BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013886
(434 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EX1|A Chain A, Beta-D-Glucan Exohydrolase From Barley
pdb|1IEX|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
4i,4iii,4v-S-Trithiocellohexaose
pdb|1IEW|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
2-Deoxy-2-Fluoro-Alpha-D-Glucoside
pdb|1IEV|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Cyclohexitol
pdb|1IEQ|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1
pdb|1J8V|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With 4'-Nitrophenyl
3i-Thiolaminaritrioside
Length = 605
Score = 497 bits (1280), Expect = e-141, Method: Compositional matrix adjust.
Identities = 244/432 (56%), Positives = 306/432 (70%), Gaps = 2/432 (0%)
Query: 1 MTSIVSGLQGRPPKEHPKGYPYVAGRNNVIACAKHFVGDGGTERGINEGNTISTYDDLEK 60
MT ++ GLQG PK+ G P+VAG+N V ACAKHFVGDGGT GINE NTI + L
Sbjct: 173 MTELIPGLQGDVPKDFTSGMPFVAGKNKVAACAKHFVGDGGTVDGINENNTIINREGLMN 232
Query: 61 IHMAPYLDCISQGVCTIMASYSSWNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRL 120
IHM Y + + +GV T+M SYSSWNG K+HA+ L+T LK+ L FKGFVISDWEG+DR+
Sbjct: 233 IHMPAYKNAMDKGVSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRI 292
Query: 121 SQPHGSNYRYCISTAVNAGIDMVMVPHRFDQFFEDLTYLVESGKVPMSRIDDAVERILRV 180
+ P GS+Y Y + ++ AG+DM+MVP+++ QF LT V G +PMSRIDDAV RILRV
Sbjct: 293 TTPAGSDYSYSVKASILAGLDMIMVPNKYQQFISILTGHVNGGVIPMSRIDDAVTRILRV 352
Query: 181 KFVAGLFEYPFSDKSLLNIVGCKLHRELAREAVRKSLVLLKNGK-KPEKPFLPLDRNAKR 239
KF GLFE P++D ++ +G + HR+LAREA RKSLVLLKNGK + P LPL + A +
Sbjct: 353 KFTMGLFENPYADPAMAEQLGKQEHRDLAREAARKSLVLLKNGKTSTDAPLLPLPKKAPK 412
Query: 240 ILVVGTHADDLGYQCGGWTKTWFGMSGKITIGTTILEAVKEAVGDETEVIYEKYPSPDTF 299
ILV G+HAD+LGYQCGGWT W G +G+ T+GTTILEAVK AV T V++ + P +
Sbjct: 413 ILVAGSHADNLGYQCGGWTIEWQGDTGRTTVGTTILEAVKAAVDPSTVVVFAENPDAEFV 472
Query: 300 VAGDFSFAIAAVGEEPYAETLGDNSELIIPLNGGDVISLVAERIPTLAILVSGRPLVLEP 359
+G FS+AI AVGE PY ET GDN L IP G + V + +L+SGRP+V++P
Sbjct: 473 KSGGFSYAIVAVGEHPYTETKGDNLNLTIPEPGLSTVQAVCGGVRCATVLISGRPVVVQP 532
Query: 360 QLLEKADALVAAWLPGSEGSGIADVVFGDHDFTGRLPVTWYRSVQRLPMNVADNTYDPLF 419
LL +DALVAAWLPGSEG G+ D +FGD FTGRLP TW++SV +LPMNV D YDPLF
Sbjct: 533 -LLAASDALVAAWLPGSEGQGVTDALFGDFGFTGRLPRTWFKSVDQLPMNVGDAHYDPLF 591
Query: 420 PLGFGLTYKKEK 431
LG+GLT K
Sbjct: 592 RLGYGLTTNATK 603
>pdb|1LQ2|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X38|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X39|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
Length = 602
Score = 496 bits (1277), Expect = e-140, Method: Compositional matrix adjust.
Identities = 243/427 (56%), Positives = 305/427 (71%), Gaps = 2/427 (0%)
Query: 1 MTSIVSGLQGRPPKEHPKGYPYVAGRNNVIACAKHFVGDGGTERGINEGNTISTYDDLEK 60
MT ++ GLQG PK+ G P+VAG+N V ACAKHFVGDGGT GINE NTI + L
Sbjct: 173 MTELIPGLQGDVPKDFTSGMPFVAGKNKVAACAKHFVGDGGTVDGINENNTIINREGLMN 232
Query: 61 IHMAPYLDCISQGVCTIMASYSSWNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRL 120
IHM Y + + +GV T+M SYSSWNG K+HA+ L+T LK+ L FKGFVISDWEG+DR+
Sbjct: 233 IHMPAYKNAMDKGVSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRI 292
Query: 121 SQPHGSNYRYCISTAVNAGIDMVMVPHRFDQFFEDLTYLVESGKVPMSRIDDAVERILRV 180
+ P GS+Y Y + ++ AG+DM+MVP+++ QF LT V G +PMSRIDDAV RILRV
Sbjct: 293 TTPAGSDYSYSVKASILAGLDMIMVPNKYQQFISILTGHVNGGVIPMSRIDDAVTRILRV 352
Query: 181 KFVAGLFEYPFSDKSLLNIVGCKLHRELAREAVRKSLVLLKNGK-KPEKPFLPLDRNAKR 239
KF GLFE P++D ++ +G + HR+LAREA RKSLVLLKNGK + P LPL + A +
Sbjct: 353 KFTMGLFENPYADPAMAEQLGKQEHRDLAREAARKSLVLLKNGKTSTDAPLLPLPKKAPK 412
Query: 240 ILVVGTHADDLGYQCGGWTKTWFGMSGKITIGTTILEAVKEAVGDETEVIYEKYPSPDTF 299
ILV G+HAD+LGYQCGGWT W G +G+ T+GTTILEAVK AV T V++ + P +
Sbjct: 413 ILVAGSHADNLGYQCGGWTIEWQGDTGRTTVGTTILEAVKAAVDPSTVVVFAENPDAEFV 472
Query: 300 VAGDFSFAIAAVGEEPYAETLGDNSELIIPLNGGDVISLVAERIPTLAILVSGRPLVLEP 359
+G FS+AI AVGE PY ET GDN L IP G + V + +L+SGRP+V++P
Sbjct: 473 KSGGFSYAIVAVGEHPYTETKGDNLNLTIPEPGLSTVQAVCGGVRCATVLISGRPVVVQP 532
Query: 360 QLLEKADALVAAWLPGSEGSGIADVVFGDHDFTGRLPVTWYRSVQRLPMNVADNTYDPLF 419
LL +DALVAAWLPGSEG G+ D +FGD FTGRLP TW++SV +LPMNV D YDPLF
