Query 013886
Match_columns 434
No_of_seqs 219 out of 1612
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 08:22:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013886.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013886hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15098 beta-D-glucoside gluc 100.0 3E-89 6.6E-94 738.6 34.8 413 5-432 171-653 (765)
2 PLN03080 Probable beta-xylosid 100.0 6.1E-88 1.3E-92 726.2 34.2 385 28-432 209-638 (779)
3 COG1472 BglX Beta-glucosidase- 100.0 1.5E-47 3.2E-52 383.8 13.5 233 5-258 135-372 (397)
4 PF00933 Glyco_hydro_3: Glycos 100.0 3.3E-41 7.1E-46 329.5 5.6 175 4-180 122-299 (299)
5 PF01915 Glyco_hydro_3_C: Glyc 100.0 2.9E-38 6.3E-43 297.3 12.9 201 217-429 1-227 (227)
6 PRK05337 beta-hexosaminidase; 100.0 1.4E-35 3E-40 292.0 11.5 169 5-184 134-309 (337)
7 PF05690 ThiG: Thiazole biosyn 81.5 4.4 9.5E-05 37.9 6.3 90 62-164 133-228 (247)
8 CHL00162 thiG thiamin biosynth 76.0 13 0.00029 35.2 7.8 90 62-164 147-242 (267)
9 COG2022 ThiG Uncharacterized e 62.1 28 0.00061 32.6 6.7 86 66-164 144-235 (262)
10 cd04728 ThiG Thiazole synthase 61.3 38 0.00082 32.1 7.6 84 66-164 137-228 (248)
11 cd00938 HisRS_RNA HisRS_RNA bi 60.9 21 0.00046 24.3 4.2 30 156-185 13-42 (45)
12 PRK11840 bifunctional sulfur c 58.9 29 0.00064 34.2 6.7 86 65-164 210-302 (326)
13 PF13653 GDPD_2: Glycerophosph 57.4 7.7 0.00017 24.0 1.5 17 65-81 12-28 (30)
14 PF09851 SHOCT: Short C-termin 54.0 37 0.0008 21.0 4.3 27 152-178 4-30 (31)
15 PRK13533 7-cyano-7-deazaguanin 51.7 36 0.00079 35.7 6.4 46 100-145 75-121 (487)
16 PRK01008 queuine tRNA-ribosylt 46.4 32 0.00069 34.8 4.8 18 100-117 76-93 (372)
17 PRK00208 thiG thiazole synthas 45.9 1.2E+02 0.0025 28.9 8.1 84 65-163 136-227 (250)
18 cd06533 Glyco_transf_WecG_TagA 43.9 1E+02 0.0022 27.3 7.3 42 300-357 96-137 (171)
19 PF04481 DUF561: Protein of un 43.1 88 0.0019 29.1 6.6 79 129-223 71-152 (242)
20 PRK13534 7-cyano-7-deazaguanin 42.0 60 0.0013 35.4 6.4 73 71-145 46-120 (639)
21 PF09373 PMBR: Pseudomurein-bi 41.2 52 0.0011 20.7 3.6 26 162-187 2-27 (33)
22 PF08044 DUF1707: Domain of un 38.4 61 0.0013 22.9 3.9 34 150-183 9-42 (53)
23 PRK05848 nicotinate-nucleotide 37.3 1.1E+02 0.0024 29.5 6.8 36 100-147 175-210 (273)
24 COG2003 RadC DNA repair protei 37.2 32 0.0007 32.0 3.0 52 66-117 158-210 (224)
25 PLN00164 glucosyltransferase; 36.4 67 0.0015 33.7 5.6 70 106-178 338-429 (480)
26 PLN03007 UDP-glucosyltransfera 35.9 80 0.0017 33.1 6.1 69 107-178 345-438 (482)
27 PLN02764 glycosyltransferase f 34.8 89 0.0019 32.5 6.2 71 106-179 316-406 (453)
28 COG0486 ThdF Predicted GTPase 34.2 5.6E+02 0.012 26.7 13.6 101 69-190 60-178 (454)
29 TIGR01305 GMP_reduct_1 guanosi 32.8 97 0.0021 30.9 5.6 70 66-146 164-241 (343)
30 COG1647 Esterase/lipase [Gener 29.7 57 0.0012 30.5 3.3 93 4-110 20-112 (243)
31 COG0157 NadC Nicotinate-nucleo 29.2 99 0.0022 29.9 4.9 18 130-147 199-216 (280)
32 KOG3191 Predicted N6-DNA-methy 28.5 34 0.00073 31.0 1.5 56 332-390 99-155 (209)
33 PRK00112 tgt queuine tRNA-ribo 28.4 1E+02 0.0022 31.2 5.2 71 100-181 78-168 (366)
34 PLN03004 UDP-glycosyltransfera 28.4 1.1E+02 0.0023 31.9 5.5 70 107-179 334-423 (451)
35 PLN02208 glycosyltransferase f 25.7 1.7E+02 0.0036 30.4 6.3 69 107-178 311-399 (442)
36 PRK15452 putative protease; Pr 25.4 1.2E+02 0.0026 31.6 5.1 25 96-120 78-104 (443)
37 PLN02670 transferase, transfer 24.9 1.2E+02 0.0026 31.7 5.2 71 106-179 338-428 (472)
38 TIGR00430 Q_tRNA_tgt tRNA-guan 24.5 1.7E+02 0.0038 29.5 6.0 71 100-181 74-164 (368)
39 TIGR00449 tgt_general tRNA-gua 24.3 1.5E+02 0.0032 30.0 5.4 72 100-182 74-165 (367)
40 PLN03015 UDP-glucosyl transfer 23.8 2.1E+02 0.0044 30.1 6.6 72 105-179 333-425 (470)
41 PF08262 Lem_TRP: Leucophaea m 23.5 31 0.00067 15.7 0.2 6 104-109 4-9 (10)
42 PLN00414 glycosyltransferase f 23.2 1.9E+02 0.0041 30.0 6.2 72 105-179 310-401 (446)
43 PF03808 Glyco_tran_WecB: Glyc 22.1 3.1E+02 0.0067 24.2 6.6 41 301-357 99-139 (172)
44 PRK06096 molybdenum transport 22.0 1.8E+02 0.0039 28.3 5.3 18 130-147 200-217 (284)
45 cd00945 Aldolase_Class_I Class 21.8 5.4E+02 0.012 22.4 8.4 81 129-222 68-148 (201)
46 PLN02410 UDP-glucoronosyl/UDP- 21.8 2E+02 0.0043 29.9 6.0 49 130-178 353-408 (451)
47 PF05636 HIGH_NTase1: HIGH Nuc 20.6 1.1E+02 0.0024 31.1 3.8 14 131-144 55-68 (388)
48 PLN02554 UDP-glycosyltransfera 20.3 1.7E+02 0.0036 30.7 5.2 49 131-179 372-439 (481)
49 PF08261 Carcinustatin: Carcin 20.2 49 0.0011 13.9 0.5 6 420-425 3-8 (8)
50 cd06557 KPHMT-like Ketopantoat 20.1 7.6E+02 0.016 23.5 11.8 44 100-143 27-74 (254)
No 1
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=100.00 E-value=3e-89 Score=738.61 Aligned_cols=413 Identities=33% Similarity=0.550 Sum_probs=350.6
Q ss_pred eeccCCCCCCCCCCCcccccC--C------CceeeeecccccCCCCcCCCcccCCCCCHHHHHHhchHHHHHHHHcCCCc
Q 013886 5 VSGLQGRPPKEHPKGYPYVAG--R------NNVIACAKHFVGDGGTERGINEGNTISTYDDLEKIHMAPYLDCISQGVCT 76 (434)
Q Consensus 5 v~g~qg~~~~~~~~g~a~~~G--~------~gv~a~~KHFpg~g~~~~~~~~~~~~~~~~~l~e~~l~PF~~~i~~g~~~ 76 (434)
.|.|..||..++++|.+|++| + .||++|+|||||||.++.++|.....+++++|++.||+||+++|++|+.+
T Consensus 171 ~rsfgeDP~lv~~~~~a~v~GlQ~~~~~~~~gV~a~~KHFpG~g~~~~~~~~~~~~~~~~~l~e~~l~PF~~ai~ag~~~ 250 (765)
T PRK15098 171 SEGFGEDTYLTSIMGKTMVKAMQGKSPADRYSVMTSVKHFALYGAVEGGRDYNTVDMSPQRMFNDYLPPYKAGLDAGSGG 250 (765)
T ss_pred ccCcCCCHHHHHHHHHHHHHHHcCCCCCCCCCEEEECcEEeCCCCcccCccCccCcCCHHHHHHHHHHHHHHHHHhCCCE
Confidence 366666777777777888877 3 28999999999999888887777777899999999999999999999999
Q ss_pred eeecccCCCCccCCCCHHHHHHHHHhhcCCCeEEEcChhhhhhhcCCCC--CChHHHHHHHHHcCCCeecCCCChHHHHH
Q 013886 77 IMASYSSWNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRLSQPHG--SNYRYCISTAVNAGIDMVMVPHRFDQFFE 154 (434)
Q Consensus 77 vM~sy~~~~g~pa~~s~~~l~~iLR~~~gf~G~viSD~~~m~~~~~~~~--~~~~~~~~~al~AG~D~~l~~~~~~~~~~ 154 (434)
|||||+.+||.|+|+|+++|+++||+||||+|+|||||++|.++.. ++ .+..+++++||+||+||+|.+.. +.+
T Consensus 251 VM~sy~~~~g~pa~~s~~ll~~lLR~e~GF~G~VvSD~~a~~~l~~-~~~~~~~~ea~~~Al~AG~Dl~m~~~~---~~~ 326 (765)
T PRK15098 251 VMVALNSLNGTPATSDSWLLKDLLRDQWGFKGITVSDHGAIKELIK-HGVAADPEDAVRLALKSGIDMSMSDEY---YSK 326 (765)
T ss_pred EEecccCcCCEeccCCHHHHHHHHHHhcCCCcEEEecchhHHHHHh-cccCCCHHHHHHHHHHcCCCcccCchh---HHH
Confidence 9999999999999999999999999999999999999999998764 33 35678899999999999986532 335
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCCCCcch------hhhhcchhHHHHHHHHHhccEEEcccCCCCCC
Q 013886 155 DLTYLVESGKVPMSRIDDAVERILRVKFVAGLFEYPFSDKSL------LNIVGCKLHRELAREAVRKSLVLLKNGKKPEK 228 (434)
Q Consensus 155 ~l~~av~~g~~~~~~id~a~~ril~~k~~~gl~~~p~~~~~~------~~~~~~~~~~~la~~~a~~sivLLKN~~~~~~ 228 (434)
.|.+||++|.+++++||+|++|||++|+++|+|++|+.+... ...+.+++|+++++++|++||||||| ++
T Consensus 327 ~l~~av~~G~i~~~~id~av~RIL~~k~~~glf~~p~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~sivLLKN----~~ 402 (765)
T PRK15098 327 YLPGLVKSGKVTMAELDDAVRHVLNVKYDMGLFNDPYSHLGPKESDPVDTNAESRLHRKEAREVARESLVLLKN----RL 402 (765)
T ss_pred HHHHHHHcCcCCHHHHHHHHHHHHHHHHHhCCCCCCccccccccccccccccCCHHHHHHHHHHHHhcEEEEec----CC
Confidence 789999999999999999999999999999999999854311 12345789999999999999999999 67
Q ss_pred CccCCCCCCCeEEEEeeccccccccCCCCceeccCCCCCccccCCHHHHHHhHcCCCcEEEEccCCC-------------
Q 013886 229 PFLPLDRNAKRILVVGTHADDLGYQCGGWTKTWFGMSGKITIGTTILEAVKEAVGDETEVIYEKYPS------------- 295 (434)
Q Consensus 229 ~~LPL~~~~~kIavig~~a~~~~~~~g~~~~~~~g~~g~~~~~~t~~~~l~~~~~~~~~v~~~~~~~------------- 295 (434)
++|||+++ +||+|+|++++....++|+|+.. +.+.+..|++++|++++.....+.|..+.+
T Consensus 403 ~~LPL~~~-~~IaviG~~a~~~~~~~G~~s~~-----~~~~~~vt~~~gl~~~~~~~~~v~y~~G~~~~~~~~~~~~~~~ 476 (765)
T PRK15098 403 ETLPLKKS-GTIAVVGPLADSQRDVMGSWSAA-----GVADQSVTVLQGIKNAVGDKAKVLYAKGANVTDDKGIIDFLNQ 476 (765)
T ss_pred CCCCCCCC-CEEEEECCCcccccccCCCcccc-----CccCCCCCHHHHHHHhhcCCceEEEecccccccCcccchhhhc
Confidence 89999854 79999999998876677776532 233556899999999876545666654421
Q ss_pred -----------------hhhhhcCCCceEEEEeeCCCCccccC-CCCCccCCcchHHHHHHHHc-CCCeEEEEEcCCcee
Q 013886 296 -----------------PDTFVAGDFSFAIAAVGEEPYAETLG-DNSELIIPLNGGDVISLVAE-RIPTLAILVSGRPLV 356 (434)
Q Consensus 296 -----------------~~~~~a~~ad~~iv~~g~~~~~~~~g-d~~~l~l~~~q~~li~~v~~-~~~~vvV~~~g~P~~ 356 (434)
.....++.+|++||++|.....+.|+ ||.++.||+.|.+||+++++ ++|+|||+++|+||+
T Consensus 477 ~~~~~~~~~~~~~~~~~~a~~~A~~aD~vIv~vg~~~~~~~E~~Dr~~l~Lp~~Q~~Li~~v~~~~~~vVvVl~~g~P~~ 556 (765)
T PRK15098 477 YEEAVKVDPRSPQAMIDEAVQAAKQADVVVAVVGEAQGMAHEASSRTDITIPQSQRDLIAALKATGKPLVLVLMNGRPLA 556 (765)
T ss_pred cccccccccccchhhHHHHHHHHhcCCEEEEEEcCCCCccccCCCcccccCCHHHHHHHHHHHHhCcCEEEEEeCCceee
Confidence 11223689999999999987666776 99999999999999999987 889999999999999
Q ss_pred cCccccCCCcEEEEccCCCch-HHHHHHHHhcCCCCCcccccccccccCCcCccC-----------------CCCCC---
