Query 013888
Match_columns 434
No_of_seqs 177 out of 1332
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 08:24:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013888.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013888hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00452 actin; Provisional 100.0 6E-88 1.3E-92 663.7 31.6 362 1-433 4-375 (375)
2 PTZ00466 actin-like protein; P 100.0 2E-85 4.4E-90 646.2 32.3 358 3-433 13-380 (380)
3 KOG0676 Actin and related prot 100.0 1.5E-86 3.2E-91 632.0 23.3 357 1-433 6-372 (372)
4 PTZ00281 actin; Provisional 100.0 4.2E-85 9.2E-90 645.3 30.0 361 2-433 6-376 (376)
5 PTZ00004 actin-2; Provisional 100.0 8.9E-83 1.9E-87 629.7 31.3 362 2-433 6-378 (378)
6 KOG0679 Actin-related protein 100.0 5.3E-81 1.1E-85 576.3 24.4 362 3-432 12-425 (426)
7 PTZ00280 Actin-related protein 100.0 1.1E-79 2.4E-84 615.1 33.5 365 2-431 4-408 (414)
8 KOG0680 Actin-related protein 100.0 6.2E-78 1.3E-82 543.0 28.3 393 2-433 3-399 (400)
9 PF00022 Actin: Actin; InterP 100.0 5.8E-78 1.3E-82 601.8 25.5 360 2-433 4-393 (393)
10 KOG0677 Actin-related protein 100.0 1.6E-77 3.5E-82 525.8 21.3 359 2-431 4-386 (389)
11 smart00268 ACTIN Actin. ACTIN 100.0 4.4E-76 9.6E-81 583.7 30.7 363 3-433 2-373 (373)
12 cd00012 ACTIN Actin; An ubiqui 100.0 3.9E-73 8.5E-78 562.0 31.1 359 4-431 1-371 (371)
13 COG5277 Actin and related prot 100.0 1.2E-71 2.6E-76 549.6 30.1 378 3-433 7-444 (444)
14 KOG0681 Actin-related protein 100.0 5.8E-64 1.3E-68 479.7 25.5 422 2-433 23-640 (645)
15 KOG0678 Actin-related protein 100.0 6.9E-59 1.5E-63 420.1 15.1 370 3-430 5-407 (415)
16 KOG0797 Actin-related protein 100.0 5.8E-42 1.3E-46 326.4 18.6 362 56-433 177-615 (618)
17 PRK13930 rod shape-determining 100.0 1.1E-36 2.4E-41 297.6 18.4 316 2-406 8-327 (335)
18 PRK13927 rod shape-determining 100.0 3.3E-36 7.1E-41 294.0 17.1 313 1-406 4-323 (334)
19 TIGR00904 mreB cell shape dete 100.0 1.4E-33 3E-38 275.1 16.3 314 4-406 4-326 (333)
20 PRK13929 rod-share determining 100.0 1.2E-32 2.6E-37 268.0 15.9 309 3-404 5-323 (335)
21 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 6.2E-30 1.3E-34 243.8 12.8 315 2-406 1-320 (326)
22 PRK13928 rod shape-determining 100.0 2.7E-29 5.8E-34 245.1 13.4 315 3-406 4-322 (336)
23 COG1077 MreB Actin-like ATPase 99.9 1.7E-21 3.6E-26 179.3 12.3 317 2-405 6-329 (342)
24 TIGR02529 EutJ ethanolamine ut 99.7 3.6E-15 7.8E-20 138.0 17.1 135 61-217 28-165 (239)
25 PRK15080 ethanolamine utilizat 99.6 6.3E-14 1.4E-18 132.0 19.0 163 4-216 26-191 (267)
26 CHL00094 dnaK heat shock prote 99.4 3.9E-12 8.4E-17 133.9 18.3 188 1-198 1-237 (621)
27 PRK13411 molecular chaperone D 99.4 8.3E-12 1.8E-16 131.8 17.9 188 1-198 1-236 (653)
28 PTZ00400 DnaK-type molecular c 99.4 2.4E-11 5.2E-16 128.4 18.8 187 2-198 41-276 (663)
29 PRK00290 dnaK molecular chaper 99.4 2.7E-11 5.8E-16 127.9 19.0 188 1-198 1-235 (627)
30 TIGR01991 HscA Fe-S protein as 99.3 2.1E-11 4.6E-16 127.6 16.4 186 4-199 1-232 (599)
31 TIGR02350 prok_dnaK chaperone 99.3 2.3E-11 5E-16 127.8 15.7 185 4-198 2-233 (595)
32 PRK13410 molecular chaperone D 99.3 1.1E-10 2.4E-15 123.1 20.5 188 1-198 1-237 (668)
33 PLN03184 chloroplast Hsp70; Pr 99.3 1E-10 2.3E-15 123.7 19.2 188 1-198 38-274 (673)
34 PRK01433 hscA chaperone protei 99.3 6E-11 1.3E-15 123.6 17.1 186 3-199 20-244 (595)
35 PTZ00186 heat shock 70 kDa pre 99.3 1.9E-10 4.1E-15 120.9 20.4 186 2-198 27-262 (657)
36 PRK05183 hscA chaperone protei 99.2 1.8E-10 3.8E-15 121.0 16.7 185 4-199 21-252 (616)
37 PTZ00009 heat shock 70 kDa pro 99.2 2E-10 4.4E-15 121.4 17.2 101 94-198 141-244 (653)
38 PF00012 HSP70: Hsp70 protein; 99.1 1.6E-09 3.5E-14 114.4 13.4 100 94-198 136-238 (602)
39 PRK11678 putative chaperone; P 99.0 2.8E-08 6E-13 100.2 20.7 180 4-193 2-260 (450)
40 PRK09472 ftsA cell division pr 99.0 8E-10 1.7E-14 111.0 6.4 207 106-406 165-387 (420)
41 TIGR01174 ftsA cell division p 98.9 2.4E-09 5.1E-14 106.2 7.1 101 105-221 156-257 (371)
42 COG0443 DnaK Molecular chapero 98.8 8.8E-08 1.9E-12 99.5 16.5 187 2-198 5-222 (579)
43 TIGR03739 PRTRC_D PRTRC system 98.8 1.1E-07 2.4E-12 92.3 15.5 184 7-199 2-215 (320)
44 PRK13917 plasmid segregation p 98.7 3.9E-07 8.4E-12 89.1 16.7 80 120-200 151-234 (344)
45 COG0849 ftsA Cell division ATP 98.6 1.8E-07 3.9E-12 92.3 10.5 213 106-407 164-380 (418)
46 TIGR01175 pilM type IV pilus a 98.3 1.2E-05 2.5E-10 79.2 13.0 100 105-217 141-245 (348)
47 PF11104 PilM_2: Type IV pilus 98.0 5.5E-05 1.2E-09 74.1 11.4 119 71-196 86-223 (340)
48 KOG0104 Molecular chaperones G 97.7 0.00041 8.9E-09 71.4 12.5 99 94-199 159-276 (902)
49 PF06406 StbA: StbA protein; 97.6 0.00067 1.4E-08 65.8 12.5 186 4-198 2-212 (318)
50 COG4820 EutJ Ethanolamine util 97.4 0.00024 5.2E-09 61.9 4.6 62 116-189 115-176 (277)
51 COG4972 PilM Tfp pilus assembl 97.3 0.0015 3.3E-08 61.5 9.5 42 153-196 195-236 (354)
52 TIGR00241 CoA_E_activ CoA-subs 97.3 0.014 3E-07 54.5 15.6 43 354-404 206-248 (248)
53 PRK10719 eutA reactivating fac 97.0 0.0032 7E-08 62.7 8.5 163 4-191 8-184 (475)
54 KOG0101 Molecular chaperones H 96.9 0.0099 2.1E-07 61.3 11.9 96 94-196 144-245 (620)
55 KOG0100 Molecular chaperones G 96.9 0.016 3.6E-07 55.9 12.0 116 94-216 173-298 (663)
56 TIGR03286 methan_mark_15 putat 96.8 0.0085 1.8E-07 58.9 10.0 48 351-406 355-402 (404)
57 KOG0103 Molecular chaperones H 96.8 0.051 1.1E-06 56.1 15.8 101 92-199 136-247 (727)
58 COG1924 Activator of 2-hydroxy 95.7 0.42 9.1E-06 46.3 14.6 44 355-406 346-389 (396)
59 PF06277 EutA: Ethanolamine ut 95.0 0.28 6E-06 49.3 11.2 175 4-203 5-204 (473)
60 PRK11031 guanosine pentaphosph 94.2 0.31 6.8E-06 50.2 10.1 90 93-191 78-170 (496)
61 TIGR03706 exo_poly_only exopol 93.9 0.26 5.7E-06 47.3 8.4 94 92-192 71-164 (300)
62 KOG0102 Molecular chaperones m 92.8 1.5 3.2E-05 44.6 11.6 115 94-215 161-284 (640)
63 PRK10854 exopolyphosphatase; P 91.6 0.91 2E-05 47.1 9.1 91 92-191 82-175 (513)
64 TIGR02261 benz_CoA_red_D benzo 90.6 0.36 7.7E-06 45.1 4.5 50 353-405 213-262 (262)
65 COG0248 GppA Exopolyphosphatas 89.5 0.69 1.5E-05 47.3 5.9 76 108-192 89-168 (492)
66 TIGR02259 benz_CoA_red_A benzo 88.8 0.7 1.5E-05 45.5 5.0 52 351-405 381-432 (432)
67 PRK13317 pantothenate kinase; 87.2 0.74 1.6E-05 43.6 4.1 71 331-406 201-273 (277)
68 TIGR03192 benz_CoA_bzdQ benzoy 87.0 0.37 8E-06 45.6 2.0 49 350-405 238-286 (293)
69 COG4819 EutA Ethanolamine util 86.0 5 0.00011 38.4 8.7 155 4-188 7-180 (473)
70 PF14450 FtsA: Cell division p 84.3 4 8.6E-05 33.2 6.6 57 154-219 2-69 (120)
71 PF02541 Ppx-GppA: Ppx/GppA ph 79.1 3 6.6E-05 39.6 4.8 77 108-192 72-151 (285)
72 COG1548 Predicted transcriptio 79.0 1.3 2.9E-05 40.6 2.1 23 150-172 129-151 (330)
73 PF01968 Hydantoinase_A: Hydan 78.2 2 4.3E-05 41.0 3.2 26 150-175 76-101 (290)
74 PF01869 BcrAD_BadFG: BadF/Bad 76.8 0.52 1.1E-05 44.4 -1.2 66 332-405 206-271 (271)
75 TIGR03123 one_C_unchar_1 proba 72.5 3.4 7.4E-05 39.8 3.1 27 150-176 127-153 (318)
76 PF08841 DDR: Diol dehydratase 69.4 25 0.00054 33.1 7.8 95 109-216 97-191 (332)
77 COG2441 Predicted butyrate kin 69.1 7.8 0.00017 36.2 4.4 48 150-197 162-213 (374)
78 PRK13321 pantothenate kinase; 66.0 38 0.00082 31.6 8.7 19 4-22 2-20 (256)
79 COG1521 Pantothenate kinase ty 61.8 99 0.0021 28.8 10.3 19 4-22 2-20 (251)
80 PRK13324 pantothenate kinase; 55.3 1.6E+02 0.0035 27.5 10.7 18 4-21 2-19 (258)
81 PRK05082 N-acetylmannosamine k 53.3 19 0.00042 34.1 4.4 67 331-405 220-286 (291)
82 COG4012 Uncharacterized protei 52.6 83 0.0018 29.4 7.9 26 149-174 225-250 (342)
83 TIGR00671 baf pantothenate kin 51.3 91 0.002 28.8 8.4 18 5-22 2-19 (243)
84 PF03702 UPF0075: Uncharacteri 48.1 13 0.00027 36.8 2.2 26 352-377 285-310 (364)
85 PRK13318 pantothenate kinase; 47.0 1.1E+02 0.0024 28.5 8.3 113 5-163 3-136 (258)
86 cd08627 PI-PLCc_gamma1 Catalyt 46.4 42 0.00091 30.6 5.1 45 73-123 74-118 (229)
87 cd08630 PI-PLCc_delta3 Catalyt 45.9 41 0.0009 31.3 5.1 45 73-123 74-118 (258)
88 cd08632 PI-PLCc_eta1 Catalytic 45.4 43 0.00094 31.1 5.1 45 73-123 74-118 (253)
89 TIGR03367 queuosine_QueD queuo 45.4 43 0.00092 25.8 4.4 49 65-121 42-91 (92)
90 cd08626 PI-PLCc_beta4 Catalyti 45.4 42 0.00092 31.2 5.1 45 73-123 76-120 (257)
91 cd08595 PI-PLCc_zeta Catalytic 45.1 43 0.00093 31.2 5.0 44 73-122 74-117 (257)
92 PRK13310 N-acetyl-D-glucosamin 44.6 28 0.00061 33.2 4.1 60 112-176 88-147 (303)
93 PRK09557 fructokinase; Reviewe 44.1 30 0.00065 33.0 4.2 66 332-404 232-298 (301)
94 cd08629 PI-PLCc_delta1 Catalyt 43.8 46 0.00099 31.0 5.0 44 73-122 74-117 (258)
95 cd08596 PI-PLCc_epsilon Cataly 43.7 47 0.001 30.9 5.1 44 73-122 74-117 (254)
96 cd08593 PI-PLCc_delta Catalyti 43.3 46 0.001 31.0 5.0 44 73-122 74-117 (257)
97 cd08631 PI-PLCc_delta4 Catalyt 43.1 47 0.001 31.0 5.0 44 73-122 74-117 (258)
98 cd08594 PI-PLCc_eta Catalytic 43.1 49 0.0011 30.2 5.0 44 73-122 74-117 (227)
99 cd08633 PI-PLCc_eta2 Catalytic 41.9 52 0.0011 30.6 5.1 45 73-123 74-118 (254)
100 cd08591 PI-PLCc_beta Catalytic 41.9 51 0.0011 30.7 5.0 45 73-123 76-120 (257)
101 cd08592 PI-PLCc_gamma Catalyti 41.7 53 0.0012 30.0 5.0 45 73-123 74-118 (229)
102 TIGR00555 panK_eukar pantothen 41.0 28 0.00061 32.9 3.3 68 331-403 209-278 (279)
103 cd08598 PI-PLC1c_yeast Catalyt 40.2 57 0.0012 29.9 5.0 44 73-122 74-117 (231)
104 PRK09698 D-allose kinase; Prov 37.5 55 0.0012 31.1 4.8 59 112-176 96-154 (302)
105 cd08597 PI-PLCc_PRIP_metazoa C 37.4 64 0.0014 30.2 5.0 45 73-123 74-118 (260)
106 cd08558 PI-PLCc_eukaryota Cata 35.6 76 0.0016 29.0 5.0 45 73-123 74-118 (226)
107 cd08628 PI-PLCc_gamma2 Catalyt 34.2 80 0.0017 29.4 5.0 44 73-122 74-117 (254)
108 cd08623 PI-PLCc_beta1 Catalyti 34.2 79 0.0017 29.5 5.0 45 73-123 76-121 (258)
109 cd08624 PI-PLCc_beta2 Catalyti 31.4 92 0.002 29.1 5.0 44 73-122 76-120 (261)
110 cd08625 PI-PLCc_beta3 Catalyti 29.9 93 0.002 29.1 4.8 44 73-122 76-120 (258)
111 PF09693 Phage_XkdX: Phage unc 29.6 27 0.00058 22.3 0.8 10 413-422 25-34 (40)
112 PRK09585 anmK anhydro-N-acetyl 29.1 52 0.0011 32.5 3.1 24 353-376 288-311 (365)
113 PRK00976 hypothetical protein; 28.7 83 0.0018 30.5 4.3 26 150-176 148-173 (326)
114 smart00842 FtsA Cell division 28.6 1.3E+02 0.0027 26.4 5.3 22 63-84 36-57 (187)
115 PF08735 DUF1786: Putative pyr 27.0 69 0.0015 29.8 3.3 26 150-175 166-191 (254)
116 TIGR01669 phage_XkdX phage unc 26.6 28 0.00062 22.9 0.6 10 413-422 30-39 (45)
117 COG0145 HyuA N-methylhydantoin 25.9 60 0.0013 34.9 3.1 26 150-175 275-302 (674)
118 cd08599 PI-PLCc_plant Catalyti 24.8 1.6E+02 0.0034 27.0 5.2 47 74-127 75-121 (228)
119 PF03727 Hexokinase_2: Hexokin 24.5 66 0.0014 29.7 2.8 42 363-407 198-240 (243)
120 KOG2960 Protein involved in th 23.4 90 0.002 28.3 3.2 58 345-407 69-127 (328)
121 PLN02230 phosphoinositide phos 23.0 1.4E+02 0.003 31.7 5.0 44 73-122 187-230 (598)
122 TIGR00744 ROK_glcA_fam ROK fam 22.8 92 0.002 29.8 3.6 59 112-176 89-148 (318)
123 TIGR00039 6PTHBS 6-pyruvoyl te 22.5 1.1E+02 0.0023 25.0 3.4 50 65-121 44-95 (124)
124 PLN02222 phosphoinositide phos 22.2 1.4E+02 0.003 31.5 4.8 44 74-123 177-220 (581)
125 PLN02952 phosphoinositide phos 22.0 1.5E+02 0.0033 31.3 5.1 44 73-122 196-239 (599)
126 PLN02228 Phosphoinositide phos 20.4 1.7E+02 0.0037 30.8 5.0 45 73-123 179-223 (567)
127 PF02782 FGGY_C: FGGY family o 20.1 61 0.0013 28.4 1.6 46 352-406 150-195 (198)
128 TIGR01174 ftsA cell division p 20.0 2.8E+02 0.006 27.3 6.4 24 354-377 317-340 (371)
No 1
>PTZ00452 actin; Provisional
Probab=100.00 E-value=6e-88 Score=663.65 Aligned_cols=362 Identities=29% Similarity=0.548 Sum_probs=335.4
Q ss_pred CCCeEEEEcCCcceEEeecCCCCCCeeeecCceeeCCC--------CceecCcccccccccccccceeecccCCCcccCh
Q 013888 1 MSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSS--------KKFIHPSPTAASATEDLTSAAVRRPIDRGYLINS 72 (434)
Q Consensus 1 ~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~--------~~~~~g~~~~~~~~~d~~~~~~~~p~~~g~i~~~ 72 (434)
|+++||||+||+++|+||||++.|+.++||++++++.. +++++|+++. . ....+.+++|+++|.|.||
T Consensus 4 ~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~iG~~~~--~--~~~~~~l~~Pi~~G~I~dw 79 (375)
T PTZ00452 4 QYPAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQ--A--KRGVLAIKEPIQNGIINSW 79 (375)
T ss_pred CCCEEEEECCCCeEEEeeCCCCCcCEEecceeEEECCccccccccccceEEChhhh--c--cccCcEEcccCcCCEEcCH
Confidence 67899999999999999999999999999999987643 2467898875 2 2345889999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCCCCCCc
Q 013888 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQC 152 (434)
Q Consensus 73 d~~e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~~t 152 (434)
|.+|.+|+|+|.+.|+++|+++|||++|++++++..|++++|+|||.|++|+++++++++|++| ++| ++|
T Consensus 80 d~~e~iw~~~f~~~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lsly------a~g----~~t 149 (375)
T PTZ00452 80 DDIEIIWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLY------TSG----KTI 149 (375)
T ss_pred HHHHHHHHHHHHhhcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHH------HCC----Cce
Confidence 9999999999988899999999999999999999999999999999999999999999999999 888 999
Q ss_pred EEEEecCCCceEEEeccCceecccccEEecccHHHHHHHHHHHHhhcCCCCC--ChHHHHHHHHhhcccccccHHHHHHH
Q 013888 153 SLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVM--DETFIIDDVKEKLCFVSLDVARDLQI 230 (434)
Q Consensus 153 glVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~--~~~~~~~~iKe~~c~v~~~~~~~~~~ 230 (434)
|||||+|++.|+|+||+||+++++++.++++||+++|++|+++|..+++++. .+...+++|||++||++.|+.++++.
T Consensus 150 glVVDiG~~~t~v~PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~ 229 (375)
T PTZ00452 150 GLVVDSGEGVTHCVPVFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRI 229 (375)
T ss_pred eeeecCCCCcceEEEEECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999988876654 34678999999999999998877654
Q ss_pred HHhcCCCCceeEeeeCCCCcccccccccChhhHhhhhccCCCCCCCCCccccccchhHHHHHHHhhhhccCCccEEEccC
Q 013888 231 ARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTN 310 (434)
Q Consensus 231 ~~~~~~~~~~~~~~~lpd~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~ 310 (434)
... .+...+.|.||||. .+.++.
T Consensus 230 ~~~---~~~~~~~y~LPDg~------------------------------------------------------~i~l~~ 252 (375)
T PTZ00452 230 YKE---SNSQDSPYKLPDGN------------------------------------------------------ILTIKS 252 (375)
T ss_pred hhc---cCCcCceEECCCCC------------------------------------------------------EEEeeh
Confidence 331 12235689999998 799999
Q ss_pred ccccCCccccCCCCCCCCCCCHHHHHHHHHHhcChhhHHHhHcCeEEecCCCCCcChHHHHHHhhcccCCCCceEEEecC
Q 013888 311 ERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQ 390 (434)
Q Consensus 311 er~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~ 390 (434)
|||.+||+||+|++++.+..||+++|.++|.+||+|+|+.|++||||+||+|++|||.+||++||..++|...+++|.++
T Consensus 253 er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~ 332 (375)
T PTZ00452 253 QKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAP 332 (375)
T ss_pred HHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred CCCCccccchhhhhcCccccccceeehhHHhhcChHHHHhhcC
Q 013888 391 EDPLLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 433 (434)
Q Consensus 391 ~~~~~~~w~Gasila~l~~f~~~~Itr~ey~e~G~~~~~rk~~ 433 (434)
++|.+++|+||||+|++++|+++||||+||+|+|+++++||||
T Consensus 333 ~~r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~~i~~~k~~ 375 (375)
T PTZ00452 333 PDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSIVHRKCF 375 (375)
T ss_pred CCcceeEEECchhhcCccchhhhEeEHHHHhccCcceeeeecC
Confidence 9999999999999999999999999999999999999999997
No 2
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=2e-85 Score=646.20 Aligned_cols=358 Identities=29% Similarity=0.564 Sum_probs=329.4
Q ss_pred CeEEEEcCCcceEEeecCCCCCCeeeecCceeeCCC--------CceecCcccccccccccccceeecccCCCcccChHH
Q 013888 3 NIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSS--------KKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDL 74 (434)
Q Consensus 3 ~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~--------~~~~~g~~~~~~~~~d~~~~~~~~p~~~g~i~~~d~ 74 (434)
.+||||+||+++||||||++.|+.++||++++++.. +++++|+++. ... ....+++|+++|.|.|||.
T Consensus 13 ~~iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~~~~~~~~~~~vG~~~~--~~~--~~~~l~~Pi~~G~v~dwd~ 88 (380)
T PTZ00466 13 QPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAE--EYR--GLLKVTYPINHGIIENWND 88 (380)
T ss_pred CeEEEECCCCcEEEeeCCCCCCCEeccceeeeecCccccccCCCCCeEECchhh--hhC--cCceeCccccCCeECCHHH
Confidence 679999999999999999999999999999987643 3567898876 332 2467899999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCCCCCCcEE
Q 013888 75 QRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSL 154 (434)
Q Consensus 75 ~e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~~tgl 154 (434)
+|.+|+|+| +.|+++|+++|||++|++++++..|++++|+|||.|++|+++++++++||+| ++| ++||+
T Consensus 89 ~e~iw~~~f-~~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~------a~g----~~tgl 157 (380)
T PTZ00466 89 MENIWIHVY-NSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLY------SCG----KTNGT 157 (380)
T ss_pred HHHHHHHHH-hhcccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHH------hcC----CceEE
Confidence 999999999 5799999999999999999999999999999999999999999999999999 888 99999
Q ss_pred EEecCCCceEEEeccCceecccccEEecccHHHHHHHHHHHHhhcCCCC--CChHHHHHHHHhhcccccccHHHHHHHHH
Q 013888 155 VVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINV--MDETFIIDDVKEKLCFVSLDVARDLQIAR 232 (434)
Q Consensus 155 VVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~--~~~~~~~~~iKe~~c~v~~~~~~~~~~~~ 232 (434)
|||+|++.|+|+||+||+++.+++.++++||++++++|+++|.+++..+ ..+.++++++||++|||+.|+.++.+..
T Consensus 158 VVD~G~~~t~v~PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~- 236 (380)
T PTZ00466 158 VLDCGDGVCHCVSIYEGYSITNTITRTDVAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSFNMNKEKNSS- 236 (380)
T ss_pred EEeCCCCceEEEEEECCEEeecceeEecCchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCeEecCChHHHHhhc-
Confidence 9999999999999999999999999999999999999999998876433 3456789999999999999987765432
Q ss_pred hcCCCCceeEeeeCCCCcccccccccChhhHhhhhccCCCCCCCCCccccccchhHHHHHHHhhhhccCCccEEEccCcc
Q 013888 233 KRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNER 312 (434)
Q Consensus 233 ~~~~~~~~~~~~~lpd~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~er 312 (434)
........|.||||. .+.++.||
T Consensus 237 ---~~~~~~~~y~LPdg~------------------------------------------------------~i~l~~er 259 (380)
T PTZ00466 237 ---EKALTTLPYILPDGS------------------------------------------------------QILIGSER 259 (380)
T ss_pred ---cccccceeEECCCCc------------------------------------------------------EEEEchHH
Confidence 112234689999998 78999999
Q ss_pred ccCCccccCCCCCCCCCCCHHHHHHHHHHhcChhhHHHhHcCeEEecCCCCCcChHHHHHHhhcccCCCCceEEEecCCC
Q 013888 313 FLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQED 392 (434)
Q Consensus 313 ~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~~ 392 (434)
|++||+||+|+++|.+..||+++|.++|.+||+|+|+.|++||||+||+|++|||.+||++||..+.|...+++|..+++
T Consensus 260 ~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~ 339 (380)
T PTZ00466 260 YRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPE 339 (380)
T ss_pred hcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred CCccccchhhhhcCccccccceeehhHHhhcChHHHHhhcC
Q 013888 393 PLLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 433 (434)
Q Consensus 393 ~~~~~w~Gasila~l~~f~~~~Itr~ey~e~G~~~~~rk~~ 433 (434)
|.+++|+||||+|++++|+++||||+||+|+|+++++||||
T Consensus 340 r~~~aW~GgSilasl~~f~~~~itk~eYeE~G~~iv~rk~~ 380 (380)
T PTZ00466 340 RKFSTFIGGSILASLATFKKIWISKQEFDEYGSVILHRKTF 380 (380)
T ss_pred CceeEEECchhhcCccchhhhEeEHHHHhhhCcHhheeecC
Confidence 99999999999999999999999999999999999999996
No 3
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=1.5e-86 Score=632.03 Aligned_cols=357 Identities=37% Similarity=0.662 Sum_probs=328.5
Q ss_pred CCCeEEEEcCCcceEEeecCCCCCCeeeecCceeeCCC--------CceecCcccccccccccccceeecccCCCcccCh
Q 013888 1 MSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSS--------KKFIHPSPTAASATEDLTSAAVRRPIDRGYLINS 72 (434)
Q Consensus 1 ~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~--------~~~~~g~~~~~~~~~d~~~~~~~~p~~~g~i~~~ 72 (434)
|..+||||+||..+|+|||||+.|+.+|||++++++.. ++.++|+++. ..+ .+++|++||+|.||
T Consensus 6 ~~~~vViDnGsg~~KaGfag~~~P~~v~ps~vg~~~~~~~~~~~~~~~~~vg~~a~--~~~-----~l~~Pie~Giv~~w 78 (372)
T KOG0676|consen 6 DIQAVVIDNGSGFVKAGFAGDDAPRAVFPSIVGRPRHQGVMAGMTQKDTYVGDEAE--SKR-----TLKYPIERGIVTDW 78 (372)
T ss_pred CcceEEEECCCceeecccCCCCCCceecceeccccccccccccccccccccchhhh--ccc-----cccCccccccccch
Confidence 35799999999999999999999999999999986542 3567788886 222 67999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCCCCCCc
Q 013888 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQC 152 (434)
Q Consensus 73 d~~e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~~t 152 (434)
|+++.+|.|+|.+.|.++|+++|||+||++++|+..||+++|+|||.|++|++++..++++ | ++| ++|
T Consensus 79 d~me~iw~~if~~~L~~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qavl--y------a~g----~tt 146 (372)
T KOG0676|consen 79 DDMEKIWHHLFYSELLVAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQAVL--Y------ASG----RTT 146 (372)
T ss_pred HHHHHHHHHHHHHhhccCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHHHH--H------HcC----Cee
Confidence 9999999999988999999999999999999999999999999999999999999776666 7 888 999
Q ss_pred EEEEecCCCceEEEeccCceecccccEEecccHHHHHHHHHHHHhhcCCCC--CChHHHHHHHHhhcccccccHHHHHHH
Q 013888 153 SLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINV--MDETFIIDDVKEKLCFVSLDVARDLQI 230 (434)
Q Consensus 153 glVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~--~~~~~~~~~iKe~~c~v~~~~~~~~~~ 230 (434)
|+|||+|++.|+++||+||+++++++.++++||++++++|+..|.++++.+ ..+.++++++||++||++.|+.+++..
T Consensus 147 G~VvD~G~gvt~~vPI~eG~~lp~ai~~ldl~G~dlt~~l~~~L~~~g~s~~~~~~~eIv~diKeklCyvald~~~e~~~ 226 (372)
T KOG0676|consen 147 GLVVDSGDGVTHVVPIYEGYALPHAILRLDLAGRDLTDYLLKQLRKRGYSFTTSAEFEIVRDIKEKLCYVALDFEEEEET 226 (372)
T ss_pred EEEEEcCCCceeeeecccccccchhhheecccchhhHHHHHHHHHhcccccccccHHHHHHHhHhhhcccccccchhhhc
Confidence 999999999999999999999999999999999999999999998876554 346788999999999999999888765
Q ss_pred HHhcCCCCceeEeeeCCCCcccccccccChhhHhhhhccCCCCCCCCCccccccchhHHHHHHHhhhhccCCccEEEccC
Q 013888 231 ARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTN 310 (434)
Q Consensus 231 ~~~~~~~~~~~~~~~lpd~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~ 310 (434)
.. ........|.|||++ .+.+++
T Consensus 227 -~~--~~~~l~~~y~lPDg~------------------------------------------------------~i~i~~ 249 (372)
T KOG0676|consen 227 -AN--TSSSLESSYELPDGQ------------------------------------------------------KITIGN 249 (372)
T ss_pred -cc--ccccccccccCCCCC------------------------------------------------------EEecCC
Confidence 21 223345568899988 699999
Q ss_pred ccccCCccccCCCCCCCCCCCHHHHHHHHHHhcChhhHHHhHcCeEEecCCCCCcChHHHHHHhhcccCCCCceEEEecC
Q 013888 311 ERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQ 390 (434)
Q Consensus 311 er~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~ 390 (434)
|||++||+||+|+.+|.+..||++++.++|.+||+|+|+.|+.||+|+||++++|||.+||++||+.+.|..++++|+++
T Consensus 250 erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~P~~~~ikv~~p 329 (372)
T KOG0676|consen 250 ERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQKELQALAPSTIKIKVIAP 329 (372)
T ss_pred cccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHHHHhhcCCCCcceEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccchhhhhcCccccccceeehhHHhhcChHHHHhhcC
Q 013888 391 EDPLLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 433 (434)
Q Consensus 391 ~~~~~~~w~Gasila~l~~f~~~~Itr~ey~e~G~~~~~rk~~ 433 (434)
+++.+++|+||||+|++++|+++||||+||+|+|+++++||||
T Consensus 330 p~r~~s~WlGgSIlaslstfq~~witk~eY~e~g~~~~~rk~f 372 (372)
T KOG0676|consen 330 PERKYSAWLGGSILASLSTFQQMWITKEEYEEHGPSIIHRKCF 372 (372)
T ss_pred cccccceecCceeEeecchHhhccccHHHHhhhCCceeeeccC
Confidence 9999999999999999999999999999999999999999998
No 4
>PTZ00281 actin; Provisional
Probab=100.00 E-value=4.2e-85 Score=645.27 Aligned_cols=361 Identities=33% Similarity=0.615 Sum_probs=332.5
Q ss_pred CCeEEEEcCCcceEEeecCCCCCCeeeecCceeeCCC--------CceecCcccccccccccccceeecccCCCcccChH
Q 013888 2 SNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSS--------KKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSD 73 (434)
Q Consensus 2 ~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~--------~~~~~g~~~~~~~~~d~~~~~~~~p~~~g~i~~~d 73 (434)
.++||||+||+++|+|||||+.|+.++||++++++.. .++++|+++. .. ...+.+++|+++|.|.|||
T Consensus 6 ~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~--~~--~~~~~l~~Pi~~G~i~dwd 81 (376)
T PTZ00281 6 VQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQ--SK--RGILTLKYPIEHGIVTNWD 81 (376)
T ss_pred CCeEEEECCCCeEEEeeCCCCCCCeeccccceeecCcccccCcccCCeEECchhh--cc--ccCcEEeccCcCCEEcCHH
Confidence 4689999999999999999999999999999986543 2467888865 22 2357899999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCCCCCCcE
Q 013888 74 LQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCS 153 (434)
Q Consensus 74 ~~e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~~tg 153 (434)
.++.+|+|+|.+.|.++|+++||+++||+++++..|++++|+|||.|++|+++++++++|++| ++| ++||
T Consensus 82 ~~e~l~~~~f~~~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~y------a~g----~~tg 151 (376)
T PTZ00281 82 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLY------ASG----RTTG 151 (376)
T ss_pred HHHHHHHHHHHhhccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHH------hcC----CceE
Confidence 999999999988899999999999999999999999999999999999999999999999999 888 9999
Q ss_pred EEEecCCCceEEEeccCceecccccEEecccHHHHHHHHHHHHhhcCCCC--CChHHHHHHHHhhcccccccHHHHHHHH
Q 013888 154 LVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINV--MDETFIIDDVKEKLCFVSLDVARDLQIA 231 (434)
Q Consensus 154 lVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~--~~~~~~~~~iKe~~c~v~~~~~~~~~~~ 231 (434)
||||+|++.|+|+||+||+++.+++.++++||++++++|+++|..+++++ ..+..++++|||++|||+.++..+++..
T Consensus 152 lVVDiG~~~t~v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~ 231 (376)
T PTZ00281 152 IVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTA 231 (376)
T ss_pred EEEECCCceEEEEEEEecccchhheeeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcEEecCCchHHHHhh
Confidence 99999999999999999999999999999999999999999998887654 2356789999999999999987776543
Q ss_pred HhcCCCCceeEeeeCCCCcccccccccChhhHhhhhccCCCCCCCCCccccccchhHHHHHHHhhhhccCCccEEEccCc
Q 013888 232 RKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNE 311 (434)
Q Consensus 232 ~~~~~~~~~~~~~~lpd~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~e 311 (434)
. ......+.|.||||. .+.++.|
T Consensus 232 ~---~~~~~~~~y~LPdg~------------------------------------------------------~i~i~~e 254 (376)
T PTZ00281 232 A---SSSALEKSYELPDGQ------------------------------------------------------VITIGNE 254 (376)
T ss_pred h---cCcccceeEECCCCC------------------------------------------------------EEEeeHH
Confidence 2 122345689999988 7999999
Q ss_pred cccCCccccCCCCCCCCCCCHHHHHHHHHHhcChhhHHHhHcCeEEecCCCCCcChHHHHHHhhcccCCCCceEEEecCC
Q 013888 312 RFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQE 391 (434)
Q Consensus 312 r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~ 391 (434)
||.+||+||+|+.++.+..||+++|.++|.+||+|+|+.|++||||+||+|++|||.+||++||+.+.|...+++|..++
T Consensus 255 r~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~ 334 (376)
T PTZ00281 255 RFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPP 334 (376)
T ss_pred HeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred CCCccccchhhhhcCccccccceeehhHHhhcChHHHHhhcC
Q 013888 392 DPLLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 433 (434)
Q Consensus 392 ~~~~~~w~Gasila~l~~f~~~~Itr~ey~e~G~~~~~rk~~ 433 (434)
+|.+++|+||||+|++++|+++||||+||+|+|+++++||||
T Consensus 335 ~r~~~aW~Ggsilasl~~f~~~~vtk~eY~E~G~~~~~~k~~ 376 (376)
T PTZ00281 335 ERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376 (376)
T ss_pred CCceeEEECcccccCcccHhhceeeHHHHhhhCchheeeecC
Confidence 999999999999999999999999999999999999999996
No 5
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=8.9e-83 Score=629.65 Aligned_cols=362 Identities=31% Similarity=0.609 Sum_probs=331.9
Q ss_pred CCeEEEEcCCcceEEeecCCCCCCeeeecCceeeCC--------CCceecCcccccccccccccceeecccCCCcccChH
Q 013888 2 SNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLS--------SKKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSD 73 (434)
Q Consensus 2 ~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~--------~~~~~~g~~~~~~~~~d~~~~~~~~p~~~g~i~~~d 73 (434)
.++||||+||+++|+||||++.|++++||++++++. .+..++|+++. ... ....+++|+++|.|.|||
T Consensus 6 ~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~--~~~--~~~~l~~Pi~~G~i~d~d 81 (378)
T PTZ00004 6 TNAAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQ--DKR--GILTLKYPIEHGIVTNWD 81 (378)
T ss_pred CCeEEEECCCCeEEEeeCCCCCCCEEccceeEEecccccccCcCCCceEECchhh--ccc--ccceEcccCcCCEEcCHH
Confidence 478999999999999999999999999999998764 23567898875 332 247889999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCCCCCCcE
Q 013888 74 LQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCS 153 (434)
Q Consensus 74 ~~e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~~tg 153 (434)
.++.+|+|+|.+.|+++|.++|||+++++++++..|++++|+|||.|++|+++++++++|++| ++| ++||
T Consensus 82 ~~e~i~~~~~~~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~y------a~g----~~tg 151 (378)
T PTZ00004 82 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLY------ASG----RTTG 151 (378)
T ss_pred HHHHHHHHHHHhhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHH------hcC----CceE
Confidence 999999999988899999999999999999999999999999999999999999999999999 888 9999
Q ss_pred EEEecCCCceEEEeccCceecccccEEecccHHHHHHHHHHHHhhcCCCCC--ChHHHHHHHHhhcccccccHHHHHHHH
Q 013888 154 LVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVM--DETFIIDDVKEKLCFVSLDVARDLQIA 231 (434)
Q Consensus 154 lVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~--~~~~~~~~iKe~~c~v~~~~~~~~~~~ 231 (434)
||||+|++.|+|+||+||+++.+++.++++||++++++|+++|..+++.+. .+..+++++||++|||+.|+.++.+..