Sbjct: 533 -LLAASDALVAAWLPGSEGQGVTDALFGDFGFTGRLPRTWFKSVDQLPMNVGDAHYDPLF 591
Query: 420 PLGFGLT 426
LG+GLT
Sbjct: 592 RLGYGLT 598
>pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of
Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas
Sp. Bb1
Length = 822
Score = 303 bits (777), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 183/447 (40%), Positives = 255/447 (57%), Gaps = 47/447 (10%)
Query: 4 IVSGLQGRPPKEHPKGYPYVAGRNNVIACAKHFVGDGGTERGINEGNTISTYDDLEKIHM 63
+V+G+QG + KG +N IA AKHFVGDGGTERG++ GNT+ L IH
Sbjct: 192 MVTGIQGDVGADFLKG-------SNRIATAKHFVGDGGTERGVDRGNTLIDEKGLRDIHS 244
Query: 64 APYLDCISQGVCTIMASYSSWNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRLSQP 123
A Y I+QGV ++MAS++SWNG+++H D LLT+VLKN+LGF GFV+SDW +
Sbjct: 245 AGYFSAINQGVQSVMASFNSWNGKRVHGDKHLLTDVLKNQLGFDGFVVSDWNAHKFV--- 301
Query: 124 HGSNYRYCISTAVNAGIDMVMVPHRFDQFFEDLTYLVESGKVPMSRIDDAVERILRVKFV 183
G + C + A+NAG+D++MVP F+ F+ + V++G + SRI+DAV R LR K
Sbjct: 302 EGCDLEQC-AQAINAGVDVIMVPEHFEAFYHNTVKQVKAGVIAESRINDAVRRFLRAKIR 360
Query: 184 AGLF--EYPFS--DKSLLNIVGCKLHRELAREAVRKSLVLLKNGKKPEKPFLPLDRNAKR 239
G+F P + + +G HR LAREAVRKSLVLLKN + LP+ + + R
Sbjct: 361 WGVFTKSKPSARPESQHPQWLGAAEHRTLAREAVRKSLVLLKNNES----ILPI-KASSR 415
Query: 240 ILVVGTHADDLGYQCGGWTKTWFGMSGK-------ITIGTTILEAVKEAVGDETEVIYEK 292
ILV G A+ + Q GGW+ +W G +I + + V +A G T +
Sbjct: 416 ILVAGKGANAINMQAGGWSVSWQGTDNTNSDFPNATSIFSGLQSQVTKAGGKITLSESGE 475
Query: 293 YPS-PDTFVAGDFSFAIAAVGEEPYAETLGDNSELIIPLNGGDVISLV----AERIPTLA 347
Y S PD AI +GEEPYAE GD L ++L+ A+ IP +
Sbjct: 476 YTSKPDV--------AIVVIGEEPYAEWFGDIELLEFQHETKHALALLKQLKADNIPVVT 527
Query: 348 ILVSGRPLVLEPQLLEKADALVAAWLPGSEGSGIADVVFGDH------DFTGRLPVTWYR 401
+ +SGRPL + + L +DA VAAWLPGSEG G+ADV+ + DFTG+L +W +
Sbjct: 528 VFLSGRPLWVNKE-LNASDAFVAAWLPGSEGEGVADVLLTNKQGKTQFDFTGKLSFSWPK 586
Query: 402 SVQRLPMNVADNTYDPLFPLGFGLTYK 428
+ +N+ D YDPLF G+GLTY+
Sbjct: 587 YDDQFTLNLNDADYDPLFAYGYGLTYQ 613
>pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase
(Exop) From Pseudoalteromonas Sp. Bb1
pdb|3UT0|A Chain A, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|B Chain B, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|C Chain C, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|D Chain D, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
Length = 822
Score = 303 bits (776), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 183/447 (40%), Positives = 255/447 (57%), Gaps = 47/447 (10%)
Query: 4 IVSGLQGRPPKEHPKGYPYVAGRNNVIACAKHFVGDGGTERGINEGNTISTYDDLEKIHM 63
+V+G+QG + KG +N IA AKHFVGDGGTERG++ GNT+ L IH
Sbjct: 192 MVTGIQGDVGADFLKG-------SNRIATAKHFVGDGGTERGVDRGNTLIDEKGLRDIHS 244
Query: 64 APYLDCISQGVCTIMASYSSWNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRLSQP 123
A Y I+QGV ++MAS++SWNG+++H D LLT+VLKN+LGF GFV+SDW +
Sbjct: 245 AGYFSAINQGVQSVMASFNSWNGKRVHGDKHLLTDVLKNQLGFDGFVVSDWNAHKFV--- 301
Query: 124 HGSNYRYCISTAVNAGIDMVMVPHRFDQFFEDLTYLVESGKVPMSRIDDAVERILRVKFV 183
G + C + A+NAG+D++MVP F+ F+ + V++G + SRI+DAV R LR K
Sbjct: 302 EGCDLEQC-AQAINAGVDVIMVPEHFEAFYHNTVKQVKAGVIAESRINDAVRRFLRAKIR 360
Query: 184 AGLF--EYPFS--DKSLLNIVGCKLHRELAREAVRKSLVLLKNGKKPEKPFLPLDRNAKR 239
G+F P + + +G HR LAREAVRKSLVLLKN + LP+ + + R
Sbjct: 361 WGVFTKSKPSARPESQHPQWLGAAEHRTLAREAVRKSLVLLKNNES----ILPI-KASSR 415
Query: 240 ILVVGTHADDLGYQCGGWTKTWFGMSGK-------ITIGTTILEAVKEAVGDETEVIYEK 292
ILV G A+ + Q GGW+ +W G +I + + V +A G T +
Sbjct: 416 ILVAGKGANAINMQAGGWSVSWQGTDNTNSDFPNATSIFSGLQSQVTKAGGKITLSESGE 475
Query: 293 YPS-PDTFVAGDFSFAIAAVGEEPYAETLGDNSELIIPLNGGDVISLV----AERIPTLA 347
Y S PD AI +GEEPYAE GD L ++L+ A+ IP +
Sbjct: 476 YTSKPDV--------AIVVIGEEPYAEWFGDIELLEFQHETKHALALLKQLKADNIPVVT 527
Query: 348 ILVSGRPLVLEPQLLEKADALVAAWLPGSEGSGIADVVFGDH------DFTGRLPVTWYR 401
+ +SGRPL + + L +DA VAAWLPGSEG G+ADV+ + DFTG+L +W +
Sbjct: 528 VFLSGRPLWVNKE-LNASDAFVAAWLPGSEGEGVADVLLTNKQGKTQFDFTGKLSFSWPK 586
Query: 402 SVQRLPMNVADNTYDPLFPLGFGLTYK 428
+ +N+ D YDPLF G+GLTY+
Sbjct: 587 YDDQFTLNLNDADYDPLFAYGYGLTYQ 613
>pdb|3ZYZ|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution.
