Query 013888
Match_columns 434
No_of_seqs 177 out of 1332
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 18:59:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013888.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013888hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qb0_A Actin-related protein 4 100.0 3.4E-83 1.2E-87 644.1 28.9 357 3-432 24-497 (498)
2 3dwl_A Actin-related protein 3 100.0 1.1E-84 3.7E-89 649.6 17.1 367 2-433 5-422 (427)
3 4fo0_A Actin-related protein 8 100.0 2.1E-77 7.2E-82 626.9 23.1 399 3-433 16-590 (593)
4 2fxu_A Alpha-actin-1, actin, a 100.0 1.6E-75 5.6E-80 578.6 28.1 361 2-433 5-375 (375)
5 1k8k_B ARP2, actin-like protei 100.0 1.9E-76 6.4E-81 588.4 15.6 357 3-430 7-388 (394)
6 1k8k_A ARP3, actin-like protei 100.0 3.3E-71 1.1E-75 556.0 26.9 372 2-432 5-412 (418)
7 4am6_A Actin-like protein ARP8 100.0 3.3E-63 1.1E-67 501.5 20.5 356 2-433 40-652 (655)
8 1jce_A ROD shape-determining p 100.0 3.5E-35 1.2E-39 286.9 17.9 320 1-412 2-331 (344)
9 2v7y_A Chaperone protein DNAK; 99.9 4.2E-22 1.4E-26 203.8 9.9 311 1-406 1-349 (509)
10 3h1q_A Ethanolamine utilizatio 99.9 6.3E-21 2.1E-25 179.6 16.1 242 4-405 30-272 (272)
11 1dkg_D Molecular chaperone DNA 99.8 7.1E-21 2.4E-25 188.2 10.9 315 1-407 1-381 (383)
12 3qfu_A 78 kDa glucose-regulate 99.8 1.5E-19 5.1E-24 179.3 12.0 314 2-407 18-392 (394)
13 3i33_A Heat shock-related 70 k 99.7 2.5E-17 8.6E-22 163.8 13.4 312 2-407 23-400 (404)
14 1yuw_A Heat shock cognate 71 k 99.6 2.8E-15 9.6E-20 154.6 17.2 310 1-406 3-378 (554)
15 2kho_A Heat shock protein 70; 99.6 2.6E-15 8.8E-20 156.3 13.3 315 1-407 1-381 (605)
16 3d2f_A Heat shock protein homo 99.5 2.5E-13 8.5E-18 142.7 14.9 312 1-406 1-381 (675)
17 4gni_A Putative heat shock pro 99.4 1.1E-13 3.7E-18 137.7 8.7 121 73-198 129-255 (409)
18 2fsj_A Hypothetical protein TA 99.4 8.8E-13 3E-17 128.0 13.7 176 4-199 23-240 (346)
19 4b9q_A Chaperone protein DNAK; 99.4 1.3E-11 4.4E-16 128.5 18.1 188 1-198 1-242 (605)
20 2ych_A Competence protein PILM 99.4 9.3E-12 3.2E-16 122.3 15.4 176 109-376 153-331 (377)
21 4apw_A ALP12; actin-like prote 99.2 3.6E-11 1.2E-15 115.8 9.3 175 4-198 9-219 (329)
22 2zgy_A Plasmid segregation pro 99.1 5.6E-10 1.9E-14 107.1 11.6 92 118-216 136-229 (320)
23 3js6_A Uncharacterized PARM pr 99.1 3E-10 1E-14 110.3 9.0 181 3-199 5-232 (355)
24 4a2a_A Cell division protein F 98.9 5.8E-09 2E-13 103.5 11.8 206 106-407 167-393 (419)
25 2d0o_A DIOL dehydratase-reacti 97.6 5E-05 1.7E-09 75.4 5.9 61 151-220 407-467 (610)
26 1nbw_A Glycerol dehydratase re 97.4 5.6E-05 1.9E-09 75.3 3.4 61 151-220 409-469 (607)
27 3mdq_A Exopolyphosphatase; str 94.4 0.08 2.7E-06 49.9 7.3 78 108-192 90-170 (315)
28 4ehu_A Activator of 2-hydroxyi 93.9 0.018 6.1E-07 53.2 1.7 64 332-405 189-252 (276)
29 1u6z_A Exopolyphosphatase; alp 92.9 0.29 9.8E-06 49.3 8.8 77 108-192 97-176 (513)