T Consensus 152 lVVDiG~~~t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~ 231 (378)
T PTZ00004 152 IVLDSGDGVSHTVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALDFDEEMGNS 231 (378)
T ss_pred EEEECCCCcEEEEEEECCEEeecceeeecccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcceeecCCHHHHHhhh
Confidence 999999999999999999999999999999999999999999998876543 346789999999999999998776543
Q ss_pred HhcCCCCceeEeeeCCCCcccccccccChhhHhhhhccCCCCCCCCCccccccchhHHHHHHHhhhhccCCccEEEccCc
Q 013888 232 RKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNE 311 (434)
Q Consensus 232 ~~~~~~~~~~~~~~lpd~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~e 311 (434)
.. ......+.|.||||. .+.++.|
T Consensus 232 ~~--~~~~~~~~y~lPdg~------------------------------------------------------~i~l~~e 255 (378)
T PTZ00004 232 AG--SSDKYEESYELPDGT------------------------------------------------------IITVGSE 255 (378)
T ss_pred hc--CccccceEEECCCCC------------------------------------------------------EEEEcHH
Confidence 21 112235689999998 7899999
Q ss_pred cccCCccccCCCCCCCC-CCCHHHHHHHHHHhcChhhHHHhHcCeEEecCCCCCcChHHHHHHhhcccCCCCceEEEecC
Q 013888 312 RFLVPEMIFQPADLGMN-QAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQ 390 (434)
Q Consensus 312 r~~~~E~lF~p~~~~~~-~~~l~~~I~~~i~~~~~d~r~~l~~nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~ 390 (434)
||.+||+||+|+.++.+ ..||+++|.++|.+||+|+|+.|++||+|+||+|++|||.+||++||+.++|...+++|..+
T Consensus 256 r~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~ 335 (378)
T PTZ00004 256 RFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAP 335 (378)
T ss_pred HeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecC
Confidence 99999999999998888 89999999999999999999999999999999999999999999999999998889999999
Q ss_pred CCCCccccchhhhhcCccccccceeehhHHhhcChHHHHhhcC
Q 013888 391 EDPLLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 433 (434)
Q Consensus 391 ~~~~~~~w~Gasila~l~~f~~~~Itr~ey~e~G~~~~~rk~~ 433 (434)
++|.+++|+||||+|++++|+++||||+||+|+|++++.||||
T Consensus 336 ~~~~~~aW~Ggsilas~~~f~~~~vtk~eYeE~G~~~~~rk~~ 378 (378)
T PTZ00004 336 PERKYSVWIGGSILSSLPTFQQMWVTKEEYDESGPSIVHRKCF 378 (378)
T ss_pred CCCceeEEECcccccCccchhhhEeEHHHHhhhCcceEEeecC
Confidence 9999999999999999999999999999999999999999997
No 6
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=100.00 E-value=5.3e-81 Score=576.26 Aligned_cols=362 Identities=26% Similarity=0.462 Sum_probs=304.4
Q ss_pred CeEEEEcCCcceEEeecCCCCCCeeeecCceeeC-------CCCceecCcccccccccccccceeecccCCCcccChHHH
Q 013888 3 NIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPL-------SSKKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQ 75 (434)
Q Consensus 3 ~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~-------~~~~~~~g~~~~~~~~~d~~~~~~~~p~~~g~i~~~d~~ 75 (434)
++||||+||+++||||||++.|++++||+++... ..+.+++++++. ......+++..|+++|.|.|||.+
T Consensus 12 ~alViDpGS~~traGyaged~Pk~ilPS~~G~~tk~~~d~~~~~~~y~~~~ai---~~pr~gmEv~~~i~nGlv~dWD~~ 88 (426)
T KOG0679|consen 12 SALVIDPGSHTTRAGYAGEDSPKAILPSVYGKVTKTDGDAEDKKGYYVDENAI---HVPRPGMEVKTPIKNGLVEDWDLF 88 (426)
T ss_pred ceEEEeCCCceEeccccCCCCccccccceeeeeecccCccccccceEeechhc---cCCCCCCeeccchhcCCcccHHHH
Confidence 6899999999999999999999999999999421 123467888876 333456899999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCCCCCCcEEE
Q 013888 76 RDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLV 155 (434)
Q Consensus 76 e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~~tglV 155 (434)
+.+|+|+|.+.|.++|.+||+|++||++++++.|++++|+|||.|+||++|++++++|++| |+| +.||||
T Consensus 89 ~~~w~~~~~~~Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AF------A~G----rstalV 158 (426)
T KOG0679|consen 89 EMQWRYAYKNQLKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAF------ANG----RSTALV 158 (426)
T ss_pred HHHHHHHHhhhhhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHH------hcC----CCceEE
Confidence 9999999999999999999999999999999999999999999999999999999999999 999 999999
Q ss_pred EecCCCceEEEeccCceecccccEEecccHHHHHHHHHHHHhhcCCCCCChHH-------------------HHHHHHhh
Q 013888 156 VDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETF-------------------IIDDVKEK 216 (434)
Q Consensus 156 VDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~-------------------~~~~iKe~ 216 (434)
||||++.|+|+||+||+++.+++.+.++||++|+..++++|+.+++++.+-+. ..+++++.
T Consensus 159 vDiGa~~~svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~~~~iei~P~y~ia~k~~v~~g~~an~~~~~~~~d~tes 238 (426)
T KOG0679|consen 159 VDIGATHTSVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLEPKNIEIIPMYNIASKEPVREGYPANAVLRVSIPDLTES 238 (426)
T ss_pred EEecCCCceeeeeecceEeeeeeEecccchHHHHHHHHHHHhhcCcccCcHHHhhhcccccccCcchhhhcCChhHHHHH
Confidence 99999999999999999999999999999999999999999987765432111 12222333
Q ss_pred cccccc-----cHHHHHHHHHh-----cCCCCceeEeeeCCCCcccccccccChhhHhhhhccCCCCCCCCCccccccch
Q 013888 217 LCFVSL-----DVARDLQIARK-----RGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDR 286 (434)
Q Consensus 217 ~c~v~~-----~~~~~~~~~~~-----~~~~~~~~~~~~lpd~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (434)
.|+... ++.+++..... ....+...+.|.+|||.
T Consensus 239 ~~~y~~~~v~~e~ke~v~qv~dtp~de~~~~~i~~~~~efP~g~------------------------------------ 282 (426)
T KOG0679|consen 239 YHNYMEQRVYQEFKESVLQVSDTPFDEEVAAQIPTKHFEFPDGY------------------------------------ 282 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCcccccccCCCccccCCCCc------------------------------------
Confidence 222211 01111000000 00111233455566555
Q ss_pred hHHHHHHHhhhhccCCccEEEccCccccCCccccCCCCCCC------------CCCCHHHHHHHHHHhcChhhHHHhHcC
Q 013888 287 TEVMEEARDRKRADLAKNEFDLTNERFLVPEMIFQPADLGM------------NQAGLAECIVRAVNSCHPYLHSVLYES 354 (434)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~i~l~~er~~~~E~lF~p~~~~~------------~~~~l~~~I~~~i~~~~~d~r~~l~~n 354 (434)
+.+++.|||++||.||+|+.+.. ...|+++++..||..||+|+|..|++|
T Consensus 283 ------------------~~~~G~er~ripe~lF~Ps~v~~~s~~~~~~~~~n~~lG~~~lv~sSi~~cDvdiR~~L~~n 344 (426)
T KOG0679|consen 283 ------------------TLDFGAERFRIPEYLFKPSLVKSSSKEAGATSHINTMLGLPHLVYSSINMCDVDIRSSLLGN 344 (426)
T ss_pred ------------------ccccCcceeecchhhcCcchhccccccccCCCCCccccCchHHHHhhhccChHHHHHHhhcc
Confidence 68889999999999999986521 235899999999999999999999999
Q ss_pred eEEecCCCCCcChHHHHHHhhcccCCCCceEEEecCC---CCCccccchhhhhcCccccccceeehhHHhhcCh-HHHHh
Q 013888 355 IILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQE---DPLLGVWRGGSLLASSPDFQAMCVTKAEYEENGS-ARCRR 430 (434)
Q Consensus 355 IiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~---~~~~~~w~Gasila~l~~f~~~~Itr~ey~e~G~-~~~~r 430 (434)
||||||+|+|+||.+||.+||..+.|.+ ++++++.. +|++++|+||||||||++|+++||+|+||||+|. +.++|
T Consensus 345 VivtGGtSliqG~s~RL~~ELs~~~P~s-rlki~as~~t~eR~~~~WlGGSILASLgtFqq~WiSKqEYEE~G~d~~ve~ 423 (426)
T KOG0679|consen 345 VIVTGGTSLIQGFSERLNKELSKRAPSS-RLKIIASGHTVERRFQSWLGGSILASLGTFQQLWISKQEYEEVGKDQLVER 423 (426)
T ss_pred EEEecCcchhhhHHHHHHHHHHHhCCcc-eEEEEecCceeeehhhhhhhhHHHhccccHHHHhhhHHHHHHhhhHHHHhh
Confidence 9999999999999999999999999986 99999875 7999999999999999999999999999999999 88999
Q ss_pred hc
Q 013888 431 RF 432 (434)
Q Consensus 431 k~ 432 (434)
||
T Consensus 424 rc 425 (426)
T KOG0679|consen 424 RC 425 (426)
T ss_pred cC
Confidence 98
No 7
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=1.1e-79 Score=615.08 Aligned_cols=365 Identities=32% Similarity=0.550 Sum_probs=323.3
Q ss_pred CCeEEEEcCCcceEEeecCCCCCCeeeecCceeeCCC-----------CceecCcccccccccccccceeecccCCCccc
Q 013888 2 SNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSS-----------KKFIHPSPTAASATEDLTSAAVRRPIDRGYLI 70 (434)
Q Consensus 2 ~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~-----------~~~~~g~~~~~~~~~d~~~~~~~~p~~~g~i~ 70 (434)
.++||||+||+++||||||++.|++++||++++++.. .++++|+++. .. ...+.+++|+++|.|.
T Consensus 4 ~~~iViD~GS~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~--~~--~~~~~l~~Pi~~G~I~ 79 (414)
T PTZ00280 4 LPVVVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEAL--AA--SKSYTLTYPMKHGIVE 79 (414)
T ss_pred CCeEEEECCCCceEeeeCCCCCCCEEecceeEEeccccccccccccccCCEEEcchhh--hC--cCCcEEecCccCCEeC
Confidence 5789999999999999999999999999999986542 1467899876 32 2458899999999999
Q ss_pred ChHHHHHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCC------
Q 013888 71 NSDLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPY------ 144 (434)
Q Consensus 71 ~~d~~e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~------ 144 (434)
|||.+|.+|+|+|.+.|+++|.++|+|+++|++++...|++++|+|||.|++|+++++.+++||+| ++
T Consensus 80 dwd~~e~l~~~~~~~~L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lsly------a~~~~~~~ 153 (414)
T PTZ00280 80 DWDLMEKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALR------ASWTSKKA 153 (414)
T ss_pred CHHHHHHHHHHHHHHhhccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHh------hhcccccc
Confidence 999999999999988899999999999999999999999999999999999999999999999999 66
Q ss_pred ----CCCCCCCcEEEEecCCCceEEEeccCceecccccEEecccHHHHHHHHHHHHhhcCCCCCC--hHHHHHHHHhhcc
Q 013888 145 ----GLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMD--ETFIIDDVKEKLC 218 (434)
Q Consensus 145 ----g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~--~~~~~~~iKe~~c 218 (434)
| ++||||||+|++.|+|+||+||+++.+++.++++||++++++|.++|.+++.++.. ...++++|||++|
T Consensus 154 ~~~~g----~~tglVVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c 229 (414)
T PTZ00280 154 KELGG----TLTGTVIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEKYC 229 (414)
T ss_pred cccCC----ceeEEEEECCCCceEEEEEECCEEcccceEEecCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcC
Confidence 6 89999999999999999999999999999999999999999999999988766543 3678999999999
Q ss_pred cccccHHHHHHHHHhcCCCCceeEeeeCCCCcccccccccChhhHhhhhccCCCCCCCCCccccccchhHHHHHHHhhhh
Q 013888 219 FVSLDVARDLQIARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKR 298 (434)
Q Consensus 219 ~v~~~~~~~~~~~~~~~~~~~~~~~~~lpd~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (434)
|++.|+.++.+..... .......|.+||...
T Consensus 230 ~v~~d~~~e~~~~~~~--~~~~~~~~~~~d~~~----------------------------------------------- 260 (414)
T PTZ00280 230 YVAPDIAKEFEKYDSD--PKNHFKKYTAVNSVT----------------------------------------------- 260 (414)
T ss_pred cccCcHHHHHHHhhcC--cccccceEECCCCCC-----------------------------------------------
Confidence 9999988777643211 111234577776431
Q ss_pred ccCCccEEEccCccccCCccccCCCCCCCC-CCCHHHHHHHHHHhcChhhHHHhHcCeEEecCCCCCcChHHHHHHhhcc
Q 013888 299 ADLAKNEFDLTNERFLVPEMIFQPADLGMN-QAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRP 377 (434)
Q Consensus 299 ~~~~~~~i~l~~er~~~~E~lF~p~~~~~~-~~~l~~~I~~~i~~~~~d~r~~l~~nIiltGG~s~~~G~~~RL~~eL~~ 377 (434)
+....+.++.|||.+||+||+|+.++.+ ..||+++|.++|++||+|+|+.|++||+|+||+|++|||.+||++||++
T Consensus 261 --g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~~ 338 (414)
T PTZ00280 261 --KKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRK 338 (414)
T ss_pred --CCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHHH
Confidence 0122689999999999999999987655 4599999999999999999999999999999999999999999999999
Q ss_pred cC----------------CCCceEEEecCCCCCccccchhhhhcCccccccceeehhHHhhcChHHHHhh
Q 013888 378 LV----------------PDDYQVKITTQEDPLLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRR 431 (434)
Q Consensus 378 ~~----------------~~~~~v~v~~~~~~~~~~w~Gasila~l~~f~~~~Itr~ey~e~G~~~~~rk 431 (434)
++ |..++++|..++++.+++|+||||+|++++|+++||||+||+|+|+++++||
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~GgSilas~~~f~~~~itk~eY~E~G~~i~~~~ 408 (414)
T PTZ00280 339 RVDRRLKKAEELSGGKLKPIPIDVNVVSHPRQRYAVWYGGSMLASSPEFEKVCHTKAEYDEYGPSICRYN 408 (414)
T ss_pred hccccccccccccccccCCCCceEEEecCCccceeEEEChhhcccCcchhhheEEHHHHhccChHheeec
Confidence 86 3456899999889999999999999999999999999999999999999887
No 8
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=100.00 E-value=6.2e-78 Score=543.00 Aligned_cols=393 Identities=37% Similarity=0.713 Sum_probs=356.2
Q ss_pred CCeEEEEcCCcceEEeecCCCCCCeeeecCceeeCCCCc-eecCcccccccccccccceeecccCCCcccChHHHHHHHH
Q 013888 2 SNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKK-FIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDIWA 80 (434)
Q Consensus 2 ~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~~~-~~~g~~~~~~~~~d~~~~~~~~p~~~g~i~~~d~~e~il~ 80 (434)
.++||||+|++++|+|+++++.|. ++|+|+.+.+.+++ .++|++.. +++|.+.+.+++|+++|.++||+...++|+
T Consensus 3 ~~tiVlDNGay~~KiG~s~~~~p~-~vpNcl~kaK~~~rr~f~~nei~--ec~D~ssL~y~rp~erGyLvnW~tq~~vWD 79 (400)
T KOG0680|consen 3 TTTIVLDNGAYNIKIGPSTNKKPF-VVPNCLAKAKFGRRRSFLANEID--ECKDISSLFYRRPHERGYLVNWDTQSQVWD 79 (400)
T ss_pred CceEEEcCCceeEEeccCCCCCce-eccchhhhcccccchhhhhhhhh--hccCccceEEeehhhcceeEeehhHHHHHH
Confidence 368999999999999999999995 67999999887654 78899988 899999999999999999999999999999
Q ss_pred HHhhcc-CCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccc-cccCCCCCCCCCCcEEEEec
Q 013888 81 HLFSSL-LHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYE-ASRRPYGLLSETQCSLVVDC 158 (434)
Q Consensus 81 ~~~~~~-L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~-~~~~~~g~~~~~~tglVVDi 158 (434)
++|.+. ++++.+++.+++|+|.++-++..+.+.|++||.|+|.+++-...+.++++.. ..+..........+++|||.
T Consensus 80 y~f~~~~~~~~~~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDs 159 (400)
T KOG0680|consen 80 YCFGNPGFDVEGKDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDS 159 (400)
T ss_pred HHhcCCCcCcccCcceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccceEEEEeC
Confidence 999853 3356789999999999999999999999999999999999999999999852 11101000011348899999
Q ss_pred CCCceEEEeccCceecccccEEecccHHHHHHHHHHHHhhcCCCCCChHHHHHHHHhhcccccccHHHHHHHHHhcCCCC
Q 013888 159 GFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKDN 238 (434)
Q Consensus 159 G~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~c~v~~~~~~~~~~~~~~~~~~ 238 (434)
|++.|+|+||.+|.+..++++|+++||+.||++|++.+..+.++++.+..+++++||..|||++|+.++++.++.+...+
T Consensus 160 GysfThIip~v~g~~~~qaV~RiDvGGK~LTn~LKE~iSyR~lNvmdET~vVNeiKEdvcfVSqnF~~~m~~~~~k~~~~ 239 (400)
T KOG0680|consen 160 GYSFTHIIPVVKGIPYYQAVKRIDVGGKALTNLLKETISYRHLNVMDETYVVNEIKEDVCFVSQNFKEDMDIAKTKFQEN 239 (400)
T ss_pred CCceEEEehhhcCcchhhceEEeecchHHHHHHHHHHhhhhhhcccchhhhhhhhhhheEEechhhHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877777
Q ss_pred ceeEeeeCCCCcccccccccC-hhhHhhhhccCCCCCCCCCccccccchhHHHHHHHhhhhccCCccEEEccCccccCCc
Q 013888 239 LLRCTYVLPDGVTHTKGFVKD-PDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLVPE 317 (434)
Q Consensus 239 ~~~~~~~lpd~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~er~~~~E 317 (434)
+....|+|||.++...|+++. +. ++..+.+.|.|++|||.+||
T Consensus 240 ~~~i~YvLPDF~T~k~Gyvr~~~v------------------------------------k~~~d~qii~L~nErF~IPE 283 (400)
T KOG0680|consen 240 KVMIDYVLPDFSTSKRGYVRNEDV------------------------------------KLPEDEQIITLTNERFTIPE 283 (400)
T ss_pred eeEEEEecCCcccccceeEecCCC------------------------------------CCCCCcceeeecccccccch
Confidence 788999999999999999984 11 01113358999999999999
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHHhcChhhHHHhHcCeEEecCCCCCcChHHHHHHhhcccCCCCceEEEecCCCCCccc
Q 013888 318 MIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGV 397 (434)
Q Consensus 318 ~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~~~~~~~ 397 (434)
+||+|++++++++||+++|.+||..||.++|+.|+.||+++||++++|||.+||..||+.++|.++.++|..+.||..-+
T Consensus 284 ilF~Psdi~I~q~GIpEAV~esl~~~Pe~~~p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l~P~d~~v~V~~p~dp~~~~ 363 (400)
T KOG0680|consen 284 ILFSPSDIGIQQPGIPEAVLESLSMLPEEVRPLLLENIVCIGGNSNFPGFRQRLARELRSLLPADWEVSVSVPEDPITFA 363 (400)
T ss_pred hhcChhhcCcccCCchHHHHHHHHhCHHHHHHHHHhcEEEecCccCCcchHHHHHHHHHhhCCccceEEEecCCCcceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhcCccccccceeehhHHhhcChHHHHhhcC
Q 013888 398 WRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 433 (434)
Q Consensus 398 w~Gasila~l~~f~~~~Itr~ey~e~G~~~~~rk~~ 433 (434)
|.||+-+|.++.|...||||+||+|+|++++.+|+|
T Consensus 364 W~~g~~~~~~~~~~~~~itR~dy~E~G~~~~~~~~~ 399 (400)
T KOG0680|consen 364 WEGGSEFAKTDSFEKAVITREDYEEHGPSWCTKKRF 399 (400)
T ss_pred ehhccccccCcchhcceecHhhHhhcCchhhhhhcc
Confidence 999999999999999999999999999999999987
No 9
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=5.8e-78 Score=601.77 Aligned_cols=360 Identities=37% Similarity=0.660 Sum_probs=315.6
Q ss_pred CCeEEEEcCCcceEEeecCCCCCCeeeecCceeeCCCC---ceecCcccccccccccccceeecccCCCcccChHHHHHH
Q 013888 2 SNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSK---KFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDI 78 (434)
Q Consensus 2 ~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~~---~~~~g~~~~~~~~~d~~~~~~~~p~~~g~i~~~d~~e~i 78 (434)
.++||||+||+++|||||||+.|+.++||+++++.... ++++|++.. . +.....+++|+++|.+.|||.++.+
T Consensus 4 ~~~vViD~Gs~~~k~G~age~~P~~v~ps~~~~~~~~~~~~~~~~g~~~~--~--~~~~~~~~~p~~~g~i~~~~~~e~i 79 (393)
T PF00022_consen 4 NKPVVIDNGSSTIKAGFAGEDLPRVVIPSVVGRPRDKNSSNDYYVGDEAL--S--PRSNLELRSPIENGVIVDWDALEEI 79 (393)
T ss_dssp SSEEEEEECSSEEEEEETTSSS-SEEEESEEEEESSSSSSSSCEETHHHH--H--TGTGEEEEESEETTEESSHHHHHHH
T ss_pred CCEEEEECCCceEEEEECCCCCCCCcCCCccccccccccceeEEeecccc--c--chhheeeeeeccccccccccccccc
Confidence 57999999999999999999999999999999887765 577888754 2 3456889999999999999999999
Q ss_pred HHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCCCCCCcEEEEec
Q 013888 79 WAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDC 158 (434)
Q Consensus 79 l~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~~tglVVDi 158 (434)
|+|+|.+.|+++++++||||++|+++++..|++++|++||.|++|+++++++++|++| ++| ..||||||+
T Consensus 80 ~~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~------~~g----~~tglVVD~ 149 (393)
T PF00022_consen 80 WDYIFSNLLKVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALY------ASG----RTTGLVVDI 149 (393)
T ss_dssp HHHHHHTTT-SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHH------HTT----BSSEEEEEE
T ss_pred cccccccccccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeeeccccccc------ccc----ccccccccc
Confidence 9999998899999999999999999999999999999999999999999999999999 888 999999999
Q ss_pred CCCceEEEeccCceecccccEEecccHHHHHHHHHHHHhhcCCCC-------------------CChHHHHHHHHhhccc
Q 013888 159 GFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINV-------------------MDETFIIDDVKEKLCF 219 (434)
Q Consensus 159 G~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~-------------------~~~~~~~~~iKe~~c~ 219 (434)
|++.|+|+||+||+++.+++.++++||++++++|+++|..++... ..+..+++++|+++|+
T Consensus 150 G~~~t~v~pV~dG~~~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~ 229 (393)
T PF00022_consen 150 GYSSTSVVPVVDGYVLPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCY 229 (393)
T ss_dssp SSS-EEEEEEETTEE-GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHS
T ss_pred ceeeeeeeeeeeccccccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhh
Confidence 999999999999999999999999999999999999999864321 1245689999999999
Q ss_pred ccccHHHHHHHHHhcCCCCceeEeeeCCCCcccccccccChhhHhhhhccCCCCCCCCCccccccchhHHHHHHHhhhhc
Q 013888 220 VSLDVARDLQIARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRA 299 (434)
Q Consensus 220 v~~~~~~~~~~~~~~~~~~~~~~~~~lpd~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (434)
++.+..+...... .......|.|||+.
T Consensus 230 v~~~~~~~~~~~~----~~~~~~~~~lPdg~------------------------------------------------- 256 (393)
T PF00022_consen 230 VSEDPDEEQEEQA----SENPEKSYELPDGQ------------------------------------------------- 256 (393)
T ss_dssp GGSSHHHHHHHHH----CSTTTEEEE-TTSS-------------------------------------------------
T ss_pred ccccccccccccc----ccccceeccccccc-------------------------------------------------
Confidence 9998775111111 13345779999987
Q ss_pred cCCccEEEccCccccCCccccCCCCCCCCCC-------CHHHHHHHHHHhcChhhHHHhHcCeEEecCCCCCcChHHHHH
Q 013888 300 DLAKNEFDLTNERFLVPEMIFQPADLGMNQA-------GLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLE 372 (434)
Q Consensus 300 ~~~~~~i~l~~er~~~~E~lF~p~~~~~~~~-------~l~~~I~~~i~~~~~d~r~~l~~nIiltGG~s~~~G~~~RL~ 372 (434)
.+.++.||+.+||+||+|+..+.+.. ||+++|.++|++||+|+|+.|++||+||||+|++|||.+||+
T Consensus 257 -----~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~ 331 (393)
T PF00022_consen 257 -----TIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQ 331 (393)
T ss_dssp -----EEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHH
T ss_pred -----ccccccccccccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHH
Confidence 78899999999999999998887766 999999999999999999999999999999999999999999
Q ss_pred HhhcccCCCCceEEEecCC-CCCccccchhhhhcCccccccceeehhHHhhcChHHHHhhcC
Q 013888 373 RELRPLVPDDYQVKITTQE-DPLLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 433 (434)
Q Consensus 373 ~eL~~~~~~~~~v~v~~~~-~~~~~~w~Gasila~l~~f~~~~Itr~ey~e~G~~~~~rk~~ 433 (434)
+||..+.|...+++|..++ +|.+++|+||||+|++++|+++||||+||+|+|+++++||||
T Consensus 332 ~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~~f~~~~itr~eYeE~G~~~i~rkc~ 393 (393)
T PF00022_consen 332 QELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLSSFQSFWITREEYEEYGPSIIHRKCF 393 (393)
T ss_dssp HHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSGGGGGTSEEHHHHHHHGGGGHHHHT-
T ss_pred HHhhhhhhccccceeccCchhhhhcccccceeeeccccccceeeeHHHHhCcCcceeeecCC
Confidence 9999999988899999998 999999999999999999999999999999999999999997
No 10
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=100.00 E-value=1.6e-77 Score=525.83 Aligned_cols=359 Identities=30% Similarity=0.545 Sum_probs=326.6
Q ss_pred CCeEEEEcCCcceEEeecCCCCCCeeeecCceeeCCC----------CceecCcccccccccccccceeecccCCCcccC
Q 013888 2 SNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSS----------KKFIHPSPTAASATEDLTSAAVRRPIDRGYLIN 71 (434)
Q Consensus 2 ~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~----------~~~~~g~~~~~~~~~d~~~~~~~~p~~~g~i~~ 71 (434)
+++||.|+|+.++|+||||++.|.++||+.+|+|--. ++..+|+++. ..+ +-.++.||+++|.|.|
T Consensus 4 ~~viV~DnGTGfVKcGyAg~NFP~~~FPs~VGRPilR~~e~~g~~~iKD~mvGdeas--elR--s~L~i~YPmeNGivrn 79 (389)
T KOG0677|consen 4 RNVIVCDNGTGFVKCGYAGENFPTHIFPSIVGRPILRAEEKVGNIEIKDLMVGDEAS--ELR--SLLDINYPMENGIVRN 79 (389)
T ss_pred CCeEEEeCCCceEEeccccCCCcccccchhcCchhhhhhhhccCeehhhheccchHH--HHH--HHHhcCCccccccccC
Confidence 4789999999999999999999999999999997532 3567888876 222 3468899999999999
Q ss_pred hHHHHHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCCCCCC
Q 013888 72 SDLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQ 151 (434)
Q Consensus 72 ~d~~e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~~ 151 (434)
||+|+.+|+|.|.+.|+++|.+..+++||||++|...||+++|+|||+|+|.++|++.++++++| |-| ..
T Consensus 80 wddM~h~WDytF~ekl~idp~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLY------AQG----L~ 149 (389)
T KOG0677|consen 80 WDDMEHVWDYTFGEKLKIDPTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLY------AQG----LL 149 (389)
T ss_pred hHHHHHHHHhhhhhhccCCCccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHH------Hhc----cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999 888 99
Q ss_pred cEEEEecCCCceEEEeccCceecccccEEecccHHHHHHHHHHHHhhcCCCC--CChHHHHHHHHhhcccccccHHHHHH
Q 013888 152 CSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINV--MDETFIIDDVKEKLCFVSLDVARDLQ 229 (434)
Q Consensus 152 tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~--~~~~~~~~~iKe~~c~v~~~~~~~~~ 229 (434)
||+|||.|.+.|+|+||++|+++++-..+++++|+++|+||-+||..+++.+ ..+.+.+++|||++||++-|++.+.+
T Consensus 150 tGvVvDSGDGVTHi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl~rGYafN~tADFETVR~iKEKLCYisYd~e~e~k 229 (389)
T KOG0677|consen 150 TGVVVDSGDGVTHIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLLRRGYAFNHTADFETVREIKEKLCYISYDLELEQK 229 (389)
T ss_pred ceEEEecCCCeeEEeeeecceehhhhhhhccccchhHHHHHHHHHHhhccccccccchHHHHHHHhhheeEeechhhhhH
Confidence 9999999999999999999999999999999999999999999999998654 56778999999999999999887765
Q ss_pred HHHhcCCCCceeEeeeCCCCcccccccccChhhHhhhhccCCCCCCCCCccccccchhHHHHHHHhhhhccCCccEEEcc
Q 013888 230 IARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLT 309 (434)
Q Consensus 230 ~~~~~~~~~~~~~~~~lpd~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~ 309 (434)
.+. .+.....+|.||||. .|.++
T Consensus 230 Lal---ETTvLv~~YtLPDGR------------------------------------------------------vIkvG 252 (389)
T KOG0677|consen 230 LAL---ETTVLVESYTLPDGR------------------------------------------------------VIKVG 252 (389)
T ss_pred hhh---hheeeeeeeecCCCc------------------------------------------------------EEEec
Confidence 543 234467899999998 79999
Q ss_pred CccccCCccccCCCCCCCCCCCHHHHHHHHHHhcChhhHHHhHcCeEEecCCCCCcChHHHHHHhhcccCC---------
Q 013888 310 NERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVP--------- 380 (434)
Q Consensus 310 ~er~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIiltGG~s~~~G~~~RL~~eL~~~~~--------- 380 (434)
.|||.+||+||+|.+++.+.+|+.+++..+|+..++|.|..++++|+|+||+++.||+..||++||+++.-
T Consensus 253 ~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkqlyl~rVL~~d~~ 332 (389)
T KOG0677|consen 253 GERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQLYLDRVLKGDTD 332 (389)
T ss_pred ceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHHHHHHHHHcCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999988741
Q ss_pred --CCceEEEecCCCCCccccchhhhhcCc-cccccceeehhHHhhcChHHHHhh
Q 013888 381 --DDYQVKITTQEDPLLGVWRGGSLLASS-PDFQAMCVTKAEYEENGSARCRRR 431 (434)
Q Consensus 381 --~~~~v~v~~~~~~~~~~w~Gasila~l-~~f~~~~Itr~ey~e~G~~~~~rk 431 (434)
..+++++-.+|.+.+-+|+||+++|++ ..-+.+|+||+||+|.|..++.+.
T Consensus 333 ~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD~d~fW~skqeyqE~G~~~l~k~ 386 (389)
T KOG0677|consen 333 KLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKDKDEFWMSKQEYQEEGINVLNKL 386 (389)
T ss_pred hhhheEEeccCCCccceeEEEchHHHHHHhcCCccceecHHHHHhhhHHHHHhh
Confidence 125788888899999999999999986 456789999999999999998764
No 11
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=4.4e-76 Score=583.71 Aligned_cols=363 Identities=39% Similarity=0.670 Sum_probs=330.7
Q ss_pred CeEEEEcCCcceEEeecCCCCCCeeeecCceeeCCCC-------ceecCcccccccccccccceeecccCCCcccChHHH
Q 013888 3 NIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSK-------KFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQ 75 (434)
Q Consensus 3 ~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~~-------~~~~g~~~~~~~~~d~~~~~~~~p~~~g~i~~~d~~ 75 (434)
++||||+||+++|+||+|++.|++++||++++++..+ .+++|+++. ...+ ...+++|+++|.|.|||.+
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~G~~a~--~~~~--~~~~~~P~~~G~i~d~~~~ 77 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVVFPSIVGRPKDGKGMVGDAKDTFVGDEAQ--EKRG--GLELKYPIEHGIVENWDDM 77 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEEccceeeEecccccccCCCcceEecchhh--hcCC--CceecCCCcCCEEeCHHHH
Confidence 6899999999999999999999999999999876543 467898875 3332 3479999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCCCCCCcEEE
Q 013888 76 RDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLV 155 (434)
Q Consensus 76 e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~~tglV 155 (434)
+.+|+|+|.+.|+++|+++|+++++|.++++..|+++++++||.|+++++++++++++++| ++| ..+|+|
T Consensus 78 e~i~~~~~~~~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~------~~g----~~~~lV 147 (373)
T smart00268 78 EKIWDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLY------ASG----RTTGLV 147 (373)
T ss_pred HHHHHHHHhhhcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHH------hCC----CCEEEE
Confidence 9999999998899999999999999999999999999999999999999999999999999 888 999999
Q ss_pred EecCCCceEEEeccCceecccccEEecccHHHHHHHHHHHHhhcC--CCCCChHHHHHHHHhhcccccccHHHHHHHHHh
Q 013888 156 VDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRA--INVMDETFIIDDVKEKLCFVSLDVARDLQIARK 233 (434)
Q Consensus 156 VDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~--~~~~~~~~~~~~iKe~~c~v~~~~~~~~~~~~~ 233 (434)
||+|++.|+|+||+||+++.+++.++++||++++++|.++|+.+. ++...+..+++++|+++||++.++.++++....
T Consensus 148 VDiG~~~t~v~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~ 227 (373)
T smart00268 148 IDSGDGVTHVVPVVDGYVLPHAIKRIDIAGRDLTDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKKARE 227 (373)
T ss_pred EecCCCcceEEEEECCEEchhhheeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhheeeecCChHHHHHHhhh
Confidence 999999999999999999999999999999999999999998743 333445688999999999999998877665432
Q ss_pred cCCCCceeEeeeCCCCcccccccccChhhHhhhhccCCCCCCCCCccccccchhHHHHHHHhhhhccCCccEEEccCccc
Q 013888 234 RGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERF 313 (434)
Q Consensus 234 ~~~~~~~~~~~~lpd~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~er~ 313 (434)
..........|.|||+. .+.++.||+
T Consensus 228 ~~~~~~~~~~~~lpdg~------------------------------------------------------~~~~~~er~ 253 (373)
T smart00268 228 SSESSKLEKTYELPDGN------------------------------------------------------TIKVGNERF 253 (373)
T ss_pred cccccccceeEECCCCC------------------------------------------------------EEEEChHHe
Confidence 11122345679999987 688899999
Q ss_pred cCCccccCCCCCCCCCCCHHHHHHHHHHhcChhhHHHhHcCeEEecCCCCCcChHHHHHHhhcccCCCCceEEEecCCCC
Q 013888 314 LVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEDP 393 (434)
Q Consensus 314 ~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~~~ 393 (434)
.+||+||+|+..+.+..+|+++|.++|.+||+|+|+.|++||+||||+|++|||.+||++||..+.|...++++..++++
T Consensus 254 ~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~ 333 (373)
T smart00268 254 RIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPER 333 (373)
T ss_pred eCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998889999998999
Q ss_pred CccccchhhhhcCccccccceeehhHHhhcChHHHHhhcC
Q 013888 394 LLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 433 (434)
Q Consensus 394 ~~~~w~Gasila~l~~f~~~~Itr~ey~e~G~~~~~rk~~ 433 (434)
.+++|+|||++|++++|+++||||+||+|+|+++++||||
T Consensus 334 ~~~~W~G~silas~~~f~~~~vtk~eY~E~G~~i~~~k~~ 373 (373)
T smart00268 334 KYSVWLGGSILASLSTFEDMWITKKEYEEHGSQIVERKCF 373 (373)
T ss_pred ccceEeCcccccCccchhhhEEEHHHHhhhCcceEEeecC
Confidence 9999999999999999999999999999999999999997
No 12
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=3.9e-73 Score=562.05 Aligned_cols=359 Identities=42% Similarity=0.714 Sum_probs=326.4
Q ss_pred eEEEEcCCcceEEeecCCCCCCeeeecCceeeCCC--------CceecCcccccccccccccceeecccCCCcccChHHH
Q 013888 4 IVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSS--------KKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQ 75 (434)
Q Consensus 4 ~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~--------~~~~~g~~~~~~~~~d~~~~~~~~p~~~g~i~~~d~~ 75 (434)
+||||+||+++|+||+|++.|++++||++++++.. ..+++|+++. ...+. .+.+++|+++|.+.||+.+
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~~G~~a~--~~~~~-~~~~~~P~~~G~i~d~~~~ 77 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSVMVGAGDKDYFVGEEAL--EKRGL-GLELIYPIEHGIVVDWDDM 77 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceEeeccceeecCcccccccCCCceEEchhhh--hCCCC-ceEEcccccCCEEeCHHHH
Confidence 69999999999999999999999999999987653 5678999887 34432 5889999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCCCCCCcEEE
Q 013888 76 RDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLV 155 (434)
Q Consensus 76 e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~~tglV 155 (434)
+.+|+|+|.+.|..+++++++++++|+++++..|+++++++||.+++++++++++++|++| ++| ..+|||
T Consensus 78 e~~~~~~~~~~l~~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~------~~g----~~~~lV 147 (371)
T cd00012 78 EKIWDHLFFNELKVNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLY------ASG----RTTGLV 147 (371)
T ss_pred HHHHHHHHHHhcCCCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHH------hcC----CCeEEE
Confidence 9999999998888899999999999999999999999999999999999999999999999 888 899999
Q ss_pred EecCCCceEEEeccCceecccccEEecccHHHHHHHHHHHHhhcCC--CCCChHHHHHHHHhhcccccccHHHHHHHHHh
Q 013888 156 VDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAI--NVMDETFIIDDVKEKLCFVSLDVARDLQIARK 233 (434)
Q Consensus 156 VDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~--~~~~~~~~~~~iKe~~c~v~~~~~~~~~~~~~ 233 (434)
||+|++.|+|+||+||+++.+++.++++||++++++|+++|+.+++ +...+...++++|+++||++.++.++.+....