pdb|3ZZ1|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution
Length = 713
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 118/451 (26%), Positives = 187/451 (41%), Gaps = 72/451 (15%)
Query: 29 VIACAKHFVGDGGTERGINEGNTISTYDD--LEKIHMAPYLDCISQGVCTIMASYSSWNG 86
V A AKH++ + E+ +N S DD L +++ P+ D + V ++M SY+ N
Sbjct: 153 VQATAKHYILN---EQELNRETISSNPDDRTLHELYTWPFADAVQANVASVMCSYNKVNT 209
Query: 87 RKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRLSQPHGSNYRYCISTAVNAGIDMVMVP 146
D + L VLK++LGF G+V++DW N ++ + N+G+DM M
Sbjct: 210 TWACEDQYTLQTVLKDQLGFPGYVMTDW------------NAQHTTVQSANSGLDMSMPG 257
Query: 147 HRFDQ----FFEDLTYLVESGKVPMSRIDDAVERILRVKFVAGLFE--YPFSDKSLLNIV 200
F+ + LT V S +VP SR+DD V RIL ++ G + YP + S N+
Sbjct: 258 TDFNGNNRLWGPALTNAVNSNQVPTSRVDDMVTRILAAWYLTGQDQAGYPSFNIS-RNVQ 316
Query: 201 GCKLHRELAREAVRKSLVLLKNGKKPEKPFLPLDRNAKRILV-----VGTHA------DD 249
G H+ R R +VLLKN + LPL + A +V +G HA +D
Sbjct: 317 GN--HKTNVRAIARDGIVLLKN----DANILPLKKPASIAVVGSAAIIGNHARNSPSCND 370
Query: 250 LGYQCGGWTKTWFGMSGKITIGTTILEAVK-EAVGDETEVIYEKYPSPDTF--------V 300
G G W + +A+ A T+V + + V
Sbjct: 371 KGCDDGALGMGWGSGAVNYPYFVAPYDAINTRASSQGTQVTLSNTDNTSSGASAARGKDV 430
Query: 301 AGDFSFAIAAVGEEPYAETLGDNSELIIPLNGGDVISLVAERIPTLAILVSGRPLVLEPQ 360
A F A + G GD + L NG ++ VA + ++V ++ Q
Sbjct: 431 AIVFITADSGEGYITVEGNAGDRNNLDPWHNGNALVQAVAGANSNVIVVVHSVGAIILEQ 490
Query: 361 LLE--KADALVAAWLPGSE-GSGIADVVFGDHDFTGRLPVTWYRSVQRLPMNVA------ 411
+L + A+V A LP E G+ + DV++GD +G+L T +S +
Sbjct: 491 ILALPQVKAVVWAGLPSQESGNALVDVLWGDVSPSGKLVYTIAKSPNDYNTRIVSGGSDS 550
Query: 412 -------------DNTYDPLFPLGFGLTYKK 429
D P + G+GL+Y K
Sbjct: 551 FSEGLFIDYKHFDDANITPRYEFGYGLSYTK 581
>pdb|4I8D|A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
pdb|4I8D|B Chain B, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
Length = 714
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 118/451 (26%), Positives = 187/451 (41%), Gaps = 72/451 (15%)
Query: 29 VIACAKHFVGDGGTERGINEGNTISTYDD--LEKIHMAPYLDCISQGVCTIMASYSSWNG 86
V A AKH++ + E+ +N S DD L +++ P+ D + V ++M SY+ N
Sbjct: 154 VQATAKHYILN---EQELNRETISSNPDDRTLHELYTWPFADAVQANVASVMCSYNKVNT 210
Query: 87 RKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRLSQPHGSNYRYCISTAVNAGIDMVMVP 146
D + L VLK++LGF G+V++DW N ++ + N+G+DM M
Sbjct: 211 TWACEDQYTLQTVLKDQLGFPGYVMTDW------------NAQHTTVQSANSGLDMSMPG 258
Query: 147 HRFDQ----FFEDLTYLVESGKVPMSRIDDAVERILRVKFVAGLFE--YPFSDKSLLNIV 200
F+ + LT V S +VP SR+DD V RIL ++ G + YP + S N+
Sbjct: 259 TDFNGNNRLWGPALTNAVNSNQVPTSRVDDMVTRILAAWYLTGQDQAGYPSFNIS-RNVQ 317
Query: 201 GCKLHRELAREAVRKSLVLLKNGKKPEKPFLPLDRNAKRILV-----VGTHA------DD 249
G H+ R R +VLLKN + LPL + A +V +G HA +D
Sbjct: 318 GN--HKTNVRAIARDGIVLLKN----DANILPLKKPASIAVVGSAAIIGNHARNSPSCND 371
Query: 250 LGYQCGGWTKTWFGMSGKITIGTTILEAVK-EAVGDETEVIYEKYPSPDTF--------V 300
G G W + +A+ A T+V + + V
Sbjct: 372 KGCDDGALGMGWGSGAVNYPYFVAPYDAINTRASSQGTQVTLSNTDNTSSGASAARGKDV 431
Query: 301 AGDFSFAIAAVGEEPYAETLGDNSELIIPLNGGDVISLVAERIPTLAILVSGRPLVLEPQ 360
A F A + G GD + L NG ++ VA + ++V ++ Q
Sbjct: 432 AIVFITADSGEGYITVEGNAGDRNNLDPWHNGNALVQAVAGANSNVIVVVHSVGAIILEQ 491
Query: 361 LLE--KADALVAAWLPGSE-GSGIADVVFGDHDFTGRLPVTWYRSVQRLPMNVA------ 411
+L + A+V A LP E G+ + DV++GD +G+L T +S +
Sbjct: 492 ILALPQVKAVVWAGLPSQESGNALVDVLWGDVSPSGKLVYTIAKSPNDYNTRIVSGGSDS 551
Query: 412 -------------DNTYDPLFPLGFGLTYKK 429
D P + G+GL+Y K
Sbjct: 552 FSEGLFIDYKHFDDANITPRYEFGYGLSYTK 582
>pdb|3BMX|A Chain A, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3BMX|B Chain B, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3NVD|A Chain A, Structure Of Ybbd In Complex With Pugnac
pdb|3NVD|B Chain B, Structure Of Ybbd In Complex With Pugnac
Length = 642
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 103/464 (22%), Positives = 190/464 (40%), Gaps = 90/464 (19%)
Query: 26 RNNVIACAKHFVGDGGTERGINEGNTISTY--DDLEKIHMAPYLDCISQGVCTIMASYSS 83
R ++ + KHF G G T+ + G + ++ + L ++ + P+ I G +M ++
Sbjct: 213 RQDIASALKHFPGHGDTDVDSHYGLPLVSHGQERLREVELYPFQKAIDAGADMVMTAHVQ 272
Query: 84 WNG-------RKLHADHFL---------LTEVLKNKLGFKGFVISDWEGLDRLSQPHGSN 127
+ KL L +T +L+ ++GF G +++D + ++ G
Sbjct: 273 FPAFDDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMGFNGVIVTDALNMKAIADHFGQ- 331
Query: 128 YRYCISTAVNAGIDMVMVP---------HRFDQFFEDLTYLVESGKVPMSRIDDAVERIL 178
+ AV AG+D+ ++P +F + + L V++G +P +I+++VERI+
Sbjct: 332 -EEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERII 390
Query: 179 RVKFVAGLFEYPFSDKS------LLNIVGCKLHRELAREAVRKSLVLLKNGKKPEKPFLP 232
+K G++ SD + IVG K H + ++ K++ +LKN ++ PF P
Sbjct: 391 SLKIKRGMYPARNSDSTKEKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKN-EQHTLPFKP 449
