSSCSSCCCEEEEC-SSSSCEE-EEEEETTEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEccCC-------CccEEEEEECcccccccCCccceEEeeC-CCCcEEE-EEeccCCEEEEEEC
Confidence 5688999999998876532211 123577777654 21 222222 2333433 58999999998764
Q ss_pred cC--CCeEEEEecccee---EEEc--CC--cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceE
Q 013884 216 FM--PASATIFNKKCRP---ILEL--GS--GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVT 284 (434)
Q Consensus 216 ~~--~~~i~l~d~~~~~---~~~~--~~--~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~ 284 (434)
.. ...|.+||+.... ...+ +. ..+..+.|++++.++++...+ ....|++||+.+++.+..+..+ .+..
T Consensus 306 ~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~-g~~~l~~~~~~~g~~~~~l~~~~~~v~~ 384 (710)
T 2xdw_A 306 RHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD-VKNTLQLHDLATGALLKIFPLEVGSVVG 384 (710)
T ss_dssp TTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET-TEEEEEEEETTTCCEEEEECCCSSEEEE
T ss_pred CCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEEC-CEEEEEEEECCCCCEEEecCCCCceEEE
Confidence 32 2379999986431 1222 22 257789999877777766532 2235778888777766666544 3345
Q ss_pred EEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884 285 SEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 285 ~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
+.++||+..|+...++.. ....|.+||+..
T Consensus 385 ~~~s~d~~~l~~~~ss~~--~P~~i~~~d~~t 414 (710)
T 2xdw_A 385 YSGQKKDTEIFYQFTSFL--SPGIIYHCDLTK 414 (710)
T ss_dssp EECCTTCSEEEEEEECSS--CCCEEEEEETTS
T ss_pred EecCCCCCEEEEEEeCCC--CCCEEEEEECCC
Confidence 899999987776544221 156889999843
No 169
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.64 E-value=5.4e-15 Score=146.14 Aligned_cols=138 Identities=13% Similarity=0.189 Sum_probs=108.8
Q ss_pred CCCCCeEEEEECcCCCEEEEE--EccCCCeEEEEeccce---------e---EEEc--CCcCeeEEEECCC-CCeEEEEe
Q 013884 193 RKEGPVHDVQWSYSGSEFAVV--YGFMPASATIFNKKCR---------P---ILEL--GSGPYNTVRWNPK-GKFLCLAG 255 (434)
Q Consensus 193 ~~~~~i~~~~wspdg~~~av~--~g~~~~~i~l~d~~~~---------~---~~~~--~~~~~~~i~~sP~-g~~l~~~~ 255 (434)
...+.|.+++|+|+|+.|+++ ++..++.|++||++.. . +..+ |...+++++|+|+ +++|++++
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 346789999999999999875 5788999999998532 1 2222 5788999999998 78999998
Q ss_pred cCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee--ec-------
Q 013884 256 FGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK--MF------- 324 (434)
Q Consensus 256 ~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~--~~------- 324 (434)
.+|+|++||++++..+.....| .+..++|+|||++|++++. |+.|+|||..++..... +.
T Consensus 170 ---~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 240 (434)
T 2oit_A 170 ---ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQ------NGTVVQYLPTLQEKKVIPCPPFYESDHP 240 (434)
T ss_dssp ---TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEET------TSCEEEECTTCCEEEEECCCTTCCTTSC
T ss_pred ---CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcC------CCcEEEEccCCcccccccCCcccCCCCc
Confidence 5679999999998766555443 6777999999999999999 99999999986654332 11
Q ss_pred ccceeeEEEcCCCCC
Q 013884 325 DKLFQAEWKPVSPDK 339 (434)
Q Consensus 325 ~~~~~~~w~p~~~~~ 339 (434)
..+..+.|.|....+
T Consensus 241 ~~v~~v~w~~~~~~l 255 (434)
T 2oit_A 241 VRVLDVLWIGTYVFA 255 (434)
T ss_dssp EEEEEEEEEETTEEE
T ss_pred eeEEEEEEecCceEE
Confidence 167899999876554
No 170
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.64 E-value=1.4e-13 Score=132.61 Aligned_cols=295 Identities=10% Similarity=0.070 Sum_probs=172.5
Q ss_pred CCCcEEEEEecCCC-CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----------CCeEEEEe
Q 013884 9 RVGLIIQTFQKSST-PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----------TNEIQFFD 76 (434)
Q Consensus 9 P~g~~L~t~~~~~~-~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----------~~~i~v~~ 76 (434)
|+++++........ ..|+.|.+||..+++.+.++.... . +.+.|||||++++.+. ++.|.+||
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~---~--p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d 87 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAF---N--GHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWD 87 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCE---E--EEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCC---C--CceEECCCCCEEEEEEecccccccCCCCCEEEEEE
Confidence 47888877652211 136799999999999888776542 2 2789999999988764 35799999
Q ss_pred CCCCCCceeeeee------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee-eeecccceeEEEE
Q 013884 77 TTDFPKGILYRLR------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR-RSFFRCSTVQLNW 149 (434)
Q Consensus 77 ~~~~~~~~~~~~~------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~-~~~~~~~~~~~~w 149 (434)
...........+. ......+.+||++ .++.+... +..+.|.+|++.. .+.+.. ..... ...+..
T Consensus 88 ~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg-~~l~v~n~---~~~~~v~v~d~~~---~~~~~~~i~~~~--~~~v~~ 158 (361)
T 2oiz_A 88 ADKLTFEKEISLPPKRVQGLNYDGLFRQTTDG-KFIVLQNA---SPATSIGIVDVAK---GDYVEDVTAAAG--CWSVIP 158 (361)
T ss_dssp TTTCCEEEEEEECTTBCCBCCCGGGEEECTTS-SEEEEEEE---SSSEEEEEEETTT---TEEEEEEGGGTT--EEEEEE
T ss_pred CcCCcEEEEEEcCccccccCCCcceEEECCCC-CEEEEECC---CCCCeEEEEECCC---CcEEEEEecCCC--cceeEE
Confidence 8765432222221 1245678999994 44433221 1246899999987 555544 32211 111233
Q ss_pred CCCCCeEEEEEEecccccCceeecceeEEEEeeCCCce------eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEE
Q 013884 150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE------GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATI 223 (434)
Q Consensus 150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~------~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l 223 (434)
.|+|...++..+ .|.... ++.++..+... ..+... ..++ .+.++|++..++++ ..++.+.+
T Consensus 159 ~p~~~~~~~~~~--~dg~~~-------~v~~~~~g~~~~~~~~~~~~~~~-~~~~-~~~~~~~g~~~~~~--~~~~~v~v 225 (361)
T 2oiz_A 159 QPNRPRSFMTIC--GDGGLL-------TINLGEDGKVASQSRSKQMFSVK-DDPI-FIAPALDKDKAHFV--SYYGNVYS 225 (361)
T ss_dssp CTTSSSEEEEEE--TTSSEE-------EEEECTTSSEEEEEECCCCSCTT-TSCB-CSCCEECSSEEEEE--BTTSEEEE
T ss_pred cCCCCeeEEEEC--CCCcEE-------EEEECCCCcEeeeccccceEcCC-CCce-EEEecccCCEEEEE--eCCCeEEE
Confidence 444432222111 111100 01111001100 001111 1222 33446788777754 34678999
Q ss_pred EeccceeE---EE--cCC----------cCeeEEEECCCCCeEEEEec-CC-------CCCeEEEEEccCCEEEEEeeCC
Q 013884 224 FNKKCRPI---LE--LGS----------GPYNTVRWNPKGKFLCLAGF-GN-------LPGDMAFWDYVDGKQLGTTRAE 280 (434)
Q Consensus 224 ~d~~~~~~---~~--~~~----------~~~~~i~~sP~g~~l~~~~~-~~-------~~g~i~iwd~~~~~~i~~~~~~ 280 (434)
+|+....+ .. +.. .....++|+|+|+.++++.. +. ..+.|.+||+.+++.+..+..+
T Consensus 226 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~ 305 (361)
T 2oiz_A 226 ADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR 305 (361)
T ss_dssp EECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT
T ss_pred EEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC
Confidence 99853221 11 110 11223789999998877643 10 1358999999999999988766
Q ss_pred CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cC--ceeeee-ec-ccceeeEEEcCCC
Q 013884 281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NG--SLFFKK-MF-DKLFQAEWKPVSP 337 (434)
Q Consensus 281 ~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g--~~~~~~-~~-~~~~~~~w~p~~~ 337 (434)
.+..++|+|||++|+++. ++.|.|||. +| +++... .. ..-..+.+.|++.
T Consensus 306 ~p~~ia~spdg~~l~v~n-------~~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 306 DALSMTIDQQRNLMLTLD-------GGNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp TCCEEEEETTTTEEEEEC-------SSCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CeeEEEECCCCCEEEEeC-------CCeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 666699999999887654 499999998 55 555553 22 2456777877753
No 171
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.64 E-value=1.7e-13 Score=143.93 Aligned_cols=255 Identities=9% Similarity=-0.032 Sum_probs=157.8
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-Ce---------
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NE--------- 71 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~--------- 71 (434)
+.+++|||||++|+......+.....|+|||+.+|+.+...... ..+..+.|||||+.|+++.. +.
T Consensus 127 ~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~----~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~ 202 (710)
T 2xdw_A 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER----VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET 202 (710)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE----ECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred EEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC----cccceEEEEeCCCEEEEEEECCcccccccccc
Confidence 45789999999999877444444458999999999876543222 12337899999998888742 23
Q ss_pred -------EEEEeCCCCCCceeeeee----cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC----CCCceee
Q 013884 72 -------IQFFDTTDFPKGILYRLR----VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL----QSQPLAR 136 (434)
Q Consensus 72 -------i~v~~~~~~~~~~~~~~~----~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~----~~~~i~~ 136 (434)
|.+|++............ ...+..+.|||+ +..+++...........|.+|++.... .......
T Consensus 203 ~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpD-g~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 281 (710)
T 2xdw_A 203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDD-GRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK 281 (710)
T ss_dssp CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTT-SCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred ccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCC-CCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence 999998764321111112 123678999999 456655543322225688999986410 0113344
Q ss_pred eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCce---eeeecCCC-CCeEEEEECcCCCEEEE
Q 013884 137 RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE---GLVPLRKE-GPVHDVQWSYSGSEFAV 212 (434)
Q Consensus 137 ~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~---~~v~l~~~-~~i~~~~wspdg~~~av 212 (434)
+....... ...|+++|+.|++.+..+ . ....|+.+++.+... ..+.-... ..+.+++|++++ .+++
T Consensus 282 l~~~~~~~-~~~~s~dg~~l~~~s~~~--~------~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~lv~ 351 (710)
T 2xdw_A 282 LIDNFEGE-YDYVTNEGTVFTFKTNRH--S------PNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN-FLVL 351 (710)
T ss_dssp EECSSSSC-EEEEEEETTEEEEEECTT--C------TTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT-EEEE
T ss_pred eeCCCCcE-EEEEeccCCEEEEEECCC--C------CCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC-EEEE
Confidence 44333333 335899999988874321 1 122477777655421 22222212 367889999654 4444
Q ss_pred EEccCCC--eEEEEec-cceeEEEc--CCcCeeEEEECCCCCeEEEE-ecCCCCCeEEEEEccCCE
Q 013884 213 VYGFMPA--SATIFNK-KCRPILEL--GSGPYNTVRWNPKGKFLCLA-GFGNLPGDMAFWDYVDGK 272 (434)
Q Consensus 213 ~~g~~~~--~i~l~d~-~~~~~~~~--~~~~~~~i~~sP~g~~l~~~-~~~~~~g~i~iwd~~~~~ 272 (434)
. ...++ .|.+||+ .+..+..+ +.+.+..+.++|+++.|++. +.....++|++||+.+++
T Consensus 352 ~-~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 C-YLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp E-EEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred E-EEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 3 44455 5677787 45544444 56667889999999866544 333357899999998765
No 172
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.62 E-value=5.5e-13 Score=128.44 Aligned_cols=263 Identities=12% Similarity=0.093 Sum_probs=155.2
Q ss_pred eEEecCCCcEEEEEecC-----CCCCCCcEEEEEcCCCcEEEEEeecCcC---CCCCCeeeecCCCcEEEEec---CCeE
Q 013884 4 LLTCLRVGLIIQTFQKS-----STPQEKNVILWKTETGEAVYQLFQKNMT---KTTWPSIRFSSDEAVACRMA---TNEI 72 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~-----~~~~d~~v~iWd~~~g~~~~~~~~~~~~---~~~~~~~~~S~d~~~la~~~---~~~i 72 (434)
.++|||||++|++.... .+..++.|.+||+.+++.+.++...... ......+.+||||++|+.+. +++|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 58999999999987631 1123567999999999998887643100 02233789999999998763 4799
Q ss_pred EEEeCCCCCCceeee-eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee---eccc--ceeE
Q 013884 73 QFFDTTDFPKGILYR-LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS---FFRC--STVQ 146 (434)
Q Consensus 73 ~v~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~---~~~~--~~~~ 146 (434)
.+||+.... .... +...+...+.+.|++...++...++ +.+.++.+... ++...... .+.. ....
T Consensus 134 ~v~d~~~~~--~~~~~i~~~~~~~v~~~p~~~~~~~~~~~d-----g~~~~v~~~~~--g~~~~~~~~~~~~~~~~~~~~ 204 (361)
T 2oiz_A 134 GIVDVAKGD--YVEDVTAAAGCWSVIPQPNRPRSFMTICGD-----GGLLTINLGED--GKVASQSRSKQMFSVKDDPIF 204 (361)
T ss_dssp EEEETTTTE--EEEEEGGGTTEEEEEECTTSSSEEEEEETT-----SSEEEEEECTT--SSEEEEEECCCCSCTTTSCBC
T ss_pred EEEECCCCc--EEEEEecCCCcceeEEcCCCCeeEEEECCC-----CcEEEEEECCC--CcEeeeccccceEcCCCCceE
Confidence 999998753 2333 4444444455666643433333322 34555555331 12111100 0100 0111
Q ss_pred EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceee---eecCC---------CCCeEEEEECcCCCEEEEEE
Q 013884 147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL---VPLRK---------EGPVHDVQWSYSGSEFAVVY 214 (434)
Q Consensus 147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~---v~l~~---------~~~i~~~~wspdg~~~av~~ 214 (434)
+..+++|..+++.. .+ + .++.++........ ..+.. ......++++||++++.+..
T Consensus 205 ~~~~~~g~~~~~~~---~~-------~--~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~ 272 (361)
T 2oiz_A 205 IAPALDKDKAHFVS---YY-------G--NVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFM 272 (361)
T ss_dssp SCCEECSSEEEEEB---TT-------S--EEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEE
T ss_pred EEecccCCEEEEEe---CC-------C--eEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEE
Confidence 22245555544321 11 1 23444432221111 01100 11222378999999888753
Q ss_pred c-c--------CCCeEEEEeccc-eeEEEcC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEee--C
Q 013884 215 G-F--------MPASATIFNKKC-RPILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTR--A 279 (434)
Q Consensus 215 g-~--------~~~~i~l~d~~~-~~~~~~~-~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~--~ 279 (434)
. . ....|.+||++. +.+..+. .. ...|+|+|||++|++++. +.|.+||..++ +.+..+. +
T Consensus 273 ~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~----~~v~v~D~~t~~l~~~~~i~~~G 347 (361)
T 2oiz_A 273 HPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG----GNVNVYDISQPEPKLLRTIEGAA 347 (361)
T ss_dssp ESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS----SCEEEEECSSSSCEEEEEETTSC
T ss_pred ccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC----CeEEEEECCCCcceeeEEeccCC
Confidence 2 1 124899999964 4444442 23 899999999999988762 69999999999 9998863 3
Q ss_pred CCceEEEECCCCC
Q 013884 280 ECSVTSEWSPDGR 292 (434)
Q Consensus 280 ~~~~~~~wspdg~ 292 (434)
.....+.++|||+
T Consensus 348 ~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 348 EASLQVQFHPVGG 360 (361)
T ss_dssp SSEEEEEECCCSC
T ss_pred CCcEEEEecCCCC
Confidence 4667799999996
No 173
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.60 E-value=4.2e-13 Score=129.29 Aligned_cols=140 Identities=10% Similarity=0.027 Sum_probs=95.0
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeE---EEc----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEE
Q 013884 195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPI---LEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW 266 (434)
Q Consensus 195 ~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~---~~~----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iw 266 (434)
...++.++|+|||+++++. ...+..|.+||++ ...+ ..+ +......++|||||++|++++.. ++.|.+|
T Consensus 144 ~~~~~~~~~spdG~~l~~~-~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~--~~~v~v~ 220 (365)
T 1jof_A 144 NTGIHGMVFDPTETYLYSA-DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA--GNRICEY 220 (365)
T ss_dssp TCCEEEEEECTTSSEEEEE-ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT--TTEEEEE
T ss_pred CCcceEEEECCCCCEEEEE-cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECC--CCeEEEE
Confidence 4578999999999988753 4445699999986 3222 222 14457889999999999887643 3699999
Q ss_pred Ecc--CCEEE------EEeeC----C--------CceEEE-ECCCCCEEEEEEcCCceeeCC-----cEEEEee--cCce
Q 013884 267 DYV--DGKQL------GTTRA----E--------CSVTSE-WSPDGRYFMTATTAPRLQIDN-----GIKIFHH--NGSL 318 (434)
Q Consensus 267 d~~--~~~~i------~~~~~----~--------~~~~~~-wspdg~~l~tas~~~rl~~D~-----~i~iw~~--~g~~ 318 (434)
+++ +++.. ..+.. + .+..++ |||||++|+++... ++ .|.+|++ +|++
T Consensus 221 ~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~-----~~~~~~~~i~v~~~~~~g~~ 295 (365)
T 1jof_A 221 VIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA-----NKFELQGYIAGFKLRDCGSI 295 (365)
T ss_dssp EECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE-----SSTTSCCEEEEEEECTTSCE
T ss_pred EEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC-----CCCCCCCeEEEEEECCCCCE
Confidence 765 55432 22221 1 245699 99999999877652 33 8999998 4554
Q ss_pred eee---e--ecccceeeEEEc---CCCCCCCC
Q 013884 319 FFK---K--MFDKLFQAEWKP---VSPDKFGD 342 (434)
Q Consensus 319 ~~~---~--~~~~~~~~~w~p---~~~~~~~~ 342 (434)
... . .......+.|.| ++..++..
T Consensus 296 ~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~ 327 (365)
T 1jof_A 296 EKQLFLSPTPTSGGHSNAVSPCPWSDEWMAIT 327 (365)
T ss_dssp EEEEEEEECSSCCTTCCCEEECTTCTTEEEEE
T ss_pred EEeeeeeecCCCCcccceecCCCcCCCEEEEE
Confidence 431 1 122466788899 67776654
No 174
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.59 E-value=8.6e-14 Score=137.50 Aligned_cols=163 Identities=14% Similarity=0.137 Sum_probs=108.2
Q ss_pred ccceeEEEECCCCCeEEEEE-EecccccCceeecceeEEEEeeC--CC-ce------eeeecCCCCCeEEEEECcC-CCE
Q 013884 141 RCSTVQLNWNRGSTGLLAVA-QSDVDKTNQSYYGESKLNYLTTD--GT-HE------GLVPLRKEGPVHDVQWSYS-GSE 209 (434)
Q Consensus 141 ~~~~~~~~ws~~G~~l~~~~-~~~~d~~~~~~~g~~~l~~l~~~--~~-~~------~~v~l~~~~~i~~~~wspd-g~~ 209 (434)
...+..+.|+|+|++|++.. +...|.+.+.| .+... +. .. ......+...|.+++|+|+ +..
T Consensus 92 ~~~v~~l~~spdg~~lav~~~sgs~d~~v~iw-------d~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~ 164 (434)
T 2oit_A 92 KFPIHHLALSCDNLTLSACMMSSEYGSIIAFF-------DVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSM 164 (434)
T ss_dssp SSCEEEEEECTTSCEEEEEEEETTTEEEEEEE-------EHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTE
T ss_pred CCcccEEEEcCCCCEEEEEEeccCCCceEEEE-------EccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCE
Confidence 34577899999999887643 23344444433 22211 00 00 0111124678999999998 677
Q ss_pred EEEEEccCCCeEEEEecccee-EEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC------
Q 013884 210 FAVVYGFMPASATIFNKKCRP-ILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE------ 280 (434)
Q Consensus 210 ~av~~g~~~~~i~l~d~~~~~-~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~------ 280 (434)
|+ ++..|+.|++||++... +... |...+++++|||+|++|++|+ .+|.|.+||.+ ++....+..+
T Consensus 165 la--s~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs---~dg~v~iwd~~-~~~~~~~~~~~~~~~~ 238 (434)
T 2oit_A 165 VA--VCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGK---QNGTVVQYLPT-LQEKKVIPCPPFYESD 238 (434)
T ss_dssp EE--EEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEE---TTSCEEEECTT-CCEEEEECCCTTCCTT
T ss_pred EE--EEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEc---CCCcEEEEccC-CcccccccCCcccCCC
Confidence 77 57779999999997542 2222 567899999999999999999 56799999998 4444443322
Q ss_pred ---CceEEEECCCCCEEEEEEcC-CceeeCCcEEEEeecC
Q 013884 281 ---CSVTSEWSPDGRYFMTATTA-PRLQIDNGIKIFHHNG 316 (434)
Q Consensus 281 ---~~~~~~wspdg~~l~tas~~-~rl~~D~~i~iw~~~g 316 (434)
.+..++|++++.++++.+.. -+......+++|++..
T Consensus 239 ~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 239 HPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp SCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred CceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence 45569999999988776542 1111123499999854
No 175
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.59 E-value=1.2e-11 Score=125.85 Aligned_cols=289 Identities=13% Similarity=0.067 Sum_probs=178.3
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcC--CCcEEEEEeecCcCCCCCCeeeec----CCCcEEEEe--cCCeEE
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTE--TGEAVYQLFQKNMTKTTWPSIRFS----SDEAVACRM--ATNEIQ 73 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~--~g~~~~~~~~~~~~~~~~~~~~~S----~d~~~la~~--~~~~i~ 73 (434)
+..+.|||||+||++.+ .|+.|.+||+. +++.+.++.... . -..+.|| |||++++.+ ..++|.
T Consensus 199 p~~v~~SpDGr~lyv~~-----~dg~V~viD~~~~t~~~v~~i~~G~---~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ 269 (567)
T 1qks_A 199 VHISRLSASGRYLFVIG-----RDGKVNMIDLWMKEPTTVAEIKIGS---E-ARSIETSKMEGWEDKYAIAGAYWPPQYV 269 (567)
T ss_dssp EEEEEECTTSCEEEEEE-----TTSEEEEEETTSSSCCEEEEEECCS---E-EEEEEECCSTTCTTTEEEEEEEETTEEE
T ss_pred ccceEECCCCCEEEEEc-----CCCeEEEEECCCCCCcEeEEEecCC---C-CceeEEccccCCCCCEEEEEEccCCeEE
Confidence 35789999999999887 67899999995 888888776542 2 2378999 699988877 458999
Q ss_pred EEeCCCCCCceeeeee-----------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee-cc
Q 013884 74 FFDTTDFPKGILYRLR-----------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF-FR 141 (434)
Q Consensus 74 v~~~~~~~~~~~~~~~-----------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~-~~ 141 (434)
|+|..++......... ...+..+..|+++ ..+.+-.. ..+.|.++++.. ...+..... ..
T Consensus 270 ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~-~~~vv~~~----~~g~v~~vd~~~---~~~~~v~~i~~~ 341 (567)
T 1qks_A 270 IMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR-PEFIVNVK----ETGKILLVDYTD---LNNLKTTEISAE 341 (567)
T ss_dssp EEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS-SEEEEEET----TTTEEEEEETTC---SSEEEEEEEECC
T ss_pred EEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCC-CEEEEEec----CCCeEEEEecCC---Cccceeeeeecc
Confidence 9998776543222211 1146677778773 43333232 236788888765 222221111 11
Q ss_pred cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCc-eeeeec-C---CCCCeEEEEECcCCCEEEEEEcc
Q 013884 142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPL-R---KEGPVHDVQWSYSGSEFAVVYGF 216 (434)
Q Consensus 142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l-~---~~~~i~~~~wspdg~~~av~~g~ 216 (434)
.....+.|+|+|+++++.... ...+..++..... ...+++ . +.+.--.+ ++|++..+.+....
T Consensus 342 ~~~~d~~~~pdgr~~~va~~~-----------sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~ 409 (567)
T 1qks_A 342 RFLHDGGLDGSHRYFITAANA-----------RNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHM 409 (567)
T ss_dssp SSEEEEEECTTSCEEEEEEGG-----------GTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBS
T ss_pred ccccCceECCCCCEEEEEeCC-----------CCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCC
Confidence 223467899999998775421 1234555554332 223344 2 22212122 57886666553333
Q ss_pred CCCeEEEEeccc--------eeEEEcC--CcCeeEEEECCCCCeEEEEecCCC----CCeEEEEEccCC---------EE
Q 013884 217 MPASATIFNKKC--------RPILELG--SGPYNTVRWNPKGKFLCLAGFGNL----PGDMAFWDYVDG---------KQ 273 (434)
Q Consensus 217 ~~~~i~l~d~~~--------~~~~~~~--~~~~~~i~~sP~g~~l~~~~~~~~----~g~i~iwd~~~~---------~~ 273 (434)
.++.|.++|... +.+..+. ...-..|..+|+|++|.+....+- ...|.++|+.+. +.
T Consensus 410 g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~ 489 (567)
T 1qks_A 410 GDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKT 489 (567)
T ss_dssp SSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEE
T ss_pred CCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEE
Confidence 457999999753 3445542 222345789999999988764221 358999999876 22
Q ss_pred EEEe-------eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceee
Q 013884 274 LGTT-------RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFF 320 (434)
Q Consensus 274 i~~~-------~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~ 320 (434)
+... .+..+.+++|+|||+++.++.-.- ..-++.|.|+|.. +++..
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~-~~~~~~i~v~D~~t~~~~~ 543 (567)
T 1qks_A 490 LPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNG-KDQESALVVVDDKTLELKH 543 (567)
T ss_dssp ECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECC-TTSCCEEEEEETTTTEEEE
T ss_pred eccccccccCCCCcceEeeeECCCCCEEEEEeecC-CCCCCcEEEEECCCceEEE
Confidence 2210 123667899999999998874210 0016899999974 44443
No 176
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.57 E-value=7e-13 Score=126.20 Aligned_cols=236 Identities=12% Similarity=0.014 Sum_probs=136.5
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-C-----------
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-T----------- 69 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~----------- 69 (434)
+.++.|||||++|++.+...+.....|.+||+.+|+........ . +..+.|||||+.|++.. +
T Consensus 61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~----~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~ 135 (347)
T 2gop_A 61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK----N-IRSLEWNEDSRKLLIVGFKRREDEDFIFED 135 (347)
T ss_dssp CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES----E-EEEEEECTTSSEEEEEEECCCC--------
T ss_pred CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC----C-ccceeECCCCCEEEEEEccCCCcCCcEEEc
Confidence 46789999999999877332112345889999888765444332 2 55899999999888874 1
Q ss_pred ----------------CeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCC--c-eEEEEEcCCCCC
Q 013884 70 ----------------NEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSP--A-SVQIYACGKDLQ 130 (434)
Q Consensus 70 ----------------~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~--~-~v~i~~~~~~~~ 130 (434)
..|.+|++........... +.+..+.|||++ +++........+ . ...||.+..
T Consensus 136 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--~~~~~~~~spdg---~~~~~~~~~~~~~~~~~~~l~~~d~--- 207 (347)
T 2gop_A 136 DVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK--PRFSSGIWHRDK---IVVNVPHREIIPQYFKFWDIYIWED--- 207 (347)
T ss_dssp -CCCC---------CEEEEEEEETTTTEEEEEEEE--ETTCEEEEETTE---EEEEEECCCSSCCSSCCEEEEEEET---
T ss_pred ccceeecCcccccCccceEEEEECCCCeEEeeecC--CCcccccCCCCe---EEEEEecccccccccccccEEEeCC---
Confidence 4788899876432111222 278889999985 333222211111 1 334544433
Q ss_pred CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEE-EEECcCCCE
Q 013884 131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHD-VQWSYSGSE 209 (434)
Q Consensus 131 ~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~-~~wspdg~~ 209 (434)
+. +..+... ... ..++|+|+.|++......+. ......|+.++ .+. ...+.......+.. +.|+ || .
T Consensus 208 ~~-~~~l~~~-~~~--~~~spdg~~l~~~~~~~~~~----~~~~~~l~~~d-~~~-~~~l~~~~~~~~~~~~~~s-dg-~ 275 (347)
T 2gop_A 208 GK-EEKMFEK-VSF--YAVDSDGERILLYGKPEKKY----MSEHNKLYIYD-GKE-VMGILDEVDRGVGQAKIKD-GK-V 275 (347)
T ss_dssp TE-EEEEEEE-ESE--EEEEECSSCEEEEECCSSSC----CCSSCEEEEEC-SSC-EEESSTTCCSEEEEEEEET-TE-E
T ss_pred Cc-eEEeccC-cce--eeECCCCCEEEEEEccccCC----ccccceEEEEC-CCc-eEeccccCCcccCCccEEc-Cc-E
Confidence 32 2222222 233 33499999987765322110 01223577777 332 22222233567876 9999 88 4
Q ss_pred EEEEEccCCCeEEEEecc-ceeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEE
Q 013884 210 FAVVYGFMPASATIFNKK-CRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD 267 (434)
Q Consensus 210 ~av~~g~~~~~i~l~d~~-~~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd 267 (434)
++ .+..++.+.|| +. +...... +.+.+..+.|+| +++++++.+.....|+.+|
T Consensus 276 ~~--~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 276 YF--TLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EE--EEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EE--EEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 44 35567788888 65 3322222 466788999999 6666665443233455554
No 177
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.56 E-value=1.1e-12 Score=137.53 Aligned_cols=290 Identities=10% Similarity=-0.047 Sum_probs=166.0
Q ss_pred ecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecC---cCCCCCCeeeecCCCcEEEEecC------CeEEEEeC
Q 013884 7 CLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKN---MTKTTWPSIRFSSDEAVACRMAT------NEIQFFDT 77 (434)
Q Consensus 7 fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~---~~~~~~~~~~~S~d~~~la~~~~------~~i~v~~~ 77 (434)
.+|+|++++......+.....|.+.+...++...-+.... .+...+..+.|||||++||...+ .+|++||+
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence 5699999997764322222445666655555322222111 01123557899999999996521 48999999
Q ss_pred CCCCCceeeeeecCCe--eEEEEeCCCCCeEEEEecCCC--------CCCceEEEEEcCCCCCC-CceeeeeecccceeE
Q 013884 78 TDFPKGILYRLRVPGV--AAFEVSKAPGSHVAVFVPESK--------GSPASVQIYACGKDLQS-QPLARRSFFRCSTVQ 146 (434)
Q Consensus 78 ~~~~~~~~~~~~~~~v--~~~~~sp~~~~~ia~~~~~~~--------~~~~~v~i~~~~~~~~~-~~i~~~~~~~~~~~~ 146 (434)
....... ..+...+ ..++|||+ +..+++...... ..+..|++|++.+.... ..+.....+......
T Consensus 155 ~tg~~~~--~~~~~~~~~~~~~wspD-g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~ 231 (695)
T 2bkl_A 155 DSGEWSK--VDVIEGGKYATPKWTPD-SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQ 231 (695)
T ss_dssp TTCCBCS--SCCBSCCTTCCCEECTT-SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEE
T ss_pred CCCCCcC--CcccCcccccceEEecC-CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEE
Confidence 8755320 1133333 67999999 455544332221 23457999998762100 112121122345678
Q ss_pred EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEcc--CCCeEEEE
Q 013884 147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF--MPASATIF 224 (434)
Q Consensus 147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~--~~~~i~l~ 224 (434)
+.|+|||++|++...... +...||+++..+.....+.. ....+....| |+|+ |++.+.. .+.+|.+|
T Consensus 232 ~~~SpDG~~l~~~~~~~~--------~~~~l~~~~~~~~~~~~l~~-~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~ 300 (695)
T 2bkl_A 232 SDLSRDGKYLFVYILRGW--------SENDVYWKRPGEKDFRLLVK-GVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEV 300 (695)
T ss_dssp EEECTTSCCEEEEEEETT--------TEEEEEEECTTCSSCEEEEE-CSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEE
T ss_pred EEECCCCCEEEEEEeCCC--------CceEEEEEcCCCCceEEeec-CCCceEEEEe-cCCc-EEEEECCCCCCCEEEEE
Confidence 899999999877643211 23457777654432233332 2345566667 7787 7665432 24689999
Q ss_pred ecccee---EEEc--C--CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc-CCEEEEEeeCC---CceEEEECCCCCE
Q 013884 225 NKKCRP---ILEL--G--SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV-DGKQLGTTRAE---CSVTSEWSPDGRY 293 (434)
Q Consensus 225 d~~~~~---~~~~--~--~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~-~~~~i~~~~~~---~~~~~~wspdg~~ 293 (434)
|+.... ...+ + ...+..+.|+ +++++++.. .+|..+||.++ +++.+..+..+ .+..++++|||..
T Consensus 301 d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~---~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~ 376 (695)
T 2bkl_A 301 DPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYL---KDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDD 376 (695)
T ss_dssp BTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEE---ETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSE
T ss_pred eCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEE---ECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCE
Confidence 986432 1222 2 3456778888 566666655 33566665443 34445444433 2334889999987
Q ss_pred EEEEEcCCceeeCCcEEEEeecC
Q 013884 294 FMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 294 l~tas~~~rl~~D~~i~iw~~~g 316 (434)
|+...++..- ++.|++||+.+
T Consensus 377 l~~~~ss~~~--P~~v~~~d~~~ 397 (695)
T 2bkl_A 377 AYYVFTSFTT--PRQIYKTSVST 397 (695)
T ss_dssp EEEEEEETTE--EEEEEEEETTT
T ss_pred EEEEEcCCCC--CCEEEEEECCC
Confidence 7755542211 57899999854
No 178
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.56 E-value=3.4e-12 Score=120.83 Aligned_cols=270 Identities=8% Similarity=-0.012 Sum_probs=165.3
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~ 80 (434)
|.+|.|+|++..++... .++.+++| .++....+.... .....+.|++||+++++. .++.|.+|+....
T Consensus 8 ~~~~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~---~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~ 76 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPII-----SESELQTI---TAEPWLEISKKG---LQLEGLNFDRQGQLFLLDVFEGNIFKINPETK 76 (333)
T ss_dssp CCBCCSCGGGGCSSCCC-----CGGGSCEE---ECEEEEEEESSC---CCEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred cceeeecCCccceeEEe-----ecccCccc---ccceeEEEeccC---ccccCcEECCCCCEEEEECCCCEEEEEeCCCC
Confidence 67899999998887664 57888999 355555554432 233488999999977766 4579999998764
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee--ecccceeEEEECCCCCeEEE
Q 013884 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS--FFRCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~--~~~~~~~~~~ws~~G~~l~~ 158 (434)
............+..++++|++ .+++.- .........|.+|+... ........ ........+.++|+|+.+ +
T Consensus 77 ~~~~~~~~~~~~~~~i~~~~dg-~l~v~~-~~~~~~~~~i~~~d~~~---~~~~~~~~~~~~~~~~~~i~~d~~g~l~-v 150 (333)
T 2dg1_A 77 EIKRPFVSHKANPAAIKIHKDG-RLFVCY-LGDFKSTGGIFAATENG---DNLQDIIEDLSTAYCIDDMVFDSKGGFY-F 150 (333)
T ss_dssp CEEEEEECSSSSEEEEEECTTS-CEEEEE-CTTSSSCCEEEEECTTS---CSCEEEECSSSSCCCEEEEEECTTSCEE-E
T ss_pred cEEEEeeCCCCCcceEEECCCC-cEEEEe-CCCCCCCceEEEEeCCC---CEEEEEEccCccCCcccceEECCCCCEE-E
Confidence 3211111223568899999985 333221 11111224678888765 22221111 122346688999999743 3
Q ss_pred EEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc--ceeEE----
Q 013884 159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--CRPIL---- 232 (434)
Q Consensus 159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~--~~~~~---- 232 (434)
...... .. .+...|+.++..+.....+. .....+..++|+|+|+.+++. ....+.|.+||.+ +..+.
T Consensus 151 ~~~~~~--~~---~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~-~~~~~~i~~~d~~~~g~~~~~~~~ 223 (333)
T 2dg1_A 151 TDFRGY--ST---NPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVT-ETTANRLHRIALEDDGVTIQPFGA 223 (333)
T ss_dssp EECCCB--TT---BCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEE-EGGGTEEEEEEECTTSSSEEEEEE
T ss_pred Eecccc--cc---CCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEE-eCCCCeEEEEEecCCCcCcccccc
Confidence 221100 00 01234777765543222221 112357899999999977764 4456799999984 22221
Q ss_pred ----EcC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--------CceEEEECCCCCEEEEEEc
Q 013884 233 ----ELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--------CSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 233 ----~~~-~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--------~~~~~~wspdg~~l~tas~ 299 (434)
.+. ......++++++|++++... .++.|.+||. +++.+..+..+ .+..++|+|||+.|++++.
T Consensus 224 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~---~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~ 299 (333)
T 2dg1_A 224 TIPYYFTGHEGPDSCCIDSDDNLYVAMY---GQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 299 (333)
T ss_dssp EEEEECCSSSEEEEEEEBTTCCEEEEEE---TTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred eEEEecCCCCCCCceEECCCCCEEEEEc---CCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeC
Confidence 121 13567799999999776654 2368999998 45555555443 3567999999988877766
No 179
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.54 E-value=4.7e-12 Score=120.14 Aligned_cols=254 Identities=9% Similarity=0.052 Sum_probs=154.2
Q ss_pred cceEEecCCCcEEEEEecCCC-------------------CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCc
Q 013884 2 LLLLTCLRVGLIIQTFQKSST-------------------PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEA 62 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~-------------------~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~ 62 (434)
|.+|+|+|+|+++++...... ..+++|.+||..+|+.+..+..... .....++++++|+
T Consensus 26 v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~--~~p~gia~d~~g~ 103 (329)
T 3fvz_A 26 VSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLF--YLPHGLSIDTDGN 103 (329)
T ss_dssp EEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTC--SSEEEEEECTTSC
T ss_pred ceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCcc--CCceEEEECCCCC
Confidence 678999999999987652100 0124799999999998776543221 2333789999999
Q ss_pred EEEEec-CCeEEEEeCCCCCCceeeee-----------ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013884 63 VACRMA-TNEIQFFDTTDFPKGILYRL-----------RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130 (434)
Q Consensus 63 ~la~~~-~~~i~v~~~~~~~~~~~~~~-----------~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~ 130 (434)
++++.. ++.|++|+...... ....+ +......++++|+.+.++.. +. .....|++|
T Consensus 104 l~v~d~~~~~v~~~~~~g~~~-~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~---d~-~~~~~I~~~------- 171 (329)
T 3fvz_A 104 YWVTDVALHQVFKLDPHSKEG-PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVS---DG-YCNSRIVQF------- 171 (329)
T ss_dssp EEEEETTTTEEEEECTTCSSC-CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEE---EC-SSCCEEEEE-------
T ss_pred EEEEECCCCEEEEEeCCCCeE-EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEE---eC-CCCCeEEEE-------
Confidence 777764 57999999754311 11111 12245667777732222211 10 011233333
Q ss_pred CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEE
Q 013884 131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEF 210 (434)
Q Consensus 131 ~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~ 210 (434)
+++|..+..+... +..... ....-...+.++++|++..+
T Consensus 172 -------------------~~~g~~~~~~~~~---------------------g~~~~~-~~~~~~~p~gia~d~~~g~l 210 (329)
T 3fvz_A 172 -------------------SPSGKFVTQWGEE---------------------SSGSSP-RPGQFSVPHSLALVPHLDQL 210 (329)
T ss_dssp -------------------CTTSCEEEEECEE---------------------CCSSSC-CTTEESCEEEEEEETTTTEE
T ss_pred -------------------cCCCCEEEEeccC---------------------CCCCCC-CCcccCCCcEEEEECCCCEE
Confidence 3334432221100 000000 00001246889999995566
Q ss_pred EEEEccCCCeEEEEecc-ceeEEEc----CCcCeeEEEECCCCCeEEEEec----CCCCCeEEEEEccCCEEEEEee---
Q 013884 211 AVVYGFMPASATIFNKK-CRPILEL----GSGPYNTVRWNPKGKFLCLAGF----GNLPGDMAFWDYVDGKQLGTTR--- 278 (434)
Q Consensus 211 av~~g~~~~~i~l~d~~-~~~~~~~----~~~~~~~i~~sP~g~~l~~~~~----~~~~g~i~iwd~~~~~~i~~~~--- 278 (434)
.+ +...++.|.+||.+ +..+..+ .......++|+| |..++..+. +.....|.+||..+++.+..+.
T Consensus 211 ~v-~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~ 288 (329)
T 3fvz_A 211 CV-ADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR 288 (329)
T ss_dssp EE-EETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSS
T ss_pred EE-EECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCC
Confidence 55 46667899999997 7766665 234567899999 544444331 1124589999999998888873
Q ss_pred CC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013884 279 AE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 318 (434)
Q Consensus 279 ~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~ 318 (434)
.+ .+..++++|||..+++... ++.|++|+.+|..
T Consensus 289 ~~~~~p~~ia~~~dG~lyvad~~------~~~I~~~~~~~~~ 324 (329)
T 3fvz_A 289 KHFDMPHDIVASEDGTVYIGDAH------TNTVWKFTLTEKM 324 (329)
T ss_dssp SCCSSEEEEEECTTSEEEEEESS------SCCEEEEEEEECS
T ss_pred CccCCeeEEEECCCCCEEEEECC------CCEEEEEeCCccc
Confidence 22 4566999999966666665 8999999998753
No 180
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.53 E-value=1e-12 Score=137.61 Aligned_cols=250 Identities=9% Similarity=0.012 Sum_probs=150.2
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-Ce---------
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NE--------- 71 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~--------- 71 (434)
+.+++|||||++|+......+.++..|+|||+.+|+.+....... .....+.|||||+.|++... ..
T Consensus 123 ~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~---~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~ 199 (695)
T 2bkl_A 123 LGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG---GKYATPKWTPDSKGFYYEWLPTDPSIKVDERP 199 (695)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC---CTTCCCEECTTSSEEEEEECCCCTTSCGGGGG
T ss_pred EEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCc---ccccceEEecCCCEEEEEEecCCCCCccccCC
Confidence 467899999999997775556667899999999998641101111 11137899999999888743 33
Q ss_pred ----EEEEeCCCCCCc--eeeeee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc
Q 013884 72 ----IQFFDTTDFPKG--ILYRLR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS 143 (434)
Q Consensus 72 ----i~v~~~~~~~~~--~~~~~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~ 143 (434)
|.+|++...... ...... ...+..+.|||++ ..+++..... .....|.+++.+. + ....+......
T Consensus 200 ~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~-~~~~~l~~~~~~~---~-~~~~l~~~~~~ 273 (695)
T 2bkl_A 200 GYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG-KYLFVYILRG-WSENDVYWKRPGE---K-DFRLLVKGVGA 273 (695)
T ss_dssp GGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTS-CCEEEEEEET-TTEEEEEEECTTC---S-SCEEEEECSSC
T ss_pred CCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCC-CEEEEEEeCC-CCceEEEEEcCCC---C-ceEEeecCCCc
Confidence 999998765421 111111 1357789999995 4454433221 1223555554433 2 33444444444
Q ss_pred eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCce---eeeecCC-CCCeEEEEECcCCCEEEEEEccCCC
Q 013884 144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE---GLVPLRK-EGPVHDVQWSYSGSEFAVVYGFMPA 219 (434)
Q Consensus 144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~---~~v~l~~-~~~i~~~~wspdg~~~av~~g~~~~ 219 (434)
.....| ++|. +++.+. .+. +...|+.++..+... ..+.... ...+.+++|+ + ..+++ +...++
T Consensus 274 ~~~~~~-~~g~-l~~~s~--~~~------~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~-~~lv~-~~~~dg 340 (695)
T 2bkl_A 274 KYEVHA-WKDR-FYVLTD--EGA------PRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-G-GHLSL-EYLKDA 340 (695)
T ss_dssp CEEEEE-ETTE-EEEEEC--TTC------TTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-T-TEEEE-EEEETT
T ss_pred eEEEEe-cCCc-EEEEEC--CCC------CCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-C-CEEEE-EEEECC
Confidence 555666 6777 665532 111 223577777654321 2222222 4467888998 4 44544 345566
Q ss_pred eEEEE--eccceeEEEc--C-CcCeeEEEECCCCCeEEEEe-cCCCCCeEEEEEccCCEE
Q 013884 220 SATIF--NKKCRPILEL--G-SGPYNTVRWNPKGKFLCLAG-FGNLPGDMAFWDYVDGKQ 273 (434)
Q Consensus 220 ~i~l~--d~~~~~~~~~--~-~~~~~~i~~sP~g~~l~~~~-~~~~~g~i~iwd~~~~~~ 273 (434)
..+|| ++.+..+..+ + .+.+..+.++|+|+.|++.. .....++|++||+.+++.
T Consensus 341 ~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 341 TSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 55555 5556555544 3 55677889999998666543 223467999999988753
No 181
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.52 E-value=1.6e-11 Score=124.80 Aligned_cols=301 Identities=13% Similarity=0.068 Sum_probs=187.4
Q ss_pred CCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCC--CCCCcee
Q 013884 9 RVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT--DFPKGIL 85 (434)
Q Consensus 9 P~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~--~~~~~~~ 85 (434)
|.+.++++.. .++.|.|+|..+++.+.++... .....+.|||||++++.+. ++.|.+||+. +.. ..
T Consensus 165 ~~~~~~V~~~-----~~~~V~viD~~t~~v~~~i~~g----~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~--~v 233 (567)
T 1qks_A 165 LENLFSVTLR-----DAGQIALIDGSTYEIKTVLDTG----YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT--TV 233 (567)
T ss_dssp GGGEEEEEET-----TTTEEEEEETTTCCEEEEEECS----SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC--EE
T ss_pred CCceEEEEeC-----CCCeEEEEECCCCeEEEEEeCC----CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc--Ee
Confidence 4344555544 6789999999999999888654 2333789999999888764 5799999985 432 33
Q ss_pred eeeec-CCeeEEEEe----CCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc----------c-ceeEEEE
Q 013884 86 YRLRV-PGVAAFEVS----KAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR----------C-STVQLNW 149 (434)
Q Consensus 86 ~~~~~-~~v~~~~~s----p~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~----------~-~~~~~~w 149 (434)
.++.. .....+++| |++ .++.+.. ..++.|.+++..+ .+++....... . ....+..
T Consensus 234 ~~i~~G~~P~~ia~s~~~~pDG-k~l~v~n----~~~~~v~ViD~~t---~~~~~~i~~~~~~~~~~~~~p~~rva~i~~ 305 (567)
T 1qks_A 234 AEIKIGSEARSIETSKMEGWED-KYAIAGA----YWPPQYVIMDGET---LEPKKIQSTRGMTYDEQEYHPEPRVAAILA 305 (567)
T ss_dssp EEEECCSEEEEEEECCSTTCTT-TEEEEEE----EETTEEEEEETTT---CCEEEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred EEEecCCCCceeEEccccCCCC-CEEEEEE----ccCCeEEEEECCC---CcEEEEEeccccccccccccCCCceEEEEE
Confidence 44443 246788999 574 4433321 2346889999877 55555544221 1 3345667
Q ss_pred CCCCCeEEEEEEecccccCceeecceeEEEEeeCCCc-eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc
Q 013884 150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC 228 (434)
Q Consensus 150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~ 228 (434)
++++..+++.. ..++ .++.++..... .....+......+++.|+|||++|++.. ....+|.++|++.
T Consensus 306 s~~~~~~vv~~----~~~g-------~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~-~~sn~V~ViD~~t 373 (567)
T 1qks_A 306 SHYRPEFIVNV----KETG-------KILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAA-NARNKLVVIDTKE 373 (567)
T ss_dssp CSSSSEEEEEE----TTTT-------EEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEE-GGGTEEEEEETTT
T ss_pred cCCCCEEEEEe----cCCC-------eEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEe-CCCCeEEEEECCC
Confidence 77766544321 1122 24445433221 1111223345678999999999998754 4467999999975
Q ss_pred eeEE-E--c-CCcCe--eEE-EECCCCCeE-EEEecCCCCCeEEEEEccC-------CEEEEEeeCC--CceEEEECCCC
Q 013884 229 RPIL-E--L-GSGPY--NTV-RWNPKGKFL-CLAGFGNLPGDMAFWDYVD-------GKQLGTTRAE--CSVTSEWSPDG 291 (434)
Q Consensus 229 ~~~~-~--~-~~~~~--~~i-~~sP~g~~l-~~~~~~~~~g~i~iwd~~~-------~~~i~~~~~~--~~~~~~wspdg 291 (434)
..+. . . +..+. ..+ .++|++..+ +++..+ +++|.++|..+ .+.+.++... ....+..+|||
T Consensus 374 ~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g--~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~ 451 (567)
T 1qks_A 374 GKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMG--DDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNS 451 (567)
T ss_dssp TEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSS--SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTC
T ss_pred CcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCC--CCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCC
Confidence 4432 2 2 21121 122 368985544 444433 26999999987 6777777653 33458899999
Q ss_pred CEEEEEEc-CCceeeCCcEEEEeecCc-----e-e-eeee----------cccceeeEEEcCCCCCCCC
Q 013884 292 RYFMTATT-APRLQIDNGIKIFHHNGS-----L-F-FKKM----------FDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 292 ~~l~tas~-~~rl~~D~~i~iw~~~g~-----~-~-~~~~----------~~~~~~~~w~p~~~~~~~~ 342 (434)
++|.+... .|...+.++|.|+|.... . . .... -....++.|.|++..++-.
T Consensus 452 ~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s 520 (567)
T 1qks_A 452 QYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFS 520 (567)
T ss_dssp SEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEE
T ss_pred CeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEE
Confidence 99998763 343334579999998533 1 1 1121 1357888899988877654
No 182
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.52 E-value=6.3e-12 Score=132.61 Aligned_cols=286 Identities=9% Similarity=-0.016 Sum_probs=160.1
Q ss_pred ecCCCcEEEEEecCCCCCCCcEEEEEcC---CCcEEEEEeecC----cCCCCCCeeeecCCCcEEEEecC------CeEE
Q 013884 7 CLRVGLIIQTFQKSSTPQEKNVILWKTE---TGEAVYQLFQKN----MTKTTWPSIRFSSDEAVACRMAT------NEIQ 73 (434)
Q Consensus 7 fSP~g~~L~t~~~~~~~~d~~v~iWd~~---~g~~~~~~~~~~----~~~~~~~~~~~S~d~~~la~~~~------~~i~ 73 (434)
++|||++++......+.....|.+.+.. .++. ..+...+ .+...+..+.|||||++||++.+ .+|+
T Consensus 114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~ 192 (741)
T 1yr2_A 114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKG-RVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVK 192 (741)
T ss_dssp CEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCC-EEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEE
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCC-EEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEE
Confidence 4699999997764322222344555554 4433 2221110 00113447899999999998743 2799
Q ss_pred EEeCCCCCCceeeeeecCCe--eEEEEeCCCCCeEEEEecCCC---------CCCceEEEEEcCCCCCCCc--eeeeeec
Q 013884 74 FFDTTDFPKGILYRLRVPGV--AAFEVSKAPGSHVAVFVPESK---------GSPASVQIYACGKDLQSQP--LARRSFF 140 (434)
Q Consensus 74 v~~~~~~~~~~~~~~~~~~v--~~~~~sp~~~~~ia~~~~~~~---------~~~~~v~i~~~~~~~~~~~--i~~~~~~ 140 (434)
+||+..... .......+ ..++|||+ . .+++...... +.+..|.+|++.+ ... .......
T Consensus 193 v~dl~tg~~---~~~~~~~~~~~~~~wspD-~-~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt---~~~~~~lv~~~~ 264 (741)
T 1yr2_A 193 FVGVADGKP---LADELKWVKFSGLAWLGN-D-ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGT---PQSADQPVFATP 264 (741)
T ss_dssp EEETTTCCE---EEEEEEEEESCCCEESTT-S-EEEEEECCCC--------CCCCCEEEEEETTS---CGGGCEEEECCT
T ss_pred EEECCCCCC---CCccCCCceeccEEEECC-C-EEEEEEecCcccccccccCCCCCEEEEEECCC---CchhCEEEeccC
Confidence 999987553 22222333 57899998 4 4433322211 1255788999865 221 1111111
Q ss_pred --ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCC--c-eeeeecCCCCCeEEEEECcCCCEEEEEEc
Q 013884 141 --RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT--H-EGLVPLRKEGPVHDVQWSYSGSEFAVVYG 215 (434)
Q Consensus 141 --~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~--~-~~~v~l~~~~~i~~~~wspdg~~~av~~g 215 (434)
......+.|+|||++|++......+ +...||+++..+. . ...+... ...+... ++|+|+.|++.+.
T Consensus 265 ~~~~~~~~~~~SpDG~~l~~~~~~~~~-------~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~~~-~~~dg~~l~~~s~ 335 (741)
T 1yr2_A 265 ELPKRGHGASVSSDGRWVVITSSEGTD-------PVNTVHVARVTNGKIGPVTALIPD-LKAQWDF-VDGVGDQLWFVSG 335 (741)
T ss_dssp TCTTCEEEEEECTTSCEEEEEEECTTC-------SCCEEEEEEEETTEECCCEEEECS-SSSCEEE-EEEETTEEEEEEC
T ss_pred CCCeEEEEEEECCCCCEEEEEEEccCC-------CcceEEEEECCCCCCcccEEecCC-CCceEEE-EeccCCEEEEEEC
Confidence 1235788999999998876532211 2335777777654 2 2222222 2334444 3499999998764
Q ss_pred cC--CCeEEEEeccc--eeEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEE--EccCCEEEEEeeC--C-Cce
Q 013884 216 FM--PASATIFNKKC--RPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW--DYVDGKQLGTTRA--E-CSV 283 (434)
Q Consensus 216 ~~--~~~i~l~d~~~--~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iw--d~~~~~~i~~~~~--~-~~~ 283 (434)
.. ...|.+||+.. .....+ +...+..+.|+ ++.++++.. .+|...|| |+ +++.+..+.. . .+.
T Consensus 336 ~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~---~dg~~~l~~~~~-~g~~~~~l~~~~~~~v~ 410 (741)
T 1yr2_A 336 DGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYI---HDAKSQVLAFDL-DGKPAGAVSLPGIGSAS 410 (741)
T ss_dssp TTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEE---ETTEEEEEEEET-TSCEEEECBCSSSCEEE
T ss_pred CCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEE---ECCEEEEEEEeC-CCCceeeccCCCCeEEE
Confidence 32 34799999865 233332 23345567777 445555554 23455554 54 3444554442 2 344
Q ss_pred EEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884 284 TSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 284 ~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~ 317 (434)
.+.|+|||..|+...++.. ..+.|++||+.+.
T Consensus 411 ~~~~s~d~~~l~~~~ss~~--~P~~i~~~d~~tg 442 (741)
T 1yr2_A 411 GLSGRPGDRHAYLSFSSFT--QPATVLALDPATA 442 (741)
T ss_dssp EEECCBTCSCEEEEEEETT--EEEEEEEEETTTT
T ss_pred EeecCCCCCEEEEEEcCCC--CCCEEEEEECCCC
Confidence 5899999987665443211 1578999998553
No 183
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.50 E-value=1.2e-11 Score=130.44 Aligned_cols=253 Identities=11% Similarity=0.059 Sum_probs=152.1
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-C----------
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-N---------- 70 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~---------- 70 (434)
+.+++|||||++|+......+.+...|+|||+.+|+.+...... .....+.|||| +.|++... +
T Consensus 165 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~----~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~ 239 (741)
T 1yr2_A 165 LDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKW----VKFSGLAWLGN-DALLYSRFAEPKEGQAFQAL 239 (741)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEE----EESCCCEESTT-SEEEEEECCCC--------C
T ss_pred EEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCC----ceeccEEEECC-CEEEEEEecCcccccccccC
Confidence 45789999999999877443333367999999999876542221 11226899999 88887642 2
Q ss_pred ----eEEEEeCCCCCCceeeeeec----CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc
Q 013884 71 ----EIQFFDTTDFPKGILYRLRV----PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC 142 (434)
Q Consensus 71 ----~i~v~~~~~~~~~~~~~~~~----~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~ 142 (434)
.|.+|++............. ..+..+.|||+ +..+++...........|.+|++.... ......+.....
T Consensus 240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpD-G~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~l~~~~~ 317 (741)
T 1yr2_A 240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSD-GRWVVITSSEGTDPVNTVHVARVTNGK-IGPVTALIPDLK 317 (741)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTT-SCEEEEEEECTTCSCCEEEEEEEETTE-ECCCEEEECSSS
T ss_pred CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCC-CCEEEEEEEccCCCcceEEEEECCCCC-CcccEEecCCCC
Confidence 48899986543211111111 13778999999 556655544332235688899886510 021333333333
Q ss_pred ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCC--ceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCe
Q 013884 143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT--HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPAS 220 (434)
Q Consensus 143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~--~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~ 220 (434)
..... |+++|+.|++.+..+ . ....|+.++..+. .-..+.-.....+.+++|+ +..+++. ...++.
T Consensus 318 ~~~~~-~~~dg~~l~~~s~~~--~------~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~-~~~dg~ 385 (741)
T 1yr2_A 318 AQWDF-VDGVGDQLWFVSGDG--A------PLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFAS-YIHDAK 385 (741)
T ss_dssp SCEEE-EEEETTEEEEEECTT--C------TTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEE-EEETTE
T ss_pred ceEEE-EeccCCEEEEEECCC--C------CCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEE-EEECCE
Confidence 33333 458999988764321 1 1224777776552 1122222234456678887 4455553 445665
Q ss_pred E--EEEeccceeEEEc---CCcCeeEEEECCCCCeEEEE-ecCCCCCeEEEEEccCCEE
Q 013884 221 A--TIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLA-GFGNLPGDMAFWDYVDGKQ 273 (434)
Q Consensus 221 i--~l~d~~~~~~~~~---~~~~~~~i~~sP~g~~l~~~-~~~~~~g~i~iwd~~~~~~ 273 (434)
. .++|+.+.....+ +.+.+..+.++|+|+.|+.. +.....++|++||+.+++.
T Consensus 386 ~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 386 SQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred EEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 4 4556656555544 25667889999999866543 2223468999999998863
No 184
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.49 E-value=1.6e-12 Score=135.17 Aligned_cols=250 Identities=9% Similarity=-0.021 Sum_probs=142.9
Q ss_pred eEEec--CCCcE-EEEEecCCCCCCCcEEEEEcC--C-CcEEEEEeecCc--CCCCCCeeeecCCCcEEEEecC------
Q 013884 4 LLTCL--RVGLI-IQTFQKSSTPQEKNVILWKTE--T-GEAVYQLFQKNM--TKTTWPSIRFSSDEAVACRMAT------ 69 (434)
Q Consensus 4 ~l~fS--P~g~~-L~t~~~~~~~~d~~v~iWd~~--~-g~~~~~~~~~~~--~~~~~~~~~~S~d~~~la~~~~------ 69 (434)
+..|| |||++ |+..+. .+..|.+|++. + ++ ...+..... +...+..++|||||+.|++...
T Consensus 81 ~~~~~~SPDg~~~la~~~~----~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 155 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHF----GDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEG 155 (662)
T ss_dssp CEEEECCSSSSCEEEEEBT----TTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSS
T ss_pred cceeeeecCCCeEEEEEEC----CCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCC
Confidence 34454 99999 776541 24667777765 3 44 344433100 1133447899999999988742
Q ss_pred -----CeEEEEeCCC------CCCceeee-eecCCeeEEEEeCCCCCeEEEEecCCCC---CCceEEEEEcCCCCCC--C
Q 013884 70 -----NEIQFFDTTD------FPKGILYR-LRVPGVAAFEVSKAPGSHVAVFVPESKG---SPASVQIYACGKDLQS--Q 132 (434)
Q Consensus 70 -----~~i~v~~~~~------~~~~~~~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~---~~~~v~i~~~~~~~~~--~ 132 (434)
.+|.+|++.. ... .... .....+..++|||+ +..|++......+ ....|.+|++... + .
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpD-G~~la~~~~~~~~~~~~~~~i~~~d~~~~--g~~~ 231 (662)
T 3azo_A 156 PSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPD-GRQAVWLAWDHPRMPWEGTELKTARVTED--GRFA 231 (662)
T ss_dssp TTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTT-SSEEEEEEECTTCCTTTCEEEEEEEECTT--SCEE
T ss_pred CCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCC-CCEEEEEECCCCCCCCCCcEEEEEEECCC--Cccc
Confidence 3899999876 322 1111 12245677899999 5666554433222 1257999998731 3 1
Q ss_pred ceeeeee-cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCC--------CeEEEEE
Q 013884 133 PLARRSF-FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG--------PVHDVQW 203 (434)
Q Consensus 133 ~i~~~~~-~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~--------~i~~~~w 203 (434)
....+.. +......+.|+|||+ +++..+ .+. ...||.++..++....+.-.... .+..++|
T Consensus 232 ~~~~l~~~~~~~~~~~~~spdg~-l~~~~~--~~~-------~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~ 301 (662)
T 3azo_A 232 DTRTLLGGPEEAIAQAEWAPDGS-LIVATD--RTG-------WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAP 301 (662)
T ss_dssp EEEEEEEETTBCEEEEEECTTSC-EEEEEC--TTS-------SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEE
T ss_pred ccEEeCCCCCceEcceEECCCCe-EEEEEC--CCC-------CeEEEEEECCCCceeecccccccccCccccccCceEeE
Confidence 3333333 356778899999999 655432 222 22477777644322222111111 1467899
Q ss_pred CcCCCEEEEEEccCCCeEEEE--eccceeEEEc--CCcCeeEEEECCCCCeEEEEe-cCCCCCeEEEEEccCCEEEEE
Q 013884 204 SYSGSEFAVVYGFMPASATIF--NKKCRPILEL--GSGPYNTVRWNPKGKFLCLAG-FGNLPGDMAFWDYVDGKQLGT 276 (434)
Q Consensus 204 spdg~~~av~~g~~~~~i~l~--d~~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~-~~~~~g~i~iwd~~~~~~i~~ 276 (434)
+|+++.++. +.. +.+.|| |+.+..+..+ +...+..+ |+++|+.+++.. ..+....|+++|+.+++....
T Consensus 302 ~~~~~~~~~--~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 302 LANGLIAVV--HGK-GAAVLGILDPESGELVDAAGPWTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRARTI 375 (662)
T ss_dssp CTTSCEEEE--EBS-SSCEEEEEETTTTEEEECCSSCCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred eCCCEEEEE--EEc-CccEEEEEECCCCcEEEecCCCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence 999887664 344 666666 7765556655 34445544 266776544432 222335677788877765443
No 185
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.49 E-value=1.6e-11 Score=128.58 Aligned_cols=250 Identities=11% Similarity=0.089 Sum_probs=156.5
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCC-----------
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN----------- 70 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~----------- 70 (434)
|..++|||||++|+......+.+...|+|||+.+|+.+...... .....+.|| ||+.|+++..+
T Consensus 131 l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~----~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~ 205 (693)
T 3iuj_A 131 LDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD----VKFSGISWL-GNEGFFYSSYDKPDGSELSART 205 (693)
T ss_dssp EEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE----EESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred EEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC----ceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence 45679999999999776555555678999999999876542221 112267999 99988877422
Q ss_pred ---eEEEEeCCCCCCc--eeeeeec---CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc
Q 013884 71 ---EIQFFDTTDFPKG--ILYRLRV---PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC 142 (434)
Q Consensus 71 ---~i~v~~~~~~~~~--~~~~~~~---~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~ 142 (434)
.|.+|++...... .+..... ..+.++.|||+ +..+++... ..+....+.++++... ......+.....
T Consensus 206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpD-g~~l~~~~~-~~~~~~~i~~~d~~~~--~~~~~~l~~~~~ 281 (693)
T 3iuj_A 206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTED-DRFLLISAA-NSTSGNRLYVKDLSQE--NAPLLTVQGDLD 281 (693)
T ss_dssp CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTT-SCEEEEEEE-SSSSCCEEEEEETTST--TCCCEEEECSSS
T ss_pred CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCC-CCEEEEEEc-cCCCCcEEEEEECCCC--CCceEEEeCCCC
Confidence 4899998764321 1111111 13678899999 455544433 2334468899998652 123334443333
Q ss_pred ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCce---eeeecCCCCCeEEEEECcCCCEEEEEEccCCC
Q 013884 143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE---GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA 219 (434)
Q Consensus 143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~---~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~ 219 (434)
..... |+++|..|++.+..+ . ....|+.+++.+... ..+. .+...+. .|+|+++.+++.+. .++
T Consensus 282 ~~~~~-~~~~g~~l~~~t~~~--~------~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~--~~s~~g~~lv~~~~-~~g 348 (693)
T 3iuj_A 282 ADVSL-VDNKGSTLYLLTNRD--A------PNRRLVTVDAANPGPAHWRDLI-PERQQVL--TVHSGSGYLFAEYM-VDA 348 (693)
T ss_dssp SCEEE-EEEETTEEEEEECTT--C------TTCEEEEEETTSCCGGGCEEEE-CCCSSCE--EEEEETTEEEEEEE-ETT
T ss_pred ceEEE-EeccCCEEEEEECCC--C------CCCEEEEEeCCCCCccccEEEe-cCCCCEE--EEEEECCEEEEEEE-ECC
Confidence 33333 788899988765432 1 123477777665422 2222 2233333 89999999887543 344
Q ss_pred --eEEEEeccceeEEEc---CCcCeeEEEECCCCCeEEEEecC-CCCCeEEEEEccCCEE
Q 013884 220 --SATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFG-NLPGDMAFWDYVDGKQ 273 (434)
Q Consensus 220 --~i~l~d~~~~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~-~~~g~i~iwd~~~~~~ 273 (434)
.|.+||+++.....+ +.+.+..+.++|+++.|++...+ ...++|+.||+.+++.
T Consensus 349 ~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 349 TARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred eeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 788999987665554 23456677889999876655322 2457999999987753
No 186
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.48 E-value=2.1e-11 Score=112.73 Aligned_cols=230 Identities=12% Similarity=0.114 Sum_probs=141.3
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecC---cCCCCCCeeee-cCCCcEEEEec--CCeEEEE
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKN---MTKTTWPSIRF-SSDEAVACRMA--TNEIQFF 75 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~---~~~~~~~~~~~-S~d~~~la~~~--~~~i~v~ 75 (434)
+.+|+|+|+|+++++-. .++.|.+||.. ++.+..+.... .+......+++ .+++.++++.. ++.|.+|
T Consensus 32 p~~v~~~~~g~l~v~~~-----~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 32 PSGVAVNAQNDIIVADT-----NNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp EEEEEECTTCCEEEEEG-----GGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CceEEECCCCCEEEEEC-----CCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 46899999999888755 56889999976 77777664321 01122337788 57888777763 6799999
Q ss_pred eCCCCCCceeeeee---cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC
Q 013884 76 DTTDFPKGILYRLR---VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG 152 (434)
Q Consensus 76 ~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~ 152 (434)
+... . ....+. ...+..++++|++. .+. .+. ..+.|.+ |+++
T Consensus 106 d~~g-~--~~~~~~~~~~~~~~~i~~~~~g~-l~v---~~~--~~~~i~~--------------------------~~~~ 150 (286)
T 1q7f_A 106 NQYG-Q--FVRKFGATILQHPRGVTVDNKGR-IIV---VEC--KVMRVII--------------------------FDQN 150 (286)
T ss_dssp CTTS-C--EEEEECTTTCSCEEEEEECTTSC-EEE---EET--TTTEEEE--------------------------ECTT
T ss_pred CCCC-c--EEEEecCccCCCceEEEEeCCCC-EEE---EEC--CCCEEEE--------------------------EcCC
Confidence 8432 2 111221 12344555555421 111 000 0112222 2222
Q ss_pred CCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeE
Q 013884 153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI 231 (434)
Q Consensus 153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~ 231 (434)
|+.+. .+.. .....+..++++|+|+.++ +...++.|.+||.++..+
T Consensus 151 g~~~~-------------------------------~~~~~~~~~~p~~i~~~~~g~l~v--~~~~~~~i~~~~~~g~~~ 197 (286)
T 1q7f_A 151 GNVLH-------------------------------KFGCSKHLEFPNGVVVNDKQEIFI--SDNRAHCVKVFNYEGQYL 197 (286)
T ss_dssp SCEEE-------------------------------EEECTTTCSSEEEEEECSSSEEEE--EEGGGTEEEEEETTCCEE
T ss_pred CCEEE-------------------------------EeCCCCccCCcEEEEECCCCCEEE--EECCCCEEEEEcCCCCEE
Confidence 22111 0100 1123578999999987444 455678999999988777
Q ss_pred EEcCC----cCeeEEEECCCCCeEEEEecCCCCC-eEEEEEccCCEEEEEeeCC----CceEEEECCCCCEEEEEEcCCc
Q 013884 232 LELGS----GPYNTVRWNPKGKFLCLAGFGNLPG-DMAFWDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPR 302 (434)
Q Consensus 232 ~~~~~----~~~~~i~~sP~g~~l~~~~~~~~~g-~i~iwd~~~~~~i~~~~~~----~~~~~~wspdg~~l~tas~~~r 302 (434)
..+.. .....|+++|+|+++++.. .++ .|.+||.. ++.+..+..+ .+..++++|||+.+++ +.