T Consensus 148 VDiG~~~t~i~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~ 227 (371)
T cd00012 148 VDSGDGVTHVVPVYDGYVLPHAIKRLDLAGRDLTRYLKELLRERGYELNSSDEREIVRDIKEKLCYVALDIEEEQDKSAK 227 (371)
T ss_pred EECCCCeeEEEEEECCEEchhhheeccccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhheeecCCHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999998875 33445688999999999999988766532111
Q ss_pred cCCCCceeEeeeCCCCcccccccccChhhHhhhhccCCCCCCCCCccccccchhHHHHHHHhhhhccCCccEEEccCccc
Q 013888 234 RGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERF 313 (434)
Q Consensus 234 ~~~~~~~~~~~~lpd~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~er~ 313 (434)
........|.|||+. .+.++.|||
T Consensus 228 --~~~~~~~~~~lpd~~------------------------------------------------------~i~~~~er~ 251 (371)
T cd00012 228 --ETSLLEKTYELPDGR------------------------------------------------------TIKVGNERF 251 (371)
T ss_pred --cCCccceeEECCCCe------------------------------------------------------EEEEChHHh
Confidence 122335678999887 688999999
Q ss_pred cCCccccCCCCCCCCCCCHHHHHHHHHHhcChhhHHHhHcCeEEecCCCCCcChHHHHHHhhcccCCC--CceEEEecCC
Q 013888 314 LVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPD--DYQVKITTQE 391 (434)
Q Consensus 314 ~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIiltGG~s~~~G~~~RL~~eL~~~~~~--~~~v~v~~~~ 391 (434)
.+||+||+|+..+....+|+++|.++|..||+|.|+.+++||+||||+|++|||.+||++||..+.|. ...+++...+
T Consensus 252 ~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~ 331 (371)
T cd00012 252 RAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPP 331 (371)
T ss_pred hChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCC
Confidence 99999999999888899999999999999999999999999999999999999999999999999987 5678888888
Q ss_pred CCCccccchhhhhcCccccccceeehhHHhhcChHHHHhh
Q 013888 392 DPLLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRR 431 (434)
Q Consensus 392 ~~~~~~w~Gasila~l~~f~~~~Itr~ey~e~G~~~~~rk 431 (434)
+|.+++|+|||++|++++|+++||||+||+|+|+++++||
T Consensus 332 ~~~~~aw~G~si~as~~~~~~~~itk~eY~E~G~~~~~~k 371 (371)
T cd00012 332 ERKYSVWLGGSILASLSTFQQLWITKEEYEEHGPSIVHRK 371 (371)
T ss_pred CccccEEeCchhhcCchhhhheEeeHHHHhhhCchhEecC
Confidence 9999999999999999999999999999999999999887
No 13
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=1.2e-71 Score=549.60 Aligned_cols=378 Identities=34% Similarity=0.582 Sum_probs=323.8
Q ss_pred CeEEEEcCCcceEEeecCCCCCCeeeecCceeeC---------CCCceecCcccccccccccccceeecccCCCcccChH
Q 013888 3 NIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPL---------SSKKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSD 73 (434)
Q Consensus 3 ~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~---------~~~~~~~g~~~~~~~~~d~~~~~~~~p~~~g~i~~~d 73 (434)
++||||+||+++|+||||++.|++++|+++++.. ...+.++|+++. +..+.....+++|+++|.|.||+
T Consensus 7 ~~iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~--~~~~~~~~~~~~p~~~g~i~~W~ 84 (444)
T COG5277 7 PTIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQ--NDRDNSLLELRYPIENGIILNWD 84 (444)
T ss_pred CeEEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhh--hccCCccceeecccccCccCCcH
Confidence 3499999999999999999999999999999874 234556888887 56665678999999999999999
Q ss_pred HHHHHHHHHhhc--cCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCCCCCC
Q 013888 74 LQRDIWAHLFSS--LLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQ 151 (434)
Q Consensus 74 ~~e~il~~~~~~--~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~~ 151 (434)
+++++|+|+|.+ .+...+.++|++++||++++...|+++++++||.|+||++++.++++|++| ++| ..
T Consensus 85 ~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~y------a~g----~~ 154 (444)
T COG5277 85 AMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLY------ASG----SS 154 (444)
T ss_pred HHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHH------hcC----CC
Confidence 999999999998 688889999999999999999999999999999999999999999999999 888 77
Q ss_pred --cEEEEecCCCceEEEeccCceecccccEEecccHHHHHHHHHHHHhh-----cCCCCCCh-----HHHHHHHHhhcc-
Q 013888 152 --CSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSY-----RAINVMDE-----TFIIDDVKEKLC- 218 (434)
Q Consensus 152 --tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~-----~~~~~~~~-----~~~~~~iKe~~c- 218 (434)
+|+|||+|++.|+|+||+||.++.++++++++||++++.+|.++|.. +++.+..+ .+.++.+|+++|
T Consensus 155 ~~~g~ViD~G~~~t~v~PV~DG~~l~~a~~ri~~gG~~it~~l~~lL~~~~~~~~~~~l~~e~~~~~~ei~~~ik~e~~~ 234 (444)
T COG5277 155 DETGLVIDSGDSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCE 234 (444)
T ss_pred CCceEEEEcCCCceeeEeeeccccccccceeeecCcHHHHHHHHHHHhhcccccCCcccccccccccHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999998 45544444 789999999999
Q ss_pred ------cccccHHHHHHHHHhcCCCCceeEeeeCCCCcccccccccChhhHhhhhccCCCCCCCCCccccccchhHHHHH
Q 013888 219 ------FVSLDVARDLQIARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEE 292 (434)
Q Consensus 219 ------~v~~~~~~~~~~~~~~~~~~~~~~~~~lpd~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (434)
|+..+..+..+........... ...... .++ ..
T Consensus 235 ~~~~~~y~~~~~~~~~~e~~~~~~~~~~-----~~~~~~-----~~~-------------------------------~~ 273 (444)
T COG5277 235 TDDESAYVSLDAEEEFEEEEEKPAEKST-----ESTFQL-----SKE-------------------------------TS 273 (444)
T ss_pred ccccccchhhcchHHHHHHhhhhhhhcc-----cccccc-----cch-------------------------------hc
Confidence 8888777665554321110000 000000 000 00
Q ss_pred HHhhhhccCCccEEEccCc-cccCCccccCCC--CCCCCCCC---------------------------HHHHHHHHHHh
Q 013888 293 ARDRKRADLAKNEFDLTNE-RFLVPEMIFQPA--DLGMNQAG---------------------------LAECIVRAVNS 342 (434)
Q Consensus 293 ~~~~~~~~~~~~~i~l~~e-r~~~~E~lF~p~--~~~~~~~~---------------------------l~~~I~~~i~~ 342 (434)
.....+..+++..+.++.| ||.+||.+|+|. ..+++..+ |.+++.++|..
T Consensus 274 ~~~~~~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~e~v~~si~~ 353 (444)
T COG5277 274 IAKESKELPDGEEIEFGNEERFKAPEILFKPELPISGLEEAGKIDESKQELVAENYEISPTNLGNDIAGLPELVYQSIQI 353 (444)
T ss_pred cccccccCCCCceEeechhhhhhcchhhcCCccccccccccccchhhhhhhhhhccccccccccccccchHHHHHHHHHh
Confidence 0000011123447999988 999999999999 77766666 99999999999
Q ss_pred cChhhHHHhHcCeEEecCCCCCcChHHHHHHhhcccCCCCceEEEecCCCCCccccchhhhhcCccccccceeehhHHhh
Q 013888 343 CHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLASSPDFQAMCVTKAEYEE 422 (434)
Q Consensus 343 ~~~d~r~~l~~nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasila~l~~f~~~~Itr~ey~e 422 (434)
||.+.|+.|++||+||||+|++|||.+||++||+.+.|..+.+.|.++++|.+.+|+|||+||++.+|+++||||+||+|
T Consensus 354 ~~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~~W~GaSila~~~~~~~~~itk~eY~e 433 (444)
T COG5277 354 CDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPDPSLDAWLGASILASLETFQQLWITKEEYEE 433 (444)
T ss_pred ccHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCCchhhccccchhhhccccchhheEeeHHHhhh
Confidence 99999999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cChHHHHhhcC
Q 013888 423 NGSARCRRRFF 433 (434)
Q Consensus 423 ~G~~~~~rk~~ 433 (434)
+|++++++|++
T Consensus 434 ~G~~~~~~~~~ 444 (444)
T COG5277 434 HGPDILQEKRF 444 (444)
T ss_pred hhhHHHhhccC
Confidence 99999999875
No 14
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=100.00 E-value=5.8e-64 Score=479.70 Aligned_cols=422 Identities=24% Similarity=0.366 Sum_probs=328.3
Q ss_pred CCeEEEEcCCcceEEeecCCCCCCeeeecCceeeCCCC----ceecCcccccccccccccceeecccCCCcccChHHHHH
Q 013888 2 SNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSK----KFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRD 77 (434)
Q Consensus 2 ~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~~----~~~~g~~~~~~~~~d~~~~~~~~p~~~g~i~~~d~~e~ 77 (434)
+.|||||+||+.+||||+|+..|+++|++++.++++.+ ..++|+... +. +......++|+++.+|+||+.+|.
T Consensus 23 ~~piVIDNGS~~~RaGw~ge~eP~lvFrNvl~r~Rdrk~~~s~t~vgnd~~--~~-~~~Rs~~rSPFd~nVvtNwel~E~ 99 (645)
T KOG0681|consen 23 TIPIVIDNGSYECRAGWAGEKEPRLVFRNVLTRPRDRKLGASVTLVGNDIL--NF-QGVRSSPRSPFDRNVVTNWELMEQ 99 (645)
T ss_pred CCcEEEeCCceeEeecccCCCCccchhhhhhccccccccccccccccchhh--hh-hhhhccCCCCCcCCccccHHHHHH
Confidence 36899999999999999999999999999999887542 246777665 22 223467789999999999999999
Q ss_pred HHHHHhhccCCCCC--CCCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCCCCCCcEEE
Q 013888 78 IWAHLFSSLLHISP--SASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLV 155 (434)
Q Consensus 78 il~~~~~~~L~~~~--~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~~tglV 155 (434)
+++|+|. +||+++ -+|||++||+.++|...|+.+.|+|||.||||+|.+..+++.|+||+.+ .++ ..+|+|
T Consensus 100 ilDY~F~-~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~hN~~--~~~----~~~~li 172 (645)
T KOG0681|consen 100 ILDYIFG-KLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYHNYG--KSS----NKSGLI 172 (645)
T ss_pred HHHHHHH-hcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhhccC--ccc----CcceEE
Confidence 9999998 699988 4799999999999999999999999999999999999999999998654 333 458999
Q ss_pred EecCCCceEEEeccCceecccccEEecccHHHHHHHHHHHHhhcCCCCC--ChHHHHHHHHhhcccccccHHHHHHHHHh
Q 013888 156 VDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVM--DETFIIDDVKEKLCFVSLDVARDLQIARK 233 (434)
Q Consensus 156 VDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~--~~~~~~~~iKe~~c~v~~~~~~~~~~~~~ 233 (434)
|++|++.|+|+||.||..+.+.++++++||..+..||.+||+.+++-+. .+....+.++..+||++.||.+++..+.+
T Consensus 173 is~g~~~T~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lmq~Kyp~~~~~~t~sk~E~l~~eHcyis~DY~eei~~~l~ 252 (645)
T KOG0681|consen 173 ISMGHSATHVIPVLDGRLILKDVKRINWGGYQAGDYLSRLMQLKYPFHLNAFTGSKAERLLHEHCYISPDYREEIIKILE 252 (645)
T ss_pred EecCCCcceeEEEecCchhhhcceeeccCcchHHHHHHHHHhccCccchhhcCHHHHHHHhhhhceeCcchHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999875432 35677899999999999999999887765
Q ss_pred cCCCCceeEeeeCCCCccc------ccccccC------hhhHhhh-------------------hccCCCCCCCCC----
Q 013888 234 RGKDNLLRCTYVLPDGVTH------TKGFVKD------PDAAQRY-------------------LSLSDGSRSQPS---- 278 (434)
Q Consensus 234 ~~~~~~~~~~~~lpd~~~~------~~~~i~~------~~~~~~~-------------------~~~~~~~~~~~~---- 278 (434)
...-......+.+|-...- .....++ +++.++. .+++...++..|
T Consensus 253 ~d~~d~~~~~~qlP~~evl~~~e~~l~Ae~kqekRlq~~a~lkrv~k~~~re~~redeqql~~~~kaq~e~e~~~D~~q~ 332 (645)
T KOG0681|consen 253 MDYYDENRNYFQLPYTEVLAEVELALTAEKKQEKRLQEQAALKRVEKINARENRREDEQQLESYNKAQGEQESNLDLEQK 332 (645)
T ss_pred hhhhhccceEEecccccccchhhhhccHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHhhhchhcCccHhhh
Confidence 3221112233444421100 0000000 0000000 000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 013888 279 -------------------------------------------------------------------------------- 278 (434)
Q Consensus 279 -------------------------------------------------------------------------------- 278 (434)
T Consensus 333 ~~ll~v~~eL~~d~lk~k~~qr~lkas~dar~rar~eke~Er~~k~~~~r~~~~~swl~e~r~k~~~ller~~~kk~lk~ 412 (645)
T KOG0681|consen 333 FPLLNVPAELDEDQLKEKKKQRILKASTDARLRARVEKELERLNKLEEEREENLISWLEELREKLEKLLERISQKKRLKQ 412 (645)
T ss_pred chhhcchhhhCHHHHHHHHHHHHHHhhhhhhccccccchHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred -----------------------------------ccccccch-------hHH-----HHHHHhhh------hccC----
Q 013888 279 -----------------------------------ETVKDMDR-------TEV-----MEEARDRK------RADL---- 301 (434)
Q Consensus 279 -----------------------------------~~~~~~~~-------~~~-----~~~~~~~~------~~~~---- 301 (434)
+.|++.|+ .++ ++++.... .|..
T Consensus 413 e~~~r~s~~Sq~rmr~~~~La~~~~~rrk~~~~t~D~fg~~Dedw~vYe~lee~~~~~~~dl~~l~~~L~e~Dp~F~~~~ 492 (645)
T KOG0681|consen 413 ELKDRKSHASQLRMRALARLAYEQVVRRKRKEATPDNFGARDEDWDVYEDLEEENKSILEDLKSLNHELLEFDPHFTQYV 492 (645)
T ss_pred hhhhhhhhhhHhhhHHHHhhhHHHHHHHhcccCCccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHHhhCccccccc
Confidence 00000000 000 00000000 0000
Q ss_pred ----------------CccEEEccCccccCCccccCCCCCCCCCCCHHHHHHHHHHhcChhhHHHhHcCeEEecCCCCCc
Q 013888 302 ----------------AKNEFDLTNERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFP 365 (434)
Q Consensus 302 ----------------~~~~i~l~~er~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIiltGG~s~~~ 365 (434)
..+.++++.||+++||++|+|+++|.+++||.+++..++.+.|.|.+..|.+||+||||.|++|
T Consensus 493 ~~~~d~~~~~~p~~~~e~~qlh~nVEriRvPEIiFqPsiiG~dQaGl~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~p 572 (645)
T KOG0681|consen 493 EGTTDPRNGVLPGFTAEDYQLHLNVERIRVPEIIFQPSIIGIDQAGLAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLP 572 (645)
T ss_pred ccccCcccCcchhHHHhhhhhhhcceeeccceeeeccccccchhhhHHHHHHHHHHhCchhhhHhhhhheEeecccccCc
Confidence 1246779999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHhhcccCCCCceEEEecCCCCCccccchhhhhcCccccccceeehhHHhhcChHHHHhhcC
Q 013888 366 RFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 433 (434)
Q Consensus 366 G~~~RL~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasila~l~~f~~~~Itr~ey~e~G~~~~~rk~~ 433 (434)
|+.+||..||+.+.|-+++|.|+.+.+|.++||.||+.+|...+|...||||+||+|+|+..++..+.
T Consensus 573 GmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n~~f~~~~~Tr~dy~E~G~e~~kEh~~ 640 (645)
T KOG0681|consen 573 GMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAANPTFTLTQITRKDYEEKGEEYLKEHVA 640 (645)
T ss_pred CHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcCcccchhhhhHHhhhhhhHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999987653
No 15
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=100.00 E-value=6.9e-59 Score=420.14 Aligned_cols=370 Identities=29% Similarity=0.490 Sum_probs=307.5
Q ss_pred CeEEEEcCCcceEEeecCCCCCCeeeecCceeeCC----------------CCceecCcccccccccccccceeecccCC
Q 013888 3 NIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLS----------------SKKFIHPSPTAASATEDLTSAAVRRPIDR 66 (434)
Q Consensus 3 ~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~----------------~~~~~~g~~~~~~~~~d~~~~~~~~p~~~ 66 (434)
.++|+|+|+.++|.||+|...|++++|++++.... ..++++|++++ . ...+.+.+|+.+
T Consensus 5 ~p~V~d~Gtgytklg~agn~~p~~i~p~~ia~~~~~~~s~~~~~~~~~~~~dldf~ig~eal--~---~~~ysl~ypiRh 79 (415)
T KOG0678|consen 5 LPCVIDNGTGYTKLGYAGNTEPQFIIPTAIAVKESAAVSSKATRRVKRGTEDLDFFIGDEAL--D---ATTYSLKYPIRH 79 (415)
T ss_pred CceeeccCcceeeeeccccCCcccccceeEEeccccccccchhhhhhccccccceecccHHH--h---hcccccccceec
Confidence 45999999999999999999999999999875322 12478899987 2 236899999999
Q ss_pred CcccChHHHHHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCC
Q 013888 67 GYLINSDLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGL 146 (434)
Q Consensus 67 g~i~~~d~~e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~ 146 (434)
|.+.|||.||++|+..+.++|..+|++|-.||+||++++++.|+.++|+|||.|++|.+|++.++++|+-..-. +.-.
T Consensus 80 g~ve~wd~mer~~~q~ifkylr~ePedh~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaaswt--s~~v 157 (415)
T KOG0678|consen 80 GQVEDWDLMERFWEQCIFKYLRAEPEDHYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASWT--SRQV 157 (415)
T ss_pred cccccHHHHHHHHhhhhhhhhcCCcccceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHH--Hhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999871110 1111
Q ss_pred CCCCCcEEEEecCCCceEEEeccCceecccccEEecccHHHHHHHHHHHHhhcCCCCCCh--HHHHHHHHhhcccccccH
Q 013888 147 LSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDE--TFIIDDVKEKLCFVSLDV 224 (434)
Q Consensus 147 ~~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~--~~~~~~iKe~~c~v~~~~ 224 (434)
....-||+|||.|.+.|+|+||.|||++.++++.+|++|+++|.++.+||+.++..++.+ .+..+.+||++||+++|.
T Consensus 158 ~er~ltG~VidsGdgvThvipvaEgyVigScik~iPiagrdiT~fiQ~llRer~~~iP~e~sl~tak~iKe~ycy~cPdi 237 (415)
T KOG0678|consen 158 GERFLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYTCPDI 237 (415)
T ss_pred hhheeeeEEEecCCCeeEEEEeecceEEeeeeccccccCCchhHHHHHHhhCCCCCCChHHhhhhhHHHHhhhcccCcHH
Confidence 234679999999999999999999999999999999999999999999998887666543 578999999999999998
Q ss_pred HHHHHHHHhcCCCCceeEeeeCCCCcccccccccChhhHhhhhccCCCCCCCCCccccccchhHHHHHHHhhhhccCCcc
Q 013888 225 ARDLQIARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKN 304 (434)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~lpd~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (434)
.++..++... . .+++++-. +.....+...
T Consensus 238 vkef~k~d~e--p----------------~K~ikq~~---------------------------------~~~~i~~~~~ 266 (415)
T KOG0678|consen 238 VKEFAKYDRE--P----------------AKWIKQYT---------------------------------GINVITGKKF 266 (415)
T ss_pred HHHHHHhccC--H----------------HHHHHHHh---------------------------------ccchhcCCce
Confidence 8876554210 0 01111100 0000011223
Q ss_pred EEEccCccccCCccccCCCCCCCCC-CCHHHHHHHHHHhcChhhHHHhHcCeEEecCCCCCcChHHHHHHhhcccC----
Q 013888 305 EFDLTNERFLVPEMIFQPADLGMNQ-AGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLV---- 379 (434)
Q Consensus 305 ~i~l~~er~~~~E~lF~p~~~~~~~-~~l~~~I~~~i~~~~~d~r~~l~~nIiltGG~s~~~G~~~RL~~eL~~~~---- 379 (434)
.++++-|||..||++|+|.....+. ..|++++...|++||+|.|+-||+||++.||.+++++|..|+++++..+.
T Consensus 267 ~vDvgyerFlgpEiff~Pe~a~~d~~~~~~~~vd~~Iq~~pIdvrr~ly~nivlsggst~fk~fgr~lqrD~kr~vd~rl 346 (415)
T KOG0678|consen 267 VVDVGYERFLGPEIFFHPEFANPDFLTPLSEVVDWVIQHCPIDVRRPLYKNIVLSGGSTMFKDFGRRLQRDLKRLVDTRL 346 (415)
T ss_pred eecccHHhhcChhhhcCccccCCccCcchHHHhhhhhhhCCcccchhhhhHHhhccchHHHHHhhhhccHHHHHHHHHHH
Confidence 6888999999999999999876554 47999999999999999999999999999999999999999999987653
Q ss_pred ----------CCCceEEEecCCCCCccccchhhhhcCccccccceeehhHHhhcChHHHHh
Q 013888 380 ----------PDDYQVKITTQEDPLLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRR 430 (434)
Q Consensus 380 ----------~~~~~v~v~~~~~~~~~~w~Gasila~l~~f~~~~Itr~ey~e~G~~~~~r 430 (434)
+....+++....-..+++|.|||+||+.+.|-+.+-||++|+|+|++|++.
T Consensus 347 ~~s~~lsg~k~~~vdvqvish~~qr~avwfggs~lastpef~~~~~tk~~yee~g~si~r~ 407 (415)
T KOG0678|consen 347 AESEGLSGIKSKPVDVQVLSHLLQRTAVWFGGSKLASTPEFVPACHTKEDYEEYGPSICRT 407 (415)
T ss_pred HHhcccccCCCCCceeehhhhhhhhcceeccCccccCCcccccccCcchhhhhhChhhhhc
Confidence 223456666666678999999999999999999999999999999999864
No 16
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=100.00 E-value=5.8e-42 Score=326.44 Aligned_cols=362 Identities=20% Similarity=0.262 Sum_probs=247.6
Q ss_pred ccceeecccCCCcccC----------hHHHHHHHHHHhhccCCCCCC---CCcEEEeccCCCCHHHHHHHHHHHhhhcCC
Q 013888 56 TSAAVRRPIDRGYLIN----------SDLQRDIWAHLFSSLLHISPS---ASSLLLTEPLFALPSIQRATDELVFEDFNF 122 (434)
Q Consensus 56 ~~~~~~~p~~~g~i~~----------~d~~e~il~~~~~~~L~~~~~---~~~vll~e~~~~~~~~re~l~e~lfE~~~~ 122 (434)
.+|.+++|+++|...- .++++.||+|++.+.|.++++ .+.++++.|...-+...+.+..++|-+++|
T Consensus 177 ~~y~l~~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F 256 (618)
T KOG0797|consen 177 SPYCLYHPIRRGHFNVSPPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGF 256 (618)
T ss_pred CcceeecccccceeccCCcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhcc
Confidence 4678899999998743 357889999999999999874 578888888777777778888999999999
Q ss_pred ceeeeccccccccccccccCCCCCCCCCCcEEEEecCCCceEEEeccCceecccccEEecccHHHHHHHHHHHHhhcCCC
Q 013888 123 KSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAIN 202 (434)
Q Consensus 123 ~~v~~~~~~~ls~~~~~~~~~~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~ 202 (434)
.++.+++++++++| ++| .+++||||||+..|+|+||.||..++++..++++||+++++.|.++|.+.+|.
T Consensus 257 ~~~~v~QESlaatf------GaG----lss~CVVdiGAQkTsIaCVEdGvs~~ntri~L~YGGdDitr~f~~ll~rs~FP 326 (618)
T KOG0797|consen 257 NSAVVHQESLAATF------GAG----LSSACVVDIGAQKTSIACVEDGVSLPNTRIILPYGGDDITRCFLWLLRRSGFP 326 (618)
T ss_pred ceEEEEhhhhHHHh------cCC----ccceeEEEccCcceeEEEeecCccccCceEEeccCCchHHHHHHHHHHhcCCC
Confidence 99999999999999 888 88999999999999999999999999999999999999999999999988765
Q ss_pred C-------CChHHHHHHHHhhcccccccHHHHH-HHHHhcCC-CCceeEeeeCCCCcccccccccChhh-HhhhhccCCC
Q 013888 203 V-------MDETFIIDDVKEKLCFVSLDVARDL-QIARKRGK-DNLLRCTYVLPDGVTHTKGFVKDPDA-AQRYLSLSDG 272 (434)
Q Consensus 203 ~-------~~~~~~~~~iKe~~c~v~~~~~~~~-~~~~~~~~-~~~~~~~~~lpd~~~~~~~~i~~~~~-~~~~~~~~~~ 272 (434)
. +.++.+++++||++|.+........ ..+..+.. ......+|.+-|..+- .|.. +..+.-....
T Consensus 327 y~d~~v~~~~d~lLl~~LKe~Fc~l~~a~~~vQ~~~F~~R~pn~~~~kytfk~~DE~ml------APlaLF~P~lf~~~~ 400 (618)
T KOG0797|consen 327 YQDCDVLAPIDWLLLNQLKEKFCHLRAAELGVQLTVFSYREPNPPTLKYTFKLGDEVML------APLALFYPNLFVIEG 400 (618)
T ss_pred cccccccccccHHHHHHHHHHhccccHhhhhhhhhhhhccCCCCcceeeeeeccchhhc------cchhhhhhhhhhccc
Confidence 3 3467899999999999876433221 22222211 2223344555554310 0100 0000000000
Q ss_pred CCCCCCccccccchhHH---HHHHHhhhhcc--CCc-------cEEEcc-------CccccCCccccCCCC---------
Q 013888 273 SRSQPSETVKDMDRTEV---MEEARDRKRAD--LAK-------NEFDLT-------NERFLVPEMIFQPAD--------- 324 (434)
Q Consensus 273 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~-------~~i~l~-------~er~~~~E~lF~p~~--------- 324 (434)
..+-....+...++... +.-+.+..+.+ ..+ ..+.+. .++-.-+|..-.++.
T Consensus 401 tk~~~~q~~~q~d~~d~fd~e~~~~~~~~~~~~~~g~~~l~ls~~i~~~~~~~~~l~~~~d~~Elg~t~~d~f~p~~~s~ 480 (618)
T KOG0797|consen 401 TKSHKNQSFPQPDREDLFDYEYLLEDTWKQDFGGGGNDGLQLSDSIGFSNRIRDQLPEKPDKEELGVTLKDNFAPLEKSI 480 (618)
T ss_pred cccccccccCCCCcccccchhhhhhhcccccccccccccccccccccccccccccccccccchhhccccccccCCchhhh
Confidence 00000000111222210 00011111110 000 001110 011112221111000
Q ss_pred C------------C--CCCC----CHHHHHHHHHHhcCh-hhHHHhHcCeEEecCCCCCcChHHHHHHhhcccCCCC---
Q 013888 325 L------------G--MNQA----GLAECIVRAVNSCHP-YLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDD--- 382 (434)
Q Consensus 325 ~------------~--~~~~----~l~~~I~~~i~~~~~-d~r~~l~~nIiltGG~s~~~G~~~RL~~eL~~~~~~~--- 382 (434)
+ + ..+. .|.+.|..+|..|-. |.+++|++.|.++||..++||+.+.|++.+....|+.
T Consensus 481 ~gslaa~~i~n~~~~~~~f~gl~l~ldqsii~sid~~~sdd~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~ 560 (618)
T KOG0797|consen 481 VGSLAAASIMNKKGLYESFYGLLLALDQSIISSIDSALSDDTKRKLFSSILLVGGAGLFPGLVAALEERILNAIPPGREA 560 (618)
T ss_pred hhhhhhhhhhcccceeccccchhhccchhHHHhhhhhccchhhHhhhhHHHhhcccccchhHHHHHHHHHhccCCccccc
Confidence 0 0 0122 455668888877654 7899999999999999999999999999999877762
Q ss_pred -ceEEEecCC---CCCccccchhhhhcCccccccceeehhHHhhcChHHHHhhcC
Q 013888 383 -YQVKITTQE---DPLLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 433 (434)
Q Consensus 383 -~~v~v~~~~---~~~~~~w~Gasila~l~~f~~~~Itr~ey~e~G~~~~~rk~~ 433 (434)
..|.|+.++ ||++-+|.||+|||.++.-.++||++.||..+|.++++-|++
T Consensus 561 I~~VsVip~prdMdp~~VaWKGaaIla~l~~~~ELwI~~~dW~~~G~RvL~~k~~ 615 (618)
T KOG0797|consen 561 IDTVSVIPPPRDMDPQFVAWKGAAILAILDFVRELWIENSDWQVHGVRVLQYKKY 615 (618)
T ss_pred cCceeecCCCcCCCchheEecchhhhhHHHHHHHHheechhHhhhhhhhhhhccc
Confidence 257788776 799999999999999999999999999999999999988864
No 17
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=1.1e-36 Score=297.56 Aligned_cols=316 Identities=17% Similarity=0.176 Sum_probs=240.6
Q ss_pred CCeEEEEcCCcceEEeecCCCCCCeeeecCceeeCC-CCceecCcccccccccccccceeecccCCCcccChHHHHHHHH
Q 013888 2 SNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLS-SKKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDIWA 80 (434)
Q Consensus 2 ~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~-~~~~~~g~~~~~~~~~d~~~~~~~~p~~~g~i~~~d~~e~il~ 80 (434)
+..|+||+||.++|+|+.|++ +...+||+++.... .+.+++|+++............+.+|+++|.|.||+.++.+|+
T Consensus 8 ~~~vgiDlGt~~t~i~~~~~~-~~~~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~e~ll~ 86 (335)
T PRK13930 8 SKDIGIDLGTANTLVYVKGKG-IVLNEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIEAIRPLKDGVIADFEATEAMLR 86 (335)
T ss_pred ccceEEEcCCCcEEEEECCCC-EEEecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeEEeecCCCCeEcCHHHHHHHHH
Confidence 345999999999999999876 46678999998753 3457899998722112334578899999999999999999999
Q ss_pred HHhhccCCCCC-CCCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCCCC-CCcEEEEec
Q 013888 81 HLFSSLLHISP-SASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSE-TQCSLVVDC 158 (434)
Q Consensus 81 ~~~~~~L~~~~-~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~-~~tglVVDi 158 (434)
|++.+.+...+ ...+++++.|..++...|+.+.+ +||.++++.++++++|++|+| ++|.... ..+++|||+
T Consensus 87 ~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~-~~e~~g~~~~~lv~ep~AAa~------a~g~~~~~~~~~lVvDi 159 (335)
T PRK13930 87 YFIKKARGRRFFRKPRIVICVPSGITEVERRAVRE-AAEHAGAREVYLIEEPMAAAI------GAGLPVTEPVGNMVVDI 159 (335)
T ss_pred HHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEecccHHHHHH------hcCCCcCCCCceEEEEe
Confidence 99976554333 36789999999998888777765 799999999999999999999 6663221 246799999
Q ss_pred CCCceEEEeccCceecccccEEecccHHHHHHHHHHHHhhcCCCCCChHHHHHHHHhhcccccccHHHHHHHHHhcCCCC
Q 013888 159 GFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKDN 238 (434)
Q Consensus 159 G~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~c~v~~~~~~~~~~~~~~~~~~ 238 (434)
|++.|+++||.+|.++. ....++||+++|+.|.+++..+ +........++++|+++|++..+...+
T Consensus 160 G~gttdvs~v~~g~~~~--~~~~~lGG~~id~~l~~~l~~~-~~~~~~~~~ae~~K~~~~~~~~~~~~~----------- 225 (335)
T PRK13930 160 GGGTTEVAVISLGGIVY--SESIRVAGDEMDEAIVQYVRRK-YNLLIGERTAEEIKIEIGSAYPLDEEE----------- 225 (335)
T ss_pred CCCeEEEEEEEeCCEEe--ecCcCchhHHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHhhcCcCCCCCc-----------
Confidence 99999999999999876 3568999999999999998765 222334567999999999987642111
Q ss_pred ceeEeeeCCCCcccccccccChhhHhhhhccCCCCCCCCCccccccchhHHHHHHHhhhhccCCccEEEccCccccCCcc
Q 013888 239 LLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLVPEM 318 (434)
Q Consensus 239 ~~~~~~~lpd~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~er~~~~E~ 318 (434)
.......+... +....+.++.+++ .|+
T Consensus 226 --~~~~~~~~~~~-------------------------------------------------~~~~~~~i~~~~~--~e~ 252 (335)
T PRK13930 226 --SMEVRGRDLVT-------------------------------------------------GLPKTIEISSEEV--REA 252 (335)
T ss_pred --eEEEECccCCC-------------------------------------------------CCCeeEEECHHHH--HHH
Confidence 00000000000 0001455666655 377
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHhcChhhHHHhHcC-eEEecCCCCCcChHHHHHHhhcccCCCCceEEEecCCCCCccc
Q 013888 319 IFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYES-IILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGV 397 (434)
Q Consensus 319 lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~n-IiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~~~~~~~ 397 (434)
+|.|- .++.+.|.++|.+|+.+.+..++.| |+|+||+|++|||.+||++++.. .+....+|..+.
T Consensus 253 i~~~~------~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~--------~v~~~~~p~~av 318 (335)
T PRK13930 253 LAEPL------QQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGL--------PVHIAEDPLTCV 318 (335)
T ss_pred HHHHH------HHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCC--------CceecCCHHHHH
Confidence 77763 3789999999999999999999997 99999999999999999999851 233345678888
Q ss_pred cchhhhhcC
Q 013888 398 WRGGSLLAS 406 (434)
Q Consensus 398 w~Gasila~ 406 (434)
-.||++++.
T Consensus 319 a~Ga~~~~~ 327 (335)
T PRK13930 319 ARGTGKALE 327 (335)
T ss_pred HHHHHHHHh
Confidence 899999874
No 18
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=3.3e-36 Score=294.01 Aligned_cols=313 Identities=17% Similarity=0.206 Sum_probs=237.9
Q ss_pred CCCeEEEEcCCcceEEeecCCCCCCeeeecCceeeCC-CCceecCcccccccccccccceeecccCCCcccChHHHHHHH
Q 013888 1 MSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLS-SKKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDIW 79 (434)
Q Consensus 1 ~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~-~~~~~~g~~~~~~~~~d~~~~~~~~p~~~g~i~~~d~~e~il 79 (434)
++..|+||+||.++|+|++|++. .+.+||+++.++. .+.+++|+++......+.....+.+|+++|.+.||+.++.+|
T Consensus 4 ~~~~igIDlGt~~~~i~~~~~~~-~~~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~~pi~~G~i~d~~~~~~ll 82 (334)
T PRK13927 4 FSNDLGIDLGTANTLVYVKGKGI-VLNEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFDVTEKML 82 (334)
T ss_pred CcceeEEEcCcceEEEEECCCcE-EEecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEEecCCCCeecCHHHHHHHH
Confidence 35679999999999999999887 5789999998866 345689999873222334567889999999999999999999
Q ss_pred HHHhhccCCCCCCCC-cEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCCCCC-CcEEEEe
Q 013888 80 AHLFSSLLHISPSAS-SLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSET-QCSLVVD 157 (434)
Q Consensus 80 ~~~~~~~L~~~~~~~-~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~-~tglVVD 157 (434)
++++.+.+.. +.++ .++++.| .+....+++.++.+||.++++.++++++|++|+| ++|..... ..++|||
T Consensus 83 ~~~~~~~~~~-~~~~~~~vi~vP-~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~------~~g~~~~~~~~~lvvD 154 (334)
T PRK13927 83 KYFIKKVHKN-FRPSPRVVICVP-SGITEVERRAVRESALGAGAREVYLIEEPMAAAI------GAGLPVTEPTGSMVVD 154 (334)
T ss_pred HHHHHHHhhc-cCCCCcEEEEeC-CCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHH------HcCCcccCCCeEEEEE
Confidence 9999877766 6556 5666666 4556666778899999999999999999999999 66632222 3469999
Q ss_pred cCCCceEEEec-cCceecccccEEecccHHHHHHHHHHHHhhcCCCCCChHHHHHHHHhhcccccccHHHHHHHHHhcCC
Q 013888 158 CGFSFTHAAPV-FQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGK 236 (434)
Q Consensus 158 iG~~~t~v~pV-~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~c~v~~~~~~~~~~~~~~~~ 236 (434)
+|++.|+++|+ ++|...... +++||+++|+.|.+++..+. .+..+...++++|+++|++..+...
T Consensus 155 iGggttdvs~v~~~~~~~~~~---~~lGG~~id~~l~~~l~~~~-~~~~~~~~ae~iK~~~~~~~~~~~~---------- 220 (334)
T PRK13927 155 IGGGTTEVAVISLGGIVYSKS---VRVGGDKFDEAIINYVRRNY-NLLIGERTAERIKIEIGSAYPGDEV---------- 220 (334)
T ss_pred eCCCeEEEEEEecCCeEeeCC---cCChHHHHHHHHHHHHHHHh-CcCcCHHHHHHHHHHhhccCCCCCC----------
Confidence 99999999999 777776654 47999999999999887542 2233456799999999988643110
Q ss_pred CCceeEeeeC--CCCcccccccccChhhHhhhhccCCCCCCCCCccccccchhHHHHHHHhhhhccCCccEEEccCcccc
Q 013888 237 DNLLRCTYVL--PDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFL 314 (434)
Q Consensus 237 ~~~~~~~~~l--pd~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~er~~ 314 (434)
..+.+ ++... +....+.++.++|.