Query: 233 LDRNAKRILVVGTHADDLGYQCGGWTKTWFGMSGKITIGTTILEAVKEAVGDETEVIYEK 292
+ RIL+V + + Q +T + + I L + A ++
Sbjct: 450 --KKGSRILIVAPYEE----QTASIEQTIHDLIKRKKIKPVSLSKMNFASQVFKTEHEKQ 503
Query: 293 YPSPDTFVAGDFSFAIAAVGEEPYA------ETLGDNSELIIPLNGGDVISLVAERIPTL 346
D + G + V +P +T+ D+S+ + V R
Sbjct: 504 VKEADYIITGSY-----VVKNDPVVNDGVIDDTISDSSKW----------ATVFPRAVMK 548
Query: 347 AILVSGRPLVL-------EPQLLEKADALVAA----------WLPGSEGSGIADVVFGDH 389
A L +P VL + E+A AL+A +L + +G+ +FG
Sbjct: 549 AALQHNKPFVLMSLRNPYDAANFEEAKALIAVYGFKGYANGRYLQPNIPAGVM-AIFGQA 607
Query: 390 DFTGRLPVTWYRSVQRLPMNVADNTYDPLFPLGFGLTYKKEKSL 433
G LPV SV + P N L+PLG+GL K + L
Sbjct: 608 KPKGTLPVD-IPSVTK-PGNT-------LYPLGYGLNIKTGRPL 642
>pdb|3LK6|A Chain A, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|B Chain B, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|C Chain C, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|D Chain D, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
Length = 616
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 102/464 (21%), Positives = 190/464 (40%), Gaps = 90/464 (19%)
Query: 26 RNNVIACAKHFVGDGGTERGINEGNTISTY--DDLEKIHMAPYLDCISQGVCTIMASYSS 83
R ++ + KHF G G T+ + G + ++ + L ++ + P+ I G +M ++
Sbjct: 187 RQDIASALKHFPGHGDTDVDSHYGLPLVSHGQERLREVELYPFQKAIDAGADMVMTAHVQ 246
Query: 84 WNG-------RKLHADHFL---------LTEVLKNKLGFKGFVISDWEGLDRLSQPHGSN 127
+ KL L +T +L+ ++GF G ++++ + ++ G
Sbjct: 247 FPAFDDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMGFNGVIVTNALNMKAIADHFGQ- 305
Query: 128 YRYCISTAVNAGIDMVMVP---------HRFDQFFEDLTYLVESGKVPMSRIDDAVERIL 178
+ AV AG+D+ ++P +F + + L V++G +P +I+++VERI+
Sbjct: 306 -EEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERII 364
Query: 179 RVKFVAGLFEYPFSDKS------LLNIVGCKLHRELAREAVRKSLVLLKNGKKPEKPFLP 232
+K G++ SD + IVG K H + ++ K++ +LKN ++ PF P
Sbjct: 365 SLKIKRGMYPARNSDSTKEKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKN-EQHTLPFKP 423
Query: 233 LDRNAKRILVVGTHADDLGYQCGGWTKTWFGMSGKITIGTTILEAVKEAVGDETEVIYEK 292
+ RIL+V + + Q +T + + I L + A ++
Sbjct: 424 --KKGSRILIVAPYEE----QTASIEQTIHDLIKRKKIKPVSLSKMNFASQVFKTEHEKQ 477
Query: 293 YPSPDTFVAGDFSFAIAAVGEEPYA------ETLGDNSELIIPLNGGDVISLVAERIPTL 346
D + G + V +P +T+ D+S+ + V R
Sbjct: 478 VKEADYIITGSY-----VVKNDPVVNDGVIDDTISDSSKW----------ATVFPRAVMK 522
Query: 347 AILVSGRPLVL-------EPQLLEKADALVAA----------WLPGSEGSGIADVVFGDH 389
A L +P VL + E+A AL+A +L + +G+ +FG
Sbjct: 523 AALQHNKPFVLMSLRNPYDAANFEEAKALIAVYGFKGYANGRYLQPNIPAGVM-AIFGQA 581
Query: 390 DFTGRLPVTWYRSVQRLPMNVADNTYDPLFPLGFGLTYKKEKSL 433
G LPV SV + P N L+PLG+GL K + L
Sbjct: 582 KPKGTLPVD-IPSVTK-PGNT-------LYPLGYGLNIKTGRPL 616
>pdb|4GYJ|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYJ|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYK|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
pdb|4GYK|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
Length = 648
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 102/464 (21%), Positives = 190/464 (40%), Gaps = 90/464 (19%)
Query: 26 RNNVIACAKHFVGDGGTERGINEGNTISTY--DDLEKIHMAPYLDCISQGVCTIMASYSS 83
R ++ + KHF G G T+ + G + ++ + L ++ + P+ I G +M ++
Sbjct: 217 RQDIASALKHFPGHGDTDVDSHYGLPLVSHGQERLREVELYPFQKAIDAGADMVMTAHVQ 276
Query: 84 WNG-------RKLHADHFL---------LTEVLKNKLGFKGFVISDWEGLDRLSQPHGSN 127
+ KL L +T +L+ ++GF G ++++ + ++ G
Sbjct: 277 FPAFDDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMGFNGVIVTNALNMKAIADHFGQ- 335
Query: 128 YRYCISTAVNAGIDMVMVP---------HRFDQFFEDLTYLVESGKVPMSRIDDAVERIL 178
+ AV AG+D+ ++P +F + + L V++G +P +I+++VERI+
Sbjct: 336 -EEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERII 394
Query: 179 RVKFVAGLFEYPFSDKS------LLNIVGCKLHRELAREAVRKSLVLLKNGKKPEKPFLP 232
+K G++ SD + IVG K H + ++ K++ +LKN ++ PF P
Sbjct: 395 SLKIKRGMYPARNSDSTKEKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKN-EQHTLPFKP 453
Query: 233 LDRNAKRILVVGTHADDLGYQCGGWTKTWFGMSGKITIGTTILEAVKEAVGDETEVIYEK 292
+ RIL+V + + Q +T + + I L + A ++
Sbjct: 454 --KKGSRILIVAPYEE----QTASIEQTIHDLIKRKKIKPVSLSKMNFASQVFKTEHEKQ 507
Query: 293 YPSPDTFVAGDFSFAIAAVGEEPYA------ETLGDNSELIIPLNGGDVISLVAERIPTL 346
D + G + V +P +T+ D+S+ + V R
Sbjct: 508 VKEADYIITGSY-----VVKNDPVVNDGVIDDTISDSSKW----------ATVFPRAVMK 552
Query: 347 AILVSGRPLVL-------EPQLLEKADALVAA----------WLPGSEGSGIADVVFGDH 389
A L +P VL + E+A AL+A +L + +G+ +FG
Sbjct: 553 AALQHNKPFVLMSLRNPYDAANFEEAKALIAVYGFKGYANGRYLQPNIPAGVM-AIFGQA 611
Query: 390 DFTGRLPVTWYRSVQRLPMNVADNTYDPLFPLGFGLTYKKEKSL 433
G LPV SV + P N L+PLG+GL K + L
Sbjct: 612 KPKGTLPVD-IPSVTK-PGNT-------LYPLGYGLNIKTGRPL 646
>pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glycerol