T Consensus 198 ~~~~~~g~~~~p~~i~~d~~G~l~v~~~---~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~--- 269 (286)
T 1q7f_A 198 RQIGGEGITNYPIGVGINSNGEILIADN---HNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVLA-SK--- 269 (286)
T ss_dssp EEESCTTTSCSEEEEEECTTCCEEEEEC---SSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ET---
T ss_pred EEEccCCccCCCcEEEECCCCCEEEEeC---CCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECCCCcEEEE-CC---
Confidence 66632 4568899999998776654 223 89999964 5555544332 3456999999986666 56
Q ss_pred eeeCCcEEEEeecC
Q 013884 303 LQIDNGIKIFHHNG 316 (434)
Q Consensus 303 l~~D~~i~iw~~~g 316 (434)
|+.|+||++..
T Consensus 270 ---~~~v~v~~~~~ 280 (286)
T 1q7f_A 270 ---DYRLYIYRYVQ 280 (286)
T ss_dssp ---TTEEEEEECSC
T ss_pred ---CCeEEEEEccc
Confidence 99999999754
No 187
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.47 E-value=3.1e-10 Score=109.53 Aligned_cols=277 Identities=8% Similarity=0.007 Sum_probs=163.1
Q ss_pred EecCCCcEEEEEecCCCCCCC--cEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----------CCeE
Q 013884 6 TCLRVGLIIQTFQKSSTPQEK--NVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----------TNEI 72 (434)
Q Consensus 6 ~fSP~g~~L~t~~~~~~~~d~--~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----------~~~i 72 (434)
..+|+++++...... ..+. .|.++|..+++.+.++... ..+.+.+||||++++... ++.|
T Consensus 27 ~~~~~~~~~yv~~~~--~~~~~~~v~v~D~~t~~~~~~i~~g-----~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v 99 (373)
T 2mad_H 27 APGADGRRSYINLPA--HHSAIIQQWVLDAGSGSILGHVNGG-----FLPNPVAAHSGSEFALASTSFSRIAKGKRTDYV 99 (373)
T ss_pred cCCCCCCEEEEeCCc--ccCCccEEEEEECCCCeEEEEecCC-----CCCCeEECCCCCEEEEEeccccccccCCCCCeE
Confidence 356889887765520 0111 8899999999988777543 223789999999988774 4689
Q ss_pred EEEeCCCCCCceeeeeec---------CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee-eeeccc
Q 013884 73 QFFDTTDFPKGILYRLRV---------PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR-RSFFRC 142 (434)
Q Consensus 73 ~v~~~~~~~~~~~~~~~~---------~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~-~~~~~~ 142 (434)
.+||...... ...+.. ..-..+.|||++ ..+.+... .....|.+++ .+ ++.+.. .....
T Consensus 100 ~viD~~t~~~--~~~i~~~~~~~~~~g~~p~~~~~spDG-~~l~v~n~---~~~~~v~viD-~t---~~~~~~~i~~~~- 168 (373)
T 2mad_H 100 EVFDPVTFLP--IADIELPDAPRFDVGPYSWMNANTPNN-ADLLFFQF---AAGPAVGLVV-QG---GSSDDQLLSSPT- 168 (373)
T ss_pred EEEECCCCcE--EEEEECCCccccccCCCccceEECCCC-CEEEEEec---CCCCeEEEEE-CC---CCEEeEEcCCCc-
Confidence 9999876543 222222 224578999995 44433221 1135789999 76 555544 32211
Q ss_pred ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec----CCCCCe-EEEEECcCCCEEEEEEccC
Q 013884 143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL----RKEGPV-HDVQWSYSGSEFAVVYGFM 217 (434)
Q Consensus 143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l----~~~~~i-~~~~wspdg~~~av~~g~~ 217 (434)
++...++|...++.... |. .+..++..+........ ....++ ....+.+++..+++++ .
T Consensus 169 ---~~~~~~~~~~~~~~~~~--dg---------~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~--~ 232 (373)
T 2mad_H 169 ---CYHIHPGAPSTFYLLCA--QG---------GLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV--Y 232 (373)
T ss_pred ---eEEEEeCCCceEEEEcC--CC---------CEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEc--C
Confidence 12333444433322111 11 11222221111101100 112232 2356778777766644 3
Q ss_pred CCeEEEEecccee---EEEc--C----------CcCeeEEEECCCCCeEEEEecCC-------CCCeEEEEEccCCEEEE
Q 013884 218 PASATIFNKKCRP---ILEL--G----------SGPYNTVRWNPKGKFLCLAGFGN-------LPGDMAFWDYVDGKQLG 275 (434)
Q Consensus 218 ~~~i~l~d~~~~~---~~~~--~----------~~~~~~i~~sP~g~~l~~~~~~~-------~~g~i~iwd~~~~~~i~ 275 (434)
.+.+.+.|+.... +..+ . ......+.++|+|+.+.++.... ..+.|.++|+.+++.+.
T Consensus 233 ~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~ 312 (373)
T 2mad_H 233 SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS 312 (373)
T ss_pred CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEE
Confidence 5688888885331 1111 1 12234478999999877764310 13589999999999988
Q ss_pred EeeCC-CceEEEECCCCC-EEEEEEcCCceeeCCcEEEEeec-Cceeee
Q 013884 276 TTRAE-CSVTSEWSPDGR-YFMTATTAPRLQIDNGIKIFHHN-GSLFFK 321 (434)
Q Consensus 276 ~~~~~-~~~~~~wspdg~-~l~tas~~~rl~~D~~i~iw~~~-g~~~~~ 321 (434)
.+... ....++|+|||+ .++++... ++.|.|+|.. ++.+..
T Consensus 313 ~i~~g~~p~~i~~s~Dg~~~l~v~~~~-----~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 313 QISLGHDVDAISVAQDGGPDLYALSAG-----TEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEECCCCcCeEEECCCCCeEEEEEcCC-----CCeEEEEECCCCCEEee
Confidence 88654 577799999999 66666532 8999999985 455443
No 188
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.42 E-value=1.4e-10 Score=113.18 Aligned_cols=288 Identities=8% Similarity=0.013 Sum_probs=174.7
Q ss_pred cCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----------CCeEEEEe
Q 013884 8 LRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----------TNEIQFFD 76 (434)
Q Consensus 8 SP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----------~~~i~v~~ 76 (434)
.|+++++...........+.|.+.|+.+++.+.++.... .+.+.+|||+++++.+. ++.|.++|
T Consensus 81 ~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~-----~Pgia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD 155 (426)
T 3c75_H 81 APDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF-----LPHPVAAEDGSFFAQASTVFERIARGKRTDYVEVFD 155 (426)
T ss_dssp CCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS-----SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC-----CCceEECCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence 367887776662111001689999999999999987643 23789999999777653 46899999
Q ss_pred CCCCCCceeeeeecC---------CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc-----
Q 013884 77 TTDFPKGILYRLRVP---------GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC----- 142 (434)
Q Consensus 77 ~~~~~~~~~~~~~~~---------~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~----- 142 (434)
...... ...+... ....+.+||++ .++.+... ...+.|.++|+.+ .+.+..+.....
T Consensus 156 ~~t~~v--v~~I~v~g~~r~~~g~~P~~~~~spDG-k~lyV~n~---~~~~~VsVID~~t---~kvv~~I~v~g~~~~~p 226 (426)
T 3c75_H 156 PVTFLP--IADIELPDAPRFLVGTYQWMNALTPDN-KNLLFYQF---SPAPAVGVVDLEG---KTFDRMLDVPDCYHIFP 226 (426)
T ss_dssp TTTCCE--EEEEEETTCCCCCBSCCGGGSEECTTS-SEEEEEEC---SSSCEEEEEETTT---TEEEEEEECCSEEEEEE
T ss_pred CCCCcE--EEEEECCCccccccCCCcceEEEcCCC-CEEEEEec---CCCCeEEEEECCC---CeEEEEEEcCCceeecc
Confidence 988653 3333332 34578999995 43333211 1246799999987 566665544221
Q ss_pred --ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCe-EEEEECcCCCEEEEEEccCCC
Q 013884 143 --STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPV-HDVQWSYSGSEFAVVYGFMPA 219 (434)
Q Consensus 143 --~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i-~~~~wspdg~~~av~~g~~~~ 219 (434)
....+.++++|+.+.+.. ..++. ..... ..+.+. ..++ ..+.+++++..++++. . .+
T Consensus 227 ~g~~~~v~~~~dG~~~~V~~-----~~~~v------~~~~~------~~~~v~-~~p~~~~~~~~~dg~~~~~~s-~-~g 286 (426)
T 3c75_H 227 ASPTVFYMNCRDGSLARVDF-----ADGET------KVTNT------EVFHTE-DELLINHPAFSLRSGRLVWPT-Y-TG 286 (426)
T ss_dssp EETTEEEEEETTSSEEEEEC-----CTTCC------EEEEC------CCCSCT-TSCBCSCCEECTTTCEEEEEB-T-TS
T ss_pred CCCcEEEEEcCCCCEEEEEC-----CCCcE------EEEee------eeeccC-CCceeeEeeecCCCCEEEEEe-C-CC
Confidence 111234455555433321 01110 00000 011111 1222 2467899999888753 3 56
Q ss_pred eEEEEeccceeEEEcC---------------CcCeeEEEECCCCCeEEEEecCC-------CCCeEEEEEccCCEEEEEe
Q 013884 220 SATIFNKKCRPILELG---------------SGPYNTVRWNPKGKFLCLAGFGN-------LPGDMAFWDYVDGKQLGTT 277 (434)
Q Consensus 220 ~i~l~d~~~~~~~~~~---------------~~~~~~i~~sP~g~~l~~~~~~~-------~~g~i~iwd~~~~~~i~~~ 277 (434)
.+.+.|.....+.... ......++++|+|+.++++.... ..+.|.++|+.+++.+..+
T Consensus 287 ~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I 366 (426)
T 3c75_H 287 KIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKI 366 (426)
T ss_dssp EEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE
T ss_pred cEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEE
Confidence 8999998543322111 11223479999999777764210 1247999999999998888
Q ss_pred eCC-CceEEEECCCCC-EEEEEEcCCceeeCCcEEEEee-cCceeeee-ecccceeeEEEc
Q 013884 278 RAE-CSVTSEWSPDGR-YFMTATTAPRLQIDNGIKIFHH-NGSLFFKK-MFDKLFQAEWKP 334 (434)
Q Consensus 278 ~~~-~~~~~~wspdg~-~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~-~~~~~~~~~w~p 334 (434)
... ....++|+|||+ +++++... ++.|.|+|. +++.+... ....-..+...|
T Consensus 367 ~vg~~P~gia~spDg~~~lyv~n~~-----s~~VsVID~~t~kvv~tI~~vG~~P~~i~~~ 422 (426)
T 3c75_H 367 ELGHEIDSINVSQDAEPLLYALSAG-----TQTLHIYDAATGEELRSVDQLGRGPQIITTH 422 (426)
T ss_dssp EEEEEECEEEECCSSSCEEEEEETT-----TTEEEEEETTTCCEEEEECCCSSSCCEEECC
T ss_pred ECCCCcCeEEEccCCCEEEEEEcCC-----CCeEEEEECCCCCEEEEecCCCCCCcEEEcC
Confidence 654 467799999999 88887743 899999998 55555553 334333343333
No 189
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.39 E-value=6.9e-10 Score=104.80 Aligned_cols=243 Identities=10% Similarity=0.003 Sum_probs=141.4
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-----CeEEEEe
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-----NEIQFFD 76 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-----~~i~v~~ 76 (434)
+.+++|+|+|+.+++.. .++.|.+||..+++....+.... ..+.++.|++||++++.... +.|.+|+
T Consensus 47 ~~~~~~~~~g~l~~~~~-----~~~~i~~~d~~~~~~~~~~~~~~---~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d 118 (333)
T 2dg1_A 47 LEGLNFDRQGQLFLLDV-----FEGNIFKINPETKEIKRPFVSHK---ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT 118 (333)
T ss_dssp EEEEEECTTSCEEEEET-----TTCEEEEECTTTCCEEEEEECSS---SSEEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred ccCcEECCCCCEEEEEC-----CCCEEEEEeCCCCcEEEEeeCCC---CCcceEEECCCCcEEEEeCCCCCCCceEEEEe
Confidence 35789999999776655 56889999998887654332221 44558999999998877644 4899999
Q ss_pred CCCCCCceeee--eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013884 77 TTDFPKGILYR--LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST 154 (434)
Q Consensus 77 ~~~~~~~~~~~--~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~ 154 (434)
........... .....+..+.++|++...++. ...........||.+... ...+............+.|+|+|+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~--~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~i~~~~dg~ 194 (333)
T 2dg1_A 119 ENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTD--FRGYSTNPLGGVYYVSPD--FRTVTPIIQNISVANGIALSTDEK 194 (333)
T ss_dssp TTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEE--CCCBTTBCCEEEEEECTT--SCCEEEEEEEESSEEEEEECTTSS
T ss_pred CCCCEEEEEEccCccCCcccceEECCCCCEEEEe--ccccccCCCceEEEEeCC--CCEEEEeecCCCcccceEECCCCC
Confidence 87643211111 112357889999985322221 110011123345555331 122222222223456789999999
Q ss_pred eEEEEEEecccccCceeecceeEEEEeeC--CCcee----e--eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEec
Q 013884 155 GLLAVAQSDVDKTNQSYYGESKLNYLTTD--GTHEG----L--VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK 226 (434)
Q Consensus 155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~--~~~~~----~--v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~ 226 (434)
.|++.... ...|+.++.. +.... . ..+.....+..++++++|+.++ +...++.|.+||.
T Consensus 195 ~l~v~~~~-----------~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v--~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 195 VLWVTETT-----------ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYV--AMYGQGRVLVFNK 261 (333)
T ss_dssp EEEEEEGG-----------GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEE--EEETTTEEEEECT
T ss_pred EEEEEeCC-----------CCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEE--EEcCCCEEEEECC
Confidence 87664211 1124444442 22111 1 1111123567899999998665 3444679999999
Q ss_pred cceeEEEc--CCc------CeeEEEECCCCCeEEEEecCC---CCCeEEEEEcc
Q 013884 227 KCRPILEL--GSG------PYNTVRWNPKGKFLCLAGFGN---LPGDMAFWDYV 269 (434)
Q Consensus 227 ~~~~~~~~--~~~------~~~~i~~sP~g~~l~~~~~~~---~~g~i~iwd~~ 269 (434)
++..+..+ +.. .+..++|+|||+.|++++.+. ..|.|..++..
T Consensus 262 ~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 262 RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 77665555 222 578899999998777665331 12345555543
No 190
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.37 E-value=8.2e-10 Score=105.93 Aligned_cols=293 Identities=10% Similarity=0.017 Sum_probs=176.9
Q ss_pred eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----------CCeE
Q 013884 4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----------TNEI 72 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----------~~~i 72 (434)
.....|+|+.|..........++.|.+.|..+++.+.++.... . +.+.+||||++++.+. ++.|
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~---~--P~va~spDG~~lyVan~~~~r~~~G~~~~~V 111 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF---L--PNPVVADDGSFIAHASTVFSRIARGERTDYV 111 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS---S--CEEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCC---C--CcEEECCCCCEEEEEcccccccccCCCCCEE
Confidence 3457899998887763211225789999999999999887643 2 3589999999876653 4689
Q ss_pred EEEeCCCCCCceeeeeecC---------CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc-
Q 013884 73 QFFDTTDFPKGILYRLRVP---------GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC- 142 (434)
Q Consensus 73 ~v~~~~~~~~~~~~~~~~~---------~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~- 142 (434)
.+||...... ...+... .-..+.++|++ ..+.+... ...+.|.++|+.+ .+.+.++.....
T Consensus 112 sviD~~t~~v--~~~I~v~~g~r~~~g~~P~~~a~spDG-k~lyVan~---~~~~~VsVID~~t---~~vv~tI~v~g~~ 182 (386)
T 3sjl_D 112 EVFDPVTLLP--TADIELPDAPRFLVGTYPWMTSLTPDG-KTLLFYQF---SPAPAVGVVDLEG---KAFKRMLDVPDCY 182 (386)
T ss_dssp EEECTTTCCE--EEEEEETTCCCCCBSCCGGGEEECTTS-SEEEEEEC---SSSCEEEEEETTT---TEEEEEEECCSEE
T ss_pred EEEECCCCeE--EEEEECCCccccccCCCCceEEEcCCC-CEEEEEEc---CCCCeEEEEECCC---CcEEEEEECCCcc
Confidence 9999988653 2333322 35568999995 44333211 1236899999988 666666543211
Q ss_pred ------ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeE-EEEEC-cCCCEEEEEE
Q 013884 143 ------STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVH-DVQWS-YSGSEFAVVY 214 (434)
Q Consensus 143 ------~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~-~~~ws-pdg~~~av~~ 214 (434)
...-+..++||+.+.+. .+..++. + ... ...+... ..++. ...|. ++|+.+.+
T Consensus 183 ~~~P~g~~~~~~~~~DG~~~~v~----~~~~g~v------~---~~~---~~~~~~~-~~~~~~~~~~~~~dG~~~~v-- 243 (386)
T 3sjl_D 183 HIFPTAPDTFFMHCRDGSLAKVA----FGTEGTP------E---ITH---TEVFHPE-DEFLINHPAYSQKAGRLVWP-- 243 (386)
T ss_dssp EEEEEETTEEEEEETTSCEEEEE----CCSSSCC------E---EEE---CCCCSCT-TSCBCSCCEEETTTTEEEEE--
T ss_pred eeecCCCceeEEECCCCCEEEEE----CCCCCeE------E---Eee---cceeccc-cccccccceeEcCCCcEEEE--
Confidence 01113456666644332 1111111 0 000 0011111 22332 24664 67755443
Q ss_pred ccCCCeEEEEeccceeEEEcC---------------CcCeeEEEECCCCCeEEEEecC----C---CCCeEEEEEccCCE
Q 013884 215 GFMPASATIFNKKCRPILELG---------------SGPYNTVRWNPKGKFLCLAGFG----N---LPGDMAFWDYVDGK 272 (434)
Q Consensus 215 g~~~~~i~l~d~~~~~~~~~~---------------~~~~~~i~~sP~g~~l~~~~~~----~---~~g~i~iwd~~~~~ 272 (434)
.+ .+.+.++|+.+....... .+....+.++|+++.+.++... . ....|.++|+++++
T Consensus 244 s~-~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k 322 (386)
T 3sjl_D 244 TY-TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE 322 (386)
T ss_dssp BT-TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred eC-CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe
Confidence 22 579999998654321110 1233458889999988776421 0 12479999999999
Q ss_pred EEEEeeCC-CceEEEECCCCC-EEEEEEcCCceeeCCcEEEEee-cCceeeeeec-ccceeeEEEcC
Q 013884 273 QLGTTRAE-CSVTSEWSPDGR-YFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF-DKLFQAEWKPV 335 (434)
Q Consensus 273 ~i~~~~~~-~~~~~~wspdg~-~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~~~-~~~~~~~w~p~ 335 (434)
.+..+.-. .+..|++||||+ +|+++... ++.|.|+|. +++.+..... ..-.++.+.++
T Consensus 323 v~~~i~vg~~~~~lavs~D~~~~ly~tn~~-----~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 323 RLAKFEMGHEIDSINVSQDEKPLLYALSTG-----DKTLYIHDAESGEELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp EEEEEEEEEEECEEEECSSSSCEEEEEETT-----TTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred EEEEEECCCCcceEEECCCCCeEEEEEcCC-----CCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence 88887654 555799999997 66665442 899999998 6666665533 23444555443
No 191
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.34 E-value=2.2e-10 Score=119.80 Aligned_cols=248 Identities=9% Similarity=0.012 Sum_probs=149.5
Q ss_pred CCCeeeecCCCcEEEEecC------CeEEEEeCCCCCCceeeeeecCCe--eEEEEeCCCCCeEEEEecCCC--------
Q 013884 51 TWPSIRFSSDEAVACRMAT------NEIQFFDTTDFPKGILYRLRVPGV--AAFEVSKAPGSHVAVFVPESK-------- 114 (434)
Q Consensus 51 ~~~~~~~S~d~~~la~~~~------~~i~v~~~~~~~~~~~~~~~~~~v--~~~~~sp~~~~~ia~~~~~~~-------- 114 (434)
.+..+.|||||++||.+.+ .+|+|||+.+... ...+.+++ ..++|+ | +..+++......
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~---~~~~~~~~k~~~~~Ws-D-g~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQP---LETPLKDVKFSGISWL-G-NEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSE---EEEEEEEEESCCCEEE-T-TTEEEEEESSCCC-------
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCC---CccccCCceeccEEEe-C-CCEEEEEEecCccccccccc
Confidence 3446799999999997631 3899999987542 22334444 578999 7 555555443322
Q ss_pred CCCceEEEEEcCCCCC-CCceeeeee-cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec
Q 013884 115 GSPASVQIYACGKDLQ-SQPLARRSF-FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL 192 (434)
Q Consensus 115 ~~~~~v~i~~~~~~~~-~~~i~~~~~-~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l 192 (434)
+.+..|.+|++.+... ...+..... +..-...+.|+|||++|++....... ...+|++++.+.......+
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~--------~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTS--------GNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSS--------CCEEEEEETTSTTCCCEEE
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCC--------CcEEEEEECCCCCCceEEE
Confidence 4567899999866210 011221111 22235688999999998776433211 1257888765542222222
Q ss_pred C-CCCCeEEEEECcCCCEEEEEEccC--CCeEEEEeccceeE---EEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEE
Q 013884 193 R-KEGPVHDVQWSYSGSEFAVVYGFM--PASATIFNKKCRPI---LEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMA 264 (434)
Q Consensus 193 ~-~~~~i~~~~wspdg~~~av~~g~~--~~~i~l~d~~~~~~---~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~ 264 (434)
. ........ |+++|+.|++.+... ..+|..+|+..... ..+ +...+. .|+|+|++|++....+....|+
T Consensus 277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~ 353 (693)
T 3iuj_A 277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVE 353 (693)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEE
T ss_pred eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEE
Confidence 2 22333444 888999998876542 25888899864221 233 333333 9999999998877544334799
Q ss_pred EEEccCCEEEEEee--CC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884 265 FWDYVDGKQLGTTR--AE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 265 iwd~~~~~~i~~~~--~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~ 317 (434)
+||++.+.. ..+. .. .+..+.++||+..|+....++. .-..+..||+.+.
T Consensus 354 ~~d~~g~~~-~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~--tP~~l~~~d~~~g 406 (693)
T 3iuj_A 354 QFDYEGKRV-REVALPGLGSVSGFNGKHDDPALYFGFENYA--QPPTLYRFEPKSG 406 (693)
T ss_dssp EECTTSCEE-EEECCSSSSEEEECCCCTTCSCEEEEEECSS--SCCEEEEECTTTC
T ss_pred EEECCCCee-EEeecCCCceEEeeecCCCCCEEEEEecCCC--CCCEEEEEECCCC
Confidence 999886543 3332 22 3344788999988777665211 1367888887543
No 192
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.32 E-value=4.9e-09 Score=101.07 Aligned_cols=245 Identities=9% Similarity=-0.004 Sum_probs=142.1
Q ss_pred eEEecCCCcEEEEEecCC-----CCCCCcEEEEEcCCCcEEEEEeec-CcC---CCCCCeeeecCCCcEEEEec---CCe
Q 013884 4 LLTCLRVGLIIQTFQKSS-----TPQEKNVILWKTETGEAVYQLFQK-NMT---KTTWPSIRFSSDEAVACRMA---TNE 71 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~-----~~~d~~v~iWd~~~g~~~~~~~~~-~~~---~~~~~~~~~S~d~~~la~~~---~~~ 71 (434)
.++|||||++|....... +..++.|.+||+.+++.+.++... ... ...-..+.|||||++|+.+. +++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 589999999999876321 123578999999999888776542 000 01112689999999998763 368
Q ss_pred EEEEeCCCCCCceeee-eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee---ecccce---
Q 013884 72 IQFFDTTDFPKGILYR-LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS---FFRCST--- 144 (434)
Q Consensus 72 i~v~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~---~~~~~~--- 144 (434)
|.++| ..... ... +..++. +.+.|++...+....+ ++.+.+++. . ++.+.... .+ ...
T Consensus 150 v~viD-~t~~~--~~~~i~~~~~--~~~~~~~~~~~~~~~~-----dg~~~~vd~-~---g~~~~~~~~~~~~-~~~~p~ 214 (373)
T 2mad_H 150 VGLVV-QGGSS--DDQLLSSPTC--YHIHPGAPSTFYLLCA-----QGGLAKTDH-A---GGAAGAGLVGAML-TAAQNL 214 (373)
T ss_pred EEEEE-CCCCE--EeEEcCCCce--EEEEeCCCceEEEEcC-----CCCEEEEEC-C---CcEEEEEeccccc-cCCcce
Confidence 99999 76432 333 333332 3445554333322222 345666666 4 33332111 11 111
Q ss_pred -eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCcee---eeecC---------CCCCeEEEEECcCCCEEE
Q 013884 145 -VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG---LVPLR---------KEGPVHDVQWSYSGSEFA 211 (434)
Q Consensus 145 -~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~---~v~l~---------~~~~i~~~~wspdg~~~a 211 (434)
....+.+++..+++... . + .++.++..+.... .+.+. .......++++||++++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~-----~-----~--~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ly 282 (373)
T 2mad_H 215 LTQPAQANKSGRIVWPVY-----S-----G--KILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIY 282 (373)
T ss_pred eecceeEecCCEEEEEcC-----C-----c--eEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEE
Confidence 11234455554443321 0 1 2444444332111 11110 123345688999999888
Q ss_pred EEEcc--------CCCeEEEEecccee-EEEcC-CcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013884 212 VVYGF--------MPASATIFNKKCRP-ILELG-SGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQLGTT 277 (434)
Q Consensus 212 v~~g~--------~~~~i~l~d~~~~~-~~~~~-~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~~~~i~~~ 277 (434)
+.... ..+.|.++|.+... +..+. ......+.|+|||+ +++++..+ ++.|.++|+.+++.+..+
T Consensus 283 V~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~--~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 283 LLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAG--TEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCC--CCeEEEEECCCCCEEeee
Confidence 75332 13479999997544 45553 33478999999999 66666533 369999999999988773
No 193
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.32 E-value=4.9e-10 Score=107.51 Aligned_cols=259 Identities=11% Similarity=0.092 Sum_probs=146.5
Q ss_pred EEecCCCcEEEEEecCC-----CCCCCcEEEEEcCCCcEEEEEeecCc-----CCCCCCeeeecCCCcEEEEec---CCe
Q 013884 5 LTCLRVGLIIQTFQKSS-----TPQEKNVILWKTETGEAVYQLFQKNM-----TKTTWPSIRFSSDEAVACRMA---TNE 71 (434)
Q Consensus 5 l~fSP~g~~L~t~~~~~-----~~~d~~v~iWd~~~g~~~~~~~~~~~-----~~~~~~~~~~S~d~~~la~~~---~~~ 71 (434)
|.|||||++|.....+. +..++.|.+||+.+++.+.++..... ....+ .+.|||||+++.... ++.
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~-~~a~spDGk~lyVan~~~~~~ 161 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPW-MTSLTPDGKTLLFYQFSPAPA 161 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGG-GEEECTTSSEEEEEECSSSCE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCc-eEEEcCCCCEEEEEEcCCCCe
Confidence 89999999987765211 11246799999999999888754310 01233 789999999887663 479
Q ss_pred EEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-eecccce----eE
Q 013884 72 IQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-SFFRCST----VQ 146 (434)
Q Consensus 72 i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-~~~~~~~----~~ 146 (434)
|.|+|+.... ...++..++... +.|.+...+....+ ++.+-+.++... +..+... ..+..+. ..
T Consensus 162 VsVID~~t~~--vv~tI~v~g~~~--~~P~g~~~~~~~~~-----DG~~~~v~~~~~--g~v~~~~~~~~~~~~~~~~~~ 230 (386)
T 3sjl_D 162 VGVVDLEGKA--FKRMLDVPDCYH--IFPTAPDTFFMHCR-----DGSLAKVAFGTE--GTPEITHTEVFHPEDEFLINH 230 (386)
T ss_dssp EEEEETTTTE--EEEEEECCSEEE--EEEEETTEEEEEET-----TSCEEEEECCSS--SCCEEEECCCCSCTTSCBCSC
T ss_pred EEEEECCCCc--EEEEEECCCcce--eecCCCceeEEECC-----CCCEEEEECCCC--CeEEEeecceecccccccccc
Confidence 9999998854 334454444311 11221111111111 122333333220 1111111 0111000 01
Q ss_pred EEE-CCCCCeEEEEEEecccccCceeecceeEEEEeeCCCcee---eeecC---------CCCCeEEEEECcCCCEEEEE
Q 013884 147 LNW-NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG---LVPLR---------KEGPVHDVQWSYSGSEFAVV 213 (434)
Q Consensus 147 ~~w-s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~---~v~l~---------~~~~i~~~~wspdg~~~av~ 213 (434)
..| .++|+.+. .+. . | .+|.++..+.... .+.+. ..+.+..++++|+++++.+.
T Consensus 231 ~~~~~~dG~~~~-vs~-----~-----g--~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~ 297 (386)
T 3sjl_D 231 PAYSQKAGRLVW-PTY-----T-----G--KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLL 297 (386)
T ss_dssp CEEETTTTEEEE-EBT-----T-----S--EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred ceeEcCCCcEEE-EeC-----C-----C--EEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEE
Confidence 244 35665432 211 1 1 3566655443211 11100 02344458889999999886
Q ss_pred EccC--------CCeEEEEecccee-EEEcC-CcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCEEEEEeeCC-C
Q 013884 214 YGFM--------PASATIFNKKCRP-ILELG-SGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-C 281 (434)
Q Consensus 214 ~g~~--------~~~i~l~d~~~~~-~~~~~-~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~ 281 (434)
.... ...|.++|++... +..+. ......|.++|||+ +|+++.. .+++|.++|..+++.+.++... .
T Consensus 298 ~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~--~~~~VsViD~~t~k~~~~i~~~~~ 375 (386)
T 3sjl_D 298 VDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST--GDKTLYIHDAESGEELRSVNQLGH 375 (386)
T ss_dssp EEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEET--TTTEEEEEETTTCCEEEEECCCCS
T ss_pred eccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcC--CCCeEEEEECCCCcEEEEecCCCC
Confidence 5321 2379999997544 44442 34567999999998 6665543 2479999999999999988765 5
Q ss_pred ceEEEECCC
Q 013884 282 SVTSEWSPD 290 (434)
Q Consensus 282 ~~~~~wspd 290 (434)
...+.+++|
T Consensus 376 p~~l~~s~d 384 (386)
T 3sjl_D 376 GPQVITTAD 384 (386)
T ss_dssp SCCEEEECC
T ss_pred CceeEECCc
Confidence 556777877
No 194
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.31 E-value=4.7e-09 Score=96.85 Aligned_cols=216 Identities=11% Similarity=0.068 Sum_probs=140.1
Q ss_pred CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeee
Q 013884 10 VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLR 89 (434)
Q Consensus 10 ~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~ 89 (434)
.|++|++.+ .|+.|.+||.++|+.+.++..+.. .....+.++|||++++ ..++.|..||. +.. ...++.
T Consensus 4 ~~~~lv~~~-----~~~~v~~~d~~tG~~~w~~~~~~~--~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~--~~W~~~ 72 (276)
T 3no2_A 4 PQHLLVGGS-----GWNKIAIINKDTKEIVWEYPLEKG--WECNSVAATKAGEILF-SYSKGAKMITR-DGR--ELWNIA 72 (276)
T ss_dssp CCEEEEECT-----TCSEEEEEETTTTEEEEEEECCTT--CCCCEEEECTTSCEEE-ECBSEEEEECT-TSC--EEEEEE
T ss_pred CCcEEEeeC-----CCCEEEEEECCCCeEEEEeCCCcc--CCCcCeEECCCCCEEE-eCCCCEEEECC-CCC--EEEEEc
Confidence 468888866 789999999999999999876431 2345889999999998 55678888887 433 223333
Q ss_pred cC---CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccc
Q 013884 90 VP---GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDK 166 (434)
Q Consensus 90 ~~---~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~ 166 (434)
.. .+.++.+.|++..+++. . . ....-+.++++|+.+--
T Consensus 73 ~~~~~~~~~~~~~~dG~~lv~~-~---------------~---------------~~~~v~~vd~~Gk~l~~-------- 113 (276)
T 3no2_A 73 APAGCEMQTARILPDGNALVAW-C---------------G---------------HPSTILEVNMKGEVLSK-------- 113 (276)
T ss_dssp CCTTCEEEEEEECTTSCEEEEE-E---------------S---------------TTEEEEEECTTSCEEEE--------
T ss_pred CCCCccccccEECCCCCEEEEe-c---------------C---------------CCCEEEEEeCCCCEEEE--------
Confidence 21 34444555542211110 0 0 00112345566654321
Q ss_pred cCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEcC-CcCeeEEEEC
Q 013884 167 TNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG-SGPYNTVRWN 245 (434)
Q Consensus 167 ~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~~-~~~~~~i~~s 245 (434)
+...+... ......+.++..++|+.++ +...++.|..||.+++.+.++. ......+...
T Consensus 114 -------------~~~~~~~~-----~~~~~~~~v~~~~~G~~lv--~~~~~~~v~~~d~~G~~~w~~~~~~~~~~~~~~ 173 (276)
T 3no2_A 114 -------------TEFETGIE-----RPHAQFRQINKNKKGNYLV--PLFATSEVREIAPNGQLLNSVKLSGTPFSSAFL 173 (276)
T ss_dssp -------------EEECCSCS-----SGGGSCSCCEECTTSCEEE--EETTTTEEEEECTTSCEEEEEECSSCCCEEEEC
T ss_pred -------------EeccCCCC-----cccccccCceECCCCCEEE--EecCCCEEEEECCCCCEEEEEECCCCccceeEc
Confidence 11111000 0012344567889999887 4566889999999988888774 3455678889
Q ss_pred CCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--------CceEEEECCCCCEEEEEE
Q 013884 246 PKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--------CSVTSEWSPDGRYFMTAT 298 (434)
Q Consensus 246 P~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--------~~~~~~wspdg~~l~tas 298 (434)
|+|++++++.. .+.|..+|.++++.+..+... .+..+...++|..+++..
T Consensus 174 ~~g~~~v~~~~---~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 174 DNGDCLVACGD---AHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp TTSCEEEECBT---TSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred CCCCEEEEeCC---CCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 99998887663 358999999999998887532 144578899999888875
No 195
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.31 E-value=2.1e-09 Score=99.88 Aligned_cols=224 Identities=12% Similarity=0.068 Sum_probs=136.2
Q ss_pred eeeecCCCc-EEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC
Q 013884 54 SIRFSSDEA-VACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS 131 (434)
Q Consensus 54 ~~~~S~d~~-~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~ 131 (434)
.+.|+||++ ++++. .++.|.+|+.... ..........+..++++|++. +++. . .....|.+|+..+ +
T Consensus 32 g~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~-l~v~-~----~~~~~i~~~d~~~---g 100 (296)
T 3e5z_A 32 GPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGH-LIAC-S----HGLRRLERQREPG---G 100 (296)
T ss_dssp EEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCC-EEEE-E----TTTTEEEEECSTT---C
T ss_pred CCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCc-EEEE-e----cCCCeEEEEcCCC---C
Confidence 789999998 55555 4679999998764 222333345688899999853 3322 1 1235688888755 3
Q ss_pred Cceeeeeecc----cceeEEEECCCCCeEEEEEEe-cc-cc----cCceeecceeEEEEeeCCCceeeeecCCCCCeEEE
Q 013884 132 QPLARRSFFR----CSTVQLNWNRGSTGLLAVAQS-DV-DK----TNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDV 201 (434)
Q Consensus 132 ~~i~~~~~~~----~~~~~~~ws~~G~~l~~~~~~-~~-d~----~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~ 201 (434)
+......... .....+.++++|+.++. ... .. +. ....-.+...||.++..+.. ..........+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vt-d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~--~~~~~~~~~~~gi 177 (296)
T 3e5z_A 101 EWESIADSFEGKKLNSPNDVCLAPDGSLWFS-DPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTL--SAPIRDRVKPNGL 177 (296)
T ss_dssp CEEEEECEETTEECCCCCCEEECTTSCEEEE-ECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCE--EEEECCCSSEEEE
T ss_pred cEEEEeeccCCCCCCCCCCEEECCCCCEEEE-CCccccccccccccccccCCCcEEEEECCCCCE--EEeecCCCCCccE
Confidence 3221111111 12346889999984322 110 00 00 00000012257777655332 2222334567899
Q ss_pred EECcCCCEEEEEEccCCCeEEEEecc--cee-----EEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEE
Q 013884 202 QWSYSGSEFAVVYGFMPASATIFNKK--CRP-----ILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQL 274 (434)
Q Consensus 202 ~wspdg~~~av~~g~~~~~i~l~d~~--~~~-----~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i 274 (434)
+|+|||+.+ + +...++.|.+||+. +.. +...+.+....++++++|+++++. + +.|.+||.+ ++.+
T Consensus 178 ~~s~dg~~l-v-~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~---~~v~~~~~~-g~~~ 249 (296)
T 3e5z_A 178 AFLPSGNLL-V-SDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--G---DGVHVLTPD-GDEL 249 (296)
T ss_dssp EECTTSCEE-E-EETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--T---TEEEEECTT-SCEE
T ss_pred EECCCCCEE-E-EeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--C---CeEEEECCC-CCEE
Confidence 999999988 4 46667899999985 221 112234456789999999966654 3 589999986 6666
Q ss_pred EEeeCC-CceEEEE-CCCCCEEEEEEc
Q 013884 275 GTTRAE-CSVTSEW-SPDGRYFMTATT 299 (434)
Q Consensus 275 ~~~~~~-~~~~~~w-spdg~~l~tas~ 299 (434)
..+..+ .+..++| +||++.|++++.
T Consensus 250 ~~~~~~~~~~~~~f~~~d~~~L~v~t~ 276 (296)
T 3e5z_A 250 GRVLTPQTTSNLCFGGPEGRTLYMTVS 276 (296)
T ss_dssp EEEECSSCCCEEEEESTTSCEEEEEET
T ss_pred EEEECCCCceeEEEECCCCCEEEEEcC
Confidence 665543 3667899 699999998886
No 196
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.29 E-value=1.7e-09 Score=102.45 Aligned_cols=269 Identities=9% Similarity=-0.012 Sum_probs=159.9
Q ss_pred CCCCCcEEEEEcCCCcEEEEEeec-Cc--CCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeee-cCCeeEEE
Q 013884 22 TPQEKNVILWKTETGEAVYQLFQK-NM--TKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLR-VPGVAAFE 97 (434)
Q Consensus 22 ~~~d~~v~iWd~~~g~~~~~~~~~-~~--~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~-~~~v~~~~ 97 (434)
+..++.|.+||..+++....+... +. .......+.+..+.-|++...++.|.+||..++... ..+. ......++
T Consensus 13 g~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~--~~i~~~~~p~~i~ 90 (328)
T 3dsm_A 13 QYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEV--GRITGFTSPRYIH 90 (328)
T ss_dssp TSCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEE--EEEECCSSEEEEE
T ss_pred CCCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEE--EEcCCCCCCcEEE
Confidence 445889999999999876544211 00 001112455643333333335689999999876532 2232 45678889
Q ss_pred EeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc-----cceeEEEECCCCCeEEEEEEecccccCceee
Q 013884 98 VSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR-----CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYY 172 (434)
Q Consensus 98 ~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~-----~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~ 172 (434)
++|++ .+ |+... ..+.|.+++..+ .+.+....... .....+.+ ++..|++.. ...
T Consensus 91 ~~~~g--~l--yv~~~--~~~~v~~iD~~t---~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~-~~~-------- 150 (328)
T 3dsm_A 91 FLSDE--KA--YVTQI--WDYRIFIINPKT---YEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNC-WSY-------- 150 (328)
T ss_dssp EEETT--EE--EEEEB--SCSEEEEEETTT---TEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEE-CTT--------
T ss_pred EeCCC--eE--EEEEC--CCCeEEEEECCC---CeEEEEEEcCCccccCCCcceEEE--ECCEEEEEc-CCC--------
Confidence 98874 22 22211 246899999876 44444443322 02334555 456655431 100
Q ss_pred cceeEEEEeeCCCc-eeeeecCCCCCeEEEEECcCCCEEEEEEccC--------CCeEEEEeccceeE-EEc--C-CcCe
Q 013884 173 GESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM--------PASATIFNKKCRPI-LEL--G-SGPY 239 (434)
Q Consensus 173 g~~~l~~l~~~~~~-~~~v~l~~~~~i~~~~wspdg~~~av~~g~~--------~~~i~l~d~~~~~~-~~~--~-~~~~ 239 (434)
...+..++..... ...+++ ....+.++++|+|+.+++..+.. .+.|.++|.+...+ ..+ . ....
T Consensus 151 -~~~v~viD~~t~~~~~~i~~--g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p 227 (328)
T 3dsm_A 151 -QNRILKIDTETDKVVDELTI--GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWP 227 (328)
T ss_dssp -CCEEEEEETTTTEEEEEEEC--SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCC
T ss_pred -CCEEEEEECCCCeEEEEEEc--CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCc
Confidence 2245666654432 223333 33457899999998655422221 26899999874433 333 2 2357
Q ss_pred eEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE--ee--CCCceEEEECCCCCEEEEEE----cCCceeeCCcEEE
Q 013884 240 NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT--TR--AECSVTSEWSPDGRYFMTAT----TAPRLQIDNGIKI 311 (434)
Q Consensus 240 ~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~--~~--~~~~~~~~wspdg~~l~tas----~~~rl~~D~~i~i 311 (434)
+.++|+|+|++|.++. +.|.+||..+++.... +. ...+..++++|++..|.++. .. ++.|.+
T Consensus 228 ~~la~~~d~~~lyv~~-----~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~-----~~~V~v 297 (328)
T 3dsm_A 228 SEVQLNGTRDTLYWIN-----NDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQ-----QGIVYR 297 (328)
T ss_dssp EEEEECTTSCEEEEES-----SSEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSS-----EEEEEE
T ss_pred eeEEEecCCCEEEEEc-----cEEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEccccccc-----CCEEEE
Confidence 8999999999988875 2799999988765321 12 23456699999555555554 21 789999
Q ss_pred EeecCceeeeeecc
Q 013884 312 FHHNGSLFFKKMFD 325 (434)
Q Consensus 312 w~~~g~~~~~~~~~ 325 (434)
|+.+|+++......
T Consensus 298 ~d~~g~~~~~i~~G 311 (328)
T 3dsm_A 298 YSPQGKLIDEFYVG 311 (328)
T ss_dssp ECTTCCEEEEEEEE
T ss_pred ECCCCCEEEEEEec
Confidence 99999888766443
No 197
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.28 E-value=2.9e-09 Score=98.92 Aligned_cols=235 Identities=6% Similarity=-0.016 Sum_probs=140.8
Q ss_pred cceEEecCCCc-EEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCC
Q 013884 2 LLLLTCLRVGL-IIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTD 79 (434)
Q Consensus 2 V~~l~fSP~g~-~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~ 79 (434)
..++.|+|+|+ .+++.. .++.|.+||..++ +..+.... .....+.|++||+++++.. ++.|.+|+..+
T Consensus 30 ~eg~~~d~~g~~l~~~~~-----~~~~i~~~~~~~~--~~~~~~~~---~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~ 99 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDV-----RQNRTWAWSDDGQ--LSPEMHPS---HHQNGHCLNKQGHLIACSHGLRRLERQREPG 99 (296)
T ss_dssp EEEEEEEGGGTEEEEEEG-----GGTEEEEEETTSC--EEEEESSC---SSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred ccCCeEeCCCCEEEEEeC-----CCCEEEEEECCCC--eEEEECCC---CCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence 35789999999 444433 4678999998877 55554432 3344789999999888775 47999999865
Q ss_pred CCCceeeee----ecCCeeEEEEeCCCCCeEEEEec--CC---------CCCCceEEEEEcCCCCCCCceeeeeecccce
Q 013884 80 FPKGILYRL----RVPGVAAFEVSKAPGSHVAVFVP--ES---------KGSPASVQIYACGKDLQSQPLARRSFFRCST 144 (434)
Q Consensus 80 ~~~~~~~~~----~~~~v~~~~~sp~~~~~ia~~~~--~~---------~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~ 144 (434)
......... ....+..++++|++. +++. .+ .. ......-.||.+.. ...+..........
T Consensus 100 g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vt-d~~~g~~~~~~~~~~~~~~~~~~l~~~~~---~g~~~~~~~~~~~~ 174 (296)
T 3e5z_A 100 GEWESIADSFEGKKLNSPNDVCLAPDGS-LWFS-DPTYGIDKPEEGYGGEMELPGRWVFRLAP---DGTLSAPIRDRVKP 174 (296)
T ss_dssp CCEEEEECEETTEECCCCCCEEECTTSC-EEEE-ECSHHHHCGGGSSCCCCCSSSCEEEEECT---TSCEEEEECCCSSE
T ss_pred CcEEEEeeccCCCCCCCCCCEEECCCCC-EEEE-CCccccccccccccccccCCCcEEEEECC---CCCEEEeecCCCCC
Confidence 432111111 123456789999853 2221 00 00 00111225555543 22222222223344
Q ss_pred eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeC--CCc---eeeeecCCCCCeEEEEECcCCCEEEEEEccCCC
Q 013884 145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD--GTH---EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA 219 (434)
Q Consensus 145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~--~~~---~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~ 219 (434)
..+.|+|+|+.+ +.. . .+ ..++.++.. +.. ...+ ....+.+..++++++|+.++. . ++
T Consensus 175 ~gi~~s~dg~~l-v~~-~-~~---------~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~--~--~~ 237 (296)
T 3e5z_A 175 NGLAFLPSGNLL-VSD-T-GD---------NATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWAS--A--GD 237 (296)
T ss_dssp EEEEECTTSCEE-EEE-T-TT---------TEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEE--E--TT
T ss_pred ccEEECCCCCEE-EEe-C-CC---------CeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEE--c--CC
Confidence 679999999987 432 1 11 124444442 221 1111 112445678999999985552 3 67
Q ss_pred eEEEEeccceeEEEc--CCcCeeEEEE-CCCCCeEEEEecCCCCCeEEEEEccCCEE
Q 013884 220 SATIFNKKCRPILEL--GSGPYNTVRW-NPKGKFLCLAGFGNLPGDMAFWDYVDGKQ 273 (434)
Q Consensus 220 ~i~l~d~~~~~~~~~--~~~~~~~i~~-sP~g~~l~~~~~~~~~g~i~iwd~~~~~~ 273 (434)
.|.+||.+++.+..+ +.. +++++| +|+|+.|.+++.+ .+.-++.++.++
T Consensus 238 ~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~----~l~~~~~~~~~~ 289 (296)
T 3e5z_A 238 GVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST----EFWSIETNVRGL 289 (296)
T ss_dssp EEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETT----EEEEEECSCCBC
T ss_pred eEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC----eEEEEEcccccc
Confidence 999999987766555 445 888999 6999988888732 577777776543
No 198
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.28 E-value=2.4e-09 Score=97.65 Aligned_cols=235 Identities=8% Similarity=-0.009 Sum_probs=136.9
Q ss_pred ceEEecCCCcEEE-EEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013884 3 LLLTCLRVGLIIQ-TFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP 81 (434)
Q Consensus 3 ~~l~fSP~g~~L~-t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~ 81 (434)
.+|+++|+|+.++ +-. .++.|.+||..++.. ..+.... ......+.+++||+++++..++.|.+|+.....
T Consensus 27 ~~i~~~~~g~l~v~~~~-----~~~~i~~~~~~~~~~-~~~~~~~--~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 27 SGVAVDSAGNVYVTSEG-----MYGRVVKLATGSTGT-TVLPFNG--LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNN 98 (270)
T ss_dssp EEEEECTTCCEEEEECS-----SSCEEEEECC------EECCCCS--CCSCCCEEECTTCCEEEEETTTEEEEECTTCSC
T ss_pred cceEECCCCCEEEEccC-----CCCcEEEecCCCccc-ceEeeCC--cCCcceeEECCCCCEEEEcCCCEEEEEeCCCce
Confidence 5789999999776 323 467899999765543 2222111 133448899999997776667799999976533
Q ss_pred CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013884 82 KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ 161 (434)
Q Consensus 82 ~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~ 161 (434)
...........+..++++|++. . |+.+ ...+.|.+|+... ................+.++++|+ +++. .
T Consensus 99 ~~~~~~~~~~~p~~i~~~~~g~-l---~v~~--~~~~~i~~~~~~~---~~~~~~~~~~~~~p~~i~~~~~g~-l~v~-~ 167 (270)
T 1rwi_B 99 QTVLPFDGLNYPEGLAVDTQGA-V---YVAD--RGNNRVVKLAAGS---KTQTVLPFTGLNDPDGVAVDNSGN-VYVT-D 167 (270)
T ss_dssp CEECCCCSCSSEEEEEECTTCC-E---EEEE--GGGTEEEEECTTC---CSCEECCCCSCCSCCCEEECTTCC-EEEE-E
T ss_pred EeeeecCCcCCCcceEECCCCC-E---EEEE--CCCCEEEEEECCC---ceeEeeccccCCCceeEEEeCCCC-EEEE-E
Confidence 2111111224678899998743 2 2211 1134677775433 221111111112345788899987 4332 1
Q ss_pred ecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEcC---CcC
Q 013884 162 SDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG---SGP 238 (434)
Q Consensus 162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~~---~~~ 238 (434)
. +...|+.++..+.............+..++++++|..++ +...++.|.+||..+....... ...
T Consensus 168 ~----------~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v--~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 235 (270)
T 1rwi_B 168 T----------DNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYV--TEHNTNQVVKLLAGSTTSTVLPFTGLNT 235 (270)
T ss_dssp G----------GGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEE--EETTTSCEEEECTTCSCCEECCCCSCSC
T ss_pred C----------CCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEE--EECCCCcEEEEcCCCCcceeeccCCCCC
Confidence 1 112356666555432222222235678999999995444 4555678999998765544332 245
Q ss_pred eeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013884 239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 271 (434)
Q Consensus 239 ~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~ 271 (434)
...++++|+|+++++.. + ++.|.+++....
T Consensus 236 p~~i~~~~~g~l~v~~~-~--~~~v~~~~~~~~ 265 (270)
T 1rwi_B 236 PLAVAVDSDRTVYVADR-G--NDRVVKLTSLEH 265 (270)
T ss_dssp EEEEEECTTCCEEEEEG-G--GTEEEEECCCGG
T ss_pred ceeEEECCCCCEEEEEC-C--CCEEEEEcCCCc
Confidence 78899999998555544 2 369999987643
No 199
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.26 E-value=8.2e-08 Score=92.92 Aligned_cols=280 Identities=11% Similarity=0.103 Sum_probs=166.3
Q ss_pred cCCCcEEEEEecCC---CCCCCcEEEEEcCC-----CcEEEEEeecC----cCCCCC------Ceeeec--CCCcEEEEe
Q 013884 8 LRVGLIIQTFQKSS---TPQEKNVILWKTET-----GEAVYQLFQKN----MTKTTW------PSIRFS--SDEAVACRM 67 (434)
Q Consensus 8 SP~g~~L~t~~~~~---~~~d~~v~iWd~~~-----g~~~~~~~~~~----~~~~~~------~~~~~S--~d~~~la~~ 67 (434)
.|..+++.+|.-+. +..-..|.+-|+.. |+.++...... .|...| .++.++ .+.++|...
T Consensus 22 ~~~e~~~y~~~~~~~~~~~~~d~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~ 101 (462)
T 2ece_A 22 APPEDLAYVACLYTGTGINRADFIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVP 101 (462)
T ss_dssp SCCCSEEEEEEECTTTTCCCCCEEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEE
T ss_pred CCcceEEEEEeeccCCCCCCCCeEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEc
Confidence 46778888877553 22335688889987 78888765432 122344 234457 889888776
Q ss_pred --cCCeEEEEeCCCC-CCcee-eeee---------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCce
Q 013884 68 --ATNEIQFFDTTDF-PKGIL-YRLR---------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPL 134 (434)
Q Consensus 68 --~~~~i~v~~~~~~-~~~~~-~~~~---------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i 134 (434)
.++.|.|+|+... ..... ..+. ...-..+..+|++ -+|...-...++.++.|.+++..+ .+.+
T Consensus 102 ~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T---~~v~ 177 (462)
T 2ece_A 102 GLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYS---FEPL 177 (462)
T ss_dssp BTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTT---CCEE
T ss_pred cCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCC---CeEE
Confidence 4579999998532 22122 2221 0123446778885 333332222345678999999887 5666
Q ss_pred eeeeecccc---eeEEEECCCCCeEEEEEEeccc-----cc---Cc---eeecceeEEEEeeCCC-ceeeeecCCC-CCe
Q 013884 135 ARRSFFRCS---TVQLNWNRGSTGLLAVAQSDVD-----KT---NQ---SYYGESKLNYLTTDGT-HEGLVPLRKE-GPV 198 (434)
Q Consensus 135 ~~~~~~~~~---~~~~~ws~~G~~l~~~~~~~~d-----~~---~~---~~~g~~~l~~l~~~~~-~~~~v~l~~~-~~i 198 (434)
.+....... -+.+-|+|+++.+++. +.. .. .. ..+ ...|+.++.... ....+.+... ...
T Consensus 178 ~~~~~~~~~~~~~Yd~~~~p~~~~mvsS---~wg~p~~~~~g~~~~~~~~~~-~d~V~v~D~~~~k~~~tI~vg~~g~~P 253 (462)
T 2ece_A 178 GKWEIDRGDQYLAYDFWWNLPNEVLVSS---EWAVPNTIEDGLKLEHLKDRY-GNRIHFWDLRKRKRIHSLTLGEENRMA 253 (462)
T ss_dssp EECCSBCTTCCCCCCEEEETTTTEEEEC---BCCCHHHHTTCCCTTTHHHHS-CCEEEEEETTTTEEEEEEESCTTEEEE
T ss_pred EEEccCCCCccccceEEECCCCCEEEEc---cCcCccccccccchhhhhhcc-CCEEEEEECCCCcEeeEEecCCCCCcc
Confidence 655432111 3458899999964332 100 00 00 011 224666665543 2334444322 223
Q ss_pred EEEEE--CcCCCEEEEEEcc-----CCCeEEEEeccc-----eeEEEcC------------------CcCeeEEEECCCC
Q 013884 199 HDVQW--SYSGSEFAVVYGF-----MPASATIFNKKC-----RPILELG------------------SGPYNTVRWNPKG 248 (434)
Q Consensus 199 ~~~~w--spdg~~~av~~g~-----~~~~i~l~d~~~-----~~~~~~~------------------~~~~~~i~~sP~g 248 (434)
..+.| +|+|++..++ .. ..++|.+|..+. .++.++. ......|.+||||
T Consensus 254 ~~i~f~~~Pdg~~aYV~-~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DG 332 (462)
T 2ece_A 254 LELRPLHDPTKLMGFIN-MVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDD 332 (462)
T ss_dssp EEEEECSSTTCCEEEEE-EEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTS
T ss_pred ceeEeeECCCCCEEEEE-EeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCC
Confidence 45545 9999988774 43 556776654321 1111111 1335679999999
Q ss_pred CeEEEEecCCCCCeEEEEEcc---CCEEEEEeeCC----------------CceEEEECCCCCEEEEEE
Q 013884 249 KFLCLAGFGNLPGDMAFWDYV---DGKQLGTTRAE----------------CSVTSEWSPDGRYFMTAT 298 (434)
Q Consensus 249 ~~l~~~~~~~~~g~i~iwd~~---~~~~i~~~~~~----------------~~~~~~wspdg~~l~tas 298 (434)
++|.++..+. +.|.+||+. +.+.+..+... ....+++||||++|+++.
T Consensus 333 rfLYVSnrg~--d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 333 KFLYLSLWGI--GEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEEEEETTT--TEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CEEEEEeCCC--CEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 9999998765 799999986 34666655443 245699999999999988
No 200
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.25 E-value=2.9e-09 Score=97.16 Aligned_cols=232 Identities=9% Similarity=0.028 Sum_probs=137.5
Q ss_pred eeeecCCCcEEE-Ee-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC
Q 013884 54 SIRFSSDEAVAC-RM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS 131 (434)
Q Consensus 54 ~~~~S~d~~~la-~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~ 131 (434)
.+.+++||++++ .. .++.|.+|+................+..++++|++.-+++ .. .+.|.+|+... .
T Consensus 28 ~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~----~~---~~~i~~~d~~~---~ 97 (270)
T 1rwi_B 28 GVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVT----DF---NNRVVTLAAGS---N 97 (270)
T ss_dssp EEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEE----ET---TTEEEEECTTC---S
T ss_pred ceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEE----cC---CCEEEEEeCCC---c
Confidence 788999999776 53 4579999987553221111112245778889987432222 11 35778887654 2
Q ss_pred Cceeeeeec-ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEE
Q 013884 132 QPLARRSFF-RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEF 210 (434)
Q Consensus 132 ~~i~~~~~~-~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~ 210 (434)
. +...... ......+.++++|+ +++ +.. +...++.++................+..++++|+|+.+
T Consensus 98 ~-~~~~~~~~~~~p~~i~~~~~g~-l~v-~~~----------~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~ 164 (270)
T 1rwi_B 98 N-QTVLPFDGLNYPEGLAVDTQGA-VYV-ADR----------GNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVY 164 (270)
T ss_dssp C-CEECCCCSCSSEEEEEECTTCC-EEE-EEG----------GGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEE
T ss_pred e-EeeeecCCcCCCcceEECCCCC-EEE-EEC----------CCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEE
Confidence 2 2211111 13456788999987 333 211 11134555332221111111112356889999999844
Q ss_pred EEEEccCCCeEEEEeccceeEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee-C-CCceEE
Q 013884 211 AVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-A-ECSVTS 285 (434)
Q Consensus 211 av~~g~~~~~i~l~d~~~~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~-~-~~~~~~ 285 (434)
+ +....+.|.+||..+...... +......|+++|+|+++++.. + ++.|.+||........... + ..+..+
T Consensus 165 v--~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~-~--~~~v~~~~~~~~~~~~~~~~~~~~p~~i 239 (270)
T 1rwi_B 165 V--TDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH-N--TNQVVKLLAGSTTSTVLPFTGLNTPLAV 239 (270)
T ss_dssp E--EEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET-T--TSCEEEECTTCSCCEECCCCSCSCEEEE
T ss_pred E--EECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEEC-C--CCcEEEEcCCCCcceeeccCCCCCceeE
Confidence 4 344567999999876554433 225578899999996555443 2 3689999987654333222 2 246679
Q ss_pred EECCCCCEEEEEEcCCceeeCCcEEEEeecCcee
Q 013884 286 EWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF 319 (434)
Q Consensus 286 ~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~ 319 (434)
+++|||+.+++... ++.|++++......
T Consensus 240 ~~~~~g~l~v~~~~------~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 240 AVDSDRTVYVADRG------NDRVVKLTSLEHHH 267 (270)
T ss_dssp EECTTCCEEEEEGG------GTEEEEECCCGGGS
T ss_pred EECCCCCEEEEECC------CCEEEEEcCCCccc
Confidence 99999997777666 89999999876543
No 201
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.25 E-value=6.5e-08 Score=89.16 Aligned_cols=267 Identities=7% Similarity=-0.043 Sum_probs=156.8
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
+.+|+++|+|+.+++.. .++.|.+||.. ++. ..+.... .......+.++++|.+.+... ++.|..|+...
T Consensus 17 ~~~i~~d~~g~l~v~~~-----~~~~v~~~d~~-~~~-~~~~~~~-~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g- 87 (299)
T 2z2n_A 17 PYGITVSDKGKVWITQH-----KANMISCINLD-GKI-TEYPLPT-PDAKVMCLTISSDGEVWFTENAANKIGRITKKG- 87 (299)
T ss_dssp EEEEEECTTSCEEEEET-----TTTEEEEECTT-CCE-EEEECSS-TTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-
T ss_pred ccceEECCCCCEEEEec-----CCCcEEEEcCC-CCe-EEecCCc-ccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-
Confidence 57899999999887654 46789999987 654 3333221 113445789999999887765 57899998752
Q ss_pred CCceeeee--ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee-eeecccceeEEEECCCCCeEE
Q 013884 81 PKGILYRL--RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR-RSFFRCSTVQLNWNRGSTGLL 157 (434)
Q Consensus 81 ~~~~~~~~--~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~-~~~~~~~~~~~~ws~~G~~l~ 157 (434)
. .....+ ....+..+.++|++. . |+... ..+.|..|+. . +..... ..........+.+.++|.. .
T Consensus 88 ~-~~~~~~~~~~~~~~~i~~~~~g~-l---~v~~~--~~~~i~~~d~-~---g~~~~~~~~~~~~~~~~i~~~~~g~l-~ 155 (299)
T 2z2n_A 88 I-IKEYTLPNPDSAPYGITEGPNGD-I---WFTEM--NGNRIGRITD-D---GKIREYELPNKGSYPSFITLGSDNAL-W 155 (299)
T ss_dssp C-EEEEECSSTTCCEEEEEECTTSC-E---EEEET--TTTEEEEECT-T---CCEEEEECSSTTCCEEEEEECTTSCE-E
T ss_pred c-EEEEeCCCcCCCceeeEECCCCC-E---EEEec--CCceEEEECC-C---CCEEEecCCCCCCCCceEEEcCCCCE-E
Confidence 1 111221 123577888888742 2 22111 1346666765 3 221111 1111234567888888863 3
Q ss_pred EEEEecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc--
Q 013884 158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-- 234 (434)
Q Consensus 158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~-- 234 (434)
+.. . +...++.++..+. ...+.+. ....+..++++++|+.++ +....+.+.+||..+. +..+
T Consensus 156 v~~-~----------~~~~i~~~~~~g~-~~~~~~~~~~~~~~~i~~~~~g~l~v--~~~~~~~i~~~~~~g~-~~~~~~ 220 (299)
T 2z2n_A 156 FTE-N----------QNNAIGRITESGD-ITEFKIPTPASGPVGITKGNDDALWF--VEIIGNKIGRITTSGE-ITEFKI 220 (299)
T ss_dssp EEE-T----------TTTEEEEECTTCC-EEEEECSSTTCCEEEEEECTTSSEEE--EETTTTEEEEECTTCC-EEEEEC
T ss_pred EEe-C----------CCCEEEEEcCCCc-EEEeeCCCCCCcceeEEECCCCCEEE--EccCCceEEEECCCCc-EEEEEC
Confidence 321 1 1123566655332 2222222 234678999999988544 3445678999998433 3322
Q ss_pred --CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE-eeC--CCceEEEECCCCCEEEEEEcCCceeeCCcE
Q 013884 235 --GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT-TRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGI 309 (434)
Q Consensus 235 --~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~-~~~--~~~~~~~wspdg~~l~tas~~~rl~~D~~i 309 (434)
+......++++|+|++++... + ++.|..||. +++.... ... ..+..+.+ ++|+.+++. . .+++
T Consensus 221 ~~~~~~~~~i~~~~~g~l~v~~~-~--~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~-~------~~~l 288 (299)
T 2z2n_A 221 PTPNARPHAITAGAGIDLWFTEW-G--ANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAM-E------CDKI 288 (299)
T ss_dssp SSTTCCEEEEEECSTTCEEEEET-T--TTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEE-T------TTEE
T ss_pred CCCCCCceeEEECCCCCEEEecc-C--CceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEe-c------CCcE
Confidence 235678899999999555432 2 368999998 4543322 222 25566888 888866654 3 5666
Q ss_pred EEEeecC
Q 013884 310 KIFHHNG 316 (434)
Q Consensus 310 ~iw~~~g 316 (434)
..++...
T Consensus 289 ~~~~~~~ 295 (299)
T 2z2n_A 289 GKLTLIK 295 (299)
T ss_dssp EEEEEC-
T ss_pred EEEEcCc
Confidence 6666543
No 202
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.25 E-value=2.9e-09 Score=103.82 Aligned_cols=261 Identities=10% Similarity=0.052 Sum_probs=149.4
Q ss_pred eEEecCCCcEEEEEecC-----CCCCCCcEEEEEcCCCcEEEEEeec-CcC---CCCCCeeeecCCCcEEEEec---CCe
Q 013884 4 LLTCLRVGLIIQTFQKS-----STPQEKNVILWKTETGEAVYQLFQK-NMT---KTTWPSIRFSSDEAVACRMA---TNE 71 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~-----~~~~d~~v~iWd~~~g~~~~~~~~~-~~~---~~~~~~~~~S~d~~~la~~~---~~~ 71 (434)
.|.|||||++|...... .+..++.|.++|..+++.+.++... ... ...-..+.|||||++++.+. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 58899999999876521 0113568999999999998887642 000 01122689999999888763 479
Q ss_pred EEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-eecccc----eeE
Q 013884 72 IQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-SFFRCS----TVQ 146 (434)
Q Consensus 72 i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-~~~~~~----~~~ 146 (434)
|.++|+.... ....+...+. ....|++...+..+.+ ++.+.+.++.. ++..... ..+... ...
T Consensus 202 VsVID~~t~k--vv~~I~v~g~--~~~~p~g~~~~v~~~~-----dG~~~~V~~~~---~~v~~~~~~~~~v~~~p~~~~ 269 (426)
T 3c75_H 202 VGVVDLEGKT--FDRMLDVPDC--YHIFPASPTVFYMNCR-----DGSLARVDFAD---GETKVTNTEVFHTEDELLINH 269 (426)
T ss_dssp EEEEETTTTE--EEEEEECCSE--EEEEEEETTEEEEEET-----TSSEEEEECCT---TCCEEEECCCCSCTTSCBCSC
T ss_pred EEEEECCCCe--EEEEEEcCCc--eeeccCCCcEEEEEcC-----CCCEEEEECCC---CcEEEEeeeeeccCCCceeeE
Confidence 9999998854 3344555443 2223332222222222 12333333322 2221110 001000 123
Q ss_pred EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceee---eecC---------CCCCeEEEEECcCCCEEEEEE
Q 013884 147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL---VPLR---------KEGPVHDVQWSYSGSEFAVVY 214 (434)
Q Consensus 147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~---v~l~---------~~~~i~~~~wspdg~~~av~~ 214 (434)
+.+.++|..+++... .+ .++.++..+..... +.+. .......++++||++++.+..