T Consensus 221 -----~~~~~~~~~~~~-------------------------------------------------~~~~~~~i~~~~~~ 246 (334)
T PRK13927 221 -----LEMEVRGRDLVT-------------------------------------------------GLPKTITISSNEIR 246 (334)
T ss_pred -----ceEEEeCcccCC-------------------------------------------------CCCeEEEECHHHHH
Confidence 01111 11000 00014666666663
Q ss_pred CCccccCCCCCCCCCCCHHHHHHHHHHhcChhhHHHhHcC-eEEecCCCCCcChHHHHHHhhcccCCCCceEEEecCCCC
Q 013888 315 VPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYES-IILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEDP 393 (434)
Q Consensus 315 ~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~n-IiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~~~ 393 (434)
|++|.|. .++.++|.++|.+|+.+.++.++++ |+||||+|++|||.+||++++. .+ +....+|
T Consensus 247 --e~i~~~~------~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~------~~--v~~~~~P 310 (334)
T PRK13927 247 --EALQEPL------SAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETG------LP--VHVAEDP 310 (334)
T ss_pred --HHHHHHH------HHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHC------CC--cEecCCH
Confidence 7777763 4799999999999999998888874 9999999999999999999984 22 3344567
Q ss_pred CccccchhhhhcC
Q 013888 394 LLGVWRGGSLLAS 406 (434)
Q Consensus 394 ~~~~w~Gasila~ 406 (434)
..++-.||++++.
T Consensus 311 ~~ava~Ga~~~~~ 323 (334)
T PRK13927 311 LTCVARGTGKALE 323 (334)
T ss_pred HHHHHHHHHHHHh
Confidence 8889999998864
No 19
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=1.4e-33 Score=275.09 Aligned_cols=314 Identities=17% Similarity=0.203 Sum_probs=232.8
Q ss_pred eEEEEcCCcceEEeecCCCCCCeeeecCceeeCC-----CCceecCcccccccccccccceeecccCCCcccChHHHHHH
Q 013888 4 IVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLS-----SKKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDI 78 (434)
Q Consensus 4 ~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~-----~~~~~~g~~~~~~~~~d~~~~~~~~p~~~g~i~~~d~~e~i 78 (434)
.|=||+||.++++-..+. .-....||+++..++ ++.+++|+++..+..+.+.+..+++|+++|.|.||+.++.+
T Consensus 4 ~~giDlGt~~s~i~~~~~-~~~~~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~~~~ 82 (333)
T TIGR00904 4 DIGIDLGTANTLVYVKGR-GIVLNEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIVAIRPMKDGVIADFEVTEKM 82 (333)
T ss_pred eeEEecCcceEEEEECCC-CEEEecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEEEEecCCCCEEEcHHHHHHH
Confidence 478999999999854433 234556999987644 23477999987221133456788999999999999999999
Q ss_pred HHHHhhccCCCCCCCC-cEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCCC-CCCcEEEE
Q 013888 79 WAHLFSSLLHISPSAS-SLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLS-ETQCSLVV 156 (434)
Q Consensus 79 l~~~~~~~L~~~~~~~-~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~-~~~tglVV 156 (434)
|+|++.+.+......+ ++++++|..++...|+. ++.+||.++++.++++++|++|+| ++|... ...+++||
T Consensus 83 ~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~-~~~~~~~ag~~~~~li~ep~aaa~------~~g~~~~~~~~~lVv 155 (333)
T TIGR00904 83 IKYFIKQVHSRKSFFKPRIVICVPSGITPVERRA-VKESALSAGAREVYLIEEPMAAAI------GAGLPVEEPTGSMVV 155 (333)
T ss_pred HHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHH-HHHHHHHcCCCeEEEecCHHHHHH------hcCCcccCCceEEEE
Confidence 9999987665332222 69999999999998887 567899999999999999999999 666211 12568999
Q ss_pred ecCCCceEEEec-cCceecccccEEecccHHHHHHHHHHHHhhcCCCCCChHHHHHHHHhhcccccccHHHHHHHHHhcC
Q 013888 157 DCGFSFTHAAPV-FQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRG 235 (434)
Q Consensus 157 DiG~~~t~v~pV-~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~c~v~~~~~~~~~~~~~~~ 235 (434)
|+|++.|++++| ++|..+... .++||+++|+.|.+++..++ ....+...++++|+++|++..+..++... ..
T Consensus 156 DiG~gttdvs~v~~~~~~~~~~---~~lGG~did~~l~~~l~~~~-~~~~~~~~ae~lK~~l~~~~~~~~~~~~~-~~-- 228 (333)
T TIGR00904 156 DIGGGTTEVAVISLGGIVVSRS---IRVGGDEFDEAIINYIRRTY-NLLIGEQTAERIKIEIGSAYPLNDEPRKM-EV-- 228 (333)
T ss_pred EcCCCeEEEEEEEeCCEEecCC---ccchHHHHHHHHHHHHHHHh-cccCCHHHHHHHHHHHhccccccccccce-ee--
Confidence 999999999999 787776654 48999999999999887542 33334567999999999886542111000 00
Q ss_pred CCCceeEeeeCCCCcccccccccChhhHhhhhccCCCCCCCCCccccccchhHHHHHHHhhhhccCCccEEEccCccccC
Q 013888 236 KDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLV 315 (434)
Q Consensus 236 ~~~~~~~~~~lpd~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~er~~~ 315 (434)
......+.+|+ .+.+..+ .+
T Consensus 229 --~~~~~~~~~~~--------------------------------------------------------~~~i~~~--~~ 248 (333)
T TIGR00904 229 --RGRDLVTGLPR--------------------------------------------------------TIEITSV--EV 248 (333)
T ss_pred --cCccccCCCCe--------------------------------------------------------EEEECHH--HH
Confidence 00000111111 2333333 45
Q ss_pred CccccCCCCCCCCCCCHHHHHHHHHHhcChhhHHHhHc-CeEEecCCCCCcChHHHHHHhhcccCCCCceEEEecCCCCC
Q 013888 316 PEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYE-SIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEDPL 394 (434)
Q Consensus 316 ~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~-nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~~~~ 394 (434)
+|++|+|- .++.+.|.+++.+|+.+.+..+++ +|+||||+|++|||.+||++++.. .+....+|.
T Consensus 249 ~e~i~~~~------~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~--------~v~~~~~P~ 314 (333)
T TIGR00904 249 REALQEPV------NQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGL--------PVIVADDPL 314 (333)
T ss_pred HHHHHHHH------HHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCC--------CceecCChH
Confidence 67888873 378999999999999999999996 799999999999999999999942 234456788
Q ss_pred ccccchhhhhcC
Q 013888 395 LGVWRGGSLLAS 406 (434)
Q Consensus 395 ~~~w~Gasila~ 406 (434)
.++-.||++++.
T Consensus 315 ~~va~Ga~~~~~ 326 (333)
T TIGR00904 315 LCVAKGTGKALE 326 (333)
T ss_pred HHHHHHHHHHHh
Confidence 999999999864
No 20
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=1.2e-32 Score=267.98 Aligned_cols=309 Identities=17% Similarity=0.251 Sum_probs=233.6
Q ss_pred CeEEEEcCCcceEEeecCCCCCC-eeeecCceeeCCCC-ceecCcccccccccccccceeecccCCCcccChHHHHHHHH
Q 013888 3 NIVVLDNGGGLIKAGHGGERDPA-VTIPNCMYRPLSSK-KFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDIWA 80 (434)
Q Consensus 3 ~~vViD~Gs~~~k~G~ag~~~P~-~~~ps~~~~~~~~~-~~~~g~~~~~~~~~d~~~~~~~~p~~~g~i~~~d~~e~il~ 80 (434)
..|=||+||.++++ |... .+. ...||+++.....+ -.++|++|..+..+.+.+..+.+|+++|.|.|||.++.+|+
T Consensus 5 ~~~giDlGt~~~~i-~~~~-~~~~~~~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~~pi~~G~I~d~d~~~~~l~ 82 (335)
T PRK13929 5 TEIGIDLGTANILV-YSKN-KGIILNEPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAVRPMKDGVIADYDMTTDLLK 82 (335)
T ss_pred CeEEEEcccccEEE-EECC-CcEEecCCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEEecCCCCccCCHHHHHHHHH
Confidence 45889999999998 5432 232 33699998765443 35789998743334455678889999999999999999999
Q ss_pred HHhhc---cCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCCC-CCCcEEEE
Q 013888 81 HLFSS---LLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLS-ETQCSLVV 156 (434)
Q Consensus 81 ~~~~~---~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~-~~~tglVV 156 (434)
+++.+ .++..+...++++++|+..+...|+.+.+ +|+.+|++.++++.+|++|++ ++|+.. ...+++||
T Consensus 83 ~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~------~~g~~~~~~~~~lvv 155 (335)
T PRK13929 83 QIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAAAI------GADLPVDEPVANVVV 155 (335)
T ss_pred HHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHH------hcCCCcCCCceEEEE
Confidence 99973 56766767899999999999999999988 999999999999999999999 665332 24578999
Q ss_pred ecCCCceEEEec-cCceecccccEEecccHHHHHHHHHHHHhhcCCCCCChHHHHHHHHhhcccccccHHHHHHHHHhcC
Q 013888 157 DCGFSFTHAAPV-FQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRG 235 (434)
Q Consensus 157 DiG~~~t~v~pV-~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~c~v~~~~~~~~~~~~~~~ 235 (434)
|+|++.|++++| ++|..... .+++||+++++.|.+.+..+ +++..+...++++|+++|++..++..+
T Consensus 156 DiG~gtt~v~vi~~~~~~~~~---~~~~GG~~id~~l~~~l~~~-~~~~~~~~~AE~iK~~l~~~~~~~~~~-------- 223 (335)
T PRK13929 156 DIGGGTTEVAIISFGGVVSCH---SIRIGGDQLDEDIVSFVRKK-YNLLIGERTAEQVKMEIGYALIEHEPE-------- 223 (335)
T ss_pred EeCCCeEEEEEEEeCCEEEec---CcCCHHHHHHHHHHHHHHHH-hCcCcCHHHHHHHHHHHcCCCCCCCCc--------
Confidence 999999999999 55554433 36899999999999988753 233334568999999999986532111
Q ss_pred CCCceeEeeeCCCCcccccccccChhhHhhhhccCCCCCCCCCccccccchhHHHHHHHhhhhccCCccEEEccCcccc-
Q 013888 236 KDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFL- 314 (434)
Q Consensus 236 ~~~~~~~~~~lpd~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~er~~- 314 (434)
.+.++.... .......+.++.++|.
T Consensus 224 -------~~~v~g~~~-----------------------------------------------~~~~p~~i~i~~~~~~~ 249 (335)
T PRK13929 224 -------TMEVRGRDL-----------------------------------------------VTGLPKTITLESKEIQG 249 (335)
T ss_pred -------eEEEeCCcc-----------------------------------------------CCCCCeEEEEcHHHHHH
Confidence 011100000 0000115667766665
Q ss_pred -CCccccCCCCCCCCCCCHHHHHHHHHHhcChhhHHHhHc-CeEEecCCCCCcChHHHHHHhhcccCCCCceEEEecCCC
Q 013888 315 -VPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYE-SIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQED 392 (434)
Q Consensus 315 -~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~-nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~~ 392 (434)
++|.+|+ |.++|.++|.+|+++++..+++ +|+||||+|++|||.+||++++.. ++ ....+
T Consensus 250 ~i~~~l~~----------i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~------~v--~~~~~ 311 (335)
T PRK13929 250 AMRESLLH----------ILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVV------PV--HVAAN 311 (335)
T ss_pred HHHHHHHH----------HHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCC------Cc--eeCCC
Confidence 4666665 8999999999999999999998 699999999999999999999952 23 33467
Q ss_pred CCccccchhhhh
Q 013888 393 PLLGVWRGGSLL 404 (434)
Q Consensus 393 ~~~~~w~Gasil 404 (434)
|..++-.|+..+
T Consensus 312 P~~~Va~Ga~~~ 323 (335)
T PRK13929 312 PLESVAIGTGRS 323 (335)
T ss_pred HHHHHHHHHHHH
Confidence 888899997765
No 21
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.96 E-value=6.2e-30 Score=243.78 Aligned_cols=315 Identities=17% Similarity=0.193 Sum_probs=221.6
Q ss_pred CCeEEEEcCCcceEEeecCCCCCCeeeecCceeeCCCCc-eecCcccccccccccccceeecccCCCcccChHHHHHHHH
Q 013888 2 SNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKK-FIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDIWA 80 (434)
Q Consensus 2 ~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~~~-~~~g~~~~~~~~~d~~~~~~~~p~~~g~i~~~d~~e~il~ 80 (434)
++-|-||+||.++++ |..+..=.+..||+++.+....+ ..+|+++..+..+.+..+.+.+|+++|+|.|++..+.+++
T Consensus 1 ~~~igIDLGT~~t~i-~~~~~Giv~~epSvVA~~~~~~~i~avG~~A~~m~gktp~~i~~~~Pl~~GvI~D~~~~~~~l~ 79 (326)
T PF06723_consen 1 SKDIGIDLGTSNTRI-YVKGKGIVLNEPSVVAYDKDTGKILAVGDEAKAMLGKTPDNIEVVRPLKDGVIADYEAAEEMLR 79 (326)
T ss_dssp -SEEEEEE-SSEEEE-EETTTEEEEEEES-EEEETTT--EEEESHHHHTTTTS-GTTEEEE-SEETTEESSHHHHHHHHH
T ss_pred CCceEEecCcccEEE-EECCCCEEEecCcEEEEECCCCeEEEEhHHHHHHhhcCCCccEEEccccCCcccCHHHHHHHHH
Confidence 356889999999999 55444434667999998876544 5689998744344456789999999999999999999999
Q ss_pred HHhhccCCCC-CCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCCCCCCcE-EEEec
Q 013888 81 HLFSSLLHIS-PSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCS-LVVDC 158 (434)
Q Consensus 81 ~~~~~~L~~~-~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~~tg-lVVDi 158 (434)
|++++..+-. .....+++..|.-.+.-.|+.+.+.+. ..|+.+++++++|+++++ ++|+......| +||||
T Consensus 80 ~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~-~aGa~~V~li~ep~AaAi------GaGl~i~~~~g~miVDI 152 (326)
T PF06723_consen 80 YFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAAR-QAGARKVYLIEEPIAAAI------GAGLDIFEPRGSMIVDI 152 (326)
T ss_dssp HHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHH-HTT-SEEEEEEHHHHHHH------HTT--TTSSS-EEEEEE
T ss_pred HHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEecchHHHHh------cCCCCCCCCCceEEEEE
Confidence 9999876642 345679999999999999999988775 589999999999999999 88866655555 89999
Q ss_pred CCCceEEEeccCceecccccEEecccHHHHHHHHHHHHhhcCCCCCChHHHHHHHHhhcccccccHHHHHHHHHhcCCCC
Q 013888 159 GFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKDN 238 (434)
Q Consensus 159 G~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~c~v~~~~~~~~~~~~~~~~~~ 238 (434)
|++.|.++-+..|-++.+ ..+++||+++++.+.+.+++++ ++......++++|++++++....++. ...
T Consensus 153 G~GtTdiavislggiv~s--~si~~gG~~~DeaI~~~ir~~y-~l~Ig~~tAE~iK~~~g~~~~~~~~~--~~~------ 221 (326)
T PF06723_consen 153 GGGTTDIAVISLGGIVAS--RSIRIGGDDIDEAIIRYIREKY-NLLIGERTAEKIKIEIGSASPPEEEE--SME------ 221 (326)
T ss_dssp -SS-EEEEEEETTEEEEE--EEES-SHHHHHHHHHHHHHHHH-SEE--HHHHHHHHHHH-BSS--HHHH--EEE------
T ss_pred CCCeEEEEEEECCCEEEE--EEEEecCcchhHHHHHHHHHhh-CcccCHHHHHHHHHhcceeeccCCCc--eEE------
Confidence 999999999999998774 5689999999999999998775 45567788999999998886432211 000
Q ss_pred ceeEeeeCCCCcccccccccChhhHhhhhccCCCCCCCCCccccccchhHHHHHHHhhhhccCCccEEEcc-CccccCCc
Q 013888 239 LLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLT-NERFLVPE 317 (434)
Q Consensus 239 ~~~~~~~lpd~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~-~er~~~~E 317 (434)
..-..+-+|. ...+.++ .+-..+.+
T Consensus 222 --v~Grd~~tGl----------------------------------------------------P~~~~i~~~ev~~ai~ 247 (326)
T PF06723_consen 222 --VRGRDLITGL----------------------------------------------------PKSIEITSSEVREAIE 247 (326)
T ss_dssp --EEEEETTTTC----------------------------------------------------EEEEEEEHHHHHHHHH
T ss_pred --EECccccCCC----------------------------------------------------cEEEEEcHHHHHHHHH
Confidence 0000111111 1134443 23223333
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHHhcChhhHHHhHcC-eEEecCCCCCcChHHHHHHhhcccCCCCceEEEecCCCCCcc
Q 013888 318 MIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYES-IILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEDPLLG 396 (434)
Q Consensus 318 ~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~n-IiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~~~~~~ 396 (434)
..++ .|.++|.+++.++|+++..++++| |+||||+|+++|+.++|++++. +.|..+++|.++
T Consensus 248 ~~~~---------~I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~--------~pV~va~~P~~~ 310 (326)
T PF06723_consen 248 PPVD---------QIVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEETG--------VPVRVADDPLTA 310 (326)
T ss_dssp HHHH---------HHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHS--------S-EEE-SSTTTH
T ss_pred HHHH---------HHHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHC--------CCEEEcCCHHHH
Confidence 3232 489999999999999999887755 9999999999999999999994 456667789999
Q ss_pred ccchhhhhcC
Q 013888 397 VWRGGSLLAS 406 (434)
Q Consensus 397 ~w~Gasila~ 406 (434)
+-.|+..+..
T Consensus 311 va~G~~~~l~ 320 (326)
T PF06723_consen 311 VARGAGKLLE 320 (326)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHHh
Confidence 9999877653
No 22
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.96 E-value=2.7e-29 Score=245.15 Aligned_cols=315 Identities=15% Similarity=0.178 Sum_probs=225.8
Q ss_pred CeEEEEcCCcceEEeecCCCCCCeeeecCceeeCCC-CceecCcccccccccccccceeecccCCCcccChHHHHHHHHH
Q 013888 3 NIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSS-KKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDIWAH 81 (434)
Q Consensus 3 ~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~-~~~~~g~~~~~~~~~d~~~~~~~~p~~~g~i~~~d~~e~il~~ 81 (434)
..+-||+|+.++++-..++ .-.+..||+++..... +.+.+|+++..+..+.+.+..+.+|+.+|.|.|||.++.+|+|
T Consensus 4 ~~~gIDlGt~~~~i~~~~~-~~v~~~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~~pi~~G~i~d~~~~~~~l~~ 82 (336)
T PRK13928 4 RDIGIDLGTANVLVYVKGK-GIVLNEPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAIRPLRDGVIADYDVTEKMLKY 82 (336)
T ss_pred ceeEEEcccccEEEEECCC-CEEEccCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEEccCCCCeEecHHHHHHHHHH
Confidence 3488999999999955533 2334568988877543 3457899987322133456778899999999999999999999
Q ss_pred HhhccCCCCCCCCc-EEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCCC-CCCcEEEEecC
Q 013888 82 LFSSLLHISPSASS-LLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLS-ETQCSLVVDCG 159 (434)
Q Consensus 82 ~~~~~L~~~~~~~~-vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~-~~~tglVVDiG 159 (434)
++.+.....+.++| +++++|...+ ..+++.++.+|+..|++.+.++++|++|++ ++|... ....++|||+|
T Consensus 83 ~~~~~~~~~~~~~p~~vitvP~~~~-~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~------~~g~~~~~~~~~lVvDiG 155 (336)
T PRK13928 83 FINKACGKRFFSKPRIMICIPTGIT-SVEKRAVREAAEQAGAKKVYLIEEPLAAAI------GAGLDISQPSGNMVVDIG 155 (336)
T ss_pred HHHHHhccCCCCCCeEEEEeCCCCC-HHHHHHHHHHHHHcCCCceEecccHHHHHH------HcCCcccCCCeEEEEEeC
Confidence 99653333355677 8888866655 456667788899999999999999999999 666321 12567999999
Q ss_pred CCceEEEeccCceecccccEEecccHHHHHHHHHHHHhhcCCCCCChHHHHHHHHhhcccccccHHHHHHHHHhcCCCCc
Q 013888 160 FSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKDNL 239 (434)
Q Consensus 160 ~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~c~v~~~~~~~~~~~~~~~~~~~ 239 (434)
++.|++++|..|.++... .+++||+++|+.|.+.+..++ .+......++++|+.+|++..+...
T Consensus 156 ggttdvsvv~~g~~~~~~--~~~lGG~did~~i~~~l~~~~-~~~~~~~~ae~lK~~~~~~~~~~~~------------- 219 (336)
T PRK13928 156 GGTTDIAVLSLGGIVTSS--SIKVAGDKFDEAIIRYIRKKY-KLLIGERTAEEIKIKIGTAFPGARE------------- 219 (336)
T ss_pred CCeEEEEEEEeCCEEEeC--CcCCHHHHHHHHHHHHHHHHh-chhcCHHHHHHHHHHhcccccccCC-------------
Confidence 999999999999776643 579999999999999887442 3233445689999998876432100
Q ss_pred eeEeeeCCCCcccccccccChhhHhhhhccCCCCCCCCCccccccchhHHHHHHHhhhhccCCccEEEccCccccCCccc
Q 013888 240 LRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLVPEMI 319 (434)
Q Consensus 240 ~~~~~~lpd~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~er~~~~E~l 319 (434)
....+..... . .+....+.+..+++. |++
T Consensus 220 --~~~~v~g~~~-----~------------------------------------------~~~~~~~~i~~~~~~--eii 248 (336)
T PRK13928 220 --EEMEIRGRDL-----V------------------------------------------TGLPKTITVTSEEIR--EAL 248 (336)
T ss_pred --cEEEEecccc-----c------------------------------------------CCCceEEEECHHHHH--HHH
Confidence 0111100000 0 000013445544443 454
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhcChhhHHHhHc-CeEEecCCCCCcChHHHHHHhhcccCCCCceEEEecCCCCCcccc
Q 013888 320 FQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYE-SIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVW 398 (434)
Q Consensus 320 F~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~-nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~~~~~~~w 398 (434)
+.+- ..+.+.|.+++.+++.+++..+++ +|+||||+|++||+.++|++++.. + +....+|..++-
T Consensus 249 ~~~~------~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~------~--v~~~~~P~~ava 314 (336)
T PRK13928 249 KEPV------SAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKV------P--VYIAEDPISCVA 314 (336)
T ss_pred HHHH------HHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCC------C--ceecCCHHHHHH
Confidence 4431 368889999999999988888887 799999999999999999999952 2 333457889999
Q ss_pred chhhhhcC
Q 013888 399 RGGSLLAS 406 (434)
Q Consensus 399 ~Gasila~ 406 (434)
+||++++.
T Consensus 315 ~Gaa~~~~ 322 (336)
T PRK13928 315 LGTGKMLE 322 (336)
T ss_pred HHHHHHHh
Confidence 99998863
No 23
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.86 E-value=1.7e-21 Score=179.29 Aligned_cols=317 Identities=17% Similarity=0.200 Sum_probs=228.1
Q ss_pred CCeEEEEcCCcceEEeecCCCCCCeeeecCceeeC--CCC-ceecCcccccccccccccceeecccCCCcccChHHHHHH
Q 013888 2 SNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPL--SSK-KFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDI 78 (434)
Q Consensus 2 ~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~--~~~-~~~~g~~~~~~~~~d~~~~~~~~p~~~g~i~~~d~~e~i 78 (434)
++.|=||+|+.+|++ |..+..--...||+++... +.. -..+|+++..+--+.+.+....+|+++|+|.|++..+.+
T Consensus 6 s~diGIDLGTanTlV-~~k~kgIVl~ePSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~aiRPmkdGVIAd~~~te~m 84 (342)
T COG1077 6 SNDIGIDLGTANTLV-YVKGKGIVLNEPSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFEVTELM 84 (342)
T ss_pred cccceeeecccceEE-EEcCceEEecCceEEEEeecCCCceEEEehHHHHHHhccCCCCceEEeecCCcEeecHHHHHHH
Confidence 457889999999999 5554443455689988665 232 356899998443355678899999999999999999999
Q ss_pred HHHHhhccCCCCC--CCCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCCCCCCc-EEE
Q 013888 79 WAHLFSSLLHISP--SASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQC-SLV 155 (434)
Q Consensus 79 l~~~~~~~L~~~~--~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~~t-glV 155 (434)
++|+.++..+-.. ..-.+++..|.-.+.-.|+.+-|.+ ++-+...++++++|++|++ ++|+.....+ .+|
T Consensus 85 l~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~-~~aGa~~V~lieEp~aAAI------Gaglpi~ep~G~mv 157 (342)
T COG1077 85 LKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAA-ESAGAREVYLIEEPMAAAI------GAGLPIMEPTGSMV 157 (342)
T ss_pred HHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHH-HhccCceEEEeccHHHHHh------cCCCcccCCCCCEE
Confidence 9999986543232 3335777888888887888776666 5568999999999999999 7777766777 599
Q ss_pred EecCCCceEEEeccCceecccccEEecccHHHHHHHHHHHHhhcCCCCCChHHHHHHHHhhcccccccHHHHHHHHHhcC
Q 013888 156 VDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRG 235 (434)
Q Consensus 156 VDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~c~v~~~~~~~~~~~~~~~ 235 (434)
||||.+.|.|.-+..|-++... ++-+||+.+++-+-..++++ +++..-....++||.+..++..+...+....
T Consensus 158 vDIGgGTTevaVISlggiv~~~--Sirv~GD~~De~Ii~yvr~~-~nl~IGe~taE~iK~eiG~a~~~~~~~~~~~---- 230 (342)
T COG1077 158 VDIGGGTTEVAVISLGGIVSSS--SVRVGGDKMDEAIIVYVRKK-YNLLIGERTAEKIKIEIGSAYPEEEDEELEM---- 230 (342)
T ss_pred EEeCCCceeEEEEEecCEEEEe--eEEEecchhhHHHHHHHHHH-hCeeecHHHHHHHHHHhcccccccCCcccee----
Confidence 9999999999999887777654 35699999999999888765 3444455679999999888865321110000
Q ss_pred CCCceeEeeeCCCCcccccccccChhhHhhhhccCCCCCCCCCccccccchhHHHHHHHhhhhccCCccEEEccCccccC
Q 013888 236 KDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLV 315 (434)
Q Consensus 236 ~~~~~~~~~~lpd~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~er~~~ 315 (434)
..+--.+-.|. ...+.+..+. +
T Consensus 231 ----eV~Grdl~~Gl----------------------------------------------------Pk~i~i~s~e--v 252 (342)
T COG1077 231 ----EVRGRDLVTGL----------------------------------------------------PKTITINSEE--I 252 (342)
T ss_pred ----eEEeeecccCC----------------------------------------------------CeeEEEcHHH--H
Confidence 00000000010 1133333221 1
Q ss_pred CccccCCCCCCCCCCCHHHHHHHHHHhcChhhHHHhHcC-eEEecCCCCCcChHHHHHHhhcccCCCCceEEEecCCCCC
Q 013888 316 PEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYES-IILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEDPL 394 (434)
Q Consensus 316 ~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~n-IiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~~~~ 394 (434)
.|.|=.| -..|.++|...+.+||+++-...+++ |++|||+|+++|+.++|.+|.. +.|...++|.
T Consensus 253 ~eal~~~------v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~--------~pv~ia~~pL 318 (342)
T COG1077 253 AEALEEP------LNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETG--------VPVIIADDPL 318 (342)
T ss_pred HHHHHHH------HHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccC--------CeEEECCChH
Confidence 1222111 13688999999999999999999999 9999999999999999999873 4455577888
Q ss_pred ccccchhhhhc
Q 013888 395 LGVWRGGSLLA 405 (434)
Q Consensus 395 ~~~w~Gasila 405 (434)
..+-+|+.+..
T Consensus 319 ~~Va~G~G~~l 329 (342)
T COG1077 319 TCVAKGTGKAL 329 (342)
T ss_pred HHHHhccchhh
Confidence 88888876654
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.66 E-value=3.6e-15 Score=138.01 Aligned_cols=135 Identities=15% Similarity=0.065 Sum_probs=105.7
Q ss_pred ecccCCCcccChHHHHHHHHHHhhc---cCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeecccccccccc
Q 013888 61 RRPIDRGYLINSDLQRDIWAHLFSS---LLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLY 137 (434)
Q Consensus 61 ~~p~~~g~i~~~d~~e~il~~~~~~---~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~ 137 (434)
..|+.+|.|.|++..+.+++++..+ .++ ..-..++++.|.......|+.+.+ .++.-|+.-+.+..++++++.
T Consensus 28 ~~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g--~~~~~vvisVP~~~~~~~r~a~~~-a~~~aGl~~~~li~ep~Aaa~- 103 (239)
T TIGR02529 28 ADVVRDGIVVDFLGAVEIVRRLKDTLEQKLG--IELTHAATAIPPGTIEGDPKVIVN-VIESAGIEVLHVLDEPTAAAA- 103 (239)
T ss_pred cccccCCeEEEhHHHHHHHHHHHHHHHHHhC--CCcCcEEEEECCCCCcccHHHHHH-HHHHcCCceEEEeehHHHHHH-
Confidence 4689999999999999999999852 333 234688899998888877877654 456679999999999999998
Q ss_pred ccccCCCCCCCCCCcEEEEecCCCceEEEeccCceecccccEEecccHHHHHHHHHHHHhhcCCCCCChHHHHHHHHhhc
Q 013888 138 EASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKL 217 (434)
Q Consensus 138 ~~~~~~~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~ 217 (434)
+++ ....+|||+|++.|+++-+.+|.++. ....++||+++++.+.+.+. .+...++.+|...
T Consensus 104 -----~~~----~~~~~vvDiGggtt~i~i~~~G~i~~--~~~~~~GG~~it~~Ia~~~~-------i~~~~AE~~K~~~ 165 (239)
T TIGR02529 104 -----VLQ----IKNGAVVDVGGGTTGISILKKGKVIY--SADEPTGGTHMSLVLAGAYG-------ISFEEAEEYKRGH 165 (239)
T ss_pred -----Hhc----CCCcEEEEeCCCcEEEEEEECCeEEE--EEeeecchHHHHHHHHHHhC-------CCHHHHHHHHHhc
Confidence 555 44579999999999999999998776 45679999999998876553 2345577777653
No 25
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.60 E-value=6.3e-14 Score=131.96 Aligned_cols=163 Identities=17% Similarity=0.041 Sum_probs=117.3
Q ss_pred eEEEEcCCcceEEeecCCCCCCeeeecCceeeCCCCceecCcccccccccccccceeecccCCCcccChHHHHHHHHHHh
Q 013888 4 IVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDIWAHLF 83 (434)
Q Consensus 4 ~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~p~~~g~i~~~d~~e~il~~~~ 83 (434)
.++||+||..+|+=.+ +..+. . ++ +|+ ..+.++++|.+.|++.....++++.
T Consensus 26 ~~~iDiGSssi~~vv~-~~~~~-~----~~---------~~~-------------~~~~~vr~G~i~di~~a~~~i~~~~ 77 (267)
T PRK15080 26 KVGVDLGTANIVLAVL-DEDGQ-P----VA---------GAL-------------EWADVVRDGIVVDFIGAVTIVRRLK 77 (267)
T ss_pred EEEEEccCceEEEEEE-cCCCC-E----EE---------EEe-------------ccccccCCCEEeeHHHHHHHHHHHH
Confidence 5899999999997443 32222 0 11 111 2346799999999999999998887
Q ss_pred hc---cCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCCCCCCcEEEEecCC
Q 013888 84 SS---LLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGF 160 (434)
Q Consensus 84 ~~---~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~~tglVVDiG~ 160 (434)
.. .++.+ -..++++.|.......+..+. -..+.-|+.-..++.++.+++. +.+ ...++|||||+
T Consensus 78 ~~ae~~~g~~--i~~v~~~vp~~~~~~~~~~~~-~~~~~aGl~~~~ii~e~~A~a~------~~~----~~~~~vvDIGg 144 (267)
T PRK15080 78 ATLEEKLGRE--LTHAATAIPPGTSEGDPRAII-NVVESAGLEVTHVLDEPTAAAA------VLG----IDNGAVVDIGG 144 (267)
T ss_pred HHHHHHhCCC--cCeEEEEeCCCCCchhHHHHH-HHHHHcCCceEEEechHHHHHH------HhC----CCCcEEEEeCC
Confidence 62 34443 245666788777666666655 6667889998888899988887 544 34579999999
Q ss_pred CceEEEeccCceecccccEEecccHHHHHHHHHHHHhhcCCCCCChHHHHHHHHhh
Q 013888 161 SFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEK 216 (434)
Q Consensus 161 ~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~ 216 (434)
+.|+++-+.+|.++.. ...++||+++|+.+.+.+. .+...++.+|..
T Consensus 145 gtt~i~v~~~g~~~~~--~~~~~GG~~it~~Ia~~l~-------i~~~eAE~lK~~ 191 (267)
T PRK15080 145 GTTGISILKDGKVVYS--ADEPTGGTHMSLVLAGAYG-------ISFEEAEQYKRD 191 (267)
T ss_pred CcEEEEEEECCeEEEE--ecccCchHHHHHHHHHHhC-------CCHHHHHHHHhc
Confidence 9999999999988764 4679999999999886653 233446666655
No 26
>CHL00094 dnaK heat shock protein 70
Probab=99.44 E-value=3.9e-12 Score=133.87 Aligned_cols=188 Identities=18% Similarity=0.163 Sum_probs=116.7
Q ss_pred CCCeEEEEcCCcceEEeecCCCCCCe--------eeecCceeeCCCCceecCcccccccccccc----------------
Q 013888 1 MSNIVVLDNGGGLIKAGHGGERDPAV--------TIPNCMYRPLSSKKFIHPSPTAASATEDLT---------------- 56 (434)
Q Consensus 1 ~~~~vViD~Gs~~~k~G~ag~~~P~~--------~~ps~~~~~~~~~~~~~g~~~~~~~~~d~~---------------- 56 (434)
|+.+|-||+|+.++++++..+..|.. .+||+++...+ ...++|+.+......++.
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~-~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~ 79 (621)
T CHL00094 1 MGKVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKK-GDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE 79 (621)
T ss_pred CCceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCC-CCEEECHHHHHhHHhCccceehhhHHhcCCChHH
Confidence 77889999999999999986666642 34666665322 234567654311000000
Q ss_pred --------ccee----------ecccCCCcccChHHHHHHHHHHhh---ccCCCCCCCCcEEEeccCCCCHHHHHHHHHH
Q 013888 57 --------SAAV----------RRPIDRGYLINSDLQRDIWAHLFS---SLLHISPSASSLLLTEPLFALPSIQRATDEL 115 (434)
Q Consensus 57 --------~~~~----------~~p~~~g~i~~~d~~e~il~~~~~---~~L~~~~~~~~vll~e~~~~~~~~re~l~e~ 115 (434)
.+.+ ..+.....+...+....+++++.. ..++. .-..++++.|.+.....|+.+.+.
T Consensus 80 ~~~~~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~--~v~~~VItVPa~f~~~qR~a~~~A 157 (621)
T CHL00094 80 ISEEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGE--TVTQAVITVPAYFNDSQRQATKDA 157 (621)
T ss_pred HHhhhhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHHHHHHHH
Confidence 0000 011111122223444556666553 23332 224688899999988888877554
Q ss_pred HhhhcCCceeeeccccccccccccccCCCCCCC-CCCcEEEEecCCCceEEEeccCceec---ccccEEecccHHHHHHH
Q 013888 116 VFEDFNFKSLFVADPPSLVHLYEASRRPYGLLS-ETQCSLVVDCGFSFTHAAPVFQNFTV---NYAVKRIDLGGKALTNY 191 (434)
Q Consensus 116 lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~-~~~tglVVDiG~~~t~v~pV~dG~~~---~~~~~~~~~GG~~l~~~ 191 (434)
.+.-|+.-+.++++|.+|++ ++|... ....-+|+|+|+++++|+-+.-+... ..+....++||+++++.
T Consensus 158 -a~~AGl~v~~li~EptAAAl------ay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~ 230 (621)
T CHL00094 158 -GKIAGLEVLRIINEPTAASL------AYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKK 230 (621)
T ss_pred -HHHcCCceEEEeccHHHHHH------HhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHH
Confidence 46789999999999999999 444221 13467999999999999887544221 22233468999999998
Q ss_pred HHHHHhh
Q 013888 192 LKELVSY 198 (434)
Q Consensus 192 l~~ll~~ 198 (434)
|.+.+..
T Consensus 231 l~~~~~~ 237 (621)
T CHL00094 231 IVNWLIK 237 (621)
T ss_pred HHHHHHH
Confidence 8876643
No 27
>PRK13411 molecular chaperone DnaK; Provisional
Probab=99.40 E-value=8.3e-12 Score=131.78 Aligned_cols=188 Identities=18% Similarity=0.173 Sum_probs=114.6
Q ss_pred CCCeEEEEcCCcceEEeecCCCCCCee--------eecCceeeCCCCceecCcccccccccccc--ccee----------
Q 013888 1 MSNIVVLDNGGGLIKAGHGGERDPAVT--------IPNCMYRPLSSKKFIHPSPTAASATEDLT--SAAV---------- 60 (434)
Q Consensus 1 ~~~~vViD~Gs~~~k~G~ag~~~P~~~--------~ps~~~~~~~~~~~~~g~~~~~~~~~d~~--~~~~---------- 60 (434)
|+.+|-||+|+.++.+++..+..|..+ +||+++...+. ..++|..+......++. -+.+
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~-~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d 79 (653)
T PRK13411 1 MGKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSG-DRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDD 79 (653)
T ss_pred CCcEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCC-CEEEcHHHHHhhhhCcccchHHHHHHhCCCccc
Confidence 778899999999999998766555533 47777764332 34577665411000000 0000
Q ss_pred ------eccc-----CCC--------cccChH-HHHHHHHHHhh---ccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHh
Q 013888 61 ------RRPI-----DRG--------YLINSD-LQRDIWAHLFS---SLLHISPSASSLLLTEPLFALPSIQRATDELVF 117 (434)
Q Consensus 61 ------~~p~-----~~g--------~i~~~d-~~e~il~~~~~---~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lf 117 (434)
++|+ .+| .....+ ....+|.++.. ++++. .-..++++.|.+++...|+.+.+ ..