30 3hi0_A Putative exopolyphospha 92.5 0.36 1.2E-05 48.5 8.8 75 108-191 101-178 (508)
31 3vgl_A Glucokinase; ROK family 91.5 3.6 0.00012 38.4 14.1 57 114-175 90-146 (321)
32 3cet_A Conserved archaeal prot 89.4 0.24 8.3E-06 46.5 3.7 25 151-175 127-151 (334)
33 2ews_A Pantothenate kinase; PA 85.8 0.34 1.1E-05 44.8 2.3 70 331-405 215-286 (287)
34 3r8e_A Hypothetical sugar kina 80.3 5.1 0.00018 37.3 8.3 67 332-405 248-317 (321)
35 1t6c_A Exopolyphosphatase; alp 77.0 2.6 9E-05 39.4 5.0 77 108-192 98-177 (315)
36 2i7n_A Pantothenate kinase 1; 74.1 2.3 7.8E-05 40.5 3.8 73 331-405 284-358 (360)
37 3cer_A Possible exopolyphospha 72.4 3.8 0.00013 38.7 4.9 80 108-192 103-191 (343)
38 3djc_A Type III pantothenate k 71.3 35 0.0012 30.8 10.9 22 1-22 1-22 (266)
39 3zx3_A Ectonucleoside triphosp 66.8 8.6 0.00029 37.7 6.2 22 151-172 181-202 (452)
40 1hux_A Activator of (R)-2-hydr 66.4 1.4 4.7E-05 40.3 0.4 48 352-407 209-256 (270)
41 2h3g_X Biosynthetic protein; p 63.0 59 0.002 29.2 10.7 18 4-21 2-19 (268)
42 2aa4_A Mannac kinase, putative 60.3 5.2 0.00018 36.4 3.1 66 332-405 221-286 (289)
43 4htl_A Beta-glucoside kinase; 59.1 8.5 0.00029 35.3 4.4 65 332-405 225-289 (297)
44 3bex_A Type III pantothenate k 58.2 68 0.0023 28.4 10.1 19 4-22 5-23 (249)
45 4db3_A Glcnac kinase, N-acetyl 54.7 10 0.00035 35.4 4.2 67 332-405 257-324 (327)
46 3aap_A Ectonucleoside triphosp 48.4 11 0.00038 35.7 3.3 36 150-185 139-176 (353)
47 2gup_A ROK family protein; sug 47.7 4.2 0.00014 37.2 0.2 57 112-176 87-143 (292)
48 1saz_A Probable butyrate kinas 45.0 16 0.00054 34.9 3.9 65 332-407 281-348 (381)
49 3vov_A Glucokinase, hexokinase 44.7 8.8 0.0003 35.3 1.9 67 332-405 225-293 (302)
50 2qm1_A Glucokinase; alpha-beta 43.8 8.1 0.00028 35.8 1.5 67 332-405 250-319 (326)
51 2hoe_A N-acetylglucosamine kin 43.6 13 0.00044 35.5 3.0 67 332-405 302-369 (380)
52 1zbs_A Hypothetical protein PG 40.9 1.4E+02 0.0049 26.7 9.7 71 95-175 62-133 (291)
53 2ap1_A Putative regulator prot 37.1 16 0.00053 33.9 2.4 58 114-176 114-171 (327)
54 3epq_A Putative fructokinase; 36.0 17 0.00059 33.3 2.5 60 113-177 90-149 (302)
55 2yhx_A Hexokinase B; transfera 34.1 27 0.00092 34.3 3.6 51 354-407 386-442 (457)
56 3qbx_A Anhydro-N-acetylmuramic 29.4 24 0.00082 33.5 2.2 24 353-376 285-308 (371)
57 3htv_A D-allose kinase, alloki 29.1 40 0.0014 30.9 3.7 59 112-176 99-157 (310)
58 1bdg_A Hexokinase; phosphotran 28.6 41 0.0014 32.9 3.8 50 355-407 396-446 (451)
59 2e2o_A Hexokinase; acetate and 26.9 21 0.0007 32.5 1.3 56 95-161 62-117 (299)
60 1djx_A PLC-D1, phosphoinositid 22.6 66 0.0022 32.9 4.2 45 73-123 236-280 (624)
61 1zc6_A Probable N-acetylglucos 22.2 3.1E+02 0.011 24.4 8.6 89 72-175 53-146 (305)
62 3cqy_A Anhydro-N-acetylmuramic 21.1 38 0.0013 32.1 1.9 23 353-375 291-313 (370)
No 1