T Consensus 270 ~~~~~dg~~~~~~s~-----~g-------~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~ 337 (426)
T 3c75_H 270 PAFSLRSGRLVWPTY-----TG-------KIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLV 337 (426)
T ss_dssp CEECTTTCEEEEEBT-----TS-------EEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEE
T ss_pred eeecCCCCEEEEEeC-----CC-------cEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEe
Confidence 456888888766421 11 35555554332111 1110 012233479999999888753
Q ss_pred ccC--------CCeEEEEeccce-eEEEcC-CcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCEEEEEe-eCCCc
Q 013884 215 GFM--------PASATIFNKKCR-PILELG-SGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQLGTT-RAECS 282 (434)
Q Consensus 215 g~~--------~~~i~l~d~~~~-~~~~~~-~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~~~~i~~~-~~~~~ 282 (434)
... .+.|.++|.... .+..+. ...-..|.|+|||+ +++++..+ ++.|.++|+.+++.+.++ .-...
T Consensus 338 ~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~--s~~VsVID~~t~kvv~tI~~vG~~ 415 (426)
T 3c75_H 338 DQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAG--TQTLHIYDAATGEELRSVDQLGRG 415 (426)
T ss_dssp EECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETT--TTEEEEEETTTCCEEEEECCCSSS
T ss_pred cccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCC--CCeEEEEECCCCCEEEEecCCCCC
Confidence 321 247999999644 444553 22367899999999 88877643 379999999999999886 32222
Q ss_pred eEEEECCC
Q 013884 283 VTSEWSPD 290 (434)
Q Consensus 283 ~~~~wspd 290 (434)
..+..+||
T Consensus 416 P~~i~~~~ 423 (426)
T 3c75_H 416 PQIITTHD 423 (426)
T ss_dssp CCEEECCC
T ss_pred CcEEEcCC
Confidence 23555555
No 203
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.24 E-value=2.3e-09 Score=101.51 Aligned_cols=232 Identities=11% Similarity=0.043 Sum_probs=140.7
Q ss_pred CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecC-------CeeE
Q 013884 24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVP-------GVAA 95 (434)
Q Consensus 24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~-------~v~~ 95 (434)
.++.|.+||..+++.+.++... .....+.+++|+++.++. .++.|.+||..+... ...+... ....
T Consensus 62 ~~~~v~viD~~t~~~~~~i~~~----~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~--~~~i~~g~~~~~~~~p~~ 135 (328)
T 3dsm_A 62 NSHVIFAIDINTFKEVGRITGF----TSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEI--TGYIECPDMDMESGSTEQ 135 (328)
T ss_dssp GGTEEEEEETTTCCEEEEEECC----SSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEE--EEEEECTTCCTTTCBCCC
T ss_pred CCCEEEEEECcccEEEEEcCCC----CCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeE--EEEEEcCCccccCCCcce
Confidence 3678999999999998888532 233378999999766665 578999999877542 2223221 3445
Q ss_pred EEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeec-c
Q 013884 96 FEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYG-E 174 (434)
Q Consensus 96 ~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g-~ 174 (434)
+++ .+ +. + |+.. .+..+.|.++++.+ .+.+...... .....+.++++|+ +++.+..+.+. ..|.+ .
T Consensus 136 i~~-~~-~~-l--yv~~-~~~~~~v~viD~~t---~~~~~~i~~g-~~p~~i~~~~dG~-l~v~~~~~~~~--~~~~~~~ 202 (328)
T 3dsm_A 136 MVQ-YG-KY-V--YVNC-WSYQNRILKIDTET---DKVVDELTIG-IQPTSLVMDKYNK-MWTITDGGYEG--SPYGYEA 202 (328)
T ss_dssp EEE-ET-TE-E--EEEE-CTTCCEEEEEETTT---TEEEEEEECS-SCBCCCEECTTSE-EEEEBCCBCTT--CSSCBCC
T ss_pred EEE-EC-CE-E--EEEc-CCCCCEEEEEECCC---CeEEEEEEcC-CCccceEEcCCCC-EEEEECCCccC--CccccCC
Confidence 555 22 22 2 1111 12356899999877 5555544432 2345778899997 33332221110 00100 1
Q ss_pred eeEEEEeeCCCc-eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEE--c-C--CcCeeEEEECCCC
Q 013884 175 SKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE--L-G--SGPYNTVRWNPKG 248 (434)
Q Consensus 175 ~~l~~l~~~~~~-~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~--~-~--~~~~~~i~~sP~g 248 (434)
..|+.++..... ...+.+......+.++|+||++.+.++ .. .+.+||.....+.. + . ......++++|++
T Consensus 203 ~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~-~~---~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~ 278 (328)
T 3dsm_A 203 PSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWI-NN---DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNN 278 (328)
T ss_dssp CEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEE-SS---SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTT
T ss_pred ceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEE-cc---EEEEEECCCCceeeeeeecCCCCceEEEEEcCCC
Confidence 357777765432 223444323467899999999988864 22 88999986544321 1 2 2456789999966
Q ss_pred CeEEEEecC--CCCCeEEEEEccCCEEEEEeeC
Q 013884 249 KFLCLAGFG--NLPGDMAFWDYVDGKQLGTTRA 279 (434)
Q Consensus 249 ~~l~~~~~~--~~~g~i~iwd~~~~~~i~~~~~ 279 (434)
..|.++... ..++.|.+||.+ ++.+..+..
T Consensus 279 g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~ 310 (328)
T 3dsm_A 279 GEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV 310 (328)
T ss_dssp CCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred CeEEEEcccccccCCEEEEECCC-CCEEEEEEe
Confidence 656555511 024799999998 877776643
No 204
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.17 E-value=6.2e-08 Score=90.14 Aligned_cols=225 Identities=12% Similarity=0.085 Sum_probs=136.2
Q ss_pred eeeecCCCcEEEEe--cCCeEEEEeCCCCCCceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013884 54 SIRFSSDEAVACRM--ATNEIQFFDTTDFPKGILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130 (434)
Q Consensus 54 ~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~ 130 (434)
.+.|++++..|... .++.|+.|+...... .... ...+..+.++|++. +++. . ...|.+|+..+
T Consensus 17 gp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~---~~~~~~~~~~~i~~~~dG~-l~v~-~------~~~l~~~d~~~--- 82 (297)
T 3g4e_A 17 SPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV---QRVTMDAPVSSVALRQSGG-YVAT-I------GTKFCALNWKE--- 82 (297)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTCCE---EEEECSSCEEEEEEBTTSS-EEEE-E------TTEEEEEETTT---
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCcE---EEEeCCCceEEEEECCCCC-EEEE-E------CCeEEEEECCC---
Confidence 68899976555444 457999999876432 2222 34688899999854 3322 1 23677787654
Q ss_pred CCc--eeeeee--cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcC
Q 013884 131 SQP--LARRSF--FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS 206 (434)
Q Consensus 131 ~~~--i~~~~~--~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspd 206 (434)
++. +..... .......+.+.++|+. .+..................||.++..+.... + .......+.++|+||
T Consensus 83 g~~~~~~~~~~~~~~~~~~di~~d~dG~l-~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~-~~~~~~pngi~~spd 159 (297)
T 3g4e_A 83 QSAVVLATVDNDKKNNRFNDGKVDPAGRY-FAGTMAEETAPAVLERHQGALYSLFPDHHVKK-Y-FDQVDISNGLDWSLD 159 (297)
T ss_dssp TEEEEEEECCTTCSSEEEEEEEECTTSCE-EEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-E-EEEESBEEEEEECTT
T ss_pred CcEEEEEecCCCCCCCCCCCEEECCCCCE-EEecCCcccccccccCCCcEEEEEECCCCEEE-E-eeccccccceEEcCC
Confidence 221 111110 0123457889999984 33222111000000012235777765543221 1 111234578999999
Q ss_pred CCEEEEEEccCCCeEEEEecc--ce------eEEEcC--CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE
Q 013884 207 GSEFAVVYGFMPASATIFNKK--CR------PILELG--SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT 276 (434)
Q Consensus 207 g~~~av~~g~~~~~i~l~d~~--~~------~~~~~~--~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~ 276 (434)
++.+.++ ....+.|.+||.. .. .+..+. .+....+++.++|++.+... + .+.|..||.++++.+..
T Consensus 160 g~~lyv~-~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~-~--~~~v~~~d~~tG~~~~~ 235 (297)
T 3g4e_A 160 HKIFYYI-DSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACY-N--GGRVIRLDPVTGKRLQT 235 (297)
T ss_dssp SCEEEEE-EGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEE-T--TTEEEEECTTTCCEEEE
T ss_pred CCEEEEe-cCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEc-C--CCEEEEEcCCCceEEEE
Confidence 9988764 5556799999863 21 122332 24557899999998665544 2 25899999998988877
Q ss_pred eeCC--CceEEEEC-CCCCEEEEEEc
Q 013884 277 TRAE--CSVTSEWS-PDGRYFMTATT 299 (434)
Q Consensus 277 ~~~~--~~~~~~ws-pdg~~l~tas~ 299 (434)
+..+ .++.++|+ ||++.|..++.
T Consensus 236 i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 236 VKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EECCCCCceEEEEeCCCCCEEEEEcC
Confidence 7655 67779998 99998888776
No 205
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.14 E-value=3.9e-08 Score=91.62 Aligned_cols=244 Identities=9% Similarity=0.027 Sum_probs=138.4
Q ss_pred cceEEecCCCcEEEE-------EecCCCCCCCcEEEEEcCCCcEEEEEeec--CcCCCCCCeeeecCC-CcEEEEecCCe
Q 013884 2 LLLLTCLRVGLIIQT-------FQKSSTPQEKNVILWKTETGEAVYQLFQK--NMTKTTWPSIRFSSD-EAVACRMATNE 71 (434)
Q Consensus 2 V~~l~fSP~g~~L~t-------~~~~~~~~d~~v~iWd~~~g~~~~~~~~~--~~~~~~~~~~~~S~d-~~~la~~~~~~ 71 (434)
..+++|+|+|+.+++ .. .++.|.+||..+++.. .+... ..+......+.+++| +++++....+.
T Consensus 20 ~~~~~~~~~g~l~~~~~~~~~~~~-----~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~ 93 (314)
T 1pjx_A 20 AEGPVFDKNGDFYIVAPEVEVNGK-----PAGEILRIDLKTGKKT-VICKPEVNGYGGIPAGCQCDRDANQLFVADMRLG 93 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTE-----ECCEEEEECTTTCCEE-EEECCEETTEECCEEEEEECSSSSEEEEEETTTE
T ss_pred ccCceECCCCCEEEEEeccccCCC-----CCCEEEEEeCCCCcEE-EEEecccCCCCCCCceEEEecCCCcEEEEECCCC
Confidence 357899999998877 23 4678999998888753 33220 001123447899999 88777666668
Q ss_pred EEEEeCCCCCCcee-ee----eecCCeeEEEEeCCCCCeEEEEecCC-------CCCCceEEEEEcCCCCCCCceeeeee
Q 013884 72 IQFFDTTDFPKGIL-YR----LRVPGVAAFEVSKAPGSHVAVFVPES-------KGSPASVQIYACGKDLQSQPLARRSF 139 (434)
Q Consensus 72 i~v~~~~~~~~~~~-~~----~~~~~v~~~~~sp~~~~~ia~~~~~~-------~~~~~~v~i~~~~~~~~~~~i~~~~~ 139 (434)
|.+|+.. ...... .. .....+..+.++|++...++...... ........||.+... ++ +.....
T Consensus 94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~-~~~~~~ 169 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQ-MIQVDT 169 (314)
T ss_dssp EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SC-EEEEEE
T ss_pred EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC--CC-EEEecc
Confidence 9999986 332111 11 11124778899988532222111000 000112344444321 12 211111
Q ss_pred cccceeEEEEC----CCCCeEEEEEEecccccCceeecceeEEEEeeC--CCc---eeeeecCCC--CCeEEEEECcCCC
Q 013884 140 FRCSTVQLNWN----RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD--GTH---EGLVPLRKE--GPVHDVQWSYSGS 208 (434)
Q Consensus 140 ~~~~~~~~~ws----~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~--~~~---~~~v~l~~~--~~i~~~~wspdg~ 208 (434)
.......+.|+ ++|+.|++.... +. .|+.++.. +.. .....+... +.+..++++++|+
T Consensus 170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~--~~---------~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~ 238 (314)
T 1pjx_A 170 AFQFPNGIAVRHMNDGRPYQLIVAETP--TK---------KLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN 238 (314)
T ss_dssp EESSEEEEEEEECTTSCEEEEEEEETT--TT---------EEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred CCCCcceEEEecccCCCCCEEEEEECC--CC---------eEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC
Confidence 12234578899 998876553211 11 23333322 110 011122211 4578899999997
Q ss_pred EEEEEEccCCCeEEEEecc-ceeEEE--cCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013884 209 EFAVVYGFMPASATIFNKK-CRPILE--LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD 270 (434)
Q Consensus 209 ~~av~~g~~~~~i~l~d~~-~~~~~~--~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~ 270 (434)
.++ +...++.|.+||.+ +..+.. .+...+.+++|+|+|+.|.+++.+ ++.|..|++..
T Consensus 239 l~v--~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~--~~~l~~~~~~~ 299 (314)
T 1pjx_A 239 LLV--ANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE--NNAVWKFEWQR 299 (314)
T ss_dssp EEE--EEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT--TTEEEEEECSS
T ss_pred EEE--EEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCC--CCeEEEEeCCC
Confidence 666 34446799999987 544333 345678899999999977776643 36899999764
No 206
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.14 E-value=4.6e-08 Score=90.04 Aligned_cols=219 Identities=11% Similarity=0.104 Sum_probs=135.2
Q ss_pred cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee------cccceeEEEE-CCCCCeEEEEEEe
Q 013884 90 VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF------FRCSTVQLNW-NRGSTGLLAVAQS 162 (434)
Q Consensus 90 ~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~------~~~~~~~~~w-s~~G~~l~~~~~~ 162 (434)
......++++|++. ++. .+ ...+.|.+|+... ..+..... +......+.+ .++|. |++.. .
T Consensus 29 ~~~p~~v~~~~~g~-l~v---~~--~~~~~i~~~d~~g----~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~-l~v~~-~ 96 (286)
T 1q7f_A 29 FTEPSGVAVNAQND-IIV---AD--TNNHRIQIFDKEG----RFKFQFGECGKRDSQLLYPNRVAVVRNSGD-IIVTE-R 96 (286)
T ss_dssp BSCEEEEEECTTCC-EEE---EE--GGGTEEEEECTTS----CEEEEECCBSSSTTCBSSEEEEEEETTTTE-EEEEE-C
T ss_pred cCCCceEEECCCCC-EEE---EE--CCCCEEEEECCCC----cEEEEecccCCCcccccCceEEEEEcCCCe-EEEEc-C
Confidence 44577888888743 222 11 1235678887542 22222211 1124567778 45554 43321 1
Q ss_pred cccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEcC----CcC
Q 013884 163 DVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG----SGP 238 (434)
Q Consensus 163 ~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~~----~~~ 238 (434)
. +...++.++..+.....+.......+++++++|+|+.++ +...++.|.+||..+..+..+. ...
T Consensus 97 ~---------~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v--~~~~~~~i~~~~~~g~~~~~~~~~~~~~~ 165 (286)
T 1q7f_A 97 S---------PTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIV--VECKVMRVIIFDQNGNVLHKFGCSKHLEF 165 (286)
T ss_dssp G---------GGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEE--EETTTTEEEEECTTSCEEEEEECTTTCSS
T ss_pred C---------CCCEEEEECCCCcEEEEecCccCCCceEEEEeCCCCEEE--EECCCCEEEEEcCCCCEEEEeCCCCccCC
Confidence 0 112355555444332223223345689999999997544 4555679999998877666552 245
Q ss_pred eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC----CceEEEECCCCCEEEEEEcCCceeeCC-cEEEEe
Q 013884 239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDN-GIKIFH 313 (434)
Q Consensus 239 ~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~----~~~~~~wspdg~~l~tas~~~rl~~D~-~i~iw~ 313 (434)
.+.|+++|+|+++++.. .++.|.+||.. ++.+..+... .+..++++|+|+.+++... ++ .|++|+
T Consensus 166 p~~i~~~~~g~l~v~~~---~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~------~~~~i~~~~ 235 (286)
T 1q7f_A 166 PNGVVVNDKQEIFISDN---RAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNH------NNFNLTIFT 235 (286)
T ss_dssp EEEEEECSSSEEEEEEG---GGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECS------SSCEEEEEC
T ss_pred cEEEEECCCCCEEEEEC---CCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCC------CCEEEEEEC
Confidence 78999999999666554 23689999974 4555555432 4566999999988877766 66 999999
Q ss_pred ecCceeeeeecc----cceeeEEEcCCCCCCC
Q 013884 314 HNGSLFFKKMFD----KLFQAEWKPVSPDKFG 341 (434)
Q Consensus 314 ~~g~~~~~~~~~----~~~~~~w~p~~~~~~~ 341 (434)
.+|+.+...... ....+.+.|++..++.
T Consensus 236 ~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs 267 (286)
T 1q7f_A 236 QDGQLISALESKVKHAQCFDVALMDDGSVVLA 267 (286)
T ss_dssp TTSCEEEEEEESSCCSCEEEEEEETTTEEEEE
T ss_pred CCCCEEEEEcccCCCCcceeEEECCCCcEEEE
Confidence 999876654322 3568899998753333
No 207
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.13 E-value=8.7e-08 Score=93.53 Aligned_cols=228 Identities=10% Similarity=0.078 Sum_probs=130.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-C--eEEEEeCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-N--EIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~--~i~v~~~~ 78 (434)
...|+|+|+|+.+++-. .++.|++||..++.... +.... ... +++|++++++|+.+.. + .|.+|+..
T Consensus 133 P~~la~d~~g~lyv~d~-----~~~~I~~id~~~g~~~~-~~~~~---~~~-~ia~~~~g~~l~~~d~~~~~~I~~~d~~ 202 (409)
T 3hrp_A 133 MWGIAAVGNNTVLAYQR-----DDPRVRLISVDDNKVTT-VHPGF---KGG-KPAVTKDKQRVYSIGWEGTHTVYVYMKA 202 (409)
T ss_dssp EEEEEECSTTEEEEEET-----TTTEEEEEETTTTEEEE-EEETC---CBC-BCEECTTSSEEEEEBSSTTCEEEEEEGG
T ss_pred ceEEEEeCCCCEEEEec-----CCCcEEEEECCCCEEEE-eeccC---CCC-ceeEecCCCcEEEEecCCCceEEEEEcC
Confidence 35799999999666544 56889999998876543 33321 222 4899999998777643 2 78888865
Q ss_pred CCCCceeeee------ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC
Q 013884 79 DFPKGILYRL------RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG 152 (434)
Q Consensus 79 ~~~~~~~~~~------~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~ 152 (434)
..... ..+ .......+++ +|+
T Consensus 203 ~~~~~--~~~g~~~~~~~~~p~~iav---------------------------------------------------~p~ 229 (409)
T 3hrp_A 203 SGWAP--TRIGQLGSTFSGKIGAVAL---------------------------------------------------DET 229 (409)
T ss_dssp GTTCE--EEEEECCTTSCSCCCBCEE---------------------------------------------------CTT
T ss_pred CCcee--EEeeeccchhcCCcEEEEE---------------------------------------------------eCC
Confidence 42211 111 1112233333 332
Q ss_pred CCeEEEEEEecccccCceeecceeEEEEeeCCCceeee----ecCCCC--CeEEEEECcCCCEEEEEEccCCCeEEEEec
Q 013884 153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV----PLRKEG--PVHDVQWSYSGSEFAVVYGFMPASATIFNK 226 (434)
Q Consensus 153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v----~l~~~~--~i~~~~wspdg~~~av~~g~~~~~i~l~d~ 226 (434)
+..|++ + +. .+ .++.++..+.....+ .....+ |.+.++|+|++..+.+ +....+.|..||.
T Consensus 230 ~g~lyv-~--d~--~~-------~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv-~d~~~~~I~~~~~ 296 (409)
T 3hrp_A 230 EEWLYF-V--DS--NK-------NFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM-SDQNLSSVYKITP 296 (409)
T ss_dssp SSEEEE-E--CT--TC-------EEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEE-EETTTTEEEEECT
T ss_pred CCeEEE-E--EC--CC-------cEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEE-EeCCCCEEEEEec
Confidence 222222 1 00 00 122222222111111 001111 2239999997666665 4556779999998
Q ss_pred cceeEEEcCC----------------cCeeEEEECCCCCeEEEEec-CCCCCeEEEEEccCCEEEEEeeC----------
Q 013884 227 KCRPILELGS----------------GPYNTVRWNPKGKFLCLAGF-GNLPGDMAFWDYVDGKQLGTTRA---------- 279 (434)
Q Consensus 227 ~~~~~~~~~~----------------~~~~~i~~sP~g~~l~~~~~-~~~~g~i~iwd~~~~~~i~~~~~---------- 279 (434)
.+......+. ..-+.++++|+|+ |.++.. ++ +.|+.||..+++.......
T Consensus 297 ~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~--~~I~~~~~~~G~v~~~~g~~~~~g~~~g~ 373 (409)
T 3hrp_A 297 DGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKG--YCLRKLDILDGYVSTVAGQVDVASQIDGT 373 (409)
T ss_dssp TCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTT--CEEEEEETTTTEEEEEEECTTCBSCCCBS
T ss_pred CCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCC--CEEEEEECCCCEEEEEeCCCCCCCcCCCC
Confidence 7653322211 2356899999999 445554 44 6999999888865443322
Q ss_pred ------CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884 280 ------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 280 ------~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~ 314 (434)
..+..++++|+|..+++-.. ++.|+.+++
T Consensus 374 ~~~~~~~~P~giavd~~g~lyVad~~------n~~Ir~i~~ 408 (409)
T 3hrp_A 374 PLEATFNYPYDICYDGEGGYWIAEAW------GKAIRKYAV 408 (409)
T ss_dssp TTTCCBSSEEEEEECSSSEEEEEEST------TCEEEEEEE
T ss_pred hhceEeCCceEEEEcCCCCEEEEECC------CCeEEEEEe
Confidence 13556999999876666555 677776654
No 208
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.10 E-value=9e-07 Score=81.40 Aligned_cols=254 Identities=8% Similarity=0.016 Sum_probs=148.5
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
+.+|.++++|+.+++.. .++.|.+||.. ++... +.... .......+.+.++|.+.+... ++.|.+|+.. .
T Consensus 22 p~~i~~d~~g~l~v~~~-----~~~~v~~~~~~-~~~~~-~~~~~-~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 22 PYGITSSEDGKVWFTQH-----KANKISSLDQS-GRIKE-FEVPT-PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp EEEEEECTTSCEEEEET-----TTTEEEEECTT-SCEEE-EECSS-TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cceeeECCCCCEEEEcC-----CCCeEEEECCC-CceEE-EECCC-CCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence 46789999999887654 46889999987 65433 33221 113344788999998777664 5789999976 2
Q ss_pred CCceeeeee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee--cccceeEEEECCCCCeE
Q 013884 81 PKGILYRLR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF--FRCSTVQLNWNRGSTGL 156 (434)
Q Consensus 81 ~~~~~~~~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~--~~~~~~~~~ws~~G~~l 156 (434)
.. ....+. ...+..+++.+++...++ .. ..+.|..++... . +..... .......+.+.++|+ |
T Consensus 93 ~~-~~~~~~~~~~~~~~i~~~~~g~l~v~----~~--~~~~i~~~~~~g----~-~~~~~~~~~~~~~~~i~~d~~g~-l 159 (300)
T 2qc5_A 93 GF-TEYPLPQPDSGPYGITEGLNGDIWFT----QL--NGDRIGKLTADG----T-IYEYDLPNKGSYPAFITLGSDNA-L 159 (300)
T ss_dssp CE-EEEECSSTTCCEEEEEECSTTCEEEE----ET--TTTEEEEECTTS----C-EEEEECSSTTCCEEEEEECTTSS-E
T ss_pred Ce-EEecCCCCCCCCccceECCCCCEEEE----cc--CCCeEEEECCCC----C-EEEccCCCCCCCceeEEECCCCC-E
Confidence 21 212221 245778888887432222 11 123555555431 1 111111 123456788888888 3
Q ss_pred EEEEEecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEE-c
Q 013884 157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE-L 234 (434)
Q Consensus 157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~-~ 234 (434)
.+.. . +...|+.++..+.. ..+.+. ....+..++++++|+.++ +....+.+.+||..+..... +
T Consensus 160 ~v~~-~----------~~~~i~~~~~~g~~-~~~~~~~~~~~~~~i~~d~~g~l~v--~~~~~~~i~~~~~~g~~~~~~~ 225 (300)
T 2qc5_A 160 WFTE-N----------QNNSIGRITNTGKL-EEYPLPTNAAAPVGITSGNDGALWF--VEIMGNKIGRITTTGEISEYDI 225 (300)
T ss_dssp EEEE-T----------TTTEEEEECTTCCE-EEEECSSTTCCEEEEEECTTSSEEE--EETTTTEEEEECTTCCEEEEEC
T ss_pred EEEe-c----------CCCeEEEECCCCcE-EEeeCCCCCCCcceEEECCCCCEEE--EccCCCEEEEEcCCCcEEEEEC
Confidence 3321 1 11135555553332 223332 234678999999987554 34445689999985443322 2
Q ss_pred --CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEE-Eee--CCCceEEEECCCCCEEE
Q 013884 235 --GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG-TTR--AECSVTSEWSPDGRYFM 295 (434)
Q Consensus 235 --~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~-~~~--~~~~~~~~wspdg~~l~ 295 (434)
+......++++|+|++.++. .+ .+.|..||.. ++... ... ...+..+..+++|+.++
T Consensus 226 ~~~~~~~~~i~~d~~g~l~v~~-~~--~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v 287 (300)
T 2qc5_A 226 PTPNARPHAITAGKNSEIWFTE-WG--ANQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSVWF 287 (300)
T ss_dssp SSTTCCEEEEEECSTTCEEEEE-TT--TTEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEE
T ss_pred CCCCCCceEEEECCCCCEEEec-cC--CCeEEEECCC-CcEEEEECCccCCccceeEeCCCCCEEE
Confidence 23456789999999855544 32 3689999984 43322 122 12455689999998544
No 209
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.07 E-value=1.1e-08 Score=97.99 Aligned_cols=255 Identities=9% Similarity=-0.034 Sum_probs=144.8
Q ss_pred cEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----------CCeEEEEeCCCCCCceeeeeec-----
Q 013884 27 NVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----------TNEIQFFDTTDFPKGILYRLRV----- 90 (434)
Q Consensus 27 ~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----------~~~i~v~~~~~~~~~~~~~~~~----- 90 (434)
+|.|.|..+++.+.++.... . +.+.+|||++++..+. ++.|.+||...... ..++..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~---~--P~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v--v~~I~v~~~~~ 119 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAF---L--SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP--IADIELPDAPR 119 (368)
T ss_dssp EEEEEETTTTEEEEEEEECT---T--CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE--EEEEEETTSCS
T ss_pred eEEEEECCCCeEEEEEeCCC---C--CceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE--EEEEECCCccc
Confidence 88899999999999987653 2 3799999999888774 47999999988664 333333
Q ss_pred ----CCeeEEEEeCCCCCeEEEEecCCCCCCceEEE--EEcCCCCCCCceeeeeec-------ccceeEEEECCCCCeEE
Q 013884 91 ----PGVAAFEVSKAPGSHVAVFVPESKGSPASVQI--YACGKDLQSQPLARRSFF-------RCSTVQLNWNRGSTGLL 157 (434)
Q Consensus 91 ----~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i--~~~~~~~~~~~i~~~~~~-------~~~~~~~~ws~~G~~l~ 157 (434)
.....+.+||++...+ +.... ....+.+ +|+.+ +...... .....-+..+++|+.+.
T Consensus 120 ~~~g~~P~~ia~SpDGk~ly-Van~~---~~~~v~V~~iD~~t------v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~ 189 (368)
T 1mda_H 120 FSVGPRVHIIGNCASSACLL-FFLFG---SSAAAGLSVPGASD------DQLTKSASCFHIHPGAAATHYLGSCPASLAA 189 (368)
T ss_dssp CCBSCCTTSEEECTTSSCEE-EEECS---SSCEEEEEETTTEE------EEEEECSSCCCCEEEETTEEECCCCTTSCEE
T ss_pred cccCCCcceEEEcCCCCEEE-EEccC---CCCeEEEEEEchhh------ceEEECCCceEEccCCCeEEEEEcCCCCEEE
Confidence 2356789999954433 22211 1234555 55532 1111110 01111123334444322
Q ss_pred EEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee---EEEc
Q 013884 158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP---ILEL 234 (434)
Q Consensus 158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~---~~~~ 234 (434)
+- .+.... +.+ . .+.... ..+.+. ..|. + ++++..+++++ . +.+.+.|..... +..+
T Consensus 190 vd----~~~~~~-~~~--~--v~~~~t---~~i~vg-~~P~---~-~~~~~~~~~vs--~-~~V~viD~~~~~~~v~~~~ 249 (368)
T 1mda_H 190 SD----LAAAPA-AAG--I--VGAQCT---GAQNCS-SQAA---Q-ANYPGMLVWAV--A-SSILQGDIPAAGATMKAAI 249 (368)
T ss_dssp EE----CCSSCC-CCE--E--CCCCSC---TTSCBC-SCCE---E-ETTTTEEEECB--S-SCCEEEECCSSCCEEECCC
T ss_pred EE----Cccccc-cCC--e--EEEEee---eeeeCC-CCcc---c-cccCCEEEEEc--C-CEEEEEECCCCcceEEEEE
Confidence 21 000000 000 0 000000 112222 3454 3 67777777543 3 789999985422 1111
Q ss_pred --C----------CcCeeEEEECCCCCeEEEEec---CC---CCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEE
Q 013884 235 --G----------SGPYNTVRWNPKGKFLCLAGF---GN---LPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFM 295 (434)
Q Consensus 235 --~----------~~~~~~i~~sP~g~~l~~~~~---~~---~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~ 295 (434)
. ......+.++|||+.+.++.. +. ..+.+.++|+.+++.+..+... ....++|+|||++++
T Consensus 250 ~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~ 329 (368)
T 1mda_H 250 DGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDN 329 (368)
T ss_dssp CSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEE
T ss_pred EeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEE
Confidence 1 011223789999998887643 20 0125669999999988877654 566799999998655
Q ss_pred EEEc-CCceeeCCcEEEEee-cCceeeeee
Q 013884 296 TATT-APRLQIDNGIKIFHH-NGSLFFKKM 323 (434)
Q Consensus 296 tas~-~~rl~~D~~i~iw~~-~g~~~~~~~ 323 (434)
++.. . ++.|.|+|. +++.+....
T Consensus 330 va~~~~-----~~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 330 YANSAG-----TEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp EEEETT-----TTEEEEEESSSCEEEEECC
T ss_pred EEccCC-----CCeEEEEECCCCcEEEEEE
Confidence 5543 3 899999999 455554443
No 210
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.07 E-value=1.7e-07 Score=87.28 Aligned_cols=241 Identities=10% Similarity=0.021 Sum_probs=140.5
Q ss_pred CeeeecCCCcEEEE--------ecCCeEEEEeCCCCCCceeeee-----ecCCeeEEEEeCC-CCCeEEEEecCCCCCCc
Q 013884 53 PSIRFSSDEAVACR--------MATNEIQFFDTTDFPKGILYRL-----RVPGVAAFEVSKA-PGSHVAVFVPESKGSPA 118 (434)
Q Consensus 53 ~~~~~S~d~~~la~--------~~~~~i~v~~~~~~~~~~~~~~-----~~~~v~~~~~sp~-~~~~ia~~~~~~~~~~~ 118 (434)
..+.|++++.+++. ..++.|.+|+..+... ..... ....+..+.++++ +...++ .. ..
T Consensus 21 ~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~----~~---~~ 92 (314)
T 1pjx_A 21 EGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK-TVICKPEVNGYGGIPAGCQCDRDANQLFVA----DM---RL 92 (314)
T ss_dssp EEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE-EEEECCEETTEECCEEEEEECSSSSEEEEE----ET---TT
T ss_pred cCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE-EEEEecccCCCCCCCceEEEecCCCcEEEE----EC---CC
Confidence 37899999998877 4567999999765432 11111 2256788899987 322222 11 12
Q ss_pred eEEEEEcCCCCCCCce-eee--eecccceeEEEECCCCCeEEEEEEecc----cccCceeecceeEEEEeeCCCceeeee
Q 013884 119 SVQIYACGKDLQSQPL-ARR--SFFRCSTVQLNWNRGSTGLLAVAQSDV----DKTNQSYYGESKLNYLTTDGTHEGLVP 191 (434)
Q Consensus 119 ~v~i~~~~~~~~~~~i-~~~--~~~~~~~~~~~ws~~G~~l~~~~~~~~----d~~~~~~~g~~~l~~l~~~~~~~~~v~ 191 (434)
.|.+|+.. .. ...+ ... .........+.+.++|+.. +....+. +...........|+.++..+.....
T Consensus 93 ~l~~~d~~-g~-~~~~~~~~~~~~~~~~~~~i~~d~~g~l~-v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~-- 167 (314)
T 1pjx_A 93 GLLVVQTD-GT-FEEIAKKDSEGRRMQGCNDCAFDYEGNLW-ITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQV-- 167 (314)
T ss_dssp EEEEEETT-SC-EEECCSBCTTSCBCBCCCEEEECTTSCEE-EEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEE--
T ss_pred CEEEEeCC-CC-EEEEEeccCCCccccCCcCEEECCCCCEE-EEecCcccccccccccccCCCCeEEEECCCCCEEEe--
Confidence 57777764 21 1101 000 0011235688999999743 3221110 0000000012346777655332111
Q ss_pred cCCCCCeEEEEEC----cCCCEEEEEEccCCCeEEEEecc--ce-----eEEEcCC---cCeeEEEECCCCCeEEEEecC
Q 013884 192 LRKEGPVHDVQWS----YSGSEFAVVYGFMPASATIFNKK--CR-----PILELGS---GPYNTVRWNPKGKFLCLAGFG 257 (434)
Q Consensus 192 l~~~~~i~~~~ws----pdg~~~av~~g~~~~~i~l~d~~--~~-----~~~~~~~---~~~~~i~~sP~g~~l~~~~~~ 257 (434)
.......+.++|+ |+|+.+.+ +....+.|.+||.+ +. ....+.. .....++++++|++++...
T Consensus 168 ~~~~~~~~~i~~~~~~d~dg~~l~v-~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~-- 244 (314)
T 1pjx_A 168 DTAFQFPNGIAVRHMNDGRPYQLIV-AETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW-- 244 (314)
T ss_dssp EEEESSEEEEEEEECTTSCEEEEEE-EETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE--
T ss_pred ccCCCCcceEEEecccCCCCCEEEE-EECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc--
Confidence 1112356889999 99987665 34556799999875 22 2223322 4467899999998777654
Q ss_pred CCCCeEEEEEccCCEEEEEeeC--CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884 258 NLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 258 ~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~ 315 (434)
.++.|.+||.++++.+..+.. ..+..++++|||++|.+++.. ++.|..|+..
T Consensus 245 -~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~-----~~~l~~~~~~ 298 (314)
T 1pjx_A 245 -GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE-----NNAVWKFEWQ 298 (314)
T ss_dssp -TTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT-----TTEEEEEECS
T ss_pred -CCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCC-----CCeEEEEeCC
Confidence 235899999986655444433 356679999999977766653 6788888864
No 211
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.06 E-value=1.1e-08 Score=97.92 Aligned_cols=255 Identities=8% Similarity=-0.014 Sum_probs=139.1
Q ss_pred eEEecCCCcEEEEEecCC-----CCCCCcEEEEEcCCCcEEEEEeecCcC----CCCCCeeeecCCCcEEEEec---CCe
Q 013884 4 LLTCLRVGLIIQTFQKSS-----TPQEKNVILWKTETGEAVYQLFQKNMT----KTTWPSIRFSSDEAVACRMA---TNE 71 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~-----~~~d~~v~iWd~~~g~~~~~~~~~~~~----~~~~~~~~~S~d~~~la~~~---~~~ 71 (434)
.+.|||||++|....... +..++.|.+||+.+++.+.++...... ...-..+.+||||++++.+. ++.
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 588999999999876211 123678999999999999998643100 01223789999999888763 357
Q ss_pred EEE--EeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCC----CCCCCceeee-eecccce
Q 013884 72 IQF--FDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGK----DLQSQPLARR-SFFRCST 144 (434)
Q Consensus 72 i~v--~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~----~~~~~~i~~~-~~~~~~~ 144 (434)
|.+ +|... ...+...+. +.+.|++...... ...++.+.+.++.. . ++.+... .....+.
T Consensus 149 v~V~~iD~~t-----v~~i~v~~~--~~~~p~g~~~~~~-----~~~dg~~~~vd~~~~~~~~--~~v~~~~t~~i~vg~ 214 (368)
T 1mda_H 149 AGLSVPGASD-----DQLTKSASC--FHIHPGAAATHYL-----GSCPASLAASDLAAAPAAA--GIVGAQCTGAQNCSS 214 (368)
T ss_dssp EEEEETTTEE-----EEEEECSSC--CCCEEEETTEEEC-----CCCTTSCEEEECCSSCCCC--EECCCCSCTTSCBCS
T ss_pred EEEEEEchhh-----ceEEECCCc--eEEccCCCeEEEE-----EcCCCCEEEEECccccccC--CeEEEEeeeeeeCCC
Confidence 888 88755 123333222 1223332222211 11223344444432 0 1111000 0011000
Q ss_pred eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceee---eecCC---------CCCeEEEEECcCCCEEEE
Q 013884 145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL---VPLRK---------EGPVHDVQWSYSGSEFAV 212 (434)
Q Consensus 145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~---v~l~~---------~~~i~~~~wspdg~~~av 212 (434)
.... .+++..+++... + .++.++..+..... +.+.. ......++++||++++.+
T Consensus 215 ~P~~-~~~~~~~~~vs~------~-------~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV 280 (368)
T 1mda_H 215 QAAQ-ANYPGMLVWAVA------S-------SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI 280 (368)
T ss_dssp CCEE-ETTTTEEEECBS------S-------CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred Cccc-cccCCEEEEEcC------C-------EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEE
Confidence 0112 455555544311 1 24555543321111 11110 112223789999999887
Q ss_pred EEc-c-C-----CCeEEEEecccee-EEEcC-CcCeeEEEECCCCCeEEEEec-CCCCCeEEEEEccCCEEEEEeeCC-C
Q 013884 213 VYG-F-M-----PASATIFNKKCRP-ILELG-SGPYNTVRWNPKGKFLCLAGF-GNLPGDMAFWDYVDGKQLGTTRAE-C 281 (434)
Q Consensus 213 ~~g-~-~-----~~~i~l~d~~~~~-~~~~~-~~~~~~i~~sP~g~~l~~~~~-~~~~g~i~iwd~~~~~~i~~~~~~-~ 281 (434)
... . . ...+.++|+.... +..+. ......|.|+|||++++++.. + +++|.++|+.+++.+.++... .
T Consensus 281 ~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~--~~~VsVID~~t~kvv~~I~vg~~ 358 (368)
T 1mda_H 281 LTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAG--TEVLDIYDAASDQDQSSVELDKG 358 (368)
T ss_dssp EEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETT--TTEEEEEESSSCEEEEECCCCSC
T ss_pred EeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCC--CCeEEEEECCCCcEEEEEECCCC
Confidence 433 1 1 2355699997543 44442 224678999999996555553 2 369999999999999888754 3
Q ss_pred ceEEEEC
Q 013884 282 SVTSEWS 288 (434)
Q Consensus 282 ~~~~~ws 288 (434)
...+++.
T Consensus 359 P~~i~~~ 365 (368)
T 1mda_H 359 PESLSVQ 365 (368)
T ss_dssp CCEEECC
T ss_pred CCEEEee
Confidence 4445544
No 212
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.04 E-value=2.7e-07 Score=85.70 Aligned_cols=227 Identities=8% Similarity=0.031 Sum_probs=132.7
Q ss_pred eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCc
Q 013884 4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKG 83 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~ 83 (434)
+..|+|++..|..... .++.|..||..+++. ..+... ..+.++.|++||++++.. ++.|.+||.......
T Consensus 17 gp~w~~~~~~l~~~d~----~~~~i~~~d~~~~~~-~~~~~~----~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 17 SPVWEEVSNSLLFVDI----PAKKVCRWDSFTKQV-QRVTMD----APVSSVALRQSGGYVATI-GTKFCALNWKEQSAV 86 (297)
T ss_dssp EEEEETTTTEEEEEET----TTTEEEEEETTTCCE-EEEECS----SCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEE
T ss_pred CCeEECCCCEEEEEEC----CCCEEEEEECCCCcE-EEEeCC----CceEEEEECCCCCEEEEE-CCeEEEEECCCCcEE
Confidence 5789997766665442 467899999988765 333322 345588999999966654 679999998653321
Q ss_pred eeeeee----cCCeeEEEEeCCCCCeEEEEecCCC---CCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013884 84 ILYRLR----VPGVAAFEVSKAPGSHVAVFVPESK---GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL 156 (434)
Q Consensus 84 ~~~~~~----~~~v~~~~~sp~~~~~ia~~~~~~~---~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l 156 (434)
...... ...+.++.++|++.-.++....... .......||.+.. ...+............+.|+|+|+.|
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~---~g~~~~~~~~~~~pngi~~spdg~~l 163 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP---DHHVKKYFDQVDISNGLDWSLDHKIF 163 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT---TSCEEEEEEEESBEEEEEECTTSCEE
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC---CCCEEEEeeccccccceEEcCCCCEE
Confidence 111111 1236788999985433332221100 1123446777654 22222221122234579999999987
Q ss_pred EEEEEecccccCceeecceeEEEEeeC---CCc---eeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-c
Q 013884 157 LAVAQSDVDKTNQSYYGESKLNYLTTD---GTH---EGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-C 228 (434)
Q Consensus 157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~---~~~---~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~ 228 (434)
++..+. .. .|+.++.. +.. .....+. ..+....++++++|+..+ +....+.|..||.+ +
T Consensus 164 yv~~~~----~~-------~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwv--a~~~~~~v~~~d~~tG 230 (297)
T 3g4e_A 164 YYIDSL----SY-------SVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWV--ACYNGGRVIRLDPVTG 230 (297)
T ss_dssp EEEEGG----GT-------EEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEE--EEETTTEEEEECTTTC
T ss_pred EEecCC----CC-------cEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEE--EEcCCCEEEEEcCCCc
Confidence 664211 11 23433321 111 1111222 135667899999997555 34456789999987 6
Q ss_pred eeEEEc--CCcCeeEEEEC-CCCCeEEEEec
Q 013884 229 RPILEL--GSGPYNTVRWN-PKGKFLCLAGF 256 (434)
Q Consensus 229 ~~~~~~--~~~~~~~i~~s-P~g~~l~~~~~ 256 (434)
+.+..+ +...+++++|+ |+++.|.+++.
T Consensus 231 ~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 231 KRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp CEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred eEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 655544 44678899998 89987766653
No 213
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.00 E-value=2.7e-06 Score=78.11 Aligned_cols=248 Identities=8% Similarity=-0.064 Sum_probs=145.0
Q ss_pred CCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeee--ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCC
Q 013884 51 TWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRL--RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGK 127 (434)
Q Consensus 51 ~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~ 127 (434)
.+.++.++++|++.+... ++.|.+|+.. .. ...... ....+..+.+++++...++ . ...+.|..|+...
T Consensus 16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-~~~~~~~~~~~~~~~i~~~~~g~l~v~----~--~~~~~i~~~~~~g 87 (299)
T 2z2n_A 16 GPYGITVSDKGKVWITQHKANMISCINLD-GK-ITEYPLPTPDAKVMCLTISSDGEVWFT----E--NAANKIGRITKKG 87 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEECSSTTCCEEEEEECTTSCEEEE----E--TTTTEEEEECTTS
T ss_pred CccceEECCCCCEEEEecCCCcEEEEcCC-CC-eEEecCCcccCceeeEEECCCCCEEEe----C--CCCCeEEEECCCC
Confidence 344889999999887765 5799999977 22 121121 1346788888887432222 1 1124566666431
Q ss_pred CCCCCceeeeee--cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEEC
Q 013884 128 DLQSQPLARRSF--FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWS 204 (434)
Q Consensus 128 ~~~~~~i~~~~~--~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~ws 204 (434)
.+..... .......+.+.++|... +. .. +...++.++..+. ...+.+. ....++.++++
T Consensus 88 -----~~~~~~~~~~~~~~~~i~~~~~g~l~-v~-~~----------~~~~i~~~d~~g~-~~~~~~~~~~~~~~~i~~~ 149 (299)
T 2z2n_A 88 -----IIKEYTLPNPDSAPYGITEGPNGDIW-FT-EM----------NGNRIGRITDDGK-IREYELPNKGSYPSFITLG 149 (299)
T ss_dssp -----CEEEEECSSTTCCEEEEEECTTSCEE-EE-ET----------TTTEEEEECTTCC-EEEEECSSTTCCEEEEEEC
T ss_pred -----cEEEEeCCCcCCCceeeEECCCCCEE-EE-ec----------CCceEEEECCCCC-EEEecCCCCCCCCceEEEc
Confidence 1211111 22345678888888633 22 11 1113555555333 2222222 24568999999
Q ss_pred cCCCEEEEEEccCCCeEEEEeccceeEEE-c--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE-eeC-
Q 013884 205 YSGSEFAVVYGFMPASATIFNKKCRPILE-L--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT-TRA- 279 (434)
Q Consensus 205 pdg~~~av~~g~~~~~i~l~d~~~~~~~~-~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~-~~~- 279 (434)
|+|+.++ +....+.+..||..+..... + .......++++|+|++.++.. ..+.|.+||. +++.... ...
T Consensus 150 ~~g~l~v--~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~---~~~~i~~~~~-~g~~~~~~~~~~ 223 (299)
T 2z2n_A 150 SDNALWF--TENQNNAIGRITESGDITEFKIPTPASGPVGITKGNDDALWFVEI---IGNKIGRITT-SGEITEFKIPTP 223 (299)
T ss_dssp TTSCEEE--EETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEET---TTTEEEEECT-TCCEEEEECSST
T ss_pred CCCCEEE--EeCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCCCCEEEEcc---CCceEEEECC-CCcEEEEECCCC
Confidence 9997655 34556789999984433221 2 234567899999999665543 2368999999 6653322 221
Q ss_pred -CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee-e--cccceeeEEEcCCC
Q 013884 280 -ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK-M--FDKLFQAEWKPVSP 337 (434)
Q Consensus 280 -~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~-~--~~~~~~~~w~p~~~ 337 (434)
..+..++++++|+.+++... ++.|.+|+.+|...... . ......+.+ +++.
T Consensus 224 ~~~~~~i~~~~~g~l~v~~~~------~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~-~~g~ 278 (299)
T 2z2n_A 224 NARPHAITAGAGIDLWFTEWG------ANKIGRLTSNNIIEEYPIQIKSAEPHGICF-DGET 278 (299)
T ss_dssp TCCEEEEEECSTTCEEEEETT------TTEEEEEETTTEEEEEECSSSSCCEEEEEE-CSSC
T ss_pred CCCceeEEECCCCCEEEeccC------CceEEEECCCCceEEEeCCCCCCccceEEe-cCCC
Confidence 25566999999996655545 78999999877543221 1 134556666 5543
No 214
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.00 E-value=1.1e-07 Score=89.67 Aligned_cols=203 Identities=12% Similarity=0.087 Sum_probs=121.5
Q ss_pred ceEEEEEcCCCCCCCceeeee-ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC---
Q 013884 118 ASVQIYACGKDLQSQPLARRS-FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR--- 193 (434)
Q Consensus 118 ~~v~i~~~~~~~~~~~i~~~~-~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~--- 193 (434)
+.|.+|+..+ ++.+.... ..-.....++++++|+ |++ +.. .+ ..++.++..+.......+.
T Consensus 69 ~~i~~~d~~~---g~~~~~~~~~~~~~p~gia~d~~g~-l~v-~d~-~~---------~~v~~~~~~g~~~~~~~~~~~~ 133 (329)
T 3fvz_A 69 DTILVIDPNN---AEILQSSGKNLFYLPHGLSIDTDGN-YWV-TDV-AL---------HQVFKLDPHSKEGPLLILGRSM 133 (329)
T ss_dssp CCEEEECTTT---CCEEEEECTTTCSSEEEEEECTTSC-EEE-EET-TT---------TEEEEECTTCSSCCSEEESBTT
T ss_pred CcEEEEECCC---CeEEeccCCCccCCceEEEECCCCC-EEE-EEC-CC---------CEEEEEeCCCCeEEEEEecccC
Confidence 4677777654 33332211 1112456788999998 333 222 11 1245555444311222221
Q ss_pred -------CCCCeEEEEECc-CCCEEEEEEc-cCCCeEEEEeccceeEEEcCC------------cCeeEEEECCCCCeEE
Q 013884 194 -------KEGPVHDVQWSY-SGSEFAVVYG-FMPASATIFNKKCRPILELGS------------GPYNTVRWNPKGKFLC 252 (434)
Q Consensus 194 -------~~~~i~~~~wsp-dg~~~av~~g-~~~~~i~l~d~~~~~~~~~~~------------~~~~~i~~sP~g~~l~ 252 (434)
.-.....++++| +|..++ +. ..++.|.+||.++..+..+.. ...+.|+++|++..|+
T Consensus 134 ~~g~~~~~~~~P~~ia~~~~~g~lyv--~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~ 211 (329)
T 3fvz_A 134 QPGSDQNHFCQPTDVAVEPSTGAVFV--SDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLC 211 (329)
T ss_dssp BCCCSTTCCSSEEEEEECTTTCCEEE--EECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEE
T ss_pred CCCCCccccCCCcEEEEeCCCCeEEE--EeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEE
Confidence 123578999999 665554 34 357899999988777776631 1257899999955555
Q ss_pred EEecCCCCCeEEEEEccCCEEEEEeeCC----CceEEEECCCCCEEEEEEcCCc-eeeCCcEEEEee-cCceeeee----
Q 013884 253 LAGFGNLPGDMAFWDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPR-LQIDNGIKIFHH-NGSLFFKK---- 322 (434)
Q Consensus 253 ~~~~~~~~g~i~iwd~~~~~~i~~~~~~----~~~~~~wspdg~~l~tas~~~r-l~~D~~i~iw~~-~g~~~~~~---- 322 (434)
++..++ +.|.+||.++++.+..+... .+..++|+| |..+.+.+...- -..++.|++|++ +|+++...
T Consensus 212 v~d~~~--~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~ 288 (329)
T 3fvz_A 212 VADREN--GRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR 288 (329)
T ss_dssp EEETTT--TEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSS
T ss_pred EEECCC--CEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCC
Confidence 565443 79999999988888877432 455689999 444333322000 001458999996 67666553
Q ss_pred -ecccceeeEEEcCCCCCCC
Q 013884 323 -MFDKLFQAEWKPVSPDKFG 341 (434)
Q Consensus 323 -~~~~~~~~~w~p~~~~~~~ 341 (434)
.......+++.|++ .+|-
T Consensus 289 ~~~~~p~~ia~~~dG-~lyv 307 (329)
T 3fvz_A 289 KHFDMPHDIVASEDG-TVYI 307 (329)
T ss_dssp SCCSSEEEEEECTTS-EEEE
T ss_pred CccCCeeEEEECCCC-CEEE
Confidence 34457788898887 4443
No 215
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.99 E-value=6e-08 Score=97.05 Aligned_cols=262 Identities=10% Similarity=0.097 Sum_probs=155.5
Q ss_pred CCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeee-c-CCCcEEEEec------------------
Q 013884 9 RVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRF-S-SDEAVACRMA------------------ 68 (434)
Q Consensus 9 P~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~-S-~d~~~la~~~------------------ 68 (434)
|||+||..... .+..|.+.|+.+.++...+..... .....+.+ + ||++++....
T Consensus 99 ~DG~~lfVnd~----~~~rVavIdl~t~~~~~ii~ip~g--~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~ 172 (595)
T 1fwx_A 99 YDGRFLFMNDK----ANTRVARVRCDVMKCDAILEIPNA--KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVAN 172 (595)
T ss_dssp EEEEEEEEEET----TTTEEEEEETTTTEEEEEEECSSC--CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGG
T ss_pred cCCCEEEEEcC----CCCEEEEEECCCceEeeEEeCCCC--CCCcceeeeecCCCcEEEEecccccccCCCCcccccccc
Confidence 39999998762 356799999999998775533321 23336676 5 8999887763
Q ss_pred -CCeEEEEeCCCCCCceeeeeec-CCeeEEEEeCCCCCeEEEEec-CCC--------CCCceEEEEEcCCCCCCCceeee
Q 013884 69 -TNEIQFFDTTDFPKGILYRLRV-PGVAAFEVSKAPGSHVAVFVP-ESK--------GSPASVQIYACGKDLQSQPLARR 137 (434)
Q Consensus 69 -~~~i~v~~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~~ia~~~~-~~~--------~~~~~v~i~~~~~~~~~~~i~~~ 137 (434)
++.+.+.|..... ...++.. .....+.++|++...+..... +.. .....|.+.+.+.. ..
T Consensus 173 ~~~~vtvID~~t~~--v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~---~~---- 243 (595)
T 1fwx_A 173 YVNVFTAVDADKWE--VAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEI---EK---- 243 (595)
T ss_dssp EEEEEEEEETTTTE--EEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHH---HH----
T ss_pred cCceEEEEECCCCe--EEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccce---eE----
Confidence 2478888887643 3444444 234567789984332222111 110 11134555554331 00
Q ss_pred eecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCC--C-c-eeeeecCCCCCeEEEEECcCCCEEEEE
Q 013884 138 SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG--T-H-EGLVPLRKEGPVHDVQWSYSGSEFAVV 213 (434)
Q Consensus 138 ~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~--~-~-~~~v~l~~~~~i~~~~wspdg~~~av~ 213 (434)
..++|+++.+ + .+-.++... . . ...++.. ...+.+.++|||+++++
T Consensus 244 -----------~v~~Gk~~~i--------------~--~V~VID~~~~~~~~~~~~Ipvg--~~PhGv~~sPDGk~v~V- 293 (595)
T 1fwx_A 244 -----------AIAAGDYQEL--------------N--GVKVVDGRKEASSLFTRYIPIA--NNPHGCNMAPDKKHLCV- 293 (595)
T ss_dssp -----------HHHHTCSEEE--------------T--TEEEEECSGGGCCSSEEEEEEE--SSCCCEEECTTSSEEEE-
T ss_pred -----------eccCCCeeEE--------------C--cEEEEeCcccCCceeEEEEecC--CCceEEEEcCCCCEEEE-
Confidence 1223443221 1 123333322 1 1 1233332 35688999999998887
Q ss_pred EccCCCeEEEEeccce-------------eEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC--------
Q 013884 214 YGFMPASATIFNKKCR-------------PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD-------- 270 (434)
Q Consensus 214 ~g~~~~~i~l~d~~~~-------------~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~-------- 270 (434)
++....++.++|.... .+.+. +.++ ..++|+|+| ++.+..+ ++++|.+||+++
T Consensus 294 ~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP-~h~aF~~dG-~aY~t~~--ldsqV~kwdi~~a~~~~~g~ 369 (595)
T 1fwx_A 294 AGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP-LHTAFDGRG-NAYTSLF--LDSQVVKWNIEDAIRAYAGE 369 (595)
T ss_dssp ECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCE-EEEEECTTS-EEEEEET--TTTEEEEEEHHHHHHHHHTC
T ss_pred eCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCc-ceEEECCCC-eEEEEEe--cCCcEEEEEhhHhhhhhccc
Confidence 5777779999998743 22232 3333 568999999 6666654 557999999887
Q ss_pred --CEEEEEeeCC-CceE------EEECCCCCEEEEEEcCCceee-------CCcEEEEeecCcee
Q 013884 271 --GKQLGTTRAE-CSVT------SEWSPDGRYFMTATTAPRLQI-------DNGIKIFHHNGSLF 319 (434)
Q Consensus 271 --~~~i~~~~~~-~~~~------~~wspdg~~l~tas~~~rl~~-------D~~i~iw~~~g~~~ 319 (434)
.+.+.++.-+ .+-+ ...+|||++|+++....+=|. -..-.|+|++|..+
T Consensus 370 ~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 370 KVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp SCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred ccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 5677777665 2222 345899999999876421110 01128899987643
No 216
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.92 E-value=2.4e-06 Score=80.42 Aligned_cols=218 Identities=8% Similarity=0.031 Sum_probs=130.6
Q ss_pred eeeecCCCcEEEE-e-cCCeEEEEeCCCCCCceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013884 54 SIRFSSDEAVACR-M-ATNEIQFFDTTDFPKGILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130 (434)
Q Consensus 54 ~~~~S~d~~~la~-~-~~~~i~v~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~ 130 (434)
.+.|+|++..++. . .++.|.+|+..... ...+. ...+..+.++|++. +++. . . ..|.+|+..+
T Consensus 53 gp~~~~~~~~l~~~d~~~~~i~~~d~~~~~---~~~~~~~~~v~~i~~~~dg~-l~v~-~-~-----~gl~~~d~~~--- 118 (326)
T 2ghs_A 53 GPTFDPASGTAWWFNILERELHELHLASGR---KTVHALPFMGSALAKISDSK-QLIA-S-D-----DGLFLRDTAT--- 118 (326)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTE---EEEEECSSCEEEEEEEETTE-EEEE-E-T-----TEEEEEETTT---
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEECCCCc---EEEEECCCcceEEEEeCCCe-EEEE-E-C-----CCEEEEECCC---
Confidence 6899998654444 3 45799999987632 12222 24688899999843 3322 1 1 2377787755
Q ss_pred CCceeeeee----cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcC
Q 013884 131 SQPLARRSF----FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS 206 (434)
Q Consensus 131 ~~~i~~~~~----~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspd 206 (434)
+........ .......+.++++|+. ++.... .+. ......||.++ .+.. ..+ .......+.++|+||
T Consensus 119 g~~~~~~~~~~~~~~~~~~~i~~d~~G~l-~v~~~~-~~~----~~~~~~l~~~~-~g~~-~~~-~~~~~~~~~i~~s~d 189 (326)
T 2ghs_A 119 GVLTLHAELESDLPGNRSNDGRMHPSGAL-WIGTMG-RKA----ETGAGSIYHVA-KGKV-TKL-FADISIPNSICFSPD 189 (326)
T ss_dssp CCEEEEECSSTTCTTEEEEEEEECTTSCE-EEEEEE-TTC----CTTCEEEEEEE-TTEE-EEE-EEEESSEEEEEECTT
T ss_pred CcEEEEeeCCCCCCCCCCCCEEECCCCCE-EEEeCC-CcC----CCCceEEEEEe-CCcE-EEe-eCCCcccCCeEEcCC
Confidence 222111111 0123567899999984 332211 110 01223577777 4322 111 111235678999999
Q ss_pred CCEEEEEEccCCCeEEEEecc--ce-------eEEEcC--CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEE
Q 013884 207 GSEFAVVYGFMPASATIFNKK--CR-------PILELG--SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG 275 (434)
Q Consensus 207 g~~~av~~g~~~~~i~l~d~~--~~-------~~~~~~--~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~ 275 (434)
|+.++++ ....+.|.+||.. .. .+..+. ......+++.++|++.+... + .+.|.+||. +++.+.
T Consensus 190 g~~lyv~-~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~-~--~~~v~~~d~-~g~~~~ 264 (326)
T 2ghs_A 190 GTTGYFV-DTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW-G--EGAVDRYDT-DGNHIA 264 (326)
T ss_dssp SCEEEEE-ETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE-T--TTEEEEECT-TCCEEE
T ss_pred CCEEEEE-ECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe-C--CCEEEEECC-CCCEEE
Confidence 9988774 4456799999974 22 122332 34457899999998666543 2 258999998 566666
Q ss_pred EeeCC--CceEEEEC-CCCCEEEEEEc
Q 013884 276 TTRAE--CSVTSEWS-PDGRYFMTATT 299 (434)
Q Consensus 276 ~~~~~--~~~~~~ws-pdg~~l~tas~ 299 (434)
.+..+ .+..++|+ ||++.|++++.
T Consensus 265 ~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 265 RYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred EEECCCCCcEEEEEecCCCCEEEEEec
Confidence 55544 46779998 99998877766
No 217
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.91 E-value=1.9e-06 Score=81.20 Aligned_cols=225 Identities=10% Similarity=-0.013 Sum_probs=131.0
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCC
Q 013884 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPK 82 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~ 82 (434)
.+..|+|++..|+.... .++.|.+||..+++. ..+... ..+.++.|++||++++.. .+.|.+||..+...
T Consensus 52 egp~~~~~~~~l~~~d~----~~~~i~~~d~~~~~~-~~~~~~----~~v~~i~~~~dg~l~v~~-~~gl~~~d~~~g~~ 121 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNI----LERELHELHLASGRK-TVHALP----FMGSALAKISDSKQLIAS-DDGLFLRDTATGVL 121 (326)
T ss_dssp EEEEEETTTTEEEEEEG----GGTEEEEEETTTTEE-EEEECS----SCEEEEEEEETTEEEEEE-TTEEEEEETTTCCE
T ss_pred cCCeEeCCCCEEEEEEC----CCCEEEEEECCCCcE-EEEECC----CcceEEEEeCCCeEEEEE-CCCEEEEECCCCcE
Confidence 46789998766655442 357899999988754 334322 345588999999988865 45699999766432
Q ss_pred ceeeeee----cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013884 83 GILYRLR----VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 83 ~~~~~~~----~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~ 158 (434)
....... ...+.++.++|++...++.... ........||.+.. ++.. ...........+.|+++|+.|++
T Consensus 122 ~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~--~~~~~~~~l~~~~~---g~~~-~~~~~~~~~~~i~~s~dg~~lyv 195 (326)
T 2ghs_A 122 TLHAELESDLPGNRSNDGRMHPSGALWIGTMGR--KAETGAGSIYHVAK---GKVT-KLFADISIPNSICFSPDGTTGYF 195 (326)
T ss_dssp EEEECSSTTCTTEEEEEEEECTTSCEEEEEEET--TCCTTCEEEEEEET---TEEE-EEEEEESSEEEEEECTTSCEEEE
T ss_pred EEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCC--cCCCCceEEEEEeC---CcEE-EeeCCCcccCCeEEcCCCCEEEE
Confidence 1111110 1247788999985422222111 11122334555433 2221 11111123457899999998766
Q ss_pred EEEecccccCceeecceeEEEEeeC--CC-c----eeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee
Q 013884 159 VAQSDVDKTNQSYYGESKLNYLTTD--GT-H----EGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP 230 (434)
Q Consensus 159 ~~~~~~d~~~~~~~g~~~l~~l~~~--~~-~----~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~ 230 (434)
..+. ...|+.++.. .+ . .....+. ..+....++++++|+.++. ....+.|.+||.+++.
T Consensus 196 ~~~~-----------~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva--~~~~~~v~~~d~~g~~ 262 (326)
T 2ghs_A 196 VDTK-----------VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNA--RWGEGAVDRYDTDGNH 262 (326)
T ss_dssp EETT-----------TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEE--EETTTEEEEECTTCCE
T ss_pred EECC-----------CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEE--EeCCCEEEEECCCCCE
Confidence 4211 1135555543 11 1 1111222 2345678999999976553 3345689999987665
Q ss_pred EEEc--CCcCeeEEEEC-CCCCeEEEEec
Q 013884 231 ILEL--GSGPYNTVRWN-PKGKFLCLAGF 256 (434)
Q Consensus 231 ~~~~--~~~~~~~i~~s-P~g~~l~~~~~ 256 (434)
+..+ +...+.+++|+ |+++.|.++..
T Consensus 263 ~~~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 263 IARYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred EEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence 5544 45568899998 99987766543
No 218
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.91 E-value=8e-07 Score=82.79 Aligned_cols=225 Identities=10% Similarity=0.020 Sum_probs=128.7
Q ss_pred eeeecCCCcEEEEe--cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC
Q 013884 54 SIRFSSDEAVACRM--ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS 131 (434)
Q Consensus 54 ~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~ 131 (434)
.+.|++||+.|+.. .++.|..|+... . ..........+..+.++|++ .++++- .....|.+|+... . .
T Consensus 49 gp~~~~~g~~l~~~d~~~~~i~~~~~~g-~-~~~~~~~~~~~~gl~~d~dG-~l~v~~-----~~~~~v~~~~~~g-~-~ 118 (305)
T 3dr2_A 49 GPAWWEAQRTLVWSDLVGRRVLGWREDG-T-VDVLLDATAFTNGNAVDAQQ-RLVHCE-----HGRRAITRSDADG-Q-A 118 (305)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEETTS-C-EEEEEESCSCEEEEEECTTS-CEEEEE-----TTTTEEEEECTTS-C-E
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEeCCC-C-EEEEeCCCCccceeeECCCC-CEEEEE-----CCCCEEEEECCCC-C-E
Confidence 68999999954444 457999998732 2 22233334567889999984 333321 1123566666531 0 1
Q ss_pred Cceeeeeec--ccceeEEEECCCCCeEEEEEEecccccCce--------eecceeEEEEeeCCCceeeeecCCCCCeEEE
Q 013884 132 QPLARRSFF--RCSTVQLNWNRGSTGLLAVAQSDVDKTNQS--------YYGESKLNYLTTDGTHEGLVPLRKEGPVHDV 201 (434)
Q Consensus 132 ~~i~~~~~~--~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~--------~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~ 201 (434)
..+...... ......+.+.++|+.. + ++... .+... -.+...||.++..++....+. .....+.+
T Consensus 119 ~~~~~~~~~~~~~~~~~i~~d~dG~l~-~-td~~~-g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl 193 (305)
T 3dr2_A 119 HLLVGRYAGKRLNSPNDLIVARDGAIW-F-TDPPF-GLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGL 193 (305)
T ss_dssp EEEECEETTEECSCCCCEEECTTSCEE-E-ECCSG-GGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEE
T ss_pred EEEEeccCCCccCCCCCEEECCCCCEE-E-eCcCC-CccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcce
Confidence 111110000 0123468899999843 2 21100 00000 012245788876433222332 23456789
Q ss_pred EECcCCCEEEEEEccC----CCeEEEEeccceeE------EEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013884 202 QWSYSGSEFAVVYGFM----PASATIFNKKCRPI------LELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 271 (434)
Q Consensus 202 ~wspdg~~~av~~g~~----~~~i~l~d~~~~~~------~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~ 271 (434)
+|+|||+.++++.... ...|.+||+....+ .....+....+++.++|++.+ +. . +.|.+||. ++
T Consensus 194 ~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~-~---~gv~~~~~-~g 267 (305)
T 3dr2_A 194 AFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SS-G---TGVCVFDS-DG 267 (305)
T ss_dssp EECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CC-S---SEEEEECT-TS
T ss_pred EEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ec-C---CcEEEECC-CC
Confidence 9999999887753321 26899998753221 122344456799999999544 33 1 25999998 45
Q ss_pred EEEEEeeCC-CceEEEECCCCCEEEEEEc
Q 013884 272 KQLGTTRAE-CSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 272 ~~i~~~~~~-~~~~~~wspdg~~l~tas~ 299 (434)
+.+..+..+ .+..++|+||++.|..++.
T Consensus 268 ~~~~~~~~~~~~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 268 QLLGHIPTPGTASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp CEEEEEECSSCCCEEEECTTSCEEEEEET
T ss_pred CEEEEEECCCceeEEEEeCCCCEEEEEcC
Confidence 565555443 5667999999999888876
No 219
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.89 E-value=3.8e-07 Score=86.65 Aligned_cols=259 Identities=8% Similarity=-0.032 Sum_probs=140.4
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeec----CcCCCCCCeeeecCCCcEEEEec------CCe
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQK----NMTKTTWPSIRFSSDEAVACRMA------TNE 71 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~----~~~~~~~~~~~~S~d~~~la~~~------~~~ 71 (434)
+..|++||+|+.+++..+.. ++.++||.+.+|+ +..|... ..+......+++++++++.+.-. +..
T Consensus 19 p~~va~~~~g~~~v~~~~~~---~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 19 PGNITLTPDGRLFLSLHQFY---QPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp EEEEEECTTSCEEEEECGGG---CCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred cceEEECCCCCEEEEeCCCC---CCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence 46789999999999876432 2225666655664 3444321 00113445789999998766542 479
Q ss_pred EEEEeCCCCCCceeeeee------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013884 72 IQFFDTTDFPKGILYRLR------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV 145 (434)
Q Consensus 72 i~v~~~~~~~~~~~~~~~------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~ 145 (434)
|.+||..+........+. ...+..++++|+++ .+ ++...+.+....|.+|++.. ++.......+..-..
