Query 013887
Match_columns 434
No_of_seqs 250 out of 1219
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 08:23:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013887.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013887hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 100.0 4.8E-81 1E-85 670.5 44.7 406 19-434 13-428 (623)
2 PF12819 Malectin_like: Carboh 100.0 1.2E-68 2.6E-73 536.8 32.9 319 34-367 1-347 (347)
3 PF11721 Malectin: Di-glucose 99.8 1.3E-21 2.7E-26 178.0 6.5 154 201-362 2-174 (174)
4 PF11721 Malectin: Di-glucose 99.7 8.7E-17 1.9E-21 146.3 8.6 141 31-177 2-174 (174)
5 PLN03150 hypothetical protein; 99.4 8.1E-12 1.8E-16 135.1 15.0 152 32-184 194-364 (623)
6 PF12819 Malectin_like: Carboh 99.3 1.1E-11 2.4E-16 124.8 13.0 153 204-370 1-164 (347)
7 KOG3593 Predicted receptor-lik 97.7 1.9E-05 4.1E-10 75.2 2.1 103 262-366 108-227 (355)
8 PF08263 LRRNT_2: Leucine rich 96.1 0.0074 1.6E-07 41.5 3.5 35 376-416 2-43 (43)
9 KOG3593 Predicted receptor-lik 93.5 0.058 1.3E-06 52.0 3.0 145 15-165 45-197 (355)
10 PLN00113 leucine-rich repeat r 73.8 5.5 0.00012 45.7 5.8 51 373-434 25-79 (968)
11 PF03422 CBM_6: Carbohydrate b 41.6 2E+02 0.0043 23.7 12.6 84 273-364 32-123 (125)
12 KOG2230 Predicted beta-mannosi 40.3 3.9E+02 0.0085 29.0 11.6 162 241-415 29-206 (867)
13 COG3459 Cellobiose phosphoryla 36.7 17 0.00037 41.1 1.3 25 400-427 992-1016(1056)
14 PRK06764 hypothetical protein; 33.9 41 0.00089 26.6 2.6 18 90-107 74-91 (105)
15 PF03422 CBM_6: Carbohydrate b 31.7 2.9E+02 0.0063 22.6 9.7 86 86-179 30-123 (125)
16 PF07172 GRP: Glycine rich pro 27.8 38 0.00082 27.6 1.6 8 16-23 15-22 (95)
17 PF15240 Pro-rich: Proline-ric 22.7 52 0.0011 29.9 1.7 19 10-28 2-20 (179)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=100.00 E-value=4.8e-81 Score=670.48 Aligned_cols=406 Identities=34% Similarity=0.620 Sum_probs=329.6
Q ss_pred hhcccccCCCCccEEEccCCCCCc-cCCCCCeEeeCCCCccCCCcccccCCCCCCCcccceeeeeCCCCCCCceEEEeeC
Q 013887 19 PLSLASSYPYKASYRIDCGSATST-TDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSSGKKNCYIIPNL 97 (434)
Q Consensus 19 ~~~~~~~~~~~~~isIdCG~~~~~-~D~~g~~w~~Dd~~~~~G~~~~i~~~~~~~~~~y~t~R~Fp~~~g~r~cYtlpv~ 97 (434)
++.+++++|.+++|+||||++++. +|.+||+|++|.. +..|.......+ ....++|+|+|+||.++|++|||+||+.
T Consensus 13 ~~~~~~~~~~~~~~~I~CGs~~~~~~d~~~~~w~~D~~-~~~~~~~~~~~~-~~~~~~~~t~R~F~~~~g~~~cY~~~~~ 90 (623)
T PLN03150 13 AVLASLASPEPFTMRISCGARVNVRTAPTNTLWYKDFA-YTGGIPANATRP-SFIAPPLKTLRYFPLSDGPENCYNINRV 90 (623)
T ss_pred HhhcccccCCCccEEEeCCCCCCcccCCCCCEEcCCcc-cccCccccccCc-ccccchhhccccCCcccccccceEeeec
Confidence 344444555677799999999876 7789999999643 344433322222 2345789999999987799999999988
Q ss_pred CCceEEEEEEeecCCCCCCCCCCcEEEEECCEEEEecCCCCCcccCCCceEEEEEEEecCCeEEEEEeecCCCCceeEeE
Q 013887 98 PPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASL 177 (434)
Q Consensus 98 ~~g~YlvRl~F~ygnyd~~~~~~~Fdv~lg~~~~l~~~~~~~~~~~~~~~~~E~i~~~~~~~l~vclv~~~~~~pFIs~i 177 (434)
++|+|||||||+|||||+.++.|.|||++|++.|.+....+.. ....++||+|+.++++.++|||++++.|+||||+|
T Consensus 91 ~~g~ylVRl~F~~~~y~~~~~~~~Fdv~~~~~~~~tv~~~~~~--~~~~v~~E~i~~~~~~~l~vcf~~~~~~~pFIs~i 168 (623)
T PLN03150 91 PKGHYSVRVFFGLVAEPNFDSEPLFDVSVEGTQISSLKSGWSS--HDEQVFAEALVFLTDGSASICFHSTGHGDPAILSI 168 (623)
T ss_pred CCCcEEEEEEeecCCcCCCCCCCceEEEECcEEEEEEecCccc--CCCcEEEEEEEEecCCcEEEEEecCCCCCCceeEE
Confidence 8999999999999999998888999999999776554322222 23568899999999999999999999999999999
Q ss_pred EEEEcCCCCccccc-ccccceeeeeecccCCCCCCCCCCCCCCCcC--CCCCcCCCCCCCCCCCCCeeEeeccceeecCC
Q 013887 178 EVQQIDPLSYDAAT-IGNNHILVNYGRLTSGSNQWGPGFSNDADDF--GRSWQSDAASRSPNAKSSIKSVTTRERITNTN 254 (434)
Q Consensus 178 Elr~l~~~~Y~~~~-~~~~~~l~~~~Rin~G~~~~~~~~~y~~D~~--dR~W~~d~~~~~~~~~~~~~~ist~~~i~~~~ 254 (434)
||||||+++|.... .+++.+|++++|+|||+......++|++|++ ||+|.+|..|.. ..+..+++...|+++.