Q 013886 357 LEPQLLEKADALVAAWLPGSE-GSGIADVVFGDHDFTGRLPVTWYRSVQRLPMNV-----------------ADNTY--- 415 (434)
Q Consensus 357 l~~~~~~~~~ail~a~~~g~~-~~aiadvL~G~~~PsGkLPvT~p~~~~~~p~~~-----------------~~~~~--- 415 (434)
+.++ .++++|||++|+||++ |+|+|+||||++|||||||+|||++..++|.++ +||||
T Consensus 557 l~~~-~~~v~AiL~a~~pG~e~G~AiAdvLfG~~nPsGkLPvT~p~~~~~~P~~~~~~~~~~~y~e~~~~~y~yry~d~~ 635 (765)
T PRK15098 557 LVKE-DQQADAILETWFAGTEGGNAIADVLFGDYNPSGKLPMSFPRSVGQIPVYYNHLNTGRPYNPDKPNKYTSRYFDEA 635 (765)
T ss_pred ccch-hhcCCeEEeecCCchhhhHHHHHHHcCCCCCCCCCccceeCCCCcCccccccCCCCCccccCcccccccceeccC
Confidence 9533 3589999999999999 999999999999999999999999999988632 34777
Q ss_pred -CcccccccCCCCCCCCC
Q 013886 416 -DPLFPLGFGLTYKKEKS 432 (434)
Q Consensus 416 -~~~ypFG~GLsYt~~~~ 432 (434)
+|+||||||||||+|++
T Consensus 636 ~~plypFG~GLSYT~F~y 653 (765)
T PRK15098 636 NGPLYPFGYGLSYTTFTV 653 (765)
T ss_pred CCccccccCCCCCccEEe
Confidence 48999999999999974
No 2
>PLN03080 Probable beta-xylosidase; Provisional
Probab=100.00 E-value=6.1e-88 Score=726.19 Aligned_cols=385 Identities=28% Similarity=0.448 Sum_probs=325.8
Q ss_pred ceeeeecccccCCCCcC---CCcccCCCCCHHHHHHhchHHHHHHHHcC-CCceeecccCCCCccCCCCHHHHHHHHHhh
Q 013886 28 NVIACAKHFVGDGGTER---GINEGNTISTYDDLEKIHMAPYLDCISQG-VCTIMASYSSWNGRKLHADHFLLTEVLKNK 103 (434)
Q Consensus 28 gv~a~~KHFpg~g~~~~---~~~~~~~~~~~~~l~e~~l~PF~~~i~~g-~~~vM~sy~~~~g~pa~~s~~~l~~iLR~~ 103 (434)
+|++|+||||||+.+.. +++..++.+++++|+|+||+||+++|++| +.+||||||++||+|+|.|++||++ ||+|
T Consensus 209 ~V~a~~KHF~g~~~e~~~~~~r~~~~~~v~~~~L~e~yl~PF~~ai~~g~~~~VM~sYn~vnG~Pa~~s~~lL~~-LR~e 287 (779)
T PLN03080 209 MLSACCKHYTAYDLEKWGNFSRYTFNAVVTEQDMEDTYQPPFKSCIQEGKASCLMCSYNQVNGVPACARKDLLQK-ARDE 287 (779)
T ss_pred eEEEECCeeeCCCccccCCccccCccCccCHHHHHhhhhHHHHHHHHhcCCeEEEeCCcCcCCccccCCHHHHHH-HHHH
Confidence 39999999999998753 23445667899999999999999999987 7899999999999999999999986 9999
Q ss_pred cCCCeEEEcChhhhhhhcCCCC--CChHHHHHHHHHcCCCeecCCCChHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q 013886 104 LGFKGFVISDWEGLDRLSQPHG--SNYRYCISTAVNAGIDMVMVPHRFDQFFEDLTYLVESGKVPMSRIDDAVERILRVK 181 (434)
Q Consensus 104 ~gf~G~viSD~~~m~~~~~~~~--~~~~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av~~g~~~~~~id~a~~ril~~k 181 (434)
|||+|+|||||++|..+...++ .+.++++++||+||+||+|.. .+.+.|.+||++|++++++||+|++|||++|
T Consensus 288 wGF~G~VvSD~~a~~~~~~~~~~~~~~~ea~~~Al~AG~Dl~~~~----~~~~~l~~av~~G~i~e~~ID~av~RiL~~k 363 (779)
T PLN03080 288 WGFQGYITSDCDAVATIFEYQTYTKSPEDAVADVLKAGMDINCGS----YMLRHTQSAIEKGKVQEEDIDRALFNLFSVQ 363 (779)
T ss_pred hCcCCeEecchHHHHHhhhcccccCCHHHHHHHHHHcCCCcccCc----hhHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999998876543 256788999999999999753 2456899999999999999999999999999
Q ss_pred HHcCCCCCCCCCcc----hhhhhcchhHHHHHHHHHhccEEEcccCCCCCCCccCCCCC-CCeEEEEeeccccccccCCC
Q 013886 182 FVAGLFEYPFSDKS----LLNIVGCKLHRELAREAVRKSLVLLKNGKKPEKPFLPLDRN-AKRILVVGTHADDLGYQCGG 256 (434)
Q Consensus 182 ~~~gl~~~p~~~~~----~~~~~~~~~~~~la~~~a~~sivLLKN~~~~~~~~LPL~~~-~~kIavig~~a~~~~~~~g~ 256 (434)
+++|+||+|+.... ....+++++|+++|+++|++||||||| ++++|||++. .+||+||||+++....+.|+
T Consensus 364 ~rlGlfd~~~~~~~~~~~~~~~v~~~~h~~lA~eaA~~siVLLKN----~~~~LPL~~~~~~~IaViGp~A~~~~~~~g~ 439 (779)
T PLN03080 364 LRLGLFDGDPRNGWYGKLGPNNVCTKEHRELALEAARQGIVLLKN----DKKFLPLNKSEVSSLAIIGPMANDPYNLGGD 439 (779)
T ss_pred HHhCCCcCCCcccccccccccccCCHHHHHHHHHHHHhCEEEEec----CCCCCCCCCCCCCEEEEECCCCCCcCcCCCC
Confidence 99999997653211 125678999999999999999999999 6789999864 37999999999988766666
Q ss_pred CceeccCCCCCccccCCHHHHHHhHcCCCcEEEEccCCC-----------hhhhhcCCCceEEEEeeCCCCccccC-CCC
Q 013886 257 WTKTWFGMSGKITIGTTILEAVKEAVGDETEVIYEKYPS-----------PDTFVAGDFSFAIAAVGEEPYAETLG-DNS 324 (434)
Q Consensus 257 ~~~~~~g~~g~~~~~~t~~~~l~~~~~~~~~v~~~~~~~-----------~~~~~a~~ad~~iv~~g~~~~~~~~g-d~~ 324 (434)
|+ +.+....|++++|+++.. .+.|..+.+ .....++.+|++||++|.+...+.|+ ||.
T Consensus 440 ~~-------~~~~~~~t~~~gl~~~~~---~~~y~~g~~~~~~~~~~~~~~A~~~A~~aD~vIv~~G~~~~~e~E~~Dr~ 509 (779)
T PLN03080 440 YT-------GVPCQPTTLFKGLQAYVK---KTSFAAGCKDVSCNSDTGFGEAIAIAKRADFVVVVAGLDLSQETEDHDRV 509 (779)
T ss_pred CC-------CCCCCCCCHHHHHHHHhh---cceeccCccccccCchhhHHHHHHHhccCCEEEEEeCCCccccccCCCcc
Confidence 54 223455799999998764 244544421 12234788999999999988777776 999
Q ss_pred CccCCcchHHHHHHHHc-C-CCeEEEEEcCCceecCccc--cCCCcEEEEccCCCch-HHHHHHHHhcCCCCCccccccc
Q 013886 325 ELIIPLNGGDVISLVAE-R-IPTLAILVSGRPLVLEPQL--LEKADALVAAWLPGSE-GSGIADVVFGDHDFTGRLPVTW 399 (434)
Q Consensus 325 ~l~l~~~q~~li~~v~~-~-~~~vvV~~~g~P~~l~~~~--~~~~~ail~a~~~g~~-~~aiadvL~G~~~PsGkLPvT~ 399 (434)
+|.||+.|.+||++|++ + +|+|||+++|+|+++ +|. .++++|||++|+|||+ |+|+||||||++||+||||+||
T Consensus 510 ~l~Lp~~Q~~LI~~va~~~~~pvIvVl~~g~Pv~l-~~~~~~~~v~AIl~~~ypGqegG~AiAdvLfG~vnPsGkLPvT~ 588 (779)
T PLN03080 510 SLLLPGKQMDLISSVASVSKKPVVLVLTGGGPVDV-SFAKQDPRIASILWIGYPGEVGGQALAEIIFGDYNPGGRLPMTW 588 (779)
T ss_pred cccCCccHHHHHHHHHhhcCCCEEEEEeCCceeec-cchhccCCCCeEEEccCCcccchhhhHHHHcCCCCCCCcCeeee
Confidence 99999999999999997 4 479999999999999 561 2379999999999999 9999999999999999999999
Q ss_pred -ccccCCcCcc-C-------------CCCCC--CcccccccCCCCCCCCC
Q 013886 400 -YRSVQRLPMN-V-------------ADNTY--DPLFPLGFGLTYKKEKS 432 (434)
Q Consensus 400 -p~~~~~~p~~-~-------------~~~~~--~~~ypFG~GLsYt~~~~ 432 (434)
|++..++|.+ + +|||| +|+||||||||||+|++
T Consensus 589 ~p~~~~~~P~~~~~~~~~~~~~~pg~~Yr~~~~~p~ypFG~GLSYTtF~y 638 (779)
T PLN03080 589 YPESFTAVPMTDMNMRADPSRGYPGRTYRFYTGDVVYGFGYGLSYTKFSY 638 (779)
T ss_pred cccccccCCccccCcccccccCCCCCCceeCCCCcceeccCCCccceeEe
Confidence 8888899875 1 38888 49999999999999974
No 3
>COG1472 BglX Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-47 Score=383.80 Aligned_cols=233 Identities=37% Similarity=0.574 Sum_probs=204.6
Q ss_pred eeccCCCCCCCCCCCcccccC--CCceeeeecccccCCCCcCCCcccCCCCCHHHHHHhchHHHHHHHHcC---CCceee
Q 013886 5 VSGLQGRPPKEHPKGYPYVAG--RNNVIACAKHFVGDGGTERGINEGNTISTYDDLEKIHMAPYLDCISQG---VCTIMA 79 (434)
Q Consensus 5 v~g~qg~~~~~~~~g~a~~~G--~~gv~a~~KHFpg~g~~~~~~~~~~~~~~~~~l~e~~l~PF~~~i~~g---~~~vM~ 79 (434)
.+.|..||..+..++.+|++| ..||++|+|||||||.++.|+|..+..++.+.|+|.|+.||+.+++++ +.++|+
T Consensus 135 ersfgeDP~lv~~l~~a~i~Glq~~gv~at~KHFpGhG~~~~dsh~~~~~v~~~~L~e~~~~~f~~~~~~~~~~~mtahv 214 (397)
T COG1472 135 ERSFGEDPELVALLAAAFIKGLQGAGVAATIKHFPGHGAVEGDSHYGLLPIDPRALRELYLPPFQPAIALGDDAAMTAHV 214 (397)
T ss_pred cccCCCCHHHHHHHHHHHHHHHhhCCceeeeccccCCCCCcCCcccccCCCChHHHHHhhccchHHHHHhccccceEEee
Confidence 345778888888899999999 899999999999999999999988777999999999999999999999 788899
Q ss_pred cccCCCCccCCCCHHHHHHHHHhhcCCCeEEEcChhhhhhhcCCCCCChHHHHHHHHHcCCCeecCCCChHHHHHHHHHH
Q 013886 80 SYSSWNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRLSQPHGSNYRYCISTAVNAGIDMVMVPHRFDQFFEDLTYL 159 (434)
Q Consensus 80 sy~~~~g~pa~~s~~~l~~iLR~~~gf~G~viSD~~~m~~~~~~~~~~~~~~~~~al~AG~D~~l~~~~~~~~~~~l~~a 159 (434)
+|+.+|+.|+|+|+++|++|||++|||+|+|||||++|.++...++. ..+.+..+++|||||+|.|++.......+..+
T Consensus 215 ~y~~id~~Pat~s~~ll~diLR~~~GF~G~ViSD~~~m~~~~~~~g~-~~d~~~~al~AG~Di~l~~~~~~~~~~~~~~~ 293 (397)
T COG1472 215 AYPKIDGTPATLSRKLLTDILRDEWGFDGVVISDDLSMKAIAAAHGS-AADRAEAALKAGVDIVLVCNELYEAYLVVLEL 293 (397)
T ss_pred eccCCCCCcccCCHHHHHHHHHhccCCCeEEEeecchhHHHHHhccC-HHHHHHHHHhcCCCEEecCCchhHHHHHHHHh
Confidence 99999999999999999999999999999999999999987765443 35566779999999999998754433333333
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCCCCcchhhhhcchhHHHHHHHHHhccEEEcccCCCCCCCccCCCCCCCe
Q 013886 160 VESGKVPMSRIDDAVERILRVKFVAGLFEYPFSDKSLLNIVGCKLHRELAREAVRKSLVLLKNGKKPEKPFLPLDRNAKR 239 (434)
Q Consensus 160 v~~g~~~~~~id~a~~ril~~k~~~gl~~~p~~~~~~~~~~~~~~~~~la~~~a~~sivLLKN~~~~~~~~LPL~~~~~k 239 (434)
.+ +++++++++++|||++|+++|+|++|+.. +|++++++++++|+||||| +..+||+++..++
T Consensus 294 --~~-~~~~~i~~~v~Ril~~k~~~~~f~~~~~~----------~~~~~a~~~~~~~~~ll~n----~~~~~p~~~~~~~ 356 (397)
T COG1472 294 --VG-LSEARLDDAVRRILRVKFKLGLFENPYSS----------EHRALAREAARESIVLLKN----DGGLLPLKKSAKR 356 (397)
T ss_pred --cC-CcHHHHHHHHHHHHHHHHHhccccCCCch----------hhHHHHHHHHHHHHHHHHh----ccCCCccccccCc
Confidence 33 99999999999999999999999999865 8999999999999999999 6789999955569
Q ss_pred EEEEeeccccccccCCCCc
Q 013886 240 ILVVGTHADDLGYQCGGWT 258 (434)
Q Consensus 240 Iavig~~a~~~~~~~g~~~ 258 (434)
|+++||+++.. . |+|+
T Consensus 357 i~v~g~~~~~~-~--g~~~ 372 (397)
T COG1472 357 IAVIGPYADDG-D--GGWS 372 (397)
T ss_pred eEEEccccccC-C--CCee
Confidence 99999999987 4 7776
No 4
>PF00933 Glyco_hydro_3: Glycosyl hydrolase family 3 N terminal domain; InterPro: IPR001764 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase (3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often N-terminal to the glycoside hydrolase family 3, C-terminal domain IPR002772 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1Y65_A 2OXN_A 3GS6_A 1TR9_A 3GSM_A 3UT0_B 3RRX_A 3USZ_A 2X42_A 2X40_A ....