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g-~~-yvtd~~~~~~~~i~v~d~~~---g~~~r~~~~~~~~~~ 169 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHN-FV-YISDPAPDDKAALIRVDLQT---GLAARVLQGYPGIAP 169 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTT-EE-EEEECCSGGGCEEEEEETTT---CCEEEECTTCTTTSC
T ss_pred EEEEECCCCeEEEEEECChhhcccccccceEEEecCCC-EE-EEEcCccCCCCeEEEEECCC---CCEEEEecCCCcccc
Confidence 999998764321222221 12357888988633 22 22221111345788888865 333222211100000
Q ss_pred -EEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 013884 146 -QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIF 224 (434)
Q Consensus 146 -~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~ 224 (434)
...+..+|..+ +..+..+. .. .+ ...+..++|+|||+.+++. ......+..+
T Consensus 170 ~~~~~~~~g~~~---------------------~~~~~~g~-~~--~~--~~~~~gia~s~dg~~ly~~-~~~~~~l~~~ 222 (343)
T 2qe8_A 170 EDIDLVIDGVPV---------------------QIGQPDGT-VI--RP--HLGVNGIVLDAENEWLYLS-PMHSTSMYRI 222 (343)
T ss_dssp CSCCCEETTEEC---------------------BEECTTSC-EE--CC--CCCEEEEEECTTSCEEEEE-ESSCSEEEEE
T ss_pred cccceeECCEEE---------------------EeccCCCc-ee--ce--ecccceeEeccCCCEEEEE-eCCCCeEEEE
Confidence 01111122211 11111111 00 01 1246789999999988863 2223366666
Q ss_pred eccce------------eEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC---CCceEEEEC
Q 013884 225 NKKCR------------PILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA---ECSVTSEWS 288 (434)
Q Consensus 225 d~~~~------------~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~---~~~~~~~ws 288 (434)
+.... .+..+ +.+....++++++|+++++.. ..+.|.+||.++++....... ..+..++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~---~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~ 299 (343)
T 2qe8_A 223 KSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDL---AHSAIGVITSADRAYKLLVTDEKLSWTDSFNFG 299 (343)
T ss_dssp EHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEG---GGTEEEEEETTTTEEEEEEECGGGSCEEEEEEC
T ss_pred EHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEcc---CCCeEEEEECCCCCEEEEEECCceecCCeeEEC
Confidence 53210 01111 233456799999998776654 236999999866654333322 256679999
Q ss_pred CCCCEEEEEEc
Q 013884 289 PDGRYFMTATT 299 (434)
Q Consensus 289 pdg~~l~tas~ 299 (434)
++|+.++++..
T Consensus 300 ~~g~l~v~~~~ 310 (343)
T 2qe8_A 300 SDGYLYFDCNQ 310 (343)
T ss_dssp TTSCEEEEECC
T ss_pred CCCcEEEEeCc
Confidence 99998877765
No 220
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.88 E-value=4e-07 Score=83.83 Aligned_cols=181 Identities=10% Similarity=0.115 Sum_probs=123.5
Q ss_pred CCCceEEEEEcCCCCCCCceeeeeecc-cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC
Q 013884 115 GSPASVQIYACGKDLQSQPLARRSFFR-CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR 193 (434)
Q Consensus 115 ~~~~~v~i~~~~~~~~~~~i~~~~~~~-~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~ 193 (434)
..++.|.+|+..+ ++.+-+..... .....+.+.|+|+.++ + .+. .++.++..+...-.+...
T Consensus 12 ~~~~~v~~~d~~t---G~~~w~~~~~~~~~~~~~~~~pdG~ilv--s---~~~---------~V~~~d~~G~~~W~~~~~ 74 (276)
T 3no2_A 12 SGWNKIAIINKDT---KEIVWEYPLEKGWECNSVAATKAGEILF--S---YSK---------GAKMITRDGRELWNIAAP 74 (276)
T ss_dssp TTCSEEEEEETTT---TEEEEEEECCTTCCCCEEEECTTSCEEE--E---CBS---------EEEEECTTSCEEEEEECC
T ss_pred CCCCEEEEEECCC---CeEEEEeCCCccCCCcCeEECCCCCEEE--e---CCC---------CEEEECCCCCEEEEEcCC
Confidence 3456777888766 56665555443 3566788999998654 1 111 244444433322222332
Q ss_pred CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEcC--C------cCeeEEEECCCCCeEEEEecCCCCCeEEE
Q 013884 194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG--S------GPYNTVRWNPKGKFLCLAGFGNLPGDMAF 265 (434)
Q Consensus 194 ~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~~--~------~~~~~i~~sP~g~~l~~~~~~~~~g~i~i 265 (434)
....++++++.|||+.++..++. ++.+..+|.+++.+.++. . .....+.+.++|++|++.. .++.|..
T Consensus 75 ~~~~~~~~~~~~dG~~lv~~~~~-~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~---~~~~v~~ 150 (276)
T 3no2_A 75 AGCEMQTARILPDGNALVAWCGH-PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF---ATSEVRE 150 (276)
T ss_dssp TTCEEEEEEECTTSCEEEEEEST-TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET---TTTEEEE
T ss_pred CCccccccEECCCCCEEEEecCC-CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEec---CCCEEEE
Confidence 23468899999999988853331 568888888887766552 1 1344578899999998765 4579999
Q ss_pred EEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeeee
Q 013884 266 WDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKKM 323 (434)
Q Consensus 266 wd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~~~ 323 (434)
||.+ ++.+..+..+ .+..+...++|+.++++.. ++.|..+|.. |+++.+..
T Consensus 151 ~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~------~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 151 IAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGD------AHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp ECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBT------TSEEEEECTTTCCEEEEEE
T ss_pred ECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCC------CCeEEEEeCcCCcEEEEec
Confidence 9998 9988888764 4556788999999988877 6778899987 88876654
No 221
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.86 E-value=6.9e-06 Score=74.74 Aligned_cols=249 Identities=10% Similarity=0.026 Sum_probs=142.6
Q ss_pred CcEEEEEecCCCCCCCcEEEEEcCCCcE-------EEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCC
Q 013884 11 GLIIQTFQKSSTPQEKNVILWKTETGEA-------VYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFP 81 (434)
Q Consensus 11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~-------~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~ 81 (434)
|.+|+... .+.|+.+++..... +..... .....+.|++++..|... .++.|.+++.....
T Consensus 1 ~~~l~~~~------~~~I~~~~~~g~~~~~~~~~~~~~~~~-----~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~ 69 (267)
T 1npe_A 1 GTHLLFAQ------TGKIERLPLERNTMKKTEAKAFLHIPA-----KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE 69 (267)
T ss_dssp CEEEEEEE------EEEEEEEEESSSCBCGGGCEEEEEEEE-----EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC
T ss_pred CcEEEEEc------CCeEEEEEecCcccccccceeeecCCC-----CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC
Confidence 56676655 24688888765431 111111 112278999977665554 35799999986533
Q ss_pred CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013884 82 KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ 161 (434)
Q Consensus 82 ~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~ 161 (434)
..............++++|+++. + ++... ....|.++++.. ................+.++|++..|.+...
T Consensus 70 ~~~~~~~~~~~p~~ia~d~~~~~-l-yv~d~---~~~~I~~~~~~g---~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~ 141 (267)
T 1npe_A 70 PTTIIRQDLGSPEGIALDHLGRT-I-FWTDS---QLDRIEVAKMDG---TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDW 141 (267)
T ss_dssp CEEEECTTCCCEEEEEEETTTTE-E-EEEET---TTTEEEEEETTS---CSCEEEECSSCSSEEEEEEETTTTEEEEEEC
T ss_pred cEEEEECCCCCccEEEEEecCCe-E-EEEEC---CCCEEEEEEcCC---CCEEEEEECCCCCccEEEEeeCCCEEEEEEC
Confidence 21111112246778899986332 2 22221 235777777754 1111111111123457888998777665321
Q ss_pred ecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc--CCcCe
Q 013884 162 SDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPY 239 (434)
Q Consensus 162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~--~~~~~ 239 (434)
. . ....|+.+..++.....+....-.....++++|++..+.+. ....+.|..+|..+.....+ ....-
T Consensus 142 ~---~------~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~-d~~~~~I~~~~~~g~~~~~~~~~~~~P 211 (267)
T 1npe_A 142 N---R------DNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWV-DAGTHRAECLNPAQPGRRKVLEGLQYP 211 (267)
T ss_dssp C---S------SSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTEEEEEEEEECCCSE
T ss_pred C---C------CCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEE-ECCCCEEEEEecCCCceEEEecCCCCc
Confidence 1 0 01235566655543222221223456899999998888764 45567999999876543333 11222
Q ss_pred eEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---CceEEEECCCCC
Q 013884 240 NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPDGR 292 (434)
Q Consensus 240 ~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~~~~~~wspdg~ 292 (434)
..++ +++..|.++..++ +.|..+|..+++.+..+... ....+++.||+.
T Consensus 212 ~gi~--~d~~~lyva~~~~--~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 212 FAVT--SYGKNLYYTDWKT--NSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEE--EETTEEEEEETTT--TEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred eEEE--EeCCEEEEEECCC--CeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 3454 4567777777654 69999999999888777543 355688888875
No 222
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.79 E-value=3.9e-06 Score=81.30 Aligned_cols=242 Identities=9% Similarity=0.049 Sum_probs=132.4
Q ss_pred EEec--CCCcEEEEEecCCCCCCCcEEEEEcCCC----cEEEEEeec----CcCCCCCCeeeecCCCcEEEEe-cC----
Q 013884 5 LTCL--RVGLIIQTFQKSSTPQEKNVILWKTETG----EAVYQLFQK----NMTKTTWPSIRFSSDEAVACRM-AT---- 69 (434)
Q Consensus 5 l~fS--P~g~~L~t~~~~~~~~d~~v~iWd~~~g----~~~~~~~~~----~~~~~~~~~~~~S~d~~~la~~-~~---- 69 (434)
..|| ++++||+.-+- .+.+|.|.|+.+. +.+..+... ......-..+..+||| ++++. ++
T Consensus 87 ~~~~~~~~r~~l~v~~l----~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~ 161 (462)
T 2ece_A 87 PNGKPNIERRFLIVPGL----RSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGE 161 (462)
T ss_dssp TTCCTTCCSCEEEEEBT----TTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSC
T ss_pred cccCCCccCCEEEEccC----CCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCC
Confidence 3458 99999987552 4688999999765 555555200 0000001145788999 55544 43
Q ss_pred --CeEEEEeCCCCCCceeeeee-cC-C-eeEEEEeCCCCCeEEE-E----------ecCC--CCCCceEEEEEcCCCCCC
Q 013884 70 --NEIQFFDTTDFPKGILYRLR-VP-G-VAAFEVSKAPGSHVAV-F----------VPES--KGSPASVQIYACGKDLQS 131 (434)
Q Consensus 70 --~~i~v~~~~~~~~~~~~~~~-~~-~-v~~~~~sp~~~~~ia~-~----------~~~~--~~~~~~v~i~~~~~~~~~ 131 (434)
+.|.++|..++......... .. . -.++.|+|+.+.++.. | .++. .....+|.+|++.. .
T Consensus 162 ~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~---~ 238 (462)
T 2ece_A 162 GPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK---R 238 (462)
T ss_dssp SCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT---T
T ss_pred CCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC---C
Confidence 58999999886642222211 11 1 2357889986533322 1 0000 01246899999987 5
Q ss_pred Cceeeeeecc--cceeEE--EECCCCCeEEEEEEecc-cccCcee---ecceeE---EEEeeCCCc-eeeee-cCC----
Q 013884 132 QPLARRSFFR--CSTVQL--NWNRGSTGLLAVAQSDV-DKTNQSY---YGESKL---NYLTTDGTH-EGLVP-LRK---- 194 (434)
Q Consensus 132 ~~i~~~~~~~--~~~~~~--~ws~~G~~l~~~~~~~~-d~~~~~~---~g~~~l---~~l~~~~~~-~~~v~-l~~---- 194 (434)
+.+.++.... .....+ .++|+|+++.+....+. |.++..+ +....+ ..+++.... ...++ +..
T Consensus 239 k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~ 318 (462)
T 2ece_A 239 KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKA 318 (462)
T ss_dssp EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTE
T ss_pred cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccccccc
Confidence 5565555431 122233 45999999877654111 1111111 000000 011111100 00000 000
Q ss_pred -CCCeEEEEECcCCCEEEEEEccCCCeEEEEecc----ceeEEEcCCc----------------CeeEEEECCCCCeEEE
Q 013884 195 -EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK----CRPILELGSG----------------PYNTVRWNPKGKFLCL 253 (434)
Q Consensus 195 -~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~----~~~~~~~~~~----------------~~~~i~~sP~g~~l~~ 253 (434)
.....++.+||||+++.+ +....+.|.+||+. ...+..+..+ .-..+.+||||++|++
T Consensus 319 ~~~~pa~I~lS~DGrfLYV-Snrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyV 397 (462)
T 2ece_A 319 VPPLVTDIDISLDDKFLYL-SLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYV 397 (462)
T ss_dssp ECCCCCCEEECTTSCEEEE-EETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEE
T ss_pred CCCceeEEEECCCCCEEEE-EeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEE
Confidence 245678999999998887 46667899999974 2333333222 1367999999999998
Q ss_pred Ee
Q 013884 254 AG 255 (434)
Q Consensus 254 ~~ 255 (434)
+.
T Consensus 398 aN 399 (462)
T 2ece_A 398 TN 399 (462)
T ss_dssp EC
T ss_pred Ec
Confidence 86
No 223
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.78 E-value=2.7e-05 Score=71.37 Aligned_cols=231 Identities=11% Similarity=-0.021 Sum_probs=135.5
Q ss_pred CeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC
Q 013884 53 PSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL 129 (434)
Q Consensus 53 ~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~ 129 (434)
.++.+.+||++.+.. .++.|.+|+.. .. .....+. ...+..+.+.+++.-.++ . ...+.|..++...
T Consensus 23 ~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~-~~~~~~~~~~~~~~~i~~~~~g~l~v~----~--~~~~~v~~~d~~g-- 92 (300)
T 2qc5_A 23 YGITSSEDGKVWFTQHKANKISSLDQS-GR-IKEFEVPTPDAKVMCLIVSSLGDIWFT----E--NGANKIGKLSKKG-- 92 (300)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-SC-EEEEECSSTTCCEEEEEECTTSCEEEE----E--TTTTEEEEECTTS--
T ss_pred ceeeECCCCCEEEEcCCCCeEEEECCC-Cc-eEEEECCCCCCcceeEEECCCCCEEEE----e--cCCCeEEEECCCC--
Confidence 378899999987776 46799999976 22 1211121 245778888877432222 1 1124566666432
Q ss_pred CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCC
Q 013884 130 QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGS 208 (434)
Q Consensus 130 ~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~ 208 (434)
................+.+.++|... +. .. +...|+.++..+. ...+.+. ....++.+++.++|+
T Consensus 93 -~~~~~~~~~~~~~~~~i~~~~~g~l~-v~-~~----------~~~~i~~~~~~g~-~~~~~~~~~~~~~~~i~~d~~g~ 158 (300)
T 2qc5_A 93 -GFTEYPLPQPDSGPYGITEGLNGDIW-FT-QL----------NGDRIGKLTADGT-IYEYDLPNKGSYPAFITLGSDNA 158 (300)
T ss_dssp -CEEEEECSSTTCCEEEEEECSTTCEE-EE-ET----------TTTEEEEECTTSC-EEEEECSSTTCCEEEEEECTTSS
T ss_pred -CeEEecCCCCCCCCccceECCCCCEE-EE-cc----------CCCeEEEECCCCC-EEEccCCCCCCCceeEEECCCCC
Confidence 11111111112345677888888743 22 11 1113555655433 2223333 245688999999998
Q ss_pred EEEEEEccCCCeEEEEeccceeEE-Ec--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE-ee--CCCc
Q 013884 209 EFAVVYGFMPASATIFNKKCRPIL-EL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT-TR--AECS 282 (434)
Q Consensus 209 ~~av~~g~~~~~i~l~d~~~~~~~-~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~-~~--~~~~ 282 (434)
.++ +....+.+..||..+.... .. +......+++.++|++.++.. ..+.|.+||. +++.... .. ...+
T Consensus 159 l~v--~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~---~~~~i~~~~~-~g~~~~~~~~~~~~~~ 232 (300)
T 2qc5_A 159 LWF--TENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEI---MGNKIGRITT-TGEISEYDIPTPNARP 232 (300)
T ss_dssp EEE--EETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEET---TTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred EEE--EecCCCeEEEECCCCcEEEeeCCCCCCCcceEEECCCCCEEEEcc---CCCEEEEEcC-CCcEEEEECCCCCCCc
Confidence 444 3444678999998544332 12 234567899999997665443 2358999998 4443332 22 2255
Q ss_pred eEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCcee
Q 013884 283 VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF 319 (434)
Q Consensus 283 ~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~ 319 (434)
..++++++|+.+++... ++.|.+|+.+|+..
T Consensus 233 ~~i~~d~~g~l~v~~~~------~~~i~~~~~~g~~~ 263 (300)
T 2qc5_A 233 HAITAGKNSEIWFTEWG------ANQIGRITNDNTIQ 263 (300)
T ss_dssp EEEEECSTTCEEEEETT------TTEEEEECTTSCEE
T ss_pred eEEEECCCCCEEEeccC------CCeEEEECCCCcEE
Confidence 67999999996555544 78999999877644
No 224
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.76 E-value=7.5e-06 Score=86.18 Aligned_cols=200 Identities=11% Similarity=-0.022 Sum_probs=109.9
Q ss_pred Ceeeec-CCCcEEEEecC--C----eEEEEeCCCC-CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEE
Q 013884 53 PSIRFS-SDEAVACRMAT--N----EIQFFDTTDF-PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYA 124 (434)
Q Consensus 53 ~~~~~S-~d~~~la~~~~--~----~i~v~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~ 124 (434)
..++|| |||++||...+ + +|+++|+... ... ...+.. ...++.|||++ ..|++...+..+.+..|.+++
T Consensus 177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l-~~~~~~-~~~~~~WspDg-~~l~y~~~d~~~~~~~v~~~~ 253 (751)
T 2xe4_A 177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI-ADKVSG-TNGEIVWGPDH-TSLFYVTKDETLRENKVWRHV 253 (751)
T ss_dssp EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC-CCCEEE-ECSCCEECSST-TEEEEEEECTTCCEEEEEEEE
T ss_pred eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC-CccccC-ceeeEEEecCC-CEEEEEEECCCCCCCEEEEEE
Confidence 368999 99999998732 1 5999998875 421 111111 13568999994 555444333334445777788
Q ss_pred cCCCCCCCc--eeeee-ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceee--eec-C-CCCC
Q 013884 125 CGKDLQSQP--LARRS-FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL--VPL-R-KEGP 197 (434)
Q Consensus 125 ~~~~~~~~~--i~~~~-~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~--v~l-~-~~~~ 197 (434)
+.+ .+. ..... ....-...+.|+|||++|++..... +...||++++.+..... ..+ . ..++
T Consensus 254 lgt---~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~---------~~~~l~~~d~~~~~~~~~~~~l~~~~~~~ 321 (751)
T 2xe4_A 254 MGK---LQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSP---------ETAEVHLLDLRKGNAHNTLEIVRPREKGV 321 (751)
T ss_dssp TTS---CGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECS---------SCEEEEEEESSSCTTCCCEEESSCCCTTC
T ss_pred CCC---CchhcEEEEecCCCceEEEEEECCCCCEEEEEecCC---------CCceEEEEECCCCCCCceeEEeecCCCCc
Confidence 755 221 11111 1112245788999999988865321 23468888876542111 222 2 2345
Q ss_pred eEEEEECcCCCEEEEEEccC---CCeEEEEeccc-eeEEE--c-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc
Q 013884 198 VHDVQWSYSGSEFAVVYGFM---PASATIFNKKC-RPILE--L-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 268 (434)
Q Consensus 198 i~~~~wspdg~~~av~~g~~---~~~i~l~d~~~-~~~~~--~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~ 268 (434)
..++.|+ +|+.|++.+... ...|..+|+.. ..... + +...+.--.|+++++.|++....+....|.++|+
T Consensus 322 ~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 322 RYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp CEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred eEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence 5555554 378888766542 23777778753 22111 2 2222222234455676666554332346777785
No 225
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.75 E-value=2.8e-05 Score=70.60 Aligned_cols=248 Identities=8% Similarity=-0.036 Sum_probs=142.8
Q ss_pred CcEEEEecCCeEEEEeCCCCCCc-----eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee
Q 013884 61 EAVACRMATNEIQFFDTTDFPKG-----ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA 135 (434)
Q Consensus 61 ~~~la~~~~~~i~v~~~~~~~~~-----~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~ 135 (434)
|.+|..+..+.|+.+++...... ............++|+|+++ .+ +|... ..+.|..+++.. .....
T Consensus 1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~-~l-y~~d~---~~~~I~~~~~~g---~~~~~ 72 (267)
T 1npe_A 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDK-VV-YWTDI---SEPSIGRASLHG---GEPTT 72 (267)
T ss_dssp CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTT-EE-EEEET---TTTEEEEEESSS---CCCEE
T ss_pred CcEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCC-EE-EEEEC---CCCEEEEEecCC---CCcEE
Confidence 34566665568888887653211 11111223567889998633 22 22221 235778888754 22211
Q ss_pred eeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEc
Q 013884 136 RRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYG 215 (434)
Q Consensus 136 ~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g 215 (434)
...........+.+.+++..|.+.- . +...++.++..+.....+..........++++|++..+.+...
T Consensus 73 ~~~~~~~~p~~ia~d~~~~~lyv~d-~----------~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~ 141 (267)
T 1npe_A 73 IIRQDLGSPEGIALDHLGRTIFWTD-S----------QLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDW 141 (267)
T ss_dssp EECTTCCCEEEEEEETTTTEEEEEE-T----------TTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEEC
T ss_pred EEECCCCCccEEEEEecCCeEEEEE-C----------CCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEEC
Confidence 1111113456788888877766531 1 1123556665554322221111245689999998777665432
Q ss_pred cC-CCeEEEEeccceeEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC-CCceEEEECCC
Q 013884 216 FM-PASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPD 290 (434)
Q Consensus 216 ~~-~~~i~l~d~~~~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~-~~~~~~~wspd 290 (434)
.. .+.|..++.++.....+ ....-+.++++|+++.|.++..++ +.|.++|............ ..+..++ +|
T Consensus 142 ~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~--~~I~~~~~~g~~~~~~~~~~~~P~gi~--~d 217 (267)
T 1npe_A 142 NRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGT--HRAECLNPAQPGRRKVLEGLQYPFAVT--SY 217 (267)
T ss_dssp CSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTEEEEEEEEECCCSEEEEE--EE
T ss_pred CCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCC--CEEEEEecCCCceEEEecCCCCceEEE--Ee
Confidence 21 45888888875443332 234467899999999888887654 7999999876543333332 2333454 45
Q ss_pred CCEEEEEEcCCceeeCCcEEEEeec-Cceeeeeecc---cceeeEEEcCC
Q 013884 291 GRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKKMFD---KLFQAEWKPVS 336 (434)
Q Consensus 291 g~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~~~~~---~~~~~~w~p~~ 336 (434)
+.+|..+... .+.|.+++.. |+.+...... ..+.+.+.|+.
T Consensus 218 ~~~lyva~~~-----~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 218 GKNLYYTDWK-----TNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp TTEEEEEETT-----TTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred CCEEEEEECC-----CCeEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence 6777777653 6789999985 6766665443 35777777664
No 226
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.75 E-value=3.7e-06 Score=88.56 Aligned_cols=249 Identities=9% Similarity=-0.039 Sum_probs=132.1
Q ss_pred ceEEec-CCCcEEEEEecCCCCCCCcEEEEEcCCC-cEEEE-EeecCcCCCCCCeeeecCCCcEEEEec-C-----CeEE
Q 013884 3 LLLTCL-RVGLIIQTFQKSSTPQEKNVILWKTETG-EAVYQ-LFQKNMTKTTWPSIRFSSDEAVACRMA-T-----NEIQ 73 (434)
Q Consensus 3 ~~l~fS-P~g~~L~t~~~~~~~~d~~v~iWd~~~g-~~~~~-~~~~~~~~~~~~~~~~S~d~~~la~~~-~-----~~i~ 73 (434)
...+|| |||++|+......+.....|+|+|+.+| +.+.. +.. ....+.|||||+.|++.. + ..|.
T Consensus 177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~------~~~~~~WspDg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG------TNGEIVWGPDHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE------ECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC------ceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence 467899 9999999776444444457999999998 63211 111 123679999998887763 2 2677
Q ss_pred EEeCCCCCCceeeee--ec-CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCc-eeeeee-cccceeEEE
Q 013884 74 FFDTTDFPKGILYRL--RV-PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQP-LARRSF-FRCSTVQLN 148 (434)
Q Consensus 74 v~~~~~~~~~~~~~~--~~-~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~-i~~~~~-~~~~~~~~~ 148 (434)
++++........... .. .....+.|||+ +..|++.... .....|.++++.... ... +..+.. .......+.
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpD-g~~l~~~~~~--~~~~~l~~~d~~~~~-~~~~~~~l~~~~~~~~~s~~ 326 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAAD-TNTLCIGSQS--PETAEVHLLDLRKGN-AHNTLEIVRPREKGVRYDVQ 326 (751)
T ss_dssp EEETTSCGGGCEEEEECCCTTCEEEEEECTT-SSEEEEEEEC--SSCEEEEEEESSSCT-TCCCEEESSCCCTTCCEEEE
T ss_pred EEECCCCchhcEEEEecCCCceEEEEEECCC-CCEEEEEecC--CCCceEEEEECCCCC-CCceeEEeecCCCCceEEEe
Confidence 777765322111111 11 23567899999 5566554432 234577888876521 111 022211 112222333
Q ss_pred ECCCCCeEEEEEEecccccCceeecceeEEEEeeCC-Cc-ee-eeecCCCCCeEEEEECcCCCEEEEEEccCCC--eEEE
Q 013884 149 WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG-TH-EG-LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--SATI 223 (434)
Q Consensus 149 ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~-~~-~~-~v~l~~~~~i~~~~wspdg~~~av~~g~~~~--~i~l 223 (434)
|+ .|+.|++++..+ +. +...|+.++... .. .. .++-.....+.++.| +++.+++. ...++ .+.+
T Consensus 327 ~~-~g~~l~~~t~~~----~a---~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~-~~~~g~~~l~~ 395 (751)
T 2xe4_A 327 MH-GTSHLVILTNEG----GA---VNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVA-GRRAGLTRIWT 395 (751)
T ss_dssp EE-TTTEEEEEECTT----TC---TTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEE-EEETTEEEEEE
T ss_pred ee-eCCEEEEEeCCC----CC---CCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEE-EEeCCEEEEEE
Confidence 32 378877764332 00 223577777653 11 12 222211123445555 46677664 34455 5666
Q ss_pred Eec-------ccee-EEEc--CC-cCeeEEEE----CCCCCeE-EEEecCCCCCeEEEEEccCCE
Q 013884 224 FNK-------KCRP-ILEL--GS-GPYNTVRW----NPKGKFL-CLAGFGNLPGDMAFWDYVDGK 272 (434)
Q Consensus 224 ~d~-------~~~~-~~~~--~~-~~~~~i~~----sP~g~~l-~~~~~~~~~g~i~iwd~~~~~ 272 (434)
+|+ .+.. ...+ .. ..+..+.+ ++++..+ ++.+.-...+.++.+|+.+++
T Consensus 396 ~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 396 MMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp EECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred EecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 775 3333 3443 22 22233333 4577644 433333345788999988764
No 227
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.74 E-value=1.6e-05 Score=73.83 Aligned_cols=226 Identities=11% Similarity=0.028 Sum_probs=127.2
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCC
Q 013884 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFP 81 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~ 81 (434)
....|+|+|++|+.... .++.|..|+. +|+ +..+.... .....+.|++||+++++.. ++.|.+|+.. ..
T Consensus 48 egp~~~~~g~~l~~~d~----~~~~i~~~~~-~g~-~~~~~~~~---~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~ 117 (305)
T 3dr2_A 48 EGPAWWEAQRTLVWSDL----VGRRVLGWRE-DGT-VDVLLDAT---AFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ 117 (305)
T ss_dssp EEEEEEGGGTEEEEEET----TTTEEEEEET-TSC-EEEEEESC---SCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred cCCeEeCCCCEEEEEEC----CCCEEEEEeC-CCC-EEEEeCCC---CccceeeECCCCCEEEEECCCCEEEEECCC-CC
Confidence 46789999997665542 4578999997 565 34444332 3344789999999887764 4689999875 22
Q ss_pred Cceeeee-----ecCCeeEEEEeCCCCCeEEEEec--CC-----------CCCCceEEEEEcCCCCCCCceeeeeecccc
Q 013884 82 KGILYRL-----RVPGVAAFEVSKAPGSHVAVFVP--ES-----------KGSPASVQIYACGKDLQSQPLARRSFFRCS 143 (434)
Q Consensus 82 ~~~~~~~-----~~~~v~~~~~sp~~~~~ia~~~~--~~-----------~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~ 143 (434)
. ..... ....+.++.++|++. +.. -.+ .. ....+.|..++... ++ +.... ....
T Consensus 118 ~-~~~~~~~~~~~~~~~~~i~~d~dG~-l~~-td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~---g~-~~~~~-~~~~ 189 (305)
T 3dr2_A 118 A-HLLVGRYAGKRLNSPNDLIVARDGA-IWF-TDPPFGLRKPSQGCPADPELAHHSVYRLPPDG---SP-LQRMA-DLDH 189 (305)
T ss_dssp E-EEEECEETTEECSCCCCEEECTTSC-EEE-ECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS---CC-CEEEE-EESS
T ss_pred E-EEEEeccCCCccCCCCCEEECCCCC-EEE-eCcCCCccccccccccccccCCCeEEEEcCCC---Cc-EEEEe-cCCC
Confidence 1 11111 122356788998853 221 111 00 00113444444333 22 22222 2233
Q ss_pred eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCc--eeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCe
Q 013884 144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH--EGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPAS 220 (434)
Q Consensus 144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~ 220 (434)
...+.|+|+|+.|++.... ... .+...|+.++..+.. ...+... ..+....++++++|+.++ +. ...
T Consensus 190 p~gl~~spdg~~lyv~~~~-~~~-----~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv---~~-~~g 259 (305)
T 3dr2_A 190 PNGLAFSPDEQTLYVSQTP-EQG-----HGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS---SS-GTG 259 (305)
T ss_dssp EEEEEECTTSSEEEEEECC-C--------CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE---CC-SSE
T ss_pred CcceEEcCCCCEEEEEecC-CcC-----CCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE---ec-CCc
Confidence 4578999999987664221 100 011234555443321 1111111 134456789999998444 33 346
Q ss_pred EEEEeccceeEEEcC-CcCeeEEEECCCCCeEEEEec
Q 013884 221 ATIFNKKCRPILELG-SGPYNTVRWNPKGKFLCLAGF 256 (434)
Q Consensus 221 i~l~d~~~~~~~~~~-~~~~~~i~~sP~g~~l~~~~~ 256 (434)
|.+||.++..+..+. ...+..++|+|+++.|.+++.
T Consensus 260 v~~~~~~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 260 VCVFDSDGQLLGHIPTPGTASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp EEEECTTSCEEEEEECSSCCCEEEECTTSCEEEEEET
T ss_pred EEEECCCCCEEEEEECCCceeEEEEeCCCCEEEEEcC
Confidence 999999877666552 235788999999998888763
No 228
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.71 E-value=3.2e-07 Score=88.20 Aligned_cols=126 Identities=9% Similarity=-0.054 Sum_probs=92.0
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc---eeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013884 195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC---RPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 271 (434)
Q Consensus 195 ~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~---~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~ 271 (434)
.+ |+.++| |++.+++. .++.|.+||++. ......+..+++++.+.+.. ++++. .+|.|.+||++++
T Consensus 88 p~-V~~l~f--d~~~L~v~---~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~---~dG~L~v~dl~~~ 156 (388)
T 1xip_A 88 PD-VIFVCF--HGDQVLVS---TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILN---SVNDLSALDLRTK 156 (388)
T ss_dssp TT-EEEEEE--ETTEEEEE---ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEE---TTSEEEEEETTTC
T ss_pred CC-eeEEEE--CCCEEEEE---cCCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEE---CCCCEEEEEccCC
Confidence 45 999999 99999974 568999999852 12222345668888877653 66666 5689999999987
Q ss_pred EEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceee---ee-----------ecccceeeEEEcCCC
Q 013884 272 KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF---KK-----------MFDKLFQAEWKPVSP 337 (434)
Q Consensus 272 ~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~---~~-----------~~~~~~~~~w~p~~~ 337 (434)
..... ...+++++|||+| ++.+.. ||.+++|+..+..+. .. +...+..+.|-+...
T Consensus 157 ~~~~~--~~~Vs~v~WSpkG--~~vg~~------dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~ 226 (388)
T 1xip_A 157 STKQL--AQNVTSFDVTNSQ--LAVLLK------DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQD 226 (388)
T ss_dssp CEEEE--EESEEEEEECSSE--EEEEET------TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSE
T ss_pred ccccc--cCCceEEEEcCCc--eEEEEc------CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCe
Confidence 65542 3478889999999 677777 999999999887752 12 123477888988765
Q ss_pred CCCC
Q 013884 338 DKFG 341 (434)
Q Consensus 338 ~~~~ 341 (434)
.++.
T Consensus 227 flv~ 230 (388)
T 1xip_A 227 FLAV 230 (388)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
No 229
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.67 E-value=1e-06 Score=84.73 Aligned_cols=215 Identities=14% Similarity=0.071 Sum_probs=135.6
Q ss_pred CCCeeeecCCCcEEEEecCCeEEEEeCCCCC---------CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEE
Q 013884 51 TWPSIRFSSDEAVACRMATNEIQFFDTTDFP---------KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQ 121 (434)
Q Consensus 51 ~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~---------~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~ 121 (434)
.+..+++++...+++.++.+.+.+|++.+.. ........++.|..++| + +..+++- ..+.|.
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~V~~l~f--d-~~~L~v~------~~~~l~ 109 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCF--H-GDQVLVS------TRNALY 109 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEE--E-TTEEEEE------ESSEEE
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCCeeEEEE--C-CCEEEEE------cCCcEE
Confidence 4568999999999999988899999965422 11123344556999999 4 5555543 236899
Q ss_pred EEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEE
Q 013884 122 IYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDV 201 (434)
Q Consensus 122 i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~ 201 (434)
+|++.+. ........+...+..+.|.+.. ++++. .| | .|+.+++...... .+ ...|.++
T Consensus 110 v~dv~sl---~~~~~~~~~~~~v~~i~~~~p~--~av~~---~d-------G--~L~v~dl~~~~~~--~~--~~~Vs~v 168 (388)
T 1xip_A 110 SLDLEEL---SEFRTVTSFEKPVFQLKNVNNT--LVILN---SV-------N--DLSALDLRTKSTK--QL--AQNVTSF 168 (388)
T ss_dssp EEESSST---TCEEEEEECSSCEEEEEECSSE--EEEEE---TT-------S--EEEEEETTTCCEE--EE--EESEEEE
T ss_pred EEEchhh---hccCccceeecceeeEEecCCC--EEEEE---CC-------C--CEEEEEccCCccc--cc--cCCceEE
Confidence 9999884 3333444556667777777652 44332 11 1 3556655443222 22 3579999
Q ss_pred EECcCCCEEEEEEccCCCeEEEEecccee---EEEc-----------CCcCeeEEEECCCCCeEEEEecCC--C------
Q 013884 202 QWSYSGSEFAVVYGFMPASATIFNKKCRP---ILEL-----------GSGPYNTVRWNPKGKFLCLAGFGN--L------ 259 (434)
Q Consensus 202 ~wspdg~~~av~~g~~~~~i~l~d~~~~~---~~~~-----------~~~~~~~i~~sP~g~~l~~~~~~~--~------ 259 (434)
+|||+| ++ .|..++++.+|+..+.. ..++ +...+.+|.|.+++.++++-+... .
T Consensus 169 ~WSpkG--~~--vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~~~~~~~~~~~~ 244 (388)
T 1xip_A 169 DVTNSQ--LA--VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNVISETDDEVSY 244 (388)
T ss_dssp EECSSE--EE--EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECCCCSSCSSCCC
T ss_pred EEcCCc--eE--EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcCCCCCcCcccCC
Confidence 999999 44 36678999999887655 2333 467789999999999998754322 1
Q ss_pred CCeEEEEEccCCEE-EEEeeC-----------C--CceE-EEECCCCCEEEEEEc
Q 013884 260 PGDMAFWDYVDGKQ-LGTTRA-----------E--CSVT-SEWSPDGRYFMTATT 299 (434)
Q Consensus 260 ~g~i~iwd~~~~~~-i~~~~~-----------~--~~~~-~~wspdg~~l~tas~ 299 (434)
+..++|.....+.. ...+.. + .... -.|.|+.+.|+..++
T Consensus 245 ~~~~~ii~~~~~~~~f~~~~d~~~~fg~~~R~~~~~~~~l~~w~~~~~~l~iv~S 299 (388)
T 1xip_A 245 DQKMYIIKHIDGSASFQETFDITPPFGQIVRFPYMYKVTLSGLIEPDANVNVLAS 299 (388)
T ss_dssp CEEEEEEEEETTEEEEEEESSSCCCCCCSCCCCCEEEEEEEEEEETTEEEEEEEE
T ss_pred cceEEEEEcCCCCceeEccccCcCCcCCccCCceeeeeehhcccccCCcEEEEeC
Confidence 22577777444432 122211 1 1111 589888877666554
No 230
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.67 E-value=8.3e-06 Score=79.41 Aligned_cols=197 Identities=8% Similarity=0.015 Sum_probs=115.6
Q ss_pred cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCc
Q 013884 90 VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQ 169 (434)
Q Consensus 90 ~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~ 169 (434)
+.....++|+|++. +|+.+. ....|++|+... +........ ..... +.|+++|+.|++.. .+
T Consensus 130 ~~~P~~la~d~~g~----lyv~d~--~~~~I~~id~~~---g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d---~~---- 191 (409)
T 3hrp_A 130 FKYMWGIAAVGNNT----VLAYQR--DDPRVRLISVDD---NKVTTVHPG-FKGGK-PAVTKDKQRVYSIG---WE---- 191 (409)
T ss_dssp CCCEEEEEECSTTE----EEEEET--TTTEEEEEETTT---TEEEEEEET-CCBCB-CEECTTSSEEEEEB---SS----
T ss_pred cCCceEEEEeCCCC----EEEEec--CCCcEEEEECCC---CEEEEeecc-CCCCc-eeEecCCCcEEEEe---cC----
Confidence 34567888888742 222221 245889998865 332222222 22233 89999999765531 11
Q ss_pred eeecceeEEEEeeCCCcee-ee-e--cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc------CC-c-
Q 013884 170 SYYGESKLNYLTTDGTHEG-LV-P--LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL------GS-G- 237 (434)
Q Consensus 170 ~~~g~~~l~~l~~~~~~~~-~v-~--l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~------~~-~- 237 (434)
+...++.++..+.... .+ . ......+++++++|++..|.+ ...++.|..||........+ +. .
T Consensus 192 ---~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv--~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 192 ---GTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYF--VDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp ---TTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEE--ECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ---CCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEE--EECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 1113566665443321 11 0 112456789999996666665 33467899999865433322 11 1
Q ss_pred -CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC----------------CCceEEEECCCCCEEEEEE-c
Q 013884 238 -PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA----------------ECSVTSEWSPDGRYFMTAT-T 299 (434)
Q Consensus 238 -~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~----------------~~~~~~~wspdg~~l~tas-~ 299 (434)
|.+.++|+|++..|.++... .+.|+.||.+.... ..... ..+..++++|+|+.+++-+ .
T Consensus 267 ~P~~~ia~~p~~g~lyv~d~~--~~~I~~~~~~g~~~-~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~ 343 (409)
T 3hrp_A 267 NPGPYLIYYFVDSNFYMSDQN--LSSVYKITPDGECE-WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK 343 (409)
T ss_dssp SSCCEEEEETTTTEEEEEETT--TTEEEEECTTCCEE-EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT
T ss_pred CccccEEEeCCCCEEEEEeCC--CCEEEEEecCCCEE-EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC
Confidence 22489999976666666543 36899999765421 11111 1355699999999666655 5
Q ss_pred CCceeeCCcEEEEe-ecCce
Q 013884 300 APRLQIDNGIKIFH-HNGSL 318 (434)
Q Consensus 300 ~~rl~~D~~i~iw~-~~g~~ 318 (434)
++.|++|+ -+|.+
T Consensus 344 ------~~~I~~~~~~~G~v 357 (409)
T 3hrp_A 344 ------GYCLRKLDILDGYV 357 (409)
T ss_dssp ------TCEEEEEETTTTEE
T ss_pred ------CCEEEEEECCCCEE
Confidence 88999999 45654
No 231
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.55 E-value=3.1e-06 Score=84.78 Aligned_cols=268 Identities=6% Similarity=-0.008 Sum_probs=159.6
Q ss_pred CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcC------------------------------------CCCCCe
Q 013884 11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMT------------------------------------KTTWPS 54 (434)
Q Consensus 11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~------------------------------------~~~~~~ 54 (434)
..|...|| +...+.|+|+-+.+++++..+.--+.. -..-+.
T Consensus 13 d~~~~f~s---~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh 89 (595)
T 1fwx_A 13 DDYYGFWS---SGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHH 89 (595)
T ss_dssp CSEEEEEC---CBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCC
T ss_pred ccEEEEee---CCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCc
Confidence 35677776 446789999999999988776522110 011123
Q ss_pred eeecC-----CCcEEEEec--CCeEEEEeCCCCCCceeeeee-cCCeeEEEE-e-CCCCCeEEEE---e--cCC------
Q 013884 55 IRFSS-----DEAVACRMA--TNEIQFFDTTDFPKGILYRLR-VPGVAAFEV-S-KAPGSHVAVF---V--PES------ 113 (434)
Q Consensus 55 ~~~S~-----d~~~la~~~--~~~i~v~~~~~~~~~~~~~~~-~~~v~~~~~-s-p~~~~~ia~~---~--~~~------ 113 (434)
+..|. ||++|.... ++.|.+.|+..+.......+. ..+...+.+ + |+++..++.- . +..
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~ 169 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED 169 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccc
Confidence 44555 888887763 458999999987643333443 245778887 5 7744433221 1 100
Q ss_pred -CCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceee-----cceeEEEEeeCCCce
Q 013884 114 -KGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYY-----GESKLNYLTTDGTHE 187 (434)
Q Consensus 114 -~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~-----g~~~l~~l~~~~~~~ 187 (434)
....+.+.+.+..+ .+.+.+..... .--.+..+|+|+++.+...... .+.... -...+..++....
T Consensus 170 ~~~~~~~vtvID~~t---~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se--~~~~i~~~~~~~~d~v~V~~~~~~-- 241 (595)
T 1fwx_A 170 VANYVNVFTAVDADK---WEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSE--KGMTLPEMTAAEMDHIVVFNIAEI-- 241 (595)
T ss_dssp GGGEEEEEEEEETTT---TEEEEEEEESS-CCCCEEECSSSSEEEEEESCTT--CCSSHHHHTCCSEEEEEEEEHHHH--
T ss_pred ccccCceEEEEECCC---CeEEEEEEeCC-CccceEECCCCCEEEEEecCcc--cCcchhhccccccceEEEeeccce--
Confidence 12235788888877 66666665433 3345678999998766432110 000000 0001111111110
Q ss_pred eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc---ee-EEEcC-CcCeeEEEECCCCCeEEEEecCCCCCe
Q 013884 188 GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC---RP-ILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGD 262 (434)
Q Consensus 188 ~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~---~~-~~~~~-~~~~~~i~~sP~g~~l~~~~~~~~~g~ 262 (434)
.++.++|+...+ +.+.+.|.+. .. +..+. ...-..+.+||||+++++++.+. .+
T Consensus 242 -------------~~~v~~Gk~~~i------~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s--~~ 300 (595)
T 1fwx_A 242 -------------EKAIAAGDYQEL------NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLS--PT 300 (595)
T ss_dssp -------------HHHHHHTCSEEE------TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTS--SB
T ss_pred -------------eEeccCCCeeEE------CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCC--Ce
Confidence 013356665443 3589999875 23 33332 22446799999999999987643 79
Q ss_pred EEEEEccCCE------------EEEEee-CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884 263 MAFWDYVDGK------------QLGTTR-AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 263 i~iwd~~~~~------------~i~~~~-~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
|.++|+.+.+ .+.... +.....++|+||| ++.++..- |+.|.+|++..
T Consensus 301 VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~l-----dsqV~kwdi~~ 361 (595)
T 1fwx_A 301 VTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFL-----DSQVVKWNIED 361 (595)
T ss_dssp EEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETT-----TTEEEEEEHHH
T ss_pred EEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEec-----CCcEEEEEhhH
Confidence 9999998653 344443 3478889999999 66555542 99999999965
No 232
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.18 E-value=0.00083 Score=69.66 Aligned_cols=58 Identities=17% Similarity=0.276 Sum_probs=45.8
Q ss_pred CeEEEEEccCCEEEEEeeCCC-ceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec
Q 013884 261 GDMAFWDYVDGKQLGTTRAEC-SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF 324 (434)
Q Consensus 261 g~i~iwd~~~~~~i~~~~~~~-~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~~~ 324 (434)
|.|..||+.+++.+..+.... .....++.+|..+++++. |+.+++||. +|+++.....
T Consensus 457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~------dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTA------DGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT------TSEEEEEETTTCCEEEEEEC
T ss_pred cEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECC------CCcEEEEECCCCceeeeeeC
Confidence 789999999999888876542 233456778888888877 999999997 6888877644
No 233
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.13 E-value=0.00093 Score=62.99 Aligned_cols=180 Identities=8% Similarity=-0.005 Sum_probs=105.4
Q ss_pred cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCc-eeeeecCC-----CCCeEEEEECcCCCEEEEEEc
Q 013884 142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRK-----EGPVHDVQWSYSGSEFAVVYG 215 (434)
Q Consensus 142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~-----~~~i~~~~wspdg~~~av~~g 215 (434)
.....+.++++|+ |.++ +..... .+...|+.++...+. ...+.+.. ...+++++++|++..+.+ +.
T Consensus 67 ~~p~gv~~d~~g~-L~v~-D~g~~~-----~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yv-td 138 (343)
T 2qe8_A 67 DTVLGIKSDGNGI-VWML-DNGNQS-----KSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYI-SD 138 (343)
T ss_dssp SCEEEEEECSSSE-EEEE-ECHHHH-----TSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEE-EE
T ss_pred eEeeEEEEcCCCc-EEEE-cCCCCc-----CCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEE-Ec
Confidence 3566888999876 4332 211000 012246666654332 33334321 235689999987665544 44
Q ss_pred c---CCCeEEEEecccee-EEEcCC-------------------------------cCeeEEEECCCCCeEEEEecCCCC
Q 013884 216 F---MPASATIFNKKCRP-ILELGS-------------------------------GPYNTVRWNPKGKFLCLAGFGNLP 260 (434)
Q Consensus 216 ~---~~~~i~l~d~~~~~-~~~~~~-------------------------------~~~~~i~~sP~g~~l~~~~~~~~~ 260 (434)
. ..+.|.+||..... ...++. ...+.|+|||||+.|+++....
T Consensus 139 ~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~-- 216 (343)
T 2qe8_A 139 PAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHS-- 216 (343)
T ss_dssp CCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSC--
T ss_pred CccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCC--
Confidence 4 56799999986332 222211 1257899999999888886432
Q ss_pred CeEEEEEcc---CCE--------EEEEe-eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeee---c
Q 013884 261 GDMAFWDYV---DGK--------QLGTT-RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKM---F 324 (434)
Q Consensus 261 g~i~iwd~~---~~~--------~i~~~-~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~~---~ 324 (434)
..|+.+|.. .+. .+... ....+..++++++|+.+++... ++.|.+|+. +|+...... .
T Consensus 217 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~------~~~V~~~d~~~G~~~~~~~~~~~ 290 (343)
T 2qe8_A 217 TSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLA------HSAIGVITSADRAYKLLVTDEKL 290 (343)
T ss_dssp SEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGG------GTEEEEEETTTTEEEEEEECGGG
T ss_pred CeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccC------CCeEEEEECCCCCEEEEEECCce
Confidence 367766642 110 01111 1123345899999998888777 899999999 887433322 2
Q ss_pred ccceeeEEEcCCC
Q 013884 325 DKLFQAEWKPVSP 337 (434)
Q Consensus 325 ~~~~~~~w~p~~~ 337 (434)
.....+++.|++.
T Consensus 291 ~~p~~va~~~~g~ 303 (343)
T 2qe8_A 291 SWTDSFNFGSDGY 303 (343)
T ss_dssp SCEEEEEECTTSC
T ss_pred ecCCeeEECCCCc
Confidence 3356778877654
No 234
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.11 E-value=0.00096 Score=60.37 Aligned_cols=194 Identities=7% Similarity=0.028 Sum_probs=112.5
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCC
Q 013884 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDF 80 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~ 80 (434)
..|.|+|||...++.+.+ .++.|.+.|+.+|+.+.++.... ... ...++.++..|..+ .++.+.++|..++
T Consensus 24 ~Gl~~~~dg~Lyvstg~~---~~s~v~~iD~~tg~v~~~i~l~~---~~f-geGi~~~g~~lyv~t~~~~~v~viD~~t~ 96 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLY---GRSSVRQVALQTGKVENIHKMDD---SYF-GEGLTLLNEKLYQVVWLKNIGFIYDRRTL 96 (266)
T ss_dssp EEEEECSTTEEEEEECST---TTCEEEEEETTTCCEEEEEECCT---TCC-EEEEEEETTEEEEEETTCSEEEEEETTTT
T ss_pred ccEEEeCCCeEEEECCCC---CCCEEEEEECCCCCEEEEEecCC---Ccc-eEEEEEeCCEEEEEEecCCEEEEEECCCC
Confidence 478999998655554321 35789999999999998876432 111 22334445555444 4689999999876
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc-----ceeEEEECCCCCe
Q 013884 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC-----STVQLNWNRGSTG 155 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~-----~~~~~~ws~~G~~ 155 (434)
.. ..++....-....+++++...+. .+ + .+.|.+++..+ .+.+........ ....+.|. +| .
T Consensus 97 ~v--~~~i~~g~~~g~glt~Dg~~l~v---s~--g-s~~l~viD~~t---~~v~~~I~Vg~~~~p~~~~nele~~-dg-~ 163 (266)
T 2iwa_A 97 SN--IKNFTHQMKDGWGLATDGKILYG---SD--G-TSILYEIDPHT---FKLIKKHNVKYNGHRVIRLNELEYI-NG-E 163 (266)
T ss_dssp EE--EEEEECCSSSCCEEEECSSSEEE---EC--S-SSEEEEECTTT---CCEEEEEECEETTEECCCEEEEEEE-TT-E
T ss_pred cE--EEEEECCCCCeEEEEECCCEEEE---EC--C-CCeEEEEECCC---CcEEEEEEECCCCcccccceeEEEE-CC-E
Confidence 53 23343331123446666444332 22 2 46888888877 455555443221 12355666 55 4
Q ss_pred EEEEEEecccccCceeecceeEEEEeeCCCc-eeeeecC------------CCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 013884 156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLR------------KEGPVHDVQWSYSGSEFAVVYGFMPASAT 222 (434)
Q Consensus 156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~------------~~~~i~~~~wspdg~~~av~~g~~~~~i~ 222 (434)
|.+. . +....+..++..... ...+.+. .....+.++|+|++++|.+ ++..-.++.
T Consensus 164 lyvn--~---------~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfV-Tgk~~~~v~ 231 (266)
T 2iwa_A 164 VWAN--I---------WQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFV-TGKLWPKLF 231 (266)
T ss_dssp EEEE--E---------TTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEE-EETTCSEEE
T ss_pred EEEe--c---------CCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEE-ECCCCCeEE
Confidence 3321 1 112245666654332 2333332 0135589999999998887 566566888
Q ss_pred EEeccc
Q 013884 223 IFNKKC 228 (434)
Q Consensus 223 l~d~~~ 228 (434)
..++..
T Consensus 232 ~i~l~~ 237 (266)
T 2iwa_A 232 EIKLHL 237 (266)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 777643
No 235
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.04 E-value=0.0039 Score=59.89 Aligned_cols=223 Identities=7% Similarity=-0.033 Sum_probs=117.3
Q ss_pred CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCC
Q 013884 25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAP 102 (434)
Q Consensus 25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 102 (434)
...|+..++..+......... .....+.|.+.+..|... ..+.|+.++...................+++.+.+
T Consensus 95 ~~~I~~i~~~~~~~~~~~~~~----~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~ 170 (386)
T 3v65_B 95 RIDIRQVLPHRSEYTLLLNNL----ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVH 170 (386)
T ss_dssp BSCEEEECTTSCCCEEEECSC----SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTT
T ss_pred CccceeeccCCCcEEEEecCC----CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCC
Confidence 356777787665432222211 223378999866655544 45699999987533211111122344567777653
Q ss_pred CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEee
Q 013884 103 GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT 182 (434)
Q Consensus 103 ~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~ 182 (434)
+. | +|.... ...|.++++.. ..........-.....+...|.+..|.+. . ... ...|+.++.
T Consensus 171 g~-l-Y~~d~~---~~~I~~~~~dg---~~~~~l~~~~l~~P~giavdp~~g~ly~t-d--~~~-------~~~I~r~~~ 232 (386)
T 3v65_B 171 DK-L-YWTDSG---TSRIEVANLDG---AHRKVLLWQSLEKPRAIALHPMEGTIYWT-D--WGN-------TPRIEASSM 232 (386)
T ss_dssp TE-E-EEEETT---TTEEEECBTTS---CSCEEEECSSCSCEEEEEEETTTTEEEEE-E--CSS-------SCEEEEEET
T ss_pred Ce-E-EEEcCC---CCeEEEEeCCC---CceEEeecCCCCCCcEEEEEcCCCeEEEe-c--cCC-------CCEEEEEeC
Confidence 32 2 232221 23566666543 11111111111234567778877766553 1 111 134777777
Q ss_pred CCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc---CCcCeeEEEECCCCCeEEEEecCCC
Q 013884 183 DGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNL 259 (434)
Q Consensus 183 ~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~ 259 (434)
.|.....+....-...+.++|+|++..|.++ ....+.|..+|+.+.....+ ....-..|++ ++..|..+..++
T Consensus 233 dG~~~~~~~~~~~~~PnGlavd~~~~~lY~a-D~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav--~~~~ly~td~~~- 308 (386)
T 3v65_B 233 DGSGRRIIADTHLFWPNGLTIDYAGRRMYWV-DAKHHVIERANLDGSHRKAVISQGLPHPFAITV--FEDSLYWTDWHT- 308 (386)
T ss_dssp TSCSCEEEECSSCSCEEEEEEEGGGTEEEEE-ETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE--ETTEEEEEETTT-
T ss_pred CCCCcEEEEECCCCCeeeEEEeCCCCEEEEE-ECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE--ECCEEEEeeCCC-
Confidence 7653333222222346899999988888874 45567999999876443332 2223345666 334555555443
Q ss_pred CCeEEEEEccCCEEE
Q 013884 260 PGDMAFWDYVDGKQL 274 (434)
Q Consensus 260 ~g~i~iwd~~~~~~i 274 (434)
+.|..+|..+++.+
T Consensus 309 -~~V~~~~~~~G~~~ 322 (386)
T 3v65_B 309 -KSINSANKFTGKNQ 322 (386)
T ss_dssp -TEEEEEETTTCCSC
T ss_pred -CeEEEEECCCCcce
Confidence 57777775555433
No 236
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.04 E-value=0.0035 Score=64.97 Aligned_cols=76 Identities=13% Similarity=0.260 Sum_probs=54.1
Q ss_pred CeEEEEecc-ceeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC---ceEEEECCCCCE
Q 013884 219 ASATIFNKK-CRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC---SVTSEWSPDGRY 293 (434)
Q Consensus 219 ~~i~l~d~~-~~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~---~~~~~wspdg~~ 293 (434)
+.+..||++ ++.+-++ +..+.....++.+|.++++++ .+|.+++||.++++.+..+.... ..-+.|++||+.
T Consensus 457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~---~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~ 533 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGT---ADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQ 533 (677)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC---TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred cEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEEC---CCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEE
Confidence 578889986 4444444 233455556777888888876 66899999999999999887542 223788899986
Q ss_pred EEEE
Q 013884 294 FMTA 297 (434)
Q Consensus 294 l~ta 297 (434)
++..
T Consensus 534 ~v~~ 537 (677)
T 1kb0_A 534 YVSV 537 (677)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6554
No 237
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.04 E-value=0.0095 Score=56.26 Aligned_cols=221 Identities=7% Similarity=-0.033 Sum_probs=116.9
Q ss_pred CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCC
Q 013884 25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAP 102 (434)
Q Consensus 25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 102 (434)
...|+..++............ .....++|.+.+..|... ..+.|+.++...................+++.+.+
T Consensus 52 ~~~I~~i~~~g~~~~~~~~~~----~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~ 127 (349)
T 3v64_C 52 RIDIRQVLPHRSEYTLLLNNL----ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVH 127 (349)
T ss_dssp BSCEEEECTTSCCEEEEECSC----SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTT
T ss_pred ccceEEEeCCCCeeEEeecCC----CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCC
Confidence 355777776654432222111 223378999866665554 45799999987643212111123345677777653
Q ss_pred CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEee
Q 013884 103 GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT 182 (434)
Q Consensus 103 ~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~ 182 (434)
+. + +|... ....|.+.++.. ..........-.....++..|.+..|.+. .. .. ...|+.++.
T Consensus 128 g~-l-y~~d~---~~~~I~~~~~dG---~~~~~l~~~~l~~P~~iavdp~~g~ly~t-d~--~~-------~~~I~r~~~ 189 (349)
T 3v64_C 128 DK-L-YWTDS---GTSRIEVANLDG---AHRKVLLWQSLEKPRAIALHPMEGTIYWT-DW--GN-------TPRIEASSM 189 (349)
T ss_dssp TE-E-EEEET---TTTEEEEEETTS---CSCEEEECTTCSCEEEEEEETTTTEEEEE-EC--SS-------SCEEEEEET
T ss_pred Ce-E-EEEcC---CCCeEEEEcCCC---CceEEEEeCCCCCcceEEEecCcCeEEEe-cc--CC-------CCEEEEEeC
Confidence 32 2 23322 224677777654 21111111111234567788877766553 11 11 134777777
Q ss_pred CCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc---CCcCeeEEEECCCCCeEEEEecCCC
Q 013884 183 DGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNL 259 (434)
Q Consensus 183 ~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~ 259 (434)
+|.....+....-...+.++|+|++..+.++ ....+.|..+|..+.....+ ....-..|++ ++..|..+..++
T Consensus 190 dG~~~~~~~~~~~~~PnGla~d~~~~~lY~a-D~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav--~~~~ly~td~~~- 265 (349)
T 3v64_C 190 DGSGRRIIADTHLFWPNGLTIDYAGRRMYWV-DAKHHVIERANLDGSHRKAVISQGLPHPFAITV--FEDSLYWTDWHT- 265 (349)
T ss_dssp TSCSCEESCCSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE--ETTEEEEEETTT-
T ss_pred CCCCcEEEEECCCCCcceEEEeCCCCEEEEE-ECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE--ECCEEEEecCCC-
Confidence 7653222211123346899999988888774 45567999999876443332 2223345555 234555555443
Q ss_pred CCeEEEEEccCCE
Q 013884 260 PGDMAFWDYVDGK 272 (434)
Q Consensus 260 ~g~i~iwd~~~~~ 272 (434)
+.|..+|..+++
T Consensus 266 -~~V~~~~~~~G~ 277 (349)
T 3v64_C 266 -KSINSANKFTGK 277 (349)
T ss_dssp -TEEEEEETTTCC
T ss_pred -CeEEEEEccCCC
Confidence 567766654443
No 238
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.01 E-value=0.012 Score=56.48 Aligned_cols=232 Identities=9% Similarity=-0.082 Sum_probs=128.1
Q ss_pred CcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec
Q 013884 61 EAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF 140 (434)
Q Consensus 61 ~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~ 140 (434)
..+|+....+.|+.+++..... ............++|.+.. ..| +|.... .+.|..+++.. ..........
T Consensus 87 ~~~l~~~~~~~I~~i~~~~~~~-~~~~~~~~~~~gl~~d~~~-~~l-y~~D~~---~~~I~r~~~~g---~~~~~~~~~~ 157 (386)
T 3v65_B 87 EPVLLFANRIDIRQVLPHRSEY-TLLLNNLENAIALDFHHRR-ELV-FWSDVT---LDRILRANLNG---SNVEEVVSTG 157 (386)
T ss_dssp CCEEEEECBSCEEEECTTSCCC-EEEECSCSCEEEEEEETTT-TEE-EEEETT---TTEEEEEETTS---CCEEEEECSS
T ss_pred cceeEeecCccceeeccCCCcE-EEEecCCCccEEEEEecCC-CeE-EEEeCC---CCcEEEEecCC---CCcEEEEeCC
Confidence 4455556667888888765332 1111224467788998763 333 333221 24666666654 2211111111
Q ss_pred ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCC-C
Q 013884 141 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP-A 219 (434)
Q Consensus 141 ~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~-~ 219 (434)
......+++.+.+..|.+. .. +...|+.++..+.....+....-....++++.|.+..+.+. .... +
T Consensus 158 ~~~p~glavd~~~g~lY~~-d~----------~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~t-d~~~~~ 225 (386)
T 3v65_B 158 LESPGGLAVDWVHDKLYWT-DS----------GTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWT-DWGNTP 225 (386)
T ss_dssp CSCCCCEEEETTTTEEEEE-ET----------TTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEE-ECSSSC
T ss_pred CCCccEEEEEeCCCeEEEE-cC----------CCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEe-ccCCCC
Confidence 1122345566655555442 11 11235666665553222222223456899999988777764 3334 7
Q ss_pred eEEEEeccceeEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEeeCCCceEEEECCCCCEE
Q 013884 220 SATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTRAECSVTSEWSPDGRYF 294 (434)
Q Consensus 220 ~i~l~d~~~~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~~~~~~~~~wspdg~~l 294 (434)
.|..+++.+.....+ .-..-+.|+|+|++..|.++..++ +.|+.+|++.. +.+.......+..++. ++..|
T Consensus 226 ~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~--~~I~~~d~dG~~~~~~~~~~~~~P~giav--~~~~l 301 (386)
T 3v65_B 226 RIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKH--HVIERANLDGSHRKAVISQGLPHPFAITV--FEDSL 301 (386)
T ss_dssp EEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTT--TEEEEECTTSCSCEEEECSSCSSEEEEEE--ETTEE
T ss_pred EEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCC--CEEEEEeCCCCeeEEEEECCCCCceEEEE--ECCEE
Confidence 899999876544443 233458899999999888887554 78999998743 2222212224445666 33355
Q ss_pred EEEEcCCceeeCCcEEEEe-ecCceeeee
Q 013884 295 MTATTAPRLQIDNGIKIFH-HNGSLFFKK 322 (434)
Q Consensus 295 ~tas~~~rl~~D~~i~iw~-~~g~~~~~~ 322 (434)
..+... .+.|..++ .+|+.+...
T Consensus 302 y~td~~-----~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 302 YWTDWH-----TKSINSANKFTGKNQEII 325 (386)
T ss_dssp EEEETT-----TTEEEEEETTTCCSCEEE
T ss_pred EEeeCC-----CCeEEEEECCCCcceEEE
Confidence 554442 67777777 677655443
No 239
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.92 E-value=0.00093 Score=61.98 Aligned_cols=105 Identities=10% Similarity=0.066 Sum_probs=66.7
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE
Q 013884 196 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ 273 (434)
Q Consensus 196 ~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~ 273 (434)
..+.++...++|..++ +..++.+..+|.++..+..+ .......+...++|++. +++ .+|.|..+|. +++.
T Consensus 215 ~~~~~~~~~~~g~l~v---~t~~~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~-v~t---~~ggl~~~d~-~g~~ 286 (330)
T 3hxj_A 215 WTVTRPAISEDGTIYV---TSLDGHLYAINPDGTEKWRFKTGKRIESSPVIGNTDTIY-FGS---YDGHLYAINP-DGTE 286 (330)
T ss_dssp CCCSCCEECTTSCEEE---EETTTEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEE-EEC---TTCEEEEECT-TSCE
T ss_pred cceeceEECCCCeEEE---EcCCCeEEEECCCCCEeEEeeCCCCccccceEcCCCeEE-Eec---CCCCEEEECC-CCcE
Confidence 4577888888886555 44467888888776666554 23334556677777654 455 3468999996 6666
Q ss_pred EEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884 274 LGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 274 i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~ 315 (434)
+..+... .+..+..+++|+.+ .++. ++.+++....
T Consensus 287 ~~~~~~~~~~~~~~~~d~~g~l~-~gt~------~G~~~~~~~~ 323 (330)
T 3hxj_A 287 KWNFETGSWIIATPVIDENGTIY-FGTR------NGKFYALFNL 323 (330)
T ss_dssp EEEEECSSCCCSCCEECTTCCEE-EECT------TSCEEEEEC-
T ss_pred EEEEEcCCccccceEEcCCCEEE-EEcC------CCeEEEEecc
Confidence 5555432 34446777888754 4666 7777766543
No 240
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.92 E-value=0.00064 Score=61.54 Aligned_cols=175 Identities=13% Similarity=0.125 Sum_probs=111.8
Q ss_pred eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCc-eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEE
Q 013884 145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATI 223 (434)
Q Consensus 145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l 223 (434)
..+.|+++| .|.+. +.. ++...|..++...+. ...+++........+++ +++++.+. ...++.+.+
T Consensus 24 ~Gl~~~~dg-~Lyvs-tg~--------~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~--~g~~lyv~-t~~~~~v~v 90 (266)
T 2iwa_A 24 QGLVYAEND-TLFES-TGL--------YGRSSVRQVALQTGKVENIHKMDDSYFGEGLTL--LNEKLYQV-VWLKNIGFI 90 (266)
T ss_dssp EEEEECSTT-EEEEE-ECS--------TTTCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEE-ETTCSEEEE
T ss_pred ccEEEeCCC-eEEEE-CCC--------CCCCEEEEEECCCCCEEEEEecCCCcceEEEEE--eCCEEEEE-EecCCEEEE
Confidence 468889886 44443 221 133457777765432 33344433222234454 46777764 567889999
Q ss_pred Eecc-ceeEEEcCCc-CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-------CceEEEECCCCCEE
Q 013884 224 FNKK-CRPILELGSG-PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-------CSVTSEWSPDGRYF 294 (434)
Q Consensus 224 ~d~~-~~~~~~~~~~-~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-------~~~~~~wspdg~~l 294 (434)
+|.. .+.+.++..+ + ....+++||+.++++. + .+.|.++|.++.+.+..+.-. ....++|. ||+.+
T Consensus 91 iD~~t~~v~~~i~~g~~-~g~glt~Dg~~l~vs~-g--s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~ly 165 (266)
T 2iwa_A 91 YDRRTLSNIKNFTHQMK-DGWGLATDGKILYGSD-G--TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVW 165 (266)
T ss_dssp EETTTTEEEEEEECCSS-SCCEEEECSSSEEEEC-S--SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred EECCCCcEEEEEECCCC-CeEEEEECCCEEEEEC-C--CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEE
Confidence 9986 4555556322 2 2345677898888775 3 469999999998777666531 34458888 78544
Q ss_pred EEEEcCCceeeCCcEEEEee-cCceeeeeecc---------------cceeeEEEcCCCCCCCCc
Q 013884 295 MTATTAPRLQIDNGIKIFHH-NGSLFFKKMFD---------------KLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 295 ~tas~~~rl~~D~~i~iw~~-~g~~~~~~~~~---------------~~~~~~w~p~~~~~~~~~ 343 (434)
+.... ++.|.+-|. +|+.+...... .+..++|.|+...+|-..