T Consensus 169 Ev~~l~~~~y~~~~~~~~~~~L~~~~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~~~~----~~~~~~st~~~I~~~~ 244 (623)
T PLN03150 169 EILQVDDKAYNFGPSWGQGVILRTAKRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGS----GSDQAISTENVIKKAS 244 (623)
T ss_pred EEEEcCcccccccccccCceEEEEEEEEEecCcccccccCCCCCcccCccccCcCcccCC----Cccccccccccccccc
Confidence 99999999996432 2345679999999999865333478999999 999999987763 2355677777787665
Q ss_pred CCCCCCcHHHHHhhhccC---CceEEEEEeCCCCcEEEEEEEEeeecccCCCceEEEEEEECCE-EccccceecccCC-c
Q 013887 255 QPPNYYPMKLYQTAIVSS---GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDK-NVTRVDIFNSVGS-F 329 (434)
Q Consensus 255 ~~~~~~P~~VyqTAr~~~---~~lt~~~~v~~~~~Y~v~LhFaEi~~~~~~~~~R~FdV~iNg~-~~~~~di~~~~g~-~ 329 (434)
+.++.+|+.||||||++. .+++|.|++++++.|+|||||||++......++|+|+|+|||+ ...++|+....|. .
T Consensus 245 ~~~~~~P~~VyqTA~~~~~~~~~lty~~~v~~~~~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~g~~~ 324 (623)
T PLN03150 245 NAPNFYPESLYQSALVSTDTQPDLSYTMDVDPNRNYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDIVKMSGERY 324 (623)
T ss_pred CCCccChHHHhhhhccccCCCCceEEEeecCCCCCEEEEEEEEeccCccCCCceEEEEEEECCEEeecccChhhhcCCcc
Confidence 556779999999999983 4799999999899999999999998544566899999999999 5788998776665 6
Q ss_pred ceEEEEEEEEecCCceEEEEEeecCCC-ceeeEEEEEEecCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCC
Q 013887 330 AAYSWHYVAKNLSSTELTVKLVPVVGA-ALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWD 408 (434)
Q Consensus 330 ~~~~~~~~v~~~~~g~l~i~~~~~~~s-p~lNAiEI~~~~~~~~~T~~~Dv~ai~~ik~~~~~~~~~~W~GDPC~P~~~~ 408 (434)
.++++++.+.. +++.|+|+|+|..++ |+|||||||++.+....|.++|+.||+++|+.++.+...+|+||||.|.. +
T Consensus 325 ~~~~~~~~v~~-~~g~l~isl~p~~~s~pilNaiEI~~~~~~~~~t~~~~~~aL~~~k~~~~~~~~~~W~g~~C~p~~-~ 402 (623)
T PLN03150 325 TALVLNKTVAV-SGRTLTIVLQPKKGTHAIINAIEVFEIITAESKTLLEEVSALQTLKSSLGLPLRFGWNGDPCVPQQ-H 402 (623)
T ss_pred cceEEEeEEee-cCCeEEEEEeeCCCCcceeeeeeeeeccccccccCchHHHHHHHHHHhcCCcccCCCCCCCCCCcc-c
Confidence 78888888764 458899999998887 99999999999998888999999999999999987543489999999988 7
Q ss_pred CCceeeeCCCCCCCcceEEEEecCCC
Q 013887 409 AWEGITCHPNKDETAVVISQMNSSLW 434 (434)
Q Consensus 409 ~W~g~~C~~~~~~~~~~i~~l~LS~~ 434 (434)
.|.|+.|+.+......+|..|+|++|
T Consensus 403 ~w~Gv~C~~~~~~~~~~v~~L~L~~n 428 (623)
T PLN03150 403 PWSGADCQFDSTKGKWFIDGLGLDNQ 428 (623)
T ss_pred ccccceeeccCCCCceEEEEEECCCC
Confidence 99999997543323356888888765
No 2
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=100.00 E-value=1.2e-68 Score=536.83 Aligned_cols=319 Identities=27% Similarity=0.472 Sum_probs=249.6
Q ss_pred EccCCCCC---ccC-CCCCeEeeCCCCccCCCcccccCC----CCCCCcccceeeeeCCCCCCCceEEEeeC--CCceEE
Q 013887 34 IDCGSATS---TTD-PFNTTWQADDRYYTSGATSIVSEP----LHFRFPHEKTLRYFPPSSGKKNCYIIPNL--PPGRYY 103 (434)
Q Consensus 34 IdCG~~~~---~~D-~~g~~w~~Dd~~~~~G~~~~i~~~----~~~~~~~y~t~R~Fp~~~g~r~cYtlpv~--~~g~Yl 103 (434)
||||++.+ ++| .+||+|++|+.++.+|+++.++.. .....++|+|||+|| +|.|+||+||+. +++|||
T Consensus 1 IdCG~~~~~s~y~D~~tg~~~~~D~~~~~~g~~~~i~~~~~~~~~~~~~~y~taR~F~--~g~r~cY~l~~~~~~~~~yl 78 (347)
T PF12819_consen 1 IDCGSSSNSSSYVDDSTGRTWVSDDDFIDTGKSGNISSQPDSSSSDSSPPYQTARIFP--EGSRNCYTLPVTPPGGGKYL 78 (347)
T ss_pred CcCCCCCCCcccccCCCCcEEeCCCCcccCCCccccccccCCcCCccccccceEEEcC--CCCccEEEeeccCCCCceEE
Confidence 79999876 345 689999999988889988777421 124578999999999 477899999997 355999
Q ss_pred EEEEeecCCCCCCC-----CCCcEEEEECCEEEEecCCCCCcccCCCceEEEEEEEec-CCeEEEEEeecCCCC-ceeEe
Q 013887 104 IRTFTVYDNYDGKS-----HSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVK-DGELDLCFYSFATDP-PVIAS 176 (434)
Q Consensus 104 vRl~F~ygnyd~~~-----~~~~Fdv~lg~~~~l~~~~~~~~~~~~~~~~~E~i~~~~-~~~l~vclv~~~~~~-pFIs~ 176 (434)
|||||+|||||+++ .++.|||++|++.|.+.. .......++++|+++.+. ++.|+|||+|++.|. |||||
T Consensus 79 iRl~F~~gnyd~~~fs~~~~~~~FdL~~~~n~~~tV~---~~~~~~~~~~~E~ii~v~~~~~l~vclv~~~~g~~pFIsa 155 (347)
T PF12819_consen 79 IRLHFYYGNYDGLNFSVSSSPPTFDLLLGFNFWSTVN---LSNSPSSPVVKEFIINVTWSDTLSVCLVPTGSGTFPFISA 155 (347)
T ss_pred EEEEeccccccccccccccCCcceEEEECCceeEEEE---ecCCCcceEEEEEEEEEcCCCcEEEEEEeCCCCCCCceeE
Confidence 99999999999874 257799999999854422 221112468999777676 799999999999887 99999
Q ss_pred EEEEEcCCCCcccccccccceeeeeecccCCCCCCCCCCCCCCCcCCCCCcCCCCCCCCCCCCCeeEeeccceee-cCCC
Q 013887 177 LEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERIT-NTNQ 255 (434)
Q Consensus 177 iElr~l~~~~Y~~~~~~~~~~l~~~~Rin~G~~~~~~~~~y~~D~~dR~W~~d~~~~~~~~~~~~~~ist~~~i~-~~~~ 255 (434)
|||||||+++|+.....++.+|++++|+|||+... .+||++|++||+|.+... ...|..+++..+|+ ....