pdb|2X41|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glucose
Length = 721
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 113/443 (25%), Positives = 188/443 (42%), Gaps = 109/443 (24%)
Query: 29 VIACAKHFVGDGG-TERGINEGNTISTYDDLEKIHMAPYLDCISQGV-CTIMASYSSWNG 86
V AC KHFV + T R + +TI + L +I++ + + + ++M++Y+ NG
Sbjct: 158 VGACIKHFVANNQETNRMVV--DTIVSERALREIYLRGFEIAVKKSKPWSVMSAYNKLNG 215
Query: 87 RKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRLSQPHGSNYRYCISTAVNAGIDMVM-- 144
+ + +LL +VL+ + GF+GFV+SDW D + + AG D++M
Sbjct: 216 KYCSQNEWLLKKVLREEWGFEGFVMSDWYAGDNPVE------------QLKAGNDLIMPG 263
Query: 145 -----VPHRFDQFFEDLTYLVESGKVPMSRIDDAVERILRVKFVAGLFE-YPFSDKSLLN 198
R D+ E++ ++ GK+ +D+ V IL+V A F+ Y +S+K L
Sbjct: 264 KAYQVNTERRDE-IEEIMEALKEGKLSEEVLDECVRNILKVLVNAPSFKNYRYSNKPDL- 321
Query: 199 IVGCKLHRELAREAVRKSLVLLKNGKKPEKPFLPLDRNAKRILVVGTHADDL--GYQCGG 256
+ H ++A EA + +VLL+N + LPL N+K I + GT + G G
Sbjct: 322 ----EKHAKVAYEAGAEGVVLLRN-----EEALPLSENSK-IALFGTGQIETIKGGTGSG 371
Query: 257 WTKTWFGMSGKITIGTTILEAVKEA---VGDETEVIYEKYPS------------------ 295
T + +S ILE +KE +E YE Y
Sbjct: 372 DTHPRYAIS--------ILEGIKERGLNFDEELAKTYEDYIKKMRETEEYKPRRDSWGTI 423
Query: 296 -----PDTFVA----------GDFS-FAIAAVGEEPYAET--------LGDNSELIIPLN 331
P+ F++ D + I+ + E Y D ++LI ++
Sbjct: 424 IKPKLPENFLSEKEIHKLAKKNDVAVIVISRISGEGYDRKPVKGDFYLSDDETDLIKTVS 483
Query: 332 ------GGDVISLVAERIPTLAILVSGRPLVLEPQLLEKADALVAAWLPGSE-GSGIADV 384
G VI L+ I + +VS R LV D ++ W G E G +ADV
Sbjct: 484 REFHEQGKKVIVLL--NIGSPVEVVSWRDLV---------DGILLVWQAGQETGRIVADV 532
Query: 385 VFGDHDFTGRLPVTWYRSVQRLP 407
+ G + +G+LP T+ R +P
Sbjct: 533 LTGRINPSGKLPTTFPRDYSDVP 555
>pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Alpha-D-Glucose
Length = 721
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 112/443 (25%), Positives = 187/443 (42%), Gaps = 109/443 (24%)
Query: 29 VIACAKHFVGDGG-TERGINEGNTISTYDDLEKIHMAPYLDCISQGV-CTIMASYSSWNG 86
V AC KHFV + T R + +TI + L +I++ + + + ++M++Y+ NG
Sbjct: 158 VGACIKHFVANNQETNRMVV--DTIVSERALREIYLRGFEIAVKKSKPWSVMSAYNKLNG 215
Query: 87 RKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRLSQPHGSNYRYCISTAVNAGIDMVM-- 144
+ + +LL +VL+ + GF+GFV+S W D + + AG D++M
Sbjct: 216 KYCSQNEWLLKKVLREEWGFEGFVMSAWYAGDNPVE------------QLKAGNDLIMPG 263
Query: 145 -----VPHRFDQFFEDLTYLVESGKVPMSRIDDAVERILRVKFVAGLFE-YPFSDKSLLN 198
R D+ E++ ++ GK+ +D+ V IL+V A F+ Y +S+K L
Sbjct: 264 KAYQVNTERRDE-IEEIMEALKEGKLSEEVLDECVRNILKVLVNAPSFKNYRYSNKPDL- 321
Query: 199 IVGCKLHRELAREAVRKSLVLLKNGKKPEKPFLPLDRNAKRILVVGTHADDL--GYQCGG 256
+ H ++A EA + +VLL+N + LPL N+K I + GT + G G
Sbjct: 322 ----EKHAKVAYEAGAEGVVLLRN-----EEALPLSENSK-IALFGTGQIETIKGGTGSG 371
Query: 257 WTKTWFGMSGKITIGTTILEAVKEA---VGDETEVIYEKYPS------------------ 295
T + +S ILE +KE +E YE Y
Sbjct: 372 DTHPRYAIS--------ILEGIKERGLNFDEELAKTYEDYIKKMRETEEYKPRRDSWGTI 423
Query: 296 -----PDTFVA----------GDFS-FAIAAVGEEPYAET--------LGDNSELIIPLN 331
P+ F++ D + I+ + E Y D ++LI ++
Sbjct: 424 IKPKLPENFLSEKEIHKLAKKNDVAVIVISRISGEGYDRKPVKGDFYLSDDETDLIKTVS 483
Query: 332 ------GGDVISLVAERIPTLAILVSGRPLVLEPQLLEKADALVAAWLPGSE-GSGIADV 384
G VI L+ I + +VS R LV D ++ W G E G +ADV
Sbjct: 484 REFHEQGKKVIVLL--NIGSPVEVVSWRDLV---------DGILLVWQAGQETGRIVADV 532
Query: 385 VFGDHDFTGRLPVTWYRSVQRLP 407
+ G + +G+LP T+ R +P
Sbjct: 533 LTGRINPSGKLPTTFPRDYSDVP 555
>pdb|3SQL|A Chain A, Crystal Structure Of Glycoside Hydrolase From
Synechococcus
pdb|3SQL|B Chain B, Crystal Structure Of Glycoside Hydrolase From
Synechococcus
pdb|3SQM|A Chain A, Crystal Structure Of Glycoside Hydrolase From
Synechococcus Complexed With N-Acetyl-D-Glucosamine
pdb|3SQM|B Chain B, Crystal Structure Of Glycoside Hydrolase From
Synechococcus Complexed With N-Acetyl-D-Glucosamine
pdb|3SQM|C Chain C, Crystal Structure Of Glycoside Hydrolase From
Synechococcus Complexed With N-Acetyl-D-Glucosamine
pdb|3SQM|D Chain D, Crystal Structure Of Glycoside Hydrolase From
Synechococcus Complexed With N-Acetyl-D-Glucosamine
Length = 535
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 24 AGRNNVIACAKHFVGDGGTERGINEGNTISTYDD--LEKIHMAPYLDCISQGVCTIMASY 81
A + V+ AKHF G G T + ++DD L + + P+ I GV + ++
Sbjct: 185 AQQYAVLTTAKHFPGHGDTATDSHLALPTISHDDTRLNTVELPPFKAAIQGGVDAVXNAH 244
Query: 82 ---SSWNGR-KLHADHFLLTEVLKNKLGFKGFVISD---WEGLDRLSQPHGSNYRYCIST 134
+W+ + +LT L++KLGFKG +++D G+ + + P +
Sbjct: 245 LXIPAWDQQYPATLSPAILTGQLRHKLGFKGLIVTDALVXGGITQFAAPD-----TVVVQ 299
Query: 135 AVNAGIDMVMVPHRFDQFFEDLTYLVESGKVPMSRIDDAVERILRVK 181
A+ AG D+++ P D + +++G++ SRI ++VERI + K
Sbjct: 300 AIAAGADILLXPPDVDGAIIAIETAIKTGQLSESRIYESVERIWQAK 346
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose.