Probab=100.00 E-value=3.3e-41 Score=329.45 Aligned_cols=175 Identities=31% Similarity=0.451 Sum_probs=148.5
Q ss_pred eeeccCCCCCCCCCCCcccccC--CCceeeeecccccCCCCcCCCcccCCCCCHHHHHHhchHHHHHHH-HcCCCceeec
Q 013886 4 IVSGLQGRPPKEHPKGYPYVAG--RNNVIACAKHFVGDGGTERGINEGNTISTYDDLEKIHMAPYLDCI-SQGVCTIMAS 80 (434)
Q Consensus 4 ~v~g~qg~~~~~~~~g~a~~~G--~~gv~a~~KHFpg~g~~~~~~~~~~~~~~~~~l~e~~l~PF~~~i-~~g~~~vM~s 80 (434)
..|.|..|+..+++++.+|++| +.||++|+||||||+..+.+++.....++.++|++.||+||+.+| ++|+.+||+|
T Consensus 122 ~~rsfgeDp~~v~~~~~a~v~G~q~~gv~~~~KHFpG~~~~d~~~~~~~~~~~~~~l~~~~l~pF~~~i~~ag~~~VM~s 201 (299)
T PF00933_consen 122 GERSFGEDPDLVAEMARAFVRGLQGAGVAATAKHFPGHGAQDSHRDLPSVDVSERELREIDLPPFRAAIKDAGADAVMTS 201 (299)
T ss_dssp GGGSS-SSHHHHHHHHHHHHHHHHCTTSEEEEEEETTGGCSCTTTTTEEEE--HHHHHHTTSHHHHHHHHHTT-SEEEE-
T ss_pred cccccchhHHHHHHHHHHHhcccccccccccccccccccccccccccceecCCcccccchhcccchhcccccccceeeee
Confidence 3577888888888899999999 889999999999996555444334445799999999999999999 7889999999
Q ss_pred ccCCCCccCCCCHHHHHHHHHhhcCCCeEEEcChhhhhhhcCCCCCChHHHHHHHHHcCCCeecCCCChHHHHHHHHHHH
Q 013886 81 YSSWNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRLSQPHGSNYRYCISTAVNAGIDMVMVPHRFDQFFEDLTYLV 160 (434)
Q Consensus 81 y~~~~g~pa~~s~~~l~~iLR~~~gf~G~viSD~~~m~~~~~~~~~~~~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av 160 (434)
|+.+|+.|+|+|+++|+++||++|||+|+|||||+.|.++...++ ..+++++||+||+||+|+|.+....++.|.++|
T Consensus 202 y~~id~~pas~s~~~l~~lLR~~lgf~G~viSD~~~m~~~~~~~~--~~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av 279 (299)
T PF00933_consen 202 YPAIDGTPASLSPKILTDLLRNELGFDGVVISDDLEMGALSSNYS--IEEAAVRALNAGCDMLLVCNDPDDDIDALVEAV 279 (299)
T ss_dssp STCCTTEEGGG-HHHHCCCCCCCS---SEEEESTTTSHHHHCCTT--HHHHHHHHHHHT-SBEESSSSHHHHHHHHHHHH
T ss_pred ccccCCccchhhhccchhhCcCcccCCCeEecccchHHHHHhccc--cchHHHHHHhCccCeeCCCCchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987655 578899999999999999998877789999999
Q ss_pred HCCCCCHHHHHHHHHHHHHH
Q 013886 161 ESGKVPMSRIDDAVERILRV 180 (434)
Q Consensus 161 ~~g~~~~~~id~a~~ril~~ 180 (434)
++|.++++|||+|++|||++
T Consensus 280 ~~g~i~~~~ld~av~RIl~~ 299 (299)
T PF00933_consen 280 ESGRISEERLDEAVRRILRL 299 (299)
T ss_dssp HTTSSGHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999985
No 5
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase(3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often C-terminal to the glycoside hydrolase family 3, N-terminal domain IPR001764 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3LK6_D 3NVD_B 3BMX_B 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A 1J8V_A 1IEX_A ....
Probab=100.00 E-value=2.9e-38 Score=297.27 Aligned_cols=201 Identities=37% Similarity=0.607 Sum_probs=144.6
Q ss_pred EEEcccCCCCCCCccCCCCCCCeEEEEeeccccccccCCCCceeccCCCCCccccCCHHHHHHhHcCCCcEEEEccCC--
Q 013886 217 LVLLKNGKKPEKPFLPLDRNAKRILVVGTHADDLGYQCGGWTKTWFGMSGKITIGTTILEAVKEAVGDETEVIYEKYP-- 294 (434)
Q Consensus 217 ivLLKN~~~~~~~~LPL~~~~~kIavig~~a~~~~~~~g~~~~~~~g~~g~~~~~~t~~~~l~~~~~~~~~v~~~~~~-- 294 (434)
|||||| ++++|||+++.+||+|+|+.+.....+++||+.. ......++++++++++............
T Consensus 1 ivLLKN----~~~~LPL~~~~~~v~viG~~~~~~~~~g~g~~~~------~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~ 70 (227)
T PF01915_consen 1 IVLLKN----EGNLLPLKPDKKKVAVIGPNADNPVAQGGGSGNV------NPGYGVTPLDALKQRFGNAGVVVPEGGDAV 70 (227)
T ss_dssp -EEEEE----GCG--SB-TTSTEEEEESTTTTSHHHCHBSTTSS------TCSTHBHHHHHHHHHHHTTSEEEECCCCCC
T ss_pred CEEEEe----CCCCCCCCCCCCEEEEEcCccccccccCCccccc------CccccccHHhhhccccCCCceEEeeecccc
Confidence 799999 7789999986449999999998866666655432 2344679999999987655443332111
Q ss_pred -C-----hhhhhcCCCceEEEEeeCCCCccc-------cCCCCCccCCcchHHHHHHHHc-CCCeEEEEEcCCceecCcc
Q 013886 295 -S-----PDTFVAGDFSFAIAAVGEEPYAET-------LGDNSELIIPLNGGDVISLVAE-RIPTLAILVSGRPLVLEPQ 360 (434)
Q Consensus 295 -~-----~~~~~a~~ad~~iv~~g~~~~~~~-------~gd~~~l~l~~~q~~li~~v~~-~~~~vvV~~~g~P~~l~~~ 360 (434)
+ .....++++|++||+++. +..|. +.|+.++.+|..|.++|+++++ ++|+|||+.+++||++.+|
T Consensus 71 ~~~~~~~~~~~~~~~aD~vIv~~~~-~~~e~~~~~~~~~~~~~~~~l~~~q~~li~~v~~~~~~~Ivvv~~~~P~~l~~~ 149 (227)
T PF01915_consen 71 DDDEGIDEAVAAAKEADVVIVFVGR-PSGEGNDNNTEGESDRSDLALPANQQELIKAVAAAGKKVIVVVNSGNPYDLDPW 149 (227)
T ss_dssp CCCSCHHHHHHHHHCSSEEEEEEET-TSBCCCSS-EETTGSCSSTBCCCHHHHHHHHHHHHHSCEEEEEE-SSGGCGHCC
T ss_pred ccccchHHHHHHhhcCCEEEEeccc-cccccccccccccCCcccccchhhHHHHHHHHHHhcCCeEEEEecCCccccHHH
Confidence 1 122335689999999993 22222 2588899999999999999988 6899999999999999888
Q ss_pred ccCCCcEEEEccCCCch-HHHHHHHHhcCCCCCcccccccccccCCcCccCC----CCCC-----CcccccccCCCCCC
Q 013886 361 LLEKADALVAAWLPGSE-GSGIADVVFGDHDFTGRLPVTWYRSVQRLPMNVA----DNTY-----DPLFPLGFGLTYKK 429 (434)
Q Consensus 361 ~~~~~~ail~a~~~g~~-~~aiadvL~G~~~PsGkLPvT~p~~~~~~p~~~~----~~~~-----~~~ypFG~GLsYt~ 429 (434)
.++++|||++|++|++ ++|+||||||++||+||||+|||++++++|.+.. +++| +++||||||||||+
T Consensus 150 -~~~~~Ail~~~~~g~~~~~A~advL~G~~~PsGkLPvT~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~fG~GLsyt~ 227 (227)
T PF01915_consen 150 -EDNVDAILAAYYPGQEGGEAIADVLFGDVNPSGKLPVTIPKSMEDIPAYYNYGMYGRTYDYDSGPPLYPFGYGLSYTY 227 (227)
T ss_dssp -HHC-SEEEEEES-GSBHHHHHHHHHTTSS---B--SS-BESSGGGTTTTTTTS-THCCHHHHTTSESB-TT--B-TT-
T ss_pred -HhhhceEeeccccchHHHHHHHHHHcCCCCCCCCcceeccCChhhCCCcccccccCcccccCCCCccCcCCCCCEeeC
Confidence 7799999999999999 9999999999999999999999999999998654 2333 69999999999985
No 6
>PRK05337 beta-hexosaminidase; Provisional
Probab=100.00 E-value=1.4e-35 Score=292.03 Aligned_cols=169 Identities=22% Similarity=0.358 Sum_probs=145.6
Q ss_pred eeccCCCCCCCCCCCcccccC--CCceeeeecccccCCCCcCCCcccCCCC--CHHHHHHhchHHHHHHHHcCCCceeec
Q 013886 5 VSGLQGRPPKEHPKGYPYVAG--RNNVIACAKHFVGDGGTERGINEGNTIS--TYDDLEKIHMAPYLDCISQGVCTIMAS 80 (434)
Q Consensus 5 v~g~qg~~~~~~~~g~a~~~G--~~gv~a~~KHFpg~g~~~~~~~~~~~~~--~~~~l~e~~l~PF~~~i~~g~~~vM~s 80 (434)
.|.|..||..+.+++.+|++| +.||++|+|||||||.+..|+|...+.. +.++|++.||+||+.+|++|+.+||||
T Consensus 134 ~RsfgeDp~lv~~~a~a~i~Glq~~gv~~~~KHFpG~G~~~~dsh~~~~~~~~~~~el~~~~l~PF~~ai~~g~~~vM~a 213 (337)
T PRK05337 134 DRAFHRDPQVVAALASAFIDGMHAAGMAATGKHFPGHGAVEADSHVETPVDERPLEEIRAEDMAPFRALIAAGLDAVMPA 213 (337)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHCCCEEEecccCCCCCCcCCCCCCCCCCCCCHHHHHhhhHHHHHHHHhcCCCEEEeC
Confidence 356777888888999999999 7899999999999999998888766543 668999999999999999999999999
Q ss_pred ---ccCCCCccCCCCHHHHHHHHHhhcCCCeEEEcChhhhhhhcCCCCCChHHHHHHHHHcCCCeecCCCChHHHHHHHH
Q 013886 81 ---YSSWNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRLSQPHGSNYRYCISTAVNAGIDMVMVPHRFDQFFEDLT 157 (434)
Q Consensus 81 ---y~~~~g~pa~~s~~~l~~iLR~~~gf~G~viSD~~~m~~~~~~~~~~~~~~~~~al~AG~D~~l~~~~~~~~~~~l~ 157 (434)
|+.+|+.|+|+|+++|++|||+||||+|+|||||+.|.++... .+..+++++|++|||||+|+|+++. ....+.