T Consensus 156 iEl~~lp~~ly~~~~~~~s~~L~~~~R~n~G~~~~--~iryp~D~~dR~W~~~~~------~~~~~~ist~~~i~~~~~~ 227 (347)
T PF12819_consen 156 IELRPLPDSLYPDTDANSSQALETVYRLNVGGSSS--FIRYPDDTYDRIWQPYSS------SPGWSNISTTSNININSSN 227 (347)
T ss_pred EEEEECCccceeccccCCCceeEEEEeecCCCccc--ccCCCCCcceeecccccc------CccccccccceeeecccCC
Confidence 99999999999533234567899999999998642 278999999999996521 24577888777776 3334
Q ss_pred CCCCCcHHHHHhhhcc---C--CceEEEEEeCCCCcEEEEEEEEeeecccCCCceEEEEEEECCEEccccceecc-cCC-
Q 013887 256 PPNYYPMKLYQTAIVS---S--GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNS-VGS- 328 (434)
Q Consensus 256 ~~~~~P~~VyqTAr~~---~--~~lt~~~~v~~~~~Y~v~LhFaEi~~~~~~~~~R~FdV~iNg~~~~~~di~~~-~g~- 328 (434)
.++.+|.+|||||+++ + -+++|.+ ++++..|+||||||||+......++|+|+|+|||+.... ++... .+.
T Consensus 228 ~~~~~P~~V~~TA~~~~~~s~~~nltw~~-~~~~~~y~v~lHFaEi~~~~~~~~~R~F~IyiN~~~~~~-~~~~~~~~~~ 305 (347)
T PF12819_consen 228 NPYDAPSAVYQTARTPSNSSDPLNLTWSF-VDPGFSYYVRLHFAEIQSLSPNNNQREFDIYINGQTAYS-DVSPPYLGAD 305 (347)
T ss_pred ccCcChHHHHHhhhcccccccceEEEecc-CCCCccEEEEEEEeecccccCCCCeEEEEEEECCeEccC-ccCcccccCc
Confidence 4566999999999999 2 2567777 788889999999999998545566899999999995433 44332 122
Q ss_pred cceEEEEEEEEecCCceEEEEEeecCCC---ceeeEEEEEEe
Q 013887 329 FAAYSWHYVAKNLSSTELTVKLVPVVGA---ALISGLENYAL 367 (434)
Q Consensus 329 ~~~~~~~~~v~~~~~g~l~i~~~~~~~s---p~lNAiEI~~~ 367 (434)
..+.++++.+....++.++|+|+|+.+| |||||+|||+|
T Consensus 306 ~~~~~~d~~~~~~~~~~~~isL~~t~~S~lppiLNalEIy~v 347 (347)
T PF12819_consen 306 TVPYYSDYVVNVPDSGFLNISLGPTPDSTLPPILNALEIYKV 347 (347)
T ss_pred ceEeecceEEEecCCCEEEEEEEeCCCCCcCceeEeeeeEeC
Confidence 4566777877654556899999999887 99999999986
No 3
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.84 E-value=1.3e-21 Score=178.05 Aligned_cols=154 Identities=25% Similarity=0.395 Sum_probs=94.6
Q ss_pred eecccCCCCCCCCCCCCCCCcCCCCCcCCCCCCCCCCCCCeeEeeccceeecCCCCCCCCcHHHHHhhhccCCceEEEEE
Q 013887 201 YGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTAIVSSGAIQYNLA 280 (434)
Q Consensus 201 ~~Rin~G~~~~~~~~~y~~D~~dR~W~~d~~~~~~~~~~~~~~ist~~~i~~~~~~~~~~P~~VyqTAr~~~~~lt~~~~ 280 (434)
++|||||+.. + +|..++.|.+|+.|..+...-.+..-............+...++.+|||+|.....++|.+|
T Consensus 2 ~~~IN~Gg~~------~-~~~~g~~w~~D~~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~~f~Y~ip 74 (174)
T PF11721_consen 2 VLRINAGGPA------Y-TDSSGIVWEADQYYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPSSFSYDIP 74 (174)
T ss_dssp EEEEEETSSS------E-EETTTEEE-SSSSSTTSS-----------SSTTS--TTS-HHHHHTTT-----SSSEEEEEE
T ss_pred EEEEECCCCc------c-cCCCCCEEcCCCCCCCCCcccccccccccccccccccccCCCchhhhHhhcCCCCceEEEEe
Confidence 5799999874 2 57789999999987644320000000000000001111223467899999996447999999
Q ss_pred eCCCCcEEEEEEEEeeeccc----CCCceEEEEEEECCE-EccccceecccCCc-ceEEEEE-EEEecCCceEEEEEe--
Q 013887 281 VDAKLDYLIWFHFAEIDSSV----TKAGQRVFDILVNDK-NVTRVDIFNSVGSF-AAYSWHY-VAKNLSSTELTVKLV-- 351 (434)
Q Consensus 281 v~~~~~Y~v~LhFaEi~~~~----~~~~~R~FdV~iNg~-~~~~~di~~~~g~~-~~~~~~~-~v~~~~~g~l~i~~~-- 351 (434)
+.++|.|.|+|||||+.... ..+++|+|||+|||+ ++++|||+..+|+. ++.++.+ .+. +++|.|+|.|.