T Consensus 166 vn~~~------~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg 224 (266)
T 2iwa_A 166 ANIWQ------TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG 224 (266)
T ss_dssp EEETT------SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred EecCC------CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC
Confidence 44434 788999998 66666665542 457999999998888765
No 241
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.89 E-value=0.016 Score=53.81 Aligned_cols=223 Identities=5% Similarity=-0.107 Sum_probs=120.3
Q ss_pred CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCC----CCceeeeeecCCeeEEEE
Q 013884 25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDF----PKGILYRLRVPGVAAFEV 98 (434)
Q Consensus 25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~----~~~~~~~~~~~~v~~~~~ 98 (434)
...|+..|+.+++........ .....+.|.+++..|... .++.|+.++.... ...............+++
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~~----~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glav 84 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPNL----RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV 84 (316)
T ss_dssp BSSEEEEETTSCCCEEEECSC----SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEE
T ss_pred CCeEEEEECCCcceEehhcCC----CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEE
Confidence 467899998877654433221 223388999876655544 3579999997651 111111111234567777
Q ss_pred eCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEE
Q 013884 99 SKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLN 178 (434)
Q Consensus 99 sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~ 178 (434)
.+.++. + +|... ....|.++++.. ..........-.....++..|.+..|.+. . ... ...|+
T Consensus 85 d~~~~~-l-y~~d~---~~~~I~~~~~~g---~~~~~~~~~~~~~P~~iavdp~~g~ly~~-d--~~~-------~~~I~ 146 (316)
T 1ijq_A 85 DWIHSN-I-YWTDS---VLGTVSVADTKG---VKRKTLFRENGSKPRAIVVDPVHGFMYWT-D--WGT-------PAKIK 146 (316)
T ss_dssp ETTTTE-E-EEEET---TTTEEEEEETTS---SSEEEEEECTTCCEEEEEEETTTTEEEEE-E--CSS-------SCEEE
T ss_pred eecCCe-E-EEEEC---CCCEEEEEeCCC---CceEEEEECCCCCcceEEeCCCCCEEEEE-c--cCC-------CCeEE
Confidence 764222 2 22221 235777777654 21111111111234567778877766543 1 111 12467
Q ss_pred EEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc---C--CcCeeEEEECCCCCeEEE
Q 013884 179 YLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---G--SGPYNTVRWNPKGKFLCL 253 (434)
Q Consensus 179 ~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~---~--~~~~~~i~~sP~g~~l~~ 253 (434)
.++.+|.....+....-...+.++|+|++..+.++ ....+.|..+|.++.....+ . ...-..|++. +..|..
T Consensus 147 ~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~-D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~--~~~ly~ 223 (316)
T 1ijq_A 147 KGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFW 223 (316)
T ss_dssp EEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEE
T ss_pred EEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEE-ECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE--CCEEEE
Confidence 77776654332221223456799999998888874 45567999999876433332 1 1223456663 455555
Q ss_pred EecCCCCCeEEEEEccCCEEE
Q 013884 254 AGFGNLPGDMAFWDYVDGKQL 274 (434)
Q Consensus 254 ~~~~~~~g~i~iwd~~~~~~i 274 (434)
+..++ +.|..+|..+++.+
T Consensus 224 ~d~~~--~~V~~~~~~~g~~~ 242 (316)
T 1ijq_A 224 TDIIN--EAIFSANRLTGSDV 242 (316)
T ss_dssp EETTT--TEEEEEETTTCCCC
T ss_pred EECCC--CeEEEEeCCCCcce
Confidence 55543 67888887666433
No 242
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.88 E-value=0.01 Score=61.61 Aligned_cols=58 Identities=14% Similarity=0.233 Sum_probs=45.9
Q ss_pred CeEEEEEccCCEEEEEeeCCCc-eEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec
Q 013884 261 GDMAFWDYVDGKQLGTTRAECS-VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF 324 (434)
Q Consensus 261 g~i~iwd~~~~~~i~~~~~~~~-~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~~~ 324 (434)
|.|..||+.+++.+..+..+.. ..-.++..|..+++++. |+.|++||. +|+++.+...
T Consensus 455 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~------dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSA------DGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT------TSEEEEEETTTCCEEEEEEC
T ss_pred eeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECC------CCcEEEEECCCCccceeeeC
Confidence 7899999999999888776532 22466678888888888 999999997 6888876543
No 243
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.85 E-value=0.018 Score=53.30 Aligned_cols=238 Identities=9% Similarity=-0.003 Sum_probs=125.0
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc-----------------CCCCCCeeeecC-CCcEE
Q 013884 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM-----------------TKTTWPSIRFSS-DEAVA 64 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~-----------------~~~~~~~~~~S~-d~~~l 64 (434)
.+++++|+|++|.+.. .++.|..||..+++. ..+..... .......+.+.+ +++++
T Consensus 22 ~~i~~d~~g~~l~v~~-----~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~ 95 (322)
T 2fp8_A 22 NSFTFDSTNKGFYTSV-----QDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY 95 (322)
T ss_dssp CCEECCTTCSSEEEEC-----TTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE
T ss_pred eEEEEcCCCCEEEEEc-----CCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE
Confidence 4688999999666544 567899998776653 33332100 001223678887 77766
Q ss_pred EEecCCeEEEEeCCCCCCceeee----eecCCeeEEEEeC-CCCCeEEEEecCC-------------CCCCceEEEEEcC
Q 013884 65 CRMATNEIQFFDTTDFPKGILYR----LRVPGVAAFEVSK-APGSHVAVFVPES-------------KGSPASVQIYACG 126 (434)
Q Consensus 65 a~~~~~~i~v~~~~~~~~~~~~~----~~~~~v~~~~~sp-~~~~~ia~~~~~~-------------~~~~~~v~i~~~~ 126 (434)
+....+.|..++........... ........+.+.| ++.-+++- ... ....+.|..++..
T Consensus 96 v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d--~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 173 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTD--VSTLYDDRGVQQIMDTSDKTGRLIKYDPS 173 (322)
T ss_dssp EEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEE--SCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred EEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEEC--CcccccccccceehcccCCCceEEEEeCC
Confidence 66555668888865422111111 1123467788988 64322221 110 0123566666654
Q ss_pred CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCC----ceeeeecCCCCCeEEEE
Q 013884 127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT----HEGLVPLRKEGPVHDVQ 202 (434)
Q Consensus 127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~----~~~~v~l~~~~~i~~~~ 202 (434)
. .......... .....+.|+++|+.|++.- + +...|+.++..+. ......+ .+ ...++
T Consensus 174 ~---~~~~~~~~~~-~~p~gia~~~dg~~lyv~d-~----------~~~~I~~~~~~~~~~~~~~~~~~~--~g-P~gi~ 235 (322)
T 2fp8_A 174 T---KETTLLLKEL-HVPGGAEVSADSSFVLVAE-F----------LSHQIVKYWLEGPKKGTAEVLVKI--PN-PGNIK 235 (322)
T ss_dssp T---TEEEEEEEEE-SCCCEEEECTTSSEEEEEE-G----------GGTEEEEEESSSTTTTCEEEEEEC--SS-EEEEE
T ss_pred C---CEEEEeccCC-ccCcceEECCCCCEEEEEe-C----------CCCeEEEEECCCCcCCccceEEeC--CC-CCCeE
Confidence 3 2211111111 2234689999999776632 1 1113455554431 1111122 34 67899
Q ss_pred ECcCCCEEEEEEc--------cCCCeEEEEeccceeEEEcC--C----cCeeEEEECCCCCeEEEEecCCCCCeEEEEEc
Q 013884 203 WSYSGSEFAVVYG--------FMPASATIFNKKCRPILELG--S----GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 268 (434)
Q Consensus 203 wspdg~~~av~~g--------~~~~~i~l~d~~~~~~~~~~--~----~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~ 268 (434)
+.++|+.++...+ ...+.|..||.+++.+..+. . ..+..+.+ .+|+ |.+++..+ +.|..+++
T Consensus 236 ~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~-L~v~~~~~--~~i~~~~~ 311 (322)
T 2fp8_A 236 RNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGL-LYIGTLFH--GSVGILVY 311 (322)
T ss_dssp ECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTE-EEEECSSC--SEEEEEEC
T ss_pred ECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCE-EEEeecCC--CceEEEec
Confidence 9999985553322 11357888888777665552 1 23455665 3444 44454322 57888886
Q ss_pred cC
Q 013884 269 VD 270 (434)
Q Consensus 269 ~~ 270 (434)
..
T Consensus 312 ~~ 313 (322)
T 2fp8_A 312 DK 313 (322)
T ss_dssp --
T ss_pred cc
Confidence 53
No 244
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.78 E-value=0.023 Score=58.91 Aligned_cols=77 Identities=14% Similarity=0.167 Sum_probs=53.8
Q ss_pred CeEEEEecc-ceeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-Cc--eEEEECCCCCE
Q 013884 219 ASATIFNKK-CRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CS--VTSEWSPDGRY 293 (434)
Q Consensus 219 ~~i~l~d~~-~~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~--~~~~wspdg~~ 293 (434)
+.+..||++ ++.+.++ ...+...-.++..|.++++++ .+|.|+.||.++++.+..+..+ .+ .-+.|+.||+.
T Consensus 455 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt---~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~q 531 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGS---ADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQ 531 (689)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC---TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred eeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEEC---CCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEE
Confidence 568889986 4444444 233344446667788888876 6689999999999999888754 22 23888999985
Q ss_pred EEEEE
Q 013884 294 FMTAT 298 (434)
Q Consensus 294 l~tas 298 (434)
++...
T Consensus 532 yv~~~ 536 (689)
T 1yiq_A 532 YVTFM 536 (689)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55443
No 245
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.73 E-value=0.023 Score=50.93 Aligned_cols=198 Identities=17% Similarity=0.162 Sum_probs=115.4
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~ 80 (434)
+..|+|.|++..|.+... .++.|...|+. |+.++.+..... .....+++.+++.++++. .++.+.++++...
T Consensus 29 lSGla~~~~~~~L~aV~d----~~~~I~~ld~~-g~v~~~i~l~g~--~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~ 101 (255)
T 3qqz_A 29 ISSLTWSAQSNTLFSTIN----KPAAIVEMTTN-GDLIRTIPLDFV--KDLETIEYIGDNQFVISDERDYAIYVISLTPN 101 (255)
T ss_dssp EEEEEEETTTTEEEEEEE----TTEEEEEEETT-CCEEEEEECSSC--SSEEEEEECSTTEEEEEETTTTEEEEEEECTT
T ss_pred cceeEEeCCCCEEEEEEC----CCCeEEEEeCC-CCEEEEEecCCC--CChHHeEEeCCCEEEEEECCCCcEEEEEcCCC
Confidence 467999998887776552 46778888987 888888754321 233367888999887765 4579999988664
Q ss_pred CCc-eeeeee--------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-------eecccce
Q 013884 81 PKG-ILYRLR--------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-------SFFRCST 144 (434)
Q Consensus 81 ~~~-~~~~~~--------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-------~~~~~~~ 144 (434)
... ...... -.+...++|.|.++..+. ..+. .+..|..|+ .......+... ..+..+.
T Consensus 102 ~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~v--a~E~--~p~~i~~~~--g~~~~~~l~i~~~~~~~~~~~~~d~ 175 (255)
T 3qqz_A 102 SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWF--FKEK--NPIEVYKVN--GLLSSNELHISKDKALQRQFTLDDV 175 (255)
T ss_dssp CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEE--EEES--SSEEEEEEE--STTCSSCCEEEECHHHHHTCCSSCC
T ss_pred CeeeeeeeeccccccccccCCcceEEEeCCCCEEEE--EECc--CCceEEEEc--ccccCCceeeecchhhccccccCCc
Confidence 421 111121 124578999998443332 2222 233444444 10001111111 1223355
Q ss_pred eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCC--------CCeEEEEECcCCCEEEEEEcc
Q 013884 145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE--------GPVHDVQWSYSGSEFAVVYGF 216 (434)
Q Consensus 145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~--------~~i~~~~wspdg~~~av~~g~ 216 (434)
..+.++|.-..++++.+ ... .|..++..|.......|... ..-..|++.|+|+.+++ +
T Consensus 176 S~l~~dp~tg~lliLS~----~s~-------~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv---s 241 (255)
T 3qqz_A 176 SGAEFNQQKNTLLVLSH----ESR-------ALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV---S 241 (255)
T ss_dssp CEEEEETTTTEEEEEET----TTT-------EEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE---E
T ss_pred eeEEEcCCCCeEEEEEC----CCC-------eEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE---c
Confidence 67888888777777632 222 25555555554455555421 24578999999985553 4
Q ss_pred CCCeEEEEec
Q 013884 217 MPASATIFNK 226 (434)
Q Consensus 217 ~~~~i~l~d~ 226 (434)
++..++.|..
T Consensus 242 E~n~~y~f~~ 251 (255)
T 3qqz_A 242 EPNRFYRFTP 251 (255)
T ss_dssp TTTEEEEEEC
T ss_pred CCceEEEEEe
Confidence 5667776643
No 246
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.73 E-value=0.01 Score=54.79 Aligned_cols=208 Identities=10% Similarity=0.039 Sum_probs=112.9
Q ss_pred CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCC
Q 013884 24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPG 103 (434)
Q Consensus 24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 103 (434)
.++.|..+|.. |+.+..+.... ..+.++...+++.+++...++.|..|+.. .............+..+...+++
T Consensus 115 ~~~~l~~~d~~-g~~~~~~~~~~---~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g- 188 (330)
T 3hxj_A 115 MDGHLYAINTD-GTEKWRFKTKK---AIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDG- 188 (330)
T ss_dssp TTSEEEEECTT-SCEEEEEECSS---CCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTC-
T ss_pred cCCEEEEEcCC-CCEEEEEcCCC---ceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCC-
Confidence 46789999988 87766665432 34446677778887776666899999987 33212222223334555554442
Q ss_pred CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeC
Q 013884 104 SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD 183 (434)
Q Consensus 104 ~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~ 183 (434)
. +|+.. +.+..++ ++ +..+............+...++|.. .+.+ . ...|+.++..
T Consensus 189 ~---l~v~t-----~~l~~~d-~~---g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t-~-----------~~gl~~~~~~ 243 (330)
T 3hxj_A 189 T---IYFGS-----DKVYAIN-PD---GTEKWNFYAGYWTVTRPAISEDGTI-YVTS-L-----------DGHLYAINPD 243 (330)
T ss_dssp C---EEEES-----SSEEEEC-TT---SCEEEEECCSSCCCSCCEECTTSCE-EEEE-T-----------TTEEEEECTT
T ss_pred E---EEEEe-----CEEEEEC-CC---CcEEEEEccCCcceeceEECCCCeE-EEEc-C-----------CCeEEEECCC
Confidence 2 22211 4456666 33 3333333332233445555666643 2221 0 1135555433
Q ss_pred CCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCC
Q 013884 184 GTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPG 261 (434)
Q Consensus 184 ~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g 261 (434)
+......... ...+..+...+++..++ +..++.+..+|.+++.+..+ ....+.++...++|++.+ ++ .+|
T Consensus 244 g~~~~~~~~~-~~~~~~~~~~~~g~l~v---~t~~ggl~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~l~~-gt---~~G 315 (330)
T 3hxj_A 244 GTEKWRFKTG-KRIESSPVIGNTDTIYF---GSYDGHLYAINPDGTEKWNFETGSWIIATPVIDENGTIYF-GT---RNG 315 (330)
T ss_dssp SCEEEEEECS-SCCCSCCEECTTSCEEE---ECTTCEEEEECTTSCEEEEEECSSCCCSCCEECTTCCEEE-EC---TTS
T ss_pred CCEeEEeeCC-CCccccceEcCCCeEEE---ecCCCCEEEECCCCcEEEEEEcCCccccceEEcCCCEEEE-Ec---CCC
Confidence 3222222221 22234455666665444 55567899999766655444 455667788888888655 54 557
Q ss_pred eEEEEEccC
Q 013884 262 DMAFWDYVD 270 (434)
Q Consensus 262 ~i~iwd~~~ 270 (434)
.+.+...+.
T Consensus 316 ~~~~~~~~~ 324 (330)
T 3hxj_A 316 KFYALFNLE 324 (330)
T ss_dssp CEEEEEC--
T ss_pred eEEEEeccc
Confidence 888876543
No 247
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.71 E-value=0.0019 Score=57.88 Aligned_cols=157 Identities=14% Similarity=0.111 Sum_probs=98.4
Q ss_pred cceeEEEEeeCCCc-eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEcCCcCeeEEEECCCCCe
Q 013884 173 GESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILELGSGPYNTVRWNPKGKF 250 (434)
Q Consensus 173 g~~~l~~l~~~~~~-~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~~~~~~~~i~~sP~g~~ 250 (434)
|...|..++...+. ...++++ .........++++.+.++ ...++.+.+||.+ .+.+.++.... ....+++||+.
T Consensus 63 g~S~v~~vD~~Tgkv~~~~~l~--~~~FgeGit~~g~~ly~l-tw~~~~v~v~D~~t~~~~~ti~~~~-eG~glt~dg~~ 138 (262)
T 3nol_A 63 GRSSIRKVDIESGKTLQQIELG--KRYFGEGISDWKDKIVGL-TWKNGLGFVWNIRNLRQVRSFNYDG-EGWGLTHNDQY 138 (262)
T ss_dssp TEEEEEEECTTTCCEEEEEECC--TTCCEEEEEEETTEEEEE-ESSSSEEEEEETTTCCEEEEEECSS-CCCCEEECSSC
T ss_pred CCceEEEEECCCCcEEEEEecC--CccceeEEEEeCCEEEEE-EeeCCEEEEEECccCcEEEEEECCC-CceEEecCCCE
Confidence 44456666665432 3334443 334443344567777775 4567899999986 45555553211 22344467887
Q ss_pred EEEEecCCCCCeEEEEEccCCEEEEEeeCC-------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee
Q 013884 251 LCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK 322 (434)
Q Consensus 251 l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-------~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~ 322 (434)
|+++.. .+.|.++|..+.+.+..+.-. ....++|. +|+.++..-. ++.|.+.|. +|+.+...
T Consensus 139 L~~SdG---s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~------~~~I~vIDp~tG~V~~~I 208 (262)
T 3nol_A 139 LIMSDG---TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQ------TNKIVRIDPETGKVTGII 208 (262)
T ss_dssp EEECCS---SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT------SSEEEEECTTTCBEEEEE
T ss_pred EEEECC---CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEcc------CCeEEEEECCCCcEEEEE
Confidence 777652 358999999999877765431 23347887 7864443334 777888887 56655554
Q ss_pred ec--------------ccceeeEEEcCCCCCCCCc
Q 013884 323 MF--------------DKLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 323 ~~--------------~~~~~~~w~p~~~~~~~~~ 343 (434)
.. +.+..++|.|+...+|-..
T Consensus 209 d~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 209 DLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp ECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred ECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 43 2457799999998888776
No 248
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.70 E-value=0.035 Score=52.28 Aligned_cols=237 Identities=9% Similarity=-0.074 Sum_probs=131.1
Q ss_pred eeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCc
Q 013884 54 SIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQP 133 (434)
Q Consensus 54 ~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~ 133 (434)
|....+ ..+|+.+..+.|+..++..... ....-.......++|++.. ..| +|.... .+.|..+++.. ...
T Consensus 38 C~~~~~-~~~ll~~~~~~I~~i~~~g~~~-~~~~~~~~~~~~l~~d~~~-~~l-y~~D~~---~~~I~r~~~~g---~~~ 107 (349)
T 3v64_C 38 CKALGP-EPVLLFANRIDIRQVLPHRSEY-TLLLNNLENAIALDFHHRR-ELV-FWSDVT---LDRILRANLNG---SNV 107 (349)
T ss_dssp EEESSS-CCEEEEECBSCEEEECTTSCCE-EEEECSCSCEEEEEEETTT-TEE-EEEETT---TTEEEEEETTS---CSC
T ss_pred cccccc-CceeEeecccceEEEeCCCCee-EEeecCCCceEEEEEeccc-cEE-EEEecc---CCceEEEecCC---CCc
Confidence 544444 4455556667788887755321 1111123457788998763 333 333321 24666666654 221
Q ss_pred eeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEE
Q 013884 134 LARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVV 213 (434)
Q Consensus 134 i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~ 213 (434)
.............+++.+.+..|.+. .. +...|+.++..+.....+....-....++++.|.+..+.+.
T Consensus 108 ~~~~~~~~~~p~glavd~~~g~ly~~-d~----------~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~t 176 (349)
T 3v64_C 108 EEVVSTGLESPGGLAVDWVHDKLYWT-DS----------GTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWT 176 (349)
T ss_dssp EEEECSSCSCCCEEEEETTTTEEEEE-ET----------TTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEE
T ss_pred eEEEeCCCCCccEEEEecCCCeEEEE-cC----------CCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEe
Confidence 11111111122356666656655442 11 11246666666653322222223456899999977777663
Q ss_pred EccCC-CeEEEEeccceeEEEcC---CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEeeCCCceEEEE
Q 013884 214 YGFMP-ASATIFNKKCRPILELG---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTRAECSVTSEW 287 (434)
Q Consensus 214 ~g~~~-~~i~l~d~~~~~~~~~~---~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~~~~~~~~~w 287 (434)
.... +.|..+++++.....+. -..-+.|+|+|++..|..+..++ +.|+.+|.+.. +.+.......+..++.
T Consensus 177 -d~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~--~~I~~~~~dG~~~~~~~~~~~~~P~giav 253 (349)
T 3v64_C 177 -DWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKH--HVIERANLDGSHRKAVISQGLPHPFAITV 253 (349)
T ss_dssp -ECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTSCSCEEEECSSCSSEEEEEE
T ss_pred -ccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCC--CEEEEEeCCCCceEEEEeCCCCCceEEEE
Confidence 4444 78999998876555442 23458899999999888887654 78999998743 2222222224445666
Q ss_pred CCCCCEEEEEEcCCceeeCCcEEEEe-ecCceeee
Q 013884 288 SPDGRYFMTATTAPRLQIDNGIKIFH-HNGSLFFK 321 (434)
Q Consensus 288 spdg~~l~tas~~~rl~~D~~i~iw~-~~g~~~~~ 321 (434)
++..|..+... .+.|...+ .+|+.+..
T Consensus 254 --~~~~ly~td~~-----~~~V~~~~~~~G~~~~~ 281 (349)
T 3v64_C 254 --FEDSLYWTDWH-----TKSINSANKFTGKNQEI 281 (349)
T ss_dssp --ETTEEEEEETT-----TTEEEEEETTTCCSCEE
T ss_pred --ECCEEEEecCC-----CCeEEEEEccCCCccEE
Confidence 33455555442 56777777 57765443
No 249
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.67 E-value=0.022 Score=53.92 Aligned_cols=95 Identities=9% Similarity=0.053 Sum_probs=61.3
Q ss_pred ccCCCeEEEEecc-ceeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---CceEEEECCC
Q 013884 215 GFMPASATIFNKK-CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPD 290 (434)
Q Consensus 215 g~~~~~i~l~d~~-~~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~~~~~~wspd 290 (434)
+..++.+..+|.+ ++.+..........+.. ++..|.+++ .+|.|..+|..+++.+...... ....... .
T Consensus 245 ~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~--~~~~l~~~~---~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~ 317 (376)
T 3q7m_A 245 LAYNGNLTALDLRSGQIMWKRELGSVNDFIV--DGNRIYLVD---QNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--Y 317 (376)
T ss_dssp ECTTSCEEEEETTTCCEEEEECCCCEEEEEE--ETTEEEEEE---TTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--E
T ss_pred EecCcEEEEEECCCCcEEeeccCCCCCCceE--ECCEEEEEc---CCCeEEEEECCCCcEEEeecccCCCcccCCEE--E
Confidence 4456789999985 55555554444444444 356666666 4468999999999888776521 1222222 3
Q ss_pred CCEEEEEEcCCceeeCCcEEEEee-cCceeeee
Q 013884 291 GRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK 322 (434)
Q Consensus 291 g~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~ 322 (434)
+..|++++. ++.+.++|. +|+++...
T Consensus 318 ~~~l~v~~~------~g~l~~~d~~tG~~~~~~ 344 (376)
T 3q7m_A 318 NGNLVVGDS------EGYLHWINVEDGRFVAQQ 344 (376)
T ss_dssp TTEEEEECT------TSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeC------CCeEEEEECCCCcEEEEE
Confidence 567788877 889999996 66665443
No 250
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.65 E-value=0.014 Score=54.04 Aligned_cols=241 Identities=9% Similarity=0.025 Sum_probs=121.8
Q ss_pred eeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeee--------------------ecCCeeEEEEeCCCCCeEEEEecC
Q 013884 54 SIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRL--------------------RVPGVAAFEVSKAPGSHVAVFVPE 112 (434)
Q Consensus 54 ~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~--------------------~~~~v~~~~~sp~~~~~ia~~~~~ 112 (434)
.+.|.++++++... .++.|..|+...... ..... .......+++.++.+.++ +.+
T Consensus 23 ~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~---v~d 98 (322)
T 2fp8_A 23 SFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY---IVD 98 (322)
T ss_dssp CEECCTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE---EEE
T ss_pred EEEEcCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE---EEE
Confidence 68999999844444 567999998765321 11110 012467788887323222 111
Q ss_pred CCCCCceEEEEEcCCCCCCCceeeeee--cccceeEEEECC-CCCeEEEEEEecccccCce-------eecceeEEEEee
Q 013884 113 SKGSPASVQIYACGKDLQSQPLARRSF--FRCSTVQLNWNR-GSTGLLAVAQSDVDKTNQS-------YYGESKLNYLTT 182 (434)
Q Consensus 113 ~~~~~~~v~i~~~~~~~~~~~i~~~~~--~~~~~~~~~ws~-~G~~l~~~~~~~~d~~~~~-------~~g~~~l~~l~~ 182 (434)
.. ..+..++..... ...+..... .......+...+ +|.. .+ +.......... ......|+.++.
T Consensus 99 ~~---~~i~~~d~~~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l-~v-~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~ 172 (322)
T 2fp8_A 99 CY---YHLSVVGSEGGH-ATQLATSVDGVPFKWLYAVTVDQRTGIV-YF-TDVSTLYDDRGVQQIMDTSDKTGRLIKYDP 172 (322)
T ss_dssp TT---TEEEEECTTCEE-CEEEESEETTEECSCEEEEEECTTTCCE-EE-EESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred CC---CCEEEEeCCCCE-EEEecccCCCCcccccceEEEecCCCEE-EE-ECCcccccccccceehcccCCCceEEEEeC
Confidence 11 235555543210 011111000 001234678888 8863 33 22110000000 001234666665
Q ss_pred CCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce------eEEEcCCcCeeEEEECCCCCeEEEEec
Q 013884 183 DGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR------PILELGSGPYNTVRWNPKGKFLCLAGF 256 (434)
Q Consensus 183 ~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~------~~~~~~~~~~~~i~~sP~g~~l~~~~~ 256 (434)
.+.....+ ...-...+.++|+|+|+.+.+. ....+.|..|++.+. ....+ .+ -..+++.++|++.++...
T Consensus 173 ~~~~~~~~-~~~~~~p~gia~~~dg~~lyv~-d~~~~~I~~~~~~~~~~~~~~~~~~~-~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 173 STKETTLL-LKELHVPGGAEVSADSSFVLVA-EFLSHQIVKYWLEGPKKGTAEVLVKI-PN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp TTTEEEEE-EEEESCCCEEEECTTSSEEEEE-EGGGTEEEEEESSSTTTTCEEEEEEC-SS-EEEEEECTTSCEEEEEEE
T ss_pred CCCEEEEe-ccCCccCcceEECCCCCEEEEE-eCCCCeEEEEECCCCcCCccceEEeC-CC-CCCeEECCCCCEEEEecC
Confidence 43321111 1111234679999999977764 445679999988631 11222 23 567999999986555432
Q ss_pred C-------CCCCeEEEEEccCCEEEEEeeCC------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884 257 G-------NLPGDMAFWDYVDGKQLGTTRAE------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 257 ~-------~~~g~i~iwd~~~~~~i~~~~~~------~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
. ...+.|..+|.+ ++.+..+... .+..+.+ .+|+.+++... .+.|.++++..
T Consensus 249 ~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~------~~~i~~~~~~~ 313 (322)
T 2fp8_A 249 ELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLF------HGSVGILVYDK 313 (322)
T ss_dssp ETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSS------CSEEEEEEC--
T ss_pred cccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecC------CCceEEEeccc
Confidence 0 012568888874 6666555432 3444555 45555544444 77788887654
No 251
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.63 E-value=0.018 Score=51.65 Aligned_cols=183 Identities=9% Similarity=0.144 Sum_probs=99.1
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCC
Q 013884 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDF 80 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~ 80 (434)
..|.|+ +|....+.+.+ ....|+++|+++|+.+.++.... ... ..-.++++..|..+ .++.+.+||..++
T Consensus 46 qGL~~~-~~~LyestG~~---g~S~v~~vD~~Tgkv~~~~~l~~---~~F-geGit~~g~~ly~ltw~~~~v~v~D~~t~ 117 (262)
T 3nol_A 46 EGFFYR-NGYFYESTGLN---GRSSIRKVDIESGKTLQQIELGK---RYF-GEGISDWKDKIVGLTWKNGLGFVWNIRNL 117 (262)
T ss_dssp EEEEEE-TTEEEEEEEET---TEEEEEEECTTTCCEEEEEECCT---TCC-EEEEEEETTEEEEEESSSSEEEEEETTTC
T ss_pred ceEEEE-CCEEEEECCCC---CCceEEEEECCCCcEEEEEecCC---ccc-eeEEEEeCCEEEEEEeeCCEEEEEECccC
Confidence 568898 67666555521 13489999999999998876542 222 22233445444444 4789999999887
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc-----cceeEEEECCCCCe
Q 013884 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR-----CSTVQLNWNRGSTG 155 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~-----~~~~~~~ws~~G~~ 155 (434)
... .++..++ ....++++++..+. . .+ .+.|.++|..+ .+.+.+..... .....+.|. +|.
T Consensus 118 ~~~--~ti~~~~-eG~glt~dg~~L~~---S--dG-s~~i~~iDp~T---~~v~~~I~V~~~g~~~~~lNELe~~-~G~- 183 (262)
T 3nol_A 118 RQV--RSFNYDG-EGWGLTHNDQYLIM---S--DG-TPVLRFLDPES---LTPVRTITVTAHGEELPELNELEWV-DGE- 183 (262)
T ss_dssp CEE--EEEECSS-CCCCEEECSSCEEE---C--CS-SSEEEEECTTT---CSEEEEEECEETTEECCCEEEEEEE-TTE-
T ss_pred cEE--EEEECCC-CceEEecCCCEEEE---E--CC-CCeEEEEcCCC---CeEEEEEEeccCCccccccceeEEE-CCE-
Confidence 643 3444332 22344455333222 2 22 46788888776 45555544321 111235665 553
Q ss_pred EEEEEEecccccCceeecceeEEEEeeCCCc-eeeeecC-----------CCCCeEEEEECcCCCEEEEEEccCC
Q 013884 156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLR-----------KEGPVHDVQWSYSGSEFAVVYGFMP 218 (434)
Q Consensus 156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~-----------~~~~i~~~~wspdg~~~av~~g~~~ 218 (434)
|.+. . +....+..++...+. ...+.+. .....+.+||+|+++.|.|..-..|
T Consensus 184 lyan--~---------w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp 247 (262)
T 3nol_A 184 IFAN--V---------WQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWP 247 (262)
T ss_dssp EEEE--E---------TTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCS
T ss_pred EEEE--E---------ccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCC
Confidence 3321 1 012234555443221 2222221 1235689999999999888533343
No 252
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.62 E-value=9.4e-05 Score=70.81 Aligned_cols=62 Identities=6% Similarity=0.045 Sum_probs=39.1
Q ss_pred CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCC
Q 013884 10 VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFP 81 (434)
Q Consensus 10 ~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~ 81 (434)
++..|++.+ .|+.|..||+.+|+.+.++.. . ... +..+..++.+++.+ .++.|..||..+..
T Consensus 8 ~~~~v~~gs-----~dg~v~a~d~~tG~~~W~~~~-~---~~~-s~p~~~~g~~~v~~s~dg~l~a~d~~tG~ 70 (369)
T 2hz6_A 8 PETLLFVST-----LDGSLHAVSKRTGSIKWTLKE-D---PVL-QVPTHVEEPAFLPDPNDGSLYTLGSKNNE 70 (369)
T ss_dssp CTTEEEEEE-----TTSEEEEEETTTCCEEEEEEC-C---CSC-CCC-----CCEEECTTTCCEEEC-----C
T ss_pred eCCEEEEEc-----CCCEEEEEECCCCCEEEEecC-C---Cce-ecceEcCCCEEEEeCCCCEEEEEECCCCc
Confidence 577788777 789999999999999888765 2 222 44456678666664 67899999986644
No 253
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.62 E-value=0.00084 Score=69.81 Aligned_cols=227 Identities=5% Similarity=-0.115 Sum_probs=117.1
Q ss_pred CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCC----CCceeeeeecCCeeEEEE
Q 013884 25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDF----PKGILYRLRVPGVAAFEV 98 (434)
Q Consensus 25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~----~~~~~~~~~~~~v~~~~~ 98 (434)
...|++.++.+++....+... .....++|.+++..|... ..+.|+.+++... .........+.....+++
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~----~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glav 460 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNL----RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV 460 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCC----TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEEC
T ss_pred ccceEEEeCCCCcceeeeccC----cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEE
Confidence 356777787766543322221 223378999877766655 3468999987641 111111111223445666
Q ss_pred eCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEE
Q 013884 99 SKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLN 178 (434)
Q Consensus 99 sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~ 178 (434)
.+.++.+ +|.. ...+.|.++++.. ................+++.|.+..|++. |... ...|+
T Consensus 461 D~~~g~L--Y~tD---~~~~~I~v~d~dg---~~~~~l~~~~~~~P~giavDp~~g~ly~t-----d~~~-----~~~I~ 522 (699)
T 1n7d_A 461 DWIHSNI--YWTD---SVLGTVSVADTKG---VKRKTLFREQGSKPRAIVVDPVHGFMYWT-----DWGT-----PAKIK 522 (699)
T ss_dssp CCSSSBC--EECC---TTTSCEEEEBSSS---CCEEEECCCSSCCCCCEECCSSSSCCEEC-----CCSS-----SCCEE
T ss_pred EeeCCcE--EEEe---ccCCeEEEEecCC---CceEEEEeCCCCCcceEEEccCCCcEEEc-----ccCC-----CCeEE
Confidence 6442222 2221 2234677777643 21111111111223466777776665442 1100 12356
Q ss_pred EEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEcCC-----cCeeEEEECCCCCeEEE
Q 013884 179 YLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGS-----GPYNTVRWNPKGKFLCL 253 (434)
Q Consensus 179 ~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~~~-----~~~~~i~~sP~g~~l~~ 253 (434)
.++..+.....+....-...+.|+|+|++..|.++ ....+.|..+|+.+.....+.. ..-..|++ ++..|++
T Consensus 523 ~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~a-D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glav--d~~~lyw 599 (699)
T 1n7d_A 523 KGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFW 599 (699)
T ss_dssp BCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEE-ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEE--ETTEEEE
T ss_pred EEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEE-ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEE--ECCEEEE
Confidence 66655543222211112334689999998877764 4556799999987644333321 11223444 3446666
Q ss_pred EecCCCCCeEEEEEccCCEEEEEee
Q 013884 254 AGFGNLPGDMAFWDYVDGKQLGTTR 278 (434)
Q Consensus 254 ~~~~~~~g~i~iwd~~~~~~i~~~~ 278 (434)
+..++ +.|..+|..+++.+..+.
T Consensus 600 td~~~--~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 600 TDIIN--EAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp ECSTT--TCEEEEETTTEEEEECCC
T ss_pred EeCCC--CeEEEEEccCCCceEEee
Confidence 65543 689999988887776654
No 254
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.59 E-value=0.044 Score=50.50 Aligned_cols=259 Identities=8% Similarity=-0.008 Sum_probs=144.7
Q ss_pred ecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC---------------Ce
Q 013884 7 CLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT---------------NE 71 (434)
Q Consensus 7 fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~---------------~~ 71 (434)
|+++|.+|...... .+..|...+.. |.....+.... +--++++|.+++.... ..
T Consensus 21 ~~~~g~~iy~~n~~---d~~~ly~~~~d-g~~~~~l~~~~-------~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~ 89 (302)
T 3s25_A 21 FCESDGEVFFSNTN---DNGRLYAMNID-GSNIHKLSNDT-------AMYINADKNYVYYVRNNNQKITSQTFFSYDRNS 89 (302)
T ss_dssp EEEETTEEEEEEGG---GTTEEEEEETT-SCSCEEEEEEE-------EEEEEECSSEEEEEEECC------CCSSCCSEE
T ss_pred EEEeCCEEEEEeCC---CCceEEEEcCC-CCCCEEccCCc-------eeeEEEcCCEEEEEECCCCcccccceeccCCCe
Confidence 67889988876532 23556666643 43334443321 3356889999988742 24
Q ss_pred EEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECC
Q 013884 72 IQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR 151 (434)
Q Consensus 72 i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~ 151 (434)
|+..++...+. ..+... ....|+++ +..|. |...+......|...++.. .....++-... ..+++
T Consensus 90 Iy~i~~dg~~~---~~l~~~--~~~~~s~~-g~~Iy-~~~~~~~~~~~Iy~~~~dG----s~~~~lt~~~~----~~~~~ 154 (302)
T 3s25_A 90 LCRIKRNGHGS---TVLDPD--PCIYASLI-GNYIY-YLHYDTQTATSLYRIRIDG----EEKKKIKNHYL----FTCNT 154 (302)
T ss_dssp EEEEETTSCCC---EEEECS--CEEEEEEE-TTEEE-EEEESSSSCEEEEEEETTS----CCCEEEESSCC----CCSEE
T ss_pred EEEEeCCCCcc---eEeecC--CccEEEEe-CCEEE-EEeecCCCCceEEEEECCC----CCeEEEeCCCc----eEeeE
Confidence 55555554321 223222 22356776 44443 3321112223455555543 22222322222 34677
Q ss_pred CCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeE
Q 013884 152 GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI 231 (434)
Q Consensus 152 ~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~ 231 (434)
+|+.|... .+ +...|+.+++.+....++ + ++.... .++|+++.++.+.......|..-++.+...
T Consensus 155 ~g~~iy~t----~~-------g~~~Iy~~~l~g~~~~~l-~--~~~~~~-~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~ 219 (302)
T 3s25_A 155 SDRYFYYN----NP-------KNGQLYRYDTASQSEALF-Y--DCNCYK-PVVLDDTNVYYMDVNRDNAIVHVNINNPNP 219 (302)
T ss_dssp ETTEEEEE----CT-------TTCCEEEEETTTTEEEEE-E--CSCEEE-EEEEETTEEEEEEGGGTTEEEEECSSSCCC
T ss_pred ECCEEEEE----eC-------CCceEEEEECCCCCEEEE-e--CCCccc-eeeecCCEEEEEEcCCCcEEEEEECCCCCe
Confidence 88887653 11 334588898888765554 2 244443 456999999876554446888888887666
Q ss_pred EEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013884 232 LELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKI 311 (434)
Q Consensus 232 ~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~i 311 (434)
..+....+ ..|+|+|++|..+... ..+.|+.-+++.......... . ...+++.+.+|...... .+.|..
T Consensus 220 ~~Lt~~~~--~~~~~~g~~Iy~~~~~-~~~~i~~~~~DG~~r~~l~~~-~--~~~i~i~~d~Iy~td~~-----~~~i~~ 288 (302)
T 3s25_A 220 VVLTEANI--EHYNVYGSLIFYQRGG-DNPALCVVKNDGTGFKELAKG-E--FCNINVTSQYVYFTDFV-----SNKEYC 288 (302)
T ss_dssp EECSCSCE--EEEEEETTEEEEEECS-SSCEEEEEETTSCCCEEEEES-C--EEEEEECSSEEEEEETT-----TCCEEE
T ss_pred EEEeCCCc--ceEEECCCEEEEEECC-CCcEEEEEECCCCccEEeeCC-c--cceEEEeCCEEEEEECC-----CCeEEE
Confidence 66654444 4589999999876432 226788888765422222222 2 23566778888776642 334444
Q ss_pred EeecCc
Q 013884 312 FHHNGS 317 (434)
Q Consensus 312 w~~~g~ 317 (434)
-+++|.
T Consensus 289 ~~~dGs 294 (302)
T 3s25_A 289 TSTQNP 294 (302)
T ss_dssp EESSSC
T ss_pred EECCCC
Confidence 455554
No 255
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.59 E-value=0.062 Score=52.28 Aligned_cols=139 Identities=9% Similarity=0.008 Sum_probs=69.7
Q ss_pred ceEEecCC---CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCC-----eEEE
Q 013884 3 LLLTCLRV---GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN-----EIQF 74 (434)
Q Consensus 3 ~~l~fSP~---g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~-----~i~v 74 (434)
..|+|+|+ |+..++-. . +.|+.+|..+++.. .+...- .....++|+++|+++++...+ .+..
T Consensus 142 ~gvavd~~s~~g~Lyv~D~-----~-~~I~~id~~~g~v~-~~~~~~---~~P~giavd~dG~lyVad~~~~~~~~gv~~ 211 (433)
T 4hw6_A 142 WRMMFDPNSNYDDLYWVGQ-----R-DAFRHVDFVNQYVD-IKTTNI---GQCADVNFTLNGDMVVVDDQSSDTNTGIYL 211 (433)
T ss_dssp CEEEECTTTTTCEEEEECB-----T-SCEEEEETTTTEEE-EECCCC---SCEEEEEECTTCCEEEEECCSCTTSEEEEE
T ss_pred ceEEEccccCCCEEEEEeC-----C-CCEEEEECCCCEEE-EeecCC---CCccEEEECCCCCEEEEcCCCCcccceEEE
Confidence 47899995 55444422 2 78999998887654 333211 223378999999955554321 2333
Q ss_pred EeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec--ccceeEEEECCC
Q 013884 75 FDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF--RCSTVQLNWNRG 152 (434)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~--~~~~~~~~ws~~ 152 (434)
++...................++++|..+.+ |+.+. ..+.|+.++... +......... ......+.|+|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~P~giavd~~~G~l---yv~d~--~~~~V~~~d~~~---g~~~~~~~~~~~~~~~~~ia~dpd 283 (433)
T 4hw6_A 212 FTRASGFTERLSLCNARGAKTCAVHPQNGKI---YYTRY--HHAMISSYDPAT---GTLTEEEVMMDTKGSNFHIVWHPT 283 (433)
T ss_dssp ECGGGTTCCEEEEEECSSBCCCEECTTTCCE---EECBT--TCSEEEEECTTT---CCEEEEEEECSCCSSCEEEEECTT
T ss_pred EECCCCeeccccccccCCCCEEEEeCCCCeE---EEEEC--CCCEEEEEECCC---CeEEEEEeccCCCCCcccEEEeCC
Confidence 3332211100111123445667788842332 22221 224566666543 2221111111 111235999999
Q ss_pred CCeEEEE
Q 013884 153 STGLLAV 159 (434)
Q Consensus 153 G~~l~~~ 159 (434)
|+.|.+.
T Consensus 284 G~~LYva 290 (433)
T 4hw6_A 284 GDWAYII 290 (433)
T ss_dssp SSEEEEE
T ss_pred CCEEEEE
Confidence 9976653
No 256
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.56 E-value=0.087 Score=55.44 Aligned_cols=269 Identities=8% Similarity=0.060 Sum_probs=143.7
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCC-CCeeeecCCCcEEEEecCCeEEEEeCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTT-WPSIRFSSDEAVACRMATNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~-~~~~~~S~d~~~la~~~~~~i~v~~~~~~ 80 (434)
|++|...++|+..+... ..|.+||..+++.. .+.... .... +.++...+++.+.+...++.|..|+....
T Consensus 133 i~~i~~d~~g~lwi~t~-------~gl~~~~~~~~~~~-~~~~~~-~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~ 203 (795)
T 4a2l_A 133 VNGIEEISPEQLLISTP-------EGLIMFDIKESKFI-DDSFST-AMHKTIASTLYRQGDQIYIGTSTDGLYTYSITQK 203 (795)
T ss_dssp CCEEEEEETTEEEEEET-------TEEEEEETTTTEEE-CSSSCH-HHHTCCEEEEEEETTEEEEEESSSCEEEEETTTC
T ss_pred EEEEEECCCCCEEEEEC-------CceEEEECCCCEEE-eccCCC-CCCcceEEEEECCCCCEEEEECCCCEEEEeCCCC
Confidence 66777788887766432 45888887766432 221100 0012 54677777888777555557888987553
Q ss_pred CCcee-eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee--------ecccceeEEEECC
Q 013884 81 PKGIL-YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS--------FFRCSTVQLNWNR 151 (434)
Q Consensus 81 ~~~~~-~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~--------~~~~~~~~~~ws~ 151 (434)
..... .......|.++...+++. +|+... ..-+.+|+... .+ +.... .....+.++...+
T Consensus 204 ~~~~~~~~~~~~~i~~i~~d~~g~----lwigt~---~~Gl~~~~~~~---~~-~~~~~~~~~~~~~l~~~~i~~i~~d~ 272 (795)
T 4a2l_A 204 TFEKVIPILGTKQIQAILQQSPTR----IWVATE---GAGLFLINPKT---KE-IKNYLHSPSNPKSISSNYIRSLAMDS 272 (795)
T ss_dssp CEEECC----CCCEEEEEEEETTE----EEEEEB---SSCEEEEETTT---TE-EEEECCCTTCTTSCSCSBEEEEEECT
T ss_pred eEEEecCCCCCCeeEEEEEcCCCC----EEEEEC---CCCeEEEeCCC---Ce-EEEeecCCCCccccCCCeEEEEEEcC
Confidence 21110 001123455555544421 121110 11245555433 11 11110 1122345566666
Q ss_pred CCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC-------CCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 013884 152 GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-------KEGPVHDVQWSYSGSEFAVVYGFMPASATIF 224 (434)
Q Consensus 152 ~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-------~~~~i~~~~wspdg~~~av~~g~~~~~i~l~ 224 (434)
+|...+ .+ + ..|+.++.....-..+... ....|.++...++|...+ |...+-+..|
T Consensus 273 ~g~lWi-gt----~---------~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi---gt~~~Gl~~~ 335 (795)
T 4a2l_A 273 QNRLWI-GT----F---------NDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWL---GTYFGGLNYY 335 (795)
T ss_dssp TSCEEE-EE----S---------SCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEE---EESSSCEEEE
T ss_pred CCCEEE-Ee----C---------ChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEE---EECCCCeEEe
Confidence 666332 11 0 1244444322211111100 135799999999987655 5555678888
Q ss_pred eccceeEEEc---------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe----------eCCCceEE
Q 013884 225 NKKCRPILEL---------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT----------RAECSVTS 285 (434)
Q Consensus 225 d~~~~~~~~~---------~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~----------~~~~~~~~ 285 (434)
+........+ ....|.++...++|.+.+ |. .++-|..||..+++..... ....+..+
T Consensus 336 ~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWi-Gt---~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i 411 (795)
T 4a2l_A 336 HPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWI-GT---NDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAV 411 (795)
T ss_dssp CGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEE-EE---SSSCEEEECTTTCCEEEECCC------CCSCSCEEEE
T ss_pred CCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEE-EE---CCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEE
Confidence 8754433222 234588899999998655 44 2346999998876443221 12345567
Q ss_pred EECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884 286 EWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 286 ~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~ 317 (434)
...++|+.|..|+. ++++.+|+..+.
T Consensus 412 ~~d~~g~~lWigt~------~~Gl~~~d~~~~ 437 (795)
T 4a2l_A 412 YVDEKKSLVYIGTH------AGGLSILHRNSG 437 (795)
T ss_dssp EEETTTTEEEEEET------TTEEEEEETTTC
T ss_pred EEcCCCCEEEEEeC------cCceeEEeCCCC
Confidence 78889986677777 788888887543
No 257
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.56 E-value=0.0066 Score=59.18 Aligned_cols=152 Identities=13% Similarity=0.150 Sum_probs=90.5
Q ss_pred eEEEECC-CCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC----
Q 013884 145 VQLNWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA---- 219 (434)
Q Consensus 145 ~~~~ws~-~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~---- 219 (434)
..+.++| ++..|.+. ... ..|+.++..+.....+ .........++|+++|+.+.+. ....+
T Consensus 140 ~~lavdp~~~g~Lyv~-d~~-----------~~I~~id~~~~~v~~~-~~~~~~P~~ia~d~~G~~lyva-d~~~~~~~~ 205 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLV-GEQ-----------HPTRLIDFEKEYVSTV-YSGLSKVRTICWTHEADSMIIT-NDQNNNDRP 205 (430)
T ss_dssp CEEEEETTEEEEEEEE-EBT-----------EEEEEEETTTTEEEEE-ECCCSCEEEEEECTTSSEEEEE-ECCSCTTSE
T ss_pred CEEEECCCCCCeEEEE-eCC-----------CcEEEEECCCCEEEEE-ecCCCCcceEEEeCCCCEEEEE-eCCCCcccc
Confidence 4677787 34554442 211 2356666655432222 2234557899999999966663 33211
Q ss_pred eEEEEeccceeE--EEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee--C-CCceEEEECCCCCE
Q 013884 220 SATIFNKKCRPI--LEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR--A-ECSVTSEWSPDGRY 293 (434)
Q Consensus 220 ~i~l~d~~~~~~--~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~--~-~~~~~~~wspdg~~ 293 (434)
.+..++..+... ..+ .....+.++++|++..|.++..++ +.|..+|..++....... . .....++|+|+|++
T Consensus 206 ~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~--~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~ 283 (430)
T 3tc9_A 206 NNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNA--GQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNY 283 (430)
T ss_dssp EEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTT--TEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSE
T ss_pred eEEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCC--CEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCE
Confidence 344455443221 122 123457789999444455555443 799999998775422222 2 24667999999997
Q ss_pred EEEEEcCCceeeCCcEEEEeecCc
Q 013884 294 FMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 294 l~tas~~~rl~~D~~i~iw~~~g~ 317 (434)
|+.+... .+.|..++++|.
T Consensus 284 lyv~d~~-----~~~I~~~~~d~~ 302 (430)
T 3tc9_A 284 AYIVVVN-----QHYILRSDYDWK 302 (430)
T ss_dssp EEEEETT-----TTEEEEEEEETT
T ss_pred EEEEECC-----CCEEEEEeCCcc
Confidence 7777653 778999998763
No 258
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.55 E-value=0.049 Score=50.02 Aligned_cols=233 Identities=8% Similarity=-0.042 Sum_probs=118.5
Q ss_pred CCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeec-CCeeEEEEeCCCCCeEEEEec
Q 013884 34 ETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRV-PGVAAFEVSKAPGSHVAVFVP 111 (434)
Q Consensus 34 ~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~~ia~~~~ 111 (434)
...+.+.+|... .....+.|+++++++++- .++.|+.|+.... ....... .....++++|++..+++-+
T Consensus 20 ~~~~~~~~~p~~----~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~---~~~~~~~~~~p~gia~~~dG~l~vad~-- 90 (306)
T 2p4o_A 20 APAKIITSFPVN----TFLENLASAPDGTIFVTNHEVGEIVSITPDGN---QQIHATVEGKVSGLAFTSNGDLVATGW-- 90 (306)
T ss_dssp CCEEEEEEECTT----CCEEEEEECTTSCEEEEETTTTEEEEECTTCC---EEEEEECSSEEEEEEECTTSCEEEEEE--
T ss_pred CCceEeEeCCCC----CCcceEEECCCCCEEEEeCCCCeEEEECCCCc---eEEEEeCCCCceeEEEcCCCcEEEEec--
Confidence 334555666432 122278999999977665 4579999987642 1122222 3467788888854222221
Q ss_pred CCCCCCceEEEEEcCCCCCCCceeeeeeccc-ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeee
Q 013884 112 ESKGSPASVQIYACGKDLQSQPLARRSFFRC-STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV 190 (434)
Q Consensus 112 ~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~-~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v 190 (434)
......|..++.++ +........... -...+...+ +..+++ +.. +...||.++..+......
T Consensus 91 --~~~~~~v~~~d~~~---g~~~~~~~~~~~~~~~g~~~~~-~~~~~v-~d~----------~~g~i~~~d~~~~~~~v~ 153 (306)
T 2p4o_A 91 --NADSIPVVSLVKSD---GTVETLLTLPDAIFLNGITPLS-DTQYLT-ADS----------YRGAIWLIDVVQPSGSIW 153 (306)
T ss_dssp --CTTSCEEEEEECTT---SCEEEEEECTTCSCEEEEEESS-SSEEEE-EET----------TTTEEEEEETTTTEEEEE
T ss_pred --cCCcceEEEEcCCC---CeEEEEEeCCCccccCcccccC-CCcEEE-EEC----------CCCeEEEEeCCCCcEeEE
Confidence 11112344444443 221111111000 001112122 233333 111 111356665433210110
Q ss_pred ----------ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ee---EEEc-CCcCeeEEEECCCCCeEEEEe
Q 013884 191 ----------PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RP---ILEL-GSGPYNTVRWNPKGKFLCLAG 255 (434)
Q Consensus 191 ----------~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~---~~~~-~~~~~~~i~~sP~g~~l~~~~ 255 (434)
....-...+.+ +|+++.+.+. ....+.|..||... .. ...+ ....-..+++.++|++++ +.
T Consensus 154 ~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~-d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~v-a~ 229 (306)
T 2p4o_A 154 LEHPMLARSNSESVFPAANGL--KRFGNFLYVS-NTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYG-AT 229 (306)
T ss_dssp EECGGGSCSSTTCCSCSEEEE--EEETTEEEEE-ETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEE-EC
T ss_pred EECCccccccccCCCCcCCCc--CcCCCEEEEE-eCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEE-Ee
Confidence 00111233455 8999877764 55567999999763 11 1111 112345689999998654 44
Q ss_pred cCCCCCeEEEEEccCCEE--EEEeeC--CCceEEEEC---CCCCEEEEEEc
Q 013884 256 FGNLPGDMAFWDYVDGKQ--LGTTRA--ECSVTSEWS---PDGRYFMTATT 299 (434)
Q Consensus 256 ~~~~~g~i~iwd~~~~~~--i~~~~~--~~~~~~~ws---pdg~~l~tas~ 299 (434)
.+ .+.|.++|.. ++. +..+.. ..++.++|. ||++.|+.++.
T Consensus 230 ~~--~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 230 HI--YNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp BT--TCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred CC--CCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence 33 2689999975 544 323332 367789999 89988887776
No 259
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.54 E-value=0.048 Score=50.65 Aligned_cols=223 Identities=7% Similarity=-0.043 Sum_probs=118.0
Q ss_pred CCcEEEEEcCCCc--EEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCCC-ceeeeeecCCeeEEEEe
Q 013884 25 EKNVILWKTETGE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFPK-GILYRLRVPGVAAFEVS 99 (434)
Q Consensus 25 d~~v~iWd~~~g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~~-~~~~~~~~~~v~~~~~s 99 (434)
...|+..++.... ....+.... ..+ .+.|.+.+..|... ..+.|+.++...... .............+++.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~---~~~-~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd 87 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLE---DAA-AVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACD 87 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEE---EEE-EEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEE
T ss_pred cCeEEEEECCCCceEEEEEecCCC---ccE-EEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEE
Confidence 4678899987653 111111111 233 78999866555444 457999999765421 11222223455667777
Q ss_pred CCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEE
Q 013884 100 KAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNY 179 (434)
Q Consensus 100 p~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~ 179 (434)
+.++. + +|... ....|.++++.. .............-..+...|.+..|.+. .. .. ...|+.
T Consensus 88 ~~~g~-l-y~~d~---~~~~I~~~~~dG---~~~~~l~~~~~~~P~giavdp~~g~ly~t-d~--~~-------~~~I~r 149 (318)
T 3sov_A 88 WLGEK-L-YWTDS---ETNRIEVSNLDG---SLRKVLFWQELDQPRAIALDPSSGFMYWT-DW--GE-------VPKIER 149 (318)
T ss_dssp TTTTE-E-EEEET---TTTEEEEEETTS---CSCEEEECSSCSSEEEEEEEGGGTEEEEE-EC--SS-------SCEEEE
T ss_pred cCCCe-E-EEEEC---CCCEEEEEECCC---CcEEEEEeCCCCCccEEEEeCCCCEEEEE-ec--CC-------CCEEEE
Confidence 64222 2 23322 235777777654 11111111111223466677766655442 11 00 124677
Q ss_pred EeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc---CCcCeeEEEECCCCCeEEEEec
Q 013884 180 LTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGF 256 (434)
Q Consensus 180 l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~---~~~~~~~i~~sP~g~~l~~~~~ 256 (434)
++.+|.....+....-..-+.++|+|++..+.++ ....+.|..+|..+.....+ ....-..+++. +..|..+..
T Consensus 150 ~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~a-D~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~--~~~lywtd~ 226 (318)
T 3sov_A 150 AGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWA-DAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDW 226 (318)
T ss_dssp EETTSCSCEEEECSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE--TTEEEEEET
T ss_pred EEcCCCCeEEEEECCCCCccEEEEeccCCEEEEE-ECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe--CCEEEEEec
Confidence 7776653322211222345799999988888774 45567999999876443333 12223445553 445555554
Q ss_pred CCCCCeEEEEEccCCEEE
Q 013884 257 GNLPGDMAFWDYVDGKQL 274 (434)
Q Consensus 257 ~~~~g~i~iwd~~~~~~i 274 (434)
++ +.|..+|..+++.+
T Consensus 227 ~~--~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 227 ST--HSILACNKYTGEGL 242 (318)
T ss_dssp TT--TEEEEEETTTCCSC
T ss_pred CC--CeEEEEECCCCCce
Confidence 43 67888887666433
No 260
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.52 E-value=0.0049 Score=56.99 Aligned_cols=176 Identities=11% Similarity=0.067 Sum_probs=103.1
Q ss_pred EEECCCCCeEEEEEEecccccCcee--ecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEc--cCCCeEE
Q 013884 147 LNWNRGSTGLLAVAQSDVDKTNQSY--YGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYG--FMPASAT 222 (434)
Q Consensus 147 ~~ws~~G~~l~~~~~~~~d~~~~~~--~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g--~~~~~i~ 222 (434)
-.++++|.+|.++...+.......+ .....|+.++..+.....+. ..+ ...|+|+++.++++.. .....|.
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~---~~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy 132 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLD---PDP--CIYASLIGNYIYYLHYDTQTATSLY 132 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEE---CSC--EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEee---cCC--ccEEEEeCCEEEEEeecCCCCceEE
Confidence 4568999999887543221111111 12346899988887543332 223 2378889999997541 2344677
Q ss_pred EEeccceeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCc
Q 013884 223 IFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPR 302 (434)
Q Consensus 223 l~d~~~~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~r 302 (434)
..++.+.....+..... ..|+|+|+.|...+.+ ...|+..++..+.....+.+.. ...++|+|.+|+....
T Consensus 133 ~~~~dGs~~~~lt~~~~--~~~~~~g~~iy~t~~g--~~~Iy~~~l~g~~~~~l~~~~~--~~~~~P~g~~iy~t~~--- 203 (302)
T 3s25_A 133 RIRIDGEEKKKIKNHYL--FTCNTSDRYFYYNNPK--NGQLYRYDTASQSEALFYDCNC--YKPVVLDDTNVYYMDV--- 203 (302)
T ss_dssp EEETTSCCCEEEESSCC--CCSEEETTEEEEECTT--TCCEEEEETTTTEEEEEECSCE--EEEEEEETTEEEEEEG---
T ss_pred EEECCCCCeEEEeCCCc--eEeeEECCEEEEEeCC--CceEEEEECCCCCEEEEeCCCc--cceeeecCCEEEEEEc---
Confidence 77777655444433333 5678999999887653 3689999988775443344322 2345699999998765
Q ss_pred eeeCC--cEEEEeecCceeeeeecccceeeEEEcCCCCCCC
Q 013884 303 LQIDN--GIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFG 341 (434)
Q Consensus 303 l~~D~--~i~iw~~~g~~~~~~~~~~~~~~~w~p~~~~~~~ 341 (434)
++ .|..-+++|..........+ ..|.|.+..++-
T Consensus 204 ---~~~~~I~~~~ldG~~~~~Lt~~~~--~~~~~~g~~Iy~ 239 (302)
T 3s25_A 204 ---NRDNAIVHVNINNPNPVVLTEANI--EHYNVYGSLIFY 239 (302)
T ss_dssp ---GGTTEEEEECSSSCCCEECSCSCE--EEEEEETTEEEE
T ss_pred ---CCCcEEEEEECCCCCeEEEeCCCc--ceEEECCCEEEE
Confidence 33 34444556654333322222 336777666653
No 261
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.49 E-value=0.079 Score=50.88 Aligned_cols=226 Identities=5% Similarity=-0.116 Sum_probs=118.8
Q ss_pred CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCC----CceeeeeecCCeeEEEE
Q 013884 25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFP----KGILYRLRVPGVAAFEV 98 (434)
Q Consensus 25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~----~~~~~~~~~~~v~~~~~ 98 (434)
...|+..++............ .....++|.+.+..|... ..+.|+.+++.... ..............+++
T Consensus 91 ~~~I~~i~l~~~~~~~~~~~~----~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glav 166 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTSLIPNL----RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV 166 (400)
T ss_dssp TTEEEEECTTSCSCEEEECSC----SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEE
T ss_pred cceeEEEccCCcceeEecccc----CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEE
Confidence 356777777665433222221 233388999876655554 45789998876521 11111112345667777
Q ss_pred eCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEE
Q 013884 99 SKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLN 178 (434)
Q Consensus 99 sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~ 178 (434)
.+.++ .| +|... ....|.+.++.. ..........-.....++..|.+..|.+. . ... ...|+
T Consensus 167 D~~~~-~l-Y~~d~---~~~~I~~~~~~g---~~~~~l~~~~~~~P~~iavdp~~g~ly~t-d--~~~-------~~~I~ 228 (400)
T 3p5b_L 167 DWIHS-NI-YWTDS---VLGTVSVADTKG---VKRKTLFRENGSKPRAIVVDPVHGFMYWT-D--WGT-------PAKIK 228 (400)
T ss_dssp ETTTT-EE-EEEET---TTTEEEEECTTT---CSEEEEEECSSCCEEEEEEETTTTEEEEE-E--CSS-------SCCEE
T ss_pred EecCC-ce-EEEEC---CCCeEEEEeCCC---CceEEEEeCCCCCcceEEEecccCeEEEE-e--CCC-------CCEEE
Confidence 76422 22 22221 124677777654 22111111111224567777777665542 1 111 12467
Q ss_pred EEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEcC-----CcCeeEEEECCCCCeEEE
Q 013884 179 YLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG-----SGPYNTVRWNPKGKFLCL 253 (434)
Q Consensus 179 ~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~~-----~~~~~~i~~sP~g~~l~~ 253 (434)
.++.+|.....+....-...+.++++|++..+.++ ......|..+|+++.....+. ...-..|+. ++..|+.
T Consensus 229 ~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~a-D~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~lyw 305 (400)
T 3p5b_L 229 KGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFW 305 (400)
T ss_dssp EEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTEEEE
T ss_pred EEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEE-ECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCEEEE
Confidence 77777754333322222456899999998888874 455679999998765443331 112234444 4555665
Q ss_pred EecCCCCCeEEEEEccCCEEEEEe
Q 013884 254 AGFGNLPGDMAFWDYVDGKQLGTT 277 (434)
Q Consensus 254 ~~~~~~~g~i~iwd~~~~~~i~~~ 277 (434)
+..++ +.|..+|..+++.+..+
T Consensus 306 td~~~--~~V~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 306 TDIIN--EAIFSANRLTGSDVNLL 327 (400)
T ss_dssp EESSS--CSEEEEESSSCCCCEEE
T ss_pred ecCCC--CeEEEEEcCCCCceEEE
Confidence 55443 57777776666444333
No 262
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.46 E-value=0.054 Score=51.14 Aligned_cols=242 Identities=12% Similarity=0.090 Sum_probs=117.0
Q ss_pred CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecC-Ce------eEE
Q 013884 24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVP-GV------AAF 96 (434)
Q Consensus 24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~-~v------~~~ 96 (434)
.++.|..+|..+|+.+..+.... .....+.. .++.+++...++.|..+|..+.... ...... .+ ...
T Consensus 111 ~~g~l~a~d~~tG~~~W~~~~~~---~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~--W~~~~~~~~~~~~~~~~~ 184 (376)
T 3q7m_A 111 EKAQVYALNTSDGTVAWQTKVAG---EALSRPVV-SDGLVLIHTSNGQLQALNEADGAVK--WTVNLDMPSLSLRGESAP 184 (376)
T ss_dssp TTSEEEEEETTTCCEEEEEECSS---CCCSCCEE-ETTEEEEECTTSEEEEEETTTCCEE--EEEECCC-----CCCCCC
T ss_pred CCCEEEEEECCCCCEEEEEeCCC---ceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcEE--EEEeCCCCceeecCCCCc
Confidence 56889999999999987775542 11112222 2555555556789999998775432 222211 11 111
Q ss_pred EEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc-e---eE---EEECC--CCCeEEEEEEeccccc
Q 013884 97 EVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS-T---VQ---LNWNR--GSTGLLAVAQSDVDKT 167 (434)
Q Consensus 97 ~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~-~---~~---~~ws~--~G~~l~~~~~~~~d~~ 167 (434)
.... + . +|+. ...+.+..++..+ ++.+-........ . .. +.-.| .+..+++.. .
T Consensus 185 ~~~~--~-~--v~~g---~~~g~l~~~d~~t---G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~---~--- 247 (376)
T 3q7m_A 185 TTAF--G-A--AVVG---GDNGRVSAVLMEQ---GQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALA---Y--- 247 (376)
T ss_dssp EEET--T-E--EEEC---CTTTEEEEEETTT---CCEEEEEECCC-----------CCCCCCEEETTEEEEEC---T---
T ss_pred EEEC--C-E--EEEE---cCCCEEEEEECCC---CcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEe---c---
Confidence 1111 1 1 1221 2234566666654 3333222211000 0 00 00000 122222211 0
Q ss_pred CceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEcC---CcCeeEEE
Q 013884 168 NQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILELG---SGPYNTVR 243 (434)
Q Consensus 168 ~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~~---~~~~~~i~ 243 (434)
...|+.++...+... -... .+....+.. ++..+.+ +..++.+..+|.+ ++.+.... ........
T Consensus 248 ------~g~l~~~d~~tG~~~-w~~~-~~~~~~~~~--~~~~l~~--~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~ 315 (376)
T 3q7m_A 248 ------NGNLTALDLRSGQIM-WKRE-LGSVNDFIV--DGNRIYL--VDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPV 315 (376)
T ss_dssp ------TSCEEEEETTTCCEE-EEEC-CCCEEEEEE--ETTEEEE--EETTCCEEEEETTTCCEEEEECTTTTSCCCCCE
T ss_pred ------CcEEEEEECCCCcEE-eecc-CCCCCCceE--ECCEEEE--EcCCCeEEEEECCCCcEEEeecccCCCcccCCE
Confidence 113455554332111 1111 122333433 3455554 3446789999985 44444332 22222222
Q ss_pred ECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceE-EEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884 244 WNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVT-SEWSPDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 244 ~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~-~~wspdg~~l~tas~~~rl~~D~~i~iw~ 313 (434)
. .+..|++++ .+|.|+++|.++++.+...... .+.. ... .+..|++++. |+.+..|+
T Consensus 316 ~--~~~~l~v~~---~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~------~G~l~~~~ 375 (376)
T 3q7m_A 316 L--YNGNLVVGD---SEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAK------DGTVYSIT 375 (376)
T ss_dssp E--ETTEEEEEC---TTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBT------TSCEEEEE
T ss_pred E--ECCEEEEEe---CCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeC------CCEEEEEe
Confidence 2 245676676 4579999999999888776642 2211 222 2456777777 88888876
No 263
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.41 E-value=0.0055 Score=54.42 Aligned_cols=157 Identities=10% Similarity=0.071 Sum_probs=96.4
Q ss_pred cceeEEEEeeCCCc-eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEcCCcCeeEEEECCCCCe
Q 013884 173 GESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILELGSGPYNTVRWNPKGKF 250 (434)
Q Consensus 173 g~~~l~~l~~~~~~-~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~~~~~~~~i~~sP~g~~ 250 (434)
|...|..++...+. ...+++. .........++++++.++ ...++.+.+||.+ .+.+.++.... ......++|+.