T Consensus 80 ~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~peei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR~a~~~-Aa 156 (653)
T PRK13411 80 TEEERSRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMILQKLKQDAEAYLGE--PVTQAVITVPAYFTDAQRQATKD-AG 156 (653)
T ss_pred hhHHhhcCCceEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCcHHHHHHHH-HH
Confidence 1111 111 111222 22333444432 23442 23568999999999988887755 55
Q ss_pred hhcCCceeeeccccccccccccccCCCCCC--CCCCcEEEEecCCCceEEEecc--Ccee-cccccEEecccHHHHHHHH
Q 013888 118 EDFNFKSLFVADPPSLVHLYEASRRPYGLL--SETQCSLVVDCGFSFTHAAPVF--QNFT-VNYAVKRIDLGGKALTNYL 192 (434)
Q Consensus 118 E~~~~~~v~~~~~~~ls~~~~~~~~~~g~~--~~~~tglVVDiG~~~t~v~pV~--dG~~-~~~~~~~~~~GG~~l~~~l 192 (434)
+.-|+.-+.++++|.+|++ ++|.. ....+-+|+|+|+++++|+-+. +|.. +..+.....+||.++++.|
T Consensus 157 ~~AGl~v~~li~EPtAAAl------~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l 230 (653)
T PRK13411 157 TIAGLEVLRIINEPTAAAL------AYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCI 230 (653)
T ss_pred HHcCCCeEEEecchHHHHH------HhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHH
Confidence 7789999999999999998 44421 1134579999999999887553 2221 2222223579999999988
Q ss_pred HHHHhh
Q 013888 193 KELVSY 198 (434)
Q Consensus 193 ~~ll~~ 198 (434)
.+.+..
T Consensus 231 ~~~l~~ 236 (653)
T PRK13411 231 VDWLVE 236 (653)
T ss_pred HHHHHH
Confidence 877653
No 28
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=99.37 E-value=2.4e-11 Score=128.44 Aligned_cols=187 Identities=16% Similarity=0.125 Sum_probs=114.5
Q ss_pred CCeEEEEcCCcceEEeecCCCCCC--------eeeecCceeeCCCCceecCcccccccccccc--ccee-----------
Q 013888 2 SNIVVLDNGGGLIKAGHGGERDPA--------VTIPNCMYRPLSSKKFIHPSPTAASATEDLT--SAAV----------- 60 (434)
Q Consensus 2 ~~~vViD~Gs~~~k~G~ag~~~P~--------~~~ps~~~~~~~~~~~~~g~~~~~~~~~d~~--~~~~----------- 60 (434)
..+|-||+|+.++++++..+..|. ..+||+++...+. ..++|+.+......++. -+.+
T Consensus 41 ~~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~-~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 119 (663)
T PTZ00400 41 GDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDG-QRLVGIVAKRQAVTNPENTVFATKRLIGRRYDED 119 (663)
T ss_pred CcEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCC-CEEECHHHHHhHHhCCcceehhhhhhcCCCcCcH
Confidence 467899999999999987554433 2357777654322 34567665411000000 0000
Q ss_pred -------eccc-----CC--------CcccChH-HHHHHHHHHhh---ccCCCCCCCCcEEEeccCCCCHHHHHHHHHHH
Q 013888 61 -------RRPI-----DR--------GYLINSD-LQRDIWAHLFS---SLLHISPSASSLLLTEPLFALPSIQRATDELV 116 (434)
Q Consensus 61 -------~~p~-----~~--------g~i~~~d-~~e~il~~~~~---~~L~~~~~~~~vll~e~~~~~~~~re~l~e~l 116 (434)
.+|+ .+ |.....+ ....+|.++.. ++++. .-..++++.|.++....|+.+.+ .
T Consensus 120 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~speel~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR~a~~~-A 196 (663)
T PTZ00400 120 ATKKEQKILPYKIVRASNGDAWIEAQGKKYSPSQIGAFVLEKMKETAESYLGR--KVKQAVITVPAYFNDSQRQATKD-A 196 (663)
T ss_pred HHHhhhccCCeEEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCC--CCceEEEEECCCCCHHHHHHHHH-H
Confidence 1121 11 1111222 23334444332 23442 23579999999999988887754 5
Q ss_pred hhhcCCceeeeccccccccccccccCCCCCCC-CCCcEEEEecCCCceEEEecc--Ccee-cccccEEecccHHHHHHHH
Q 013888 117 FEDFNFKSLFVADPPSLVHLYEASRRPYGLLS-ETQCSLVVDCGFSFTHAAPVF--QNFT-VNYAVKRIDLGGKALTNYL 192 (434)
Q Consensus 117 fE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~-~~~tglVVDiG~~~t~v~pV~--dG~~-~~~~~~~~~~GG~~l~~~l 192 (434)
.+.-|++-+.++.+|.+|++ ++|... ....-+|+|+|+++++|+-+. +|.. +..+....++||.++++.|
T Consensus 197 a~~AGl~v~~li~EptAAAl------ay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l 270 (663)
T PTZ00400 197 GKIAGLDVLRIINEPTAAAL------AFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRI 270 (663)
T ss_pred HHHcCCceEEEeCchHHHHH------HhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHH
Confidence 57789999999999999999 444221 134679999999999998764 5533 2222334689999999999
Q ss_pred HHHHhh
Q 013888 193 KELVSY 198 (434)
Q Consensus 193 ~~ll~~ 198 (434)
.+.+..
T Consensus 271 ~~~l~~ 276 (663)
T PTZ00400 271 LNYLIA 276 (663)
T ss_pred HHHHHH
Confidence 877654
No 29
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=99.37 E-value=2.7e-11 Score=127.87 Aligned_cols=188 Identities=17% Similarity=0.152 Sum_probs=115.3
Q ss_pred CCCeEEEEcCCcceEEeecCCCCCC--------eeeecCceeeCCCCceecCccccccccccccc--cee----------
Q 013888 1 MSNIVVLDNGGGLIKAGHGGERDPA--------VTIPNCMYRPLSSKKFIHPSPTAASATEDLTS--AAV---------- 60 (434)
Q Consensus 1 ~~~~vViD~Gs~~~k~G~ag~~~P~--------~~~ps~~~~~~~~~~~~~g~~~~~~~~~d~~~--~~~---------- 60 (434)
|+.+|-||+|+.++++++..+..|. ..+||+++...+ +..++|+.+.......+.+ +.+
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~-~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~~ 79 (627)
T PRK00290 1 MGKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKD-GERLVGQPAKRQAVTNPENTIFSIKRLMGRRDEE 79 (627)
T ss_pred CCcEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCC-CCEEEcHHHHHhhhhCchhhHHHHHHHhCCCchH
Confidence 7788999999999999998655553 235777766432 2456787664210000000 000
Q ss_pred ------ecccC-------------CCcccCh-HHHHHHHHHHhh---ccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHh
Q 013888 61 ------RRPID-------------RGYLINS-DLQRDIWAHLFS---SLLHISPSASSLLLTEPLFALPSIQRATDELVF 117 (434)
Q Consensus 61 ------~~p~~-------------~g~i~~~-d~~e~il~~~~~---~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lf 117 (434)
.+|++ .|..... +....+|+++.. +.++.+ -..++++.|.++....|+.+. -..
T Consensus 80 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~--v~~~VItVPa~f~~~qR~a~~-~Aa 156 (627)
T PRK00290 80 VQKDIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMILQKLKKDAEDYLGEK--VTEAVITVPAYFNDAQRQATK-DAG 156 (627)
T ss_pred HHHHhhcCCeEEEEcCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCC--CceEEEEECCCCCHHHHHHHH-HHH
Confidence 01110 1221222 223344444432 233322 256899999999988888774 445
Q ss_pred hhcCCceeeeccccccccccccccCCCCCCC-CCCcEEEEecCCCceEEEeccCce--e-cccccEEecccHHHHHHHHH
Q 013888 118 EDFNFKSLFVADPPSLVHLYEASRRPYGLLS-ETQCSLVVDCGFSFTHAAPVFQNF--T-VNYAVKRIDLGGKALTNYLK 193 (434)
Q Consensus 118 E~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~-~~~tglVVDiG~~~t~v~pV~dG~--~-~~~~~~~~~~GG~~l~~~l~ 193 (434)
+..|+.-+.++++|.+|++ ++|... ...+-+|+|+|+++++|+-+.-+- . +..+....++||.+++..|.
T Consensus 157 ~~AGl~v~~li~EptAAAl------~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~ 230 (627)
T PRK00290 157 KIAGLEVLRIINEPTAAAL------AYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRII 230 (627)
T ss_pred HHcCCceEEEecchHHHHH------HhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHH
Confidence 6789999999999999998 333211 246789999999999887764431 1 12222335899999999988
Q ss_pred HHHhh
Q 013888 194 ELVSY 198 (434)
Q Consensus 194 ~ll~~ 198 (434)
+.+..
T Consensus 231 ~~~~~ 235 (627)
T PRK00290 231 DYLAD 235 (627)
T ss_pred HHHHH
Confidence 77653
No 30
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=99.34 E-value=2.1e-11 Score=127.61 Aligned_cols=186 Identities=17% Similarity=0.134 Sum_probs=115.4
Q ss_pred eEEEEcCCcceEEeecCCCCCCe--------eeecCceeeCCCCceecCccccccccccccc--ce--------------
Q 013888 4 IVVLDNGGGLIKAGHGGERDPAV--------TIPNCMYRPLSSKKFIHPSPTAASATEDLTS--AA-------------- 59 (434)
Q Consensus 4 ~vViD~Gs~~~k~G~ag~~~P~~--------~~ps~~~~~~~~~~~~~g~~~~~~~~~d~~~--~~-------------- 59 (434)
+|-||+|+.++.+++..+..|.. .+||+++...+ ...++|..|......++.. +.
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~-~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~ 79 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKD-GGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKT 79 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCC-CCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhh
Confidence 46799999999999876555442 35777776433 2456787664210000000 00
Q ss_pred -eeccc--------------CCCcccChHHHHHHHHHHhh---ccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcC
Q 013888 60 -VRRPI--------------DRGYLINSDLQRDIWAHLFS---SLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFN 121 (434)
Q Consensus 60 -~~~p~--------------~~g~i~~~d~~e~il~~~~~---~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~ 121 (434)
-.+|+ ..|.+.-.+....+|.++.. +.++.+ -..++++.|.++....|+.+.+. .+..|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ei~a~iL~~lk~~a~~~lg~~--v~~~VItVPa~f~~~qR~a~~~A-a~~AG 156 (599)
T TIGR01991 80 FSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRAEESLGGD--LVGAVITVPAYFDDAQRQATKDA-ARLAG 156 (599)
T ss_pred cccCCEEEEEcCCCceEEEeCCCEEcHHHHHHHHHHHHHHHHHHHhCCC--cceEEEEECCCCCHHHHHHHHHH-HHHcC
Confidence 00121 11222222344455555542 234422 35799999999999988887544 67889
Q ss_pred CceeeeccccccccccccccCCCCCCC-CCCcEEEEecCCCceEEEecc--Ccee-cccccEEecccHHHHHHHHHHHHh
Q 013888 122 FKSLFVADPPSLVHLYEASRRPYGLLS-ETQCSLVVDCGFSFTHAAPVF--QNFT-VNYAVKRIDLGGKALTNYLKELVS 197 (434)
Q Consensus 122 ~~~v~~~~~~~ls~~~~~~~~~~g~~~-~~~tglVVDiG~~~t~v~pV~--dG~~-~~~~~~~~~~GG~~l~~~l~~ll~ 197 (434)
+.-+.++++|.+|++ ++|... ...+-+|+|+|+++++|+-+. +|.. +..+.....+||.++++.|.+.+.
T Consensus 157 l~v~~li~EPtAAAl------ay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~ 230 (599)
T TIGR01991 157 LNVLRLLNEPTAAAV------AYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWIL 230 (599)
T ss_pred CCceEEecCHHHHHH------HHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 999999999999988 333211 245679999999999987664 3322 112222358999999999988776
Q ss_pred hc
Q 013888 198 YR 199 (434)
Q Consensus 198 ~~ 199 (434)
.+
T Consensus 231 ~~ 232 (599)
T TIGR01991 231 KQ 232 (599)
T ss_pred Hh
Confidence 44
No 31
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=99.33 E-value=2.3e-11 Score=127.83 Aligned_cols=185 Identities=18% Similarity=0.199 Sum_probs=112.3
Q ss_pred eEEEEcCCcceEEeecCCCCCCe--------eeecCceeeCCCCceecCccccccccccccc--cee-------------
Q 013888 4 IVVLDNGGGLIKAGHGGERDPAV--------TIPNCMYRPLSSKKFIHPSPTAASATEDLTS--AAV------------- 60 (434)
Q Consensus 4 ~vViD~Gs~~~k~G~ag~~~P~~--------~~ps~~~~~~~~~~~~~g~~~~~~~~~d~~~--~~~------------- 60 (434)
+|-||+|+.++++++..+..|.. .+||+++...+ ...++|+.|.......+.+ +.+
T Consensus 2 viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~-~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~~~~~ 80 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKN-GERLVGQPAKRQAVTNPENTIYSIKRFMGRRFDEVTE 80 (595)
T ss_pred EEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCC-CCEEECHHHHHhhhhCchhhhHHHHHHhCCCchHHHH
Confidence 57899999999999986665542 34677765433 2356787664210010000 000
Q ss_pred ---eccc----CC--------CcccCh-HHHHHHHHHHhh---ccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcC
Q 013888 61 ---RRPI----DR--------GYLINS-DLQRDIWAHLFS---SLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFN 121 (434)
Q Consensus 61 ---~~p~----~~--------g~i~~~-d~~e~il~~~~~---~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~ 121 (434)
.+|+ .+ |..... +....+|+++.. ..++. .-..++++.|.++....|+.+.+ ..+..|
T Consensus 81 ~~~~~~~~v~~~~~~~~~~v~~~~~~peel~a~~L~~l~~~a~~~~~~--~v~~~VItVPa~f~~~qR~a~~~-Aa~~AG 157 (595)
T TIGR02350 81 EAKRVPYKVVGDGGDVRVKVDGKEYTPQEISAMILQKLKKDAEAYLGE--KVTEAVITVPAYFNDAQRQATKD-AGKIAG 157 (595)
T ss_pred HhhcCCeeEEcCCCceEEEECCEEecHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHHHHHHH-HHHHcC
Confidence 0111 11 111222 223344444432 23332 22468999999999988888755 456779
Q ss_pred CceeeeccccccccccccccCCCCCC--CCCCcEEEEecCCCceEEEeccC--cee-cccccEEecccHHHHHHHHHHHH
Q 013888 122 FKSLFVADPPSLVHLYEASRRPYGLL--SETQCSLVVDCGFSFTHAAPVFQ--NFT-VNYAVKRIDLGGKALTNYLKELV 196 (434)
Q Consensus 122 ~~~v~~~~~~~ls~~~~~~~~~~g~~--~~~~tglVVDiG~~~t~v~pV~d--G~~-~~~~~~~~~~GG~~l~~~l~~ll 196 (434)
+.-+.++++|.+|++. +|.. ....+-+|+|+|+++++|+-+.- |.. +..+.....+||.++++.|.+.+
T Consensus 158 l~v~~li~EptAAAl~------y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~ 231 (595)
T TIGR02350 158 LEVLRIINEPTAAALA------YGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWL 231 (595)
T ss_pred CceEEEecchHHHHHH------HhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHH
Confidence 9999999999999983 3321 12456799999999998877642 321 12222335799999999988776
Q ss_pred hh
Q 013888 197 SY 198 (434)
Q Consensus 197 ~~ 198 (434)
..
T Consensus 232 ~~ 233 (595)
T TIGR02350 232 AD 233 (595)
T ss_pred HH
Confidence 53
No 32
>PRK13410 molecular chaperone DnaK; Provisional
Probab=99.32 E-value=1.1e-10 Score=123.15 Aligned_cols=188 Identities=18% Similarity=0.179 Sum_probs=115.7
Q ss_pred CCCeEEEEcCCcceEEeecCCCCCC--------eeeecCceeeCCCCceecCccccccccccccc--cee----------
Q 013888 1 MSNIVVLDNGGGLIKAGHGGERDPA--------VTIPNCMYRPLSSKKFIHPSPTAASATEDLTS--AAV---------- 60 (434)
Q Consensus 1 ~~~~vViD~Gs~~~k~G~ag~~~P~--------~~~ps~~~~~~~~~~~~~g~~~~~~~~~d~~~--~~~---------- 60 (434)
|+.+|-||+|+.++.+++..+..|. ..+||+++.... ...++|..|......++.+ +.+
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~-~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~ 79 (668)
T PRK13410 1 MGRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKD-GELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE 79 (668)
T ss_pred CCcEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCC-CCEEECHHHHHhhHhCccceehHHhhhhCCCchh
Confidence 7789999999999999988655554 245777776433 2356777654210000000 000
Q ss_pred ------eccc-----CCC----------cccCh-HHHHHHHHHHhh---ccCCCCCCCCcEEEeccCCCCHHHHHHHHHH
Q 013888 61 ------RRPI-----DRG----------YLINS-DLQRDIWAHLFS---SLLHISPSASSLLLTEPLFALPSIQRATDEL 115 (434)
Q Consensus 61 ------~~p~-----~~g----------~i~~~-d~~e~il~~~~~---~~L~~~~~~~~vll~e~~~~~~~~re~l~e~ 115 (434)
.+|+ .+| ..... +....+|+++.. .+++.+ =..++++.|.+++...|+.+.+.
T Consensus 80 ~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~--v~~~VITVPa~f~~~qR~a~~~A 157 (668)
T PRK13410 80 LDPESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGEP--VTGAVITVPAYFNDSQRQATRDA 157 (668)
T ss_pred hHHhhccCCeEEEECCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCC--cceEEEEECCCCCHHHHHHHHHH
Confidence 1111 111 11122 222344444432 234422 24699999999999988876544
Q ss_pred HhhhcCCceeeeccccccccccccccCCCCCCC-CCCcEEEEecCCCceEEEecc--Ccee-cccccEEecccHHHHHHH
Q 013888 116 VFEDFNFKSLFVADPPSLVHLYEASRRPYGLLS-ETQCSLVVDCGFSFTHAAPVF--QNFT-VNYAVKRIDLGGKALTNY 191 (434)
Q Consensus 116 lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~-~~~tglVVDiG~~~t~v~pV~--dG~~-~~~~~~~~~~GG~~l~~~ 191 (434)
.+.-|+.-+.++++|.+|++ ++|... ...+-+|+|+|+++++|+-+. +|.. +..+.....+||.++++.
T Consensus 158 -a~~AGl~v~~li~EPtAAAl------ayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~ 230 (668)
T PRK13410 158 -GRIAGLEVERILNEPTAAAL------AYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKR 230 (668)
T ss_pred -HHHcCCCeEEEecchHHHHH------HhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHH
Confidence 47789999999999999999 444221 245679999999999887665 3322 222223357999999998
Q ss_pred HHHHHhh
Q 013888 192 LKELVSY 198 (434)
Q Consensus 192 l~~ll~~ 198 (434)
|.+.+..
T Consensus 231 l~~~l~~ 237 (668)
T PRK13410 231 IVDWLAE 237 (668)
T ss_pred HHHHHHH
Confidence 8876643
No 33
>PLN03184 chloroplast Hsp70; Provisional
Probab=99.31 E-value=1e-10 Score=123.69 Aligned_cols=188 Identities=15% Similarity=0.161 Sum_probs=116.6
Q ss_pred CCCeEEEEcCCcceEEeecCCCCCC--------eeeecCceeeCCCCceecCcccccccccccc----------------
Q 013888 1 MSNIVVLDNGGGLIKAGHGGERDPA--------VTIPNCMYRPLSSKKFIHPSPTAASATEDLT---------------- 56 (434)
Q Consensus 1 ~~~~vViD~Gs~~~k~G~ag~~~P~--------~~~ps~~~~~~~~~~~~~g~~~~~~~~~d~~---------------- 56 (434)
|+.+|-||+|+.++.+++..+..|. ..+||+++...+. ..++|+.+......++.
T Consensus 38 ~~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~-~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d 116 (673)
T PLN03184 38 AEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNG-DRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE 116 (673)
T ss_pred CCCEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCC-CEEECHHHHHhhhhCchhhhHHHHHhhCCCcch
Confidence 4568899999999999998666654 2346677654322 34567655411000000
Q ss_pred --------cce----------eecccCCCcccChHHHHHHHHHHhh---ccCCCCCCCCcEEEeccCCCCHHHHHHHHHH
Q 013888 57 --------SAA----------VRRPIDRGYLINSDLQRDIWAHLFS---SLLHISPSASSLLLTEPLFALPSIQRATDEL 115 (434)
Q Consensus 57 --------~~~----------~~~p~~~g~i~~~d~~e~il~~~~~---~~L~~~~~~~~vll~e~~~~~~~~re~l~e~ 115 (434)
.+. +..+.....+.-.+....+|.++.. .+++. .-..++++.|.++....|+.+.+
T Consensus 117 ~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR~a~~~- 193 (673)
T PLN03184 117 VDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLND--KVTKAVITVPAYFNDSQRTATKD- 193 (673)
T ss_pred hhhhhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHHHHHHH-
Confidence 001 1111111222233445566666553 23432 23579999999999888887754
Q ss_pred HhhhcCCceeeeccccccccccccccCCCCCCC-CCCcEEEEecCCCceEEEeccCc--ee-cccccEEecccHHHHHHH
Q 013888 116 VFEDFNFKSLFVADPPSLVHLYEASRRPYGLLS-ETQCSLVVDCGFSFTHAAPVFQN--FT-VNYAVKRIDLGGKALTNY 191 (434)
Q Consensus 116 lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~-~~~tglVVDiG~~~t~v~pV~dG--~~-~~~~~~~~~~GG~~l~~~ 191 (434)
..+.-|+.-+.++++|.+|++ ++|... ....-+|+|+|+++++|+-+.-+ .. +..+....++||.++++.
T Consensus 194 Aa~~AGl~v~~li~EPtAAAl------ayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~ 267 (673)
T PLN03184 194 AGRIAGLEVLRIINEPTAASL------AYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKR 267 (673)
T ss_pred HHHHCCCCeEEEeCcHHHHHH------HhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHH
Confidence 557789999999999999998 444221 13467999999999998776433 21 112222468999999999
Q ss_pred HHHHHhh
Q 013888 192 LKELVSY 198 (434)
Q Consensus 192 l~~ll~~ 198 (434)
|.+.+..
T Consensus 268 L~~~~~~ 274 (673)
T PLN03184 268 IVDWLAS 274 (673)
T ss_pred HHHHHHH
Confidence 9877654
No 34
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=99.31 E-value=6e-11 Score=123.55 Aligned_cols=186 Identities=15% Similarity=0.142 Sum_probs=111.9
Q ss_pred CeEEEEcCCcceEEeecCCCCCC--------eeeecCceeeCCCCceecCcccc--------cccccc----cccc----
Q 013888 3 NIVVLDNGGGLIKAGHGGERDPA--------VTIPNCMYRPLSSKKFIHPSPTA--------ASATED----LTSA---- 58 (434)
Q Consensus 3 ~~vViD~Gs~~~k~G~ag~~~P~--------~~~ps~~~~~~~~~~~~~g~~~~--------~~~~~d----~~~~---- 58 (434)
.+|-||+|+.+..+++..+..|. ..+||+++...+ ..++|+.+. .....+ ....
T Consensus 20 ~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~--~~~vG~~Ati~~~KrliG~~~~~~~~~~~~~~~~k 97 (595)
T PRK01433 20 IAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSN--NFTIGNNKGLRSIKRLFGKTLKEILNTPALFSLVK 97 (595)
T ss_pred eEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCC--CEEECchhhHHHHHHHhCCCchhhccchhhHhhhh
Confidence 47889999999999988554443 345677765432 255676541 000100 0000
Q ss_pred -eee-----cccC-CCcccC-hHHHHHHHHHHhh---ccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeee
Q 013888 59 -AVR-----RPID-RGYLIN-SDLQRDIWAHLFS---SLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFV 127 (434)
Q Consensus 59 -~~~-----~p~~-~g~i~~-~d~~e~il~~~~~---~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~ 127 (434)
.+. .++. .|.... .+....+|.++-. .+++. .-..++++.|.+++...|+.+.+ ..+.-|+.-+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~--~v~~aVITVPa~f~~~qR~a~~~-Aa~~AGl~v~~l 174 (595)
T PRK01433 98 DYLDVNSSELKLNFANKQLRIPEIAAEIFIYLKNQAEEQLKT--NITKAVITVPAHFNDAARGEVML-AAKIAGFEVLRL 174 (595)
T ss_pred heeecCCCeeEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHHHHHH-HHHHcCCCEEEE
Confidence 000 0010 112222 2333445544432 23432 23578999999999888887754 467789999999
Q ss_pred ccccccccccccccCCCCCCC-CCCcEEEEecCCCceEEEecc--Ccee-cccccEEecccHHHHHHHHHHHHhhc
Q 013888 128 ADPPSLVHLYEASRRPYGLLS-ETQCSLVVDCGFSFTHAAPVF--QNFT-VNYAVKRIDLGGKALTNYLKELVSYR 199 (434)
Q Consensus 128 ~~~~~ls~~~~~~~~~~g~~~-~~~tglVVDiG~~~t~v~pV~--dG~~-~~~~~~~~~~GG~~l~~~l~~ll~~~ 199 (434)
+++|.+|++ ++|... ...+-+|+|+|+++++|+-+. +|.. +..+.....+||++++..|.+.+..+
T Consensus 175 i~EPtAAAl------ay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~~~ 244 (595)
T PRK01433 175 IAEPTAAAY------AYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNK 244 (595)
T ss_pred ecCcHHHHH------HHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHHHHHh
Confidence 999999999 444221 134568999999999887764 4422 11222235799999999998877654
No 35
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=99.30 E-value=1.9e-10 Score=120.93 Aligned_cols=186 Identities=16% Similarity=0.114 Sum_probs=113.3
Q ss_pred CCeEEEEcCCcceEEeecCCCCCCe--------eeecCceeeCCCCceecCcccccccccccc--ccee-----------
Q 013888 2 SNIVVLDNGGGLIKAGHGGERDPAV--------TIPNCMYRPLSSKKFIHPSPTAASATEDLT--SAAV----------- 60 (434)
Q Consensus 2 ~~~vViD~Gs~~~k~G~ag~~~P~~--------~~ps~~~~~~~~~~~~~g~~~~~~~~~d~~--~~~~----------- 60 (434)
..+|-||+|+.++.+++..+..|.. .+||+++... +..++|+.+......++. -+.+
T Consensus 27 ~~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~--~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~ 104 (657)
T PTZ00186 27 GDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKG--SEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDE 104 (657)
T ss_pred ceEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECC--CCEEEcHHHHHhhhhCchhHHHHHHHHhccccccH
Confidence 3578899999999998876555442 3566666442 234667655311000000 0000
Q ss_pred -------ecccC--------------CCcccChHHH-HHHHHHHh---hccCCCCCCCCcEEEeccCCCCHHHHHHHHHH
Q 013888 61 -------RRPID--------------RGYLINSDLQ-RDIWAHLF---SSLLHISPSASSLLLTEPLFALPSIQRATDEL 115 (434)
Q Consensus 61 -------~~p~~--------------~g~i~~~d~~-e~il~~~~---~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~ 115 (434)
.+|+. .|.....+.+ ..+|.++. .++++. .-..++++.|.+.....|+.+. -
T Consensus 105 ~v~~~~~~~p~~vv~~~~~~~~i~~~~~~~~speeisa~iL~~Lk~~Ae~~lg~--~v~~aVITVPayF~~~qR~at~-~ 181 (657)
T PTZ00186 105 HIQKDIKNVPYKIVRAGNGDAWVQDGNGKQYSPSQIGAFVLEKMKETAENFLGH--KVSNAVVTCPAYFNDAQRQATK-D 181 (657)
T ss_pred HHHHhhccCcEEEEEcCCCceEEEeCCCeEEcHHHHHHHHHHHHHHHHHHHhCC--ccceEEEEECCCCChHHHHHHH-H
Confidence 01111 1222233322 23344443 234442 2257899999999988887764 4
Q ss_pred HhhhcCCceeeeccccccccccccccCCCCCCC-CCCcEEEEecCCCceEEEecc--Ccee-cccccEEecccHHHHHHH
Q 013888 116 VFEDFNFKSLFVADPPSLVHLYEASRRPYGLLS-ETQCSLVVDCGFSFTHAAPVF--QNFT-VNYAVKRIDLGGKALTNY 191 (434)
Q Consensus 116 lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~-~~~tglVVDiG~~~t~v~pV~--dG~~-~~~~~~~~~~GG~~l~~~ 191 (434)
..+..|+.-+.++++|.+|++ ++|... ....-+|+|+|.++++|+-+. +|.. +..+.....+||.++++.
T Consensus 182 Aa~~AGl~v~rlInEPtAAAl------ayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~ 255 (657)
T PTZ00186 182 AGTIAGLNVIRVVNEPTAAAL------AYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLA 255 (657)
T ss_pred HHHHcCCCeEEEEcChHHHHH------HHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHH
Confidence 557789999999999999999 444221 135679999999999988765 5543 222233468999999998
Q ss_pred HHHHHhh
Q 013888 192 LKELVSY 198 (434)
Q Consensus 192 l~~ll~~ 198 (434)
|.+.+..
T Consensus 256 l~~~~~~ 262 (657)
T PTZ00186 256 LSDYILE 262 (657)
T ss_pred HHHHHHH
Confidence 8876643
No 36
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=99.24 E-value=1.8e-10 Score=120.98 Aligned_cols=185 Identities=17% Similarity=0.133 Sum_probs=114.1
Q ss_pred eEEEEcCCcceEEeecCCCCCC--------eeeecCceeeCCCCceecCccccccccc------------------cccc
Q 013888 4 IVVLDNGGGLIKAGHGGERDPA--------VTIPNCMYRPLSSKKFIHPSPTAASATE------------------DLTS 57 (434)
Q Consensus 4 ~vViD~Gs~~~k~G~ag~~~P~--------~~~ps~~~~~~~~~~~~~g~~~~~~~~~------------------d~~~ 57 (434)
+|-||+|+.++.+++..+..|. ..+||+++...+ ..++|..|...... |...
T Consensus 21 ~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~--~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 98 (616)
T PRK05183 21 AVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLED--GIEVGYEARANAAQDPKNTISSVKRFMGRSLADIQQ 98 (616)
T ss_pred EEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCC--CEEEcHHHHHhhHhCchhhHHHHHHHhCCCchhhhh
Confidence 5889999999999987555543 235777765433 25677766421000 0000
Q ss_pred ceeeccc--------------CCCcccChHHHHHHHHHHhh---ccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhc
Q 013888 58 AAVRRPI--------------DRGYLINSDLQRDIWAHLFS---SLLHISPSASSLLLTEPLFALPSIQRATDELVFEDF 120 (434)
Q Consensus 58 ~~~~~p~--------------~~g~i~~~d~~e~il~~~~~---~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~ 120 (434)
..-.+|+ ..|.+.-.+....+|.++.. +.++. .-..++++.|.++....|+.+ .-..+..
T Consensus 99 ~~~~~~~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR~a~-~~Aa~~A 175 (616)
T PRK05183 99 RYPHLPYQFVASENGMPLIRTAQGLKSPVEVSAEILKALRQRAEETLGG--ELDGAVITVPAYFDDAQRQAT-KDAARLA 175 (616)
T ss_pred hhhcCCeEEEecCCCceEEEecCCeEcHHHHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHHHH-HHHHHHc
Confidence 0000111 11222222334455555543 23432 235789999999998888877 4556788
Q ss_pred CCceeeeccccccccccccccCCCCCCC-CCCcEEEEecCCCceEEEecc--Ccee-cccccEEecccHHHHHHHHHHHH
Q 013888 121 NFKSLFVADPPSLVHLYEASRRPYGLLS-ETQCSLVVDCGFSFTHAAPVF--QNFT-VNYAVKRIDLGGKALTNYLKELV 196 (434)
Q Consensus 121 ~~~~v~~~~~~~ls~~~~~~~~~~g~~~-~~~tglVVDiG~~~t~v~pV~--dG~~-~~~~~~~~~~GG~~l~~~l~~ll 196 (434)
|+.-+.++++|.+|++ ++|... ....-+|+|+|+++++|+.+. .|.. +..+.....+||.++++.|.+.+
T Consensus 176 Gl~v~~li~EPtAAAl------ay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~ 249 (616)
T PRK05183 176 GLNVLRLLNEPTAAAI------AYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWI 249 (616)
T ss_pred CCCeEEEecchHHHHH------HhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHHH
Confidence 9999999999999998 433211 134568999999999987764 3322 12222335799999999998877
Q ss_pred hhc
Q 013888 197 SYR 199 (434)
Q Consensus 197 ~~~ 199 (434)
..+
T Consensus 250 ~~~ 252 (616)
T PRK05183 250 LEQ 252 (616)
T ss_pred HHH
Confidence 654
No 37
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=99.24 E-value=2e-10 Score=121.41 Aligned_cols=101 Identities=17% Similarity=0.147 Sum_probs=72.5
Q ss_pred CcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCCCCCCcEEEEecCCCceEEEecc--Cc
Q 013888 94 SSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVF--QN 171 (434)
Q Consensus 94 ~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~~tglVVDiG~~~t~v~pV~--dG 171 (434)
..++++.|.++....|+.+. -..+..|+.-+.++++|.+|++.+..... .....+-+|+|+|+++++|+-+. +|
T Consensus 141 ~~~VItVPa~f~~~qR~a~~-~Aa~~AGl~v~~li~EptAAAl~y~~~~~---~~~~~~vlv~D~GggT~dvsv~~~~~~ 216 (653)
T PTZ00009 141 KDAVVTVPAYFNDSQRQATK-DAGTIAGLNVLRIINEPTAAAIAYGLDKK---GDGEKNVLIFDLGGGTFDVSLLTIEDG 216 (653)
T ss_pred ceeEEEeCCCCCHHHHHHHH-HHHHHcCCceeEEecchHHHHHHHhhhcc---CCCCCEEEEEECCCCeEEEEEEEEeCC
Confidence 57999999999988887764 45678899999999999999994321000 01145689999999999887654 44
Q ss_pred ee-cccccEEecccHHHHHHHHHHHHhh
Q 013888 172 FT-VNYAVKRIDLGGKALTNYLKELVSY 198 (434)
Q Consensus 172 ~~-~~~~~~~~~~GG~~l~~~l~~ll~~ 198 (434)
.. +..+.....+||++++..|.+.+..
T Consensus 217 ~~~v~a~~gd~~lGG~d~D~~l~~~~~~ 244 (653)
T PTZ00009 217 IFEVKATAGDTHLGGEDFDNRLVEFCVQ 244 (653)
T ss_pred eEEEEEecCCCCCChHHHHHHHHHHHHH
Confidence 32 1222223589999999988876643
No 38
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=99.05 E-value=1.6e-09 Score=114.44 Aligned_cols=100 Identities=19% Similarity=0.168 Sum_probs=68.5
Q ss_pred CcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCCCCCCcEEEEecCCCceEEEecc--Cc
Q 013888 94 SSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVF--QN 171 (434)
Q Consensus 94 ~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~~tglVVDiG~~~t~v~pV~--dG 171 (434)
..++++.|..++...|+.+. -..+..|++.+.++++|.+|++.+..... ....+-+|+|+|+++++|+-+. +|
T Consensus 136 ~~~vitVPa~~~~~qr~~~~-~Aa~~agl~~~~li~Ep~Aaa~~y~~~~~----~~~~~vlv~D~Gggt~dvs~~~~~~~ 210 (602)
T PF00012_consen 136 TDVVITVPAYFTDEQRQALR-DAAELAGLNVLRLINEPTAAALAYGLERS----DKGKTVLVVDFGGGTFDVSVVEFSNG 210 (602)
T ss_dssp EEEEEEE-TT--HHHHHHHH-HHHHHTT-EEEEEEEHHHHHHHHTTTTSS----SSEEEEEEEEEESSEEEEEEEEEETT
T ss_pred ccceeeechhhhhhhhhccc-ccccccccccceeeccccccccccccccc----ccccceeccccccceEeeeehhcccc
Confidence 46899999999999888774 45567899989999999998873221000 0135679999999999887764 44
Q ss_pred eec-ccccEEecccHHHHHHHHHHHHhh
Q 013888 172 FTV-NYAVKRIDLGGKALTNYLKELVSY 198 (434)
Q Consensus 172 ~~~-~~~~~~~~~GG~~l~~~l~~ll~~ 198 (434)
..- ........+||.++++.|.+.+..
T Consensus 211 ~~~v~~~~~~~~lGG~~~D~~l~~~~~~ 238 (602)
T PF00012_consen 211 QFEVLATAGDNNLGGRDFDEALAEYLLE 238 (602)
T ss_dssp EEEEEEEEEETTCSHHHHHHHHHHHHHH
T ss_pred cccccccccccccccceecceeeccccc
Confidence 321 222334689999999999987754
No 39
>PRK11678 putative chaperone; Provisional
Probab=99.03 E-value=2.8e-08 Score=100.22 Aligned_cols=180 Identities=16% Similarity=0.160 Sum_probs=106.2
Q ss_pred eEEEEcCCcceEEeecCCCCCC--------eeeecCceeeC---------------------------------------
Q 013888 4 IVVLDNGGGLIKAGHGGERDPA--------VTIPNCMYRPL--------------------------------------- 36 (434)
Q Consensus 4 ~vViD~Gs~~~k~G~ag~~~P~--------~~~ps~~~~~~--------------------------------------- 36 (434)
.|-||+||.++-+++..+..|. ..+||+++...