T Consensus 214 Hv~y~~id~~Pa~~S~~~l~~lLR~elGF~G~ViSD~l~m~a~~~~--~~~~~~~~~al~AG~Dl~l~~~~~~-~~~~~~ 290 (337)
T PRK05337 214 HVIYPQVDPRPAGFSRYWLQDILRQELGFDGVIFSDDLSMEGAAVA--GDYAERAQAALDAGCDMVLVCNNRD-GAVSVL 290 (337)
T ss_pred ceeccCCCCCCCcCCHHHHHHHHHHhcCCCEEEEecchhhhhhhhc--CCHHHHHHHHHHcCCCEEeeCCCHH-HHHHHH
Confidence 8899999999999999999999999999999999999876432 3457789999999999999998864 456677
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHc
Q 013886 158 YLVESGKVPMSRIDDAVERILRVKFVA 184 (434)
Q Consensus 158 ~av~~g~~~~~~id~a~~ril~~k~~~ 184 (434)
+++.. +.+.+|+++++.+.
T Consensus 291 ~~l~~--------~~~~~~~~~~~~~~ 309 (337)
T PRK05337 291 DNLSP--------PISAERLTRLYGRG 309 (337)
T ss_pred HHHHh--------hccHHHHHHHhccc
Confidence 77754 67788888887653
No 7
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=81.47 E-value=4.4 Score=37.94 Aligned_cols=90 Identities=17% Similarity=0.113 Sum_probs=57.4
Q ss_pred chHHHHHHHHcCCCceeecccCCCCccCCCCHHHHHHHHHhhcCCCeEEEcChhhhhhhcCCCCCChHHHHHHHHHcCCC
Q 013886 62 HMAPYLDCISQGVCTIMASYSSWNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRLSQPHGSNYRYCISTAVNAGID 141 (434)
Q Consensus 62 ~l~PF~~~i~~g~~~vM~sy~~~~g~pa~~s~~~l~~iLR~~~gf~G~viSD~~~m~~~~~~~~~~~~~~~~~al~AG~D 141 (434)
++.-.+++.+.|+.+||+--..|..----.|++.| .++|++. +=-||-|.+- +. .-.+..|++-|+|
T Consensus 133 D~v~akrL~d~GcaavMPlgsPIGSg~Gi~n~~~l-~~i~~~~--~vPvIvDAGi-G~---------pSdaa~AMElG~d 199 (247)
T PF05690_consen 133 DPVLAKRLEDAGCAAVMPLGSPIGSGRGIQNPYNL-RIIIERA--DVPVIVDAGI-GT---------PSDAAQAMELGAD 199 (247)
T ss_dssp -HHHHHHHHHTT-SEBEEBSSSTTT---SSTHHHH-HHHHHHG--SSSBEEES----S---------HHHHHHHHHTT-S
T ss_pred CHHHHHHHHHCCCCEEEecccccccCcCCCCHHHH-HHHHHhc--CCcEEEeCCC-CC---------HHHHHHHHHcCCc
Confidence 35567888899999999876666433344577777 4677777 4456667642 11 2235789999999
Q ss_pred eecCC------CChHHHHHHHHHHHHCCC
Q 013886 142 MVMVP------HRFDQFFEDLTYLVESGK 164 (434)
Q Consensus 142 ~~l~~------~~~~~~~~~l~~av~~g~ 164 (434)
-+|.. .++..+.++...||+.|+
T Consensus 200 aVLvNTAiA~A~dPv~MA~Af~~AV~AGR 228 (247)
T PF05690_consen 200 AVLVNTAIAKAKDPVAMARAFKLAVEAGR 228 (247)
T ss_dssp EEEESHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred eeehhhHHhccCCHHHHHHHHHHHHHHHH
Confidence 99863 456667778888887663
No 8
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=76.01 E-value=13 Score=35.22 Aligned_cols=90 Identities=18% Similarity=0.097 Sum_probs=60.5
Q ss_pred chHHHHHHHHcCCCceeecccCCCCccCCCCHHHHHHHHHhhcCCCeEEEcChhhhhhhcCCCCCChHHHHHHHHHcCCC
Q 013886 62 HMAPYLDCISQGVCTIMASYSSWNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRLSQPHGSNYRYCISTAVNAGID 141 (434)
Q Consensus 62 ~l~PF~~~i~~g~~~vM~sy~~~~g~pa~~s~~~l~~iLR~~~gf~G~viSD~~~m~~~~~~~~~~~~~~~~~al~AG~D 141 (434)
++.-.+++.+.|+.+||+--..|..----.|++.|. ++|++- +=.|+-|++- .+ ...+.+|++-|+|
T Consensus 147 D~v~a~rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l~-~i~e~~--~vpVivdAGI----gt------~sDa~~AmElGaD 213 (267)
T CHL00162 147 DPMLAKHLEDIGCATVMPLGSPIGSGQGLQNLLNLQ-IIIENA--KIPVIIDAGI----GT------PSEASQAMELGAS 213 (267)
T ss_pred CHHHHHHHHHcCCeEEeeccCcccCCCCCCCHHHHH-HHHHcC--CCcEEEeCCc----CC------HHHHHHHHHcCCC
Confidence 455668888899999998665553222334777774 667664 4557777442 11 3457899999999
Q ss_pred eecCC------CChHHHHHHHHHHHHCCC
Q 013886 142 MVMVP------HRFDQFFEDLTYLVESGK 164 (434)
Q Consensus 142 ~~l~~------~~~~~~~~~l~~av~~g~ 164 (434)
-.+.. .++..+.+++..||+.|+
T Consensus 214 gVL~nSaIakA~dP~~mA~a~~~AV~AGR 242 (267)
T CHL00162 214 GVLLNTAVAQAKNPEQMAKAMKLAVQAGR 242 (267)
T ss_pred EEeecceeecCCCHHHHHHHHHHHHHHHH
Confidence 98864 356667777777777663
No 9
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=62.12 E-value=28 Score=32.58 Aligned_cols=86 Identities=17% Similarity=0.142 Sum_probs=56.8
Q ss_pred HHHHHHcCCCceeecccCCCCccCCCCHHHHHHHHHhhcCCCeEEEcChhhhhhhcCCCCCChHHHHHHHHHcCCCeecC
Q 013886 66 YLDCISQGVCTIMASYSSWNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRLSQPHGSNYRYCISTAVNAGIDMVMV 145 (434)
Q Consensus 66 F~~~i~~g~~~vM~sy~~~~g~pa~~s~~~l~~iLR~~~gf~G~viSD~~~m~~~~~~~~~~~~~~~~~al~AG~D~~l~ 145 (434)
-+++.+.|+.+||+--..|..----.|++-| .+++++. +=-||-|++- | . .-.+..+++-|+|-+|.
T Consensus 144 arrLee~GcaavMPl~aPIGSg~G~~n~~~l-~iiie~a--~VPviVDAGi--------G-~-pSdAa~aMElG~DaVL~ 210 (262)
T COG2022 144 ARRLEEAGCAAVMPLGAPIGSGLGLQNPYNL-EIIIEEA--DVPVIVDAGI--------G-T-PSDAAQAMELGADAVLL 210 (262)
T ss_pred HHHHHhcCceEeccccccccCCcCcCCHHHH-HHHHHhC--CCCEEEeCCC--------C-C-hhHHHHHHhcccceeeh
Confidence 3566678999999865555322233477766 5788875 7678888653 1 0 11256899999999986
Q ss_pred C------CChHHHHHHHHHHHHCCC
Q 013886 146 P------HRFDQFFEDLTYLVESGK 164 (434)
Q Consensus 146 ~------~~~~~~~~~l~~av~~g~ 164 (434)
. .++..+.++..-||+.|+
T Consensus 211 NTAiA~A~DPv~MA~Af~~Av~AGr 235 (262)
T COG2022 211 NTAIARAKDPVAMARAFALAVEAGR 235 (262)
T ss_pred hhHhhccCChHHHHHHHHHHHHHhH
Confidence 4 345556677777777664
No 10
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=61.25 E-value=38 Score=32.07 Aligned_cols=84 Identities=18% Similarity=0.150 Sum_probs=52.6
Q ss_pred HHHHHHcCCCceee--cccCCCCccCCCCHHHHHHHHHhhcCCCeEEEcChhhhhhhcCCCCCChHHHHHHHHHcCCCee
Q 013886 66 YLDCISQGVCTIMA--SYSSWNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRLSQPHGSNYRYCISTAVNAGIDMV 143 (434)
Q Consensus 66 F~~~i~~g~~~vM~--sy~~~~g~pa~~s~~~l~~iLR~~~gf~G~viSD~~~m~~~~~~~~~~~~~~~~~al~AG~D~~ 143 (434)
-+++.+.|+..||+ +-.. .|. .-.++.+|. .+|++ .+-.||-|.+- . ..+.+.++++.|+|-.
T Consensus 137 ar~l~~~G~~~vmPlg~pIG-sg~-Gi~~~~~I~-~I~e~--~~vpVI~egGI----~------tpeda~~AmelGAdgV 201 (248)
T cd04728 137 AKRLEDAGCAAVMPLGSPIG-SGQ-GLLNPYNLR-IIIER--ADVPVIVDAGI----G------TPSDAAQAMELGADAV 201 (248)
T ss_pred HHHHHHcCCCEeCCCCcCCC-CCC-CCCCHHHHH-HHHHh--CCCcEEEeCCC----C------CHHHHHHHHHcCCCEE
Confidence 46666789999998 4333 222 223577786 55666 35567766332 1 1456789999999999
Q ss_pred cCCC------ChHHHHHHHHHHHHCCC
Q 013886 144 MVPH------RFDQFFEDLTYLVESGK 164 (434)
Q Consensus 144 l~~~------~~~~~~~~l~~av~~g~ 164 (434)
++.. ++....+++..+++.|+
T Consensus 202 lV~SAIt~a~dP~~ma~af~~Av~aGr 228 (248)
T cd04728 202 LLNTAIAKAKDPVAMARAFKLAVEAGR 228 (248)
T ss_pred EEChHhcCCCCHHHHHHHHHHHHHHHH
Confidence 8653 34445566666666553
No 11
>cd00938 HisRS_RNA HisRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of HisRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=60.86 E-value=21 Score=24.34 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=25.3
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHcC
Q 013886 156 LTYLVESGKVPMSRIDDAVERILRVKFVAG 185 (434)
Q Consensus 156 l~~av~~g~~~~~~id~a~~ril~~k~~~g 185 (434)
.+..++...-+.+.|+..|..+|.+|..+|
T Consensus 13 ~VRkLKa~KA~k~~i~~eV~~LL~LKaqlg 42 (45)
T cd00938 13 LVRKLKAEKASKEQIAEEVAKLLELKAQLG 42 (45)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHhC
Confidence 444566777889999999999999999987
No 12
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=58.93 E-value=29 Score=34.21 Aligned_cols=86 Identities=14% Similarity=0.135 Sum_probs=56.4
Q ss_pred HHHHHHHcCCCceeecccCC-CCccCCCCHHHHHHHHHhhcCCCeEEEcChhhhhhhcCCCCCChHHHHHHHHHcCCCee
Q 013886 65 PYLDCISQGVCTIMASYSSW-NGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRLSQPHGSNYRYCISTAVNAGIDMV 143 (434)
Q Consensus 65 PF~~~i~~g~~~vM~sy~~~-~g~pa~~s~~~l~~iLR~~~gf~G~viSD~~~m~~~~~~~~~~~~~~~~~al~AG~D~~ 143 (434)
-.+++.+.|+.+||+--..| .|...+ ++..|+.+.+. .+-.|+-|++- . ....+.+|++-|+|-.