T Consensus 41 g~S~v~~vD~~tgkv~~~~~l~--~~~fgeGi~~~~~~ly~l-tw~~~~v~v~D~~tl~~~~ti~~~~-~Gwglt~dg~~ 116 (243)
T 3mbr_X 41 GRSSVRKVDLETGRILQRAEVP--PPYFGAGIVAWRDRLIQL-TWRNHEGFVYDLATLTPRARFRYPG-EGWALTSDDSH 116 (243)
T ss_dssp TSCEEEEEETTTCCEEEEEECC--TTCCEEEEEEETTEEEEE-ESSSSEEEEEETTTTEEEEEEECSS-CCCEEEECSSC
T ss_pred CCceEEEEECCCCCEEEEEeCC--CCcceeEEEEeCCEEEEE-EeeCCEEEEEECCcCcEEEEEeCCC-CceEEeeCCCE
Confidence 33456666664432 2333443 233333344457777775 4567899999986 45555553211 22344467887
Q ss_pred EEEEecCCCCCeEEEEEccCCEEEEEeeC-------CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee
Q 013884 251 LCLAGFGNLPGDMAFWDYVDGKQLGTTRA-------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK 322 (434)
Q Consensus 251 l~~~~~~~~~g~i~iwd~~~~~~i~~~~~-------~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~ 322 (434)
|.++.. .+.|.++|.++.+.+..+.- .....++|. +|+.++..-. ++.|.+-|. +|+.+...
T Consensus 117 L~vSdg---s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~------s~~I~vIDp~tG~V~~~i 186 (243)
T 3mbr_X 117 LYMSDG---TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWL------TSRIARIDPASGKVVAWI 186 (243)
T ss_dssp EEEECS---SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT------TTEEEEECTTTCBEEEEE
T ss_pred EEEECC---CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECC------CCeEEEEECCCCCEEEEE
Confidence 777652 36999999999987766643 133457877 7775544334 667777776 55554443
Q ss_pred ec---------------ccceeeEEEcCCCCCCCCc
Q 013884 323 MF---------------DKLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 323 ~~---------------~~~~~~~w~p~~~~~~~~~ 343 (434)
.. +.+..++|.|....+|-.+
T Consensus 187 dl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 187 DLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp ECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred ECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 32 2567899999988888876
No 264
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.40 E-value=0.1 Score=50.04 Aligned_cols=235 Identities=10% Similarity=-0.088 Sum_probs=127.7
Q ss_pred cEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee-eeec
Q 013884 62 AVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR-RSFF 140 (434)
Q Consensus 62 ~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~-~~~~ 140 (434)
.+|+....+.|+..++..... .........+..++|++..+ .| +|.... ...|..+++........... ....
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~~-~~~~~~~~~~~~l~~d~~~~-~l-ywsD~~---~~~I~~~~~~g~~~~~~~~~~~~~~ 157 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSEY-TSLIPNLRNVVALDTEVASN-RI-YWSDLS---QRMICSTQLDRAHGVSSYDTVISRD 157 (400)
T ss_dssp CEEEEEETTEEEEECTTSCSC-EEEECSCSCEEEEEEETTTT-EE-EEEETT---TTEEEEEEC------CCCEEEECSS
T ss_pred ceeEEeccceeEEEccCCcce-eEeccccCcceEEeeeeccC-ce-EEEecC---CCeEEEEEcccCCCCCcceEEEeCC
Confidence 466667778999999876432 11222245678889998633 22 343322 23566666543100001111 1101
Q ss_pred ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCe
Q 013884 141 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPAS 220 (434)
Q Consensus 141 ~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~ 220 (434)
-.....++..+.+..|.+. +. +...|..++..+.....+....-.....++..|.+..+.+.-....+.
T Consensus 158 ~~~p~glavD~~~~~lY~~-d~----------~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~ 226 (400)
T 3p5b_L 158 IQAPDGLAVDWIHSNIYWT-DS----------VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK 226 (400)
T ss_dssp CSCEEEEEEETTTTEEEEE-ET----------TTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCC
T ss_pred CCCcccEEEEecCCceEEE-EC----------CCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCE
Confidence 1122345555545554442 11 112356666666533222222234568999999777776643233468
Q ss_pred EEEEeccceeEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEeeC--CCceEEEECCCCCE
Q 013884 221 ATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTRA--ECSVTSEWSPDGRY 293 (434)
Q Consensus 221 i~l~d~~~~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~~--~~~~~~~wspdg~~ 293 (434)
|..+++.+.....+ .-..-+.|+++|++..|..+..++ +.|+.+|++.. +.+..... .....++. ++..
T Consensus 227 I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~--~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~ 302 (400)
T 3p5b_L 227 IKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL--HSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDK 302 (400)
T ss_dssp EEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTE
T ss_pred EEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCC--CEEEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCE
Confidence 99999887554444 224568899999999888887544 68999998754 23322211 23344555 4555
Q ss_pred EEEEEcCCceeeCCcEEEEe-ecCceeeee
Q 013884 294 FMTATTAPRLQIDNGIKIFH-HNGSLFFKK 322 (434)
Q Consensus 294 l~tas~~~rl~~D~~i~iw~-~~g~~~~~~ 322 (434)
|+.+... .+.|..++ .+|+.+...
T Consensus 303 lywtd~~-----~~~V~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 303 VFWTDII-----NEAIFSANRLTGSDVNLL 327 (400)
T ss_dssp EEEEESS-----SCSEEEEESSSCCCCEEE
T ss_pred EEEecCC-----CCeEEEEEcCCCCceEEE
Confidence 5555442 57788887 677655443
No 265
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.39 E-value=0.049 Score=52.94 Aligned_cols=158 Identities=8% Similarity=0.135 Sum_probs=87.2
Q ss_pred CeeEEEEeC-CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCce
Q 013884 92 GVAAFEVSK-APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQS 170 (434)
Q Consensus 92 ~v~~~~~sp-~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~ 170 (434)
....++++| +.+. +|+.+.. ..|+.+++.. . .+............+.|+++|+.|++.-.. . ....
T Consensus 138 ~P~~lavdp~~~g~---Lyv~d~~---~~I~~id~~~---~-~v~~~~~~~~~P~~ia~d~~G~~lyvad~~-~-~~~~- 204 (430)
T 3tc9_A 138 GAVWLSFDPKNHNH---LYLVGEQ---HPTRLIDFEK---E-YVSTVYSGLSKVRTICWTHEADSMIITNDQ-N-NNDR- 204 (430)
T ss_dssp CCCEEEEETTEEEE---EEEEEBT---EEEEEEETTT---T-EEEEEECCCSCEEEEEECTTSSEEEEEECC-S-CTTS-
T ss_pred CCCEEEECCCCCCe---EEEEeCC---CcEEEEECCC---C-EEEEEecCCCCcceEEEeCCCCEEEEEeCC-C-Cccc-
Confidence 456778887 3222 2222221 6777777754 2 222222233456789999999976664211 1 0110
Q ss_pred eecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeE---EEcCC-cCeeEEEECC
Q 013884 171 YYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI---LELGS-GPYNTVRWNP 246 (434)
Q Consensus 171 ~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~---~~~~~-~~~~~i~~sP 246 (434)
..++.+...+.......+......+.++++|++..+.+ +....++|..||..+..+ ..... ..-+.|+|+|
T Consensus 205 ----~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv-~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~p 279 (430)
T 3tc9_A 205 ----PNNYILTRESGFKVITELTKGQNCNGAETHPINGELYF-NSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHP 279 (430)
T ss_dssp ----EEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEE-EETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECT
T ss_pred ----ceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEE-EECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcC
Confidence 12333333333221111212234578999994334443 345567999999875543 22222 2356899999
Q ss_pred CCCeEEEEecCCCCCeEEEEEcc
Q 013884 247 KGKFLCLAGFGNLPGDMAFWDYV 269 (434)
Q Consensus 247 ~g~~l~~~~~~~~~g~i~iwd~~ 269 (434)
+|++|.++...+ +.|..+|.+
T Consensus 280 dG~~lyv~d~~~--~~I~~~~~d 300 (430)
T 3tc9_A 280 SGNYAYIVVVNQ--HYILRSDYD 300 (430)
T ss_dssp TSSEEEEEETTT--TEEEEEEEE
T ss_pred CCCEEEEEECCC--CEEEEEeCC
Confidence 999777776543 689998765
No 266
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.38 E-value=0.19 Score=52.74 Aligned_cols=230 Identities=9% Similarity=-0.105 Sum_probs=123.9
Q ss_pred EEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC-CCceeeeeecc
Q 013884 63 VACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ-SQPLARRSFFR 141 (434)
Q Consensus 63 ~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~-~~~i~~~~~~~ 141 (434)
+|+......|+..++..... .........+..+++.+..+ .| +|.... ...|+.+++..... ...........
T Consensus 397 ~Ll~an~~~Ir~i~l~~~~~-~~l~~~~~~~~gl~~d~~~~-~l-Y~sD~~---~~~I~~~~l~g~~~~~~~~~vi~~~l 470 (791)
T 3m0c_C 397 YLFFTNRHEVRKMTLDRSEY-TSLIPNLRNVVALDTEVASN-RI-YWSDLS---QRMICSTQLDRAHGVSSYDTVISRDI 470 (791)
T ss_dssp EEEEECBSSEEEECTTSCCC-EEEECSCSSEEEEEEETTTT-EE-EEEETT---TTEEEEEEC--------CEEEECSSC
T ss_pred ccccccccceeEeeccCCcc-eeeecCCCceEEEeecccCC-ee-EEeecc---ceeEEEEeccCCCCCcceeEEEecCC
Confidence 55555556788887765332 12222345677788887532 22 333322 24566666643100 01111111011
Q ss_pred cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 013884 142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASA 221 (434)
Q Consensus 142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i 221 (434)
.....|+....+..|.+. . . +...|+.++..|.....+....-.....|++.|.+..|.+.--...+.|
T Consensus 471 ~~P~GLAvD~~~~~LY~t-D----~------~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I 539 (791)
T 3m0c_C 471 QAPDGLAVDWIHSNIYWT-D----S------VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKI 539 (791)
T ss_dssp SCCCEEEEETTTTEEEEE-E----T------TTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred CCcceeeeeecCCcEEEE-e----c------CCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeE
Confidence 122345555566665442 1 1 1224666676665433332222345789999998777766432333689
Q ss_pred EEEeccceeEEEcC---CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC----CCceEEEECCCCCEE
Q 013884 222 TIFNKKCRPILELG---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA----ECSVTSEWSPDGRYF 294 (434)
Q Consensus 222 ~l~d~~~~~~~~~~---~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~----~~~~~~~wspdg~~l 294 (434)
...++.+.....+. -..-+.|++.|.+..|.++..++ +.|+..|++.......+.. .....|+. ++.+|
T Consensus 540 ~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~--~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~l 615 (791)
T 3m0c_C 540 KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL--HSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKV 615 (791)
T ss_dssp EEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEE
T ss_pred EEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCC--CcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEE
Confidence 99999876655442 24568899999988888887544 6899999875432222222 13334554 55577
Q ss_pred EEEEcCCceeeCCcEEEEe-ecCce
Q 013884 295 MTATTAPRLQIDNGIKIFH-HNGSL 318 (434)
Q Consensus 295 ~tas~~~rl~~D~~i~iw~-~~g~~ 318 (434)
+.+... .+.|...+ ++|+.
T Consensus 616 YwtD~~-----~~~I~~~dk~tG~~ 635 (791)
T 3m0c_C 616 FWTDII-----NEAIFSANRLTGSD 635 (791)
T ss_dssp EEEETT-----TTEEEEEETTTCCC
T ss_pred EEEECC-----CCEEEEEeCCCCcc
Confidence 766652 45566665 45643
No 267
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.37 E-value=0.15 Score=51.41 Aligned_cols=79 Identities=16% Similarity=0.125 Sum_probs=48.1
Q ss_pred CCeEEEEecc-ceeEEEcC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC-c--eEEEECCCCC
Q 013884 218 PASATIFNKK-CRPILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC-S--VTSEWSPDGR 292 (434)
Q Consensus 218 ~~~i~l~d~~-~~~~~~~~-~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~-~--~~~~wspdg~ 292 (434)
.+.+..+|.+ ++.+-++. ..+.........|..+++++ .+|.|+.+|.++++.+..+.... + .-+.+..||+
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~---~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~ 519 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYAT---LDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGK 519 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEEC---TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred CCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEc---CCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCE
Confidence 3578888875 44444442 22222222233456666665 56899999999999998887542 1 2255667777
Q ss_pred EEEEEEc
Q 013884 293 YFMTATT 299 (434)
Q Consensus 293 ~l~tas~ 299 (434)
.++....
T Consensus 520 ~yv~~~~ 526 (571)
T 2ad6_A 520 QYIGSMY 526 (571)
T ss_dssp EEEEEEE
T ss_pred EEEEEEC
Confidence 5554443
No 268
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.36 E-value=0.035 Score=57.12 Aligned_cols=283 Identities=11% Similarity=0.038 Sum_probs=130.9
Q ss_pred eEEecC-CCcEEEEEecCCCC----C--CCcEEEEEcCCCcE--EEEEeecCcCCCCC-CeeeecCCCcEEEEec--CCe
Q 013884 4 LLTCLR-VGLIIQTFQKSSTP----Q--EKNVILWKTETGEA--VYQLFQKNMTKTTW-PSIRFSSDEAVACRMA--TNE 71 (434)
Q Consensus 4 ~l~fSP-~g~~L~t~~~~~~~----~--d~~v~iWd~~~g~~--~~~~~~~~~~~~~~-~~~~~S~d~~~la~~~--~~~ 71 (434)
++++.| +|+.++..+..... . ...+.+||..+++. +....... ..+ ....+..|+++++.++ ++.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~---~~~~~~~~~~~~g~lyv~GG~~~~~ 266 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKH---DMFCPGISMDGNGQIVVTGGNDAKK 266 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSC---CCSSCEEEECTTSCEEEECSSSTTC
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCC---CCccccccCCCCCCEEEeCCCCCCc
Confidence 567788 88888776632110 1 12688999988863 22222211 222 1367789999999885 358
Q ss_pred EEEEeCCCCCCceeeeeecCC-eeEEEEeCCCCCeEEEEe-cCCCCCCceEEEEEcCCCCCCCceee-----eeecccce
Q 013884 72 IQFFDTTDFPKGILYRLRVPG-VAAFEVSKAPGSHVAVFV-PESKGSPASVQIYACGKDLQSQPLAR-----RSFFRCST 144 (434)
Q Consensus 72 i~v~~~~~~~~~~~~~~~~~~-v~~~~~sp~~~~~ia~~~-~~~~~~~~~v~i~~~~~~~~~~~i~~-----~~~~~~~~ 144 (434)
+.+||.....-.....+.... -......++ +.++++-- .+.......+.+|+..+. .-... ........
T Consensus 267 v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~d-g~iyv~GG~~~~~~~~~~~e~yd~~t~---~W~~~~~~~~~p~~~~~~ 342 (656)
T 1k3i_A 267 TSLYDSSSDSWIPGPDMQVARGYQSSATMSD-GRVFTIGGSWSGGVFEKNGEVYSPSSK---TWTSLPNAKVNPMLTADK 342 (656)
T ss_dssp EEEEEGGGTEEEECCCCSSCCSSCEEEECTT-SCEEEECCCCCSSSCCCCEEEEETTTT---EEEEETTSCSGGGCCCCT
T ss_pred eEEecCcCCceeECCCCCccccccceEEecC-CeEEEEeCcccCCcccccceEeCCCCC---cceeCCCccccccccccc
Confidence 999997653211111111111 122334444 23222100 011112356888887652 11000 00000000
Q ss_pred eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC----------CCCCeEEEEECcCCCEEEEEE
Q 013884 145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR----------KEGPVHDVQWSYSGSEFAVVY 214 (434)
Q Consensus 145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~----------~~~~i~~~~wspdg~~~av~~ 214 (434)
...+..++.. .++.. .+...........++.++.....- ..+.. ....-.++.+...+..+.++
T Consensus 343 -~~~~~~~~~i-yv~Gg--~~g~~~~~~~~~~v~~yd~~~~~w-~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~- 416 (656)
T 1k3i_A 343 -QGLYRSDNHA-WLFGW--KKGSVFQAGPSTAMNWYYTSGSGD-VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTF- 416 (656)
T ss_dssp -TGGGTTTCSC-CEEEC--GGGCEEECCSSSEEEEEECSTTCE-EEEEEECEETTEECCCCBTCEEEEEETTTTEEEEE-
T ss_pred -cceeecCCce-EEEEC--CCCcEEEecCccceeeeecCCcce-eecCCccccccccCCCCCCCceEeccCCCCeEEEE-
Confidence 0011122332 22211 111100000112233333322210 00100 01122445554434455554
Q ss_pred ccCC--------C---eEEEEeccceeEEEc-----CCcC-eeEEEECCCCCeEEEEecCC--------CCCeEEEEEcc
Q 013884 215 GFMP--------A---SATIFNKKCRPILEL-----GSGP-YNTVRWNPKGKFLCLAGFGN--------LPGDMAFWDYV 269 (434)
Q Consensus 215 g~~~--------~---~i~l~d~~~~~~~~~-----~~~~-~~~i~~sP~g~~l~~~~~~~--------~~g~i~iwd~~ 269 (434)
|..+ . .+.+||.....-... +... ..++...|+|+++++||.+. ...++++||..
T Consensus 417 GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~ 496 (656)
T 1k3i_A 417 GGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPE 496 (656)
T ss_dssp CCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGG
T ss_pred eCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCC
Confidence 4422 1 577888765443322 2222 23567789999999998542 12579999998
Q ss_pred CCEEEEE--eeCC--CceEEEECCCCCEEEEEEc
Q 013884 270 DGKQLGT--TRAE--CSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 270 ~~~~i~~--~~~~--~~~~~~wspdg~~l~tas~ 299 (434)
+.+-... ...+ ........|||+.++.++.
T Consensus 497 t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 497 QDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp GTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 7753322 2222 2233567899999999885
No 269
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.33 E-value=0.13 Score=52.97 Aligned_cols=57 Identities=16% Similarity=0.248 Sum_probs=43.4
Q ss_pred CeEEEEEccCCEEEEEeeCCCc-eEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeee
Q 013884 261 GDMAFWDYVDGKQLGTTRAECS-VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKM 323 (434)
Q Consensus 261 g~i~iwd~~~~~~i~~~~~~~~-~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~~ 323 (434)
|.|.-||..+++.+........ ........|..+++++. |+.+++||. +|+++.+..
T Consensus 438 g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~------dg~l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTA------AGQMHAYSADKGEALWQFE 496 (668)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT------TSEEEEEETTTCCEEEEEE
T ss_pred ceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECC------cccchhhhhhcChhheEec
Confidence 7899999999998877765422 22455667888888877 999999997 577776653
No 270
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.32 E-value=0.1 Score=48.39 Aligned_cols=231 Identities=8% Similarity=-0.047 Sum_probs=124.7
Q ss_pred EEEEecCCeEEEEeCCCCCCceeeee-ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc
Q 013884 63 VACRMATNEIQFFDTTDFPKGILYRL-RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR 141 (434)
Q Consensus 63 ~la~~~~~~i~v~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~ 141 (434)
+|+.+..+.|+.+++..........+ .......+.|.+.. ..| +|+.-. ...|..+++........+....+
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~-~~l-yw~D~~---~~~I~r~~~~g~~~~~~~~~~~l-- 78 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSH-GLI-YWSDVS---EEAIKRTEFNKTESVQNVVVSGL-- 78 (318)
T ss_dssp EEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGG-TEE-EEEETT---TTEEEEEETTSSSCCCEEEEECC--
T ss_pred EEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCC-CEE-EEEECC---CCcEEEEEccCCCceEEEEcCCC--
Confidence 45556667899999876431111111 23345678888753 222 443322 24666666654110011111111
Q ss_pred cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 013884 142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASA 221 (434)
Q Consensus 142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i 221 (434)
.....+++.+.+..|.+. .. +...|..++..+.....+....-.....+++.|.+..+.+.-....+.|
T Consensus 79 ~~p~glavd~~~g~ly~~-d~----------~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I 147 (318)
T 3sov_A 79 LSPDGLACDWLGEKLYWT-DS----------ETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKI 147 (318)
T ss_dssp SCCCEEEEETTTTEEEEE-ET----------TTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEE
T ss_pred CCccEEEEEcCCCeEEEE-EC----------CCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEE
Confidence 122345566555555442 11 1123566666664332222122345689999998777665332235689
Q ss_pred EEEeccceeEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEeeCCCceEEEECCCCCEEEE
Q 013884 222 TIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTRAECSVTSEWSPDGRYFMT 296 (434)
Q Consensus 222 ~l~d~~~~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~~~~~~~~~wspdg~~l~t 296 (434)
..+++++.....+ .-..-+.|+|+|++..|..+..++ +.|+.+|.+.. +.+.......+..++.. +..|+.
T Consensus 148 ~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~--~~I~~~d~dG~~~~~~~~~~~~~P~glav~--~~~lyw 223 (318)
T 3sov_A 148 ERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKL--NFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYW 223 (318)
T ss_dssp EEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTSCSCEEEECSCCSCEEEEEEE--TTEEEE
T ss_pred EEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCC--CEEEEEcCCCCceEEEecCCCCCceEEEEe--CCEEEE
Confidence 9998876544433 223458899999999888887544 79999998743 33322112244445653 345555
Q ss_pred EEcCCceeeCCcEEEEee-cCceee
Q 013884 297 ATTAPRLQIDNGIKIFHH-NGSLFF 320 (434)
Q Consensus 297 as~~~rl~~D~~i~iw~~-~g~~~~ 320 (434)
+... .+.|..++. +|+.+.
T Consensus 224 td~~-----~~~V~~~~~~~G~~~~ 243 (318)
T 3sov_A 224 TDWS-----THSILACNKYTGEGLR 243 (318)
T ss_dssp EETT-----TTEEEEEETTTCCSCE
T ss_pred EecC-----CCeEEEEECCCCCceE
Confidence 4442 567777776 676543
No 271
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.31 E-value=0.1 Score=48.21 Aligned_cols=232 Identities=9% Similarity=-0.082 Sum_probs=124.4
Q ss_pred EEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee-eeecc
Q 013884 63 VACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR-RSFFR 141 (434)
Q Consensus 63 ~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~-~~~~~ 141 (434)
+|+.+..++|+..++....... ..-.......++|++..+ .+ +|.... .+.|..+++........... ....-
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~-~~~~~~~p~g~~~d~~~~-~l-y~~D~~---~~~I~~~~~~g~~~~~~~~~~~~~~~ 76 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTS-LIPNLRNVVALDTEVASN-RI-YWSDLS---QRMICSTQLDRAHGVSSYDTVISRDI 76 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEE-EECSCSSEEEEEEETTTT-EE-EEEETT---TTEEEEEEC--------CEEEECSSC
T ss_pred EEEEECCCeEEEEECCCcceEe-hhcCCCceEEEEEEeCCC-EE-EEEECC---CCcEEEEECCCCCCCcccEEEEeCCC
Confidence 5666667789999987643211 111245677889988633 22 333321 34666666643100011111 11000
Q ss_pred cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 013884 142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASA 221 (434)
Q Consensus 142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i 221 (434)
.....+++.+.+..|.+. .. +...|..++..+.....+.-..-....+++..|.+..+.+......+.|
T Consensus 77 ~~p~glavd~~~~~ly~~-d~----------~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I 145 (316)
T 1ijq_A 77 QAPDGLAVDWIHSNIYWT-DS----------VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKI 145 (316)
T ss_dssp SCCCEEEEETTTTEEEEE-ET----------TTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred CCcCEEEEeecCCeEEEE-EC----------CCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeE
Confidence 122355666555555442 11 1123555665554322221112345689999997777665332223689
Q ss_pred EEEeccceeEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEee--CCCceEEEECCCCCEE
Q 013884 222 TIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTR--AECSVTSEWSPDGRYF 294 (434)
Q Consensus 222 ~l~d~~~~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~--~~~~~~~~wspdg~~l 294 (434)
..+++.+.....+ .-..-+.|+|+|++..|..+...+ +.|..+|.+.. +.+.... ......+++. +.+|
T Consensus 146 ~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~--~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~--~~~l 221 (316)
T 1ijq_A 146 KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL--HSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKV 221 (316)
T ss_dssp EEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEE
T ss_pred EEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCC--CeEEEEecCCCceEEEeecCCccCCcEEEEEE--CCEE
Confidence 9998876554433 234467899999998888887544 79999998743 3333221 1234456663 3455
Q ss_pred EEEEcCCceeeCCcEEEEee-cCceee
Q 013884 295 MTATTAPRLQIDNGIKIFHH-NGSLFF 320 (434)
Q Consensus 295 ~tas~~~rl~~D~~i~iw~~-~g~~~~ 320 (434)
+.+... .+.|..++. +|+.+.
T Consensus 222 y~~d~~-----~~~V~~~~~~~g~~~~ 243 (316)
T 1ijq_A 222 FWTDII-----NEAIFSANRLTGSDVN 243 (316)
T ss_dssp EEEETT-----TTEEEEEETTTCCCCE
T ss_pred EEEECC-----CCeEEEEeCCCCcceE
Confidence 554442 667777774 676443
No 272
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.26 E-value=0.19 Score=52.73 Aligned_cols=221 Identities=5% Similarity=-0.105 Sum_probs=115.6
Q ss_pred CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCC----CceeeeeecCCeeEEEEe
Q 013884 26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFP----KGILYRLRVPGVAAFEVS 99 (434)
Q Consensus 26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~----~~~~~~~~~~~v~~~~~s 99 (434)
..|+..++..++........ .....|+|.+.+..|... ..+.|+.+++.... ........+.....+++.
T Consensus 404 ~~Ir~i~l~~~~~~~l~~~~----~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD 479 (791)
T 3m0c_C 404 HEVRKMTLDRSEYTSLIPNL----RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 479 (791)
T ss_dssp SSEEEECTTSCCCEEEECSC----SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred cceeEeeccCCcceeeecCC----CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeee
Confidence 55666676655432222211 223378898865555444 34688888876421 111111123445677777
Q ss_pred CCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecc-eeEE
Q 013884 100 KAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGE-SKLN 178 (434)
Q Consensus 100 p~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~-~~l~ 178 (434)
+.++ .| +|... ....|.+.++.. ..........-.....|+..|.+..|.+. .. |. ..|+
T Consensus 480 ~~~~-~L-Y~tD~---~~~~I~v~~ldG---~~~~~l~~~~l~~P~gIaVDp~~g~LYwt-D~----------g~~~~I~ 540 (791)
T 3m0c_C 480 WIHS-NI-YWTDS---VLGTVSVADTKG---VKRKTLFRENGSKPRAIVVDPVHGFMYWT-DW----------GTPAKIK 540 (791)
T ss_dssp TTTT-EE-EEEET---TTTEEEEEETTS---SSEEEEEECTTCCEEEEEEETTTTEEEEE-EC----------SSSCEEE
T ss_pred ecCC-cE-EEEec---CCCeEEEEeCCC---CeEEEEEeCCCCCcceEEEecCCCCEEEe-cC----------CCCCeEE
Confidence 6532 22 33322 234778777754 22111111111234567777776665542 11 11 2467
Q ss_pred EEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEcC---Cc--CeeEEEECCCCCeEEE
Q 013884 179 YLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG---SG--PYNTVRWNPKGKFLCL 253 (434)
Q Consensus 179 ~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~~---~~--~~~~i~~sP~g~~l~~ 253 (434)
.+++.|.....+....-.....|++.+.+..|.++ ......|..+|+.+.....+. .. .-..|++ ++.+|++
T Consensus 541 ~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwa-D~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYw 617 (791)
T 3m0c_C 541 KGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFW 617 (791)
T ss_dssp EEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEE
T ss_pred EEecCCCceEEEEeCCCCCceEEEEecCCCeEEEE-eCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEE
Confidence 77777754333322223467899999888888774 445669999998765544431 11 1223443 4556666
Q ss_pred EecCCCCCeEEEEEccCCEEE
Q 013884 254 AGFGNLPGDMAFWDYVDGKQL 274 (434)
Q Consensus 254 ~~~~~~~g~i~iwd~~~~~~i 274 (434)
+...+ +.|...|..+++.+
T Consensus 618 tD~~~--~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 618 TDIIN--EAIFSANRLTGSDV 636 (791)
T ss_dssp EETTT--TEEEEEETTTCCCC
T ss_pred EECCC--CEEEEEeCCCCcce
Confidence 66543 67777776666433
No 273
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.26 E-value=0.099 Score=50.79 Aligned_cols=201 Identities=7% Similarity=0.126 Sum_probs=106.6
Q ss_pred CeeEEEEeCC-CCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCce
Q 013884 92 GVAAFEVSKA-PGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQS 170 (434)
Q Consensus 92 ~v~~~~~sp~-~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~ 170 (434)
....++|+|+ .+..| |+.+.. ..|+.++... +. +............+.++++|+ |++ +.... ...
T Consensus 140 ~P~gvavd~~s~~g~L--yv~D~~---~~I~~id~~~---g~-v~~~~~~~~~P~giavd~dG~-lyV-ad~~~-~~~-- 205 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDL--YWVGQR---DAFRHVDFVN---QY-VDIKTTNIGQCADVNFTLNGD-MVV-VDDQS-SDT-- 205 (433)
T ss_dssp CCCEEEECTTTTTCEE--EEECBT---SCEEEEETTT---TE-EEEECCCCSCEEEEEECTTCC-EEE-EECCS-CTT--
T ss_pred CCceEEEccccCCCEE--EEEeCC---CCEEEEECCC---CE-EEEeecCCCCccEEEECCCCC-EEE-EcCCC-Ccc--
Confidence 4567888884 22222 222222 5777777754 22 222221223456899999999 544 32211 000
Q ss_pred eecceeEEEEeeCCCceeeeecCCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEecc-cee---EEEcCC-cCeeEEEE
Q 013884 171 YYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKK-CRP---ILELGS-GPYNTVRW 244 (434)
Q Consensus 171 ~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wsp-dg~~~av~~g~~~~~i~l~d~~-~~~---~~~~~~-~~~~~i~~ 244 (434)
...++.+...+.......+..-.....++++| +|..++ +....+.|..+|.. +.. +..... .....|+|
T Consensus 206 ---~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv--~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~ 280 (433)
T 4hw6_A 206 ---NTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYY--TRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVW 280 (433)
T ss_dssp ---SEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEE--CBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEE
T ss_pred ---cceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEE--EECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEE
Confidence 11233333222221111111123456789999 555443 34456689999986 332 222222 22346999
Q ss_pred CCCCCeEEEEecCCCCCeEEEEEcc--CCE-----EEEEe-e-------------CCCceEEEE---------CCCCCEE
Q 013884 245 NPKGKFLCLAGFGNLPGDMAFWDYV--DGK-----QLGTT-R-------------AECSVTSEW---------SPDGRYF 294 (434)
Q Consensus 245 sP~g~~l~~~~~~~~~g~i~iwd~~--~~~-----~i~~~-~-------------~~~~~~~~w---------spdg~~l 294 (434)
+|+|++|.++..++ +.|..+|.+ +++ .+.-. . -..+..+++ .++|..+
T Consensus 281 dpdG~~LYvad~~~--~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~ly 358 (433)
T 4hw6_A 281 HPTGDWAYIIYNGK--HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFY 358 (433)
T ss_dssp CTTSSEEEEEETTT--TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEE
T ss_pred eCCCCEEEEEeCCC--CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEE
Confidence 99999888777544 689998865 331 11111 0 012445888 6777665
Q ss_pred EEEEcCCceeeCCcEEEEeecCcee
Q 013884 295 MTATTAPRLQIDNGIKIFHHNGSLF 319 (434)
Q Consensus 295 ~tas~~~rl~~D~~i~iw~~~g~~~ 319 (434)
++-+. .+.|+.++.+|.+.
T Consensus 359 vaD~~------n~~I~~~~~~G~v~ 377 (433)
T 4hw6_A 359 FCDRD------SHTVRVLTPEGRVT 377 (433)
T ss_dssp EEETT------TTEEEEECTTSEEE
T ss_pred EEECC------CCEEEEECCCCCEE
Confidence 55444 67788888777543
No 274
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.24 E-value=0.093 Score=46.43 Aligned_cols=117 Identities=15% Similarity=0.158 Sum_probs=66.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTD 79 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~ 79 (434)
...|.|++ +....+.+.+ .+..|+++|+.+|+.+.+..... ... ....+.++..|..+ .++.+.+||..+
T Consensus 23 tqGL~~~~-~~LyestG~~---g~S~v~~vD~~tgkv~~~~~l~~---~~f-geGi~~~~~~ly~ltw~~~~v~v~D~~t 94 (243)
T 3mbr_X 23 TEGLFYLR-GHLYESTGET---GRSSVRKVDLETGRILQRAEVPP---PYF-GAGIVAWRDRLIQLTWRNHEGFVYDLAT 94 (243)
T ss_dssp EEEEEEET-TEEEEEECCT---TSCEEEEEETTTCCEEEEEECCT---TCC-EEEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred cccEEEEC-CEEEEECCCC---CCceEEEEECCCCCEEEEEeCCC---Ccc-eeEEEEeCCEEEEEEeeCCEEEEEECCc
Confidence 35688987 5555544421 24689999999999998876542 111 22223334444333 578999999988
Q ss_pred CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee
Q 013884 80 FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS 138 (434)
Q Consensus 80 ~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~ 138 (434)
+... .++...+ ....++++++..+ +.+ + .+.|.++|..+ .+.+....
T Consensus 95 l~~~--~ti~~~~-~Gwglt~dg~~L~---vSd--g-s~~l~~iDp~t---~~~~~~I~ 141 (243)
T 3mbr_X 95 LTPR--ARFRYPG-EGWALTSDDSHLY---MSD--G-TAVIRKLDPDT---LQQVGSIK 141 (243)
T ss_dssp TEEE--EEEECSS-CCCEEEECSSCEE---EEC--S-SSEEEEECTTT---CCEEEEEE
T ss_pred CcEE--EEEeCCC-CceEEeeCCCEEE---EEC--C-CCeEEEEeCCC---CeEEEEEE
Confidence 6543 3344332 2234445533322 222 2 45788888776 44554443
No 275
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.23 E-value=0.13 Score=47.55 Aligned_cols=267 Identities=15% Similarity=0.155 Sum_probs=149.8
Q ss_pred CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeec
Q 013884 11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRV 90 (434)
Q Consensus 11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~ 90 (434)
.+|++.-+. ..++.+|.|-|+.++..+.+..-.. + +.--.|..+.+|.-.+.+|+|||+....+.....+ .
T Consensus 36 DkyicVrE~--~~~~~~VvIiDl~n~~~~~Rrpi~A---d---sAIMnP~~~ViALrag~~LQiFnletK~klks~~~-~ 106 (365)
T 2xzh_A 36 DKFICIREK--VGEQAQVVIIDMNDPSNPIRRPISA---D---SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-T 106 (365)
T ss_dssp TTEEEEEEE--ETTEEEEEEEETTSTTSCEEEECCC---S---EEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC-S
T ss_pred CceEEEEec--CCCCCEEEEEECCCCCCcccccccc---c---eeeeCCCccEEEEecCCeEEEechHHhhhhcceec-C
Confidence 466666552 1233578899998876554433221 1 33457888888877788999999988654333333 3
Q ss_pred CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee--ee--eecccceeEEEECCCCCeEEEEEEecccc
Q 013884 91 PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA--RR--SFFRCSTVQLNWNRGSTGLLAVAQSDVDK 166 (434)
Q Consensus 91 ~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~--~~--~~~~~~~~~~~ws~~G~~l~~~~~~~~d~ 166 (434)
+.|..-.|-.. ..+++.... .|.-|++... ..|.. .+ ++....+....-+++.++++++.-...+.
T Consensus 107 e~VvfWkWis~--~~L~lVT~t------aVyHWs~~~~--s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~ 176 (365)
T 2xzh_A 107 DDVTFWKWISL--NTVALVTDN------AVYHWSMEGE--SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQN 176 (365)
T ss_dssp SCEEEEEECSS--SEEEEEESS------EEEEEESSTT--CCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETT
T ss_pred CccEEEEecCC--CeEEEEcCC------cEEEEcccCC--CCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCC
Confidence 56777777643 455554432 5777777642 23322 22 22345677788899999988775443333
Q ss_pred cCceeecceeEEEEeeCCCceeeeecCCCCCeEEE-EECcCCC-----EEEEEEcc-CCCeEEEEeccc----ee-----
Q 013884 167 TNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDV-QWSYSGS-----EFAVVYGF-MPASATIFNKKC----RP----- 230 (434)
Q Consensus 167 ~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~-~wspdg~-----~~av~~g~-~~~~i~l~d~~~----~~----- 230 (434)
...|..+||.. .......+ +|..-++ .+-.+|+ .|+++... ..+++.+.++.. .+
T Consensus 177 ---~v~G~mQLYS~--er~~sQ~i----eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk 247 (365)
T 2xzh_A 177 ---RVVGAMQLYSV--DRKVSQPI----EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKK 247 (365)
T ss_dssp ---EEEEEEEEEET--TTTEEEEE----CCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCE
T ss_pred ---ccceeEEEEee--ccccccee----eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccc
Confidence 22365555544 33322222 3433333 2222322 44543322 124888887732 11
Q ss_pred EEE--cC----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCcee
Q 013884 231 ILE--LG----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQ 304 (434)
Q Consensus 231 ~~~--~~----~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~ 304 (434)
..+ |. .+.--++..|+.-..+.+-. .-|.|++||++++.++..- .+|+|--++.+....
T Consensus 248 ~vdi~fppea~~DFPVamqvs~kygviyviT---K~G~ihlyDleTgt~i~~n--------rIS~d~iF~ta~~~~---- 312 (365)
T 2xzh_A 248 AVDVFFPPEAQNDFPVAMQISEKHDVVFLIT---KYGYIHLYDLETGTCIYMN--------RISGETIFVTAPHEA---- 312 (365)
T ss_dssp EEEECCCTTCTTCCEEEEEEETTTTEEEEEE---TTSEEEEEETTTCCEEEEE--------ECCSSCEEEEEEEGG----
T ss_pred cceeeCCccccCCceEEEEecccCCEEEEEe---CCcEEEEEEcccCcEEEEe--------ccCCCceEEecccCC----
Confidence 111 11 22223567777666666666 5579999999999877654 445554333332221
Q ss_pred eCCcEEEEeecCceeee
Q 013884 305 IDNGIKIFHHNGSLFFK 321 (434)
Q Consensus 305 ~D~~i~iw~~~g~~~~~ 321 (434)
.++|..-+-.|+.+..
T Consensus 313 -~~Gi~~Vnr~GqVl~v 328 (365)
T 2xzh_A 313 -TAGIIGVNRKGQVLSV 328 (365)
T ss_dssp -GTEEEEEETTCEEEEE
T ss_pred -CCcEEEEcCCCEEEEE
Confidence 4677777777776554
No 276
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.20 E-value=0.075 Score=47.54 Aligned_cols=176 Identities=9% Similarity=0.100 Sum_probs=109.2
Q ss_pred ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 013884 143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASAT 222 (434)
Q Consensus 143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~ 222 (434)
+...+.|+|++..|.++.. . ...|+.++..+.....+++........+++.+++. |++ +...++.+.
T Consensus 28 ~lSGla~~~~~~~L~aV~d----~-------~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~-~~v-s~E~~~~l~ 94 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTIN----K-------PAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQ-FVI-SDERDYAIY 94 (255)
T ss_dssp CEEEEEEETTTTEEEEEEE----T-------TEEEEEEETTCCEEEEEECSSCSSEEEEEECSTTE-EEE-EETTTTEEE
T ss_pred CcceeEEeCCCCEEEEEEC----C-------CCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCE-EEE-EECCCCcEE
Confidence 4567999999887766532 2 22478888877766777776556788999998875 544 344567888
Q ss_pred EEecc--ce----eEEEc------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc--cC--CEEEEE------eeCC
Q 013884 223 IFNKK--CR----PILEL------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY--VD--GKQLGT------TRAE 280 (434)
Q Consensus 223 l~d~~--~~----~~~~~------~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~--~~--~~~i~~------~~~~ 280 (434)
+|++. +. ....+ .......|+|+|.++.|.++.-.. ...|+.|+- .+ ...+.. ....
T Consensus 95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~-p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~ 173 (255)
T 3qqz_A 95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN-PIEVYKVNGLLSSNELHISKDKALQRQFTLD 173 (255)
T ss_dssp EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS-SEEEEEEESTTCSSCCEEEECHHHHHTCCSS
T ss_pred EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC-CceEEEEcccccCCceeeecchhhccccccC
Confidence 88763 21 11111 123346899999997666665221 224555551 11 122111 1112
Q ss_pred CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeecc-----------cceeeEEEcCCC
Q 013884 281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFD-----------KLFQAEWKPVSP 337 (434)
Q Consensus 281 ~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~~~~-----------~~~~~~w~p~~~ 337 (434)
....+++.|...+|++-+.. .+.+.++|.+|+.+...... .--.+++.|++.
T Consensus 174 d~S~l~~dp~tg~lliLS~~-----s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ 236 (255)
T 3qqz_A 174 DVSGAEFNQQKNTLLVLSHE-----SRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN 236 (255)
T ss_dssp CCCEEEEETTTTEEEEEETT-----TTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC
T ss_pred CceeEEEcCCCCeEEEEECC-----CCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCC
Confidence 55679999987777777764 67888899999866554332 334566766653
No 277
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.16 E-value=0.14 Score=46.83 Aligned_cols=215 Identities=8% Similarity=-0.013 Sum_probs=113.8
Q ss_pred CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCcee
Q 013884 92 GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSY 171 (434)
Q Consensus 92 ~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~ 171 (434)
....++|+|++ .. ++... ..+.|..++... ....... .......+.+.++|+ |++ +....+.
T Consensus 33 ~pegia~~~~g-~l--yv~d~---~~~~I~~~d~~g----~~~~~~~-~~~~p~gia~~~dG~-l~v-ad~~~~~----- 94 (306)
T 2p4o_A 33 FLENLASAPDG-TI--FVTNH---EVGEIVSITPDG----NQQIHAT-VEGKVSGLAFTSNGD-LVA-TGWNADS----- 94 (306)
T ss_dssp CEEEEEECTTS-CE--EEEET---TTTEEEEECTTC----CEEEEEE-CSSEEEEEEECTTSC-EEE-EEECTTS-----
T ss_pred CcceEEECCCC-CE--EEEeC---CCCeEEEECCCC----ceEEEEe-CCCCceeEEEcCCCc-EEE-EeccCCc-----
Confidence 35677888864 32 11211 124555555432 2221111 223456788999998 333 2221110
Q ss_pred ecceeEEEEeeCC-CceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce--eEEE--------c--C-Cc
Q 013884 172 YGESKLNYLTTDG-THEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--PILE--------L--G-SG 237 (434)
Q Consensus 172 ~g~~~l~~l~~~~-~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~--~~~~--------~--~-~~ 237 (434)
..++.++... .......+........++..+++ .+.+ +....+.|.++|.... .+.. . . -.
T Consensus 95 ---~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~-~~~v-~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~ 169 (306)
T 2p4o_A 95 ---IPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-QYLT-ADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFP 169 (306)
T ss_dssp ---CEEEEEECTTSCEEEEEECTTCSCEEEEEESSSS-EEEE-EETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSC
T ss_pred ---ceEEEEcCCCCeEEEEEeCCCccccCcccccCCC-cEEE-EECCCCeEEEEeCCCCcEeEEEECCccccccccCCCC
Confidence 1134443222 21122222222233455555544 3333 3445678999987532 2210 0 0 11
Q ss_pred CeeEEEECCCCCeEEEEecCCCCCeEEEEEccC-C-----EEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013884 238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD-G-----KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKI 311 (434)
Q Consensus 238 ~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~-~-----~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~i 311 (434)
.-+.| +|+|++|.++...+ +.|..+|++. + +.+..+ .....++++++|+.+++... .+.|.+
T Consensus 170 ~pngi--s~dg~~lyv~d~~~--~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd~dG~l~va~~~------~~~V~~ 237 (306)
T 2p4o_A 170 AANGL--KRFGNFLYVSNTEK--MLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHI------YNSVVR 237 (306)
T ss_dssp SEEEE--EEETTEEEEEETTT--TEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBT------TCCEEE
T ss_pred cCCCc--CcCCCEEEEEeCCC--CEEEEEEeCCCCCCCccEEEecc--CCCCCeEECCCCCEEEEeCC------CCeEEE
Confidence 23555 89999888887544 7999999874 3 222222 23445899999987665555 788999
Q ss_pred EeecCceee--eee--cccceeeEEE---cCCCCCCC
Q 013884 312 FHHNGSLFF--KKM--FDKLFQAEWK---PVSPDKFG 341 (434)
Q Consensus 312 w~~~g~~~~--~~~--~~~~~~~~w~---p~~~~~~~ 341 (434)
++.+|++.. ... ......+.+. |+...||-
T Consensus 238 ~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyV 274 (306)
T 2p4o_A 238 IAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYV 274 (306)
T ss_dssp ECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEE
T ss_pred ECCCCCEEEEeecccccCCceEEEEecccCCCCEEEE
Confidence 999887643 222 2346677777 66555554
No 278
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.01 E-value=0.034 Score=49.83 Aligned_cols=159 Identities=12% Similarity=0.082 Sum_probs=90.1
Q ss_pred CCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCC-ceeeeecC
Q 013884 115 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-HEGLVPLR 193 (434)
Q Consensus 115 ~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~-~~~~v~l~ 193 (434)
+..+.|+.+++.+ ++.+.+. ... .....-..++|+.|.+++- .+..++.++.... ....++..
T Consensus 72 G~~g~v~~iD~~T---gkv~~~~-l~~-~~FgeGit~~g~~Ly~ltw-----------~~~~v~V~D~~Tl~~~~ti~~~ 135 (268)
T 3nok_A 72 GHQGTLRQLSLES---AQPVWME-RLG-NIFAEGLASDGERLYQLTW-----------TEGLLFTWSGMPPQRERTTRYS 135 (268)
T ss_dssp TTTTEEEECCSSC---SSCSEEE-ECT-TCCEEEEEECSSCEEEEES-----------SSCEEEEEETTTTEEEEEEECS
T ss_pred CCCCEEEEEECCC---CcEEeEE-CCC-CcceeEEEEeCCEEEEEEc-----------cCCEEEEEECCcCcEEEEEeCC
Confidence 4556689999887 6666655 322 2111112334566655421 1223455554332 12333333
Q ss_pred CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce-eEEEc----C---CcCeeEEEECCCCCeEEEEecCCCCCeEEE
Q 013884 194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL----G---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAF 265 (434)
Q Consensus 194 ~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~-~~~~~----~---~~~~~~i~~sP~g~~l~~~~~~~~~g~i~i 265 (434)
.++ ..++ +|++.|.+. . ..+++.++|.+.. .+..+ . -...|.+.|. +|++.+ +.. ....|.+
T Consensus 136 ~eG--wGLt--~Dg~~L~vS-d-Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lya-nvw--~s~~I~v 205 (268)
T 3nok_A 136 GEG--WGLC--YWNGKLVRS-D-GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYA-NIW--HSSDVLE 205 (268)
T ss_dssp SCC--CCEE--EETTEEEEE-C-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE-EET--TCSEEEE
T ss_pred Cce--eEEe--cCCCEEEEE-C-CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEE-EEC--CCCeEEE
Confidence 222 2333 678888864 3 3679999998643 33332 1 2245788888 776444 433 2359999
Q ss_pred EEccCCEEEEEeeCC--------------CceE-EEECCCCCEEEEEEc
Q 013884 266 WDYVDGKQLGTTRAE--------------CSVT-SEWSPDGRYFMTATT 299 (434)
Q Consensus 266 wd~~~~~~i~~~~~~--------------~~~~-~~wspdg~~l~tas~ 299 (434)
.|.++++.+..+... .+.. ++|+|+++.|++++.
T Consensus 206 IDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 206 IDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp ECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 999999888777542 2333 999998665555443
No 279
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.98 E-value=0.039 Score=54.38 Aligned_cols=155 Identities=12% Similarity=0.109 Sum_probs=90.9
Q ss_pred eeEEEECC-CCCeEEEEEEecccccCceeecceeEEEEeeCCCceeee-ecCC--CCCeEEEEE-------CcCCCEEEE
Q 013884 144 TVQLNWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PLRK--EGPVHDVQW-------SYSGSEFAV 212 (434)
Q Consensus 144 ~~~~~ws~-~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l~~--~~~i~~~~w-------spdg~~~av 212 (434)
...|.+.| ++..|.++. . ....|..++..+.....+ .... ......++| +++|+.+.+
T Consensus 141 p~~la~dp~~~~~Lyv~~-~----------~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyv 209 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICY-D----------GHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIV 209 (496)
T ss_dssp EEEEEEETTEEEEEEEEE-E----------TEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEE
T ss_pred CCEEEEccCCCCEEEEEE-C----------CCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEE
Confidence 34677887 355554432 1 112366666555322221 1111 124789999 999996665
Q ss_pred EEccCC------CeEEEEeccc--eeE-----EEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc-------CC
Q 013884 213 VYGFMP------ASATIFNKKC--RPI-----LEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV-------DG 271 (434)
Q Consensus 213 ~~g~~~------~~i~l~d~~~--~~~-----~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~-------~~ 271 (434)
. .... ..+.+++... ... ..+ .-...+.++.+|++.+|.++..++ +.|+.+|.+ ++
T Consensus 210 a-d~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~--g~V~r~d~~~~~~~~~tg 286 (496)
T 3kya_A 210 A-IDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEK--GQVFRLDLVDYFKTIKNG 286 (496)
T ss_dssp E-ECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTT--TEEEEECHHHHHHHHHTT
T ss_pred E-eCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCC--CEEEEEecccccccccCc
Confidence 3 3322 2466665322 110 111 112346789999877777777654 789999987 44
Q ss_pred EE--------------EEEee-CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884 272 KQ--------------LGTTR-AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 272 ~~--------------i~~~~-~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~ 317 (434)
+. +.... ......++|+|+|++|..+.+. .+.|+.+++++.
T Consensus 287 ~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~-----~h~I~kid~dg~ 342 (496)
T 3kya_A 287 GSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVIN-----NHYFMRSDYDEI 342 (496)
T ss_dssp CCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETT-----TTEEEEEEEETT
T ss_pred eeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCC-----CCEEEEEecCCC
Confidence 32 22222 2345679999999987777653 677888877664
No 280
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.92 E-value=0.28 Score=46.07 Aligned_cols=240 Identities=13% Similarity=0.127 Sum_probs=111.8
Q ss_pred CCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeee-----cCCeeEEEEeCC---CCCeEEEEecCCCCCCceEE
Q 013884 50 TTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLR-----VPGVAAFEVSKA---PGSHVAVFVPESKGSPASVQ 121 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~-----~~~v~~~~~sp~---~~~~ia~~~~~~~~~~~~v~ 121 (434)
..| .++|.|||+++++-..+.|.+++ +........+. ..+...++++|+ ++....++.....+....|.
T Consensus 32 ~P~-~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPW-ALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEE-EEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred Cce-EEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 345 89999999988877778999998 22111111111 246788999997 33333333322111124566
Q ss_pred EEEcCCCCC--CCceee-ee---ecccceeEEEECCCCCeEEEEEEecccccCce---eecceeEEEEeeCCCc------
Q 013884 122 IYACGKDLQ--SQPLAR-RS---FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQS---YYGESKLNYLTTDGTH------ 186 (434)
Q Consensus 122 i~~~~~~~~--~~~i~~-~~---~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~---~~g~~~l~~l~~~~~~------ 186 (434)
.+++..... .+.+.. .. ........+.|.|||. |.+. ..+....... -.....++.++..+..
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~-~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVT-TGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEE-CCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEE-ECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 666543100 011111 11 0011224789999994 4443 2221100000 0011246666655521
Q ss_pred -------eeeeecCCCCCeEEEEECc-CCCEEEEEEccCC------CeEEEEeccc-----------------eeEEEcC
Q 013884 187 -------EGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMP------ASATIFNKKC-----------------RPILELG 235 (434)
Q Consensus 187 -------~~~v~l~~~~~i~~~~wsp-dg~~~av~~g~~~------~~i~l~d~~~-----------------~~~~~~~ 235 (434)
........ .....++|+| +|..++.-.+... ..+.+...-. .++..+.
T Consensus 187 ~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~ 265 (352)
T 2ism_A 187 LGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP 265 (352)
T ss_dssp TTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred cCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC
Confidence 01111110 1135689999 5665553222211 1244432111 1222331
Q ss_pred -CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE-------EEEEee-CCCceEEEECCCCCEEEEEEc
Q 013884 236 -SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK-------QLGTTR-AECSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 236 -~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~-------~i~~~~-~~~~~~~~wspdg~~l~tas~ 299 (434)
......++| .+|.+++ +... .+.|...+++... ....+. ...+..+++.|||..+++...
T Consensus 266 ~~~ap~G~~~-~~G~l~v-~~~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~~ 334 (352)
T 2ism_A 266 QGFPPGNLAF-FRGDLYV-AGLR--GQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTSN 334 (352)
T ss_dssp TCCCEEEEEE-ETTEEEE-EETT--TTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEECS
T ss_pred CCCCCcceEE-ECCEEEE-EECC--CCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEeC
Confidence 122344566 4565544 4432 2578777765321 111112 236677999999977666543
No 281
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.87 E-value=0.58 Score=49.05 Aligned_cols=265 Identities=10% Similarity=0.068 Sum_probs=142.0
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP 81 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~ 81 (434)
|.+|.+.++|++.+.. .++.|..||..+++........ ....+.++...+++.+.+...++-|.+|+.....
T Consensus 175 i~~i~~d~~g~lwigt------~~~Gl~~~~~~~~~~~~~~~~~--~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~ 246 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGT------STDGLYTYSITQKTFEKVIPIL--GTKQIQAILQQSPTRIWVATEGAGLFLINPKTKE 246 (795)
T ss_dssp CEEEEEEETTEEEEEE------SSSCEEEEETTTCCEEECC------CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTE
T ss_pred eEEEEECCCCCEEEEE------CCCCEEEEeCCCCeEEEecCCC--CCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCe
Confidence 5677788888877642 2346889998777653321111 1134446666677877766555568888875522
Q ss_pred Cceeee--------eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee--------eeccccee
Q 013884 82 KGILYR--------LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR--------SFFRCSTV 145 (434)
Q Consensus 82 ~~~~~~--------~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~--------~~~~~~~~ 145 (434)
. .... +....|.++...+++.-.++. . .-+.+|+... . ..... ......+.
T Consensus 247 ~-~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt----~----~Gl~~~~~~~---~-~~~~~~~~~~~~~~l~~~~i~ 313 (795)
T 4a2l_A 247 I-KNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGT----F----NDLNIYHEGT---D-SFASYSSNPVENGSLSQRSVR 313 (795)
T ss_dssp E-EEECCCTTCTTSCSCSBEEEEEECTTSCEEEEE----S----SCEEEEETTT---T-EEEEECCCTTSTTSCSSSCEE
T ss_pred E-EEeecCCCCccccCCCeEEEEEEcCCCCEEEEe----C----ChhheEcCCC---C-eEEEEecCCCCCCCCCCCcEE
Confidence 1 1111 112346666666553322221 1 1245555433 1 11111 01122344
Q ss_pred EEEECCCCCeEEEEEEecccccCceeecc--eeEEEEeeCCCceeeeec-C-----CCCCeEEEEECcCCCEEEEEEccC
Q 013884 146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGE--SKLNYLTTDGTHEGLVPL-R-----KEGPVHDVQWSYSGSEFAVVYGFM 217 (434)
Q Consensus 146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~--~~l~~l~~~~~~~~~v~l-~-----~~~~i~~~~wspdg~~~av~~g~~ 217 (434)
++...++|.. |.|. ..|+.++.....-..... . ....|.++...++|+..+ |..
T Consensus 314 ~i~~D~~g~l---------------Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWi---Gt~ 375 (795)
T 4a2l_A 314 SIFMDSQGGM---------------WLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWI---GTN 375 (795)
T ss_dssp EEEECTTSCE---------------EEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEE---EES
T ss_pred EEEEeCCcCE---------------EEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEE---EEC
Confidence 5555555552 2221 134444322211111110 0 135689999998887655 555
Q ss_pred CCeEEEEeccceeEEEc-----------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee------CC
Q 013884 218 PASATIFNKKCRPILEL-----------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR------AE 280 (434)
Q Consensus 218 ~~~i~l~d~~~~~~~~~-----------~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~------~~ 280 (434)
.+-+..||.+......+ ....+.+++..++|++|.+|..+ +-|.++|.++++...... ..
T Consensus 376 ~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~---~Gl~~~d~~~~~~~~~~~~~~~l~~~ 452 (795)
T 4a2l_A 376 DGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHA---GGLSILHRNSGQVENFNQRNSQLVNE 452 (795)
T ss_dssp SSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETT---TEEEEEETTTCCEEEECTTTSCCSCS
T ss_pred CCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCc---CceeEEeCCCCcEEEeecCCCCcCCC
Confidence 56788888765444332 23567888888999855566643 369999988775433221 23
Q ss_pred CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884 281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 281 ~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
.+..+...++|+..+ |+ .+++.+|+...
T Consensus 453 ~v~~i~~d~~g~lwi-gt-------~~Gl~~~~~~~ 480 (795)
T 4a2l_A 453 NVYAILPDGEGNLWL-GT-------LSALVRFNPEQ 480 (795)
T ss_dssp CEEEEEECSSSCEEE-EE-------SSCEEEEETTT
T ss_pred eeEEEEECCCCCEEE-Ee-------cCceeEEeCCC
Confidence 455678888887544 33 34566676543
No 282
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.86 E-value=0.04 Score=49.41 Aligned_cols=133 Identities=11% Similarity=0.065 Sum_probs=81.9
Q ss_pred EEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCc
Q 013884 5 LTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKG 83 (434)
Q Consensus 5 l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~ 83 (434)
+++..+--|.++| .++.+.++|..+++.+.++.... ..| .++ +|++.|..+ .+++|+++|..++...
T Consensus 101 it~~g~~Ly~ltw------~~~~v~V~D~~Tl~~~~ti~~~~---eGw-GLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~ 168 (268)
T 3nok_A 101 LASDGERLYQLTW------TEGLLFTWSGMPPQRERTTRYSG---EGW-GLC--YWNGKLVRSDGGTMLTFHEPDGFALV 168 (268)
T ss_dssp EEECSSCEEEEES------SSCEEEEEETTTTEEEEEEECSS---CCC-CEE--EETTEEEEECSSSEEEEECTTTCCEE
T ss_pred EEEeCCEEEEEEc------cCCEEEEEECCcCcEEEEEeCCC---cee-EEe--cCCCEEEEECCCCEEEEEcCCCCeEE
Confidence 3444333344554 36899999999999999997643 667 555 577766655 4679999999887643
Q ss_pred eeeeee-----cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc-------------ccee
Q 013884 84 ILYRLR-----VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR-------------CSTV 145 (434)
Q Consensus 84 ~~~~~~-----~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~-------------~~~~ 145 (434)
...... ...+..++|. ++.-++.+| ....|.+.|..+ ++.+..+.+.. .--.
T Consensus 169 ~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw------~s~~I~vIDp~T---G~V~~~Idl~~L~~~~~~~~~~~~~vlN 238 (268)
T 3nok_A 169 GAVQVKLRGQPVELINELECA-NGVIYANIW------HSSDVLEIDPAT---GTVVGVIDASALTRAVAGQVTNPEAVLN 238 (268)
T ss_dssp EEEECEETTEECCCEEEEEEE-TTEEEEEET------TCSEEEEECTTT---CBEEEEEECHHHHHHHTTTCCCTTCCEE
T ss_pred EEEEeCCCCcccccccccEEe-CCEEEEEEC------CCCeEEEEeCCC---CcEEEEEECCCCcccccccccCcCCceE
Confidence 322222 2345677777 322122221 123666666665 56665555431 1225
Q ss_pred EEEECCCCCeEEEE
Q 013884 146 QLNWNRGSTGLLAV 159 (434)
Q Consensus 146 ~~~ws~~G~~l~~~ 159 (434)
.++|+|+++.|++.
T Consensus 239 GIA~dp~~~rlfVT 252 (268)
T 3nok_A 239 GIAVEPGSGRIFMT 252 (268)
T ss_dssp EEEECTTTCCEEEE
T ss_pred EEEEcCCCCEEEEe
Confidence 68999999887663
No 283
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.85 E-value=0.36 Score=46.33 Aligned_cols=267 Identities=15% Similarity=0.155 Sum_probs=150.1
Q ss_pred CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeec
Q 013884 11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRV 90 (434)
Q Consensus 11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~ 90 (434)
.+|++.-+. ..++..|.|-|+.++..+....-.. + +.--.|..+.+|.-.+.+++|||+....+.....+ .
T Consensus 35 DkyicVrE~--~~~~~~vvIiDl~~~~~~~rrpi~A---d---sAIMnP~~~iiALrag~~lQiFnle~K~klks~~~-~ 105 (494)
T 1bpo_A 35 DKFICIREK--VGEQAQVVIIDMNDPSNPIRRPISA---D---SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-T 105 (494)
T ss_dssp TTEEEEEEC--CTTCCEEEEEETTSTTSCEEEECCC---S---EEEECSSSSCEEEEETTEEEEEETTTTEEEEEEEC-S
T ss_pred CceEEEEec--CCCCCeEEEEECCCCCcceeccccc---c---eeeeCCCCcEEEEecCCeEEEEchHHhhhhcceec-C
Confidence 467766653 2234589999999876554333221 1 33457788888877788999999988554322222 3
Q ss_pred CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee--ee--eecccceeEEEECCCCCeEEEEEEecccc
Q 013884 91 PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA--RR--SFFRCSTVQLNWNRGSTGLLAVAQSDVDK 166 (434)
Q Consensus 91 ~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~--~~--~~~~~~~~~~~ws~~G~~l~~~~~~~~d~ 166 (434)
+.|..-.|-.. ..+++... ..|.-|++... ..|+. .+ ++....+....-++++++++++.-...+.
T Consensus 106 e~VvfWkWis~--~~l~lVT~------taVyHWsi~~~--s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~ 175 (494)
T 1bpo_A 106 DDVTFWKWISL--NTVALVTD------NAVYHWSMEGE--SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQN 175 (494)
T ss_dssp SCCCEEEEEET--TEEEEECS------SEEEEEESSSS--CCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETT
T ss_pred CCceEEEecCC--CeEEEEcC------CeeEEecccCC--CCchhheecchhcccceEEEEEECCCCCeEEEEeecccCC
Confidence 45666666543 45555433 25777777542 23322 22 12345677788899999988776543333
Q ss_pred cCceeecceeEEEEeeCCCceeeeecCCCCCeEEEE-ECcCC-----CEEEEEEcc-CCCeEEEEeccce----e-----
Q 013884 167 TNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQ-WSYSG-----SEFAVVYGF-MPASATIFNKKCR----P----- 230 (434)
Q Consensus 167 ~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~-wspdg-----~~~av~~g~-~~~~i~l~d~~~~----~----- 230 (434)
...|...||.+ .......+ +|..-+++ +-.+| ..|++.... ..+++.|.++... +
T Consensus 176 ---~v~G~mQLYS~--er~~sQ~i----eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk 246 (494)
T 1bpo_A 176 ---RVVGAMQLYSV--DRKVSQPI----EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKK 246 (494)
T ss_dssp ---EEEEEEEEEES--TTCCEEEE----CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCE
T ss_pred ---cccceEEEeec--cccccchh----eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccce
Confidence 22365556554 33322222 33333322 22222 244543322 2258888887321 1
Q ss_pred EEEc--C----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCcee
Q 013884 231 ILEL--G----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQ 304 (434)
Q Consensus 231 ~~~~--~----~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~ 304 (434)
..++ . .+.-.++..|+.-..+.+-. .-|.|++||++++.++..-. +|+|--++.+....
T Consensus 247 ~vdv~fppe~~~DFPvamqvs~kygviyviT---K~G~i~lyDleTgt~i~~nr--------Is~~~iF~t~~~~~---- 311 (494)
T 1bpo_A 247 AVDVFFPPEAQNDFPVAMQISEKHDVVFLIT---KYGYIHLYDLETGTCIYMNR--------ISGETIFVTAPHEA---- 311 (494)
T ss_dssp EEECCCCTTSTTCCEEEEEEETTTTEEEEEE---TTSEEEEEETTTCCEEEEEE--------CCSSCEEEEEEETT----
T ss_pred eeeeeCCcccccCceeEEEecccCCEEEEEe---cCceEEEEecccceeeeeec--------ccCCceEEecccCC----
Confidence 1111 1 22334677888777777776 56799999999998776543 44443333222221
Q ss_pred eCCcEEEEeecCceeee
Q 013884 305 IDNGIKIFHHNGSLFFK 321 (434)
Q Consensus 305 ~D~~i~iw~~~g~~~~~ 321 (434)
.++|..-+-.|+.+..
T Consensus 312 -~~Gi~~Vnr~GqVl~v 327 (494)
T 1bpo_A 312 -TAGIIGVNRKGQVLSV 327 (494)
T ss_dssp -TTEEEEEETTCEEEEE
T ss_pred -CCcEEEEccCceEEEE
Confidence 4566666666766554
No 284
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.72 E-value=0.36 Score=44.55 Aligned_cols=247 Identities=11% Similarity=0.149 Sum_probs=146.2
Q ss_pred eeeecCCCcEEEEe-c--CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013884 54 SIRFSSDEAVACRM-A--TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130 (434)
Q Consensus 54 ~~~~S~d~~~la~~-~--~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~ 130 (434)
.+.+..|--.|++- . +++|.|.|+.+........+. ..+.-++|. ...+|+-. ...++|+++..
T Consensus 30 ~lTmESDkyicVrE~~~~~~~VvIiDl~n~~~~~Rrpi~---AdsAIMnP~-~~ViALra------g~~LQiFnlet--- 96 (365)
T 2xzh_A 30 TLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPIS---ADSAIMNPA-SKVIALKA------GKTLQIFNIEM--- 96 (365)
T ss_dssp TEEEEETTEEEEEEEETTEEEEEEEETTSTTSCEEEECC---CSEEEECSS-SSEEEEEE------TTEEEEEETTT---
T ss_pred eeeeecCceEEEEecCCCCCEEEEEECCCCCCccccccc---cceeeeCCC-ccEEEEec------CCeEEEechHH---
Confidence 44444444444443 2 248999999886653222222 234567887 67777643 35799999988
Q ss_pred CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC-----CCCCeEEEEECc
Q 013884 131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-----KEGPVHDVQWSY 205 (434)
Q Consensus 131 ~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-----~~~~i~~~~wsp 205 (434)
++.+....+ ..+++-.+|-.+.. |.+++.+ .+|.+++.+......-++ ....|-...-++
T Consensus 97 K~klks~~~-~e~VvfWkWis~~~-L~lVT~t-------------aVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~ 161 (365)
T 2xzh_A 97 KSKMKAHTM-TDDVTFWKWISLNT-VALVTDN-------------AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA 161 (365)
T ss_dssp TEEEEEEEC-SSCEEEEEECSSSE-EEEEESS-------------EEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECT
T ss_pred hhhhcceec-CCccEEEEecCCCe-EEEEcCC-------------cEEEEcccCCCCCceeeecchhcccceEEEEEECC
Confidence 677776665 45777788876544 4444322 356666655322211111 146788888999
Q ss_pred CCCEEEEEEc-----cCCCeEEEEeccceeEEEcCCcCeeEEEECCCCC-----eEEEEecCCCCCeEEEEEccCC----
Q 013884 206 SGSEFAVVYG-----FMPASATIFNKKCRPILELGSGPYNTVRWNPKGK-----FLCLAGFGNLPGDMAFWDYVDG---- 271 (434)
Q Consensus 206 dg~~~av~~g-----~~~~~i~l~d~~~~~~~~~~~~~~~~i~~sP~g~-----~l~~~~~~~~~g~i~iwd~~~~---- 271 (434)
+.++++++.= ...|.+.||..+.+....+......-..+-.+|. +++.+..+...+++.|-++...