T Consensus 75 ~~~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~~~v~-v~dg~L~i~f~~~ 153 (174)
T PF11721_consen 75 VVPNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRFFNVT-VTDGTLNIQFVWA 153 (174)
T ss_dssp --S-EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEEEEEEE-EETTEEETTEEEE
T ss_pred cCCCcEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEEEEEEE-EeCCcEEEEEEec
Confidence 66678999999999998742 238899999999999 68999999999885 4777766 443 57888999999
Q ss_pred ----------ecCCCceeeEE
Q 013887 352 ----------PVVGAALISGL 362 (434)
Q Consensus 352 ----------~~~~sp~lNAi 362 (434)
+..+.|+||||
T Consensus 154 ~~~~~~i~~~~~~~~p~IsaI 174 (174)
T PF11721_consen 154 GKGTLCIPFIGSYGNPLISAI 174 (174)
T ss_dssp --SEEEEEEESSSSSSSEEEE
T ss_pred CCCcEEeeccccCCCcEEeeC
Confidence 55666999997
No 4
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.68 E-value=8.7e-17 Score=146.28 Aligned_cols=141 Identities=28% Similarity=0.401 Sum_probs=91.0
Q ss_pred cEEEccCCCCCccCCCCCeEeeCCCCccCCCcc------------cccCCC--CCCCcccceeeeeCCCCCCCceEEEee
Q 013887 31 SYRIDCGSATSTTDPFNTTWQADDRYYTSGATS------------IVSEPL--HFRFPHEKTLRYFPPSSGKKNCYIIPN 96 (434)
Q Consensus 31 ~isIdCG~~~~~~D~~g~~w~~Dd~~~~~G~~~------------~i~~~~--~~~~~~y~t~R~Fp~~~g~r~cYtlpv 96 (434)
.++||||++.- +|..|..|.+ |.++.+|... ...... ...+.+|+|.|+-+. .+.|.||+
T Consensus 2 ~~~IN~Gg~~~-~~~~g~~w~~-D~~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~----~f~Y~ip~ 75 (174)
T PF11721_consen 2 VLRINAGGPAY-TDSSGIVWEA-DQYYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPS----SFSYDIPV 75 (174)
T ss_dssp EEEEEETSSSE-EETTTEEE-S-SSSSTTSS-----------SSTTS--TTS-HHHHHTTT-----SS----SEEEEEE-
T ss_pred EEEEECCCCcc-cCCCCCEEcC-CCCCCCCCcccccccccccccccccccccCCCchhhhHhhcCCCC----ceEEEEec
Confidence 37899999754 7789999999 5555544330 000111 123579999999663 48999996
Q ss_pred CCCceEEEEEEeecCCCCC-----CCCCCcEEEEECCEEEEecCCCCCcccCCC-ceEEEE-EEEecCCeEEEEEee---
Q 013887 97 LPPGRYYIRTFTVYDNYDG-----KSHSPSFDVSVEGTLVFSWRSPWPEGLARD-GAYSDL-FAFVKDGELDLCFYS--- 166 (434)
Q Consensus 97 ~~~g~YlvRl~F~ygnyd~-----~~~~~~Fdv~lg~~~~l~~~~~~~~~~~~~-~~~~E~-i~~~~~~~l~vclv~--- 166 (434)
.++|.|.|||||....+.. ....++|||++++..++++++++.+.+... ++++++ -+.++++.|.|+|..
T Consensus 76 ~~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg~L~i~f~~~~~ 155 (174)
T PF11721_consen 76 VPNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDGTLNIQFVWAGK 155 (174)
T ss_dssp -S-EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEEEEEEEEETTEEETTEEEE--
T ss_pred CCCcEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEEEEEEEEeCCcEEEEEEecCC
Confidence 6999999999998554433 134789999999999999999987765544 567776 446799999999996
Q ss_pred --------cCCCCceeEeE
Q 013887 167 --------FATDPPVIASL 177 (434)
Q Consensus 167 --------~~~~~pFIs~i 177 (434)
...+.|.||||
T Consensus 156 ~~~~i~~~~~~~~p~IsaI 174 (174)
T PF11721_consen 156 GTLCIPFIGSYGNPLISAI 174 (174)
T ss_dssp SEEEEEEESSSSSSSEEEE
T ss_pred CcEEeeccccCCCcEEeeC
Confidence 34567888887
No 5
>PLN03150 hypothetical protein; Provisional
Probab=99.36 E-value=8.1e-12 Score=135.10 Aligned_cols=152 Identities=14% Similarity=0.170 Sum_probs=106.6
Q ss_pred EEEccCCCCCc--cC----CC--CCeEeeCCCCccCC-C----cccccC----CCCCCCcccceeeeeCCCCCCCceEEE
Q 013887 32 YRIDCGSATST--TD----PF--NTTWQADDRYYTSG-A----TSIVSE----PLHFRFPHEKTLRYFPPSSGKKNCYII 94 (434)
Q Consensus 32 isIdCG~~~~~--~D----~~--g~~w~~Dd~~~~~G-~----~~~i~~----~~~~~~~~y~t~R~Fp~~~g~r~cYtl 94 (434)
.+||||++... .| .- .|.|.+|+.|.... . ...|.. +...+...|+|+|.+... ....+|++
T Consensus 194 ~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~~~~~~~~~~st~~~I~~~~~~~~~~P~~VyqTA~~~~~~-~~~lty~~ 272 (623)
T PLN03150 194 KRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGSGSDQAISTENVIKKASNAPNFYPESLYQSALVSTDT-QPDLSYTM 272 (623)