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-83 Score=644.09 Aligned_cols=357 Identities=24% Similarity=0.399 Sum_probs=322.2
Q ss_pred CeEEEEcCCcceEEeecCCCCCCeeeecCceeeCCC--CceecCcccccccccccccceeecccCCCcccChHHHHHHHH
Q 013888 3 NIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSS--KKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDIWA 80 (434)
Q Consensus 3 ~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~--~~~~~g~~~~~~~~~d~~~~~~~~p~~~g~i~~~d~~e~il~ 80 (434)
++||||+||+++||||+|++.|+.++||++++++.. +..++|+++. .. ....+.+++|+++|+|.|||.+|.+|+
T Consensus 24 ~~iVID~GS~~~kaG~ag~~~P~~v~PSvVg~~~~~~~~~~~vG~e~~--~~-~r~~l~l~~Pi~~GvI~dwd~~E~iw~ 100 (498)
T 3qb0_A 24 SAVVIDPGSYTTNIGYSGSDFPQSILPSVYGKYTADEGNKKIFSEQSI--GI-PRKDYELKPIIENGLVIDWDTAQEQWQ 100 (498)
T ss_dssp SCEEEECCSSEEEEEETTCSSCSEEEESEEEEESSCSSCCEECCTTGG--GS-CCTTEEEEESEETTEESCHHHHHHHHH
T ss_pred CeEEEECCCcEEEEEECCCCCeeeecCceeEEeccCCCccEEEecHHH--hc-CcCceEEeccCcCCEEccHHHHHHHHH
Confidence 689999999999999999999999999999998753 4678899743 12 134689999999999999999999999
Q ss_pred HHhhccCCCCCCCC-cEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCCCCCCcEEEEecC
Q 013888 81 HLFSSLLHISPSAS-SLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCG 159 (434)
Q Consensus 81 ~~~~~~L~~~~~~~-~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~~tglVVDiG 159 (434)
|+|.+.|+++|.++ ||||++|++++...|++++|+|||.|++|+++++.+++|++| ++| ++||||||+|
T Consensus 101 ~~f~~~L~v~p~~~~pvlltep~~n~~~~Re~~~eilFE~f~vpav~l~~~~vlaly------a~G----~~tglVVDiG 170 (498)
T 3qb0_A 101 WALQNELYLNSNSGIPALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTSTCVSF------AAG----RPNCLVVDIG 170 (498)
T ss_dssp HHHHHTSCCSCCTTCCEEEEECTTCCHHHHHHHHHHHHTTSCCSEEEEEEHHHHHHH------HHT----CSSEEEEEEC
T ss_pred HHHHhhhCCCcccCCceEEEeCCCCcHHHHHHHHHHHHhhcCCCeEeecchHHHHHH------HcC----CCeEEEEEcC
Confidence 99998899999999 999999999999999999999999999999999999999999 888 8999999999
Q ss_pred CCceEEEeccCceecccccEEecccHHHHHHHHHHHHhhcC------------------CCCCC---------hHHHHHH
Q 013888 160 FSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRA------------------INVMD---------ETFIIDD 212 (434)
Q Consensus 160 ~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~------------------~~~~~---------~~~~~~~ 212 (434)
++.|+|+||++|+++.+++.++++||++++++|.++|..+. +.... +..++++
T Consensus 171 ~g~T~vvPI~~G~~l~~ai~rl~vgG~~lt~~L~~lL~~~~i~P~~~i~~k~~~~~~~~~~~~~~~s~~~~~~~~~iv~~ 250 (498)
T 3qb0_A 171 HDTCSVSPIVDGMTLSKSTRRNFIAGKFINHLIKKALEPKEIIPLFAIKQRKPEFIKKTFDYEVDKSLYDYANNRGFFQE 250 (498)
T ss_dssp SSCEEEEEEETTEECGGGCEEESCSHHHHHHHHHHHTTTSCCCCSTTEEECSSSCEECCCSSCCCHHHHHHHHHHTHHHH
T ss_pred CCcEEEEEEeCCEEccccceeccccHHHHHHHHHHHHHhccccchhhhcccccccccccCCCccCccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998642 22211 3448999
Q ss_pred HHhhccccccc--HHHHHHHHHhcCCCCceeEeeeCCCCcccccccccChhhHhhhhccCCCCCCCCCccccccchhHHH