pdb|4I3G|B Chain B, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose
Length = 829
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 98/241 (40%), Gaps = 48/241 (19%)
Query: 29 VIACAKHFVGDGGTERGINEGNTISTYDD-----LEKIHMAPYLDCISQGVCTIMASYSS 83
++ AKHF + E N S + L +I + G + M +Y+
Sbjct: 191 LMTTAKHFAANN------QENNRFSVNANVDEQTLREIEFPAFEASSKAGAASFMCAYNG 244
Query: 84 WNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRLSQPHGSNYRYCISTAVNAGIDMV 143
NG+ + LL VL+ + GF+G+V+SDW L+ P + A+ G+D
Sbjct: 245 LNGKPSCGNDELLNNVLRTQWGFQGWVMSDW-----LATPG--------TDAITKGLDQE 291
Query: 144 M--------------VPHRFDQFFEDLTYLVESGKVPMSRIDDAVERILRVKFVAGLFEY 189
M P +F F E L V +G VP + + + ERI+ GL
Sbjct: 292 MGVELPGDVPKGEPSPPAKF--FGEALKTAVLNGTVPEAAVTRSAERIVGQMEKFGLLLA 349
Query: 190 PFSDKSLLNIVGCKLHRELAREAVRKSLVLLKNGKKPEKPFLPLDRNA-KRILVVGTHAD 248
+ + + G + ++R+ VLL+N E LPL +A K I V+G A
Sbjct: 350 TPAPRPERDKAGAQ---AVSRKVAENGAVLLRN----EGQALPLAGDAGKSIAVIGPTAV 402
Query: 249 D 249
D
Sbjct: 403 D 403
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 27/132 (20%)
Query: 322 DNSELIIPLNGGDVISLVAERIPTLAILVSGRPLVLEPQLLEKADALVAAWLPGSEGS-G 380
D L +P +IS VA+ P ++++ VL P L K A++ W PG G+
Sbjct: 582 DRPNLSLPGTQDKLISAVADANPNTIVVLNTGSSVLMP-WLSKTRAVLDMWYPGQAGAEA 640
Query: 381 IADVVFGDHDFTGRL----------------PVTW----YRSVQRLPMNVADNTYD---- 416
A +++GD + +G+L P ++ + R ++V +D
Sbjct: 641 TAALLYGDVNPSGKLTQSFPAAENQHAVAGDPTSYPGVDNQQTYREGIHVGYRWFDKENV 700
Query: 417 -PLFPLGFGLTY 427
PLFP G GL+Y
Sbjct: 701 KPLFPFGHGLSY 712
>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|B Chain B, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|C Chain C, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|D Chain D, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
Length = 845
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 111/266 (41%), Gaps = 51/266 (19%)
Query: 2 TSIVSGLQGRPPKEHPKGYPYVAGRNNVIACAKHFVGDGGTERGINEGNTISTYDDLEKI 61
+S+V G+QG + A KHFV + ++ + N+I + L +I
Sbjct: 130 SSVVKGMQGE----------------GIAATVKHFVCNDLEDQRFS-SNSIVSERALREI 172
Query: 62 HMAPYLDCISQG--VCTIMASYSSWNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDR 119
++ P+ + VC IM +Y+ NG LL ++L+++ + G ++SDW G
Sbjct: 173 YLEPFRLAVKHANPVC-IMTAYNKVNGEHCSQSKKLLIDILRDEWKWDGMLMSDWFGT-- 229
Query: 120 LSQPHGSNYRYCISTAVNAGIDMVMV-PHRFDQFFEDLTYLVESGKVPMSRIDDAVERIL 178
Y + A+ G+D+ P R+ L ++ +DD V ++L
Sbjct: 230 ----------YTTAAAIKNGLDIEFPGPTRWRTRALVSHSLNSREQITTEDVDDRVRQVL 279
Query: 179 R-VKFVAGLFEY-------PFSDKSLLNIVGCKLHRELAREAVRKSLVLLKNGKKPEKPF 230
+ +KFV E P S + K +L R+ S+VLLKN +
Sbjct: 280 KMIKFVVDNLEKTGIVENGPESTSN-----NTKETSDLLRKIAADSIVLLKN----KNNI 330
Query: 231 LPLDRNAKRILVVGTHADDLGYQCGG 256
LPL + I+V+G +A GG
Sbjct: 331 LPL-KKEDNIIVIGPNAKAKTSSGGG 355
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 27/146 (18%)
Query: 307 AIAAVGEEPYAETLG-DNSELIIPLNGGDVISLVAERIPTLAIL-VSGRPLVLEPQLLEK 364
A+ +G ET G D + +P +++ V + P I+ SG P+ E LE
Sbjct: 577 AVLIIGLNGEWETEGYDRENMDLPKRTNELVRAVLKANPNTVIVNQSGTPV--EFPWLED 634
Query: 365 ADALVAAWLPGSE-GSGIADVVFGDHDFTGRLPVTWYRSVQRLP---------------- 407
A+ALV AW G+E G+ IADV++GD G+L ++W +Q P
Sbjct: 635 ANALVQAWYGGNELGNAIADVLYGDVVPNGKLSLSWPFKLQDNPAFLNFKTEFGRVIYGE 694
Query: 408 -MNVADNTYDPL-----FPLGFGLTY 427
+ V Y+ L FP G+GL+Y
Sbjct: 695 DIFVGYRYYEKLQRKVAFPFGYGLSY 720
>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|B Chain B, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|C Chain C, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|D Chain D, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
Length = 845
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 104/246 (42%), Gaps = 40/246 (16%)
Query: 21 PYVAGR-----------NNVIACAKHFVGDGGTERGINEGNTISTYDDLEKIHMAPYLDC 69
PY+AG + A KHFV + ++ + N+I + L +I++ P+
Sbjct: 122 PYLAGXATSSVVKGXQGEGIAATVKHFVCNDLEDQRFS-SNSIVSERALREIYLEPFRLA 180
Query: 70 ISQG--VCTIMASYSSWNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRLSQPHGSN 127
+ VC I +Y+ NG LL ++L+++ + G + SDW G
Sbjct: 181 VKHANPVC-IXTAYNKVNGEHCSQSKKLLIDILRDEWKWDGXLXSDWFGT---------- 229
Query: 128 YRYCISTAVNAGIDMVMV-PHRFDQFFEDLTYLVESGKVPMSRIDDAVERILR-VKFVAG 185
Y + A+ G+D+ P R+ L ++ +DD V ++L+ +KFV
Sbjct: 230 --YTTAAAIKNGLDIEFPGPTRWRTRALVSHSLNSREQITTEDVDDRVRQVLKXIKFVVD 287
Query: 186 LFE----YPFSDKSLLNIVGCKLHRELAREAVRKSLVLLKNGKKPEKPFLPLDRNAKRIL 241
E +S N K +L R+ S+VLLKN + LPL + I+
Sbjct: 288 NLEKTGIVENGPESTSN--NTKETSDLLRKIAADSIVLLKN----KNNILPL-KKEDNII 340
Query: 242 VVGTHA 247
V+G +A
Sbjct: 341 VIGPNA 346
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 27/146 (18%)
Query: 307 AIAAVGEEPYAETLG-DNSELIIPLNGGDVISLVAERIPTLAIL-VSGRPLVLEPQLLEK 364
A+ +G ET G D +P +++ V + P I+ SG P+ E LE
Sbjct: 577 AVLIIGLNGEWETEGYDRENXDLPKRTNELVRAVLKANPNTVIVNQSGTPV--EFPWLED 634
Query: 365 ADALVAAWLPGSE-GSGIADVVFGDHDFTGRLPVTWYRSVQRLP---------------- 407
A+ALV AW G+E G+ IADV++GD G+L ++W +Q P
Sbjct: 635 ANALVQAWYGGNELGNAIADVLYGDVVPNGKLSLSWPFKLQDNPAFLNFKTEFGRVIYGE 694
Query: 408 -MNVADNTYDPL-----FPLGFGLTY 427
+ V Y+ L FP G+GL+Y
Sbjct: 695 DIFVGYRYYEKLQRKVAFPFGYGLSY 720
>pdb|3GS6|A Chain A, Vibrio Cholerea Family 3 Glycoside Hydrolase (Nagz)in
Complex With N- Butyryl-Pugnac
pdb|3GSM|A Chain A, Vibrio Cholerae Family 3 Glycoside Hydrolase (Nagz) Bound
To N- Valeryl-Pugnac
Length = 340
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 34 KHFVGDGGTERGINEGNTISTYDDLEKI--HMAPYLDCISQGVCTIM----ASYSSWNGR 87
KHF G G I + + + YD+ E I MA + I GV M Y ++ +
Sbjct: 160 KHFPGHGAV---IADSHLETPYDERETIAQDMAIFRAQIEAGVLDAMMPAHVVYPHYDAQ 216
Query: 88 KLHADHFLLTEVLKNKLGFKGFVISD---WEGLDRLSQPHGSNYRYCISTAVNAGIDMVM 144
+ L +VL+ +LGFKG V SD EG + P +++ A+ AG DM++