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 4679999999999998655443 34567665421
Q ss_pred CCCceecCcccccccccccccce----ee-----cccCCCcccChH-HHHHHHHHHhh---ccCCCCCCCCcEEEeccCC
Q 013888 37 SSKKFIHPSPTAASATEDLTSAA----VR-----RPIDRGYLINSD-LQRDIWAHLFS---SLLHISPSASSLLLTEPLF 103 (434)
Q Consensus 37 ~~~~~~~g~~~~~~~~~d~~~~~----~~-----~p~~~g~i~~~d-~~e~il~~~~~---~~L~~~~~~~~vll~e~~~ 103 (434)
.....++|..+......++.+.. ++ .++..+.+..++ ....+|.++-. ..++.+ -..++++.|..
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~~~~~~~e~l~a~iL~~lk~~ae~~~g~~--v~~~VItvPa~ 159 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKPQQVALFEDLVCAMMLHIKQQAEAQLQAA--ITQAVIGRPVN 159 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCccceeCHHHHHHHHHHHHHHHHHHHhCCC--CCcEEEEECCc
Confidence 12345577766421111111111 11 223333332333 23444554432 233322 25688888887
Q ss_pred CC-----HHHHHH--HHHHHhhhcCCceeeeccccccccccccccCCCCCCC-CCCcEEEEecCCCceEEEeccCc----
Q 013888 104 AL-----PSIQRA--TDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLS-ETQCSLVVDCGFSFTHAAPVFQN---- 171 (434)
Q Consensus 104 ~~-----~~~re~--l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~-~~~tglVVDiG~~~t~v~pV~dG---- 171 (434)
.. ...|+. .+.-..+.-|++.+.++++|.+|++ ++|... ...+-+|+|+|.++++++-|--+
T Consensus 160 F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl------~y~~~~~~~~~vlV~D~GGGT~D~Svv~~~~~~~ 233 (450)
T PRK11678 160 FQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGL------DFEATLTEEKRVLVVDIGGGTTDCSMLLMGPSWR 233 (450)
T ss_pred cccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHH------HhccccCCCCeEEEEEeCCCeEEEEEEEecCccc
Confidence 65 444433 2455567889999999999999999 443211 24567999999999988776421
Q ss_pred -------eecccccEEecccHHHHHHHHH
Q 013888 172 -------FTVNYAVKRIDLGGKALTNYLK 193 (434)
Q Consensus 172 -------~~~~~~~~~~~~GG~~l~~~l~ 193 (434)
.++..+- ..+||+++++.|.
T Consensus 234 ~~~~r~~~vla~~G--~~lGG~DfD~~L~ 260 (450)
T PRK11678 234 GRADRSASLLGHSG--QRIGGNDLDIALA 260 (450)
T ss_pred ccCCcceeEEecCC--CCCChHHHHHHHH
Confidence 1222221 3699999999885
No 40
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=98.96 E-value=8e-10 Score=111.05 Aligned_cols=207 Identities=15% Similarity=0.086 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCCCC-CCcEEEEecCCCceEEEeccCceecccccEEeccc
Q 013888 106 PSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSE-TQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLG 184 (434)
Q Consensus 106 ~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~-~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~G 184 (434)
....+.+.+ +++.-|+.-..++.+|+++++ +...... ....+|||+|++.|+++-+.+|.+.. ...+++|
T Consensus 165 ~~~~~~~~~-a~~~aGl~v~~iv~ep~Aaa~------a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~~--~~~i~~G 235 (420)
T PRK09472 165 NDMAKNIVK-AVERCGLKVDQLIFAGLASSY------AVLTEDERELGVCVVDIGGGTMDIAVYTGGALRH--TKVIPYA 235 (420)
T ss_pred hHHHHHHHH-HHHHcCCeEeeEEehhhHHHH------HhcChhhhhcCeEEEEeCCCceEEEEEECCEEEE--Eeeeech
Confidence 344455555 568889999999999999998 4432211 23468999999999999999998775 4568999
Q ss_pred HHHHHHHHHHHHhhcCCCCCChHHHHHHHHhhcccccccHHHHHHHHHhcCCCCceeEeeeCCCCcccccccccChhhHh
Q 013888 185 GKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQ 264 (434)
Q Consensus 185 G~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~c~v~~~~~~~~~~~~~~~~~~~~~~~~~lpd~~~~~~~~i~~~~~~~ 264 (434)
|+++++.+...|. .....++.+|.++.....+... ....+.+|.-....
T Consensus 236 G~~it~dIa~~l~-------i~~~~AE~lK~~~g~~~~~~~~-------------~~~~i~v~~~~~~~----------- 284 (420)
T PRK09472 236 GNVVTSDIAYAFG-------TPPSDAEAIKVRHGCALGSIVG-------------KDESVEVPSVGGRP----------- 284 (420)
T ss_pred HHHHHHHHHHHhC-------cCHHHHHHHHHhcceeccccCC-------------CCceeEecCCCCCC-----------
Confidence 9999999886653 2356688888775433221000 00112222100000
Q ss_pred hhhccCCCCCCCCCccccccchhHHHHHHHhhhhccCCccEEEccCccccCCccccCCCCCCCCCCCHHHHHHHHHHhcC
Q 013888 265 RYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCH 344 (434)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~er~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~ 344 (434)
...+... ...+++.. ....|.++|.+++..++
T Consensus 285 ----------------------------------------~~~i~~~--~l~~ii~~------r~~ei~~~i~~~l~~~~ 316 (420)
T PRK09472 285 ----------------------------------------PRSLQRQ--TLAEVIEP------RYTELLNLVNEEILQLQ 316 (420)
T ss_pred ----------------------------------------CeEEcHH--HHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 0000000 00000000 01135566777777666
Q ss_pred hhhHH-----HhHcCeEEecCCCCCcChHHHHHHhhcccCCCCceEEEec----------CCCCCccccchhhhhcC
Q 013888 345 PYLHS-----VLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITT----------QEDPLLGVWRGGSLLAS 406 (434)
Q Consensus 345 ~d~r~-----~l~~nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~----------~~~~~~~~w~Gasila~ 406 (434)
.+++. .+...|+||||+|++||+.+.+++.+.. ++++.. ..+|.|++-.|..+++.
T Consensus 317 ~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~------~vri~~P~~~~g~~~~~~~P~~ata~Gl~~~~~ 387 (420)
T PRK09472 317 EQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHT------QVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGK 387 (420)
T ss_pred HHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCC------CeEEeCCcccCCChhhcCCcHHHHHHHHHHHhh
Confidence 65543 3556699999999999999999988853 233322 13688999999988865
No 41
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=98.90 E-value=2.4e-09 Score=106.21 Aligned_cols=101 Identities=15% Similarity=0.038 Sum_probs=74.6
Q ss_pred CHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCC-CCCCcEEEEecCCCceEEEeccCceecccccEEecc
Q 013888 105 LPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLL-SETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDL 183 (434)
Q Consensus 105 ~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~-~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~ 183 (434)
++...+.+.+ +++..|+.-+.+..+|+++++ +.... ......+|||+|++.|+++.+.+|.+.. ...+++
T Consensus 156 ~~~~v~~~~~-~~~~aGl~~~~i~~~~~A~a~------a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~--~~~i~~ 226 (371)
T TIGR01174 156 SSTILRNLVK-CVERCGLEVDNIVLSGLASAI------AVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRY--TKVIPI 226 (371)
T ss_pred EHHHHHHHHH-HHHHcCCCeeeEEEhhhhhhh------hhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEE--Eeeecc
Confidence 4444455544 457789998899999999988 33211 1133568999999999999999998765 456899
Q ss_pred cHHHHHHHHHHHHhhcCCCCCChHHHHHHHHhhccccc
Q 013888 184 GGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVS 221 (434)
Q Consensus 184 GG~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~c~v~ 221 (434)
||+++++.+.+.+. .....++.+|.+++...
T Consensus 227 GG~~it~~i~~~l~-------~~~~~AE~lK~~~~~~~ 257 (371)
T TIGR01174 227 GGNHITKDIAKALR-------TPLEEAERIKIKYGCAS 257 (371)
T ss_pred hHHHHHHHHHHHhC-------CCHHHHHHHHHHeeEec
Confidence 99999998876552 23566899998887653
No 42
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=8.8e-08 Score=99.53 Aligned_cols=187 Identities=18% Similarity=0.182 Sum_probs=119.4
Q ss_pred CCeEEEEcCCcceEEeecCCC-CCC--------eeeecCceeeCCCCceecCcccccccccccc--cceeecccCCC---
Q 013888 2 SNIVVLDNGGGLIKAGHGGER-DPA--------VTIPNCMYRPLSSKKFIHPSPTAASATEDLT--SAAVRRPIDRG--- 67 (434)
Q Consensus 2 ~~~vViD~Gs~~~k~G~ag~~-~P~--------~~~ps~~~~~~~~~~~~~g~~~~~~~~~d~~--~~~~~~p~~~g--- 67 (434)
+.+|-||+|+.++-+.+.... .|. ..+||+++..... ..++|..+......++. .+.+++.+-++
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~-~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~~ 83 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNG-EVLVGQAAKRQAVDNPENTIFSIKRKIGRGSNG 83 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCC-CEEecHHHHHHhhhCCcceEEEEehhcCCCCCC
Confidence 378999999999999888655 443 2345666544333 46678766521112221 23344444322
Q ss_pred ---------cccChH-HHHHHHHHHhh---ccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccc
Q 013888 68 ---------YLINSD-LQRDIWAHLFS---SLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLV 134 (434)
Q Consensus 68 ---------~i~~~d-~~e~il~~~~~---~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls 134 (434)
.....+ ....++.++-. ..|+ ..-+.++++.|.+.....|..+ .-.....|++-+.++++|.+|
T Consensus 84 ~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg--~~v~~~VItVPayF~d~qR~at-~~A~~iaGl~vlrlinEPtAA 160 (579)
T COG0443 84 LKISVEVDGKKYTPEEISAMILTKLKEDAEAYLG--EKVTDAVITVPAYFNDAQRQAT-KDAARIAGLNVLRLINEPTAA 160 (579)
T ss_pred CcceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhC--CCcceEEEEeCCCCCHHHHHHH-HHHHHHcCCCeEEEecchHHH
Confidence 112222 22233333221 1222 3347899999999988887666 556678899999999999999
Q ss_pred cccccccCCCCCCC-CCCcEEEEecCCCceEEEeccCc---eecccccEEecccHHHHHHHHHHHHhh
Q 013888 135 HLYEASRRPYGLLS-ETQCSLVVDCGFSFTHAAPVFQN---FTVNYAVKRIDLGGKALTNYLKELVSY 198 (434)
Q Consensus 135 ~~~~~~~~~~g~~~-~~~tglVVDiG~~~t~v~pV~dG---~~~~~~~~~~~~GG~~l~~~l~~ll~~ 198 (434)
+| ++|... ...+-+|+|+|+++++|+-|-=+ +.+..+.....+||++++..|...+..
T Consensus 161 Al------ayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~ 222 (579)
T COG0443 161 AL------AYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVM 222 (579)
T ss_pred HH------HhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHH
Confidence 99 666433 24577999999999998877653 222334556789999999988766543
No 43
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=98.82 E-value=1.1e-07 Score=92.29 Aligned_cols=184 Identities=14% Similarity=0.104 Sum_probs=111.1
Q ss_pred EEcCCcceEEeecC-CCCC-CeeeecCceeeCC--------------------CCceecCcccccccccccccceeeccc
Q 013888 7 LDNGGGLIKAGHGG-ERDP-AVTIPNCMYRPLS--------------------SKKFIHPSPTAASATEDLTSAAVRRPI 64 (434)
Q Consensus 7 iD~Gs~~~k~G~ag-~~~P-~~~~ps~~~~~~~--------------------~~~~~~g~~~~~~~~~d~~~~~~~~p~ 64 (434)
||+|-.++|+=+.+ +..+ ..+|||.++.... ...|++|+.+. ...+. ...+-+
T Consensus 2 iDvGyg~~K~~~~~~~~~~~~~~fPS~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~y~VG~~a~--~~~~~---~~~~~~ 76 (320)
T TIGR03739 2 VDVGYGNTKFVSQVRGTDIRCASFPSVAPPSSRESPAWPGGSEARKTVCVPVGGLFYEVGPDVS--LAADT---NRARQL 76 (320)
T ss_pred ccccCCceEEEecCCCCceeeEEcccccccccccccccccccCCCceEEEEECCEEEEeccchh--hcccC---ccceec
Confidence 79999999976643 2222 3567887653211 12355666553 11110 001112
Q ss_pred CCCcccChHHHHHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhh--------cCCceeeeccccccccc
Q 013888 65 DRGYLINSDLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFED--------FNFKSLFVADPPSLVHL 136 (434)
Q Consensus 65 ~~g~i~~~d~~e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~--------~~~~~v~~~~~~~ls~~ 136 (434)
.+.... -+....++.+++.. .+.+ .-..|++--|...-...|+.+.+.+-.. ..+..+.+.|+++.+++
T Consensus 77 ~~~~~~-~~~~~~L~~~Al~~-~~~~-~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~ 153 (320)
T TIGR03739 77 HDEYTE-TPEYMALLRGALAL-SKVR-EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALV 153 (320)
T ss_pred cccccC-CHHHHHHHHHHHHH-hcCC-CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHH
Confidence 222221 23455666677653 2322 1223555555554455677776665432 57788999999998877
Q ss_pred cccccCCCCCCCCCCcEEEEecCCCceEEEeccCceecccccEEecccHHHHHHHHHHHHhhc
Q 013888 137 YEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYR 199 (434)
Q Consensus 137 ~~~~~~~~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~ 199 (434)
....... +......+.+|||+|+.+|+++.+.++.+........+.|...+.+.+.+.|.++
T Consensus 154 ~~~~~~~-~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~ 215 (320)
T TIGR03739 154 HFVAQHG-KLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLLAAEISKD 215 (320)
T ss_pred HHHhcCC-CcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHHHHHHHhh
Confidence 4321000 0001245679999999999999888888888777778999999999999988755
No 44
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=98.74 E-value=3.9e-07 Score=89.12 Aligned_cols=80 Identities=19% Similarity=0.064 Sum_probs=59.4
Q ss_pred cCCceeeeccccccccccccccCCCCC----CCCCCcEEEEecCCCceEEEeccCceecccccEEecccHHHHHHHHHHH
Q 013888 120 FNFKSLFVADPPSLVHLYEASRRPYGL----LSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKEL 195 (434)
Q Consensus 120 ~~~~~v~~~~~~~ls~~~~~~~~~~g~----~~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~l 195 (434)
..+..+.+.++++.+++..... ..|. .......+|||||+.+|.++-+.++.+.......++.|+..+.+.+.+.
T Consensus 151 I~i~~V~V~pQ~~ga~~~~~~~-~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~ 229 (344)
T PRK13917 151 INVKGVKVVAQPMGTLLDLYLD-NDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASH 229 (344)
T ss_pred EEEEEEEEecccHHHHHHHHhc-ccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHH
Confidence 4567788999999888732210 0010 0012356999999999999999999998887777999999999999998
Q ss_pred HhhcC
Q 013888 196 VSYRA 200 (434)
Q Consensus 196 l~~~~ 200 (434)
+..+.
T Consensus 230 i~~~~ 234 (344)
T PRK13917 230 ISKKE 234 (344)
T ss_pred HHhhC
Confidence 86443
No 45
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=98.63 E-value=1.8e-07 Score=92.32 Aligned_cols=213 Identities=17% Similarity=0.105 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCCCCCCcEEEEecCCCceEEEeccCceecccccEEecccH
Q 013888 106 PSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGG 185 (434)
Q Consensus 106 ~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG 185 (434)
....+.+ .-++|+-+..-..++-+|++|....... ....-.+++||+|++.|+|+-+.+|.+.... .+|+||
T Consensus 164 ~~~~~Nl-~k~v~r~gl~v~~i~l~plAsa~a~L~~-----dEkelGv~lIDiG~GTTdIai~~~G~l~~~~--~ipvgG 235 (418)
T COG0849 164 KNILENL-EKCVERAGLKVDNIVLEPLASALAVLTE-----DEKELGVALIDIGGGTTDIAIYKNGALRYTG--VIPVGG 235 (418)
T ss_pred hHHHHHH-HHHHHHhCCCeeeEEEehhhhhhhccCc-----ccHhcCeEEEEeCCCcEEEEEEECCEEEEEe--eEeeCc
Confidence 3444444 4455777777777777888888722210 1224567899999999999999999988854 489999
Q ss_pred HHHHHHHHHHHhhcCCCCCChHHHHHHHHhhcccccccHHHHHHHHHhcCCCCceeEeeeCCCCcccccccccChhhHhh
Q 013888 186 KALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQR 265 (434)
Q Consensus 186 ~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~c~v~~~~~~~~~~~~~~~~~~~~~~~~~lpd~~~~~~~~i~~~~~~~~ 265 (434)
+++|..+.+.|. .+...+|.||.++.....+... ....+..|.--... ..+ .
T Consensus 236 ~~vT~DIa~~l~-------t~~~~AE~iK~~~g~a~~~~~~-------------~~~~i~v~~vg~~~---~~~---~-- 287 (418)
T COG0849 236 DHVTKDIAKGLK-------TPFEEAERIKIKYGSALISLAD-------------DEETIEVPSVGSDI---PRQ---V-- 287 (418)
T ss_pred cHHHHHHHHHhC-------CCHHHHHHHHHHcCccccCcCC-------------CcceEecccCCCcc---cch---h--
Confidence 999999998874 3567799999987554332110 01112222100000 000 0
Q ss_pred hhccCCCCCCCCCccccccchhHHHHHHHhhhhccCCccEEEccCccccCCccccCCCCCCCCCCCHHHHHHHHHHhcCh
Q 013888 266 YLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHP 345 (434)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~er~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~ 345 (434)
..+.+.. .| +-+++| +-++|.+.|.+.-.
T Consensus 288 -----------------------t~~~ls~---------II-----~aR~~E--------------i~~lV~~~l~~~g~ 316 (418)
T COG0849 288 -----------------------TRSELSE---------II-----EARVEE--------------ILELVKAELRKSGL 316 (418)
T ss_pred -----------------------hHHHHHH---------HH-----HhhHHH--------------HHHHHHHHHHHcCc
Confidence 0000000 00 111232 45556666655443
Q ss_pred hhHHHhHcCeEEecCCCCCcChHHHHHHhhcccCCCCceEEEec----CCCCCccccchhhhhcCc
Q 013888 346 YLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITT----QEDPLLGVWRGGSLLASS 407 (434)
Q Consensus 346 d~r~~l~~nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~----~~~~~~~~w~Gasila~l 407 (434)
. ..+.+.|+||||+++++|+.+-.++-+.....-..+..+.- ..+|.|++-+|.-.++..
T Consensus 317 ~--~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P~~~~Gl~d~~~~p~fs~avGl~~~~~~ 380 (418)
T COG0849 317 P--NHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARNPAFSTAVGLLLYGAL 380 (418)
T ss_pred c--ccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCCccccCchhhccCchhhhhHHHHHHHhh
Confidence 3 56778999999999999999887776654322111112222 236899999999888764
No 46
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=98.26 E-value=1.2e-05 Score=79.16 Aligned_cols=100 Identities=9% Similarity=-0.028 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHhhhcCCceeeecccccccccccc----ccCCCCCCCCCC-cEEEEecCCCceEEEeccCceecccccE
Q 013888 105 LPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEA----SRRPYGLLSETQ-CSLVVDCGFSFTHAAPVFQNFTVNYAVK 179 (434)
Q Consensus 105 ~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~----~~~~~g~~~~~~-tglVVDiG~~~t~v~pV~dG~~~~~~~~ 179 (434)
++...+.+.++ |+..|+.-..+-.++++..-... ...... ... +.++||+|++.|+++-+.+|.++. ..
T Consensus 141 ~~~~v~~~~~~-~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~---~~~~~~~lvdiG~~~t~l~i~~~g~~~~--~r 214 (348)
T TIGR01175 141 RKEVVDSRLHA-LKLAGLEPKVVDVESFALLRAWRLLGEQLASRT---YRLTDAALVDIGATSSTLNLLHPGRMLF--TR 214 (348)
T ss_pred cHHHHHHHHHH-HHHcCCceEEEecHHHHHHHHHHHHHhhCcccc---ccCceEEEEEECCCcEEEEEEECCeEEE--EE
Confidence 56666666555 56777776555555544332110 000000 123 488999999999999999999887 56
Q ss_pred EecccHHHHHHHHHHHHhhcCCCCCChHHHHHHHHhhc
Q 013888 180 RIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKL 217 (434)
Q Consensus 180 ~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~ 217 (434)
.+++||+++++.+.+.+. .+...++++|.+.
T Consensus 215 ~i~~G~~~i~~~i~~~~~-------~~~~~Ae~~k~~~ 245 (348)
T TIGR01175 215 EVPFGTRQLTSELSRAYG-------LNPEEAGEAKQQG 245 (348)
T ss_pred EeechHHHHHHHHHHHcC-------CCHHHHHHHHhcC
Confidence 789999999998876542 2334566666543
No 47
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=97.99 E-value=5.5e-05 Score=74.12 Aligned_cols=119 Identities=15% Similarity=0.095 Sum_probs=65.2
Q ss_pred ChHHHHHHHHHHhhccCCCCCCC-----------------CcEEEeccCCCCHHHHHHHHHHHhhhcCCceeee--cccc
Q 013888 71 NSDLQRDIWAHLFSSLLHISPSA-----------------SSLLLTEPLFALPSIQRATDELVFEDFNFKSLFV--ADPP 131 (434)
Q Consensus 71 ~~d~~e~il~~~~~~~L~~~~~~-----------------~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~--~~~~ 131 (434)
+.+.++..+++=..+++..+.++ ..|+++-. ++..-+..++ +|+..|..-..+ -.-+
T Consensus 86 ~~~el~~~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~Aa---~k~~v~~~~~-~~~~aGL~~~~vDv~~~A 161 (340)
T PF11104_consen 86 PEKELEEAIRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLVAA---PKEIVESYVE-LFEEAGLKPVAVDVEAFA 161 (340)
T ss_dssp -HHHHHHHHHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEEEE---EHHHHHHHHH-HHHHTT-EEEEEEEHHHH
T ss_pred CHHHHHHHHHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEEEE---cHHHHHHHHH-HHHHcCCceEEEeehHHH
Confidence 45667777777766666543332 34555432 4444444433 456667665433 2233
Q ss_pred ccccccccccCCCCCCCCCCcEEEEecCCCceEEEeccCceecccccEEecccHHHHHHHHHHHH
Q 013888 132 SLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELV 196 (434)
Q Consensus 132 ~ls~~~~~~~~~~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll 196 (434)
++-+|..... .........+-++||+|++.|+++-+.+|.++. .+.+++||+++++.+.+.+
T Consensus 162 l~r~~~~~~~-~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~f--~R~i~~G~~~l~~~i~~~~ 223 (340)
T PF11104_consen 162 LARLFEFLEP-QLPDEEDAETVALVDIGASSTTVIIFQNGKPIF--SRSIPIGGNDLTEAIAREL 223 (340)
T ss_dssp GGGGGHHHHH-TST----T-EEEEEEE-SS-EEEEEEETTEEEE--EEEES-SHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-hCCcccccceEEEEEecCCeEEEEEEECCEEEE--EEEEeeCHHHHHHHHHHhc
Confidence 3344422100 000000123558999999999999999999887 5678999999999888665
No 48
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00041 Score=71.41 Aligned_cols=99 Identities=21% Similarity=0.245 Sum_probs=70.3
Q ss_pred CcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCC------CCCCcEEEEecCCCceEEEe
Q 013888 94 SSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLL------SETQCSLVVDCGFSFTHAAP 167 (434)
Q Consensus 94 ~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~------~~~~tglVVDiG~~~t~v~p 167 (434)
..+++|.|++.....|+.+++-. .-.|..-++++++..+++. .+|+. .....-++-|+|+++|+++-
T Consensus 159 kd~ViTVP~~F~qaeR~all~Aa-~iagl~vLqLind~~a~Al------~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ati 231 (902)
T KOG0104|consen 159 KDMVITVPPFFNQAERRALLQAA-QIAGLNVLQLINDGTAVAL------NYGVFRRKEINETPQHYIFYDMGSGSTSATI 231 (902)
T ss_pred hheEEeCCcccCHHHHHHHHHHH-HhcCchhhhhhccchHHHh------hhhhhccccCCCCceEEEEEecCCCceeEEE
Confidence 57899999999999998886644 4457788899999998888 33311 12345578899999999988
Q ss_pred ccCceeccc-------cc------EEecccHHHHHHHHHHHHhhc
Q 013888 168 VFQNFTVNY-------AV------KRIDLGGKALTNYLKELVSYR 199 (434)
Q Consensus 168 V~dG~~~~~-------~~------~~~~~GG~~l~~~l~~ll~~~ 199 (434)
|.--.+-.. .+ ....+||..++..|+..|...
T Consensus 232 vsy~~v~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~~ 276 (902)
T KOG0104|consen 232 VSYQLVKTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLANE 276 (902)
T ss_pred EEEEeeccccccCccceEEEEeeccCCccchHHHHHHHHHHHHHH
Confidence 753222111 11 123689999999999888653
No 49
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=97.65 E-value=0.00067 Score=65.77 Aligned_cols=186 Identities=15% Similarity=0.093 Sum_probs=90.4
Q ss_pred eEEEEcCCcceEEeecCCCC-CCeeeecCceeeCCCCceecCcccccccccccccceeecccCCCccc----Ch--HHH-
Q 013888 4 IVVLDNGGGLIKAGHGGERD-PAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVRRPIDRGYLI----NS--DLQ- 75 (434)
Q Consensus 4 ~vViD~Gs~~~k~G~ag~~~-P~~~~ps~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~p~~~g~i~----~~--d~~- 75 (434)
.|.||-|+..+|+.|..+.. =+.+.|+......... +.|+.....-..|...+.+ .|...+.+. +| ..+
T Consensus 2 ~i~iDdG~~~~K~~~~~~~~~~~~~~~~s~~~~~~~~--~~~~~~~~~y~v~g~~yt~-~~~~~~~~~t~~~~y~~s~~n 78 (318)
T PF06406_consen 2 KIAIDDGSTNVKLAWYEDGKIKTSISPNSFRSGWKVS--FMGDSKSFNYEVDGEKYTV-DEVSSDALDTTHVDYQYSDLN 78 (318)
T ss_dssp EEEEEE-SSEEEEEEE-SS-EEEEEEE--EESS------S-SSS---EEESSSSEEEE-STTBTTTTSS-HGGGGGSHHH
T ss_pred eEEEecCCCceeEEEecCCeEEEEecccccccccccc--ccCCCceeEEEECCEEEEE-cCCCCccccccccccccchhh
Confidence 47899999999999985442 1234455433222111 0111110000011111111 222222221 22 112
Q ss_pred HHHHHHHhhccCCCCCCCCcEEEeccCC---CC--HHHHHHHH----HHHh-------hhcCCceeeecccccccccccc
Q 013888 76 RDIWAHLFSSLLHISPSASSLLLTEPLF---AL--PSIQRATD----ELVF-------EDFNFKSLFVADPPSLVHLYEA 139 (434)
Q Consensus 76 e~il~~~~~~~L~~~~~~~~vll~e~~~---~~--~~~re~l~----e~lf-------E~~~~~~v~~~~~~~ls~~~~~ 139 (434)
.-...|++.+ -++.|.+-.++++-|.- .. ...++.+. .++. +.+.+..+.+.|+++.|.|...
T Consensus 79 ~~av~haL~~-~G~~~~~V~lvvGLPl~~y~~~~~~~~~~~i~rk~~n~~~~v~~~g~~~i~I~~V~V~PQ~~~A~~~~~ 157 (318)
T PF06406_consen 79 LVAVHHALLK-AGLEPQDVDLVVGLPLSEYYDQDKQKNEENIERKKENLMRPVELNGGYTITIKDVEVFPQSVGAVFDAL 157 (318)
T ss_dssp HHHHHHHHHH-HS--SSEEEEEEEE-HHHHB-TTSSB-HHHHHHHHHHTTS-EEETTB---EEEEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCCCeEEEecCCHHHHHhhhhhhHHHHHHhhhcccccceeecCceeEEEeeEEEEcccHHHHHHHH
Confidence 2345666653 46777777777777621 11 11112221 1221 1355778999999999988543
Q ss_pred ccCCCCCCCCCCcEEEEecCCCceEEEeccCceeccccc-EEecccHHHHHHHHHHHHhh
Q 013888 140 SRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAV-KRIDLGGKALTNYLKELVSY 198 (434)
Q Consensus 140 ~~~~~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~-~~~~~GG~~l~~~l~~ll~~ 198 (434)
.. . ....+.+|||||+.+|+++-|.++....+.. ...++|-..+.+.+.+.|..
T Consensus 158 ~~----~-~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~ 212 (318)
T PF06406_consen 158 MD----L-DEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRS 212 (318)
T ss_dssp HT----S--TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT-
T ss_pred Hh----h-cccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHH
Confidence 21 0 0135679999999999999887765544433 34578999999999998875
No 50
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=97.36 E-value=0.00024 Score=61.89 Aligned_cols=62 Identities=26% Similarity=0.187 Sum_probs=52.0
Q ss_pred HhhhcCCceeeeccccccccccccccCCCCCCCCCCcEEEEecCCCceEEEeccCceecccccEEecccHHHHH
Q 013888 116 VFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALT 189 (434)
Q Consensus 116 lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~ 189 (434)
+.|.-|...++.+.+|.++++ --+ ..+|.|||+|.+.|-|.-+-+|.++..+ .-+.||.+++
T Consensus 115 ViESAGlevl~vlDEPTAaa~------vL~----l~dg~VVDiGGGTTGIsi~kkGkViy~A--DEpTGGtHmt 176 (277)
T COG4820 115 VIESAGLEVLHVLDEPTAAAD------VLQ----LDDGGVVDIGGGTTGISIVKKGKVIYSA--DEPTGGTHMT 176 (277)
T ss_pred eecccCceeeeecCCchhHHH------Hhc----cCCCcEEEeCCCcceeEEEEcCcEEEec--cCCCCceeEE
Confidence 347788899999999999998 545 8899999999999999999999999854 3577886655
No 51
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.30 E-value=0.0015 Score=61.46 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=37.2
Q ss_pred EEEEecCCCceEEEeccCceecccccEEecccHHHHHHHHHHHH
Q 013888 153 SLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELV 196 (434)
Q Consensus 153 glVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll 196 (434)
.+|+|||+..|.++-+++|+++. .+..++||+.+++-+.+..
T Consensus 195 vav~~Igat~s~l~vi~~gk~ly--~r~~~~g~~Qlt~~i~r~~ 236 (354)
T COG4972 195 VAVFDIGATSSELLVIQDGKILY--TREVPVGTDQLTQEIQRAY 236 (354)
T ss_pred heeeeecccceEEEEEECCeeee--EeeccCcHHHHHHHHHHHh
Confidence 35999999999999999999998 4678999999999887765
No 52
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=97.26 E-value=0.014 Score=54.52 Aligned_cols=43 Identities=30% Similarity=0.472 Sum_probs=35.4
Q ss_pred CeEEecCCCCCcChHHHHHHhhcccCCCCceEEEecCCCCCccccchhhhh
Q 013888 354 SIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLL 404 (434)
Q Consensus 354 nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasil 404 (434)
.|+++||.+..+++.++|.+.|. ..+..++++.+..-+||+++
T Consensus 206 ~Vvl~GGva~n~~l~~~l~~~lg--------~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 206 PIVFTGGVSKNKGLVKALEKKLG--------MKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred CEEEECccccCHHHHHHHHHHhC--------CcEEcCCCccHHHHHHHHhC
Confidence 79999999999999999999883 24555667777888898764
No 53
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=96.96 E-value=0.0032 Score=62.69 Aligned_cols=163 Identities=13% Similarity=0.085 Sum_probs=88.7
Q ss_pred eEEEEcCCcceEEeecC----CCCCCeeeecCceeeCCCCceecCcccccccccccccceeecccCCCcccChHHHHHHH
Q 013888 4 IVVLDNGGGLIKAGHGG----ERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDIW 79 (434)
Q Consensus 4 ~vViD~Gs~~~k~G~ag----~~~P~~~~ps~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~p~~~g~i~~~d~~e~il 79 (434)
.|-||+||.++..=||- +..+.+.+|-+.- +..+.. .. +--+..|+......|-+.++.+.
T Consensus 8 SVGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~I---------~dkev~--yr----S~i~fTPl~~~~~ID~~~i~~~V 72 (475)
T PRK10719 8 SVGIDIGTTTTQVIFSRLELENRASVFQVPRIEI---------IDKEII--YR----SPIYFTPLLKQGEIDEAAIKELI 72 (475)
T ss_pred EEEEeccCceEEEEEEEEEEecccccccCceEEE---------eeeEEE--Ee----cCceecCCCCCccccHHHHHHHH
Confidence 47899999999987773 1111111121110 111111 01 11235688776677999999999
Q ss_pred HHHhhccCCCCCCC---CcEEEeccCCCCHHHHHHHHHHH---hhhcCCceeeeccccccccccccccCCCC----CCCC
Q 013888 80 AHLFSSLLHISPSA---SSLLLTEPLFALPSIQRATDELV---FEDFNFKSLFVADPPSLVHLYEASRRPYG----LLSE 149 (434)
Q Consensus 80 ~~~~~~~L~~~~~~---~~vll~e~~~~~~~~re~l~e~l---fE~~~~~~v~~~~~~~ls~~~~~~~~~~g----~~~~ 149 (434)
+.-|. .-++.|++ .-.+++-... ..+.-++.++-+ -..|=|...-+..+++++.+ ++| ....
T Consensus 73 ~~ey~-~Agi~~~die~~ahIITg~~~-~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva~~------ASg~avLseEk 144 (475)
T PRK10719 73 EEEYQ-KAGIAPESIDSGAVIITGETA-RKENAREVVMALSGSAGDFVVATAGPDLESIIAGK------GAGAQTLSEER 144 (475)
T ss_pred HHHHH-HcCCCHHHccccEEEEEechh-HHHHHHHHHHHhcccccceeeeccCccHHHhhhHH------HhhHHHhhhhc
Confidence 99997 46788764 2344444322 222222222221 01111111111111122222 111 1122
Q ss_pred CCcEEEEecCCCceEEEeccCceecccccEEecccHHHHHHH
Q 013888 150 TQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNY 191 (434)
Q Consensus 150 ~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~ 191 (434)
....++||||++.|+++-+.+|.++.. ..+++||+.++..
T Consensus 145 e~gVa~IDIGgGTT~iaVf~~G~l~~T--~~l~vGG~~IT~D 184 (475)
T PRK10719 145 NTRVLNIDIGGGTANYALFDAGKVIDT--ACLNVGGRLIETD 184 (475)
T ss_pred cCceEEEEeCCCceEEEEEECCEEEEE--EEEecccceEEEC
Confidence 455689999999999999999998884 4589999987643
No 54
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0099 Score=61.34 Aligned_cols=96 Identities=21% Similarity=0.213 Sum_probs=69.3
Q ss_pred CcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCC---CCCCcEEEEecCCCceEEEecc-
Q 013888 94 SSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLL---SETQCSLVVDCGFSFTHAAPVF- 169 (434)
Q Consensus 94 ~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~---~~~~tglVVDiG~~~t~v~pV~- 169 (434)
..++++.|.......|..+ +-.-.-.|++.+.++++|.+++. ++|+. ....+-+|.|.|.+...|.++.
T Consensus 144 ~~aviTVPa~F~~~Qr~at-~~A~~iaGl~vlrii~EPtAaal------Aygl~k~~~~~~~VlI~DlGggtfdvs~l~i 216 (620)
T KOG0101|consen 144 KKAVVTVPAYFNDSQRAAT-KDAALIAGLNVLRIINEPTAAAL------AYGLDKKVLGERNVLIFDLGGGTFDVSVLSL 216 (620)
T ss_pred eeEEEEecCCcCHHHHHHH-HHHHHhcCCceeeeecchHHHHH------HhhccccccceeeEEEEEcCCCceeeeeEEe
Confidence 5788999988888877665 44445568899999999999998 55422 1245669999999988777765
Q ss_pred -Cce-ecccccEEecccHHHHHHHHHHHH
Q 013888 170 -QNF-TVNYAVKRIDLGGKALTNYLKELV 196 (434)
Q Consensus 170 -dG~-~~~~~~~~~~~GG~~l~~~l~~ll 196 (434)
+|. .+.......++||.++++.|...+
T Consensus 217 ~gG~~~vkat~gd~~lGGedf~~~l~~h~ 245 (620)
T KOG0101|consen 217 EGGIFEVKATAGDTHLGGEDFDNKLVNHF 245 (620)
T ss_pred ccchhhhhhhcccccccchhhhHHHHHHH
Confidence 342 233445557999999888777554
No 55
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.016 Score=55.91 Aligned_cols=116 Identities=16% Similarity=0.200 Sum_probs=71.4
Q ss_pred CcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCC--CCCCcEEEEecCCCceEE--Eecc
Q 013888 94 SSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLL--SETQCSLVVDCGFSFTHA--APVF 169 (434)
Q Consensus 94 ~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~--~~~~tglVVDiG~~~t~v--~pV~ 169 (434)
..-+++.|.+.....|+..-.. =---|..-+-+++.|.+|+. ++|+. .+..+-||.|.|.+.-.| .-|-
T Consensus 173 ~~AVvTvPAYFNDAQrQATKDA-GtIAgLnV~RIiNePTaAAI------AYGLDKk~gEknilVfDLGGGTFDVSlLtId 245 (663)
T KOG0100|consen 173 THAVVTVPAYFNDAQRQATKDA-GTIAGLNVVRIINEPTAAAI------AYGLDKKDGEKNILVFDLGGGTFDVSLLTID 245 (663)
T ss_pred cceEEecchhcchHHHhhhccc-ceeccceEEEeecCccHHHH------HhcccccCCcceEEEEEcCCceEEEEEEEEc
Confidence 3456777888777777765221 11134556778899999888 66644 346788999999987655 4555
Q ss_pred Ccee-cccccEEecccHHHHHHHHHHHH----hh-cCCCCCChHHHHHHHHhh
Q 013888 170 QNFT-VNYAVKRIDLGGKALTNYLKELV----SY-RAINVMDETFIIDDVKEK 216 (434)
Q Consensus 170 dG~~-~~~~~~~~~~GG~~l~~~l~~ll----~~-~~~~~~~~~~~~~~iKe~ 216 (434)
+|+- +..+--...+||.+.++...+.+ .+ .+.++..+...+..++++
T Consensus 246 nGVFeVlaTnGDThLGGEDFD~rvm~~fiklykkK~gkDv~kdnkA~~KLrRe 298 (663)
T KOG0100|consen 246 NGVFEVLATNGDTHLGGEDFDQRVMEYFIKLYKKKHGKDVRKDNKAVQKLRRE 298 (663)
T ss_pred CceEEEEecCCCcccCccchHHHHHHHHHHHHhhhcCCccchhhHHHHHHHHH
Confidence 6643 22233346899998887554433 22 234444444555555543
No 56
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=96.81 E-value=0.0085 Score=58.89 Aligned_cols=48 Identities=29% Similarity=0.382 Sum_probs=40.8
Q ss_pred hHcCeEEecCCCCCcChHHHHHHhhcccCCCCceEEEecCCCCCccccchhhhhcC
Q 013888 351 LYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLAS 406 (434)
Q Consensus 351 l~~nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasila~ 406 (434)
+-+.|+++||.+..+|+.+.|.+.|. .++..+++|++..-+||+++|+
T Consensus 355 i~~~VvftGGva~N~gvv~ale~~Lg--------~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 355 VREPVILVGGTSLIEGLVKALGDLLG--------IEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CCCcEEEECChhhhHHHHHHHHHHhC--------CcEEECCcccHHHHHHHHHHhc
Confidence 44569999999999999999999884 3456688899999999999984
No 57
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.051 Score=56.13 Aligned_cols=101 Identities=17% Similarity=0.175 Sum_probs=70.8
Q ss_pred CCCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCC--------CCCCCcEEEEecCCCce
Q 013888 92 SASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGL--------LSETQCSLVVDCGFSFT 163 (434)
Q Consensus 92 ~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~--------~~~~~tglVVDiG~~~t 163 (434)
.-..++|..|.+.+...|..++... ...|+.-+-++.+..+++. ++|. .....+-+.||+||+.+
T Consensus 136 ~v~DcvIavP~~FTd~qRravldAA-~iagLn~lrLmnd~TA~Al------~ygiyKtDLP~~~ekpr~v~fvD~GHS~~ 208 (727)
T KOG0103|consen 136 PVSDCVIAVPSYFTDSQRRAVLDAA-RIAGLNPLRLMNDTTATAL------AYGIYKTDLPENEEKPRNVVFVDIGHSSY 208 (727)
T ss_pred CCCCeeEeccccccHHHHHHHHhHH-hhcCccceeeeecchHhHh------hcccccccCCCcccCcceEEEEecccccc
Confidence 3467899999999999998887655 3567888888888777777 4441 11234567899999999
Q ss_pred EEEeccCceecc---cccEEecccHHHHHHHHHHHHhhc
Q 013888 164 HAAPVFQNFTVN---YAVKRIDLGGKALTNYLKELVSYR 199 (434)
Q Consensus 164 ~v~pV~dG~~~~---~~~~~~~~GG~~l~~~l~~ll~~~ 199 (434)
+++-.---.... .+...-.+||++.+..|.+.+...