T Consensus 210 ~a~~l~~~g~~avmPl~~pIGsg~gv~-~p~~i~~~~e~---~~vpVivdAGI----g------~~sda~~AmelGadgV 275 (326)
T PRK11840 210 AAKRLEDAGAVAVMPLGAPIGSGLGIQ-NPYTIRLIVEG---ATVPVLVDAGV----G------TASDAAVAMELGCDGV 275 (326)
T ss_pred HHHHHHhcCCEEEeeccccccCCCCCC-CHHHHHHHHHc---CCCcEEEeCCC----C------CHHHHHHHHHcCCCEE
Confidence 34566667888888733223 444544 88888766554 56667777553 1 1345789999999999
Q ss_pred cCC------CChHHHHHHHHHHHHCCC
Q 013886 144 MVP------HRFDQFFEDLTYLVESGK 164 (434)
Q Consensus 144 l~~------~~~~~~~~~l~~av~~g~ 164 (434)
+.. .++..+.++...||+.|+
T Consensus 276 L~nSaIa~a~dPv~Ma~A~~~av~aGr 302 (326)
T PRK11840 276 LMNTAIAEAKNPVLMARAMKLAVEAGR 302 (326)
T ss_pred EEcceeccCCCHHHHHHHHHHHHHHHH
Confidence 864 355566777777777663
No 13
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=57.37 E-value=7.7 Score=24.04 Aligned_cols=17 Identities=29% Similarity=0.552 Sum_probs=13.0
Q ss_pred HHHHHHHcCCCceeecc
Q 013886 65 PYLDCISQGVCTIMASY 81 (434)
Q Consensus 65 PF~~~i~~g~~~vM~sy 81 (434)
-++.++++|+++|||-|
T Consensus 12 ~~~~~l~~GVDgI~Td~ 28 (30)
T PF13653_consen 12 SWRELLDLGVDGIMTDY 28 (30)
T ss_dssp HHHHHHHHT-SEEEES-
T ss_pred HHHHHHHcCCCEeeCCC
Confidence 46889999999999966
No 14
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=54.04 E-value=37 Score=21.03 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=23.7
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHH
Q 013886 152 FFEDLTYLVESGKVPMSRIDDAVERIL 178 (434)
Q Consensus 152 ~~~~l~~av~~g~~~~~~id~a~~ril 178 (434)
-.+.|.+...+|.||++..++.-++||
T Consensus 4 ~L~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 4 RLEKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 457788999999999999999988886
No 15
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=51.69 E-value=36 Score=35.72 Aligned_cols=46 Identities=20% Similarity=0.217 Sum_probs=31.2
Q ss_pred HHhhcCCCeEEEcChhhhhhhcCC-CCCChHHHHHHHHHcCCCeecC
Q 013886 100 LKNKLGFKGFVISDWEGLDRLSQP-HGSNYRYCISTAVNAGIDMVMV 145 (434)
Q Consensus 100 LR~~~gf~G~viSD~~~m~~~~~~-~~~~~~~~~~~al~AG~D~~l~ 145 (434)
|++-+||+|.|+||.++.+-++-. ...+.++.+.---.-|.|+.|.
T Consensus 75 lh~f~~w~g~ilTDSGgfQv~s~g~~~ltpe~~i~~Q~~iGsDI~~~ 121 (487)
T PRK13533 75 LHKLLGFDGPIMTDSGSYQLLVYGDVEVTNEEILEFQRKIGSDIGVP 121 (487)
T ss_pred HHHHhCCCCCeEeccCCcEEEEcCCccCCHHHHHHHHHHhCCCEEeE
Confidence 667799999999999976544321 2234444444445669999984
No 16
>PRK01008 queuine tRNA-ribosyltransferase; Provisional
Probab=46.45 E-value=32 Score=34.80 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=14.6
Q ss_pred HHhhcCCCeEEEcChhhh
Q 013886 100 LKNKLGFKGFVISDWEGL 117 (434)
Q Consensus 100 LR~~~gf~G~viSD~~~m 117 (434)
|.+-+||+|.|+||.++.
T Consensus 76 lH~fm~w~gpilTDSGgf 93 (372)
T PRK01008 76 LHQFIGRNAPIITDSGGF 93 (372)
T ss_pred HHHHhCCCCcccccCcce
Confidence 456789999999997754
No 17
>PRK00208 thiG thiazole synthase; Reviewed
Probab=45.87 E-value=1.2e+02 Score=28.89 Aligned_cols=84 Identities=17% Similarity=0.152 Sum_probs=51.3
Q ss_pred HHHHHHHcCCCceee--cccCCCCccCCCCHHHHHHHHHhhcCCCeEEEcChhhhhhhcCCCCCChHHHHHHHHHcCCCe
Q 013886 65 PYLDCISQGVCTIMA--SYSSWNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRLSQPHGSNYRYCISTAVNAGIDM 142 (434)
Q Consensus 65 PF~~~i~~g~~~vM~--sy~~~~g~pa~~s~~~l~~iLR~~~gf~G~viSD~~~m~~~~~~~~~~~~~~~~~al~AG~D~ 142 (434)
--+++.+.|+..||+ +-.. .|.. -.++.+|. .++++. +--||-|.+ +. ..+.+.++++.|+|-
T Consensus 136 ~ak~l~~~G~~~vmPlg~pIG-sg~g-i~~~~~i~-~i~e~~--~vpVIveaG----I~------tpeda~~AmelGAdg 200 (250)
T PRK00208 136 LAKRLEEAGCAAVMPLGAPIG-SGLG-LLNPYNLR-IIIEQA--DVPVIVDAG----IG------TPSDAAQAMELGADA 200 (250)
T ss_pred HHHHHHHcCCCEeCCCCcCCC-CCCC-CCCHHHHH-HHHHhc--CCeEEEeCC----CC------CHHHHHHHHHcCCCE
Confidence 346666779999998 4433 2222 22466665 556553 445776633 22 245678999999999
Q ss_pred ecCCC------ChHHHHHHHHHHHHCC
Q 013886 143 VMVPH------RFDQFFEDLTYLVESG 163 (434)
Q Consensus 143 ~l~~~------~~~~~~~~l~~av~~g 163 (434)
.++.. ++....+++..+++.|
T Consensus 201 VlV~SAItka~dP~~ma~af~~Av~aG 227 (250)
T PRK00208 201 VLLNTAIAVAGDPVAMARAFKLAVEAG 227 (250)
T ss_pred EEEChHhhCCCCHHHHHHHHHHHHHHH
Confidence 98653 3444556666666655
No 18
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=43.93 E-value=1e+02 Score=27.32 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=27.9
Q ss_pred hcCCCceEEEEeeCCCCccccCCCCCccCCcchHHHHHHHHcCCCeEEEEEcCCceec
Q 013886 300 VAGDFSFAIAAVGEEPYAETLGDNSELIIPLNGGDVISLVAERIPTLAILVSGRPLVL 357 (434)
Q Consensus 300 ~a~~ad~~iv~~g~~~~~~~~gd~~~l~l~~~q~~li~~v~~~~~~vvV~~~g~P~~l 357 (434)
.+..+|+++|.+|. +.|..++.+.....+..+++..|..++.
T Consensus 96 ~~~~pdiv~vglG~----------------PkQE~~~~~~~~~l~~~v~~~vG~~~d~ 137 (171)
T cd06533 96 NASGADILFVGLGA----------------PKQELWIARHKDRLPVPVAIGVGGSFDF 137 (171)
T ss_pred HHcCCCEEEEECCC----------------CHHHHHHHHHHHHCCCCEEEEeceeeEe
Confidence 35678888888874 3677888888764444455555766655
No 19
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=43.09 E-value=88 Score=29.12 Aligned_cols=79 Identities=20% Similarity=0.313 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCCCeecCCCChHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHcCCCCCCCCCcc--hhhhhcchhH
Q 013886 129 RYCISTAVNAGIDMVMVPHRFDQFFEDLTYLVESGKVPM-SRIDDAVERILRVKFVAGLFEYPFSDKS--LLNIVGCKLH 205 (434)
Q Consensus 129 ~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av~~g~~~~-~~id~a~~ril~~k~~~gl~~~p~~~~~--~~~~~~~~~~ 205 (434)
.+....|++||.||+.+++ |+.++ .+|+... ++|-+=.++. |. |+ |..... ..-.+.-++.
T Consensus 71 p~~f~~aV~AGAdliEIGN-fDsFY-------~qGr~f~a~eVL~Lt~~t---R~---LL--P~~~LsVTVPHiL~ld~Q 134 (242)
T PF04481_consen 71 PELFVAAVKAGADLIEIGN-FDSFY-------AQGRRFSAEEVLALTRET---RS---LL--PDITLSVTVPHILPLDQQ 134 (242)
T ss_pred HHHHHHHHHhCCCEEEecc-hHHHH-------hcCCeecHHHHHHHHHHH---HH---hC--CCCceEEecCccccHHHH
Confidence 4567899999999998764 44433 4666543 3332222222 21 22 222211 1234455677
Q ss_pred HHHHHHHHhccEEEcccC
Q 013886 206 RELAREAVRKSLVLLKNG 223 (434)
Q Consensus 206 ~~la~~~a~~sivLLKN~ 223 (434)
.+|+.++...++-+++-+
T Consensus 135 v~LA~~L~~~GaDiIQTE 152 (242)
T PF04481_consen 135 VQLAEDLVKAGADIIQTE 152 (242)
T ss_pred HHHHHHHHHhCCcEEEcC
Confidence 899999999999999993
No 20
>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=42.01 E-value=60 Score=35.37 Aligned_cols=73 Identities=15% Similarity=0.206 Sum_probs=40.9
Q ss_pred HcCCCceeec-ccCCCCccCCCCHHHHHHHHHhhcCCCeEEEcChhhhhhhcCC-CCCChHHHHHHHHHcCCCeecC
Q 013886 71 SQGVCTIMAS-YSSWNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRLSQP-HGSNYRYCISTAVNAGIDMVMV 145 (434)
Q Consensus 71 ~~g~~~vM~s-y~~~~g~pa~~s~~~l~~iLR~~~gf~G~viSD~~~m~~~~~~-~~~~~~~~~~~al~AG~D~~l~ 145 (434)
+.|+..||+. |.-+ -.|- ....-..+=|.+-+||+|.|+||.++.+-++-. +..+.++.+.---.-|.|+.|.
T Consensus 46 ~~g~~~il~NtYhl~-~~pg-~~~~~~~gGlH~f~~w~g~ilTDSGgfQv~s~g~~~~tpe~~i~~Q~~iGsDI~~~ 120 (639)
T PRK13534 46 KLGFDIVITNSYIIY-KTPE-LREKALEKGIHSLIGFDGPIMTDSGSFQLSVYGDVEVTNREIIEFQEKIGVDIGTI 120 (639)
T ss_pred HhCCCEEEehhhhhh-hCCc-hhHHHhcCChHHHhCCCCCeEecCCceeeeecCccccCHHHHHHHHHHhCCCEEEE
Confidence 4578888864 3221 1121 011001123566789999999999986544321 2234444444444569999984
No 21
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=41.25 E-value=52 Score=20.65 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=22.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCC
Q 013886 162 SGKVPMSRIDDAVERILRVKFVAGLF 187 (434)
Q Consensus 162 ~g~~~~~~id~a~~ril~~k~~~gl~ 187 (434)
.|.|+.+++-+++.|+...+.+-|-.
T Consensus 2 ~~~i~~~~~~d~a~rv~~f~~~ngRl 27 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNFYESNGRL 27 (33)
T ss_pred CceecHHHHHHHHHHHHHHHHHcCCC
Confidence 57889999999999999999888754
No 22
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=38.44 E-value=61 Score=22.90 Aligned_cols=34 Identities=9% Similarity=0.252 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 013886 150 DQFFEDLTYLVESGKVPMSRIDDAVERILRVKFV 183 (434)
Q Consensus 150 ~~~~~~l~~av~~g~~~~~~id~a~~ril~~k~~ 183 (434)
....+.|..++.+|.++.+..++-+.+++..+..