T ss_pred EEEEecCcccccccCCCCCcccCccccCcCcccCCCcccccccccccccccCCCccChHHHhhhhccccCC-CCceEEEe
Confidence 58999986422 22 22 69999976654311 1 111211 111245589999998642 23579999
Q ss_pred eeCCCceEEEEEEeecCCCC-CCCCCCcEEEEECCEEEEecCCCCCccc-CCCceEEEEEEEecCCeEEEEEeecCCCCc
Q 013887 95 PNLPPGRYYIRTFTVYDNYD-GKSHSPSFDVSVEGTLVFSWRSPWPEGL-ARDGAYSDLFAFVKDGELDLCFYSFATDPP 172 (434)
Q Consensus 95 pv~~~g~YlvRl~F~ygnyd-~~~~~~~Fdv~lg~~~~l~~~~~~~~~~-~~~~~~~E~i~~~~~~~l~vclv~~~~~~p 172 (434)
++.+++.|+||+||..-... .....++|||++++..+++.+++..... ...++++++.+.+.++.|.|+|++.....|
T Consensus 273 ~v~~~~~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~g~~~~~~~~~~~v~~~~g~l~isl~p~~~s~p 352 (623)
T PLN03150 273 DVDPNRNYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDIVKMSGERYTALVLNKTVAVSGRTLTIVLQPKKGTHA 352 (623)
T ss_pred ecCCCCCEEEEEEEEeccCccCCCceEEEEEEECCEEeecccChhhhcCCcccceEEEeEEeecCCeEEEEEeeCCCCcc
Confidence 98788999999999864322 2334689999999999888887643222 234677888877778899999999866679
Q ss_pred eeEeEEEEEcCC
Q 013887 173 VIASLEVQQIDP 184 (434)
Q Consensus 173 FIs~iElr~l~~ 184 (434)
+||||||..+..
T Consensus 353 ilNaiEI~~~~~ 364 (623)
T PLN03150 353 IINAIEVFEIIT 364 (623)
T ss_pred eeeeeeeeeccc
Confidence 999999999876
No 6
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=99.33 E-value=1.1e-11 Score=124.76 Aligned_cols=153 Identities=25% Similarity=0.282 Sum_probs=104.5
Q ss_pred ccCCCCCCCCCCC-CCCCcCCCCCcCCCCCCCCCCCCCeeEeeccceeecCCCCCCCCcHHHHHhhhccC--CceEEEEE
Q 013887 204 LTSGSNQWGPGFS-NDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTAIVSS--GAIQYNLA 280 (434)
Q Consensus 204 in~G~~~~~~~~~-y~~D~~dR~W~~d~~~~~~~~~~~~~~ist~~~i~~~~~~~~~~P~~VyqTAr~~~--~~lt~~~~ 280 (434)
|+||+... .. |.|+..+|.|.+|..|...+ . +..|....+.....+...|+|||... ..-.|+|+
T Consensus 1 IdCG~~~~---~s~y~D~~tg~~~~~D~~~~~~g---~------~~~i~~~~~~~~~~~~~~y~taR~F~~g~r~cY~l~ 68 (347)
T PF12819_consen 1 IDCGSSSN---SSSYVDDSTGRTWVSDDDFIDTG---K------SGNISSQPDSSSSDSSPPYQTARIFPEGSRNCYTLP 68 (347)
T ss_pred CcCCCCCC---CcccccCCCCcEEeCCCCcccCC---C------ccccccccCCcCCccccccceEEEcCCCCccEEEee
Confidence 68998642 23 56777899999999775311 1 11221000100113556899999983 45899999
Q ss_pred eC--CCCcEEEEEEEEeeecccCC----CceEEEEEEECCEEccccceecccCCcceEEEEEEEEecCCceEEEEEeecC
Q 013887 281 VD--AKLDYLIWFHFAEIDSSVTK----AGQRVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVV 354 (434)
Q Consensus 281 v~--~~~~Y~v~LhFaEi~~~~~~----~~~R~FdV~iNg~~~~~~di~~~~g~~~~~~~~~~v~~~~~g~l~i~~~~~~ 354 (434)
+. .+++|+|||||.-....... ...-.|+++++...+..+++.. ....+++++|.+....++.|.|.|.++.
T Consensus 69 ~~~~~~~~yliRl~F~~gnyd~~~fs~~~~~~~FdL~~~~n~~~tV~~~~--~~~~~~~~E~ii~v~~~~~l~vclv~~~ 146 (347)
T PF12819_consen 69 VTPPGGGKYLIRLHFYYGNYDGLNFSVSSSPPTFDLLLGFNFWSTVNLSN--SPSSPVVKEFIINVTWSDTLSVCLVPTG 146 (347)
T ss_pred ccCCCCceEEEEEEeccccccccccccccCCcceEEEECCceeEEEEecC--CCcceEEEEEEEEEcCCCcEEEEEEeCC
Confidence 86 45699999999977542111 1134699999998665554432 1135688898887544689999999998
Q ss_pred -CC-ceeeEEEEEEecCC
Q 013887 355 -GA-ALISGLENYALVPN 370 (434)
Q Consensus 355 -~s-p~lNAiEI~~~~~~ 370 (434)
+. |+||||||..+++.
T Consensus 147 ~g~~pFIsaiEl~~lp~~ 164 (347)
T PF12819_consen 147 SGTFPFISAIELRPLPDS 164 (347)
T ss_pred CCCCCceeEEEEEECCcc
Confidence 66 99999999999874
No 7
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=97.68 E-value=1.9e-05 Score=75.22 Aligned_cols=103 Identities=22% Similarity=0.304 Sum_probs=76.5
Q ss_pred HHHHHhhhccCCceEEEEEeCCCCcEEEEEEEEeeecccCCCceEEEEEEEC-CE-EccccceecccCC-cce--EEEE-
Q 013887 262 MKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVN-DK-NVTRVDIFNSVGS-FAA--YSWH- 335 (434)
Q Consensus 262 ~~VyqTAr~~~~~lt~~~~v~~~~~Y~v~LhFaEi~~~~~~~~~R~FdV~iN-g~-~~~~~di~~~~g~-~~~--~~~~- 335 (434)
..+|||+|.....+.|..|.+..|.|-+.|-|||... +..+..+|||-+| +. .++..|++...|. .++ .+..