T Consensus 209 q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L~~hfa~e 247 (727)
T KOG0103|consen 209 QVSIAAFTKGKLKVLATAFDRKLGGRDFDEALIDHFAKE 247 (727)
T ss_pred eeeeeeeccCcceeeeeecccccccchHHHHHHHHHHHH
Confidence 886654322222 223334899999999988877543
No 58
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=95.73 E-value=0.42 Score=46.34 Aligned_cols=44 Identities=30% Similarity=0.295 Sum_probs=39.7
Q ss_pred eEEecCCCCCcChHHHHHHhhcccCCCCceEEEecCCCCCccccchhhhhcC
Q 013888 355 IILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLAS 406 (434)
Q Consensus 355 IiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasila~ 406 (434)
||++||++...++..-|.+.|. .+|+.|+.+++.--+||+++++
T Consensus 346 iv~~GGva~n~av~~ale~~lg--------~~V~vP~~~ql~GAiGAAL~a~ 389 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLLG--------RKVIVPPYAQLMGAIGAALIAK 389 (396)
T ss_pred EEEECcchhhHHHHHHHHHHhC--------CeeecCCccchhhHHHHHHHHh
Confidence 9999999999999999999885 4778888999999999999885
No 59
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=94.97 E-value=0.28 Score=49.27 Aligned_cols=175 Identities=13% Similarity=0.116 Sum_probs=102.6
Q ss_pred eEEEEcCCcceEEeecC---C-CCCCeeeecCceeeCCCCceecCcccccccccccccceeecccCCCcccChHHHHHHH
Q 013888 4 IVVLDNGGGLIKAGHGG---E-RDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDIW 79 (434)
Q Consensus 4 ~vViD~Gs~~~k~G~ag---~-~~P~~~~ps~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~p~~~g~i~~~d~~e~il 79 (434)
.|-||+||.++..=||. + ..+.+.+|-+.- +..+.. ... --+..|+......|-+.++.+.
T Consensus 5 SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I---------~dkeVi--YrS----~I~fTPl~~~~~ID~~al~~iv 69 (473)
T PF06277_consen 5 SVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEI---------VDKEVI--YRS----PIYFTPLLSQTEIDAEALKEIV 69 (473)
T ss_pred EEEEeecCCceeEEEEEeEEEeccCCCccceEEE---------eccEEE--ecC----CccccCCCCCCccCHHHHHHHH
Confidence 47899999999987774 1 112222221111 111111 011 1235688777777999999999
Q ss_pred HHHhhccCCCCCCC---CcEEEeccCCCCHHHHHHHHHHHhhhcC---CceeeeccccccccccccccCCCCC----CCC
Q 013888 80 AHLFSSLLHISPSA---SSLLLTEPLFALPSIQRATDELVFEDFN---FKSLFVADPPSLVHLYEASRRPYGL----LSE 149 (434)
Q Consensus 80 ~~~~~~~L~~~~~~---~~vll~e~~~~~~~~re~l~e~lfE~~~---~~~v~~~~~~~ls~~~~~~~~~~g~----~~~ 149 (434)
+.-|.+ -++.|++ -.|++|--..-.+.- +.+.+.|=+..| |...----++++|.. ++|- ...
T Consensus 70 ~~eY~~-Agi~p~~I~TGAVIITGETArKeNA-~~v~~~Ls~~aGDFVVATAGPdLEsiiAgk------GsGA~~~S~~~ 141 (473)
T PF06277_consen 70 EEEYRK-AGITPEDIDTGAVIITGETARKENA-REVLHALSGFAGDFVVATAGPDLESIIAGK------GSGAAALSKEH 141 (473)
T ss_pred HHHHHH-cCCCHHHCccccEEEecchhhhhhH-HHHHHHHHHhcCCEEEEccCCCHHHHHhcc------CccHHHHhhhh
Confidence 999974 7888865 578888765533333 334455544333 111111114455555 4441 112
Q ss_pred CCcEEEEecCCCceEEEeccCceecccccEEecccHHHH-----------HHHHHHHHhhcCCCC
Q 013888 150 TQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKAL-----------TNYLKELVSYRAINV 203 (434)
Q Consensus 150 ~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l-----------~~~l~~ll~~~~~~~ 203 (434)
..+-+=||||.++|.++-+.+|.++..+. +++||+.+ ..-++.++...+.++
T Consensus 142 ~~~V~NiDIGGGTtN~avf~~G~v~~T~c--l~IGGRLi~~d~~g~i~yis~~~~~l~~~~~~~~ 204 (473)
T PF06277_consen 142 HTVVANIDIGGGTTNIAVFDNGEVIDTAC--LDIGGRLIEFDPDGRITYISPPIQRLLEELGLEL 204 (473)
T ss_pred CCeEEEEEeCCCceeEEEEECCEEEEEEE--EeeccEEEEEcCCCcEEEECHHHHHHHHHhCCCC
Confidence 23344579999999999999999998654 78999743 344556666555543
No 60
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=94.21 E-value=0.31 Score=50.24 Aligned_cols=90 Identities=13% Similarity=-0.012 Sum_probs=54.8
Q ss_pred CCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeecc---ccccccccccccCCCCCCCCCCcEEEEecCCCceEEEecc
Q 013888 93 ASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVAD---PPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVF 169 (434)
Q Consensus 93 ~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~---~~~ls~~~~~~~~~~g~~~~~~tglVVDiG~~~t~v~pV~ 169 (434)
+..++-|.. .-....++.+++-+.+..|++ +-++. ++.++.++- ..++. ...+++|||||.++|.++-+.
T Consensus 78 ~i~~vATsA-vReA~N~~~fl~~i~~~tGl~-ievIsG~eEA~l~~~gv----~~~l~-~~~~~lviDIGGGStEl~~~~ 150 (496)
T PRK11031 78 QIRVVATAT-LRLAVNADEFLAKAQEILGCP-VQVISGEEEARLIYQGV----AHTTG-GADQRLVVDIGGASTELVTGT 150 (496)
T ss_pred eEEEEEeHH-HHcCcCHHHHHHHHHHHHCCC-eEEeCHHHHHHHHHHhh----hhccC-CCCCEEEEEecCCeeeEEEec
Confidence 344444433 223345666777778877876 33333 333333311 11111 123589999999999999998
Q ss_pred CceecccccEEecccHHHHHHH
Q 013888 170 QNFTVNYAVKRIDLGGKALTNY 191 (434)
Q Consensus 170 dG~~~~~~~~~~~~GG~~l~~~ 191 (434)
+|.+.. ...+|+|.-.+++.
T Consensus 151 ~~~~~~--~~Sl~lG~vrl~e~ 170 (496)
T PRK11031 151 GAQATS--LFSLSMGCVTWLER 170 (496)
T ss_pred CCceee--eeEEeccchHHHHH
Confidence 888665 45789999776654
No 61
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=93.91 E-value=0.26 Score=47.29 Aligned_cols=94 Identities=15% Similarity=-0.082 Sum_probs=56.2
Q ss_pred CCCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCCCCCCcEEEEecCCCceEEEeccCc
Q 013888 92 SASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQN 171 (434)
Q Consensus 92 ~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~~tglVVDiG~~~t~v~pV~dG 171 (434)
.+..++-|...- ....++.+++.+.+..|+. +-++...-=+.|.+..- ..+ ....+++|||+|.++|.++-+.+|
T Consensus 71 ~~i~~vaTsa~R-~A~N~~~~~~~i~~~tgi~-i~visg~eEa~l~~~gv-~~~--~~~~~~~v~DiGGGSte~~~~~~~ 145 (300)
T TIGR03706 71 DEVRAVATAALR-DAKNGPEFLREAEAILGLP-IEVISGEEEARLIYLGV-AHT--LPIADGLVVDIGGGSTELILGKDF 145 (300)
T ss_pred CeEEEEEcHHHH-cCCCHHHHHHHHHHHHCCC-eEEeChHHHHHHHHHHH-HhC--CCCCCcEEEEecCCeEEEEEecCC
Confidence 344444444332 3345677778887777765 33444322222211100 001 113457999999999999999888
Q ss_pred eecccccEEecccHHHHHHHH
Q 013888 172 FTVNYAVKRIDLGGKALTNYL 192 (434)
Q Consensus 172 ~~~~~~~~~~~~GG~~l~~~l 192 (434)
.+.. ...+|+|.-.+++.+
T Consensus 146 ~~~~--~~Sl~lG~vrl~e~f 164 (300)
T TIGR03706 146 EPGE--GVSLPLGCVRLTEQF 164 (300)
T ss_pred CEeE--EEEEccceEEhHHhh
Confidence 7654 457899988777654
No 62
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=92.85 E-value=1.5 Score=44.61 Aligned_cols=115 Identities=19% Similarity=0.237 Sum_probs=75.5
Q ss_pred CcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCCCCC-CcEEEEecCCCceE--EEeccC
Q 013888 94 SSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSET-QCSLVVDCGFSFTH--AAPVFQ 170 (434)
Q Consensus 94 ~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~-~tglVVDiG~~~t~--v~pV~d 170 (434)
...+++.|.++....|+.+ .-...-.+...+-.+++|.+++. ++|+.-.. ..-.|-|+|.+... |.-|.+
T Consensus 161 ~~avvtvpAyfndsqRqaT-kdag~iagl~vlrvineptaaal------aygld~k~~g~iaV~dLgggtfdisilei~~ 233 (640)
T KOG0102|consen 161 KNAVITVPAYFNDSQRQAT-KDAGQIAGLNVLRVINEPTAAAL------AYGLDKKEDGVIAVFDLGGGTFDISILEIED 233 (640)
T ss_pred hheeeccHHHHhHHHHHHh-HhhhhhccceeeccCCccchhHH------hhcccccCCCceEEEEcCCceeeeeeehhcc
Confidence 4677888888888877765 33444556667778899999998 77754222 34468899977544 445666
Q ss_pred ceec-ccccEEecccHHHHHHHHHHHHhhc-----CCCCCChHHHHHHHHh
Q 013888 171 NFTV-NYAVKRIDLGGKALTNYLKELVSYR-----AINVMDETFIIDDVKE 215 (434)
Q Consensus 171 G~~~-~~~~~~~~~GG~~l~~~l~~ll~~~-----~~~~~~~~~~~~~iKe 215 (434)
|.-. ..+-.....||.+++..+..++-.. +.++..+...+..++|
T Consensus 234 gvfevksTngdtflggedfd~~~~~~~v~~fk~~~gidl~kd~~a~qrl~e 284 (640)
T KOG0102|consen 234 GVFEVKSTNGDTHLGGEDFDNALVRFIVSEFKKEEGIDLTKDRMALQRLRE 284 (640)
T ss_pred ceeEEEeccCccccChhHHHHHHHHHHHHhhhcccCcchhhhHHHHHHHHH
Confidence 7543 3344567899999999998877532 2333334445555554
No 63
>PRK10854 exopolyphosphatase; Provisional
Probab=91.60 E-value=0.91 Score=47.08 Aligned_cols=91 Identities=11% Similarity=-0.003 Sum_probs=54.3
Q ss_pred CCCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeecc---ccccccccccccCCCCCCCCCCcEEEEecCCCceEEEec
Q 013888 92 SASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVAD---PPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPV 168 (434)
Q Consensus 92 ~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~---~~~ls~~~~~~~~~~g~~~~~~tglVVDiG~~~t~v~pV 168 (434)
++..++-|.. .-....++.+++-+.+..|++ +-++. ++.++..+- ..++. ...+++|||||.++|.++-+
T Consensus 82 ~~v~~vATsA-lReA~N~~~fl~~i~~~tGl~-i~vIsG~EEA~l~~~gv----~~~l~-~~~~~lvvDIGGGStEl~~~ 154 (513)
T PRK10854 82 ANVCIVGTHT-LRQALNATDFLKRAEKVIPYP-IEIISGNEEARLIFMGV----EHTQP-EKGRKLVIDIGGGSTELVIG 154 (513)
T ss_pred CeEEEEehHH-HHcCcCHHHHHHHHHHHHCCC-eEEeCHHHHHHHHHhhh----hcccC-CCCCeEEEEeCCCeEEEEEe
Confidence 3344444433 223335666777777877876 33333 333333311 11111 12468999999999999999
Q ss_pred cCceecccccEEecccHHHHHHH
Q 013888 169 FQNFTVNYAVKRIDLGGKALTNY 191 (434)
Q Consensus 169 ~dG~~~~~~~~~~~~GG~~l~~~ 191 (434)
-+|.+.. ....++|.-.+++.
T Consensus 155 ~~~~~~~--~~S~~lG~vrl~e~ 175 (513)
T PRK10854 155 ENFEPIL--VESRRMGCVSFAQL 175 (513)
T ss_pred cCCCeeE--eEEEecceeeHHhh
Confidence 9987655 44568888777663
No 64
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=90.64 E-value=0.36 Score=45.06 Aligned_cols=50 Identities=20% Similarity=0.294 Sum_probs=40.1
Q ss_pred cCeEEecCCCCCcChHHHHHHhhcccCCCCceEEEecCCCCCccccchhhhhc
Q 013888 353 ESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLA 405 (434)
Q Consensus 353 ~nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasila 405 (434)
.+|+++||.+.-+|+.+.|+++|... ...+.+..+++|++..-+||++++
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~---~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEA---KMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccC---CcceEecCCCcchHHHHHHHHHcC
Confidence 46999999999999999999999532 123456567788999999999875
No 65
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=89.49 E-value=0.69 Score=47.33 Aligned_cols=76 Identities=17% Similarity=-0.029 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhhcCCceeeecc---ccccccccccccCCCCCCCC-CCcEEEEecCCCceEEEeccCceecccccEEecc
Q 013888 108 IQRATDELVFEDFNFKSLFVAD---PPSLVHLYEASRRPYGLLSE-TQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDL 183 (434)
Q Consensus 108 ~re~l~e~lfE~~~~~~v~~~~---~~~ls~~~~~~~~~~g~~~~-~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~ 183 (434)
..+...+.+-+.+|++- -++. ++-++.++- .++ .. ...++|+|+|.++|-++=+-+..+.. ...+|+
T Consensus 89 N~~eFl~rv~~~~G~~i-evIsGeeEArl~~lGv----~~~--~~~~~~~lv~DIGGGStEl~~g~~~~~~~--~~Sl~~ 159 (492)
T COG0248 89 NGDEFLARVEKELGLPI-EVISGEEEARLIYLGV----AST--LPRKGDGLVIDIGGGSTELVLGDNFEIGL--LISLPL 159 (492)
T ss_pred CHHHHHHHHHHHhCCce-EEeccHHHHHHHHHHH----Hhc--CCCCCCEEEEEecCCeEEEEEecCCccce--eEEeec
Confidence 34445566666677763 3332 344444411 111 22 67899999999999999887665554 456788
Q ss_pred cHHHHHHHH
Q 013888 184 GGKALTNYL 192 (434)
Q Consensus 184 GG~~l~~~l 192 (434)
|.-.+++.+
T Consensus 160 G~v~lt~~~ 168 (492)
T COG0248 160 GCVRLTERF 168 (492)
T ss_pred ceEEeehhh
Confidence 876655544
No 66
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=88.76 E-value=0.7 Score=45.46 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=42.7
Q ss_pred hHcCeEEecCCCCCcChHHHHHHhhcccCCCCceEEEecCCCCCccccchhhhhc
Q 013888 351 LYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLA 405 (434)
Q Consensus 351 l~~nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasila 405 (434)
+-..|+++||.+.-+||...|.+.|....+ ..+|+.+++|++..-+||+++|
T Consensus 381 i~~~VvftGGvA~N~gvv~aLe~~L~~~~~---~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 381 ITDQFTFTGGVAKNEAAVKELRKLIKENYG---EVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCCCEEEECCccccHHHHHHHHHHHccccC---CCeEecCCCccHHHHHHHHHhC
Confidence 456899999999999999999999965432 2356668889999999999875
No 67
>PRK13317 pantothenate kinase; Provisional
Probab=87.19 E-value=0.74 Score=43.57 Aligned_cols=71 Identities=18% Similarity=0.098 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHhcChh-hHHHhHcCeEEec-CCCCCcChHHHHHHhhcccCCCCceEEEecCCCCCccccchhhhhcC
Q 013888 331 GLAECIVRAVNSCHPY-LHSVLYESIILTG-GSTLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLAS 406 (434)
Q Consensus 331 ~l~~~I~~~i~~~~~d-~r~~l~~nIiltG-G~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasila~ 406 (434)
+|..+|.+.|..+..- .|..-.++|+++| |.+..|++.++|.+.+.. ...++..++++++..-+||++++.
T Consensus 201 sl~~~v~~~I~~lA~~~ar~~~~~~Ivf~G~gla~n~~l~~~l~~~l~~-----~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 201 GVIGLVGEVITTLSIQAAREKNIENIVYIGSTLTNNPLLQEIIESYTKL-----RNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEECcccccCHHHHHHHHHHHhc-----CCceEEecCCCchhHHHHHHHHhh
Confidence 5555665555544321 2333447999999 799999999999987742 124566678899999999998864
No 68
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=87.04 E-value=0.37 Score=45.65 Aligned_cols=49 Identities=27% Similarity=0.309 Sum_probs=39.5
Q ss_pred HhHcCeEEecCCCCCcChHHHHHHhhcccCCCCceEEEecCCCCCccccchhhhhc
Q 013888 350 VLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLA 405 (434)
Q Consensus 350 ~l~~nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasila 405 (434)
.+-..|+++||.+.-+|+.+.|+++|.. ++.+ .+++|++..-+||+++|
T Consensus 238 ~i~~~v~~~GGva~N~~l~~al~~~Lg~------~v~~-~p~~p~~~GAlGAAL~A 286 (293)
T TIGR03192 238 GVEEGFFITGGIAKNPGVVKRIERILGI------KAVD-TKIDSQIAGALGAALFG 286 (293)
T ss_pred CCCCCEEEECcccccHHHHHHHHHHhCC------Ccee-CCCCccHHHHHHHHHHH
Confidence 4556899999999999999999999942 2221 25578999999999998
No 69
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=86.03 E-value=5 Score=38.40 Aligned_cols=155 Identities=16% Similarity=0.152 Sum_probs=84.3
Q ss_pred eEEEEcCCcceEEeecC---------CCCCCeeeecCceeeCCCCceecCcccccccccccccceeecccCCCcccChHH
Q 013888 4 IVVLDNGGGLIKAGHGG---------ERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDL 74 (434)
Q Consensus 4 ~vViD~Gs~~~k~G~ag---------~~~P~~~~ps~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~p~~~g~i~~~d~ 74 (434)
.|-||+|+.++.+=|+. ...|+..|-. +++ . ..+--+..|+...--.|.++
T Consensus 7 SVGIDiGTsTTQvifS~lel~Nmas~~~VPri~ii~--------kdi------~------~rS~i~FTPv~~q~~id~~a 66 (473)
T COG4819 7 SVGIDIGTSTTQVIFSKLELVNMASVSQVPRIEIIK--------KDI------S------WRSPIFFTPVDKQGGIDEAA 66 (473)
T ss_pred eeeeeccCceeeeeeeeeEEeecccccccceEEEEe--------cce------e------eecceeeeeecccCCccHHH
Confidence 47899999999987774 2234333210 010 0 01122345665544447778
Q ss_pred HHHHHHHHhhccCCCCCCC---CcEEEeccCCCCHHHHHHHHHHH---hhhcCCceeeeccccccccccccccCCCC---
Q 013888 75 QRDIWAHLFSSLLHISPSA---SSLLLTEPLFALPSIQRATDELV---FEDFNFKSLFVADPPSLVHLYEASRRPYG--- 145 (434)
Q Consensus 75 ~e~il~~~~~~~L~~~~~~---~~vll~e~~~~~~~~re~l~e~l---fE~~~~~~v~~~~~~~ls~~~~~~~~~~g--- 145 (434)
++.+...=|. .-++.|++ ..|++|-...-.+..|..+ ..| .-.|=+.+.--.-+++.|-- ++|
T Consensus 67 lk~~v~eeY~-~AGi~pesi~sGAvIITGEtArk~NA~~vl-~alSg~aGDFVVAtAGPdLESiIAGk------GaGA~t 138 (473)
T COG4819 67 LKKLVLEEYQ-AAGIAPESIDSGAVIITGETARKRNARPVL-MALSGSAGDFVVATAGPDLESIIAGK------GAGAQT 138 (473)
T ss_pred HHHHHHHHHH-HcCCChhccccccEEEeccccccccchHHH-HHhhhcccceEEEecCCCHHHHhccC------Cccccc
Confidence 8888777776 36777764 5788887665544444433 122 11221111111111111111 222
Q ss_pred CCCCCCcE-EEEecCCCceEEEeccCceecccccEEecccHHHH
Q 013888 146 LLSETQCS-LVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKAL 188 (434)
Q Consensus 146 ~~~~~~tg-lVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l 188 (434)
+...+.|+ +=+|||.+.|...-+.-|.++..+ .+++||+.+
T Consensus 139 ~Seqr~t~v~NlDIGGGTtN~slFD~Gkv~dTa--CLdiGGRLi 180 (473)
T COG4819 139 LSEQRLTRVLNLDIGGGTTNYSLFDAGKVSDTA--CLDIGGRLI 180 (473)
T ss_pred hhhhhceEEEEEeccCCccceeeecccccccce--eeecCcEEE
Confidence 11123333 346999999999988889888755 478999754
No 70
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=84.31 E-value=4 Score=33.24 Aligned_cols=57 Identities=18% Similarity=0.188 Sum_probs=37.7
Q ss_pred EEEecCCCceEEEeccCceecccccEEeccc--------HHHHH--HHHHHHHhhcCCCCCChHHHHHHH-Hhhccc
Q 013888 154 LVVDCGFSFTHAAPVFQNFTVNYAVKRIDLG--------GKALT--NYLKELVSYRAINVMDETFIIDDV-KEKLCF 219 (434)
Q Consensus 154 lVVDiG~~~t~v~pV~dG~~~~~~~~~~~~G--------G~~l~--~~l~~ll~~~~~~~~~~~~~~~~i-Ke~~c~ 219 (434)
++||+|++.|.++-...|.... +..+++| |..++ +.+.+-|+. ....+|.+ |.+...
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~~--~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~-------a~~~AE~~~k~~i~~ 69 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDGY--IRVLGVGEVPSKGIKGGHITDIEDISKAIKI-------AIEEAERLAKCEIGS 69 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEEE--EEEES----------HHHHH--HHHHHHHT---------HHHHHHH-HHHH--
T ss_pred EEEEcCCCcEEEEEEEeCCCCc--EEEEEEecccccccCCCEEEEHHHHHHHHHH-------HHHHHHHHhCCeeeE
Confidence 6899999999998888877655 5668999 99999 778777643 23445655 555443
No 71
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=79.13 E-value=3 Score=39.58 Aligned_cols=77 Identities=18% Similarity=0.100 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhhcCCceeeecc---ccccccccccccCCCCCCCCCCcEEEEecCCCceEEEeccCceecccccEEeccc
Q 013888 108 IQRATDELVFEDFNFKSLFVAD---PPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLG 184 (434)
Q Consensus 108 ~re~l~e~lfE~~~~~~v~~~~---~~~ls~~~~~~~~~~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~G 184 (434)
.++.+++-+.+..|++- -++. ++.++...... + + ....+++|+|+|.++|.++.+.+|.+.. ...+|+|
T Consensus 72 N~~~~~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~--~--l-~~~~~~lviDIGGGStEl~~~~~~~~~~--~~Sl~lG 143 (285)
T PF02541_consen 72 NSDEFLDRIKKETGIDI-EIISGEEEARLSFLGVLS--S--L-PPDKNGLVIDIGGGSTELILFENGKVVF--SQSLPLG 143 (285)
T ss_dssp THHHHHHHHHHHHSS-E-EEE-HHHHHHHHHHHHHH--H--S-TTTSSEEEEEEESSEEEEEEEETTEEEE--EEEES--
T ss_pred CHHHHHHHHHHHhCCce-EEecHHHHHHHHHHHHHh--h--c-cccCCEEEEEECCCceEEEEEECCeeeE--eeeeehH
Confidence 45667788888888763 3333 33333331111 1 1 1367899999999999999999998777 4679999
Q ss_pred HHHHHHHH
Q 013888 185 GKALTNYL 192 (434)
Q Consensus 185 G~~l~~~l 192 (434)
.-.+++.+
T Consensus 144 ~vrl~e~~ 151 (285)
T PF02541_consen 144 AVRLTERF 151 (285)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98877665
No 72
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=79.01 E-value=1.3 Score=40.61 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=21.4
Q ss_pred CCcEEEEecCCCceEEEeccCce
Q 013888 150 TQCSLVVDCGFSFTHAAPVFQNF 172 (434)
Q Consensus 150 ~~tglVVDiG~~~t~v~pV~dG~ 172 (434)
..+++.||+|+..|+++||.+|.
T Consensus 129 ~dsci~VD~GSTTtDIIPi~~ge 151 (330)
T COG1548 129 KDSCILVDMGSTTTDIIPIKDGE 151 (330)
T ss_pred CCceEEEecCCcccceEeecchh
Confidence 56799999999999999999997
No 73
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=78.21 E-value=2 Score=41.03 Aligned_cols=26 Identities=23% Similarity=0.121 Sum_probs=20.5
Q ss_pred CCcEEEEecCCCceEEEeccCceecc
Q 013888 150 TQCSLVVDCGFSFTHAAPVFQNFTVN 175 (434)
Q Consensus 150 ~~tglVVDiG~~~t~v~pV~dG~~~~ 175 (434)
..++++||||..+|+|.+|.+|.+..
T Consensus 76 ~~~~i~vDmGGTTtDi~~i~~G~p~~ 101 (290)
T PF01968_consen 76 LENAIVVDMGGTTTDIALIKDGRPEI 101 (290)
T ss_dssp -SSEEEEEE-SS-EEEEEEETTEE--
T ss_pred CCCEEEEeCCCCEEEEEEEECCeeec
Confidence 78999999999999999999999964
No 74
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=76.81 E-value=0.52 Score=44.43 Aligned_cols=66 Identities=27% Similarity=0.359 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhcChhhHHHhHcCeEEecCCCCCcChHHHHHHhhcccCCCCceEEEecCCCCCccccchhhhhc
Q 013888 332 LAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLA 405 (434)
Q Consensus 332 l~~~I~~~i~~~~~d~r~~l~~nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasila 405 (434)
|.+.|...+.+..... ..|+++||...-..+.+.|++.|.+..+.. .+..+..|.+.+..||.++|
T Consensus 206 la~~i~~~~~~~~~~~-----~~v~l~GGv~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 206 LAELIKAVLKRLGPEK-----EPVVLSGGVFKNSPLVKALRDALKEKLPKV---PIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHTCTCCC-----CSEEEESGGGGCHHHHHHHGGGS-HHHHCC---TCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCC-----CeEEEECCccCchHHHHHHHHHHHHhcCCC---ceEECCCCCccHHHHHHHhC
Confidence 5555555555554321 129999999888778887877776665542 22334467899999999886
No 75
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=72.53 E-value=3.4 Score=39.82 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=24.8
Q ss_pred CCcEEEEecCCCceEEEeccCceeccc
Q 013888 150 TQCSLVVDCGFSFTHAAPVFQNFTVNY 176 (434)
Q Consensus 150 ~~tglVVDiG~~~t~v~pV~dG~~~~~ 176 (434)
..+++++|||..+|+|+||.+|.+...
T Consensus 127 ~~~~I~~DmGGTTtDi~~i~~G~p~~~ 153 (318)
T TIGR03123 127 IPECLFVDMGSTTTDIIPIIDGEVAAK 153 (318)
T ss_pred CCCEEEEEcCccceeeEEecCCEeeee
Confidence 678999999999999999999998764
No 76
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=69.39 E-value=25 Score=33.09 Aligned_cols=95 Identities=12% Similarity=0.107 Sum_probs=60.6
Q ss_pred HHHHHHHHhhhcCCceeeeccccccccccccccCCCCCCCCCCcEEEEecCCCceEEEeccCceecccccEEecccHHHH
Q 013888 109 QRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKAL 188 (434)
Q Consensus 109 re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l 188 (434)
-+.+++.+=+.++++.-.-..++-|+..+.....++ ..--.|+|+|.++|+..-|-...-+. ...+-=+|+-+
T Consensus 97 M~~iA~~l~~~lgv~V~igGvEAemAi~GALTTPGt-----~~PlaIlDmG~GSTDAsii~~~g~v~--~iHlAGAG~mV 169 (332)
T PF08841_consen 97 MQMIADELEEELGVPVEIGGVEAEMAILGALTTPGT-----DKPLAILDMGGGSTDASIINRDGEVT--AIHLAGAGNMV 169 (332)
T ss_dssp CHHHHHHHHHHHTSEEEEECEHHHHHHHHHTTSTT-------SSEEEEEE-SSEEEEEEE-TTS-EE--EEEEE-SHHHH
T ss_pred HHHHHHHHHHHHCCceEEccccHHHHHhcccCCCCC-----CCCeEEEecCCCcccHHHhCCCCcEE--EEEecCCchhh
Confidence 367888888999999988888999988854332211 22335889999999977665433222 12234467888
Q ss_pred HHHHHHHHhhcCCCCCChHHHHHHHHhh
Q 013888 189 TNYLKELVSYRAINVMDETFIIDDVKEK 216 (434)
Q Consensus 189 ~~~l~~ll~~~~~~~~~~~~~~~~iKe~ 216 (434)
|-.+..-|- ..+..+.|+||..
T Consensus 170 TmlI~sELG------l~d~~lAE~IKky 191 (332)
T PF08841_consen 170 TMLINSELG------LEDRELAEDIKKY 191 (332)
T ss_dssp HHHHHHHCT-------S-HHHHHHHHHS
T ss_pred HHHHHHhhC------CCCHHHHHHhhhc
Confidence 877776653 2356788888864
No 77
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=69.09 E-value=7.8 Score=36.18 Aligned_cols=48 Identities=25% Similarity=0.266 Sum_probs=35.5
Q ss_pred CCcEEEEecCCCceEEEeccCceecccccEEe----cccHHHHHHHHHHHHh
Q 013888 150 TQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRI----DLGGKALTNYLKELVS 197 (434)
Q Consensus 150 ~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~----~~GG~~l~~~l~~ll~ 197 (434)
+.+=+.|.+|...|.++.|.+|.++..-.-+. -.||-.++..+...|.
T Consensus 162 k~nfIavE~G~aytaavaV~nGkIVDGmgGttgf~gylg~g~MD~ElAYaLa 213 (374)
T COG2441 162 KVNFIAVEIGFAYTAAVAVKNGKIVDGMGGTTGFTGYLGGGAMDGELAYALA 213 (374)
T ss_pred hhhhHHHhhhccceeEEEEECCEEEeccCCccCcccccccccccHHHHHHHH
Confidence 34457899999999999999999998543333 4566667777766664
No 78
>PRK13321 pantothenate kinase; Reviewed
Probab=66.00 E-value=38 Score=31.57 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=16.1
Q ss_pred eEEEEcCCcceEEeecCCC
Q 013888 4 IVVLDNGGGLIKAGHGGER 22 (434)
Q Consensus 4 ~vViD~Gs~~~k~G~ag~~ 22 (434)
.+.||+|..++|+|+..++
T Consensus 2 iL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 3789999999999988654
No 79
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=61.83 E-value=99 Score=28.79 Aligned_cols=19 Identities=16% Similarity=0.121 Sum_probs=16.0
Q ss_pred eEEEEcCCcceEEeecCCC
Q 013888 4 IVVLDNGGGLIKAGHGGER 22 (434)
Q Consensus 4 ~vViD~Gs~~~k~G~ag~~ 22 (434)
-++||+|-.+++.|+-.+.
T Consensus 2 ~L~iDiGNT~~~~a~~~~~ 20 (251)
T COG1521 2 LLLIDIGNTRIVFALYEGG 20 (251)
T ss_pred eEEEEeCCCeEEEEEecCC
Confidence 3789999999999988743
No 80
>PRK13324 pantothenate kinase; Reviewed
Probab=55.33 E-value=1.6e+02 Score=27.53 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=15.5
Q ss_pred eEEEEcCCcceEEeecCC
Q 013888 4 IVVLDNGGGLIKAGHGGE 21 (434)
Q Consensus 4 ~vViD~Gs~~~k~G~ag~ 21 (434)
.+.||+|-.++|.|+..+
T Consensus 2 iL~iDiGNT~ik~gl~~~ 19 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDG 19 (258)
T ss_pred EEEEEeCCCceEEEEEEC
Confidence 578999999999998754
No 81
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=53.27 E-value=19 Score=34.06 Aligned_cols=67 Identities=18% Similarity=0.143 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHhcChhhHHHhHcCeEEecCCCCCcChHHHHHHhhcccCCCCceEEEecCCCCCccccchhhhhc
Q 013888 331 GLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLA 405 (434)
Q Consensus 331 ~l~~~I~~~i~~~~~d~r~~l~~nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasila 405 (434)
.|...+.+.+.-++++ .|+|.|+.+..+-|.+++++.+..... ...+.+..+.-...++-+||+.++
T Consensus 220 ~la~~l~~l~~~~dpe-------~IvlgG~~~~~~~~~~~i~~~l~~~~~-~~~~~i~~s~~~~~~~~~GAa~~~ 286 (291)
T PRK05082 220 AIARLIADLKATLDCQ-------CVVLGGSVGLAEGYLELVQAYLAQEPA-IYHVPLLAAHYRHDAGLLGAALWA 286 (291)
T ss_pred HHHHHHHHHHHHhCCC-------EEEEcCccccHHHHHHHHHHHHHhccc-ccCCeEEECccCCchhhhhHHHHh
Confidence 3666677766667665 577877776667788888887776422 123455555444556778988765
No 82
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=52.60 E-value=83 Score=29.38 Aligned_cols=26 Identities=38% Similarity=0.327 Sum_probs=22.4
Q ss_pred CCCcEEEEecCCCceEEEeccCceec
Q 013888 149 ETQCSLVVDCGFSFTHAAPVFQNFTV 174 (434)
Q Consensus 149 ~~~tglVVDiG~~~t~v~pV~dG~~~ 174 (434)
...-++|||+|.+.|+..-|-++++.
T Consensus 225 aa~palvVd~GngHttaalvdedRI~ 250 (342)
T COG4012 225 AADPALVVDYGNGHTTAALVDEDRIV 250 (342)
T ss_pred ccCceEEEEccCCceEEEEecCCeEE
Confidence 35578999999999999999998764
No 83
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=51.30 E-value=91 Score=28.83 Aligned_cols=18 Identities=17% Similarity=0.215 Sum_probs=15.3
Q ss_pred EEEEcCCcceEEeecCCC
Q 013888 5 VVLDNGGGLIKAGHGGER 22 (434)
Q Consensus 5 vViD~Gs~~~k~G~ag~~ 22 (434)
++||+|-.++++|+..++
T Consensus 2 L~iDiGNT~i~~g~~~~~ 19 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGN 19 (243)
T ss_pred EEEEECCCcEEEEEEECC
Confidence 689999999999977554
No 84
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=48.13 E-value=13 Score=36.76 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=20.7
Q ss_pred HcCeEEecCCCCCcChHHHHHHhhcc
Q 013888 352 YESIILTGGSTLFPRFAERLERELRP 377 (434)
Q Consensus 352 ~~nIiltGG~s~~~G~~~RL~~eL~~ 377 (434)
...|+||||++.=+-+.+||++.|..