T Consensus 162 ~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~ 241 (365)
T 2xzh_A 162 KQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN 241 (365)
T ss_dssp TSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTC
T ss_pred CCCEEEEEeEeccCCccceeEEEEeecccccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCC
Confidence 9999988521 1345788998865544433322222233433333 5666654323368999987431
Q ss_pred -----EEEEEee-C----CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec--ccceeeEEEc
Q 013884 272 -----KQLGTTR-A----ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF--DKLFQAEWKP 334 (434)
Q Consensus 272 -----~~i~~~~-~----~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~~~--~~~~~~~w~p 334 (434)
+.+..+- . .-++.+..|+--..+..-+. -|-++++|+ +|.+++.... +.++..+-..
T Consensus 242 ~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK------~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~ 311 (365)
T 2xzh_A 242 QPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK------YGYIHLYDLETGTCIYMNRISGETIFVTAPHE 311 (365)
T ss_dssp CCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEET------TSEEEEEETTTCCEEEEEECCSSCEEEEEEEG
T ss_pred CCcccccceeeCCccccCCceEEEEecccCCEEEEEeC------CcEEEEEEcccCcEEEEeccCCCceEEecccC
Confidence 1222111 1 13455888888888888888 799999999 7788887654 3455444433
No 285
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.72 E-value=0.0085 Score=62.25 Aligned_cols=113 Identities=11% Similarity=0.035 Sum_probs=74.6
Q ss_pred eEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEcC---CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE--
Q 013884 198 VHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK-- 272 (434)
Q Consensus 198 i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~~---~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~-- 272 (434)
...+++.+.+..|.+ +....+.|.++++.+..+..+. ...-+.|++.|.+.+|+++..+ ..+.|+.+++....
T Consensus 455 P~glavD~~~g~LY~-tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~-~~~~I~~~~~dG~~~~ 532 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYW-TDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIY 532 (699)
T ss_dssp CCCEECCCSSSBCEE-CCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS-SSCCEEBCCSSSCCCC
T ss_pred cceEEEEeeCCcEEE-EeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccC-CCCeEEEEeCCCCCee
Confidence 456888866666554 3445678999999876554442 2345789999988777766543 23688888876432
Q ss_pred EEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884 273 QLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 273 ~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~ 317 (434)
.+.......+..++|+|++..|+.+... .+.|.+++++|.
T Consensus 533 ~l~~~~l~~PnGlavd~~~~~LY~aD~~-----~~~I~~~d~dG~ 572 (699)
T 1n7d_A 533 SLVTENIQWPNGITLDLLSGRLYWVDSK-----LHSISSIDVNGG 572 (699)
T ss_dssp EESCSSCSSCCCEEECTTTCCEEEEETT-----TTEEEEECSSSS
T ss_pred EEEeCCCCCccEEEEeccCCEEEEEecC-----CCeEEEEccCCC
Confidence 2211122345569999998877777653 677899998875
No 286
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.64 E-value=0.68 Score=46.61 Aligned_cols=59 Identities=19% Similarity=0.224 Sum_probs=41.1
Q ss_pred CCeEEEEEccCCEEEEEeeCCC-ceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec
Q 013884 260 PGDMAFWDYVDGKQLGTTRAEC-SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF 324 (434)
Q Consensus 260 ~g~i~iwd~~~~~~i~~~~~~~-~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~~~ 324 (434)
.|.|..||..+++.+..+.... .........+..+++++. |+.|++||. +|+++.+...
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~------dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATL------DGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECT------TSEEEEEETTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcC------CCeEEEEECCCCCEEEEEeC
Confidence 4789999999998887775432 112222334566777777 999999997 7877765543
No 287
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.64 E-value=0.85 Score=47.69 Aligned_cols=108 Identities=11% Similarity=0.129 Sum_probs=69.8
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc-----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013884 195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV 269 (434)
Q Consensus 195 ~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~-----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~ 269 (434)
...|.++...++|...+ |...+-+..||.+...+..+ ....+.++...++|++.+ |.. +-|..+|..
T Consensus 406 ~~~v~~i~~d~~g~lWi---gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~----~Gl~~~~~~ 477 (781)
T 3v9f_A 406 SNSVLCSLKDSEGNLWF---GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH----AGVFVIDLA 477 (781)
T ss_dssp CSBEEEEEECTTSCEEE---EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET----TEEEEEESS
T ss_pred CcceEEEEECCCCCEEE---EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC----CceEEEeCC
Confidence 35788999888887665 44445788888865555444 245688888888887554 442 359999987
Q ss_pred CCEEEEEe--e-----CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884 270 DGKQLGTT--R-----AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 270 ~~~~i~~~--~-----~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~ 317 (434)
+++..... . ...+..+...++|+..+ |+. ++++..++..+.
T Consensus 478 ~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~------~~Gl~~~~~~~~ 525 (781)
T 3v9f_A 478 SKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTF------GGGVGIYTPDMQ 525 (781)
T ss_dssp SSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EES------SSCEEEECTTCC
T ss_pred CCeEEecccCcccccccceeEEEEEcCCCCEEE-EEc------CCCEEEEeCCCC
Confidence 76432222 1 12455688888888544 454 466777766443
No 288
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.55 E-value=0.53 Score=44.24 Aligned_cols=97 Identities=14% Similarity=0.163 Sum_probs=57.4
Q ss_pred CCeEEEEECcCCCEEEEEEcc-----------------CCCeEEEEeccceeEEEc--CCcCeeEEEECCCCCeEEEEec
Q 013884 196 GPVHDVQWSYSGSEFAVVYGF-----------------MPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGF 256 (434)
Q Consensus 196 ~~i~~~~wspdg~~~av~~g~-----------------~~~~i~l~d~~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~ 256 (434)
...+++...++|+.++ ++. ..+.+..+|.. .+..+ +-..-|.|+|||||+.|.++..
T Consensus 165 ~~pND~~v~~~G~fyv--t~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~l~~pNGia~spDg~~lYvadt 240 (355)
T 3sre_A 165 PSVNDIVAVGPEHFYA--TNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIAEL 240 (355)
T ss_dssp SSEEEEEEEETTEEEE--EESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred CCCceEEEeCCCCEEe--cCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeecCCcccCcceECCCCCEEEEEeC
Confidence 3567888888876544 221 11345555543 11111 2234589999999999988875
Q ss_pred CCCCCeEEEEEcc-CCE--EEEEeeCCCceE-EEECC-CCCEEEEEE
Q 013884 257 GNLPGDMAFWDYV-DGK--QLGTTRAECSVT-SEWSP-DGRYFMTAT 298 (434)
Q Consensus 257 ~~~~g~i~iwd~~-~~~--~i~~~~~~~~~~-~~wsp-dg~~l~tas 298 (434)
.. +.|+.||++ +++ ....+......+ ++..+ +|++.+++.
T Consensus 241 ~~--~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 241 LA--HKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp GG--TEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred CC--CeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEec
Confidence 33 689999986 332 122232223333 88888 588766554
No 289
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=96.55 E-value=0.00072 Score=64.58 Aligned_cols=109 Identities=14% Similarity=0.096 Sum_probs=45.6
Q ss_pred eEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEcCC--c-Ce-eEEEECCCCCeEEEEecCCCCCeEEEEEccCCE
Q 013884 198 VHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILELGS--G-PY-NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK 272 (434)
Q Consensus 198 i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~~~--~-~~-~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~ 272 (434)
+.+..+.+++..++ .+..++.+..||.+ ++.+..+.. . .+ .+..++ ++..|++++ .+|.|+.||.++++
T Consensus 40 ~~s~p~~~~g~~~v--~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~---~dg~v~a~D~~tG~ 113 (369)
T 2hz6_A 40 VLQVPTHVEEPAFL--PDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGK---KQDIWYVIDLLTGE 113 (369)
T ss_dssp SCCCC-----CCEE--ECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCE---EEEEEEEECCC---
T ss_pred ceecceEcCCCEEE--EeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEe---CCCEEEEEECCCCc
Confidence 33333445665555 46778999999984 444333311 1 11 111111 344555555 34689999999999
Q ss_pred EEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceee
Q 013884 273 QLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFF 320 (434)
Q Consensus 273 ~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~ 320 (434)
.+..+..+. ...++|++..|++++. |+.|+.||. +|+++.
T Consensus 114 ~~w~~~~~~--~~~~~p~~~~v~~~~~------dg~v~a~d~~tG~~~W 154 (369)
T 2hz6_A 114 KQQTLSSAF--ADSLSPSTSLLYLGRT------EYTITMYDTKTRELRW 154 (369)
T ss_dssp ---------------------EEEEEE------EEEEECCCSSSSSCCC
T ss_pred EEEEecCCC--cccccccCCEEEEEec------CCEEEEEECCCCCEEE
Confidence 887776543 2456789999999988 888999987 566543
No 290
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.50 E-value=0.26 Score=50.57 Aligned_cols=70 Identities=13% Similarity=0.068 Sum_probs=45.5
Q ss_pred eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec--C-----CeEEEEe
Q 013884 4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA--T-----NEIQFFD 76 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--~-----~~i~v~~ 76 (434)
++++.++|+.+++.+. .+..+.+||..+++-... ..-. ......++...+||++++.++ + +.+.+||
T Consensus 247 ~~~~~~~g~lyv~GG~----~~~~v~~yd~~t~~W~~~-~~~~-~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd 320 (656)
T 1k3i_A 247 GISMDGNGQIVVTGGN----DAKKTSLYDSSSDSWIPG-PDMQ-VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYS 320 (656)
T ss_dssp EEEECTTSCEEEECSS----STTCEEEEEGGGTEEEEC-CCCS-SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEE
T ss_pred cccCCCCCCEEEeCCC----CCCceEEecCcCCceeEC-CCCC-ccccccceEEecCCeEEEEeCcccCCcccccceEeC
Confidence 3678899998888762 235799999988754322 1111 112222455667999888875 2 5799999
Q ss_pred CCC
Q 013884 77 TTD 79 (434)
Q Consensus 77 ~~~ 79 (434)
...
T Consensus 321 ~~t 323 (656)
T 1k3i_A 321 PSS 323 (656)
T ss_dssp TTT
T ss_pred CCC
Confidence 865
No 291
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=96.46 E-value=0.91 Score=45.94 Aligned_cols=76 Identities=12% Similarity=0.071 Sum_probs=44.6
Q ss_pred CeEEEEeccc-eeEEEcC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC-c--eEEEECCCCCE
Q 013884 219 ASATIFNKKC-RPILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC-S--VTSEWSPDGRY 293 (434)
Q Consensus 219 ~~i~l~d~~~-~~~~~~~-~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~-~--~~~~wspdg~~ 293 (434)
+.+.-||++. +.+-+.. ..+...-...-.|.++++++ .+|.|+.||.++++++..++... + .-+.|..||+.
T Consensus 453 G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt---~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q 529 (599)
T 1w6s_A 453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGT---LDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ 529 (599)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEEC---TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEEC---CCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence 4666777753 3333331 11111111222466666666 66899999999999998886542 1 22677788875
Q ss_pred EEEE
Q 013884 294 FMTA 297 (434)
Q Consensus 294 l~ta 297 (434)
++..
T Consensus 530 yv~~ 533 (599)
T 1w6s_A 530 YVAI 533 (599)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 292
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.44 E-value=0.97 Score=46.06 Aligned_cols=221 Identities=7% Similarity=-0.006 Sum_probs=118.6
Q ss_pred CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCC
Q 013884 25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAP 102 (434)
Q Consensus 25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 102 (434)
...|+..++.+......+..... .....++|.+++..+... .++.|+.++...................+++.+.+
T Consensus 14 ~~~I~~i~l~~~~~~~~~~~~~~--~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~ 91 (628)
T 4a0p_A 14 RADIRRISLETNNNNVAIPLTGV--KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLG 91 (628)
T ss_dssp TTEEEEEESSCTTCEEECCCCSC--SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTT
T ss_pred CCcEEEEECCCCCcceEEEcCCC--CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCC
Confidence 46788889876653333222111 223378999876655544 45799999876533222221122345567776653
Q ss_pred CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEee
Q 013884 103 GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT 182 (434)
Q Consensus 103 ~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~ 182 (434)
+. + +|... ..+.|.+.++.... ...+.. ..-..-..+...|....|.+. + ... ...|+.++.
T Consensus 92 ~~-L-Y~tD~---~~~~I~v~~~dG~~-~~~l~~--~~l~~P~~iavdp~~G~lY~t-D--~g~-------~~~I~r~~~ 153 (628)
T 4a0p_A 92 KN-L-YWADT---GTNRIEVSKLDGQH-RQVLVW--KDLDSPRALALDPAEGFMYWT-E--WGG-------KPKIDRAAM 153 (628)
T ss_dssp TE-E-EEEET---TTTEEEEEETTSTT-CEEEEC--SSCCCEEEEEEETTTTEEEEE-E--CSS-------SCEEEEEET
T ss_pred CE-E-EEEEC---CCCEEEEEecCCCc-EEEEEe--CCCCCcccEEEccCCCeEEEe-C--CCC-------CCEEEEEeC
Confidence 22 2 23222 23577777775411 111111 111233567777765555442 1 111 224677777
Q ss_pred CCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCC
Q 013884 183 DGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLP 260 (434)
Q Consensus 183 ~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~ 260 (434)
+|.....+ +..-.....++++++++.+.++ ....+.|..+|+.+.....+ ....-..|++. +..|..+...+
T Consensus 154 dG~~~~~l-~~~~~~P~GlalD~~~~~LY~a-D~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~--~~~ly~tD~~~-- 227 (628)
T 4a0p_A 154 DGSERTTL-VPNVGRANGLTIDYAKRRLYWT-DLDTNLIESSNMLGLNREVIADDLPHPFGLTQY--QDYIYWTDWSR-- 227 (628)
T ss_dssp TSCSCEEE-ECSCSSEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEEECCSCEEEEEEE--TTEEEEEETTT--
T ss_pred CCCceEEE-ECCCCCcceEEEccccCEEEEE-ECCCCEEEEEcCCCCceEEeeccCCCceEEEEE--CCEEEEecCCC--
Confidence 66533222 2333456899999998888874 45567999999865432222 11222345554 34666665443
Q ss_pred CeEEEEEccCC
Q 013884 261 GDMAFWDYVDG 271 (434)
Q Consensus 261 g~i~iwd~~~~ 271 (434)
+.|...|..++
T Consensus 228 ~~I~~~dk~tg 238 (628)
T 4a0p_A 228 RSIERANKTSG 238 (628)
T ss_dssp TEEEEEETTTC
T ss_pred CEEEEEECCCC
Confidence 68888886655
No 293
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.42 E-value=0.38 Score=44.49 Aligned_cols=121 Identities=13% Similarity=0.153 Sum_probs=77.2
Q ss_pred eEEEE---CCCCCeEEEEEEe--cccccCceeecceeEEEEeeC----CCceeeeecC------------CCCCeEEEEE
Q 013884 145 VQLNW---NRGSTGLLAVAQS--DVDKTNQSYYGESKLNYLTTD----GTHEGLVPLR------------KEGPVHDVQW 203 (434)
Q Consensus 145 ~~~~w---s~~G~~l~~~~~~--~~d~~~~~~~g~~~l~~l~~~----~~~~~~v~l~------------~~~~i~~~~w 203 (434)
..+.| .++|.. +++... ..+..+..+.|...|+.++.. +.....+.|. ..+...+++.
T Consensus 66 sGl~~~~~D~~grL-~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav 144 (334)
T 2p9w_A 66 SGLSLLTHDNSKRL-FAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ 144 (334)
T ss_dssp EEEEESSSSSCCEE-EEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred eEEEEeccCCCCcE-EEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence 57899 677554 443332 223334334455667777766 4333333432 1235789999
Q ss_pred CcCCCEEEEEEccCC-CeEEEEeccceeEEEc--C------CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013884 204 SYSGSEFAVVYGFMP-ASATIFNKKCRPILEL--G------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 271 (434)
Q Consensus 204 spdg~~~av~~g~~~-~~i~l~d~~~~~~~~~--~------~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~ 271 (434)
.++|+.++. +... +.|..++..+..+..+ . ....|-|+++|+|+.|++... .|.|.-+|+.+.
T Consensus 145 D~~GnaYVt--~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~---~g~L~~fD~~~p 216 (334)
T 2p9w_A 145 DRDGNSYVA--FALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG---PRALTAFDVSKP 216 (334)
T ss_dssp CTTSCEEEE--EEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS---SSSEEEEECSSS
T ss_pred CCCCCEEEe--CCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC---CCeEEEEcCCCC
Confidence 999998884 4555 7888888776543322 1 122568999999999988863 579999998754
No 294
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.38 E-value=0.75 Score=44.17 Aligned_cols=247 Identities=11% Similarity=0.147 Sum_probs=146.6
Q ss_pred eeeecCCCcEEEEe---cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013884 54 SIRFSSDEAVACRM---ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130 (434)
Q Consensus 54 ~~~~S~d~~~la~~---~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~ 130 (434)
.+.+..|--.|++- .+++|.|.|+.+........+. ..+.-++|. .+.+|+-. ...++|+++..
T Consensus 29 ~~TmESDkyicVrE~~~~~~~vvIiDl~~~~~~~rrpi~---AdsAIMnP~-~~iiALra------g~~lQiFnle~--- 95 (494)
T 1bpo_A 29 TLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPIS---ADSAIMNPA-SKVIALKA------GKTLQIFNIEM--- 95 (494)
T ss_dssp TEEEEETTEEEEEECCTTCCEEEEEETTSTTSCEEEECC---CSEEEECSS-SSCEEEEE------TTEEEEEETTT---
T ss_pred eeeeecCceEEEEecCCCCCeEEEEECCCCCcceecccc---cceeeeCCC-CcEEEEec------CCeEEEEchHH---
Confidence 34444444344443 2248999999886653222222 235567887 57777643 35899999988
Q ss_pred CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC-----CCCCeEEEEECc
Q 013884 131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-----KEGPVHDVQWSY 205 (434)
Q Consensus 131 ~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-----~~~~i~~~~wsp 205 (434)
.+.+....+ ..+++-.+|-.+.. |.+++ ++.+|.+++.+......-++ ....|-...-++
T Consensus 96 K~klks~~~-~e~VvfWkWis~~~-l~lVT-------------~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~ 160 (494)
T 1bpo_A 96 KSKMKAHTM-TDDVTFWKWISLNT-VALVT-------------DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA 160 (494)
T ss_dssp TEEEEEEEC-SSCCCEEEEEETTE-EEEEC-------------SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT
T ss_pred hhhhcceec-CCCceEEEecCCCe-EEEEc-------------CCeeEEecccCCCCchhheecchhcccceEEEEEECC
Confidence 677766665 34677778865533 44432 22467776665322211111 146788889999
Q ss_pred CCCEEEEEEc-----cCCCeEEEEeccceeEEEcCCcCeeEEEECCCC-----CeEEEEecCCCCCeEEEEEccCC----
Q 013884 206 SGSEFAVVYG-----FMPASATIFNKKCRPILELGSGPYNTVRWNPKG-----KFLCLAGFGNLPGDMAFWDYVDG---- 271 (434)
Q Consensus 206 dg~~~av~~g-----~~~~~i~l~d~~~~~~~~~~~~~~~~i~~sP~g-----~~l~~~~~~~~~g~i~iwd~~~~---- 271 (434)
+.++++++.= ...|.+.||..+.+...-+......-..+-.+| .+++.+......+++.|.++...
T Consensus 161 ~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~ 240 (494)
T 1bpo_A 161 KQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN 240 (494)
T ss_dssp TSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTC
T ss_pred CCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCC
Confidence 9999987521 134578899886544333322222223333333 35666665433479999987532
Q ss_pred ----EEEEEee-C-----CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec--ccceeeEEEc
Q 013884 272 ----KQLGTTR-A-----ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF--DKLFQAEWKP 334 (434)
Q Consensus 272 ----~~i~~~~-~-----~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~~~--~~~~~~~w~p 334 (434)
+....+. . .-++.+..|+.-..+..-+. -|-++++|+ +|.+++.... +.++-.+-..
T Consensus 241 ~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK------~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~ 310 (494)
T 1bpo_A 241 QPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK------YGYIHLYDLETGTCIYMNRISGETIFVTAPHE 310 (494)
T ss_dssp CCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET------TSEEEEEETTTCCEEEEEECCSSCEEEEEEET
T ss_pred CCccceeeeeeCCcccccCceeEEEecccCCEEEEEec------CceEEEEecccceeeeeecccCCceEEecccC
Confidence 2221111 1 13456888988888888888 789999999 7778877654 3444444443
No 295
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.35 E-value=0.89 Score=44.68 Aligned_cols=146 Identities=8% Similarity=-0.099 Sum_probs=73.3
Q ss_pred ceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc-CCCCCCeeee-------cCCCcEEEEecC-C--
Q 013884 3 LLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM-TKTTWPSIRF-------SSDEAVACRMAT-N-- 70 (434)
Q Consensus 3 ~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~-~~~~~~~~~~-------S~d~~~la~~~~-~-- 70 (434)
..|+|+| ++..|..+.+ ....|++.|+.++.. ..+..... .......++| ++++.+|..... +
T Consensus 142 ~~la~dp~~~~~Lyv~~~----~~~~i~~ID~~~~~v-~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~ 216 (496)
T 3kya_A 142 GRLAFDPLNKDHLYICYD----GHKAIQLIDLKNRML-SSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK 216 (496)
T ss_dssp EEEEEETTEEEEEEEEEE----TEEEEEEEETTTTEE-EEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred CEEEEccCCCCEEEEEEC----CCCeEEEEECCCCEE-EEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCC
Confidence 4689999 4555555442 235688889887654 44332211 0012336889 999986555532 2
Q ss_pred -----eEEEEeCCC-CCCce----eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC-------CCCCCCc
Q 013884 71 -----EIQFFDTTD-FPKGI----LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG-------KDLQSQP 133 (434)
Q Consensus 71 -----~i~v~~~~~-~~~~~----~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~-------~~~~~~~ 133 (434)
.|.+++... ..... ...........++++|+.+.++.+ . -..+.|..+++. +.....+
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvt-d----~~~g~V~r~d~~~~~~~~~tg~~~tp 291 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFN-S----YEKGQVFRLDLVDYFKTIKNGGSWDP 291 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEE-E----TTTTEEEEECHHHHHHHHHTTCCCCC
T ss_pred cccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEE-E----CCCCEEEEEecccccccccCceeecc
Confidence 366665332 11100 011123345667888863432221 1 123467777775 3110000
Q ss_pred --------eeee-eec-ccceeEEEECCCCCeEEE
Q 013884 134 --------LARR-SFF-RCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 134 --------i~~~-~~~-~~~~~~~~ws~~G~~l~~ 158 (434)
...+ ... ......++|+|+|+.|.+
T Consensus 292 ~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYv 326 (496)
T 3kya_A 292 IVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYF 326 (496)
T ss_dssp BGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEE
T ss_pred cccccccccceeEecCCCCCceEEEEcCCCCEEEE
Confidence 1111 111 122357999999996655
No 296
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.28 E-value=0.53 Score=44.23 Aligned_cols=114 Identities=12% Similarity=0.110 Sum_probs=71.2
Q ss_pred CCeEEEEECc--CCC-EEEEE-EccCCCeEEEEecc--cee---EEEcC---CcCeeEEEECCCCCeEEEEec--C----
Q 013884 196 GPVHDVQWSY--SGS-EFAVV-YGFMPASATIFNKK--CRP---ILELG---SGPYNTVRWNPKGKFLCLAGF--G---- 257 (434)
Q Consensus 196 ~~i~~~~wsp--dg~-~~av~-~g~~~~~i~l~d~~--~~~---~~~~~---~~~~~~i~~sP~g~~l~~~~~--~---- 257 (434)
...+.+.+.+ +|. ++.++ .+.....+.+|+++ +.. +.++. -...|.+...|+|++.++... .
T Consensus 112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~ 191 (355)
T 3sre_A 112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYL 191 (355)
T ss_dssp CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHH
T ss_pred eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCccc
Confidence 4677888766 454 34333 33234578887663 222 22332 234689999999998876531 1
Q ss_pred --------CCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884 258 --------NLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 258 --------~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~ 315 (434)
...|.|+.+|....+.+. -.-.....++|||||++|..+.+. .+.|..|+++
T Consensus 192 ~~~e~~~~~~~g~vyr~d~~~~~~~~-~~l~~pNGia~spDg~~lYvadt~-----~~~I~~~~~~ 251 (355)
T 3sre_A 192 KSWEMHLGLAWSFVTYYSPNDVRVVA-EGFDFANGINISPDGKYVYIAELL-----AHKIHVYEKH 251 (355)
T ss_dssp HHHHHHTTCCCEEEEEECTTCCEEEE-EEESSEEEEEECTTSSEEEEEEGG-----GTEEEEEEEC
T ss_pred ccchhhccCCccEEEEEECCeEEEee-cCCcccCcceECCCCCEEEEEeCC-----CCeEEEEEEC
Confidence 124677777764333221 111355569999999999998874 6788999985
No 297
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.27 E-value=1.2 Score=45.34 Aligned_cols=228 Identities=9% Similarity=-0.004 Sum_probs=123.7
Q ss_pred CcEEEEecCCeEEEEeCCCCCCceeeee-ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee
Q 013884 61 EAVACRMATNEIQFFDTTDFPKGILYRL-RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF 139 (434)
Q Consensus 61 ~~~la~~~~~~i~v~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~ 139 (434)
+.+|+....++|+..++..........+ .......++|++..+ .+ +|... ..+.|..+++.. .........
T Consensus 6 ~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~-~l-ywtD~---~~~~I~r~~~~g---~~~~~v~~~ 77 (628)
T 4a0p_A 6 EAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDN-RI-YWTDI---SLKTISRAFMNG---SALEHVVEF 77 (628)
T ss_dssp CCEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTT-EE-EEEET---TTTEEEEEETTS---CSCEEEECS
T ss_pred CcEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCC-EE-EEEEC---CCCeEEEEECCC---CCcEEEEeC
Confidence 4467777778999999876432111111 234577889998633 32 33322 224666666543 211111111
Q ss_pred cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC
Q 013884 140 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA 219 (434)
Q Consensus 140 ~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~ 219 (434)
.-.....++....+..|.+. .. +...|..++..|.....+....-....++++.|....+.+.--....
T Consensus 78 g~~~P~GlAvD~~~~~LY~t-D~----------~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~ 146 (628)
T 4a0p_A 78 GLDYPEGMAVDWLGKNLYWA-DT----------GTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKP 146 (628)
T ss_dssp SCSCCCEEEEETTTTEEEEE-ET----------TTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSC
T ss_pred CCCCcceEEEEeCCCEEEEE-EC----------CCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCC
Confidence 11122345555555555442 11 11245666666654333221223456899999976666653322356
Q ss_pred eEEEEeccceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEeeCCCceEEEECCCCCEEE
Q 013884 220 SATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTRAECSVTSEWSPDGRYFM 295 (434)
Q Consensus 220 ~i~l~d~~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~~~~~~~~~wspdg~~l~ 295 (434)
+|...++.+.....+ .-..-+.|+++++++.|..+..++ +.|+.+|++.. +.+.. ....+..++... .+|.
T Consensus 147 ~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~--~~I~~~d~dG~~~~v~~~-~l~~P~glav~~--~~ly 221 (628)
T 4a0p_A 147 KIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDT--NLIESSNMLGLNREVIAD-DLPHPFGLTQYQ--DYIY 221 (628)
T ss_dssp EEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTT--TEEEEEETTSCSCEEEEE-CCSCEEEEEEET--TEEE
T ss_pred EEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCC--CEEEEEcCCCCceEEeec-cCCCceEEEEEC--CEEE
Confidence 888888876544333 334568899999999888887654 68999998754 22221 222444566543 3555
Q ss_pred EEEcCCceeeCCcEEEEee-cCc
Q 013884 296 TATTAPRLQIDNGIKIFHH-NGS 317 (434)
Q Consensus 296 tas~~~rl~~D~~i~iw~~-~g~ 317 (434)
.+... .+.|...|. +|+
T Consensus 222 ~tD~~-----~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 222 WTDWS-----RRSIERANKTSGQ 239 (628)
T ss_dssp EEETT-----TTEEEEEETTTCC
T ss_pred EecCC-----CCEEEEEECCCCC
Confidence 54432 556666663 453
No 298
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.21 E-value=0.081 Score=49.89 Aligned_cols=142 Identities=11% Similarity=0.099 Sum_probs=80.2
Q ss_pred CeEEEEECcCCCEEEEEEccCCCeEEEEeccce-eEEEc-----CCcCeeEEEECCC---CCeEEEEecC-CCC----Ce
Q 013884 197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL-----GSGPYNTVRWNPK---GKFLCLAGFG-NLP----GD 262 (434)
Q Consensus 197 ~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~-~~~~~-----~~~~~~~i~~sP~---g~~l~~~~~~-~~~----g~ 262 (434)
....++|.|+|+.++ ...++.|.++|..+. .+..+ .....+.|+++|+ +..|.++... ..+ ..
T Consensus 30 ~P~~ia~~pdG~l~V---~e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLV---TERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp CEEEEEEEETTEEEE---EETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCeEEEEcCCCeEEE---EeCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 457899999997444 345589999986554 22222 2345688999998 5544444321 011 36
Q ss_pred EEEEEccCC-------EEE-EEee---CCCceEEEECCCCCEEEEEEcCCce-------eeCCcEEEEeecCc-------
Q 013884 263 MAFWDYVDG-------KQL-GTTR---AECSVTSEWSPDGRYFMTATTAPRL-------QIDNGIKIFHHNGS------- 317 (434)
Q Consensus 263 i~iwd~~~~-------~~i-~~~~---~~~~~~~~wspdg~~l~tas~~~rl-------~~D~~i~iw~~~g~------- 317 (434)
|..|+.... +.+ ..+. .|....+.|.|||..+++.+..-.. ...+.|.-.+.+|+
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 777876543 222 2222 2455569999999866664321000 01234555555665
Q ss_pred ---eeeeeecccceeeEEEcCCCCCCC
Q 013884 318 ---LFFKKMFDKLFQAEWKPVSPDKFG 341 (434)
Q Consensus 318 ---~~~~~~~~~~~~~~w~p~~~~~~~ 341 (434)
.++..-...-+.+.|.|+.-.+|.
T Consensus 187 ~~~~i~a~G~rnp~Gla~d~~~g~l~v 213 (354)
T 3a9g_A 187 PNSPIWSYGHRNPQGIDWHRASGVMVA 213 (354)
T ss_dssp TTCCEEEECCSCCCEEEECTTTCCEEE
T ss_pred CCCcEEEEccCCcceEEEeCCCCCEEE
Confidence 233333345567888885444554
No 299
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.21 E-value=0.71 Score=46.96 Aligned_cols=157 Identities=8% Similarity=-0.041 Sum_probs=98.1
Q ss_pred eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 013884 144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASAT 222 (434)
Q Consensus 144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~ 222 (434)
...+.|++.+..|.+. |... ..|+.+...+.......+. .-.....+++.+.++.+.+ +....+.|.
T Consensus 42 ~~~ld~~~~~~~ly~s-----D~~~------~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~-~d~~~~~I~ 109 (619)
T 3s94_A 42 AAAVDFVFSHGLIYWS-----DVSE------EAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYW-TDSETNRIE 109 (619)
T ss_dssp EEEEEEETTTTEEEEE-----ETTT------TEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEE-EETTTTEEE
T ss_pred eEEEEEEeCCCEEEEE-----ECCC------CeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEE-EeCCCCEEE
Confidence 4577888877776542 2111 1355555555421111111 1246788999997777776 455677999
Q ss_pred EEeccceeEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEeeCCCceEEEECCCCCEEEEE
Q 013884 223 IFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTRAECSVTSEWSPDGRYFMTA 297 (434)
Q Consensus 223 l~d~~~~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~~~~~~~~~wspdg~~l~ta 297 (434)
+.++++.....+ .-..-+.|++.|.+.+|..+..+ ..+.|+..+++.. +.+.......+..+++++++..|..+
T Consensus 110 v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g-~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~a 188 (619)
T 3s94_A 110 VSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWA 188 (619)
T ss_dssp EEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS-SSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEE
T ss_pred EEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC-CCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEE
Confidence 999987544333 22334689999987777777755 2467888887643 33332233466779999998888888
Q ss_pred EcCCceeeCCcEEEEeecCce
Q 013884 298 TTAPRLQIDNGIKIFHHNGSL 318 (434)
Q Consensus 298 s~~~rl~~D~~i~iw~~~g~~ 318 (434)
-.. .+.|...+++|..
T Consensus 189 D~~-----~~~I~~~~~dG~~ 204 (619)
T 3s94_A 189 DAK-----LNFIHKSNLDGTN 204 (619)
T ss_dssp ETT-----TCCEEEESSSCCE
T ss_pred eCC-----CCeEEEecCCCCc
Confidence 763 6778888888853
No 300
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.20 E-value=0.18 Score=47.42 Aligned_cols=139 Identities=12% Similarity=0.122 Sum_probs=76.8
Q ss_pred eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec----CCCCCeEEEEECcC---CCEEEEEEcc
Q 013884 144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL----RKEGPVHDVQWSYS---GSEFAVVYGF 216 (434)
Q Consensus 144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l----~~~~~i~~~~wspd---g~~~av~~g~ 216 (434)
-..|.|.|+|+ |++. . . .+ .|+.++..+. .....+ ...+....++++|+ +..|.+.+..
T Consensus 31 P~~ia~~pdG~-l~V~-e--~--~g-------~I~~~d~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~ 96 (354)
T 3a9g_A 31 PWSIAPLGGGR-YLVT-E--R--PG-------RLVLISPSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASY 96 (354)
T ss_dssp EEEEEEEETTE-EEEE-E--T--TT-------EEEEECSSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred CeEEEEcCCCe-EEEE-e--C--CC-------EEEEEeCCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEec
Confidence 35788999997 3332 1 1 12 2555543332 222111 12456889999998 6666654432
Q ss_pred --CC----CeEEEEeccce--------eEEE-cC---CcCeeEEEECCCCCeEEEEecC----------CCCCeEEEEEc
Q 013884 217 --MP----ASATIFNKKCR--------PILE-LG---SGPYNTVRWNPKGKFLCLAGFG----------NLPGDMAFWDY 268 (434)
Q Consensus 217 --~~----~~i~l~d~~~~--------~~~~-~~---~~~~~~i~~sP~g~~l~~~~~~----------~~~g~i~iwd~ 268 (434)
.+ ..|..|+.... .+.. +. ...-+.|.|.|||.+.++.+.. ...|.|.-+|.
T Consensus 97 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~ 176 (354)
T 3a9g_A 97 FAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDE 176 (354)
T ss_dssp ECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECT
T ss_pred cCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcC
Confidence 12 46777765432 1222 21 1234679999999866654321 12467777776
Q ss_pred cCC---------EEEEEeeCCCceEEEECC-CCCEEEE
Q 013884 269 VDG---------KQLGTTRAECSVTSEWSP-DGRYFMT 296 (434)
Q Consensus 269 ~~~---------~~i~~~~~~~~~~~~wsp-dg~~l~t 296 (434)
+.. ..+......+...++|+| +|+.+++
T Consensus 177 dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~ 214 (354)
T 3a9g_A 177 EGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVAT 214 (354)
T ss_dssp TSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEE
T ss_pred CCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEE
Confidence 532 123333334677799999 6665554
No 301
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.00 E-value=1.7 Score=44.61 Aligned_cols=77 Identities=12% Similarity=0.146 Sum_probs=50.4
Q ss_pred CeEEEEeccc-eeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC-c--eEEEECCCCCE
Q 013884 219 ASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC-S--VTSEWSPDGRY 293 (434)
Q Consensus 219 ~~i~l~d~~~-~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~-~--~~~~wspdg~~ 293 (434)
+.+.-||++. +.+-+. ...+.....+...|.++++++ .+|.|+.||.++++.+..+.... + .-+.+..+|+.
T Consensus 438 g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~---~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~ 514 (668)
T 1kv9_A 438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGT---AAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ 514 (668)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC---TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred ceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEEC---CcccchhhhhhcChhheEecCCCCcccCceEEEECCEE
Confidence 5788889854 433333 123333344556778888876 66899999999999988886542 1 22667788884
Q ss_pred -EEEEE
Q 013884 294 -FMTAT 298 (434)
Q Consensus 294 -l~tas 298 (434)
++.+.
T Consensus 515 yva~~~ 520 (668)
T 1kv9_A 515 YVAIMA 520 (668)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 44443
No 302
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.82 E-value=0.19 Score=47.26 Aligned_cols=98 Identities=13% Similarity=0.180 Sum_probs=60.1
Q ss_pred CeEEEEECcCCCEEEEEEccCCCeEEEEeccce--eEEEc-----CCcCeeEEEECCC---CCeEEEEecCCCC---CeE
Q 013884 197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--PILEL-----GSGPYNTVRWNPK---GKFLCLAGFGNLP---GDM 263 (434)
Q Consensus 197 ~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~--~~~~~-----~~~~~~~i~~sP~---g~~l~~~~~~~~~---g~i 263 (434)
.-..++|.|||+.++ ..+++.|.+++ .+. .+..+ .....+.|+|+|+ +..|.++...+.+ +.|
T Consensus 32 ~P~~ia~~pdG~l~V---~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 32 VPWALAFLPDGGMLI---AERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp CEEEEEECTTSCEEE---EETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CceEEEEcCCCeEEE---EeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 346899999998544 34568999987 432 22222 2345688999998 6655555432111 478
Q ss_pred EEEEccCC-----EE-EEEee-----CCCceEEEECCCCCEEEEEE
Q 013884 264 AFWDYVDG-----KQ-LGTTR-----AECSVTSEWSPDGRYFMTAT 298 (434)
Q Consensus 264 ~iwd~~~~-----~~-i~~~~-----~~~~~~~~wspdg~~l~tas 298 (434)
..++.... +. +..+. .|....++|+|||..+++.+
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 88887643 22 22233 13455699999997666543
No 303
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.73 E-value=0.2 Score=47.19 Aligned_cols=141 Identities=11% Similarity=0.102 Sum_probs=74.9
Q ss_pred eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeee------ecCCCCCeEEEEECcC---CCEEEEEE
Q 013884 144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV------PLRKEGPVHDVQWSYS---GSEFAVVY 214 (434)
Q Consensus 144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v------~l~~~~~i~~~~wspd---g~~~av~~ 214 (434)
-..|.|.|+|++|++. . ..+ .|+.++..+.....+ .....+....++|+|+ +..|.+.+
T Consensus 20 P~~i~~~pdG~~l~V~-e----~~G-------~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~ 87 (353)
T 2g8s_A 20 PWALAFLPDNHGMLIT-L----RGG-------ELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSY 87 (353)
T ss_dssp EEEEEECSTTCCEEEE-E----TTT-------EEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEE
T ss_pred cEEEEEcCCCCEEEEE-e----CCc-------eEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEE
Confidence 4588999999854442 1 122 255555433211111 1112456789999996 56666543
Q ss_pred ccC------CCeEEEEeccc--------eeEEE-cCC-----cCeeEEEECCCCCeEEEEecC----------CCCCeEE
Q 013884 215 GFM------PASATIFNKKC--------RPILE-LGS-----GPYNTVRWNPKGKFLCLAGFG----------NLPGDMA 264 (434)
Q Consensus 215 g~~------~~~i~l~d~~~--------~~~~~-~~~-----~~~~~i~~sP~g~~l~~~~~~----------~~~g~i~ 264 (434)
... ...|..|+... +.+.. +.. ..-..|.|.|||.+.++.+.. ...|.|.
T Consensus 88 ~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ 167 (353)
T 2g8s_A 88 SEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLV 167 (353)
T ss_dssp EEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEE
T ss_pred eCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEE
Confidence 321 12566665531 11221 221 123579999999755554321 1346788
Q ss_pred EEEccCC--------------EEEEEeeCCCceEEEECC-CCCEEEE
Q 013884 265 FWDYVDG--------------KQLGTTRAECSVTSEWSP-DGRYFMT 296 (434)
Q Consensus 265 iwd~~~~--------------~~i~~~~~~~~~~~~wsp-dg~~l~t 296 (434)
-+|.+.. ..+......+...++|+| +|+.+++
T Consensus 168 ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 168 RLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLN 214 (353)
T ss_dssp EEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEE
T ss_pred EECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEE
Confidence 8876532 122233333566799999 5655444
No 304
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=95.69 E-value=2.5 Score=44.11 Aligned_cols=109 Identities=15% Similarity=0.176 Sum_probs=68.5
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc
Q 013884 195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 268 (434)
Q Consensus 195 ~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~------~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~ 268 (434)
...|.++...++|+..+ |...+-+..||.+...+..+ ....+.++...++|++.+... .|-|..||.
T Consensus 494 ~~~i~~i~~d~~g~lWi---gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~----~Glv~~~d~ 566 (781)
T 3v9f_A 494 ENFVRSIAQDSEGRFWI---GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG----EGLVCFPSA 566 (781)
T ss_dssp CSCEEEEEECTTCCEEE---EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET----TEEEEESCT
T ss_pred cceeEEEEEcCCCCEEE---EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC----CCceEEECC
Confidence 35789999999887655 33334577888876555544 245678899999998665432 244488888
Q ss_pred cCCEEEEE--eeC---CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013884 269 VDGKQLGT--TRA---ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 318 (434)
Q Consensus 269 ~~~~~i~~--~~~---~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~ 318 (434)
++++...- ..+ ..+..+...++|+..++ + .++|..++.....
T Consensus 567 ~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~--t------~~Gl~~~~~~~~~ 613 (781)
T 3v9f_A 567 RNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAS--T------NTGISCYITSKKC 613 (781)
T ss_dssp TTCCCEEECGGGTCSCCCCCEEEECSSSCEEEE--C------SSCEEEEETTTTE
T ss_pred CCCcEEEccccCCCCCceEEEEEECCCCCEEEE--c------CCceEEEECCCCc
Confidence 76643221 111 23445788888886554 3 4566667665443
No 305
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=95.59 E-value=0.76 Score=42.52 Aligned_cols=110 Identities=12% Similarity=0.067 Sum_probs=73.8
Q ss_pred eEEEEE---CcCCCEEEEEEc-----------cCCCeEEEEecc----ceeEEEcC-----C----------cCeeEEEE
Q 013884 198 VHDVQW---SYSGSEFAVVYG-----------FMPASATIFNKK----CRPILELG-----S----------GPYNTVRW 244 (434)
Q Consensus 198 i~~~~w---spdg~~~av~~g-----------~~~~~i~l~d~~----~~~~~~~~-----~----------~~~~~i~~ 244 (434)
+..+.| .|+++.++++.. ..+..+..||+. ++.+.... . ...+.++.
T Consensus 65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav 144 (334)
T 2p9w_A 65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ 144 (334)
T ss_dssp EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence 478999 688766664321 024678999988 44443221 1 24789999
Q ss_pred CCCCCeEEEEecCCCCCeEEEEEccCCEEEEE-eeCC------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884 245 NPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT-TRAE------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 245 sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~-~~~~------~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~ 315 (434)
.++|+..++.+++. +.|...|.+......- .... ...-++++|||..|++... ++.+..+|+.
T Consensus 145 D~~GnaYVt~s~~~--~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~------~g~L~~fD~~ 214 (334)
T 2p9w_A 145 DRDGNSYVAFALGM--PAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG------PRALTAFDVS 214 (334)
T ss_dssp CTTSCEEEEEEESS--CEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS------SSSEEEEECS
T ss_pred CCCCCEEEeCCCCC--CeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC------CCeEEEEcCC
Confidence 99999888888661 4788777664422211 1111 2446999999999999988 7777877765
No 306
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.37 E-value=0.94 Score=42.34 Aligned_cols=142 Identities=9% Similarity=0.051 Sum_probs=76.9
Q ss_pred eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeee-ec-----CCCCCeEEEEECcC---CCEEEEEE
Q 013884 144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PL-----RKEGPVHDVQWSYS---GSEFAVVY 214 (434)
Q Consensus 144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l-----~~~~~i~~~~wspd---g~~~av~~ 214 (434)
-..|.|.|+|+.+ +. .. ..+ .|+.++..+.....+ .+ ...+....++++|+ +..|.+.+
T Consensus 34 P~~ia~~pdG~ll-Vt-er---~~G-------~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~y 101 (347)
T 3das_A 34 PWGLAPLPGGDLL-VS-SR---DEA-------TITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYF 101 (347)
T ss_dssp EEEEEECTTSCEE-EE-ET---TTC-------EEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEE
T ss_pred ceEEEEcCCCcEE-EE-Ee---cCC-------EEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEE
Confidence 3578999999843 32 11 122 255554332211111 11 22567899999995 44555433
Q ss_pred c-cCCCeEEEEeccc-----------eeEE-EcC---CcCeeEEEECCCCCeEEEEecC----------CCCCeEEEEEc
Q 013884 215 G-FMPASATIFNKKC-----------RPIL-ELG---SGPYNTVRWNPKGKFLCLAGFG----------NLPGDMAFWDY 268 (434)
Q Consensus 215 g-~~~~~i~l~d~~~-----------~~~~-~~~---~~~~~~i~~sP~g~~l~~~~~~----------~~~g~i~iwd~ 268 (434)
. .....|.-|.... +.+. .+. ...-..|.|.|||.+.++.|.. ...|.|.-.+.
T Consensus 102 t~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~ 181 (347)
T 3das_A 102 TSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTP 181 (347)
T ss_dssp ECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECT
T ss_pred ecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeC
Confidence 3 2334566664432 1222 222 1234569999999876664421 13567777776
Q ss_pred cCC---------EEEEEeeCCCceEEEECCCCCEEEEE
Q 013884 269 VDG---------KQLGTTRAECSVTSEWSPDGRYFMTA 297 (434)
Q Consensus 269 ~~~---------~~i~~~~~~~~~~~~wspdg~~l~ta 297 (434)
+.. ..+......+...++|+|+|+.+++=
T Consensus 182 dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d 219 (347)
T 3das_A 182 DGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASE 219 (347)
T ss_dssp TSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEE
T ss_pred CCCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEe
Confidence 532 12333333466779999998865543
No 307
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.37 E-value=2.2 Score=47.19 Aligned_cols=235 Identities=14% Similarity=0.117 Sum_probs=125.7
Q ss_pred CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeec
Q 013884 11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRV 90 (434)
Q Consensus 11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~ 90 (434)
.+|++.-+. .++..+|.|-|+.++..+..-.-.. + +.--.|..+.+|.-.+.+++||++....+.....+ .
T Consensus 35 Dkyicvre~--~~~~~~vvIidl~~~~~~~rrpi~A---d---sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~ 105 (1630)
T 1xi4_A 35 DKFICIREK--VGEQAQVVIIDMNDPSNPIRRPISA---D---SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-T 105 (1630)
T ss_pred CceEEEEec--CCCCceEEEEECCCCCCcccccccc---h---hhccCCCcceEEEecCCeEEEeehHHhhhhccccc-C
Confidence 456655442 2234578899998876553322221 1 22346777888877778999999987554333333 2
Q ss_pred CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee--ee--eecccceeEEEECCCCCeEEEEEEecccc
Q 013884 91 PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA--RR--SFFRCSTVQLNWNRGSTGLLAVAQSDVDK 166 (434)
Q Consensus 91 ~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~--~~--~~~~~~~~~~~ws~~G~~l~~~~~~~~d~ 166 (434)
+.|..-.|-.. ..+++.+. ..|.-|++... ..|+. .+ +.....++...-+++.++++++.-...+.
T Consensus 106 e~VvfWkWis~--~~l~lVT~------~aVyHW~~~~~--s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~ 175 (1630)
T 1xi4_A 106 DDVTFWKWISL--NTVALVTD------NAVYHWSMEGE--SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQN 175 (1630)
T ss_pred CCceEEEecCC--CeeEEEcC------CeEEEeccCCC--CccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCC
Confidence 45666666542 34555433 35788888542 23322 11 12246677788899999988776543343
Q ss_pred cCceeecceeEEEEeeCCCceeeeecCCCCCeE---EEEE---CcCCCEEEEEEc-cCCCeEEEEeccce----eEEE--
Q 013884 167 TNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVH---DVQW---SYSGSEFAVVYG-FMPASATIFNKKCR----PILE-- 233 (434)
Q Consensus 167 ~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~---~~~w---spdg~~~av~~g-~~~~~i~l~d~~~~----~~~~-- 233 (434)
... |...||.++- ..... + +|..- ++.. .+....|++... ...+++.|.++... +.+.
T Consensus 176 ~v~---G~mQLyS~er--~~sQ~--i--egha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk 246 (1630)
T 1xi4_A 176 RVV---GAMQLYSVDR--KVSQP--I--EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKK 246 (1630)
T ss_pred ccc---ceeeeeeccc--ccchh--h--hHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccc
Confidence 332 6666665532 11111 1 11110 0111 122234443222 11247777776321 1111
Q ss_pred -----cC----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE
Q 013884 234 -----LG----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT 276 (434)
Q Consensus 234 -----~~----~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~ 276 (434)
|. ...-..+..|+.-..+.+.+ ..|.|+++|+.++.++..
T Consensus 247 ~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~it---k~G~~~~~d~~t~~~i~~ 295 (1630)
T 1xi4_A 247 AVDVFFPPEAQNDFPVAMQISEKHDVVFLIT---KYGYIHLYDLETGTCIYM 295 (1630)
T ss_pred cccccCCcccccCcceEEEeccccCEEEEEe---cCceEEEEecccchhhhh
Confidence 11 12223566677666666665 557999999999876654
No 308
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=95.35 E-value=1.8 Score=40.36 Aligned_cols=113 Identities=14% Similarity=0.202 Sum_probs=76.3
Q ss_pred CCeEEEEE--CcC-CCEEEEEEccCCCeEEEEecc--------ceeEEEcC-CcCeeEEEECCCCCeEEEEecCCCCCeE
Q 013884 196 GPVHDVQW--SYS-GSEFAVVYGFMPASATIFNKK--------CRPILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDM 263 (434)
Q Consensus 196 ~~i~~~~w--spd-g~~~av~~g~~~~~i~l~d~~--------~~~~~~~~-~~~~~~i~~sP~g~~l~~~~~~~~~g~i 263 (434)
..++.++. +|. ++.++++.+ .++.+..|++. .+.+.+|. .+....|...+....|.++--+ -.|
T Consensus 128 ~~pyGlcly~~~~~g~~yafV~~-k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd---~GI 203 (355)
T 3amr_A 128 NEVYGFTLYHSQKTGKYYAMVTG-KEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEED---EAI 203 (355)
T ss_dssp SSCCCEEEEECTTTCCEEEEEEC-SSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETT---TEE
T ss_pred CCeeEEEEEecCCCCcEEEEEEC-CCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEeccc---ceE
Confidence 45667888 775 555666554 45888887762 34456663 4567788888988888888743 358
Q ss_pred EEEEcc-----CCEEEEEeeCC----CceEEEE--CCCCC-EEEEEEcCCceeeCCcEEEEeecCc
Q 013884 264 AFWDYV-----DGKQLGTTRAE----CSVTSEW--SPDGR-YFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 264 ~iwd~~-----~~~~i~~~~~~----~~~~~~w--spdg~-~l~tas~~~rl~~D~~i~iw~~~g~ 317 (434)
..+|.+ +++.+..+... .+-.++. .++|+ ||++++.. ++.+.||+..+.
T Consensus 204 w~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG-----~~s~~Vydr~~~ 264 (355)
T 3amr_A 204 WKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQG-----NSSYAIYDRQGK 264 (355)
T ss_dssp EEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGG-----GTEEEEEESSTT
T ss_pred EEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCC-----CCEEEEEECCCC
Confidence 888865 45677665432 3334666 67777 78777754 789999999653
No 309
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.26 E-value=1 Score=43.79 Aligned_cols=143 Identities=10% Similarity=0.138 Sum_probs=77.1
Q ss_pred eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeC-CCceeeeecC-------CCCCeEEEEECcC---CCEEEE
Q 013884 144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD-GTHEGLVPLR-------KEGPVHDVQWSYS---GSEFAV 212 (434)
Q Consensus 144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~-~~~~~~v~l~-------~~~~i~~~~wspd---g~~~av 212 (434)
-..|.|.|+|+.+ +. . ..+ ..|+.++.. +.......+. .++.+..++|+|| +..|.+
T Consensus 29 P~~~a~~pdG~l~-V~-e----~~g------g~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv 96 (454)
T 1cru_A 29 PHALLWGPDNQIW-LT-E----RAT------GKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI 96 (454)
T ss_dssp EEEEEECTTSCEE-EE-E----TTT------CEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred ceEEEEcCCCcEE-EE-E----cCC------CEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEE
Confidence 3578999999843 32 1 111 125555432 2222222222 2466789999996 666666
Q ss_pred EEccC-----------CCeEEEEeccc--------eeEEE-cC---CcCeeEEEECCCCCeEEEEecC-C----------
Q 013884 213 VYGFM-----------PASATIFNKKC--------RPILE-LG---SGPYNTVRWNPKGKFLCLAGFG-N---------- 258 (434)
Q Consensus 213 ~~g~~-----------~~~i~l~d~~~--------~~~~~-~~---~~~~~~i~~sP~g~~l~~~~~~-~---------- 258 (434)
.+... ...|..|+... +.+.+ +. ...-+.|.|.|||.+.++.|.. +
T Consensus 97 ~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~ 176 (454)
T 1cru_A 97 SGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPN 176 (454)
T ss_dssp EEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCC
T ss_pred EEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCcccccccc
Confidence 55320 12455554421 12222 22 2345789999999966664431 1
Q ss_pred ------------------CCCeEEEEEccCC------------EEEEEeeCCCceEEEECCCCCEEEEEE
Q 013884 259 ------------------LPGDMAFWDYVDG------------KQLGTTRAECSVTSEWSPDGRYFMTAT 298 (434)
Q Consensus 259 ------------------~~g~i~iwd~~~~------------~~i~~~~~~~~~~~~wspdg~~l~tas 298 (434)
..|.|.-+|.+.. ..+......++..++|+|+|+.+++-.
T Consensus 177 ~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~L~~~d~ 246 (454)
T 1cru_A 177 QAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGKLLQSEQ 246 (454)
T ss_dssp CTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSCEEEEEE
T ss_pred ccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCCCEEEEec
Confidence 2366666665432 123333333666799999988665543
No 310
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=95.18 E-value=3.1 Score=42.16 Aligned_cols=136 Identities=8% Similarity=0.010 Sum_probs=86.1
Q ss_pred eEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc---CCcCeeEEEECCCCCeEE
Q 013884 176 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLC 252 (434)
Q Consensus 176 ~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~---~~~~~~~i~~sP~g~~l~ 252 (434)
.|+.+...+.....+....-+....+++.+.++.+.+ +....+.|.+.++++.....+ .-..-+.|++.|...+|.
T Consensus 372 ~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~-tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly 450 (619)
T 3s94_A 372 AIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYW-TDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMY 450 (619)
T ss_dssp EEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEE-EETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEE
T ss_pred eEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEE-EeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEE
Confidence 3566666654322222111245568888876777766 455567999999876544333 233457899999866666
Q ss_pred EEecCCCCCeEEEEEccCC--EEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013884 253 LAGFGNLPGDMAFWDYVDG--KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 318 (434)
Q Consensus 253 ~~~~~~~~g~i~iwd~~~~--~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~ 318 (434)
.+..+. .+.|+..+++.. +.+..-.-..+..++.++++..|..+-.. .+.|...+++|..
T Consensus 451 ~tD~g~-~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~-----~~~I~~~~~dG~~ 512 (619)
T 3s94_A 451 WTDWGE-IPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAK-----TDKIEVMNTDGTG 512 (619)
T ss_dssp EEECSS-SCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETT-----TTEEEEEESSSCC
T ss_pred EecCCC-CCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECC-----CCEEEEEecCCCc
Confidence 666542 467888877643 22322122366679999998888888763 4568888888764
No 311
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.68 E-value=1.5 Score=41.01 Aligned_cols=137 Identities=10% Similarity=0.075 Sum_probs=76.1
Q ss_pred CeEEEEECcCCCEEEEEEccCCCeEEEEeccce---eEEEc------CCcCeeEEEECCC---CCeEEEE-ecCCCCCeE
Q 013884 197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR---PILEL------GSGPYNTVRWNPK---GKFLCLA-GFGNLPGDM 263 (434)
Q Consensus 197 ~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~---~~~~~------~~~~~~~i~~sP~---g~~l~~~-~~~~~~g~i 263 (434)
....++|.|||+.|+ +....++|.+++.... .+..+ +.+....|+++|+ ..+|.+. +.. ....|
T Consensus 33 ~P~~ia~~pdG~llV--ter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~-~~~~v 109 (347)
T 3das_A 33 SPWGLAPLPGGDLLV--SSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA-SDNRI 109 (347)
T ss_dssp SEEEEEECTTSCEEE--EETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS-SSEEE
T ss_pred CceEEEEcCCCcEEE--EEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC-CCCEE
Confidence 457899999998666 3333789999976422 22222 2455688999996 3444332 211 22356
Q ss_pred EEEEccC----------CEEEE-Eee---CCCceEEEECCCCCEEEEEEcCCc------e-eeCCcEEEEeecCc-----
Q 013884 264 AFWDYVD----------GKQLG-TTR---AECSVTSEWSPDGRYFMTATTAPR------L-QIDNGIKIFHHNGS----- 317 (434)
Q Consensus 264 ~iwd~~~----------~~~i~-~~~---~~~~~~~~wspdg~~l~tas~~~r------l-~~D~~i~iw~~~g~----- 317 (434)
.-|.... .+.+. .+. .|....+.|.|||..+++.+..-. + ..-+.|.-.+.+|.
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n 189 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN 189 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence 6665543 23322 232 355566999999987776542110 0 01234444455554
Q ss_pred -----eeeeeecccceeeEEEcCC
Q 013884 318 -----LFFKKMFDKLFQAEWKPVS 336 (434)
Q Consensus 318 -----~~~~~~~~~~~~~~w~p~~ 336 (434)
.++..-....+.+.|.|.+
T Consensus 190 Pf~~~~i~a~G~RNp~Gla~dp~G 213 (347)
T 3das_A 190 PFPGSPVYSYGHRNVQGLAWDDKQ 213 (347)
T ss_dssp SSTTCCEEEBCCSBCCEEEECTTC
T ss_pred CCCCCeEEeeCCCCcceEEECCCC
Confidence 2333333456778888854
No 312
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.66 E-value=2.6 Score=46.69 Aligned_cols=235 Identities=11% Similarity=0.164 Sum_probs=131.5
Q ss_pred eeeecCCCcEEEEe---cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013884 54 SIRFSSDEAVACRM---ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130 (434)
Q Consensus 54 ~~~~S~d~~~la~~---~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~ 130 (434)
.+.+..|-=.+++- .+++|.|.|+.+........+. ..+..++|. .+.||+-. ..+++|+++..
T Consensus 29 ~~T~eSDkyicvre~~~~~~~vvIidl~~~~~~~rrpi~---AdsAIMnP~-~~iiALra------g~~lQiFnl~~--- 95 (1630)
T 1xi4_A 29 TLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPIS---ADSAIMNPA-SKVIALKA------GKTLQIFNIEM--- 95 (1630)
T ss_pred ceeeecCceEEEEecCCCCceEEEEECCCCCCccccccc---chhhccCCC-cceEEEec------CCeEEEeehHH---
Confidence 34444444344443 2248999999886542222222 234456776 56777632 35899999987
Q ss_pred CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceee------eecCCCCCeEEEEEC
Q 013884 131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL------VPLRKEGPVHDVQWS 204 (434)
Q Consensus 131 ~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~------v~l~~~~~i~~~~ws 204 (434)
.+.+....+ ..+++-.+|-.+.+ |.+++. +.+|.+++.+..... ..+. ...|-...-+
T Consensus 96 k~klks~~~-~e~VvfWkWis~~~-l~lVT~-------------~aVyHW~~~~~s~P~k~fdR~~~L~-~~QIinY~~d 159 (1630)
T 1xi4_A 96 KSKMKAHTM-TDDVTFWKWISLNT-VALVTD-------------NAVYHWSMEGESQPVKMFDRHSSLA-GCQIINYRTD 159 (1630)
T ss_pred hhhhccccc-CCCceEEEecCCCe-eEEEcC-------------CeEEEeccCCCCccHHHHhcchhcc-cCeeEEeeeC
Confidence 666666555 34677778866544 444332 236666665532111 1122 4577788889
Q ss_pred cCCCEEEEEE-----ccCCCeEEEEeccceeEEEc--CCcCeeEEEE---CCCCCeEEEEecCCCCCeEEEEEccCC---
Q 013884 205 YSGSEFAVVY-----GFMPASATIFNKKCRPILEL--GSGPYNTVRW---NPKGKFLCLAGFGNLPGDMAFWDYVDG--- 271 (434)
Q Consensus 205 pdg~~~av~~-----g~~~~~i~l~d~~~~~~~~~--~~~~~~~i~~---sP~g~~l~~~~~~~~~g~i~iwd~~~~--- 271 (434)
++.++++++. |...|.+.+|..+.+....+ |.+...++.. .+....++.+......|++.|-++...
T Consensus 160 ~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~ 239 (1630)
T 1xi4_A 160 AKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG 239 (1630)
T ss_pred CCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccC
Confidence 9999998752 22456889998754332222 2222222221 122345565544323368888887432
Q ss_pred ------EEEEEe-e----CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeee
Q 013884 272 ------KQLGTT-R----AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKM 323 (434)
Q Consensus 272 ------~~i~~~-~----~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~~ 323 (434)
+.+..+ . ..-++.+..|+.-..+..-|. -|-+.++|+ +|.+++...
T Consensus 240 ~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk------~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 240 NQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK------YGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred CCCCccccccccCCcccccCcceEEEeccccCEEEEEec------CceEEEEecccchhhhhcc
Confidence 111111 0 113345677777777777777 788999998 666666543
No 313
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=94.14 E-value=3.7 Score=38.27 Aligned_cols=51 Identities=12% Similarity=0.242 Sum_probs=32.8
Q ss_pred CCCCeeeecCCCc-EEEEecCCeEEEEeCCCCCCceeeee------ecCCeeEEEEeCC
Q 013884 50 TTWPSIRFSSDEA-VACRMATNEIQFFDTTDFPKGILYRL------RVPGVAAFEVSKA 101 (434)
Q Consensus 50 ~~~~~~~~S~d~~-~la~~~~~~i~v~~~~~~~~~~~~~~------~~~~v~~~~~sp~ 101 (434)
..| .++|.|||+ ++++-..+.|++++...........+ ...+...++++|+
T Consensus 19 ~P~-~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pd 76 (353)
T 2g8s_A 19 HPW-ALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPD 76 (353)
T ss_dssp SEE-EEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTT
T ss_pred CcE-EEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCC
Confidence 345 899999999 88777778999998532100000111 1235788999995
No 314
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=93.59 E-value=5.3 Score=38.23 Aligned_cols=129 Identities=10% Similarity=0.136 Sum_probs=73.9
Q ss_pred CCcEEEEEcCCCcEEEEEeecC-cCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCC----------ceeeeeec---
Q 013884 25 EKNVILWKTETGEAVYQLFQKN-MTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPK----------GILYRLRV--- 90 (434)
Q Consensus 25 d~~v~iWd~~~g~~~~~~~~~~-~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~----------~~~~~~~~--- 90 (434)
++.||.=++..+..-+.+.... ..-..+..+..||+|++||..+..+|+|-.++.... ......++
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~ 119 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE 119 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCc
Confidence 3445555665443223333321 001245678999999999999999999999983221 11112222
Q ss_pred -----CCeeEEEEeCCCC--CeEEEEecCCCCCCceEEEEEcCCCCCCCce-eee--eecc-----cceeEEEECCCCCe
Q 013884 91 -----PGVAAFEVSKAPG--SHVAVFVPESKGSPASVQIYACGKDLQSQPL-ARR--SFFR-----CSTVQLNWNRGSTG 155 (434)
Q Consensus 91 -----~~v~~~~~sp~~~--~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i-~~~--~~~~-----~~~~~~~ws~~G~~ 155 (434)
..|..+.|+|-+. ..+.+.. .++.|++|++.... ..+. ..+ ..|. .++.+++|..+|=.
T Consensus 120 ~~~~~s~I~qVlWHPl~~~ds~LVVLt-----sD~~Ir~yDl~~s~-~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lT 193 (452)
T 3pbp_A 120 EVGPKSSIKKVLFHPKSYRDSCIVVLK-----EDDTITMFDILNSQ-EKPIVLNKPNNSFGLDARVNDITDLEFSKDGLT 193 (452)
T ss_dssp C--CCCCEEEEEECTTBGGGCEEEEEE-----TTSCEEEEETTCTT-SCCEEESCCCSEEESCSSCCCEEEEEECTTSSC
T ss_pred ccCCCCceeEEEeccccCCCCeEEEEe-----cCCEEEEEEcccCC-CCCcchhccccccCCCcccceEEEEEEcCCCcE
Confidence 3589999999753 3444433 34689999997521 2333 101 1122 46677778776655
Q ss_pred EEEE
Q 013884 156 LLAV 159 (434)
Q Consensus 156 l~~~ 159 (434)
|.++
T Consensus 194 LYvl 197 (452)
T 3pbp_A 194 LYCL 197 (452)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 315
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=93.59 E-value=4.3 Score=37.21 Aligned_cols=96 Identities=9% Similarity=0.097 Sum_probs=54.7
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc--C----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEE
Q 013884 195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--G----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD 267 (434)
Q Consensus 195 ~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~--~----~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd 267 (434)
...++.+.++|+++.+++ + .++.+.+.+.. +..-..+ . ...+..+.|.|++++++++. +|.| ++.
T Consensus 204 ~~~~~~~~~~~~g~~~~~--~-~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~----~g~i-~~S 275 (327)
T 2xbg_A 204 SRRLHNMGFTPDGRLWMI--V-NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG----AGAL-LCS 275 (327)
T ss_dssp SSCEEEEEECTTSCEEEE--E-TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES----TTCE-EEE
T ss_pred CCccceeEECCCCCEEEE--e-CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC----CCeE-EEe
Confidence 567889999999876653 3 35666665322 2211111 1 12467899999888877664 3456 444
Q ss_pred ccCCEEEEEee-----CCCceEEEECCCCCEEEEEEc
Q 013884 268 YVDGKQLGTTR-----AECSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 268 ~~~~~~i~~~~-----~~~~~~~~wspdg~~l~tas~ 299 (434)
.+.++.-.... ......+.|.++++.+ .++.
T Consensus 276 ~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~-~~G~ 311 (327)
T 2xbg_A 276 QDGGQTWQQDVDVKKVPSNFYKILFFSPDQGF-ILGQ 311 (327)
T ss_dssp SSTTSSCEECGGGTTSSSCCCEEEEEETTEEE-EECS
T ss_pred CCCCcccEEcCccCCCCCCeEEEEEECCCceE-EEcC
Confidence 55443332222 1244557887666644 4444
No 316
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.40 E-value=2.7 Score=40.85 Aligned_cols=100 Identities=11% Similarity=0.152 Sum_probs=58.3
Q ss_pred CeEEEEECcCCCEEEEEEccCCC-eEEEEecc-c--eeEEEcC--------CcCeeEEEECCC---CCeEEEEecC----
Q 013884 197 PVHDVQWSYSGSEFAVVYGFMPA-SATIFNKK-C--RPILELG--------SGPYNTVRWNPK---GKFLCLAGFG---- 257 (434)
Q Consensus 197 ~i~~~~wspdg~~~av~~g~~~~-~i~l~d~~-~--~~~~~~~--------~~~~~~i~~sP~---g~~l~~~~~~---- 257 (434)
....++|.|+|+.|+ +.+.+ .|.+++.. + ..+..+. .+....|+|+|+ +.+|.++...