T Consensus 9 ~~~~~~L~~a~a~GrL~~~Ef~~R~~~a~~A~t~ 42 (53)
T PF08044_consen 9 ERAVDLLRAAFAEGRLSLDEFDERLDAAYAARTR 42 (53)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCcH
Confidence 3567889999999999999999999998876643
No 23
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=37.33 E-value=1.1e+02 Score=29.55 Aligned_cols=36 Identities=28% Similarity=0.394 Sum_probs=24.4
Q ss_pred HHhhcCCCeEEEcChhhhhhhcCCCCCChHHHHHHHHHcCCCeecCCC
Q 013886 100 LKNKLGFKGFVISDWEGLDRLSQPHGSNYRYCISTAVNAGIDMVMVPH 147 (434)
Q Consensus 100 LR~~~gf~G~viSD~~~m~~~~~~~~~~~~~~~~~al~AG~D~~l~~~ 147 (434)
+|++..|.=.|+.++... +.+..|+.+|.|++|..+
T Consensus 175 ~k~~~p~~~~I~VEv~tl------------eea~~A~~~GaDiI~LDn 210 (273)
T PRK05848 175 ARKNIPFTAKIEIECESL------------EEAKNAMNAGADIVMCDN 210 (273)
T ss_pred HHHhCCCCceEEEEeCCH------------HHHHHHHHcCCCEEEECC
Confidence 477777754555554432 346789999999998654
No 24
>COG2003 RadC DNA repair proteins [DNA replication, recombination, and repair]
Probab=37.24 E-value=32 Score=32.02 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=41.9
Q ss_pred HHHHHHcCCCceeecccCCCCccC-CCCHHHHHHHHHhhcCCCeEEEcChhhh
Q 013886 66 YLDCISQGVCTIMASYSSWNGRKL-HADHFLLTEVLKNKLGFKGFVISDWEGL 117 (434)
Q Consensus 66 F~~~i~~g~~~vM~sy~~~~g~pa-~~s~~~l~~iLR~~~gf~G~viSD~~~m 117 (434)
|+.|++..+.+||.+||-=.|.|. +.....+|.-|.+-.++-|+.+=|-.-+
T Consensus 158 ~k~Al~~nAaavIlaHNHPSGd~~PS~aD~~iT~rl~~a~~ll~I~vLDHiIi 210 (224)
T COG2003 158 FKEALKYNAAAVILAHNHPSGDPTPSRADILITERLKEAGKLLGIRLLDHIII 210 (224)
T ss_pred HHHHHHhcchhhheeccCCCCCCCcCHHHHHHHHHHHHHHHhcCceeeeeEEe
Confidence 778899999999999998777754 4455678899999999988888776544
No 25
>PLN00164 glucosyltransferase; Provisional
Probab=36.45 E-value=67 Score=33.70 Aligned_cols=70 Identities=17% Similarity=0.253 Sum_probs=43.7
Q ss_pred CCeEEEcChhhh---------hhhcCCCCCChHHHHHHHHHcCCCeecCCCChHHHHHH--HHHHHH-----------CC
Q 013886 106 FKGFVISDWEGL---------DRLSQPHGSNYRYCISTAVNAGIDMVMVPHRFDQFFED--LTYLVE-----------SG 163 (434)
Q Consensus 106 f~G~viSD~~~m---------~~~~~~~~~~~~~~~~~al~AG~D~~l~~~~~~~~~~~--l~~av~-----------~g 163 (434)
=+|+|+.+|.-- +.+.++-|- .++.+|+.+|+=|+++|...++.... +.+... ++
T Consensus 338 ~~g~~v~~w~PQ~~iL~h~~vg~fvtH~Gw---nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~ 414 (480)
T PLN00164 338 GRGLVWPTWAPQKEILAHAAVGGFVTHCGW---NSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDN 414 (480)
T ss_pred CCCeEEeecCCHHHHhcCcccCeEEeeccc---chHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCC
Confidence 357888887521 222232222 35789999999999988655443332 222211 13
Q ss_pred CCCHHHHHHHHHHHH
Q 013886 164 KVPMSRIDDAVERIL 178 (434)
Q Consensus 164 ~~~~~~id~a~~ril 178 (434)
.++.+.|.++++|++
T Consensus 415 ~~~~e~l~~av~~vm 429 (480)
T PLN00164 415 FVEAAELERAVRSLM 429 (480)
T ss_pred cCcHHHHHHHHHHHh
Confidence 468899999999987
No 26
>PLN03007 UDP-glucosyltransferase family protein
Probab=35.93 E-value=80 Score=33.09 Aligned_cols=69 Identities=25% Similarity=0.475 Sum_probs=43.3
Q ss_pred CeEEEcChhhhhh---------hcCCCCCChHHHHHHHHHcCCCeecCCCChHHHHHH--HHHH------H--------H
Q 013886 107 KGFVISDWEGLDR---------LSQPHGSNYRYCISTAVNAGIDMVMVPHRFDQFFED--LTYL------V--------E 161 (434)
Q Consensus 107 ~G~viSD~~~m~~---------~~~~~~~~~~~~~~~al~AG~D~~l~~~~~~~~~~~--l~~a------v--------~ 161 (434)
.|+++.+|.--.. +.++-|. .++.+|+.+|+=|+++|...++...+ +.+. + +
T Consensus 345 ~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~---nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~ 421 (482)
T PLN03007 345 KGLIIRGWAPQVLILDHQATGGFVTHCGW---NSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVK 421 (482)
T ss_pred CCEEEecCCCHHHHhccCccceeeecCcc---hHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccc
Confidence 5788888863222 2222222 36789999999999988654432221 1121 1 2
Q ss_pred CCCCCHHHHHHHHHHHH
Q 013886 162 SGKVPMSRIDDAVERIL 178 (434)
Q Consensus 162 ~g~~~~~~id~a~~ril 178 (434)
.+.++.++|.+++++++
T Consensus 422 ~~~~~~~~l~~av~~~m 438 (482)
T PLN03007 422 GDFISREKVEKAVREVI 438 (482)
T ss_pred cCcccHHHHHHHHHHHh
Confidence 34578999999999987
No 27
>PLN02764 glycosyltransferase family protein
Probab=34.80 E-value=89 Score=32.55 Aligned_cols=71 Identities=21% Similarity=0.308 Sum_probs=44.4
Q ss_pred CCeEEEcChhhh---------hhhcCCCCCChHHHHHHHHHcCCCeecCCCChHHHH--HHHHH----HHH-----CCCC
Q 013886 106 FKGFVISDWEGL---------DRLSQPHGSNYRYCISTAVNAGIDMVMVPHRFDQFF--EDLTY----LVE-----SGKV 165 (434)
Q Consensus 106 f~G~viSD~~~m---------~~~~~~~~~~~~~~~~~al~AG~D~~l~~~~~~~~~--~~l~~----av~-----~g~~ 165 (434)
=+|+|+.+|.-- +.+.++-|- .++.+|+.+|+=|+++|...++.. +.+.+ .+. .+.+
T Consensus 316 grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~---nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~ 392 (453)
T PLN02764 316 GRGVVWGGWVQQPLILSHPSVGCFVSHCGF---GSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWF 392 (453)
T ss_pred cCCcEEeCCCCHHHHhcCcccCeEEecCCc---hHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCcc
Confidence 358888888622 222232232 367899999999999886543322 22222 111 1357
Q ss_pred CHHHHHHHHHHHHH
Q 013886 166 PMSRIDDAVERILR 179 (434)
Q Consensus 166 ~~~~id~a~~ril~ 179 (434)
+.+.|.++++|++.
T Consensus 393 ~~e~i~~av~~vm~ 406 (453)
T PLN02764 393 SKESLRDAINSVMK 406 (453)
T ss_pred CHHHHHHHHHHHhc
Confidence 88999999999974
No 28
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=34.23 E-value=5.6e+02 Score=26.70 Aligned_cols=101 Identities=14% Similarity=0.234 Sum_probs=55.7
Q ss_pred HHHcCCCceeecccCCCCc-----cCCCCHHHHHHHHHhhcCCCeEEEcChhhhhhhcCCCCCChHHHHHHHHHcC-CCe
Q 013886 69 CISQGVCTIMASYSSWNGR-----KLHADHFLLTEVLKNKLGFKGFVISDWEGLDRLSQPHGSNYRYCISTAVNAG-IDM 142 (434)
Q Consensus 69 ~i~~g~~~vM~sy~~~~g~-----pa~~s~~~l~~iLR~~~gf~G~viSD~~~m~~~~~~~~~~~~~~~~~al~AG-~D~ 142 (434)
.|+.+...+|.+.+++.|+ .++.++-+++.+|+-=+... .-+..-++ + ..+|+..| .|+
T Consensus 60 ~iDe~lvl~f~aP~SFTGEDvvEi~~HGg~~v~~~iL~~~l~~G-aR~AepGE-----------F---s~RAFLNgK~DL 124 (454)
T COG0486 60 IIDEVLVLYFKAPNSFTGEDVVEIQCHGGPVVVNLILELLLKLG-ARLAEPGE-----------F---SKRAFLNGKLDL 124 (454)
T ss_pred EeeeeeEEEEeCCCCcccccEEEEEcCCCHHHHHHHHHHHHHcC-CeecCCCc-----------c---hHHHHhcCCccH
Confidence 4555566677777888886 46778888887777543322 22222211 1 23444333 233
Q ss_pred ---------ecCCCChHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHcC-CCCCC
Q 013886 143 ---------VMVPHRFDQFFEDLTYLVE--SGKVPMSRIDDAVERILRVKFVAG-LFEYP 190 (434)
Q Consensus 143 ---------~l~~~~~~~~~~~l~~av~--~g~~~~~~id~a~~ril~~k~~~g-l~~~p 190 (434)
+. +.+ ......|++ +|.+ .++|++=.++++.+...+- ..|.|
T Consensus 125 tqAEai~dLI~-A~t----e~a~r~A~~~l~G~l-s~~i~~lr~~li~~~a~vEa~IDfp 178 (454)
T COG0486 125 TQAEAIADLID-AKT----EQAARIALRQLQGAL-SQLINELREALLELLAQVEANIDFP 178 (454)
T ss_pred HHHHHHHHHHh-CCC----HHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHheEeCCCC
Confidence 21 111 123444444 6776 5568888888888887663 33444
No 29
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=32.77 E-value=97 Score=30.87 Aligned_cols=70 Identities=23% Similarity=0.208 Sum_probs=43.5
Q ss_pred HHHHHHcCCCceeec------c--cCCCCccCCCCHHHHHHHHHhhcCCCeEEEcChhhhhhhcCCCCCChHHHHHHHHH
Q 013886 66 YLDCISQGVCTIMAS------Y--SSWNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRLSQPHGSNYRYCISTAVN 137 (434)
Q Consensus 66 F~~~i~~g~~~vM~s------y--~~~~g~pa~~s~~~l~~iLR~~~gf~G~viSD~~~m~~~~~~~~~~~~~~~~~al~ 137 (434)
.+.++++|+++|-++ + -.++|.+...= ..|.++-+---+++.-||.|-+-- ..-.+++||.
T Consensus 164 a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pql-tAv~~~a~aa~~~~v~VIaDGGIr----------~~gDI~KALA 232 (343)
T TIGR01305 164 VEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQL-SAVIECADAAHGLKGHIISDGGCT----------CPGDVAKAFG 232 (343)
T ss_pred HHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHH-HHHHHHHHHhccCCCeEEEcCCcC----------chhHHHHHHH
Confidence 467888999999766 2 23455542211 123333333335677799885431 1234789999
Q ss_pred cCCCeecCC
Q 013886 138 AGIDMVMVP 146 (434)
Q Consensus 138 AG~D~~l~~ 146 (434)
+|.|..|+.
T Consensus 233 ~GAd~VMlG 241 (343)
T TIGR01305 233 AGADFVMLG 241 (343)
T ss_pred cCCCEEEEC
Confidence 999999976
No 30
>COG1647 Esterase/lipase [General function prediction only]
Probab=29.69 E-value=57 Score=30.54 Aligned_cols=93 Identities=20% Similarity=0.149 Sum_probs=61.0
Q ss_pred eeeccCCCCCCCCCCCcccccCCCceeeeecccccCCCCcCCCcccCCCCCHHHHHHhchHHHHHHHHcCCCceeecccC
Q 013886 4 IVSGLQGRPPKEHPKGYPYVAGRNNVIACAKHFVGDGGTERGINEGNTISTYDDLEKIHMAPYLDCISQGVCTIMASYSS 83 (434)
Q Consensus 4 ~v~g~qg~~~~~~~~g~a~~~G~~gv~a~~KHFpg~g~~~~~~~~~~~~~~~~~l~e~~l~PF~~~i~~g~~~vM~sy~~ 83 (434)
++.||.|.+.++-.+|+.. -++|--+.+=-|||||.... +.-..++++|++.-.-.|+.+.++|-..|-+.-.+
T Consensus 20 llHGFTGt~~Dvr~Lgr~L--~e~GyTv~aP~ypGHG~~~e----~fl~t~~~DW~~~v~d~Y~~L~~~gy~eI~v~GlS 93 (243)
T COG1647 20 LLHGFTGTPRDVRMLGRYL--NENGYTVYAPRYPGHGTLPE----DFLKTTPRDWWEDVEDGYRDLKEAGYDEIAVVGLS 93 (243)
T ss_pred EEeccCCCcHHHHHHHHHH--HHCCceEecCCCCCCCCCHH----HHhcCCHHHHHHHHHHHHHHHHHcCCCeEEEEeec
Confidence 5778998876653333221 15688889999999995432 22235899999999999999998887776655444
Q ss_pred CCCccCCCCHHHHHHHHHhhcCCCeEE
Q 013886 84 WNGRKLHADHFLLTEVLKNKLGFKGFV 110 (434)
Q Consensus 84 ~~g~pa~~s~~~l~~iLR~~~gf~G~v 110 (434)
..|+ ++-.|-..+--+|+|
T Consensus 94 mGGv--------~alkla~~~p~K~iv 112 (243)
T COG1647 94 MGGV--------FALKLAYHYPPKKIV 112 (243)
T ss_pred chhH--------HHHHHHhhCCcccee
Confidence 4442 444444444444444
No 31
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=29.24 E-value=99 Score=29.86 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=14.9
Q ss_pred HHHHHHHHcCCCeecCCC
Q 013886 130 YCISTAVNAGIDMVMVPH 147 (434)
Q Consensus 130 ~~~~~al~AG~D~~l~~~ 147 (434)
+.+.+|++||.|++|..+
T Consensus 199 e~~~eAl~agaDiImLDN 216 (280)
T COG0157 199 EEAEEALEAGADIIMLDN 216 (280)
T ss_pred HHHHHHHHcCCCEEEecC
Confidence 446789999999999764
No 32
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=28.51 E-value=34 Score=31.03 Aligned_cols=56 Identities=21% Similarity=0.405 Sum_probs=39.2
Q ss_pred hHHHHHHHHcCCCeEEEEEcCCceecCccccCC-CcEEEEccCCCchHHHHHHHHhcCCC
Q 013886 332 GGDVISLVAERIPTLAILVSGRPLVLEPQLLEK-ADALVAAWLPGSEGSGIADVVFGDHD 390 (434)
Q Consensus 332 q~~li~~v~~~~~~vvV~~~g~P~~l~~~~~~~-~~ail~a~~~g~~~~aiadvL~G~~~ 390 (434)
+..|...+.. ..|=|+++..||+.++. .+. ...|-.+|-+|..|..+.|.|+-++.