T Consensus 285 ~~~v~v~GGGa~N~~L~~~L~~~l~~ 310 (364)
T PF03702_consen 285 PDEVYVCGGGARNPFLMERLQERLPG 310 (364)
T ss_dssp -EEEEEESGGGG-HHHHHHHHHH-TT
T ss_pred CceEEEECCCcCCHHHHHHHHhhCCC
Confidence 45799999999999999999998854
No 85
>PRK13318 pantothenate kinase; Reviewed
Probab=47.00 E-value=1.1e+02 Score=28.48 Aligned_cols=113 Identities=19% Similarity=0.178 Sum_probs=0.0
Q ss_pred EEEEcCCcceEEeecCC--CCCCeeeecCceeeCCCCceecCcccccccccccccceeecccCCCcccChHHHHHHHHHH
Q 013888 5 VVLDNGGGLIKAGHGGE--RDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDIWAHL 82 (434)
Q Consensus 5 vViD~Gs~~~k~G~ag~--~~P~~~~ps~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~p~~~g~i~~~d~~e~il~~~ 82 (434)
+.||+|..++|+|+..+ -..+..+|+..... .+.+...++.+
T Consensus 3 L~IDIGnT~iK~al~d~g~i~~~~~~~t~~~~~------------------------------------~~~~~~~l~~l 46 (258)
T PRK13318 3 LAIDVGNTNTVFGLYEGGKLVAHWRISTDSRRT------------------------------------ADEYGVWLKQL 46 (258)
T ss_pred EEEEECCCcEEEEEEECCEEEEEEEEeCCCCCC------------------------------------HHHHHHHHHHH
Q ss_pred hhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccc-------------------cccccccccCC
Q 013888 83 FSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPS-------------------LVHLYEASRRP 143 (434)
Q Consensus 83 ~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~-------------------ls~~~~~~~~~ 143 (434)
+. ..+.++.+-.-+.+-... +...+.+.+.+-..++.+-++...... ++++....+.
T Consensus 47 ~~-~~~~~~~~i~~I~issVv--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~y~np~~lG~DR~a~~~aa~~~~- 122 (258)
T PRK13318 47 LG-LSGLDPEDITGIIISSVV--PSVMHSLERMCRKYFNIEPLVVVGPGVKTGINIKVDNPKEVGADRIVNAVAAYELY- 122 (258)
T ss_pred HH-HcCCCcccCceEEEEEec--CchHHHHHHHHHHHhCCCCeEEECCCcCCCCceecCChhhcchHHHHHHHHHHHHc-
Q ss_pred CCCCCCCCcEEEEecCCCce
Q 013888 144 YGLLSETQCSLVVDCGFSFT 163 (434)
Q Consensus 144 ~g~~~~~~tglVVDiG~~~t 163 (434)
....+|||+|...|
T Consensus 123 ------~~~~ivid~GTA~t 136 (258)
T PRK13318 123 ------GGPLIVVDFGTATT 136 (258)
T ss_pred ------CCCEEEEEcCCceE
No 86
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=46.35 E-value=42 Score=30.64 Aligned_cols=45 Identities=20% Similarity=0.127 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCc
Q 013888 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFK 123 (434)
Q Consensus 73 d~~e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~ 123 (434)
|.++.|=+|+|. .+++||||+-...++.+..++++++|-|.||=.
T Consensus 74 dv~~~I~~~AF~------~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd~ 118 (229)
T cd08627 74 DVLHTIKEHAFV------TSEYPIILSIEDHCSIVQQRNMAQHFKKVFGDM 118 (229)
T ss_pred HHHHHHHHhhcc------CCCCCEEEEEcccCCHHHHHHHHHHHHHHHhhh
Confidence 344555555554 578999999999999999999999999998863
No 87
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=45.91 E-value=41 Score=31.34 Aligned_cols=45 Identities=16% Similarity=0.087 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCc
Q 013888 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFK 123 (434)
Q Consensus 73 d~~e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~ 123 (434)
|.++.|=+++|. .+++||||+-...++.+..++++++|-|.||=.
T Consensus 74 ~v~~~I~~~AF~------~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~~Gd~ 118 (258)
T cd08630 74 DVIQAVRQHAFT------ASPYPVILSLENHCGLEQQAAMARHLQTILGDM 118 (258)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEeeccCCHHHHHHHHHHHHHHHhhh
Confidence 445555555654 578999999999999999999999999988753
No 88
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=45.43 E-value=43 Score=31.05 Aligned_cols=45 Identities=18% Similarity=0.103 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCc
Q 013888 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFK 123 (434)
Q Consensus 73 d~~e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~ 123 (434)
|.++.|=+++|. .+++||||+-...++.+..++++++|-|.||=.
T Consensus 74 dv~~aI~~~AF~------~S~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd~ 118 (253)
T cd08632 74 DVIETINKYAFV------KNEFPVILSIENHCSIQQQKKIAQYLKEIFGDK 118 (253)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEecccCCHHHHHHHHHHHHHHHhhh
Confidence 445555556653 578999999999999999999999999888743
No 89
>TIGR03367 queuosine_QueD queuosine biosynthesis protein QueD. Members of this protein family, closely related to eukaryotic 6-pyruvoyl tetrahydrobiopterin synthase enzymes, are the QueD protein of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of tRNAs for Tyr, His, Asp, and Asn in many species. This modification, although widespread, appears not to be important for viability. The queuosine precursor made by this enzyme may be converted instead to archeaosine as in some Archaea.
Probab=45.38 E-value=43 Score=25.77 Aligned_cols=49 Identities=12% Similarity=0.234 Sum_probs=34.1
Q ss_pred CCCcccChHHHHHHHHHHhhccCCCCCCCCcEEEeccCC-CCHHHHHHHHHHHhhhcC
Q 013888 65 DRGYLINSDLQRDIWAHLFSSLLHISPSASSLLLTEPLF-ALPSIQRATDELVFEDFN 121 (434)
Q Consensus 65 ~~g~i~~~d~~e~il~~~~~~~L~~~~~~~~vll~e~~~-~~~~~re~l~e~lfE~~~ 121 (434)
..|++.|+..++.+++.+... | ++..|.-.+++ +| .-|.+++.+|+.+.
T Consensus 42 ~~g~v~Df~~lk~~~~~i~~~-l-----Dh~~Lne~~~~~~p--T~E~ia~~i~~~l~ 91 (92)
T TIGR03367 42 EAGMVMDFSDLKAIVKEVVDR-L-----DHALLNDVPGLENP--TAENLARWIYDRLK 91 (92)
T ss_pred CccEEEEHHHHHHHHHHHHHh-C-----CCcEeeCCCCCCCC--CHHHHHHHHHHHHh
Confidence 479999999999998876642 2 35555544444 33 34889999998753
No 90
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=45.35 E-value=42 Score=31.23 Aligned_cols=45 Identities=18% Similarity=0.052 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCc
Q 013888 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFK 123 (434)
Q Consensus 73 d~~e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~ 123 (434)
|.++.|=+++|. .+++||||+-...++....++++++|-|.||=.
T Consensus 76 dv~~aI~~~AF~------~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd~ 120 (257)
T cd08626 76 DVIQAIKDTAFV------TSDYPVILSFENHCSKPQQYKLAKYCEEIFGDL 120 (257)
T ss_pred HHHHHHHHHhcc------cCCCCEEEEEeccCCHHHHHHHHHHHHHHHhHh
Confidence 455666666664 468999999999999999999999999988754
No 91
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=45.07 E-value=43 Score=31.22 Aligned_cols=44 Identities=9% Similarity=0.021 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCC
Q 013888 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNF 122 (434)
Q Consensus 73 d~~e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~ 122 (434)
|.++.|=+++|. .+++||||+-...++....++++++|-|.||=
T Consensus 74 ~v~~~I~~~AF~------~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~lgd 117 (257)
T cd08595 74 EVITTVEKYAFE------KSDYPVVLSLENHCSTEQQEIMAHYLVSILGE 117 (257)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 445555555554 67899999999999999999999999988875
No 92
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=44.62 E-value=28 Score=33.18 Aligned_cols=60 Identities=10% Similarity=0.001 Sum_probs=39.1
Q ss_pred HHHHHhhhcCCceeeeccccccccccccccCCCCCCCCCCcEEEEecCCCceEEEeccCceeccc
Q 013888 112 TDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNY 176 (434)
Q Consensus 112 l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~ 176 (434)
+.+.+=+.+++| |++.++.-++++...- .|......+-+.|.+|.+ .-..-|.+|.++..
T Consensus 88 l~~~l~~~~~~p-V~ieNDa~aaalaE~~---~g~~~~~~~~~~l~~gtG-iG~giv~~G~l~~G 147 (303)
T PRK13310 88 LRADLSARLGRD-VRLDNDANCFALSEAW---DDEFTQYPLVMGLILGTG-VGGGLVFNGKPISG 147 (303)
T ss_pred HHHHHHHHHCCC-eEEeccHhHHHHHHhh---hccccCCCcEEEEEecCc-eEEEEEECCEEeeC
Confidence 444455667888 7888888777763321 111112567888999974 56777889988764
No 93
>PRK09557 fructokinase; Reviewed
Probab=44.09 E-value=30 Score=32.97 Aligned_cols=66 Identities=23% Similarity=0.282 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhcChhhHHHhHcCeEEecCCCCCcChHHHHHHhhcccCCC-CceEEEecCCCCCccccchhhhh
Q 013888 332 LAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPD-DYQVKITTQEDPLLGVWRGGSLL 404 (434)
Q Consensus 332 l~~~I~~~i~~~~~d~r~~l~~nIiltGG~s~~~G~~~RL~~eL~~~~~~-~~~v~v~~~~~~~~~~w~Gasil 404 (434)
|..+|...+.-++++ .|+|.||.+..+-|.+.|++.+...... ...+.|..+.-...+.-+||..+
T Consensus 232 La~~l~~l~~~ldP~-------~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~ 298 (301)
T PRK09557 232 LAKSLAHVINILDPD-------VIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWL 298 (301)
T ss_pred HHHHHHHHHHHhCCC-------EEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHh
Confidence 566666666666665 5778777777777888888888765431 12444544443344566787664
No 94
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=43.81 E-value=46 Score=31.02 Aligned_cols=44 Identities=18% Similarity=0.101 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCC
Q 013888 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNF 122 (434)
Q Consensus 73 d~~e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~ 122 (434)
|.++.|=+++|. .+++||||+-...++.+..++++++|-|.||=
T Consensus 74 ~v~~~I~~~AF~------~S~yPvIlsLE~Hcs~~qQ~~ma~~l~~~lGd 117 (258)
T cd08629 74 DVLRAIRDYAFK------ASPYPVILSLENHCSLEQQRVMARHLRAILGP 117 (258)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 445555556654 57899999999999999999999999998875
No 95
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=43.71 E-value=47 Score=30.91 Aligned_cols=44 Identities=20% Similarity=0.132 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCC
Q 013888 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNF 122 (434)
Q Consensus 73 d~~e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~ 122 (434)
|.++.|=+++|. .+++||||+-...++.+..++++++|-|.||=
T Consensus 74 dv~~~I~~~AF~------~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~~Gd 117 (254)
T cd08596 74 DVVEAINRSAFI------TSDYPVILSIENHCSLQQQRKMAEIFKTVFGE 117 (254)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 345555556654 46899999999999999999999999988874
No 96
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=43.27 E-value=46 Score=31.04 Aligned_cols=44 Identities=14% Similarity=0.055 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCC
Q 013888 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNF 122 (434)
Q Consensus 73 d~~e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~ 122 (434)
|.++.|=+++|. .+++||||+-...++.+..++++++|-|.||=
T Consensus 74 ~v~~~I~~~aF~------~s~yPvIlslE~Hcs~~qQ~~~a~~~~~~~g~ 117 (257)
T cd08593 74 DVIQAIREYAFK------VSPYPVILSLENHCSVEQQKVMAQHLKSILGD 117 (257)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 445555555554 57899999999999999999999999998875
No 97
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=43.13 E-value=47 Score=30.98 Aligned_cols=44 Identities=14% Similarity=0.030 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCC
Q 013888 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNF 122 (434)
Q Consensus 73 d~~e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~ 122 (434)
|.++.|=+++|. .+++||||+-...++....++++++|-|.||=
T Consensus 74 ~v~~~Ik~~AF~------~s~yPvIlslE~Hc~~~qQ~~ma~~l~~~lGd 117 (258)
T cd08631 74 DVVAAVAQYAFQ------VSDYPVILSLENHCGVEQQQTMAQHLTEILGE 117 (258)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 344555555553 47899999999999999999999999988874
No 98
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=43.10 E-value=49 Score=30.18 Aligned_cols=44 Identities=14% Similarity=0.050 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCC
Q 013888 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNF 122 (434)
Q Consensus 73 d~~e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~ 122 (434)
|.++.|=+++|. .+++||||+-...++.+..++++++|-|.||=
T Consensus 74 dv~~aI~~~AF~------~s~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd 117 (227)
T cd08594 74 DVIETINKYAFI------KNEYPVILSIENHCSVQQQKKMAQYLKEILGD 117 (227)
T ss_pred HHHHHHHHhhcc------CCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 445555555554 47899999999999999999999999988874
No 99
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=41.91 E-value=52 Score=30.56 Aligned_cols=45 Identities=16% Similarity=0.082 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCc
Q 013888 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFK 123 (434)
Q Consensus 73 d~~e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~ 123 (434)
|.++.|=+++|. .+++||||+-...++.+..++++++|-|.||=.
T Consensus 74 ~v~~~I~~~AF~------~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd~ 118 (254)
T cd08633 74 DVIETINKYAFI------KNEYPVILSIENHCSVPQQKKMAQYLTEILGDK 118 (254)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEecccCCHHHHHHHHHHHHHHHhHh
Confidence 445555566664 478999999999999999999999999888743
No 100
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=41.89 E-value=51 Score=30.71 Aligned_cols=45 Identities=20% Similarity=0.098 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCc
Q 013888 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFK 123 (434)
Q Consensus 73 d~~e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~ 123 (434)
|.++.|=+++|. .+++||||+-...++.+..++++++|-|.||=.
T Consensus 76 ~v~~aIk~~AF~------~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd~ 120 (257)
T cd08591 76 DVIEAIAETAFK------TSEYPVILSFENHCSSKQQAKMAEYCREIFGDL 120 (257)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 344555555554 578999999999999999999999999988753
No 101
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=41.65 E-value=53 Score=30.04 Aligned_cols=45 Identities=22% Similarity=0.178 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCc
Q 013888 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFK 123 (434)
Q Consensus 73 d~~e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~ 123 (434)
|.++.|=+++|. .+++||||+-...++.+..++++++|-|.||=.
T Consensus 74 dv~~~I~~~aF~------~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd~ 118 (229)
T cd08592 74 DVLKTIKEHAFV------TSEYPVILSIENHCSLPQQRNMAQAFKEVFGDM 118 (229)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEEecCCCHHHHHHHHHHHHHHHhHH
Confidence 344555555553 578999999999999999999999999988753
No 102
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=40.96 E-value=28 Score=32.93 Aligned_cols=68 Identities=13% Similarity=-0.017 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHhcCh-hhHHHhHcCeEEecC-CCCCcChHHHHHHhhcccCCCCceEEEecCCCCCccccchhhh
Q 013888 331 GLAECIVRAVNSCHP-YLHSVLYESIILTGG-STLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSL 403 (434)
Q Consensus 331 ~l~~~I~~~i~~~~~-d~r~~l~~nIiltGG-~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi 403 (434)
+|-.||.+.|..+.. --+..-.++|+++|| ....|.+.+++..-+.- +..+..-+.+..|..-+||.+
T Consensus 209 SLl~mV~~nIg~lA~~~a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~-----~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 209 SLLGLIGNNIGQIAYLCALRYNIDRIVFIGSFLRNNQLLMKVLSYATNF-----WSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeEEEECCcccCCHHHHHHHHHHHhh-----cCceEEEECCcchHHHhhhcc
Confidence 567777777765543 224555889999999 66789999999877652 335666666777777788764
No 103
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=40.17 E-value=57 Score=29.91 Aligned_cols=44 Identities=25% Similarity=0.216 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCC
Q 013888 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNF 122 (434)
Q Consensus 73 d~~e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~ 122 (434)
|.++.|=+++|. .+++||||+-...++.+..+.++++|-|.||=
T Consensus 74 dv~~~Ik~~aF~------~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lG~ 117 (231)
T cd08598 74 DVCRAIKKYAFV------TSPYPLILSLEVHCDAEQQERMVEIMKETFGD 117 (231)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 344555555553 47899999999999999999999999998885
No 104
>PRK09698 D-allose kinase; Provisional
Probab=37.48 E-value=55 Score=31.13 Aligned_cols=59 Identities=14% Similarity=0.060 Sum_probs=37.4
Q ss_pred HHHHHhhhcCCceeeeccccccccccccccCCCCCCCCCCcEEEEecCCCceEEEeccCceeccc
Q 013888 112 TDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNY 176 (434)
Q Consensus 112 l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~ 176 (434)
+.+.|=+.+++| +++.+++-+++++.......+ ..+.+.|.+|.+ .-..-|.+|.++..
T Consensus 96 l~~~l~~~~~~p-v~v~NDa~aaa~~E~~~~~~~----~~~~~~v~lgtG-IG~giv~~G~~~~G 154 (302)
T PRK09698 96 LADKLENTLNCP-VFFSRDVNLQLLWDVKENNLT----QQLVLGAYLGTG-MGFAVWMNGAPWTG 154 (302)
T ss_pred HHHHHHHHhCCC-EEEcchHhHHHHHHHHhcCCC----CceEEEEEecCc-eEEEEEECCEEeeC
Confidence 444444567888 778887777766332110122 457888999965 45566779988763
No 105
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=37.44 E-value=64 Score=30.16 Aligned_cols=45 Identities=20% Similarity=0.079 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCc
Q 013888 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFK 123 (434)
Q Consensus 73 d~~e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~ 123 (434)
|.++.|=+++|. .+++||||+-...++.+..++++++|-|.||=.
T Consensus 74 dv~~~I~~~aF~------~s~yPvIlslE~Hc~~~qQ~~~a~~l~~~lG~~ 118 (260)
T cd08597 74 SVIEAINEYAFV------ASEYPLILCIENHCSEKQQLVMAQYLKEIFGDK 118 (260)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 445555555554 468999999999999999999999999888753
No 106
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=35.60 E-value=76 Score=29.01 Aligned_cols=45 Identities=20% Similarity=0.150 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCc
Q 013888 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFK 123 (434)
Q Consensus 73 d~~e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~ 123 (434)
|.++.|=+++|. .+++||||+....++.+..++++++|-+.||=.
T Consensus 74 dv~~~Ik~~aF~------~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lGd~ 118 (226)
T cd08558 74 DVIEAIKEYAFV------TSPYPVILSLENHCSLEQQKKMAQILKEIFGDK 118 (226)
T ss_pred HHHHHHHHHhcc------cCCCCeEEEEecCCCHHHHHHHHHHHHHHHhhh
Confidence 445555566654 468999999999999999999999999988754
No 107
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=34.23 E-value=80 Score=29.40 Aligned_cols=44 Identities=23% Similarity=0.199 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCC
Q 013888 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNF 122 (434)
Q Consensus 73 d~~e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~ 122 (434)
|.++.|=+++|. .+++||||+-...++.+..++++++|-|.||=
T Consensus 74 dv~~~I~~~AF~------~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (254)
T cd08628 74 DVVQAIKDHAFV------TSEYPVILSIEEHCSVEQQRHMAKVFKEVFGD 117 (254)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEEeccCCHHHHHHHHHHHHHHHhH
Confidence 345555555554 46899999999999999999999999988875
No 108
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=34.16 E-value=79 Score=29.49 Aligned_cols=45 Identities=20% Similarity=0.103 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhccCCCCCCCCcEEEeccCCC-CHHHHHHHHHHHhhhcCCc
Q 013888 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFA-LPSIQRATDELVFEDFNFK 123 (434)
Q Consensus 73 d~~e~il~~~~~~~L~~~~~~~~vll~e~~~~-~~~~re~l~e~lfE~~~~~ 123 (434)
|.++.|=+++|. .+++||||+-...+ +....++++++|-|.||=.
T Consensus 76 dv~~~I~~~AF~------~S~yPvIlSlE~Hc~s~~qQ~~ma~~l~~~lGd~ 121 (258)
T cd08623 76 EVIEAIAECAFK------TSPFPILLSFENHVDSPKQQAKMAEYCRLIFGDA 121 (258)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEehhcCCCHHHHHHHHHHHHHHHhhh
Confidence 445555566664 57899999999888 4788899999999988753
No 109
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=31.35 E-value=92 Score=29.11 Aligned_cols=44 Identities=20% Similarity=0.119 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhccCCCCCCCCcEEEeccCCC-CHHHHHHHHHHHhhhcCC
Q 013888 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFA-LPSIQRATDELVFEDFNF 122 (434)
Q Consensus 73 d~~e~il~~~~~~~L~~~~~~~~vll~e~~~~-~~~~re~l~e~lfE~~~~ 122 (434)
|.++.|=+++|. .+++||||+-...+ +....++++++|-|.||=
T Consensus 76 dv~~~I~~~AF~------~s~yPvIlslE~Hc~s~~qQ~~ma~~l~~~lGd 120 (261)
T cd08624 76 DAIEAIAESAFK------TSPYPVILSFENHVDSPKQQAKMAEYCRTIFGD 120 (261)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEehhcCCCHHHHHHHHHHHHHHHhh
Confidence 445555566664 47899999998888 678888999999999886
No 110
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=29.88 E-value=93 Score=29.08 Aligned_cols=44 Identities=18% Similarity=0.089 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhccCCCCCCCCcEEEeccCCC-CHHHHHHHHHHHhhhcCC
Q 013888 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFA-LPSIQRATDELVFEDFNF 122 (434)
Q Consensus 73 d~~e~il~~~~~~~L~~~~~~~~vll~e~~~~-~~~~re~l~e~lfE~~~~ 122 (434)
|.++.|=+++|. .+++||||+-...+ +.+..++++++|-|.||-
T Consensus 76 dv~~~I~~~aF~------~s~yPvIlslE~Hc~s~~qQ~~ma~~l~~ilGd 120 (258)
T cd08625 76 DVIEAIAESAFK------TSPYPVILSFENHVDSAKQQAKMAEYCRSIFGD 120 (258)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEehhcCCCHHHHHHHHHHHHHHHHH
Confidence 445555556664 46799999998888 578889999999888875
No 111
>PF09693 Phage_XkdX: Phage uncharacterised protein (Phage_XkdX); InterPro: IPR010022 This entry is represented by Bacteriophage 69, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=29.63 E-value=27 Score=22.34 Aligned_cols=10 Identities=50% Similarity=0.683 Sum_probs=8.8
Q ss_pred ceeehhHHhh
Q 013888 413 MCVTKAEYEE 422 (434)
Q Consensus 413 ~~Itr~ey~e 422 (434)
.|||++||+|
T Consensus 25 g~IT~eey~e 34 (40)
T PF09693_consen 25 GWITKEEYKE 34 (40)
T ss_pred CeECHHHHHH
Confidence 4999999987
No 112
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=29.14 E-value=52 Score=32.49 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=21.5
Q ss_pred cCeEEecCCCCCcChHHHHHHhhc
Q 013888 353 ESIILTGGSTLFPRFAERLERELR 376 (434)
Q Consensus 353 ~nIiltGG~s~~~G~~~RL~~eL~ 376 (434)
..|++|||++.=+-+.+||+++|.
T Consensus 288 ~~vlv~GGGa~N~~Lm~~L~~~l~ 311 (365)
T PRK09585 288 DELLVCGGGARNPTLMERLAALLP 311 (365)
T ss_pred CEEEEECCCcchHHHHHHHHHhcC
Confidence 359999999999999999999883
No 113
>PRK00976 hypothetical protein; Provisional
Probab=28.68 E-value=83 Score=30.47 Aligned_cols=26 Identities=19% Similarity=-0.063 Sum_probs=23.4
Q ss_pred CCcEEEEecCCCceEEEeccCceeccc
Q 013888 150 TQCSLVVDCGFSFTHAAPVFQNFTVNY 176 (434)
Q Consensus 150 ~~tglVVDiG~~~t~v~pV~dG~~~~~ 176 (434)
..+=+|+|+|+ .|..+.|-+|.++..
T Consensus 148 ~~~fi~~diss-ntv~~~V~~gkIvgg 173 (326)
T PRK00976 148 FENFIVSDISS-NTVTLLVKDGKIVGA 173 (326)
T ss_pred CCcEEEEeccc-cEEEEEEECCEEEcc
Confidence 68889999999 899999999998864
No 114
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=28.61 E-value=1.3e+02 Score=26.40 Aligned_cols=22 Identities=9% Similarity=0.203 Sum_probs=18.7
Q ss_pred ccCCCcccChHHHHHHHHHHhh
Q 013888 63 PIDRGYLINSDLQRDIWAHLFS 84 (434)
Q Consensus 63 p~~~g~i~~~d~~e~il~~~~~ 84 (434)
-+++|.|.|.+.+.+.++.++.
T Consensus 36 gi~~G~I~d~~~~~~~I~~ai~ 57 (187)
T smart00842 36 GIRKGVIVDIEAAARAIREAVE 57 (187)
T ss_pred CccCcEEECHHHHHHHHHHHHH
Confidence 4889999999998888888775
No 115
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=27.01 E-value=69 Score=29.78 Aligned_cols=26 Identities=27% Similarity=0.158 Sum_probs=22.9
Q ss_pred CCcEEEEecCCCceEEEeccCceecc
Q 013888 150 TQCSLVVDCGFSFTHAAPVFQNFTVN 175 (434)
Q Consensus 150 ~~tglVVDiG~~~t~v~pV~dG~~~~ 175 (434)
....+|||+|.+.|...-|.+|++.-
T Consensus 166 ~~~~~~vniGN~HTlaa~v~~~rI~G 191 (254)
T PF08735_consen 166 REGIIVVNIGNGHTLAALVKDGRIYG 191 (254)
T ss_pred cCCeEEEEeCCccEEEEEEeCCEEEE
Confidence 55779999999999999999998854
No 116
>TIGR01669 phage_XkdX phage uncharacterized protein, XkdX family. This model represents a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=26.65 E-value=28 Score=22.91 Aligned_cols=10 Identities=20% Similarity=0.474 Sum_probs=8.7
Q ss_pred ceeehhHHhh
Q 013888 413 MCVTKAEYEE 422 (434)
Q Consensus 413 ~~Itr~ey~e 422 (434)
.|||.+||+|
T Consensus 30 ~~IT~eey~e 39 (45)
T TIGR01669 30 KLITREQYKV 39 (45)
T ss_pred CccCHHHHHH
Confidence 5999999987
No 117
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.94 E-value=60 Score=34.89 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=22.5
Q ss_pred CCc--EEEEecCCCceEEEeccCceecc
Q 013888 150 TQC--SLVVDCGFSFTHAAPVFQNFTVN 175 (434)
Q Consensus 150 ~~t--glVVDiG~~~t~v~pV~dG~~~~ 175 (434)
..+ ++++|||..+|++.-|.+|.+..
T Consensus 275 ~~~g~~i~~DmGGTStDva~i~~G~pe~ 302 (674)
T COG0145 275 LKAGNAIVFDMGGTSTDVALIIDGEPEI 302 (674)
T ss_pred cccCCEEEEEcCCcceeeeeeecCcEEe
Confidence 444 99999999999999999888764
No 118
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=24.81 E-value=1.6e+02 Score=27.04 Aligned_cols=47 Identities=19% Similarity=0.295 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeee
Q 013888 74 LQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFV 127 (434)
Q Consensus 74 ~~e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~ 127 (434)
.++.|=+++| ..+++||||+....++.....+++++|-+.|| ..++.
T Consensus 75 vl~~I~~~aF------~~s~yPvILslE~hcs~~qQ~~~a~~l~~~lG-d~L~~ 121 (228)
T cd08599 75 CIKAIKENAF------TASEYPVIITLENHLSPELQAKAAQILRETLG-DKLFY 121 (228)
T ss_pred HHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHh-hhhcc
Confidence 3444444444 34789999999999999988999999999998 44443
No 119
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=24.47 E-value=66 Score=29.73 Aligned_cols=42 Identities=31% Similarity=0.541 Sum_probs=32.7
Q ss_pred CCcChHHHHHHhhcccCCC-CceEEEecCCCCCccccchhhhhcCc
Q 013888 363 LFPRFAERLERELRPLVPD-DYQVKITTQEDPLLGVWRGGSLLASS 407 (434)
Q Consensus 363 ~~~G~~~RL~~eL~~~~~~-~~~v~v~~~~~~~~~~w~Gasila~l 407 (434)
..|+|.+++++-|..+.+. ..+|.+.... .++=+||+|+|..
T Consensus 198 ~~p~f~~~l~~~l~~L~~~~~~~v~~~~~~---dgsg~GAAi~AA~ 240 (243)
T PF03727_consen 198 KYPNFRERLQEALDELLPEEGCKVEFVLSE---DGSGVGAAIAAAV 240 (243)
T ss_dssp HSTTHHHHHHHHHHHHSTT-CEEEEEEE-S---STHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHhcccccceEEEEEec---CchHHHHHHHHHH
Confidence 4899999999999999986 4467776663 4678999998753
No 120
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=23.41 E-value=90 Score=28.26 Aligned_cols=58 Identities=21% Similarity=0.380 Sum_probs=36.6
Q ss_pred hhhHHHhHcCeEEecCCCCCcChHHHHHHhhcccCCCCceEEEecCC-CCCccccchhhhhcCc
Q 013888 345 PYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQE-DPLLGVWRGGSLLASS 407 (434)
Q Consensus 345 ~d~r~~l~~nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~-~~~~~~w~Gasila~l 407 (434)
.|+-+.--..|+++|.+|. |+... .++....| +.++.++... .|.-.+|+||.+++.+
T Consensus 69 ~DldkyAesDvviVGAGSa--GLsAA--Y~I~~~rP-dlkvaIIE~SVaPGGGaWLGGQLFSAM 127 (328)
T KOG2960|consen 69 KDLDKYAESDVVIVGAGSA--GLSAA--YVIAKNRP-DLKVAIIESSVAPGGGAWLGGQLFSAM 127 (328)
T ss_pred HHHHhhhccceEEECCCcc--cccee--eeeeccCC-CceEEEEEeeecCCCcccccchhhhhh
Confidence 4666666788999998763 22111 12222223 4566666543 6788999999998766
No 121
>PLN02230 phosphoinositide phospholipase C 4
Probab=23.00 E-value=1.4e+02 Score=31.67 Aligned_cols=44 Identities=18% Similarity=0.192 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCC
Q 013888 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNF 122 (434)
Q Consensus 73 d~~e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~ 122 (434)
|.++.|=+|+|. .+++||||+-...++.....+++++|-+.||=
T Consensus 187 ~v~~~I~~~aF~------~s~yPvIlslE~hcs~~~Q~~~a~~~~~~~Gd 230 (598)
T PLN02230 187 KCLDSIKANAFA------ISKYPVIITLEDHLTPKLQFKVAKMITQTFGD 230 (598)
T ss_pred HHHHHHHHhccC------CCCCCeEEEeccCCCHHHHHHHHHHHHHHHhh
Confidence 345555555553 57899999999999999999999999988875
No 122
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=22.82 E-value=92 Score=29.77 Aligned_cols=59 Identities=12% Similarity=0.074 Sum_probs=40.6
Q ss_pred HHHHHhhhcCCceeeeccccccccccccc-cCCCCCCCCCCcEEEEecCCCceEEEeccCceeccc
Q 013888 112 TDELVFEDFNFKSLFVADPPSLVHLYEAS-RRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNY 176 (434)
Q Consensus 112 l~e~lfE~~~~~~v~~~~~~~ls~~~~~~-~~~~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~ 176 (434)
+.+.+=+.+++| +++.+++-++++...- +.+.+ ..+.++|.+|.+. -..-|.+|.++..
T Consensus 89 l~~~l~~~~~~p-v~v~NDa~~~alaE~~~g~~~~----~~~~~~v~igtGi-G~giv~~G~~~~G 148 (318)
T TIGR00744 89 LKEKVEARVGLP-VVVENDANAAALGEYKKGAGKG----ARDVICITLGTGL-GGGIIINGEIRHG 148 (318)
T ss_pred HHHHHHHHHCCC-EEEechHHHHHHHHHHhcccCC----CCcEEEEEeCCcc-EEEEEECCEEeec
Confidence 445555777887 7888888887773321 00122 6788999999865 6777889998763
No 123
>TIGR00039 6PTHBS 6-pyruvoyl tetrahydropterin synthase/QueD family protein. This model has been downgraded from hypothetical_equivalog to subfamily. The animal enzymes are known to be 6-pyruvoyl tetrahydropterin synthase. The function of the bacterial branch of the sequence lineage had been thought to be the same, but many are now taken to be QueD, and enzyme of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of some tRNAs in most species. A new model is built to be the QueD equivalog model.
Probab=22.47 E-value=1.1e+02 Score=24.98 Aligned_cols=50 Identities=12% Similarity=0.183 Sum_probs=33.3
Q ss_pred CCCcccChHHHHHHHHHHhhccCCCCCCCCcEEEeccC--CCCHHHHHHHHHHHhhhcC
Q 013888 65 DRGYLINSDLQRDIWAHLFSSLLHISPSASSLLLTEPL--FALPSIQRATDELVFEDFN 121 (434)
Q Consensus 65 ~~g~i~~~d~~e~il~~~~~~~L~~~~~~~~vll~e~~--~~~~~~re~l~e~lfE~~~ 121 (434)
+.|++.|+..++++++.++...| ||..|.-.++ .+|. -|.++..+++.+.
T Consensus 44 ~~G~viDf~~lk~~~~~~~~~~l-----DH~~Ln~~~~~~~~pT--~Enia~~i~~~l~ 95 (124)
T TIGR00039 44 KTGMVMDFSDLKKIVKEVIDEPL-----DHKLLNDDVNYLENPT--SENVAVYIFDNLK 95 (124)
T ss_pred CceEEEEHHHHHHHHHHHhccCC-----CCceeccCCCCCCCCC--HHHHHHHHHHHHH
Confidence 56999999999999988775423 3555543332 3343 3778888887654
No 124
>PLN02222 phosphoinositide phospholipase C 2
Probab=22.24 E-value=1.4e+02 Score=31.54 Aligned_cols=44 Identities=27% Similarity=0.263 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCc
Q 013888 74 LQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFK 123 (434)
Q Consensus 74 ~~e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~ 123 (434)
.++.|=+|+|. .+++||||+-...++.....+++++|-|.||=.
T Consensus 177 v~~~I~~~aF~------~s~yPvIlslE~Hc~~~qQ~~~a~~~~~~~g~~ 220 (581)
T PLN02222 177 CLKAIRAHAFD------VSDYPVVVTLEDHLTPDLQSKVAEMVTEIFGEI 220 (581)
T ss_pred HHHHHHHhccc------CCCCCEEEEeecCCCHHHHHHHHHHHHHHHhhh
Confidence 44444445543 578999999999999999999999999988853
No 125
>PLN02952 phosphoinositide phospholipase C
Probab=21.98 E-value=1.5e+02 Score=31.33 Aligned_cols=44 Identities=20% Similarity=0.223 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCC
Q 013888 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNF 122 (434)
Q Consensus 73 d~~e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~ 122 (434)
|.++.|=+|+|. .+++||||+-...++....++++++|-|.||=
T Consensus 196 ~v~~~I~~~aF~------~s~yPvIlslE~Hcs~~qQ~~~a~~~~~~~g~ 239 (599)
T PLN02952 196 KCLKSIRDYAFS------SSPYPVIITLEDHLTPDLQAKVAEMATQIFGQ 239 (599)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEeecCCCHHHHHHHHHHHHHHHhh
Confidence 445555555554 46799999999999999999999999998885
No 126
>PLN02228 Phosphoinositide phospholipase C
Probab=20.44 E-value=1.7e+02 Score=30.78 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCc
Q 013888 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFK 123 (434)
Q Consensus 73 d~~e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~ 123 (434)
|.++.|=+++|. .+++||||+-...++....++++++|-|.||=.
T Consensus 179 ~v~~~I~~~AF~------~s~yPvIlslE~hc~~~qQ~~~a~~~~~~lg~~ 223 (567)
T PLN02228 179 KCLNAIKDNAFQ------VSDYPVVITLEDHLPPNLQAQVAKMLTKTFRGM 223 (567)
T ss_pred HHHHHHHHhhcc------CCCCCEEEEeecCCCHHHHHHHHHHHHHHHhHh
Confidence 344555555554 478999999999999999999999998888754
No 127
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=20.08 E-value=61 Score=28.42 Aligned_cols=46 Identities=24% Similarity=0.215 Sum_probs=33.1
Q ss_pred HcCeEEecCCCCCcChHHHHHHhhcccCCCCceEEEecCCCCCccccchhhhhcC
Q 013888 352 YESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLAS 406 (434)
Q Consensus 352 ~~nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasila~ 406 (434)
.+.|+++||.+.-+-+.+.+.+=+. .+|.+... ...+-+||+++|.
T Consensus 150 ~~~i~~~GG~~~n~~~~q~~Advl~------~~V~~~~~---~e~~a~GaA~~A~ 195 (198)
T PF02782_consen 150 IRRIRVSGGGAKNPLWMQILADVLG------RPVVRPEV---EEASALGAALLAA 195 (198)
T ss_dssp ESEEEEESGGGGSHHHHHHHHHHHT------SEEEEESS---STHHHHHHHHHHH
T ss_pred ceeeEeccccccChHHHHHHHHHhC------CceEeCCC---CchHHHHHHHHHH
Confidence 5779999999988888887776664 34544433 4467789988874
No 128
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=20.05 E-value=2.8e+02 Score=27.28 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.9
Q ss_pred CeEEecCCCCCcChHHHHHHhhcc
Q 013888 354 SIILTGGSTLFPRFAERLERELRP 377 (434)
Q Consensus 354 nIiltGG~s~~~G~~~RL~~eL~~ 377 (434)
.|+||||+|++||+.+++.+.+..
T Consensus 317 gIvLtGG~S~ipgi~~~l~~~~~~ 340 (371)
T TIGR01174 317 GIVLTGGGAQLEGIVELAEKVFDN 340 (371)
T ss_pred EEEEeChHHcccCHHHHHHHHhCC
Confidence 499999999999999999999853
Done!