T Consensus 28 ~P~~~a~~pdG~l~V---~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 28 KPHALLWGPDNQIWL---TERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SEEEEEECTTSCEEE---EETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CceEEEEcCCCcEEE---EEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 446999999998666 34454 78888753 2 2233332 244568999996 5555444321
Q ss_pred --CC----CCeEEEEEccCC-------EEEE-Eee---CCCceEEEECCCCCEEEEEEc
Q 013884 258 --NL----PGDMAFWDYVDG-------KQLG-TTR---AECSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 258 --~~----~g~i~iwd~~~~-------~~i~-~~~---~~~~~~~~wspdg~~l~tas~ 299 (434)
.. ...|.-++.... +.+. .+. .|....+.|.|||..+++.+.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 00 135666665421 2222 222 356667999999987776554
No 317
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=93.29 E-value=7.5 Score=39.02 Aligned_cols=78 Identities=18% Similarity=0.228 Sum_probs=48.0
Q ss_pred CCeEEEEecc-ceeEEEcC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCc-e--EEEECCCCC
Q 013884 218 PASATIFNKK-CRPILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECS-V--TSEWSPDGR 292 (434)
Q Consensus 218 ~~~i~l~d~~-~~~~~~~~-~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~-~--~~~wspdg~ 292 (434)
.+.+.-||++ ++.+-+.. ..+...-.....|.++++++ .+|.++.||.++++.+..++.... . -+.|..||+
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~---~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~ 541 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGT---GDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE 541 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEEC---TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEEC---CCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCE
Confidence 3577888875 34433331 12222111122466777776 568999999999999988876522 2 277888998
Q ss_pred EEEEEE
Q 013884 293 YFMTAT 298 (434)
Q Consensus 293 ~l~tas 298 (434)
.++...
T Consensus 542 qYv~~~ 547 (582)
T 1flg_A 542 QYLGVT 547 (582)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 554443
No 318
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=93.17 E-value=5.4 Score=37.11 Aligned_cols=197 Identities=12% Similarity=0.113 Sum_probs=103.4
Q ss_pred cEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCC---CCCeE-EEEecCCCCCCceEEEEEcCCCCCCCceeee
Q 013884 62 AVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKA---PGSHV-AVFVPESKGSPASVQIYACGKDLQSQPLARR 137 (434)
Q Consensus 62 ~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~~~i-a~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~ 137 (434)
.+|++...+.|.+||+.. . ....+....+..+.+-|+ ++..+ ..+..+......+|++|++... ..++...
T Consensus 42 ~ii~t~k~~gL~Vydl~G-~--~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~--~~~l~~i 116 (355)
T 3amr_A 42 KLITTNKKSGLVVYSLDG-K--MLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGK--NGTLQSM 116 (355)
T ss_dssp EEEEEETTTEEEEEETTS-C--EEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTT--TCCEEEC
T ss_pred EEEEEcCCCCEEEEcCCC-c--EEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCC--CCceeec
Confidence 355555667999999943 2 223344445666655552 11111 2233332211468999988421 2234333
Q ss_pred eec----c---cceeEEEE--CCC-CCeEEEEEEecccccCceeecceeEEEEeeCCC------ceeeeecCCCCCeEEE
Q 013884 138 SFF----R---CSTVQLNW--NRG-STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT------HEGLVPLRKEGPVHDV 201 (434)
Q Consensus 138 ~~~----~---~~~~~~~w--s~~-G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~------~~~~v~l~~~~~i~~~ 201 (434)
... . .....++. ++. |...+++. ++.+ ....|.+...+. ....+.+ .+.+..+
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~----~k~G-----~~~q~~l~~~~~g~~~~~lVR~f~l--gsq~Egc 185 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVT----GKEG-----EFEQYELKADKNGYISGKKVRAFKM--NSQTEGM 185 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEE----CSSS-----EEEEEEEEECTTSCEEEEEEEEEEC--SSCEEEE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEE----CCCC-----eEEEEEEEeCCCCcccceEEEEecC--CCCcceE
Confidence 110 0 12223333 664 44333332 2222 222343432211 1122333 5678888
Q ss_pred EECcCCCEEEEEEccCCCeEEEEecc------ceeEEEcCC----cCeeEEEE--CCCCC-eEEEEecCCCCCeEEEEEc
Q 013884 202 QWSYSGSEFAVVYGFMPASATIFNKK------CRPILELGS----GPYNTVRW--NPKGK-FLCLAGFGNLPGDMAFWDY 268 (434)
Q Consensus 202 ~wspdg~~~av~~g~~~~~i~l~d~~------~~~~~~~~~----~~~~~i~~--sP~g~-~l~~~~~~~~~g~i~iwd~ 268 (434)
+..+...++.+ +.++.-|+.||.+ ...+..+.. ..+.-|++ .++|+ ||++++-++ ..+.+||+
T Consensus 186 vvDd~~g~Lyv--~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~--~s~~Vydr 261 (355)
T 3amr_A 186 AADDEYGRLYI--AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN--SSYAIYDR 261 (355)
T ss_dssp EEETTTTEEEE--EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG--TEEEEEES
T ss_pred EEcCCCCeEEE--ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC--CEEEEEEC
Confidence 88887777775 6667778888865 223433322 23455555 77887 777776554 68999999
Q ss_pred c-CCEEEEEee
Q 013884 269 V-DGKQLGTTR 278 (434)
Q Consensus 269 ~-~~~~i~~~~ 278 (434)
+ +.+.+..+.
T Consensus 262 ~~~~~~vg~f~ 272 (355)
T 3amr_A 262 QGKNKYVADFR 272 (355)
T ss_dssp STTCCEEEEEE
T ss_pred CCCCcEEEEEE
Confidence 7 677777764
No 319
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=93.13 E-value=8.1 Score=38.95 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=40.2
Q ss_pred CCeEEEEEccCCEEEEEeeCCC-ceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec
Q 013884 260 PGDMAFWDYVDGKQLGTTRAEC-SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF 324 (434)
Q Consensus 260 ~g~i~iwd~~~~~~i~~~~~~~-~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~~~ 324 (434)
.|.|.-||+.+++.+....... ...-.....|..++.++. |+.++.||. +|+++.+...
T Consensus 452 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~------dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 452 LGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTL------DGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECT------TSEEEEEETTTCCEEEEEEC
T ss_pred cCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECC------CCeEEEEECCCCCEEEEeeC
Confidence 4789999999998887775331 111112235666777877 999999997 7887766543
No 320
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=92.99 E-value=6.6 Score=37.59 Aligned_cols=146 Identities=10% Similarity=0.108 Sum_probs=81.2
Q ss_pred cCCCcEEEEecCCeEEEEeCCCCCCceeeeee----cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-CC-
Q 013884 58 SSDEAVACRMATNEIQFFDTTDFPKGILYRLR----VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL-QS- 131 (434)
Q Consensus 58 S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~----~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-~~- 131 (434)
..+|.-++...+++||.-++.+.......++. ...+..+.+||+ +.++|++.+ ..|.|..+|... ..
T Consensus 29 ~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSps-G~lLAl~g~------~~V~Vv~LP~~~~~~~ 101 (452)
T 3pbp_A 29 SQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTS-GDLLCLFND------NEIFVMEVPWGYSNVE 101 (452)
T ss_dssp ETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTT-SSEEEEECS------SEEEEEECCTTCSCCC
T ss_pred EcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCC-CCEEEEecC------CeEEEEEecCccccCc
Confidence 34667777777788888777643322222222 335788999998 677877632 367777777311 00
Q ss_pred -----Cceeeeeec--------ccceeEEEECCCC---CeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC--
Q 013884 132 -----QPLARRSFF--------RCSTVQLNWNRGS---TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-- 193 (434)
Q Consensus 132 -----~~i~~~~~~--------~~~~~~~~ws~~G---~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-- 193 (434)
..+..+++. ...+.++.|+|-| ..|++++ .|...+.|. +....+....+.
T Consensus 102 ~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt---sD~~Ir~yD---------l~~s~~~P~~L~k~ 169 (452)
T 3pbp_A 102 DVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK---EDDTITMFD---------ILNSQEKPIVLNKP 169 (452)
T ss_dssp CHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE---TTSCEEEEE---------TTCTTSCCEEESCC
T ss_pred ccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe---cCCEEEEEE---------cccCCCCCcchhcc
Confidence 111112221 3568899999964 4676665 444454432 111111111111
Q ss_pred --------CCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 013884 194 --------KEGPVHDVQWSYSGSEFAVVYGFMPASAT 222 (434)
Q Consensus 194 --------~~~~i~~~~wspdg~~~av~~g~~~~~i~ 222 (434)
....|.+++|.+++-.+.+.+...+|.|+
T Consensus 170 ~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIY 206 (452)
T 3pbp_A 170 NNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIF 206 (452)
T ss_dssp CSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEE
T ss_pred ccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEE
Confidence 12578899999988777765544455554
No 321
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=92.87 E-value=8.6 Score=38.57 Aligned_cols=59 Identities=22% Similarity=0.282 Sum_probs=40.6
Q ss_pred CCeEEEEEccCCEEEEEeeCCCce-EEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec
Q 013884 260 PGDMAFWDYVDGKQLGTTRAECSV-TSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF 324 (434)
Q Consensus 260 ~g~i~iwd~~~~~~i~~~~~~~~~-~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~~~ 324 (434)
.|.|.-||+.+++.+......... .-.....|..+++++. |+.++.||. +|+++.+...
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~------dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTG------DGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECT------TSEEEEEETTTCCEEEEEEC
T ss_pred cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECC------CCcEEEEECCCCCEEEEecC
Confidence 578999999999888776543211 1111224566777877 999999997 7887766543
No 322
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=92.57 E-value=11 Score=38.93 Aligned_cols=254 Identities=9% Similarity=0.009 Sum_probs=123.5
Q ss_pred eEE-ecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEE-EEeecCcCCC------CCCeeeecCCCcEEEEe-------c
Q 013884 4 LLT-CLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVY-QLFQKNMTKT------TWPSIRFSSDEAVACRM-------A 68 (434)
Q Consensus 4 ~l~-fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~-~~~~~~~~~~------~~~~~~~S~d~~~la~~-------~ 68 (434)
.+. |||||++++..--..+++-..++++|+.+++.+. .|. .. .+. ....++|.+++.++++. .
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~-~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~ 210 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PI-TNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEIT 210 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CB-CTTCCBCCEETCCEEEEETTEEEECCCCSTTCBC
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cc-cccccccccccceeeEECCCEEEEEeCCCCCCcC
Confidence 344 9999999886543445555789999999997763 222 10 001 11234888666666542 1
Q ss_pred ----CCeEEEEeCCCCCCc--eeeeeecCCe-eEEEEeCCCCC---eEEEEecCCCCCCceEEEEEcCCCCCCCceeeee
Q 013884 69 ----TNEIQFFDTTDFPKG--ILYRLRVPGV-AAFEVSKAPGS---HVAVFVPESKGSPASVQIYACGKDLQSQPLARRS 138 (434)
Q Consensus 69 ----~~~i~v~~~~~~~~~--~~~~~~~~~v-~~~~~sp~~~~---~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~ 138 (434)
...|+.|...+.... .+.......+ .....++++.. .+.+... .......+.+.+.... ..++..+.
T Consensus 211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~--~~~~~~l~ 287 (711)
T 4hvt_A 211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISAN-KDFYNYDNYILDTKYK--NLKLQKIN 287 (711)
T ss_dssp TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEE-SSSSCEEEEEEECSSS--SCEEEECC
T ss_pred cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEe-cccCceeEEEEcCCCC--CCcceEee
Confidence 137888887654221 1222222222 23344555443 1222221 1122244455444321 12222221
Q ss_pred ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCC---------ceeeeecCCCCCeEEEEECcCCCE
Q 013884 139 FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT---------HEGLVPLRKEGPVHDVQWSYSGSE 209 (434)
Q Consensus 139 ~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~---------~~~~v~l~~~~~i~~~~wspdg~~ 209 (434)
.. ....+.++.+| .+++.+.++.+..+.. +....|..++.... ....+.-.....+.++.|..+.
T Consensus 288 ~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 361 (711)
T 4hvt_A 288 MP--SDATLQGSFKE-YVFWLLRSDWKFKSHN-IKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKDR-- 361 (711)
T ss_dssp SC--TTCEEEEEETT-EEEEECSSCEEETTEE-ECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSSC--
T ss_pred cC--CcceEeeeECC-EEEEEECccccccccc-CCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECCE--
Confidence 11 12233445554 4444332222111111 12234666655432 1112333334567789998763
Q ss_pred EEEEEccCCC--eEEEEeccce--eE---EEcC-CcCeeEEEECCCCCeE-EEEecCCCCCeEEEEEcc
Q 013884 210 FAVVYGFMPA--SATIFNKKCR--PI---LELG-SGPYNTVRWNPKGKFL-CLAGFGNLPGDMAFWDYV 269 (434)
Q Consensus 210 ~av~~g~~~~--~i~l~d~~~~--~~---~~~~-~~~~~~i~~sP~g~~l-~~~~~~~~~g~i~iwd~~ 269 (434)
+++. ...++ .+.++|+... .+ ..+. .+.+..+..++++..+ +..+.-...+.++.+|..
T Consensus 362 l~~~-~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 362 VFLA-TYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEE-EEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEE-EEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 4332 33344 6777887433 12 2243 3556667777887644 444433457899999987
No 323
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=92.47 E-value=2.1 Score=42.50 Aligned_cols=118 Identities=14% Similarity=0.231 Sum_probs=79.4
Q ss_pred CeEEEEECcCCCEEEEEEccCCCeEEEEeccc-------ee-------EE--EcCCcCeeEEEECCCCCeEEEEecCCCC
Q 013884 197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-------RP-------IL--ELGSGPYNTVRWNPKGKFLCLAGFGNLP 260 (434)
Q Consensus 197 ~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-------~~-------~~--~~~~~~~~~i~~sP~g~~l~~~~~~~~~ 260 (434)
..|.+..+|||+++++ .|--..++.++|.+. +. +. +++.+| ...+|.++| ...+.-| ++
T Consensus 324 sPHGv~vsPDGkyi~v-~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGP-lHt~Fd~~G-~aYTtlf--id 398 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIA-AGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGP-LHTTFDGRG-NAYTTLF--ID 398 (638)
T ss_dssp SCCCEEECTTSCEEEE-ECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCE-EEEEECSSS-EEEEEET--TT
T ss_pred CCcceeeCCCCCEEEE-cCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcc-cEEEECCCC-ceEeeee--ec
Confidence 4578999999999987 577778999999752 10 11 123444 346899999 4445444 45
Q ss_pred CeEEEEEccCC----------EEEEEeeCC-CceEEEE------CCCCCEEEEEEcCCceee-------CCcEEEEeecC
Q 013884 261 GDMAFWDYVDG----------KQLGTTRAE-CSVTSEW------SPDGRYFMTATTAPRLQI-------DNGIKIFHHNG 316 (434)
Q Consensus 261 g~i~iwd~~~~----------~~i~~~~~~-~~~~~~w------spdg~~l~tas~~~rl~~-------D~~i~iw~~~g 316 (434)
.+|.-|++... ..+..+.-| .+-++.- .|||++|++.....+-|. -..-++.|++|
T Consensus 399 SqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsG 478 (638)
T 3sbq_A 399 SQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISG 478 (638)
T ss_dssp TEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSS
T ss_pred ceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCC
Confidence 69999998742 456666555 3444443 799999999987554221 12468999999
Q ss_pred cee
Q 013884 317 SLF 319 (434)
Q Consensus 317 ~~~ 319 (434)
..+
T Consensus 479 dkM 481 (638)
T 3sbq_A 479 DEM 481 (638)
T ss_dssp SSC
T ss_pred Cce
Confidence 743
No 324
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=91.92 E-value=9.5 Score=37.05 Aligned_cols=96 Identities=13% Similarity=0.119 Sum_probs=53.9
Q ss_pred CCCeEEEEECcC---CCEEEEEEccC-C----------CeEEEEecc-----------ceeEEEc----CCcCeeEEEEC
Q 013884 195 EGPVHDVQWSYS---GSEFAVVYGFM-P----------ASATIFNKK-----------CRPILEL----GSGPYNTVRWN 245 (434)
Q Consensus 195 ~~~i~~~~wspd---g~~~av~~g~~-~----------~~i~l~d~~-----------~~~~~~~----~~~~~~~i~~s 245 (434)
++....|+++|+ ...|.+.+... + ..|.-|.+. .+.+.++ ....-..|.|.
T Consensus 68 e~Gllgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fg 147 (463)
T 2wg3_C 68 ERGLLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFG 147 (463)
T ss_dssp CCSEEEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEEC
T ss_pred CCcceeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeEC
Confidence 457789999996 34455444321 1 133334332 1223333 12335679999
Q ss_pred CCCCeEEEEecCC--------------CCCeEEEEEccCC---------------------EEEEEeeCCCceEEEECCC
Q 013884 246 PKGKFLCLAGFGN--------------LPGDMAFWDYVDG---------------------KQLGTTRAECSVTSEWSPD 290 (434)
Q Consensus 246 P~g~~l~~~~~~~--------------~~g~i~iwd~~~~---------------------~~i~~~~~~~~~~~~wspd 290 (434)
|||.+.++.|... ..|.|.-.|.+.. ..|...-..++..++|.|.
T Consensus 148 pDG~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~ 227 (463)
T 2wg3_C 148 PDGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRH 227 (463)
T ss_dssp TTSCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESS
T ss_pred CCCcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCC
Confidence 9998666655321 2466666666541 1344444446777999997
No 325
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=90.00 E-value=19 Score=37.02 Aligned_cols=239 Identities=10% Similarity=-0.025 Sum_probs=112.4
Q ss_pred ecCCCcEEEEe-c---C--CeEEEEeCCCCCCceeeeeecCC----------eeEEEEeCCCCCeEEEE---ec---CCC
Q 013884 57 FSSDEAVACRM-A---T--NEIQFFDTTDFPKGILYRLRVPG----------VAAFEVSKAPGSHVAVF---VP---ESK 114 (434)
Q Consensus 57 ~S~d~~~la~~-~---~--~~i~v~~~~~~~~~~~~~~~~~~----------v~~~~~sp~~~~~ia~~---~~---~~~ 114 (434)
++||+++++.+ + . .+|+++|+.+.... .-.+. +. ...++|-.+ +. +.+. -+ ...
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~-~~~~~-~~~k~~~~~~~~~~~~~W~d~-~~-~~~~~~~~~~~~~~~ 212 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFV-KNGFE-PITNSGKLLEGKFTYPTWINK-DT-IIFNLVLHKNEITSS 212 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEEC-TTCSC-CBCTTCCBCCEETCCEEEEET-TE-EEECCCCSTTCBCTT
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcC-CCCcc-cccccccccccccceeeEECC-CE-EEEEeCCCCCCcCcC
Confidence 89999998876 2 1 28999998764311 01111 11 133477633 22 2221 11 123
Q ss_pred CCCceEEEEEcCCCCCCCceeeeeec--ccc-eeEEEECCCCCeE---EEEEEecccccCceeecceeEEEEeeCCCcee
Q 013884 115 GSPASVQIYACGKDLQSQPLARRSFF--RCS-TVQLNWNRGSTGL---LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG 188 (434)
Q Consensus 115 ~~~~~v~i~~~~~~~~~~~i~~~~~~--~~~-~~~~~ws~~G~~l---~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~ 188 (434)
+.+..|+.|.+-+ ...-...-+. ..+ .+...-+.++.+. +++... .+.. ...+|+++.......
T Consensus 213 ~~~~~v~~~~~Gt---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~------~~~~~~~~~~~~~~~ 282 (711)
T 4hvt_A 213 LYPNSLYIWKRGE---SIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISAN-KDFY------NYDNYILDTKYKNLK 282 (711)
T ss_dssp SSBCEEEEEETTS---CGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEE-SSSS------CEEEEEEECSSSSCE
T ss_pred CCCCEEEEEECCC---ChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEe-cccC------ceeEEEEcCCCCCCc
Confidence 4567899999854 1111111111 111 2334456677752 232211 1211 134666665421112
Q ss_pred eeecCCCCCeEEEEECcCCCEEEEEEcc---------CCCeEEEEeccce--------eEEE-c---CCcCeeEEEECCC
Q 013884 189 LVPLRKEGPVHDVQWSYSGSEFAVVYGF---------MPASATIFNKKCR--------PILE-L---GSGPYNTVRWNPK 247 (434)
Q Consensus 189 ~v~l~~~~~i~~~~wspdg~~~av~~g~---------~~~~i~l~d~~~~--------~~~~-~---~~~~~~~i~~sP~ 247 (434)
.+.+..... ..+.+++++..++. ... ..++|...|+... .... + ....+..+.|..+
T Consensus 283 ~~~l~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 360 (711)
T 4hvt_A 283 LQKINMPSD-ATLQGSFKEYVFWL-LRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD 360 (711)
T ss_dssp EEECCSCTT-CEEEEEETTEEEEE-CSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS
T ss_pred ceEeecCCc-ceEeeeECCEEEEE-ECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC
Confidence 233332222 22345566644442 211 2347888887531 1122 2 2345667888876
Q ss_pred CCeEEEEecCCCCCeEEEEEccCCE-EEEE---eeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884 248 GKFLCLAGFGNLPGDMAFWDYVDGK-QLGT---TRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 248 g~~l~~~~~~~~~g~i~iwd~~~~~-~i~~---~~~-~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~ 315 (434)
.++++.. .+....|.++|+.+++ .+.. +.. ..+..+..++++..++...+++.. -..+..++..
T Consensus 361 -~l~~~~~-~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~--P~~~~~~d~~ 429 (711)
T 4hvt_A 361 -RVFLATY-DNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIV--PPTIYLWVKT 429 (711)
T ss_dssp -CEEEEEE-ETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSS--CCEEEEECTT
T ss_pred -EEEEEEE-ECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCC--CCEEEEEeCC
Confidence 3444333 3333568889887764 1222 222 233346777887655544332211 3445555554
No 326
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=88.52 E-value=3.6 Score=35.64 Aligned_cols=92 Identities=10% Similarity=0.107 Sum_probs=59.3
Q ss_pred CeEEEEECcCCCEEEEEEccCCCeEEEEeccc-------eeEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEE
Q 013884 197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-------RPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW 266 (434)
Q Consensus 197 ~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-------~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iw 266 (434)
.+.+++|+|+|..++| ..+++.-.+... ..-..+ +-....++.|.|+|.+.++ . +|.|+-+
T Consensus 42 ~~~~laf~P~G~LYaV----~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~----dG~iyr~ 112 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV----LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-S----KDKLYKA 112 (236)
T ss_dssp TCSEEEECTTSCEEEE----ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-E----TTEEEEE
T ss_pred cceeEEECCCccEEEE----eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe-C----CCEEEEe
Confidence 5679999999997776 245666665522 111112 2122578999999998887 3 2789888
Q ss_pred EccC---------CEEEEEeeCCCceEEEECCCCCEEEEE
Q 013884 267 DYVD---------GKQLGTTRAECSVTSEWSPDGRYFMTA 297 (434)
Q Consensus 267 d~~~---------~~~i~~~~~~~~~~~~wspdg~~l~ta 297 (434)
+.-+ ..++....-.....+.+.|+|...+..
T Consensus 113 ~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 113 SPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH 152 (236)
T ss_dssp SCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred CCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence 7532 133333222355569999999988776
No 327
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=86.14 E-value=26 Score=33.96 Aligned_cols=100 Identities=12% Similarity=0.118 Sum_probs=57.7
Q ss_pred eEEEEECcCCC-EEEEEEccCCCeEEEEeccce----eEEEcC-----------CcCeeEEEECCC----CCeEEEEecC
Q 013884 198 VHDVQWSYSGS-EFAVVYGFMPASATIFNKKCR----PILELG-----------SGPYNTVRWNPK----GKFLCLAGFG 257 (434)
Q Consensus 198 i~~~~wspdg~-~~av~~g~~~~~i~l~d~~~~----~~~~~~-----------~~~~~~i~~sP~----g~~l~~~~~~ 257 (434)
-..|+|.|||. ++.| ..+.+.|++++..+. .+..+. ......|+|+|+ +.+.++-+..
T Consensus 16 P~~~a~~pdG~~rl~V--~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFI--LEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp EEEEECCSSSSCCEEE--EETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred ceEEEECCCCCeEEEE--EeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 46899999996 4444 356789999975432 222221 245567999996 4433332211
Q ss_pred CC-------C--CeEEEEEcc----------CCEEEEEee----CCCceEEEECCCCCEEEEEEc
Q 013884 258 NL-------P--GDMAFWDYV----------DGKQLGTTR----AECSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 258 ~~-------~--g~i~iwd~~----------~~~~i~~~~----~~~~~~~~wspdg~~l~tas~ 299 (434)
.. + ..|.-|.+. +.+.|..+. .|....|.|.|||..+++.+.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 10 0 134334442 123443332 356667999999987777665
No 328
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=84.53 E-value=23 Score=32.13 Aligned_cols=128 Identities=13% Similarity=0.213 Sum_probs=72.9
Q ss_pred CCCCeEEEEECcCCCEEEEEEccCCCeEEEEec--c-ceeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013884 194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK--K-CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD 270 (434)
Q Consensus 194 ~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~--~-~~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~ 270 (434)
..+.++++++.|++..+++ +....-.+..|. + ...+.......+..+.++|+|++++++ ..|.+++.+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~--g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~----~~G~~~~s~~D~ 234 (327)
T 2xbg_A 161 AIGVMRNLNRSPSGEYVAV--SSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIV----NGGKIAFSDPDN 234 (327)
T ss_dssp CCCCEEEEEECTTSCEEEE--ETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEE----TTTEEEEEETTE
T ss_pred CCcceEEEEEcCCCcEEEE--ECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEe----CCceEEEecCCC
Confidence 3567899999999877763 433223333343 1 122222234567889999999877654 346777764333
Q ss_pred CEEEEEeeC------CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeeee-----cccceeeEEEcC
Q 013884 271 GKQLGTTRA------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKKM-----FDKLFQAEWKPV 335 (434)
Q Consensus 271 ~~~i~~~~~------~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~~~-----~~~~~~~~w~p~ 335 (434)
++.-..+.. ..+..+.+.|+++.++++. ++.+ .+..+ |+...... ...++.+.|.+.
T Consensus 235 G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-------~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~ 303 (327)
T 2xbg_A 235 SENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-------AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSP 303 (327)
T ss_dssp EEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-------TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEET
T ss_pred CCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-------CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECC
Confidence 443333321 1355688999888776654 5555 33444 33333222 235777877643
No 329
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=80.64 E-value=30 Score=30.61 Aligned_cols=79 Identities=8% Similarity=0.070 Sum_probs=42.1
Q ss_pred CeEEEEeccceeEEEcC---CcC--eeEEEECCCCCeEEEEecCCC--CCeEEEEEccCCEEEEE--eeCCCceEEEECC
Q 013884 219 ASATIFNKKCRPILELG---SGP--YNTVRWNPKGKFLCLAGFGNL--PGDMAFWDYVDGKQLGT--TRAECSVTSEWSP 289 (434)
Q Consensus 219 ~~i~l~d~~~~~~~~~~---~~~--~~~i~~sP~g~~l~~~~~~~~--~g~i~iwd~~~~~~i~~--~~~~~~~~~~wsp 289 (434)
..+.+||.....-..+. ... ...+.+ +++++++||.+.. ...+++||..+.+-... ............-
T Consensus 175 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 252 (301)
T 2vpj_A 175 NSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL 252 (301)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred ceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE
Confidence 36888998755544332 111 122233 6777788876432 35799999987743322 2222111112222
Q ss_pred CCCEEEEEEc
Q 013884 290 DGRYFMTATT 299 (434)
Q Consensus 290 dg~~l~tas~ 299 (434)
+++.++.++.
T Consensus 253 ~~~i~v~GG~ 262 (301)
T 2vpj_A 253 RGRLYAIAGY 262 (301)
T ss_dssp TTEEEEECCB
T ss_pred CCEEEEEcCc
Confidence 6677676665
No 330
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=80.25 E-value=5.9 Score=42.39 Aligned_cols=38 Identities=8% Similarity=0.097 Sum_probs=33.0
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEee
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQ 44 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~ 44 (434)
|.++..+++..||.|.+ .|+++|||++.+|+++.+...
T Consensus 238 ~~~~~~~~~~~~lftl~-----~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 238 IISMIFLSTYNVLVMLS-----LDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp EEEEEEETTTTEEEEEE-----TTCEEEEEETTTTEEEEEEEC
T ss_pred EEEEeecCCCcEEEEEE-----CCCEEEEEECCCCCeEeeecc
Confidence 45677888999999999 899999999999999987654
No 331
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=78.64 E-value=3.3 Score=41.10 Aligned_cols=69 Identities=16% Similarity=0.189 Sum_probs=49.3
Q ss_pred eEEEECCCCCeEEEEecCCCCCeEEEEEccCC------E-------EEEEee-CCCceEEEECCCCCEEEEEEcCCceee
Q 013884 240 NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG------K-------QLGTTR-AECSVTSEWSPDGRYFMTATTAPRLQI 305 (434)
Q Consensus 240 ~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~------~-------~i~~~~-~~~~~~~~wspdg~~l~tas~~~rl~~ 305 (434)
..+..+|||++++++|. +..++.++|.+.. + .+...+ +....+.+|.++| ...|.- -+
T Consensus 326 HGv~vsPDGkyi~v~GK--LsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTtl-----fi 397 (638)
T 3sbq_A 326 HGCNTSSDGKYFIAAGK--LSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRG-NAYTTL-----FI 397 (638)
T ss_dssp CCEEECTTSCEEEEECT--TSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSS-EEEEEE-----TT
T ss_pred cceeeCCCCCEEEEcCC--CCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCC-ceEeee-----ee
Confidence 45889999999999875 4579999998742 1 133332 3377889999999 333332 23
Q ss_pred CCcEEEEeecC
Q 013884 306 DNGIKIFHHNG 316 (434)
Q Consensus 306 D~~i~iw~~~g 316 (434)
|..|.-|++..
T Consensus 398 dSqvvkWni~~ 408 (638)
T 3sbq_A 398 DSQVVKWNMEE 408 (638)
T ss_dssp TTEEEEEEHHH
T ss_pred cceEEEEeccH
Confidence 99999999844
No 332
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=75.44 E-value=43 Score=29.55 Aligned_cols=54 Identities=11% Similarity=0.196 Sum_probs=31.2
Q ss_pred CeEEEEeccceeEEEcC---CcCeeEEEECCCCCeEEEEecCCCC--CeEEEEEccCCE
Q 013884 219 ASATIFNKKCRPILELG---SGPYNTVRWNPKGKFLCLAGFGNLP--GDMAFWDYVDGK 272 (434)
Q Consensus 219 ~~i~l~d~~~~~~~~~~---~~~~~~i~~sP~g~~l~~~~~~~~~--g~i~iwd~~~~~ 272 (434)
..+.+||.+...-..+. ..........-+++++++||.+... ..|++||.++.+
T Consensus 222 ~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 222 SSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred ceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 36889998765544442 1111111222267788888765322 478889987763
No 333
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=74.79 E-value=16 Score=36.29 Aligned_cols=63 Identities=16% Similarity=0.184 Sum_probs=43.3
Q ss_pred eEEEECCCCCeEEEEecC--C-------CCCeEEEEEccCCEEEEEeeCC---CceEEEECCCCCEEEEEEcCCc
Q 013884 240 NTVRWNPKGKFLCLAGFG--N-------LPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPDGRYFMTATTAPR 302 (434)
Q Consensus 240 ~~i~~sP~g~~l~~~~~~--~-------~~g~i~iwd~~~~~~i~~~~~~---~~~~~~wspdg~~l~tas~~~r 302 (434)
+.|.|.++|.+.+....+ + ....|+.++..+++....+..+ .++-++||||++.|.++...|.
T Consensus 479 DnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQHPG 553 (592)
T 4a9v_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQHPG 553 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEESTT
T ss_pred CceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEeCCC
Confidence 569999999977643211 0 1126778888788665555443 3455999999999999887553
No 334
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=73.41 E-value=50 Score=33.78 Aligned_cols=36 Identities=6% Similarity=0.019 Sum_probs=29.8
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEee
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQ 44 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~ 44 (434)
|.++.+ +.+||+|.+ .|+.+||||+.+++++.+...
T Consensus 224 Is~~~~--~~~fLftL~-----~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKLF--HERYLIVLT-----QNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE--TTTEEEEEE-----TTCEEEEEETTTTEEEEEEET
T ss_pred EEEecc--CCcEEEEEE-----cCCeEEEEEcCCCceEEeecc
Confidence 444444 588999999 899999999999999887765
No 335
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=68.34 E-value=4.8 Score=44.08 Aligned_cols=39 Identities=8% Similarity=0.095 Sum_probs=32.8
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeec
Q 013884 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQK 45 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~ 45 (434)
|.++..+++.+||.|.+ .|+++|||++.+|+++.+....
T Consensus 240 ~vs~~~~~~~~~lftL~-----~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLS-----LDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp BSCCEEETTTTEEEEEB-----TTCEEEEEETTTTEEEEEEECC
T ss_pred eEEeeccCCccEEEEEe-----CCCEEEEEECCCCCeEEeechh
Confidence 34566778899999999 8999999999999999886543
No 336
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=67.61 E-value=19 Score=36.00 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=40.4
Q ss_pred EEEECCCCCeEEEEecCC---------CCCeEEEEEccCCEEEEEeeCC---CceEEEECCCCCEEEEEEcCC
Q 013884 241 TVRWNPKGKFLCLAGFGN---------LPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPDGRYFMTATTAP 301 (434)
Q Consensus 241 ~i~~sP~g~~l~~~~~~~---------~~g~i~iwd~~~~~~i~~~~~~---~~~~~~wspdg~~l~tas~~~ 301 (434)
-|.|+|+|++++.-..+. ....+.+.+..+++...-+..+ .++-+.|+|||+.|.+...-|
T Consensus 480 NL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvniQHP 552 (592)
T 3zwu_A 480 GLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQHP 552 (592)
T ss_dssp EEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEEST
T ss_pred ceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEEECC
Confidence 489999999666533211 1134666677777655555444 444599999999999887644
No 337
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=66.51 E-value=25 Score=30.38 Aligned_cols=86 Identities=8% Similarity=0.048 Sum_probs=51.8
Q ss_pred CeeEEEECCCCCeEEEEecCCCCCeEEEEEccC---------CEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCc
Q 013884 238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD---------GKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNG 308 (434)
Q Consensus 238 ~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~---------~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~ 308 (434)
.+..++|+|+|.+.++ . .|+++-.+..+ ...|....-..-..+.|.|+|.+.++ + |+.
T Consensus 42 ~~~~laf~P~G~LYaV-~----~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~------dG~ 108 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-L----NDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--S------KDK 108 (236)
T ss_dssp TCSEEEECTTSCEEEE-E----TTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--E------TTE
T ss_pred cceeEEECCCccEEEE-e----CCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--C------CCE
Confidence 5669999999997777 3 25777777644 13333221123345899999998887 5 776
Q ss_pred EEEEee--cC--------ceeeeeecccceeeEEEcCC
Q 013884 309 IKIFHH--NG--------SLFFKKMFDKLFQAEWKPVS 336 (434)
Q Consensus 309 i~iw~~--~g--------~~~~~~~~~~~~~~~w~p~~ 336 (434)
|.-++- ++ ..+-..-..++-.+.+.|++
T Consensus 109 iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G 146 (236)
T 1tl2_A 109 LYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNG 146 (236)
T ss_dssp EEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTS
T ss_pred EEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCc
Confidence 655554 11 23333333556666666654
No 338
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=63.13 E-value=12 Score=37.50 Aligned_cols=61 Identities=15% Similarity=0.086 Sum_probs=36.3
Q ss_pred eEEecCCCcEEEEEecCCCC--------CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe
Q 013884 4 LLTCLRVGLIIQTFQKSSTP--------QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM 67 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~--------~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~ 67 (434)
-|.|+|+|+.++. +..... ....+.+.+..+|+..+-+.... ...+..+.|+||++.|...
T Consensus 480 NL~fd~~G~LwI~-eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~--gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 480 GLGFDKAGRLWIL-TDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI--GCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEECTTCCEEEE-ECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT--TCEEEEEEECTTSSEEEEE
T ss_pred ceEECCCCCEEEE-ecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC--CccCcCeeECCCCCEEEEE
Confidence 3789999996554 321110 11234555666777544444332 2566689999999877554
No 339
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=61.43 E-value=43 Score=25.09 Aligned_cols=61 Identities=10% Similarity=0.058 Sum_probs=33.0
Q ss_pred CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCC
Q 013884 11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD 79 (434)
Q Consensus 11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~ 79 (434)
|.|.+... .|+++.||+...+..+..-..... .... .+.+..||.+++.-.++.+ +|....
T Consensus 24 g~~~L~~q-----~dGNLvL~~~~~~~~vWssnt~~~-~~~~-~l~l~~dGNLVl~d~~~~~-iW~S~t 84 (113)
T 3mez_B 24 RDYSLVMR-----DDCNLVLTKGSKTNIVWESGTSGR-GQHC-FMRLGHSGELDITDDRLNT-VFVSNT 84 (113)
T ss_dssp TTEEEEEC-----TTSCEEEEETTTTEEEEECCCTTS-CSSC-EEEECTTSCEEEECTTSCE-EEECSC
T ss_pred CCEEEEEc-----CCCEEEEEECCCCEEEEECCcccC-CcCE-EEEEeCCCcEEEECCCCCE-EEECCC
Confidence 55555555 678888887543454443221110 0112 4667777777776544443 676544
No 340
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=60.25 E-value=2e+02 Score=31.41 Aligned_cols=71 Identities=7% Similarity=-0.022 Sum_probs=41.4
Q ss_pred cceEEecCC------CcEEEEEecCCCCC-CCcEEEEEcCCCcEEEEEeecCc-CCCCCCeeeecCCCcEEEEe-cCCeE
Q 013884 2 LLLLTCLRV------GLIIQTFQKSSTPQ-EKNVILWKTETGEAVYQLFQKNM-TKTTWPSIRFSSDEAVACRM-ATNEI 72 (434)
Q Consensus 2 V~~l~fSP~------g~~L~t~~~~~~~~-d~~v~iWd~~~g~~~~~~~~~~~-~~~~~~~~~~S~d~~~la~~-~~~~i 72 (434)
|.|++++|. +.+++.+. . |++|+|+++.+.+.+........ ....+..+.+ ...-+|..+ .+|.+
T Consensus 556 vscl~i~~~~~~~~~s~~~aVg~-----~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~-~~~~~L~igl~dG~l 629 (1158)
T 3ei3_A 556 VACLDITPLGDSNGLSPLCAIGL-----WTDISARILKLPSFELLHKEMLGGEIIPRSILMTTF-ESSHYLLCALGDGAL 629 (1158)
T ss_dssp EEEEECCCCSSSTTCCSEEEEEE-----TTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEE-TTEEEEEEEETTSEE
T ss_pred eEEEEeecCCCCcccccEEEEEE-----CCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEe-CCCcEEEEEeCCCeE
Confidence 678888864 36888877 5 89999999998777654332210 0011212233 223455544 56776
Q ss_pred EEEeCC
Q 013884 73 QFFDTT 78 (434)
Q Consensus 73 ~v~~~~ 78 (434)
..+.++
T Consensus 630 ~~~~~d 635 (1158)
T 3ei3_A 630 FYFGLN 635 (1158)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 666543
No 341
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=58.92 E-value=94 Score=27.30 Aligned_cols=110 Identities=10% Similarity=0.031 Sum_probs=56.0
Q ss_pred CEEEEEEccC-CCeEEEEeccceeEEEcC---CcCeeEEEECCCCCeEEEEecCC-CCCeEEEEEccCCEE--EEEeeCC
Q 013884 208 SEFAVVYGFM-PASATIFNKKCRPILELG---SGPYNTVRWNPKGKFLCLAGFGN-LPGDMAFWDYVDGKQ--LGTTRAE 280 (434)
Q Consensus 208 ~~~av~~g~~-~~~i~l~d~~~~~~~~~~---~~~~~~i~~sP~g~~l~~~~~~~-~~g~i~iwd~~~~~~--i~~~~~~ 280 (434)
..+.++-|.. ...+.+||.....-..+. ..........-+++++++||.+. ....+.+||..+.+- +......
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 4455543432 347888998765544432 11111112223677777777541 235799999888743 3333222
Q ss_pred CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884 281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 281 ~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~ 317 (434)
........-+++.++.++....-..-+.+.+||....
T Consensus 92 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 128 (306)
T 3ii7_A 92 RDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTE 128 (306)
T ss_dssp CBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTT
T ss_pred ccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCC
Confidence 2212222236777777775211112356777776443
No 342
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=56.18 E-value=51 Score=35.18 Aligned_cols=38 Identities=11% Similarity=0.085 Sum_probs=31.5
Q ss_pred CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee
Q 013884 238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR 278 (434)
Q Consensus 238 ~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~ 278 (434)
.+.++...++..++++-. .++++++|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~---~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLS---LDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEE---TTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEE---CCCEEEEEECCCCCeEeeec
Confidence 457788888888998888 55699999999999888754
No 343
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1
Probab=52.12 E-value=74 Score=24.01 Aligned_cols=61 Identities=8% Similarity=0.117 Sum_probs=33.9
Q ss_pred cCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCC
Q 013884 8 LRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTT 78 (434)
Q Consensus 8 SP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~ 78 (434)
||+|.|-+... .|+++.+++- +..+..-.... ...-..+.+..||.+++.-.++. .+|...
T Consensus 27 S~~g~~~L~~~-----~dgnlvly~~--~~~vW~sn~~~--~~~~~~l~l~~dGNLVl~d~~~~-~lW~S~ 87 (119)
T 1b2p_A 27 FGTHVYRFIMQ-----TDCNLVLYDN--NNPIWATNTGG--LGNGCRAVLQPDGVLVVITNENV-TVWQSP 87 (119)
T ss_dssp ETTEEEEEEEC-----TTSCEEEEET--TEEEEECCCTT--SCSSCEEEECTTSCEEEECTTCC-EEEECS
T ss_pred CCCCCEEEEEe-----cCCCEEEEEC--CEEEEeCCCcc--CCCceEEEEccCCEEEEEeCCCc-EEEcCC
Confidence 77777777766 5778877763 44443321111 01111466777777776654333 467654
No 344
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=51.78 E-value=1.3e+02 Score=26.58 Aligned_cols=52 Identities=10% Similarity=0.175 Sum_probs=31.4
Q ss_pred CeEEEEeccceeEEEcCC---c--CeeEEEECCCCCeEEEEecCCC--CCeEEEEEccCCE
Q 013884 219 ASATIFNKKCRPILELGS---G--PYNTVRWNPKGKFLCLAGFGNL--PGDMAFWDYVDGK 272 (434)
Q Consensus 219 ~~i~l~d~~~~~~~~~~~---~--~~~~i~~sP~g~~l~~~~~~~~--~g~i~iwd~~~~~ 272 (434)
..+.+||.+...-..+.. . ....+.+ +++++++||.+.. ...+++||.++.+
T Consensus 231 ~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 231 NSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred ceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 468999987665444421 1 1122222 6778888876431 3578899988764
No 345
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=48.63 E-value=76 Score=28.74 Aligned_cols=59 Identities=3% Similarity=-0.018 Sum_probs=30.2
Q ss_pred eEEEEEccCC--EEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceee
Q 013884 262 DMAFWDYVDG--KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF 320 (434)
Q Consensus 262 ~i~iwd~~~~--~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~ 320 (434)
.+++||..+. +.+..+........+..-+++.++.++....-..-+.+.+.++.++.+.
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~ 346 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVT 346 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCE
T ss_pred eEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeE
Confidence 5789998765 4555444433223334457888888886321111134555566555443
No 346
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=48.39 E-value=31 Score=34.35 Aligned_cols=62 Identities=16% Similarity=0.051 Sum_probs=37.3
Q ss_pred eEEecCCCcEEEEEecCCC-------CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe
Q 013884 4 LLTCLRVGLIIQTFQKSST-------PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM 67 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~-------~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~ 67 (434)
-|.|+++|.+.+.-....+ -....|..++..+|+..+-+..... .....++||||++.|...
T Consensus 480 nL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~--aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 480 GLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIG--CEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTT--CEEEEEEECTTSSEEEEE
T ss_pred ceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCC--ccccCCEECCCCCEEEEE
Confidence 4789999997773332111 0122566667777875433322211 344578999999988765
No 347
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=41.09 E-value=81 Score=28.53 Aligned_cols=93 Identities=10% Similarity=0.148 Sum_probs=48.2
Q ss_pred CCEEEEEEccCCCeEEEEeccc--eeEEEc---CCcCe-eEEEECCCCCeEEEEec-C--C----CCCeEEEEEccCCEE
Q 013884 207 GSEFAVVYGFMPASATIFNKKC--RPILEL---GSGPY-NTVRWNPKGKFLCLAGF-G--N----LPGDMAFWDYVDGKQ 273 (434)
Q Consensus 207 g~~~av~~g~~~~~i~l~d~~~--~~~~~~---~~~~~-~~i~~sP~g~~l~~~~~-~--~----~~g~i~iwd~~~~~~ 273 (434)
+..+.++.|.....+.+||... ..-..+ ...++ ...+..-+++++++||. . + .-..+++||..+.+-
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W 98 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW 98 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence 3445554455555788888752 333333 21111 11111226778888876 2 1 124799999987743
Q ss_pred EE--Eee-CCCceEEEECCCCCEEEEEEc
Q 013884 274 LG--TTR-AECSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 274 i~--~~~-~~~~~~~~wspdg~~l~tas~ 299 (434)
.. ... ...........+++.++.++.
T Consensus 99 ~~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 127 (357)
T 2uvk_A 99 VKLMSHAPMGMAGHVTFVHNGKAYVTGGV 127 (357)
T ss_dssp EECSCCCSSCCSSEEEEEETTEEEEEECC
T ss_pred EECCCCCCcccccceEEEECCEEEEEeCc
Confidence 32 222 222222223367788788775
No 348
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=40.93 E-value=1.2e+02 Score=26.76 Aligned_cols=110 Identities=15% Similarity=0.060 Sum_probs=0.0
Q ss_pred CCEEEEEEcc-----CCCeEEEEeccceeEEEc---CCcCeeEEEECCCCCeEEEEecCCCC--CeEEEEEccCC--EEE
Q 013884 207 GSEFAVVYGF-----MPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLP--GDMAFWDYVDG--KQL 274 (434)
Q Consensus 207 g~~~av~~g~-----~~~~i~l~d~~~~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~--g~i~iwd~~~~--~~i 274 (434)
+..+.++.|. ....+.+||.....-..+ ........+..-+++++++||.+... ..+++||..+. +.+
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 237 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM 237 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEEC
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEEC
Q ss_pred EEeeCCCceEEEECCCCCEEEEEEcCCceeeC--------------CcEEEEeecCceeeee
Q 013884 275 GTTRAECSVTSEWSPDGRYFMTATTAPRLQID--------------NGIKIFHHNGSLFFKK 322 (434)
Q Consensus 275 ~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D--------------~~i~iw~~~g~~~~~~ 322 (434)
..............-+++.++.++. + +.+.+||.........
T Consensus 238 ~~~p~~r~~~~~~~~~~~i~v~GG~------~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 238 TEFPQERSSISLVSLAGSLYAIGGF------AMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp CCCSSCCBSCEEEEETTEEEEECCB------CCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred CCCCCcccceEEEEECCEEEEECCe------eccCCCCceeccceeeeEEEEeCCCCEehhh
No 349
>3kxs_F Capsid protein; core protein, hepadnavirus, four helix bundle, icosahedral, dimer, DNA-binding, HOST cytoplasm; 2.25A {Hepatitis b virus subtype adyw} SCOP: a.62.1.1 PDB: 2g33_C 2g34_C 1qgt_C
Probab=38.98 E-value=10 Score=28.64 Aligned_cols=10 Identities=60% Similarity=1.056 Sum_probs=7.9
Q ss_pred CCCccCCCCc
Q 013884 379 KPAAYRPPHA 388 (434)
Q Consensus 379 ~~~~y~pp~~ 388 (434)
-|.+||||.|
T Consensus 128 tppayrppna 137 (143)
T 3kxs_F 128 TPPAARPPNA 137 (143)
T ss_dssp SCTTTSCSCC
T ss_pred CCcccCCCCC
Confidence 4568999986
No 350
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=37.26 E-value=2.1e+02 Score=24.89 Aligned_cols=79 Identities=5% Similarity=0.043 Sum_probs=40.9
Q ss_pred CeEEEEeccceeEEEcC---C--cCeeEEEECCCCCeEEEEecCCC--CCeEEEEEccCCEEEEE--eeCCCceEEEECC
Q 013884 219 ASATIFNKKCRPILELG---S--GPYNTVRWNPKGKFLCLAGFGNL--PGDMAFWDYVDGKQLGT--TRAECSVTSEWSP 289 (434)
Q Consensus 219 ~~i~l~d~~~~~~~~~~---~--~~~~~i~~sP~g~~l~~~~~~~~--~g~i~iwd~~~~~~i~~--~~~~~~~~~~wsp 289 (434)
..+.+||.....-..+. . .....+.+ +++++++||.+.. ...+++||..+.+-... ............-
T Consensus 173 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 250 (302)
T 2xn4_A 173 STVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV 250 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred cEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE
Confidence 35888998755444331 1 11122222 6778888876431 34799999987743322 2211111111122
Q ss_pred CCCEEEEEEc
Q 013884 290 DGRYFMTATT 299 (434)
Q Consensus 290 dg~~l~tas~ 299 (434)
+++.++.++.
T Consensus 251 ~~~i~v~GG~ 260 (302)
T 2xn4_A 251 NGLLYVVGGD 260 (302)
T ss_dssp TTEEEEECCB
T ss_pred CCEEEEECCc
Confidence 5666666664
No 351
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=35.80 E-value=1.3e+02 Score=22.03 Aligned_cols=60 Identities=12% Similarity=0.129 Sum_probs=31.8
Q ss_pred CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCC
Q 013884 11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD 79 (434)
Q Consensus 11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~ 79 (434)
|.|-+... .|+++.+|+- +..+..-.....-.... .+.+..||.+++.-.++. .||....
T Consensus 19 g~y~l~~q-----~DgNLvly~~--~~~vW~ant~~~~~~~~-~L~l~~dGnLvL~d~~~~-~vWss~t 78 (105)
T 4h3o_A 19 EPYHFIMQ-----DDCNLVLYDH--STSTWASNTEIGGKSGC-SAVLQSDGNFVVYDSSGR-SLWASHS 78 (105)
T ss_dssp TTEEEEEC-----TTSCEEEEET--TEEEEECCCCCTTCCSC-EEEECTTSCEEEECTTCC-EEEECCC
T ss_pred CCEEEEEC-----CCCeEEEEEC--CEEEEEecCCCCCCccE-EEEEeCCccEEEECCCcE-EEEEecC
Confidence 55555555 7888888873 33333221111000112 467778888777654443 3676543
No 352
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=34.98 E-value=2.3e+02 Score=24.81 Aligned_cols=95 Identities=8% Similarity=-0.045 Sum_probs=48.8
Q ss_pred EEEEeccceeEEEcCCcC--e---eEEEECCCCCeEEEEecC-----CCCCeEEEEEccCCEEE--EEeeCCCceEEEEC
Q 013884 221 ATIFNKKCRPILELGSGP--Y---NTVRWNPKGKFLCLAGFG-----NLPGDMAFWDYVDGKQL--GTTRAECSVTSEWS 288 (434)
Q Consensus 221 i~l~d~~~~~~~~~~~~~--~---~~i~~sP~g~~l~~~~~~-----~~~g~i~iwd~~~~~~i--~~~~~~~~~~~~ws 288 (434)
+..||.....-..+..-+ + ..+.+ +++++++||.+ .....+++||..+.+-. ..............
T Consensus 69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 146 (315)
T 4asc_A 69 FLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS 146 (315)
T ss_dssp EEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred eEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE
Confidence 778888765544442111 1 12222 66777777742 12357999999877432 22222222222223
Q ss_pred CCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884 289 PDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 289 pdg~~l~tas~~~rl~~D~~i~iw~~~g~ 317 (434)
-+++.++.++....-..-+.+.+||....
T Consensus 147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~ 175 (315)
T 4asc_A 147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKF 175 (315)
T ss_dssp ETTEEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred ECCEEEEEeCCCCCCcccceEEEEeCCCC
Confidence 46677777665222222355677776443
No 353
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=33.46 E-value=5e+02 Score=28.22 Aligned_cols=234 Identities=9% Similarity=0.091 Sum_probs=114.6
Q ss_pred EEEEecCCeEEEEeCCCCCCceeeeeecC-CeeEEEEeCCCCCeEEEE-ecC---C-C----------------------
Q 013884 63 VACRMATNEIQFFDTTDFPKGILYRLRVP-GVAAFEVSKAPGSHVAVF-VPE---S-K---------------------- 114 (434)
Q Consensus 63 ~la~~~~~~i~v~~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~~ia~~-~~~---~-~---------------------- 114 (434)
-++...+++++|..++........++.+. .++.++++|....++.+. ..+ . +
T Consensus 708 g~v~~~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1158)
T 3ei3_A 708 SLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSK 787 (1158)
T ss_dssp EEEEECSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCC
T ss_pred cEEEEcCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccc
Confidence 34455567899999877665555555544 477888888743322211 110 0 0
Q ss_pred -------------C---CCceEEEEEcCCCCCCCceeeeeecccc----eeEEEECCC-CCeEEEEEEecccccCceeec
Q 013884 115 -------------G---SPASVQIYACGKDLQSQPLARRSFFRCS----TVQLNWNRG-STGLLAVAQSDVDKTNQSYYG 173 (434)
Q Consensus 115 -------------~---~~~~v~i~~~~~~~~~~~i~~~~~~~~~----~~~~~ws~~-G~~l~~~~~~~~d~~~~~~~g 173 (434)
+ ..+.+++.+-.+ .+.+....+...+ .+.+.+..+ ..++++.+..-.......-.|
T Consensus 788 ~~~~~~~~~~~~~g~~~~~s~i~lidp~t---~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~G 864 (1158)
T 3ei3_A 788 LFSSSTAPHETSFGEEVEVHNLLIIDQHT---FEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQG 864 (1158)
T ss_dssp CC----------CCCEEEEEEEEEEETTT---CCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCE
T ss_pred cccccccCchhhcCCceeeEEEEEEeCCC---CeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCce
Confidence 0 013456666544 3344443333222 122334433 355655554311100000112
Q ss_pred ceeEEEEeeCCCc-eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee-EE-Ec-CCcCeeEEEECCCCC
Q 013884 174 ESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-IL-EL-GSGPYNTVRWNPKGK 249 (434)
Q Consensus 174 ~~~l~~l~~~~~~-~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~-~~-~~-~~~~~~~i~~sP~g~ 249 (434)
.|+.+++.+.. ......+.+|+|++++-- +| +|++.. ..++.+|++..+. +. +. .-..+..+...-.|.
T Consensus 865 --ri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~i---g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~ 937 (1158)
T 3ei3_A 865 --RIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASI---NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGD 937 (1158)
T ss_dssp --EEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEE---TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETT
T ss_pred --EEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEc---CCEEEEEECCCCceEEEEeeccccEEEEEEeccCC
Confidence 24444443221 111122237899988743 35 455322 3599999986432 22 11 001122223333578
Q ss_pred eEEEEecCCCCCeEEE--EEccCCEEEEEeeCC---CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884 250 FLCLAGFGNLPGDMAF--WDYVDGKQLGTTRAE---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 250 ~l~~~~~~~~~g~i~i--wd~~~~~~i~~~~~~---~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g 316 (434)
++++|.. ...|.+ |+....+.+...... +++.+++--+ ..++.+.. ++.+.+..+..
T Consensus 938 ~I~vgD~---~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~-~t~l~aD~------~gNl~vl~~~~ 999 (1158)
T 3ei3_A 938 FILVGDL---MRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDD-DNFLGAEN------AFNLFVCQKDS 999 (1158)
T ss_dssp EEEEEES---SBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEET-TEEEEEET------TSEEEEEEECT
T ss_pred EEEEEEh---hheEEEEEEEcCCCeEEEEEeecccccEEEEEEEcc-CcEEEEcC------CCcEEEEecCC
Confidence 8888873 224554 555555544433332 5666666544 36666766 88899988843
No 354
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=33.25 E-value=2.5e+02 Score=24.57 Aligned_cols=79 Identities=9% Similarity=0.026 Sum_probs=41.6
Q ss_pred CeEEEEeccceeEEEcCC-----cCeeEEEECCCCCeEEEEecCCC--CCeEEEEEccCCEEEEE--eeCCCceEEEECC
Q 013884 219 ASATIFNKKCRPILELGS-----GPYNTVRWNPKGKFLCLAGFGNL--PGDMAFWDYVDGKQLGT--TRAECSVTSEWSP 289 (434)
Q Consensus 219 ~~i~l~d~~~~~~~~~~~-----~~~~~i~~sP~g~~l~~~~~~~~--~g~i~iwd~~~~~~i~~--~~~~~~~~~~wsp 289 (434)
..+.+||.....-..+.. .....+.+ +++++++||.+.. ...+++||..+.+-... ............-
T Consensus 184 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 261 (308)
T 1zgk_A 184 NSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH 261 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred ceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE
Confidence 368889987655444321 11222333 6778888876432 35799999987743322 2211111111122
Q ss_pred CCCEEEEEEc
Q 013884 290 DGRYFMTATT 299 (434)
Q Consensus 290 dg~~l~tas~ 299 (434)
+++.++.++.
T Consensus 262 ~~~i~v~GG~ 271 (308)
T 1zgk_A 262 QGRIYVLGGY 271 (308)
T ss_dssp TTEEEEECCB
T ss_pred CCEEEEEcCc
Confidence 5666666664
No 355
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A*
Probab=32.75 E-value=1.5e+02 Score=21.83 Aligned_cols=60 Identities=12% Similarity=0.119 Sum_probs=32.0
Q ss_pred CCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCC
Q 013884 9 RVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTT 78 (434)
Q Consensus 9 P~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~ 78 (434)
++|.+-+... .|+++.+++ .+..+..-.... ...-..+.+..||++++...++. .+|...
T Consensus 18 ~~~~~~l~~~-----~dGnlvl~~--~~~~vW~sn~~~--~~~~~~l~l~~dGNLVl~~~~~~-~~W~S~ 77 (110)
T 3a0c_A 18 VGPSYRLIMQ-----GDCNFVLYD--SGKPVWASNTGG--LGSGCRLTLHNNGNLVIYDQSNR-VIWQTK 77 (110)
T ss_dssp ETTTEEEEEC-----TTSCEEEEE--TTEEEEECCCTT--SCSSCEEEECTTSCEEEECTTCC-EEEECC
T ss_pred ECCCEEEEEc-----CCCcEEEEE--CCEEEEECCCCC--CCCcEEEEEeCCCCEEEECCCCc-EEEecC
Confidence 4555555555 577887777 344443322111 01111466777888777654443 467654
No 356
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=31.38 E-value=4.2e+02 Score=26.71 Aligned_cols=98 Identities=18% Similarity=0.186 Sum_probs=54.8
Q ss_pred eEEEEeccceeEEEcCC---c-CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee-----CC--CceEEEEC
Q 013884 220 SATIFNKKCRPILELGS---G-PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-----AE--CSVTSEWS 288 (434)
Q Consensus 220 ~i~l~d~~~~~~~~~~~---~-~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~-----~~--~~~~~~ws 288 (434)
.+.+||.....-..... . ...+++.-.+|++++.||.+... .+++||..+.+-..... .. ....+.+.
T Consensus 469 dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~-~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~ 547 (695)
T 2zwa_A 469 DNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP-AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFD 547 (695)
T ss_dssp CCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC-SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEE
T ss_pred cEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC-CEEEEECCCCceEEccCCCCCCCcccceeEEEEe
Confidence 67889987654443321 1 11233333488999999876433 89999998875332221 11 12225555
Q ss_pred CC-CCEEEEEEcCCce-eeCCcEEEEeecCce
Q 013884 289 PD-GRYFMTATTAPRL-QIDNGIKIFHHNGSL 318 (434)
Q Consensus 289 pd-g~~l~tas~~~rl-~~D~~i~iw~~~g~~ 318 (434)
.+ ++.++.|+....- ..-+.+.+||.....
T Consensus 548 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 548 PVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 55 6777777652110 123567788875543
No 357
>2fr2_A Hypothetical protein RV2717C; beta barrel, fatty acid binding, structural genomics, PSI, P structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: b.60.1.8
Probab=30.39 E-value=2.2e+02 Score=23.13 Aligned_cols=56 Identities=11% Similarity=0.039 Sum_probs=35.8
Q ss_pred eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeC
Q 013884 4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDT 77 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~ 77 (434)
-|.||++|.-.+.+. -+.|.+.+++..+.-.+ ...|.|++...++. ..+.+-||..
T Consensus 38 ei~fs~~G~p~L~Y~---------s~~w~~~~~~p~h~E~G---------fwr~~~~g~ve~~la~p~G~~ei~~G 95 (172)
T 2fr2_A 38 EVVFAHVGKPFLTYT---------QQTRAVADGKPLHSETG---------YLRVCRPGCVELVLAHPSGITEIEVG 95 (172)
T ss_dssp EEEEEECSSSEEEEE---------EEEEETTTCCEEEEEEE---------EEEESSTTEEEEEEEETTTEEEEEEE
T ss_pred EEEEEECCCCeEEEE---------EEEEECCCCCcceEeeE---------EEEECCCCcEEEEEEeCCceEEEEEE
Confidence 467888887666655 77888888766554221 35677777544443 3467777764
No 358
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=30.02 E-value=2.4e+02 Score=28.64 Aligned_cols=95 Identities=8% Similarity=0.022 Sum_probs=51.9
Q ss_pred CeEEEEeccceeEEEcC-----------CcCeeEEEECCCCCeEEEEecCCC---CCeEEEEEccCCEE--EEEeeCCCc
Q 013884 219 ASATIFNKKCRPILELG-----------SGPYNTVRWNPKGKFLCLAGFGNL---PGDMAFWDYVDGKQ--LGTTRAECS 282 (434)
Q Consensus 219 ~~i~l~d~~~~~~~~~~-----------~~~~~~i~~sP~g~~l~~~~~~~~---~g~i~iwd~~~~~~--i~~~~~~~~ 282 (434)
..+.+||.....-..+. ......+.++.+|+++++||.+.. -..+++||..+.+- +........
T Consensus 412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~ 491 (695)
T 2zwa_A 412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF 491 (695)
T ss_dssp CCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCB
T ss_pred CcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcc
Confidence 36888887644322221 111223334337888888886542 25799999988643 322222222
Q ss_pred eE-EEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884 283 VT-SEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 283 ~~-~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~ 317 (434)
.. +..-.+|+.++.|+... ++.+.+||....
T Consensus 492 ~h~~~~~~~~~iyv~GG~~~----~~~v~~yd~~t~ 523 (695)
T 2zwa_A 492 RHSACSLPDGNVLILGGVTE----GPAMLLYNVTEE 523 (695)
T ss_dssp SCEEEECTTSCEEEECCBCS----SCSEEEEETTTT
T ss_pred cceEEEEcCCEEEEECCCCC----CCCEEEEECCCC
Confidence 22 23324888888887631 115777776544
No 359
>2a13_A AT1G79260; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; HET: MSE; 1.32A {Arabidopsis thaliana} SCOP: b.60.1.8 PDB: 2q4n_A 3emm_A*
Probab=28.00 E-value=2.2e+02 Score=22.96 Aligned_cols=56 Identities=14% Similarity=0.197 Sum_probs=31.4
Q ss_pred eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeC
Q 013884 4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDT 77 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~ 77 (434)
-|.|+++|.-.+.+. -+.|.+.+++..+.-.+ ...|.|++...++. ..+.+-||..
T Consensus 49 ei~fs~~G~p~L~Y~---------~~~w~~~~~~p~h~E~G---------ywr~~p~~~ve~~la~p~G~~ei~~G 106 (166)
T 2a13_A 49 EIRFSHSGKPVIAYT---------QKTWKLESGAPMHAESG---------YFRPRPDGSIEVVIAQSTGLVEVQKG 106 (166)
T ss_dssp EEEEECCSSSCEEEE---------EEEECTTTCCEEEEEEE---------EEEECTTSEEEEEEEETTSCEEEEEE
T ss_pred EEEEEeCCCCeEEEE---------EEEEECCCCCcceEeeE---------EEEECCCCcEEEEEEeCCceEEEEEE
Confidence 366788776555444 66777777765443211 34566776544433 2356666653
No 360
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=22.24 E-value=3.8e+02 Score=23.09 Aligned_cols=54 Identities=9% Similarity=0.148 Sum_probs=31.3
Q ss_pred CeEEEEeccceeEEEcC---CcCeeEEEECCCCCeEEEEecCCC--CCeEEEEEccCCE
Q 013884 219 ASATIFNKKCRPILELG---SGPYNTVRWNPKGKFLCLAGFGNL--PGDMAFWDYVDGK 272 (434)
Q Consensus 219 ~~i~l~d~~~~~~~~~~---~~~~~~i~~sP~g~~l~~~~~~~~--~g~i~iwd~~~~~ 272 (434)
..+.+||.+...-..+. ..........-+++++++||.+.. ...+++||.++.+
T Consensus 220 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 220 KSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred ceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 36889998765544432 111111122236778888875431 2468999988764
No 361
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=21.00 E-value=4.7e+02 Score=23.75 Aligned_cols=107 Identities=9% Similarity=0.104 Sum_probs=0.0
Q ss_pred EEEEccCCCeEEEEec-cceeEEEcCCcCeeEEEECC------CCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---
Q 013884 211 AVVYGFMPASATIFNK-KCRPILELGSGPYNTVRWNP------KGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--- 280 (434)
Q Consensus 211 av~~g~~~~~i~l~d~-~~~~~~~~~~~~~~~i~~sP------~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--- 280 (434)
.|+.+..++.+.-+|. .++..-++.......+.-.. +|..++...+.+ |.|+.+|..++.....+...
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~d--G~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGD--GNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTT--TEEEEEETTTEEEEEEEEHHHHH
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCC--CEEEEEECCCCcEEeeeccccce
Q ss_pred CceEEEECC-----------CCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeecc
Q 013884 281 CSVTSEWSP-----------DGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMFD 325 (434)
Q Consensus 281 ~~~~~~wsp-----------dg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~~~~ 325 (434)
...-+..+. ++..+++++. ++.+...|. +|+.+.+....
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~------~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSM------RTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEE------EEEEEEEETTTCCEEEEESTT
T ss_pred eccccccCCCceeecccccccCCEEEEEec------CCEEEEEECCCCcEEEEEecC
No 362
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A*
Probab=20.83 E-value=2.5e+02 Score=20.45 Aligned_cols=60 Identities=12% Similarity=0.277 Sum_probs=30.7
Q ss_pred CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCC
Q 013884 10 VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD 79 (434)
Q Consensus 10 ~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~ 79 (434)
+|+|.+... .|+++.|++. +..+..-..... .... .+.+..||.+++...++. .+|....
T Consensus 18 ~g~~~L~~q-----~dGnLvly~~--~~~vW~snt~~~-~~~~-~l~l~~dGNLvl~~~~~~-~~W~S~t 77 (109)
T 3dzw_A 18 NGRYVFIMQ-----EDCNLVLYDV--DKPIWATNTGGL-DRRC-HLSMQSDGNLVVYSPRNN-PIWASNT 77 (109)
T ss_dssp ETTEEEEEC-----TTSCEEEEET--TEEEEECCCTTS-SSSC-EEEECTTSCEEEECTTSC-EEEECCC
T ss_pred CCCEEEEEc-----CCCcEEEEeC--CEEEEECCcccC-CCCE-EEEEeCCCCEEEECCCCC-EEEECCC
Confidence 355555555 5777777764 333332111110 0112 466777887777654443 3776543
No 363
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=20.30 E-value=98 Score=33.71 Aligned_cols=38 Identities=11% Similarity=0.085 Sum_probs=30.5
Q ss_pred CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee
Q 013884 238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR 278 (434)
Q Consensus 238 ~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~ 278 (434)
.+.+++..++..++++-. .+++++|||+.++.++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~---~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLS---LDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEB---TTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEe---CCCEEEEEECCCCCeEEeec
Confidence 345667778889998888 55699999999999888754
Done!