T Consensus 108 ~ily~ter~neetFgyd~pik~dgdyalvlkfaevyF--~~~q~kvfdvrln~sh~vVk~ldi~~~vg~rg~AhDe~i~~ 185 (355)
T KOG3593|consen 108 IILYQTERYNEETFGYDVPIKEDGDYALVLKFAEVYF--KTCQHKVFDVRLNCSHCVVKALDIFDQVGDRGKAHDEIIPC 185 (355)
T ss_pred hhhhhhcccchhhhcccccccCCCceehhhhHHHHHH--HhhhhhheeeeeccceeEEeccchhhhcCCCcccccceEEE
Confidence 4689999986555778888888899999999999986 5678999999999 66 5788898888773 222 1111
Q ss_pred ------EE----EEecCCceEEEEEeecC-CCceeeEEEEEE
Q 013887 336 ------YV----AKNLSSTELTVKLVPVV-GAALISGLENYA 366 (434)
Q Consensus 336 ------~~----v~~~~~g~l~i~~~~~~-~sp~lNAiEI~~ 366 (434)
+. +...+.|+++|+|.+.. .+|.+||..|++
T Consensus 186 ~i~~gkls~~gess~~t~gkl~le~~kg~ldnpk~~a~aIl~ 227 (355)
T KOG3593|consen 186 LIGQGKLSVCGESSISTLGKLNLEFLKGVLDNPKDCARAILV 227 (355)
T ss_pred EEcCceEEEEeeeEEeecceEEEEeecccCCChhhhhHHHhh
Confidence 11 11124578999998875 459999988875
No 8
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=96.09 E-value=0.0074 Score=41.52 Aligned_cols=35 Identities=43% Similarity=0.925 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHcCC-C--CCCCCC----CCCcCCCCCCCCceeeeC
Q 013887 376 PEQVIAMRALKESLRV-P--DRMGWN----GDPCAPTNWDAWEGITCH 416 (434)
Q Consensus 376 ~~Dv~ai~~ik~~~~~-~--~~~~W~----GDPC~P~~~~~W~g~~C~ 416 (434)
++|+.||+++|+.+.. + ...+|. .|||. |.||.|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~------W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCS------WSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCC------STTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCee------eccEEeC
Confidence 5789999999999884 2 234896 47876 9999994
No 9
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=93.53 E-value=0.058 Score=51.97 Aligned_cols=145 Identities=17% Similarity=0.188 Sum_probs=84.6
Q ss_pred HHHhhhcccccCCCCccEEEccCCCCCccCCCCCeEeeCCCC---cc--CCCccccc-CCCCCCCcccceeeeeCCCCCC
Q 013887 15 LLVLPLSLASSYPYKASYRIDCGSATSTTDPFNTTWQADDRY---YT--SGATSIVS-EPLHFRFPHEKTLRYFPPSSGK 88 (434)
Q Consensus 15 ~~~~~~~~~~~~~~~~~isIdCG~~~~~~D~~g~~w~~Dd~~---~~--~G~~~~i~-~~~~~~~~~y~t~R~Fp~~~g~ 88 (434)
++++.....|+-|..--.-++||++. .+|..|+.|-.|-.- .. -|..-.+. ....-...+|+|.|+-.+
T Consensus 45 v~v~~ga~Taa~~~svI~aVncGgda-avd~ygI~f~aD~~~~VGrasd~G~~l~i~~raeeed~ily~ter~nee---- 119 (355)
T KOG3593|consen 45 VDVVRGAPTAALPSSVIPAVNCGGDA-AVDNYGIRFAADPLEGVGRASDYGMVLGIGCRAEEEDIILYQTERYNEE---- 119 (355)
T ss_pred eeeeccCccccCchhhhheeccCChh-hhcccceEeeccccccccccCCccceeeccccCChhhhhhhhhcccchh----
Confidence 33444455666666554679999964 488889999885421 10 12111111 100112458999999754
Q ss_pred CceEEEeeCCCceEEEEEEeecCCCCCCCCCCcEEEEEC-CEEEEecCCCCCcccCCCceEEEEEE-EecCCeEEEEEe
Q 013887 89 KNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVE-GTLVFSWRSPWPEGLARDGAYSDLFA-FVKDGELDLCFY 165 (434)
Q Consensus 89 r~cYtlpv~~~g~YlvRl~F~ygnyd~~~~~~~Fdv~lg-~~~~l~~~~~~~~~~~~~~~~~E~i~-~~~~~~l~vclv 165 (434)
.+-|.+|+...|.|-+=+.|..--|+.- +.-.||+.++ ...+.+.-++....+...-..-|+|. ....+.|.+|-.