T Consensus 99 ~tdl~~~l~~--~~VDvLvfNPPYVpt~~-~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~ 155 (209)
T KOG3191|consen 99 RTDLLSGLRN--ESVDVLVFNPPYVPTSD-EEIGDEGIASAWAGGKDGREVTDRLLPQVP 155 (209)
T ss_pred ehhHHhhhcc--CCccEEEECCCcCcCCc-ccchhHHHHHHHhcCcchHHHHHHHHhhhh
Confidence 3455655544 44555667899999875 332 36788899989889999998886553
No 33
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional
Probab=28.40 E-value=1e+02 Score=31.16 Aligned_cols=71 Identities=20% Similarity=0.256 Sum_probs=39.6
Q ss_pred HHhhcCCCeEEEcChhhhhhhc--C-------------C-----CCCChHHHHHHHHHcCCCeecCCCChHHHHHHHHHH
Q 013886 100 LKNKLGFKGFVISDWEGLDRLS--Q-------------P-----HGSNYRYCISTAVNAGIDMVMVPHRFDQFFEDLTYL 159 (434)
Q Consensus 100 LR~~~gf~G~viSD~~~m~~~~--~-------------~-----~~~~~~~~~~~al~AG~D~~l~~~~~~~~~~~l~~a 159 (434)
|++=+||+|.|+||.++-.-++ + + +..+.++...---.-|.|+.|.-....
T Consensus 78 Lh~f~~w~~~ilTDSGgfQ~~sl~~~~~~~~~Gv~f~s~~~G~~~~ltpe~~~~~q~~ig~DI~~~LD~~~--------- 148 (366)
T PRK00112 78 LHKFMNWDGPILTDSGGFQVFSLSDLRKITEEGVTFRSHIDGSKHFLTPEKSMEIQYDLGSDIVMAFDECP--------- 148 (366)
T ss_pred HHHHhCCCCceeeccCcceeeeccccccCCCCceEEecCCCCceEEeCHHHHHHHHHHhCCCEEEECCcCC---------
Confidence 5677899999999998643221 1 0 011222332222356999988532111
Q ss_pred HHCCCCCHHHHHHHHHHHHHHH
Q 013886 160 VESGKVPMSRIDDAVERILRVK 181 (434)
Q Consensus 160 v~~g~~~~~~id~a~~ril~~k 181 (434)
.-..+.+++.+|+.|-+++-
T Consensus 149 --~~~~~~~~~~~sv~rT~rw~ 168 (366)
T PRK00112 149 --PYPATYDYAKKSMERTLRWA 168 (366)
T ss_pred --CCCCCHHHHHHHHHHHHHHH
Confidence 01235677777777776654
No 34
>PLN03004 UDP-glycosyltransferase
Probab=28.40 E-value=1.1e+02 Score=31.94 Aligned_cols=70 Identities=27% Similarity=0.380 Sum_probs=44.0
Q ss_pred CeEEEcChhhhh---------hhcCCCCCChHHHHHHHHHcCCCeecCCCChHHHH--HHHHHH------HH---CCCCC
Q 013886 107 KGFVISDWEGLD---------RLSQPHGSNYRYCISTAVNAGIDMVMVPHRFDQFF--EDLTYL------VE---SGKVP 166 (434)
Q Consensus 107 ~G~viSD~~~m~---------~~~~~~~~~~~~~~~~al~AG~D~~l~~~~~~~~~--~~l~~a------v~---~g~~~ 166 (434)
+|+++.+|.--. ...++-|. .++.+|+.+|+=|+++|...++.. +.+.+. +. .|.++
T Consensus 334 ~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~---nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~ 410 (451)
T PLN03004 334 KGMVVKSWAPQVPVLNHKAVGGFVTHCGW---NSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGFVS 410 (451)
T ss_pred CcEEEEeeCCHHHHhCCCccceEeccCcc---hHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCccC
Confidence 789999986322 22232232 367899999999999875433221 222221 22 23578
Q ss_pred HHHHHHHHHHHHH
Q 013886 167 MSRIDDAVERILR 179 (434)
Q Consensus 167 ~~~id~a~~ril~ 179 (434)
.+.|.+++++++.
T Consensus 411 ~e~l~~av~~vm~ 423 (451)
T PLN03004 411 STEVEKRVQEIIG 423 (451)
T ss_pred HHHHHHHHHHHhc
Confidence 8999999999873
No 35
>PLN02208 glycosyltransferase family protein
Probab=25.66 E-value=1.7e+02 Score=30.43 Aligned_cols=69 Identities=19% Similarity=0.312 Sum_probs=42.7
Q ss_pred CeEEEcChh-hh--------hhhcCCCCCChHHHHHHHHHcCCCeecCCCChHHHHHH--HHHHH------HC---CCCC
Q 013886 107 KGFVISDWE-GL--------DRLSQPHGSNYRYCISTAVNAGIDMVMVPHRFDQFFED--LTYLV------ES---GKVP 166 (434)
Q Consensus 107 ~G~viSD~~-~m--------~~~~~~~~~~~~~~~~~al~AG~D~~l~~~~~~~~~~~--l~~av------~~---g~~~ 166 (434)
+|+|+.+|. +. +...++-|- .++.+|+.+|+=|+++|...++...+ +.+.. .. |.++
T Consensus 311 ~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~---nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~ 387 (442)
T PLN02208 311 RGVVWGGWVQQPLILDHPSIGCFVNHCGP---GTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWFS 387 (442)
T ss_pred CCcEeeccCCHHHHhcCCccCeEEccCCc---hHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcCc
Confidence 688888886 22 222232232 36789999999999988654433222 22211 11 3378
Q ss_pred HHHHHHHHHHHH
Q 013886 167 MSRIDDAVERIL 178 (434)
Q Consensus 167 ~~~id~a~~ril 178 (434)
.+.|.+++++++
T Consensus 388 ~~~l~~ai~~~m 399 (442)
T PLN02208 388 KESLSNAIKSVM 399 (442)
T ss_pred HHHHHHHHHHHh
Confidence 888888888886
No 36
>PRK15452 putative protease; Provisional
Probab=25.42 E-value=1.2e+02 Score=31.55 Aligned_cols=25 Identities=12% Similarity=0.056 Sum_probs=17.7
Q ss_pred HHHHHH--hhcCCCeEEEcChhhhhhh
Q 013886 96 LTEVLK--NKLGFKGFVISDWEGLDRL 120 (434)
Q Consensus 96 l~~iLR--~~~gf~G~viSD~~~m~~~ 120 (434)
+...|+ .++|.||+|++|.+.+.-+
T Consensus 78 ~~~~l~~l~~~gvDgvIV~d~G~l~~~ 104 (443)
T PRK15452 78 FIRDLEPVIAMKPDALIMSDPGLIMMV 104 (443)
T ss_pred HHHHHHHHHhCCCCEEEEcCHHHHHHH
Confidence 334455 3789999999998876433
No 37
>PLN02670 transferase, transferring glycosyl groups
Probab=24.93 E-value=1.2e+02 Score=31.73 Aligned_cols=71 Identities=13% Similarity=0.179 Sum_probs=43.9
Q ss_pred CCeEEEcChhhh---------hhhcCCCCCChHHHHHHHHHcCCCeecCCCChHHHHHH-HHHHH------H----CCCC
Q 013886 106 FKGFVISDWEGL---------DRLSQPHGSNYRYCISTAVNAGIDMVMVPHRFDQFFED-LTYLV------E----SGKV 165 (434)
Q Consensus 106 f~G~viSD~~~m---------~~~~~~~~~~~~~~~~~al~AG~D~~l~~~~~~~~~~~-l~~av------~----~g~~ 165 (434)
=+|+|+.+|.-- +...++-|- .++.+|+.+|+=|+++|...++...+ +.+.. . +|.+
T Consensus 338 ~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGw---nS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~ 414 (472)
T PLN02670 338 GRGMIHVGWVPQVKILSHESVGGFLTHCGW---NSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGSF 414 (472)
T ss_pred CCCeEEeCcCCHHHHhcCcccceeeecCCc---chHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCcC
Confidence 347888888622 222222222 35789999999999987544332211 11111 1 2457
Q ss_pred CHHHHHHHHHHHHH
Q 013886 166 PMSRIDDAVERILR 179 (434)
Q Consensus 166 ~~~~id~a~~ril~ 179 (434)
+.+.|.+++++++.
T Consensus 415 ~~e~i~~av~~vm~ 428 (472)
T PLN02670 415 TSDSVAESVRLAMV 428 (472)
T ss_pred cHHHHHHHHHHHhc
Confidence 89999999999983
No 38
>TIGR00430 Q_tRNA_tgt tRNA-guanine transglycosylase, queuosine-34-forming. This tRNA-guanine transglycosylase (tgt) catalyzes an exchange for the guanine base at position 34 of many tRNAs; this nucleotide is subsequently modified to queuosine. The Archaea have a closely related enzyme that catalyzes a base exchange for guanine at position 15 in some tRNAs, a site that is subsequently converted to the archaeal-specific modified base archaeosine (7-formamidino-7-deazaguanosine), while Archaeoglobus fulgidus has both enzymes.
Probab=24.46 E-value=1.7e+02 Score=29.49 Aligned_cols=71 Identities=17% Similarity=0.188 Sum_probs=39.3
Q ss_pred HHhhcCCCeEEEcChhhhhhhcCC--------------------CCCChHHHHHHHHHcCCCeecCCCChHHHHHHHHHH
Q 013886 100 LKNKLGFKGFVISDWEGLDRLSQP--------------------HGSNYRYCISTAVNAGIDMVMVPHRFDQFFEDLTYL 159 (434)
Q Consensus 100 LR~~~gf~G~viSD~~~m~~~~~~--------------------~~~~~~~~~~~al~AG~D~~l~~~~~~~~~~~l~~a 159 (434)
|.+=+||+|.|+||.++..-++-. ...+.++....--.-|.|+.|.-.+..
T Consensus 74 lh~f~~w~~~ilTDSGgfQv~sl~~~~~i~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~igsDI~m~LD~~~--------- 144 (368)
T TIGR00430 74 LHKFMQWDGPILTDSGGFQVFSLSDLRKIEEEGVHFKSPIDGSKIFLTPEKSMEIQYALGSDIIMAFDECT--------- 144 (368)
T ss_pred HHHHhCCCCceeeccCcceEEecCccccCCCCceEeecCCCCceEEEcHHHHHHHHHHhCCCEEEECCcCC---------
Confidence 445688999999999875433211 012223444444455889887432110
Q ss_pred HHCCCCCHHHHHHHHHHHHHHH
Q 013886 160 VESGKVPMSRIDDAVERILRVK 181 (434)
Q Consensus 160 v~~g~~~~~~id~a~~ril~~k 181 (434)
.-..+.+++.+|+.|-+++-
T Consensus 145 --~~~~~~~~~~~av~rT~rW~ 164 (368)
T TIGR00430 145 --PYPADRDYAEKSTERTLRWA 164 (368)
T ss_pred --CCCCCHHHHHHHHHHHHHHH
Confidence 11234556666666666544
No 39
>TIGR00449 tgt_general tRNA-guanine transglycosylases, various specificities. Different tRNA-guanine transglycosylases catalyze different tRNA base modifications. Two guanine base substitutions by different enzymes described by the model are involved in generating queuosine at position 34 in bacterial tRNAs and archaeosine at position 15 in archaeal tRNAs. This model is designed for fragment searching, so the superfamily is used loosely.
Probab=24.32 E-value=1.5e+02 Score=30.05 Aligned_cols=72 Identities=18% Similarity=0.263 Sum_probs=40.3
Q ss_pred HHhhcCCCeEEEcChhhhhhhcCC-------C---------C----CChHHHHHHHHHcCCCeecCCCChHHHHHHHHHH
Q 013886 100 LKNKLGFKGFVISDWEGLDRLSQP-------H---------G----SNYRYCISTAVNAGIDMVMVPHRFDQFFEDLTYL 159 (434)
Q Consensus 100 LR~~~gf~G~viSD~~~m~~~~~~-------~---------~----~~~~~~~~~al~AG~D~~l~~~~~~~~~~~l~~a 159 (434)
|.+-+||+|.|+||.++..-++-. . | .+.++.+..--.-|.|+.|.-....