Sbjct: 217 PASGSSYWLKQVLREELGFKGIVFSDDLSMEGAAVMGGPVERSHQ-----ALVAGCDMIL 271
Query: 145 VPHRFDQFFEDLTYL 159
+ ++ + E L L
Sbjct: 272 ICNKREAAVEVLDNL 286
>pdb|2OXN|A Chain A, Vibrio Cholerae Family 3 Glycoside Hydrolase (Nagz) In
Complex With Pugnac
Length = 340
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 34 KHFVGDGGTERGINEGNTISTYDDLEKI--HMAPYLDCISQGVCTIM----ASYSSWNGR 87
KHF G G I + + + YD+ E I MA + I GV M Y ++ +
Sbjct: 160 KHFPGHGAV---IADSHLETPYDERETIAQDMAIFRAQIEAGVLDAMMPAHVVYPHYDAQ 216
Query: 88 KLHADHFLLTEVLKNKLGFKGFVISD---WEGLDRLSQPHGSNYRYCISTAVNAGIDMVM 144
+ L +VL+ +LGFKG V SD EG + P +++ A+ AG DM++
Sbjct: 217 PASGSSYWLKQVLREELGFKGIVFSDDLSMEGAAVMGGPVERSHQ-----ALVAGCDMIL 271
Query: 145 VPHRFDQFFEDLTYL 159
+ ++ + E L L
Sbjct: 272 ICNKREAAVEVLDNL 286
>pdb|1Y65|A Chain A, Crystal Structure Of Beta-Hexosaminidase From Vibrio
Cholerae In Complex With N-Acetyl-D-Glucosamine To A
Resolution Of 1.85
Length = 342
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 34 KHFVGDGGTERGINEGNTISTYDDLEKI--HMAPYLDCISQGVCTIM----ASYSSWNGR 87
KHF G G I + + + YD+ E I MA + I GV M Y ++ +
Sbjct: 162 KHFPGHGAV---IADSHLETPYDERETIAQDMAIFRAQIEAGVLDAMMPAHVVYPHYDAQ 218
Query: 88 KLHADHFLLTEVLKNKLGFKGFVISD---WEGLDRLSQPHGSNYRYCISTAVNAGIDMVM 144
+ L +VL+ +LGFKG V SD EG + P +++ A+ AG DM++
Sbjct: 219 PASGSSYWLKQVLREELGFKGIVFSDDLSMEGAAVMGGPVERSHQ-----ALVAGCDMIL 273
Query: 145 VPHRFDQFFEDLTYL 159
+ ++ + E L L
Sbjct: 274 ICNKREAAVEVLDNL 288
>pdb|3TEV|A Chain A, The Crystal Structure Of Glycosyl Hydrolase From
Deinococcus Radiodurans R1
pdb|3TEV|B Chain B, The Crystal Structure Of Glycosyl Hydrolase From
Deinococcus Radiodurans R1
Length = 351
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 13/126 (10%)
Query: 26 RNNVIACAKHFVGDGGTERGINEG--NTISTYDDLEKIHMAPYLDCISQGVCTIMASYSS 83
R V CAKHF G G T + + + +L+ +AP+ + + I ++
Sbjct: 170 REGVAPCAKHFPGHGDTHQDSHLALPRVSKSRAELDAGELAPFRALLPE-TPAIXTAHIV 228
Query: 84 WNGRKLHADH------FLLTEVLKNKLGFKGFVISDWEGLDRLSQPHGSNYRYCISTAVN 137
++ L A+H +LT +L+ + G+ G +++D G + +G A+
Sbjct: 229 YDA--LDAEHPATLSPRILTGLLREEWGYDGVIVTDSXGXQAIDANYGRG--EAAVRALR 284
Query: 138 AGIDMV 143
AG D+V
Sbjct: 285 AGADLV 290
>pdb|1TR9|A Chain A, Structure Of Beta-Hexosaminidase From Vibrio Cholerae
Length = 341
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 17/135 (12%)
Query: 34 KHFVGDGGTERGINEGNTISTYDDLEKIHM--APYLDCISQGVCTIMAS----YSSWNGR 87
KHF G G I + + + YD+ E I A + I GV Y ++ +
Sbjct: 161 KHFPGHGAV---IADSHLETPYDERETIAQDXAIFRAQIEAGVLDAXXPAHVVYPHYDAQ 217
Query: 88 KLHADHFLLTEVLKNKLGFKGFVISD---WEGLDRLSQPHGSNYRYCISTAVNAGIDMVM 144
+ L +VL+ +LGFKG V SD EG P +++ A+ AG D ++
Sbjct: 218 PASGSSYWLKQVLREELGFKGIVFSDDLSXEGAAVXGGPVERSHQ-----ALVAGCDXIL 272
Query: 145 VPHRFDQFFEDLTYL 159
+ ++ + E L L
Sbjct: 273 ICNKREAAVEVLDNL 287
>pdb|4G6C|A Chain A, Crystal Structure Of Beta-Hexosaminidase 1 From
Burkholderia Cenocepacia J2315
pdb|4G6C|B Chain B, Crystal Structure Of Beta-Hexosaminidase 1 From
Burkholderia Cenocepacia J2315
Length = 348
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 11/133 (8%)
Query: 23 VAGRNNVIACAKHFVGDGGTERGINEG--NTISTYDDLEKIHMAPYLDCISQGVCTIMAS 80
+AG N C KHF G G E + T D + + +APY D + + ++ +
Sbjct: 168 LAGMAN---CGKHFPGHGFAEADSHVALPTDDRTLDAILEQDVAPY-DWLGLSLAAVIPA 223
Query: 81 ---YSSWNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRLSQPHGSNYRYCISTAVN 137
Y+ + R L ++L+ KLGF G + SD L + G A+
Sbjct: 224 HVIYTQVDKRPAGFSRVWLQDILRGKLGFTGAIFSD--DLSMEAAREGGTLTQAADAALA 281
Query: 138 AGIDMVMVPHRFD 150
AG DMV+V ++ D
Sbjct: 282 AGCDMVLVCNQPD 294
>pdb|4GNV|A Chain A, Crystal Structure Of Beta-Hexosaminidase 1 From
Burkholderia Cenocepacia J2315 With Bound
N-Acetyl-D-Glucosamine
pdb|4GNV|B Chain B, Crystal Structure Of Beta-Hexosaminidase 1 From
Burkholderia Cenocepacia J2315 With Bound
N-Acetyl-D-Glucosamine
Length = 350
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 11/133 (8%)
Query: 23 VAGRNNVIACAKHFVGDGGTERGINEG--NTISTYDDLEKIHMAPYLDCISQGVCTIMAS 80
+AG N C KHF G G E + T D + + +APY D + + ++ +
Sbjct: 170 LAGMAN---CGKHFPGHGFAEADSHVALPTDDRTLDAILEQDVAPY-DWLGLSLAAVIPA 225
Query: 81 ---YSSWNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRLSQPHGSNYRYCISTAVN 137
Y+ + R L ++L+ KLGF G + SD L + G A+
Sbjct: 226 HVIYTQVDKRPAGFSRVWLQDILRGKLGFTGAIFSD--DLSMEAAREGGTLTQAADAALA 283
Query: 138 AGIDMVMVPHRFD 150
AG DMV+V ++ D
Sbjct: 284 AGCDMVLVCNQPD 296
>pdb|3AUZ|A Chain A, Crystal Structure Of Mre11 With Manganese
Length = 333
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
Query: 93 HFLLTEVLKNKLGFKGFVISDWEGLDRLSQPHGSNYRYCISTAVNAGIDMVMVPHRFDQF 152
H + + N LG++ + + D E + +++ CI + D+V+ H D
Sbjct: 20 HMMFVHIADNHLGYRQYNLDDRE------KDIYDSFKLCIKKILEIKPDVVL--HSGD-L 70
Query: 153 FEDLTYLVESGKVPMSRIDDAVERILRVKFVAGLFEYP 190
F DL V++ ++ M E ++V VAG E P
Sbjct: 71 FNDLRPPVKALRIAMQAFKKLHENNIKVYIVAGNHEMP 108
>pdb|3AV0|A Chain A, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 386
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
Query: 93 HFLLTEVLKNKLGFKGFVISDWEGLDRLSQPHGSNYRYCISTAVNAGIDMVMVPHRFDQF 152
H + + N LG++ + + D E + +++ CI + D+V+ H D
Sbjct: 20 HMMFVHIADNHLGYRQYNLDDRE------KDIYDSFKLCIKKILEIKPDVVL--HSGD-L 70
Query: 153 FEDLTYLVESGKVPMSRIDDAVERILRVKFVAGLFEYP 190
F DL V++ ++ M E ++V VAG E P
Sbjct: 71 FNDLRPPVKALRIAMQAFKKLHENNIKVYIVAGNHEMP 108
>pdb|2GL5|A Chain A, Crystal Structure Of Putative Dehydratase From Salmonella
Thyphimurium
pdb|2GL5|B Chain B, Crystal Structure Of Putative Dehydratase From Salmonella
Thyphimurium
Length = 410
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 241 LVVGTHADDLGYQCGGWTKTWFGMSGKITIGTTILEAVKEAVGDETEVIYEKYPSPDTFV 300