T Consensus 120 tFgyd~pik~dgdyalvlkfaevyF~~~-q~kvfdvrln~sh~vVk~ldi~~~vg~rg~AhDe~i~~~i~~gkls~~ge 197 (355)
T KOG3593|consen 120 TFGYDVPIKEDGDYALVLKFAEVYFKTC-QHKVFDVRLNCSHCVVKALDIFDQVGDRGKAHDEIIPCLIGQGKLSVCGE 197 (355)
T ss_pred hhcccccccCCCceehhhhHHHHHHHhh-hhhheeeeeccceeEEeccchhhhcCCCcccccceEEEEEcCceEEEEee
Confidence 4779999988899988899963224431 2347999999 77777766665443211112234433 234455555543
No 10
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=73.83 E-value=5.5 Score=45.66 Aligned_cols=51 Identities=27% Similarity=0.520 Sum_probs=36.5
Q ss_pred CCChHHHHHHHHHHHHcCCC--CCCCCCC--CCcCCCCCCCCceeeeCCCCCCCcceEEEEecCCC
Q 013887 373 STVPEQVIAMRALKESLRVP--DRMGWNG--DPCAPTNWDAWEGITCHPNKDETAVVISQMNSSLW 434 (434)
Q Consensus 373 ~T~~~Dv~ai~~ik~~~~~~--~~~~W~G--DPC~P~~~~~W~g~~C~~~~~~~~~~i~~l~LS~~ 434 (434)
-+.++|..|+.++|+.+.-+ ...+|.. |+|. |+|+.|+.. .+|+.|+|++|
T Consensus 25 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~------w~gv~c~~~-----~~v~~L~L~~~ 79 (968)
T PLN00113 25 MLHAEELELLLSFKSSINDPLKYLSNWNSSADVCL------WQGITCNNS-----SRVVSIDLSGK 79 (968)
T ss_pred CCCHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCc------CcceecCCC-----CcEEEEEecCC
Confidence 34678999999999998532 1237853 5663 999999631 47888998875
No 11
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=41.55 E-value=2e+02 Score=23.65 Aligned_cols=84 Identities=19% Similarity=0.248 Sum_probs=50.7
Q ss_pred CceEEE-EEeCCCCcEEEEEEEEeeecccCCCceEEEEEEECC---EEccccceecccCCcceE-EEEEEEEecCCceEE
Q 013887 273 GAIQYN-LAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVND---KNVTRVDIFNSVGSFAAY-SWHYVAKNLSSTELT 347 (434)
Q Consensus 273 ~~lt~~-~~v~~~~~Y~v~LhFaEi~~~~~~~~~R~FdV~iNg---~~~~~~di~~~~g~~~~~-~~~~~v~~~~~g~l~ 347 (434)
..+.|. .+++..+.|.+.+..+--. +.+.+.|++|| ..+..+++-. .|+.... .....+. ...|...
T Consensus 32 ~~~~~~~Vd~~~~g~y~~~~~~a~~~------~~~~~~l~id~~~g~~~~~~~~~~-tg~w~~~~~~~~~v~-l~~G~h~ 103 (125)
T PF03422_consen 32 DWIEYNNVDVPEAGTYTLTIRYANGG------GGGTIELRIDGPDGTLIGTVSLPP-TGGWDTWQTVSVSVK-LPAGKHT 103 (125)
T ss_dssp TEEEEEEEEESSSEEEEEEEEEEESS------SSEEEEEEETTTTSEEEEEEEEE--ESSTTEEEEEEEEEE-EESEEEE
T ss_pred CEEEEEEEeeCCCceEEEEEEEECCC------CCcEEEEEECCCCCcEEEEEEEcC-CCCccccEEEEEEEe-eCCCeeE
Confidence 458888 8888889999998887532 22889999999 5555565532 3432221 1122232 2347777
Q ss_pred EEEeecCCC---ceeeEEEE
Q 013887 348 VKLVPVVGA---ALISGLEN 364 (434)
Q Consensus 348 i~~~~~~~s---p~lNAiEI 364 (434)
|.|....+. +-|..|++
T Consensus 104 i~l~~~~~~~~~~niD~~~f 123 (125)
T PF03422_consen 104 IYLVFNGGDGWAFNIDYFQF 123 (125)
T ss_dssp EEEEESSSSSB-EEEEEEEE
T ss_pred EEEEEECCCCceEEeEEEEE
Confidence 777766543 44444443
No 12
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=40.31 E-value=3.9e+02 Score=29.02 Aligned_cols=162 Identities=17% Similarity=0.237 Sum_probs=80.7
Q ss_pred eeEeeccceeecCCCCCCCCcHHHHHhhhcc-----CCceEEEEEeCCCCcEEEEEEEEeeecccCC-----CceEEEEE
Q 013887 241 IKSVTTRERITNTNQPPNYYPMKLYQTAIVS-----SGAIQYNLAVDAKLDYLIWFHFAEIDSSVTK-----AGQRVFDI 310 (434)
Q Consensus 241 ~~~ist~~~i~~~~~~~~~~P~~VyqTAr~~-----~~~lt~~~~v~~~~~Y~v~LhFaEi~~~~~~-----~~~R~FdV 310 (434)
|.--+.+.+++.+...|-..=+++||+.... ...|.|.|-..++.+|-=.+.--|+...... .-.-+=.|
T Consensus 29 w~~~~~n~t~~~~g~vpg~i~s~l~~~gii~~~~~~~n~ln~kwia~d~wtysr~frl~dl~~~~~~~l~ie~vdtia~v 108 (867)
T KOG2230|consen 29 WEFSSSNKTVNGTGTVPGDIYSDLYASGIIDNPLFGENHLNLKWIAEDDWTYSRKFRLIDLDDTVGAFLEIESVDTIATV 108 (867)
T ss_pred eEEecCCCceecCCCCCchHhHHHHhcccccCccccccccceeEEeccCccceeeeEEEEccccccceEEEeecceeEEE
Confidence 4433444556655444444556788888775 2347888876666677554444555432110 11345678
Q ss_pred EECCEE-ccccceecccCCcceEEEEEEEEecCCceEEEEEeecCCCceeeEEEE--EEecCC-CCCCChH--HHHHHHH
Q 013887 311 LVNDKN-VTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLEN--YALVPN-DLSTVPE--QVIAMRA 384 (434)
Q Consensus 311 ~iNg~~-~~~~di~~~~g~~~~~~~~~~v~~~~~g~l~i~~~~~~~sp~lNAiEI--~~~~~~-~~~T~~~--Dv~ai~~ 384 (434)
++||+. +..- ..+.++..+++....+...+.+.|.....-|-.-|-|- +++++. ++.-.-. -+.-|++