T Consensus 74 lh~f~~w~~~ilTDSGgfQv~sl~~~~~i~~~Gv~f~s~~dg~~~~ltpe~~i~~q~~ig~DI~m~LD~~~--------- 144 (367)
T TIGR00449 74 LHKFMQWDGPILTDSGGFQVFSLGDLRKIEEEGVHFKSPIDGSKIFLTPEKIMEIQYALGSDIIMALDECT--------- 144 (367)
T ss_pred HHHHcCCCCceEeccCcceeEecCcccccCCCceeeecCCCCCceecCHHHHHHHHHHHCCCEEEECCcCC---------
Confidence 456689999999999865322211 0 0 1233344334455999988532111
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHH
Q 013886 160 VESGKVPMSRIDDAVERILRVKF 182 (434)
Q Consensus 160 v~~g~~~~~~id~a~~ril~~k~ 182 (434)
.-..+.+++.+|+.|-+++-.
T Consensus 145 --~~~~~~~~~~~av~rT~rw~~ 165 (367)
T TIGR00449 145 --PPPADYDYAEESLERTLRWAE 165 (367)
T ss_pred --CCCCCHHHHHHHHHHHHHHHH
Confidence 012345677777777666543
No 40
>PLN03015 UDP-glucosyl transferase
Probab=23.80 E-value=2.1e+02 Score=30.06 Aligned_cols=72 Identities=17% Similarity=0.309 Sum_probs=44.5
Q ss_pred CCCeEEEcChhh-h--------hhhcCCCCCChHHHHHHHHHcCCCeecCCCChHHHHHH--HHHHH----------HCC
Q 013886 105 GFKGFVISDWEG-L--------DRLSQPHGSNYRYCISTAVNAGIDMVMVPHRFDQFFED--LTYLV----------ESG 163 (434)
Q Consensus 105 gf~G~viSD~~~-m--------~~~~~~~~~~~~~~~~~al~AG~D~~l~~~~~~~~~~~--l~~av----------~~g 163 (434)
+=+|+|+.+|.- + +...++-|- .++.+|+.+|+=|+++|.-.++...+ +.+.. +.+
T Consensus 333 ~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~Gw---nS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~ 409 (470)
T PLN03015 333 RGVGLVVTQWAPQVEILSHRSIGGFLSHCGW---SSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEK 409 (470)
T ss_pred ccCceEEEecCCHHHHhccCccCeEEecCCc---hhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCC
Confidence 445789988862 2 222232222 36789999999999987643332221 11111 124
Q ss_pred CCCHHHHHHHHHHHHH
Q 013886 164 KVPMSRIDDAVERILR 179 (434)
Q Consensus 164 ~~~~~~id~a~~ril~ 179 (434)
.++.+.|.+++++++.
T Consensus 410 ~v~~e~i~~~v~~lm~ 425 (470)
T PLN03015 410 VIGREEVASLVRKIVA 425 (470)
T ss_pred ccCHHHHHHHHHHHHc
Confidence 6889999999999873
No 41
>PF08262 Lem_TRP: Leucophaea maderae tachykinin-related peptide ; InterPro: IPR013206 These peptides are designated Leucophaea maderae (Madeira cockroach) tachykinin-related peptides (Lem TRPs). Some were isolated from the midgut of L. maderae, whereas others appear to be brain specific. The Lem TRPs of the brain are myotropic and induce increases in the amplitude and frequency of spontaneous contractions and tonus of hindgut muscle in L. maderae []. They were also isolated from brain-corpora, cardiaca-corpora, allata-suboesophageal ganglion extracts of Locusta migratoria (Migratory locust). They stimulate visceral muscle contractions of the oviduct and the foregut of L. migratoria [].
Probab=23.51 E-value=31 Score=15.65 Aligned_cols=6 Identities=50% Similarity=1.398 Sum_probs=4.1
Q ss_pred cCCCeE
Q 013886 104 LGFKGF 109 (434)
Q Consensus 104 ~gf~G~ 109 (434)
|||+|+
T Consensus 4 mgf~g~ 9 (10)
T PF08262_consen 4 MGFHGM 9 (10)
T ss_pred cccccc
Confidence 677775
No 42
>PLN00414 glycosyltransferase family protein
Probab=23.22 E-value=1.9e+02 Score=30.05 Aligned_cols=72 Identities=21% Similarity=0.294 Sum_probs=44.0
Q ss_pred CCCeEEEcChhhh---------hhhcCCCCCChHHHHHHHHHcCCCeecCCCChHHHH--HHHHHHHH---------CCC
Q 013886 105 GFKGFVISDWEGL---------DRLSQPHGSNYRYCISTAVNAGIDMVMVPHRFDQFF--EDLTYLVE---------SGK 164 (434)
Q Consensus 105 gf~G~viSD~~~m---------~~~~~~~~~~~~~~~~~al~AG~D~~l~~~~~~~~~--~~l~~av~---------~g~ 164 (434)
+=+|+|+.+|.-- +.+.++-|- .++.+|+.+|+=|+++|...++.. +.+.+..+ +|.
T Consensus 310 ~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~---nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~ 386 (446)
T PLN00414 310 KGRGIVWEGWVEQPLILSHPSVGCFVNHCGF---GSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGW 386 (446)
T ss_pred cCCCeEEeccCCHHHHhcCCccceEEecCch---hHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCc
Confidence 3468888887521 222222221 357899999999999886443222 22222111 135
Q ss_pred CCHHHHHHHHHHHHH
Q 013886 165 VPMSRIDDAVERILR 179 (434)
Q Consensus 165 ~~~~~id~a~~ril~ 179 (434)
++.+.|.+++++++.
T Consensus 387 ~~~~~i~~~v~~~m~ 401 (446)
T PLN00414 387 FSKESLRDTVKSVMD 401 (446)
T ss_pred cCHHHHHHHHHHHhc
Confidence 788999999999873
No 43
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=22.11 E-value=3.1e+02 Score=24.19 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=22.5
Q ss_pred cCCCceEEEEeeCCCCccccCCCCCccCCcchHHHHHHHHcCCCeEEEEEcCCceec
Q 013886 301 AGDFSFAIAAVGEEPYAETLGDNSELIIPLNGGDVISLVAERIPTLAILVSGRPLVL 357 (434)
Q Consensus 301 a~~ad~~iv~~g~~~~~~~~gd~~~l~l~~~q~~li~~v~~~~~~vvV~~~g~P~~l 357 (434)
+..+|+++|.+|. +.|..++.+....-+.-+++..|..++.
T Consensus 99 ~~~pdiv~vglG~----------------PkQE~~~~~~~~~l~~~v~i~vG~~~d~ 139 (172)
T PF03808_consen 99 ASGPDIVFVGLGA----------------PKQERWIARHRQRLPAGVIIGVGGAFDF 139 (172)
T ss_pred HcCCCEEEEECCC----------------CHHHHHHHHHHHHCCCCEEEEECchhhh
Confidence 4566776666664 2566777776663232244444555543
No 44
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=21.99 E-value=1.8e+02 Score=28.30 Aligned_cols=18 Identities=17% Similarity=0.095 Sum_probs=14.5
Q ss_pred HHHHHHHHcCCCeecCCC
Q 013886 130 YCISTAVNAGIDMVMVPH 147 (434)
Q Consensus 130 ~~~~~al~AG~D~~l~~~ 147 (434)
+.+.+++.+|+|++|..+
T Consensus 200 eqa~ea~~agaDiI~LDn 217 (284)
T PRK06096 200 KEAIAALRAQPDVLQLDK 217 (284)
T ss_pred HHHHHHHHcCCCEEEECC
Confidence 446789999999999743
No 45
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=21.84 E-value=5.4e+02 Score=22.41 Aligned_cols=81 Identities=14% Similarity=0.110 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCCCeecCCCChHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCCCCcchhhhhcchhHHHH
Q 013886 129 RYCISTAVNAGIDMVMVPHRFDQFFEDLTYLVESGKVPMSRIDDAVERILRVKFVAGLFEYPFSDKSLLNIVGCKLHREL 208 (434)
Q Consensus 129 ~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av~~g~~~~~~id~a~~ril~~k~~~gl~~~p~~~~~~~~~~~~~~~~~l 208 (434)
.+.+..|.++|+|.++....+.. . .++ .++.+.+-+++|.... +.++-=-.+..+.. .+..++-.++
T Consensus 68 ~~~a~~a~~~Gad~i~v~~~~~~---~-----~~~--~~~~~~~~~~~i~~~~-~~~~pv~iy~~p~~--~~~~~~~~~~ 134 (201)
T cd00945 68 VAEVEEAIDLGADEIDVVINIGS---L-----KEG--DWEEVLEEIAAVVEAA-DGGLPLKVILETRG--LKTADEIAKA 134 (201)
T ss_pred HHHHHHHHHcCCCEEEEeccHHH---H-----hCC--CHHHHHHHHHHHHHHh-cCCceEEEEEECCC--CCCHHHHHHH
Confidence 34578899999999986433210 0 011 2455566666665542 12221000000100 0122344566
Q ss_pred HHHHHhccEEEccc
Q 013886 209 AREAVRKSLVLLKN 222 (434)
Q Consensus 209 a~~~a~~sivLLKN 222 (434)
++.+....++.+|.
T Consensus 135 ~~~~~~~g~~~iK~ 148 (201)
T cd00945 135 ARIAAEAGADFIKT 148 (201)
T ss_pred HHHHHHhCCCEEEe
Confidence 66666778888888
No 46
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=21.82 E-value=2e+02 Score=29.95 Aligned_cols=49 Identities=20% Similarity=0.367 Sum_probs=33.1
Q ss_pred HHHHHHHHcCCCeecCCCChHHHH--HHHHHHHH-----CCCCCHHHHHHHHHHHH
Q 013886 130 YCISTAVNAGIDMVMVPHRFDQFF--EDLTYLVE-----SGKVPMSRIDDAVERIL 178 (434)
Q Consensus 130 ~~~~~al~AG~D~~l~~~~~~~~~--~~l~~av~-----~g~~~~~~id~a~~ril 178 (434)
.++.+|+.+|+=|+++|...++.. +.+.+..+ ++.++.+.|.+++++++
T Consensus 353 nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~v~~av~~lm 408 (451)
T PLN02410 353 NSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEGDLDRGAVERAVKRLM 408 (451)
T ss_pred hHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCCcccHHHHHHHHHHHH
Confidence 367899999999999876443322 22222212 24678888999999886
No 47
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=20.56 E-value=1.1e+02 Score=31.15 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=8.6
Q ss_pred HHHHHHHcCCCeec
Q 013886 131 CISTAVNAGIDMVM 144 (434)
Q Consensus 131 ~~~~al~AG~D~~l 144 (434)
++..|+++|+|+++
T Consensus 55 RA~~AL~~GaDLVi 68 (388)
T PF05636_consen 55 RAEMALKNGADLVI 68 (388)
T ss_dssp HHHHHHHHT-SEEE
T ss_pred HHHHHHHcCCCEEE
Confidence 35667777777764
No 48
>PLN02554 UDP-glycosyltransferase family protein
Probab=20.35 E-value=1.7e+02 Score=30.71 Aligned_cols=49 Identities=16% Similarity=0.234 Sum_probs=34.3
Q ss_pred HHHHHHHcCCCeecCCCChHHHHHH--HHHHHH-----------------CCCCCHHHHHHHHHHHHH
Q 013886 131 CISTAVNAGIDMVMVPHRFDQFFED--LTYLVE-----------------SGKVPMSRIDDAVERILR 179 (434)
Q Consensus 131 ~~~~al~AG~D~~l~~~~~~~~~~~--l~~av~-----------------~g~~~~~~id~a~~ril~ 179 (434)
++.+|+.+|+=|+++|...++...+ +.+... .+.++.++|.+++++++.
T Consensus 372 S~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~ 439 (481)
T PLN02554 372 SILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLME 439 (481)
T ss_pred hHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhc
Confidence 5789999999999988655443333 222211 145788999999999873
No 49
>PF08261 Carcinustatin: Carcinustatin peptide
Probab=20.17 E-value=49 Score=13.93 Aligned_cols=6 Identities=67% Similarity=1.420 Sum_probs=2.4
Q ss_pred ccccCC
Q 013886 420 PLGFGL 425 (434)
Q Consensus 420 pFG~GL 425 (434)
|+.|||
T Consensus 3 py~fgl 8 (8)
T PF08261_consen 3 PYSFGL 8 (8)
T ss_pred cccccC
Confidence 334443
No 50
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=20.15 E-value=7.6e+02 Score=23.51 Aligned_cols=44 Identities=18% Similarity=0.166 Sum_probs=24.6
Q ss_pred HHhhcCCCeEEEcChhhhhhhcCC--CCCChHH--HHHHHHHcCCCee
Q 013886 100 LKNKLGFKGFVISDWEGLDRLSQP--HGSNYRY--CISTAVNAGIDMV 143 (434)
Q Consensus 100 LR~~~gf~G~viSD~~~m~~~~~~--~~~~~~~--~~~~al~AG~D~~ 143 (434)
|=++.||+.+.++|++.|..+... ...++.+ ...+++..|++.-
T Consensus 27 l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p 74 (254)
T cd06557 27 LADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRA 74 (254)
T ss_pred HHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCC
Confidence 446778888888888776543221 1123322 2345666666644
Done!