Q 013888 213 VKEKLCFVSLD--VARDLQIARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVM 290 (434)
Q Consensus 213 iKe~~c~v~~~--~~~~~~~~~~~~~~~~~~~~~~lpd~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (434)
|||++|||+.+ ++++..... ....+.|+||||+
T Consensus 251 iKE~~c~Va~~~~~~~~~~~~~-----~~~~~~yeLPDG~---------------------------------------- 285 (498)
T 3qb0_A 251 CKETLCHICPTKTLEETKTELS-----STAKRSIESPWNE---------------------------------------- 285 (498)
T ss_dssp HHHHTCCCCSSCHHHHHHHHHH-----TCCCEEEECSSSC----------------------------------------
T ss_pred HHHhhEEecCCccHhHHhhhcc-----CcCceEEECCCCC----------------------------------------
Confidence 99999999987 554432211 2346789999998
Q ss_pred HHHHhhhhccCCccEEEccCc-cccCCccccCCCCCCC------------------------------------------
Q 013888 291 EEARDRKRADLAKNEFDLTNE-RFLVPEMIFQPADLGM------------------------------------------ 327 (434)
Q Consensus 291 ~~~~~~~~~~~~~~~i~l~~e-r~~~~E~lF~p~~~~~------------------------------------------ 327 (434)
.|.++.| ||++||+||+|++++.
T Consensus 286 --------------~i~lg~E~Rf~~pE~LF~P~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 351 (498)
T 3qb0_A 286 --------------EIVFDNETRYGFAEELFLPKEDDIPANWPRSNSGVVKTWRNDYVPLKRTKPSGVNKSDKKVTPTEE 351 (498)
T ss_dssp --------------EEEECHHHHHHHHHTTTSCCGGGSCTTSCCCSSSCCCCCSCCCCCCCBCC----------------
T ss_pred --------------EEEECchHhhhCchhhCCHhHcCCcccccccccccccccccccccccccccccccccccccccccc
Confidence 7999999 9999999999987644
Q ss_pred --------------------------------------CCCCHHHHHHHHHHhcChhhHHHhHcCeEEecCCCCCcChHH
Q 013888 328 --------------------------------------NQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAE 369 (434)
Q Consensus 328 --------------------------------------~~~~l~~~I~~~i~~~~~d~r~~l~~nIiltGG~s~~~G~~~ 369 (434)
+..||+++|.++|.+||+|+|+.|++||||+||+|++|||.+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~e~i~~sI~~cd~d~r~~L~~nIvLsGGst~~pGf~~ 431 (498)
T 3qb0_A 352 KEQEAVSKSTSPAANSADTPNETGKRPLEEEKPPKENNELIGLADLVYSSIMSSDVDLRATLAHNVVLTGGTSSIPGLSD 431 (498)
T ss_dssp -------------------------------------CCSCCHHHHHHHHHHTSCTTTHHHHHTTEEEESGGGGSTTHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCchHHHHHHHHhCCHHHHHHHhcCEEEeCCccCchhHHH
Confidence 567999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCCCCceEEEecC---CCCCccccchhhhhcCccccccceeehhHHhhcCh-HHHHhhc
Q 013888 370 RLERELRPLVPDDYQVKITTQ---EDPLLGVWRGGSLLASSPDFQAMCVTKAEYEENGS-ARCRRRF 432 (434)
Q Consensus 370 RL~~eL~~~~~~~~~v~v~~~---~~~~~~~w~Gasila~l~~f~~~~Itr~ey~e~G~-~~~~rk~ 432 (434)
||++||+.++| .++++|.++ ++|.+++|+||||||++++|+++||||+||+|+|+ ++|+|||
T Consensus 432 Rl~~El~~l~p-~~~i~v~~~~~~~er~~s~WiGgsilasl~~f~~~witk~EY~E~G~~~iv~~kc 497 (498)
T 3qb0_A 432 RLMTELNKILP-SLKFRILTTGHTIERQYQSWLGGSILTSLGTFHQLWVGKKEYEEVGVERLLNDRF 497 (498)
T ss_dssp HHHHHHHHHST-TSCCCEECCSCTGGGGSHHHHHHHHHHTCHHHHHTSEEHHHHHTTCCHHHHHHTT