L + + DD +Q + ++ ++ +G + A++EA+GD+ ++I E + T
Sbjct: 174 LEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEARIAAMREAMGDDADIIVEIHSLLGTNS 233
Query: 301 AGDFSFAIAA----VGEEPYAETLGDNSELI-----IPLNGGD 334
A F+ AI + EEP DN + + IP+ G+
Sbjct: 234 AIQFAKAIEKYRIFLYEEPIHPLNSDNMQKVSRSTTIPIATGE 276
>pdb|4E6M|A Chain A, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
pdb|4E6M|B Chain B, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
pdb|4E6M|C Chain C, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
pdb|4E6M|D Chain D, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
pdb|4E6M|E Chain E, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
pdb|4E6M|F Chain F, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
pdb|4E6M|G Chain G, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
pdb|4E6M|H Chain H, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
Length = 423
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 241 LVVGTHADDLGYQCGGWTKTWFGMSGKITIGTTILEAVKEAVGDETEVIYEKYPSPDTFV 300
L + + DD +Q + ++ ++ +G + A++EA+GD+ ++I E + T
Sbjct: 195 LEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEARIAAMREAMGDDADIIVEIHSLLGTNS 254
Query: 301 AGDFSFAIAA----VGEEPYAETLGDNSELI-----IPLNGGD 334
A F+ AI + EEP DN + + IP+ G+
Sbjct: 255 AIQFAKAIEKYRIFLYEEPIHPLNSDNMQKVSRSTTIPIATGE 297
>pdb|2OX4|A Chain A, Crystal Structure Of Putative Dehydratase From Zymomonas
Mobilis Zm4
pdb|2OX4|B Chain B, Crystal Structure Of Putative Dehydratase From Zymomonas
Mobilis Zm4
pdb|2OX4|C Chain C, Crystal Structure Of Putative Dehydratase From Zymomonas
Mobilis Zm4
pdb|2OX4|D Chain D, Crystal Structure Of Putative Dehydratase From Zymomonas
Mobilis Zm4
pdb|2OX4|E Chain E, Crystal Structure Of Putative Dehydratase From Zymomonas
Mobilis Zm4
pdb|2OX4|F Chain F, Crystal Structure Of Putative Dehydratase From Zymomonas
Mobilis Zm4
pdb|2OX4|G Chain G, Crystal Structure Of Putative Dehydratase From Zymomonas
Mobilis Zm4
pdb|2OX4|H Chain H, Crystal Structure Of Putative Dehydratase From Zymomonas
Mobilis Zm4
Length = 403
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 265 SGKITIGTTILEAVKEAVGDETEVIYEKYPSPDTFVAGDFSFAI 308
S I IG +EA++ AVG + ++I E + D A F+ AI
Sbjct: 189 SETIKIGVERVEAIRNAVGPDVDIIVENHGHTDLVSAIQFAKAI 232
>pdb|2H3H|A Chain A, Crystal Structure Of The Liganded Form Of Thermotoga
Maritima Glucose Binding Protein
pdb|2H3H|B Chain B, Crystal Structure Of The Liganded Form Of Thermotoga
Maritima Glucose Binding Protein
Length = 313
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 229 PFLPLDRNAK---RILVVGTHADDLGYQCGGWTKTWFGMSGKITIGTTILEAV 278
P + LD ++ R + +GT GY G K G GK+ IGT L A+
Sbjct: 84 PVVTLDTDSPDSGRYVYIGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAM 136
>pdb|4GVF|A Chain A, Crystal Structure Of Salmonella Typhimurium Family 3
Glycoside Hydrolase (nagz) Bound To Glcnac
pdb|4GVF|B Chain B, Crystal Structure Of Salmonella Typhimurium Family 3
Glycoside Hydrolase (nagz) Bound To Glcnac
pdb|4GVG|A Chain A, Crystal Structure Of Salmonella Typhimurium Family 3
Glycoside Hydrolase (Nagz)
pdb|4GVG|B Chain B, Crystal Structure Of Salmonella Typhimurium Family 3
Glycoside Hydrolase (Nagz)
pdb|4GVH|A Chain A, Crystal Structure Of Salmonella Typhimurium Family 3
Glycoside Hydrolase (Nagz) Covalently Bound To
5-Fluoro-Glcnac.
pdb|4GVH|B Chain B, Crystal Structure Of Salmonella Typhimurium Family 3
Glycoside Hydrolase (Nagz) Covalently Bound To
5-Fluoro-Glcnac
Length = 349
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 81 YSSWNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRLSQPHGSNYRYCISTAVNAGI 140
Y + + R + L VL+ +LGF G + SD L +Y +++AG
Sbjct: 216 YRAIDPRPASGSPYWLKTVLRQELGFDGVIFSD--DLSMEGAAIMGSYAERAQASLDAGC 273
Query: 141 DMVMV 145
DM++V
Sbjct: 274 DMILV 278
>pdb|3C6Q|B Chain B, Apo And Ligand-Bound Form Of A Thermophilic GlucoseXYLOSE
BINDING Protein
pdb|3C6Q|A Chain A, Apo And Ligand-Bound Form Of A Thermophilic GlucoseXYLOSE
BINDING Protein
pdb|3C6Q|C Chain C, Apo And Ligand-Bound Form Of A Thermophilic GlucoseXYLOSE
BINDING Protein
pdb|3C6Q|D Chain D, Apo And Ligand-Bound Form Of A Thermophilic GlucoseXYLOSE
BINDING Protein
Length = 311
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 13/74 (17%)
Query: 229 PFLPLDRNAK---RILVVGTHADDLGYQCGGWTKTWFGMSGKITIGTTILEAV------- 278
P + LD ++ R + +GT GY G K G GK+ IGT L A+
Sbjct: 84 PVVTLDTDSPDSGRYVYIGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQ 143
Query: 279 --KEAVGD-ETEVI 289
K+A+ D E E++
Sbjct: 144 GFKDAIKDSEIEIV 157
>pdb|3R3L|A Chain A, Structure Of Np Protein From Lassa Av Strain
pdb|3R3L|B Chain B, Structure Of Np Protein From Lassa Av Strain
pdb|3R3L|C Chain C, Structure Of Np Protein From Lassa Av Strain
Length = 582
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 25/85 (29%)
Query: 117 LDRLSQPHG--------------SNYRYCISTAVNAGIDMVMVPHRFDQFFEDLTYLVES 162
LDRL+Q H S Y + + AV AG M+ D ++E+
Sbjct: 219 LDRLTQSHPILNMIDTKKSSLNISGYNFSLGAAVKAGACML-----------DGGNMLET 267
Query: 163 GKVPMSRIDDAVERILRVKFVAGLF 187
KV +D ++ IL+VK G+F
Sbjct: 268 IKVSPQSMDGILKSILKVKRALGMF 292
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,233,043
Number of Sequences: 62578
Number of extensions: 636956
Number of successful extensions: 1563
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1496
Number of HSP's gapped (non-prelim): 65
length of query: 434
length of database: 14,973,337
effective HSP length: 102
effective length of query: 332
effective length of database: 8,590,381
effective search space: 2852006492
effective search space used: 2852006492
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)