T Consensus 109 ~~n~~~v~~s~------n~f~~y~~~vt~ii~~~n~i~~~f~ssv~yA~~~~~~~~k~svPPdC~p~iyhGECH~NfiRK 182 (867)
T KOG2230|consen 109 YVNGQKVLHSR------NQFLPYHVNVTDIIAGENDITIKFKSSVKYAEKRADEYKKHSLPPDCNPDIYHGECHQNFIRK 182 (867)
T ss_pred EEccEEEeecc------ccceeEEEeEEEEecCCcceEEEeehhHHHHHHHHHhhhccCCCCCCCchhhccchHHHHHHH
Confidence 999984 3311 12445544554443333456777665422111111111 333332 1110000 1223333
Q ss_pred HHHHcCCCCCCCCCCCCcCCCCCCCCceeee
Q 013887 385 LKESLRVPDRMGWNGDPCAPTNWDAWEGITC 415 (434)
Q Consensus 385 ik~~~~~~~~~~W~GDPC~P~~~~~W~g~~C 415 (434)
.|-++ .|...|-+|... .|.-+.-
T Consensus 183 ~Q~SF------sWDWGPsfPt~G-I~k~v~i 206 (867)
T KOG2230|consen 183 AQYSF------AWDWGPSFPTVG-IPSTITI 206 (867)
T ss_pred hhcce------ecccCCCCccCC-CCcceEE
Confidence 33332 688899999884 7876654
No 13
>COG3459 Cellobiose phosphorylase [Carbohydrate transport and metabolism]
Probab=36.67 E-value=17 Score=41.11 Aligned_cols=25 Identities=28% Similarity=0.701 Sum_probs=19.2
Q ss_pred CCcCCCCCCCCceeeeCCCCCCCcceEE
Q 013887 400 DPCAPTNWDAWEGITCHPNKDETAVVIS 427 (434)
Q Consensus 400 DPC~P~~~~~W~g~~C~~~~~~~~~~i~ 427 (434)
|||+|.+ |+|..|.+.-.+.+-.|+
T Consensus 992 dP~lP~e---w~G~~~~~~~~~~~~~i~ 1016 (1056)
T COG3459 992 DPCLPEE---WDGYEATYELRNAPYDIT 1016 (1056)
T ss_pred cCCCCcc---cCCeEEEEEECCceEEEE
Confidence 9999977 999999876555555554
No 14
>PRK06764 hypothetical protein; Provisional
Probab=33.89 E-value=41 Score=26.62 Aligned_cols=18 Identities=44% Similarity=0.643 Sum_probs=15.9
Q ss_pred ceEEEeeCCCceEEEEEE
Q 013887 90 NCYIIPNLPPGRYYIRTF 107 (434)
Q Consensus 90 ~cYtlpv~~~g~YlvRl~ 107 (434)
|.||+.-.++|+|.||..
T Consensus 74 nkyti~f~kpg~yvirvn 91 (105)
T PRK06764 74 NKYTIRFSKPGKYVIRVN 91 (105)
T ss_pred eeeEEEecCCccEEEEEc
Confidence 789999889999999973
No 15
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=31.65 E-value=2.9e+02 Score=22.63 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=47.2
Q ss_pred CCCCceEE-EeeCCCceEEEEEEeecCCCCCCCCCCcEEEEECC---EEEEecCCCCCcccCCCceEEEE--EEEecCCe
Q 013887 86 SGKKNCYI-IPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEG---TLVFSWRSPWPEGLARDGAYSDL--FAFVKDGE 159 (434)
Q Consensus 86 ~g~r~cYt-lpv~~~g~YlvRl~F~ygnyd~~~~~~~Fdv~lg~---~~~l~~~~~~~~~~~~~~~~~E~--i~~~~~~~ 159 (434)
.|...+|+ +.+...|.|.|++...-+. + ...++|++++ ..+.+ ..+-.+. .-..+.+. .+....|.
T Consensus 30 ~G~~~~~~~Vd~~~~g~y~~~~~~a~~~--~---~~~~~l~id~~~g~~~~~-~~~~~tg--~w~~~~~~~~~v~l~~G~ 101 (125)
T PF03422_consen 30 NGDWIEYNNVDVPEAGTYTLTIRYANGG--G---GGTIELRIDGPDGTLIGT-VSLPPTG--GWDTWQTVSVSVKLPAGK 101 (125)
T ss_dssp TTTEEEEEEEEESSSEEEEEEEEEEESS--S---SEEEEEEETTTTSEEEEE-EEEE-ES--STTEEEEEEEEEEEESEE
T ss_pred CCCEEEEEEEeeCCCceEEEEEEEECCC--C---CcEEEEEECCCCCcEEEE-EEEcCCC--CccccEEEEEEEeeCCCe
Confidence 46667999 9888889999996665332 2 2589999998 44332 1111111 11123333 33334466
Q ss_pred EEEEEeecCCC--CceeEeEEE
Q 013887 160 LDLCFYSFATD--PPVIASLEV 179 (434)
Q Consensus 160 l~vclv~~~~~--~pFIs~iEl 179 (434)
=.|.|+-.+.+ .+-|-.|++
T Consensus 102 h~i~l~~~~~~~~~~niD~~~f 123 (125)
T PF03422_consen 102 HTIYLVFNGGDGWAFNIDYFQF 123 (125)
T ss_dssp EEEEEEESSSSSB-EEEEEEEE
T ss_pred eEEEEEEECCCCceEEeEEEEE
Confidence 66666655433 244544443
No 16
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=27.78 E-value=38 Score=27.55 Aligned_cols=8 Identities=25% Similarity=0.218 Sum_probs=3.4
Q ss_pred HHhhhccc
Q 013887 16 LVLPLSLA 23 (434)
Q Consensus 16 ~~~~~~~~ 23 (434)
++|++++.
T Consensus 15 ~lLlisSe 22 (95)
T PF07172_consen 15 ALLLISSE 22 (95)
T ss_pred HHHHHHhh
Confidence 34444433
No 17
>PF15240 Pro-rich: Proline-rich
Probab=22.72 E-value=52 Score=29.94 Aligned_cols=19 Identities=11% Similarity=0.030 Sum_probs=9.3
Q ss_pred HHHHHHHHhhhcccccCCC
Q 013887 10 FFLSLLLVLPLSLASSYPY 28 (434)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~ 28 (434)
|++||.|+||++++|+...
T Consensus 2 LlVLLSvALLALSSAQ~~d 20 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQSTD 20 (179)
T ss_pred hhHHHHHHHHHhhhccccc
Confidence 3444445555555555433
Done!