T ss_pred HHHHHHHHhCC-CCeeEEEcCCCCCccCccEEcccEEEecCcchhceEEEHHHHhhhCcHhhccccC
Confidence 99999999999 789999987 68999999999999999999999999999999999 9999998
No 2
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-84 Score=649.62 Aligned_cols=367 Identities=28% Similarity=0.475 Sum_probs=313.6
Q ss_pred CCeEEEEcCCcceEEeecCCCCCCeeeecCceeeCCC------------------------------CceecCccccccc
Q 013888 2 SNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSS------------------------------KKFIHPSPTAASA 51 (434)
Q Consensus 2 ~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~------------------------------~~~~~g~~~~~~~ 51 (434)
.++||||+||+++||||||++.|+.+|||++++++.. .++++|+++. .
T Consensus 5 ~~~iViDnGs~~~KaG~ag~~~P~~v~Ps~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~ea~--~ 82 (427)
T 3dwl_A 5 NVPIIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKRATEDLDFFIGNDAL--K 82 (427)
T ss_dssp CSCEEECCCSSBC-CEETTSSSCSCCCBCCEECC------------------------------CCSSCCEETHHHH--H
T ss_pred CCeEEEECCCCeEEEEECCCCCCCCcCCceEEeecccccccccccccccccccccccccccccCcccCCeEEchHHh--h
Confidence 4789999999999999999999999999999987632 2568899886 3
Q ss_pred ccccccceeecccCCCcccChHHHHHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeecccc
Q 013888 52 TEDLTSAAVRRPIDRGYLINSDLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPP 131 (434)
Q Consensus 52 ~~d~~~~~~~~p~~~g~i~~~d~~e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~ 131 (434)
.. ...+.+++|+++|+|.|||.+|.+|+|+|.+.|+++|.++||||+||+++++..|++++|++||.|++|+++++.++
T Consensus 83 ~~-~~~l~~~~Pi~~GvI~dwd~~e~iw~~~~~~~L~v~~~~~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~~ 161 (427)
T 3dwl_A 83 KA-SAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQA 161 (427)
T ss_dssp TH-HHHCCCCCSEETTEECCHHHHHHHHHHHHHTTSCCCGGGCEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEHH
T ss_pred Cc-ccCcEEecCcccCeeccHHHHHHHHHHHHhHhhCCCCcCCcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecchH
Confidence 32 23578999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCC----CCCCcEEEEecCCCceEEEeccCceecccccEEecccHHHHHHHHHHHHhhcCCCCCChH
Q 013888 132 SLVHLYEASRRPYGLL----SETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDET 207 (434)
Q Consensus 132 ~ls~~~~~~~~~~g~~----~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~ 207 (434)
+||+| ++|.. .+.+||||||+|++.|+|+||++|+++.++++++++||+++|++|.++|..+++. ..+.
T Consensus 162 vla~~------a~G~~~~~~~~~~tglVVDiG~g~T~v~PV~~G~~l~~~~~rl~~gG~~lt~~L~~lL~~~~~~-~~~~ 234 (427)
T 3dwl_A 162 VLALA------ASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEP-DSSL 234 (427)
T ss_dssp HHHHH------GGGGSTTTCSCCCCEEEEEESSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHTTC---------C
T ss_pred HHHHH------hcCCcccccCCCceEEEEECCCCceEEEEEECCEEehhhheeccccHHHHHHHHHHHHHHcCCC-chhH
Confidence 99999 66521 1258999999999999999999999999999999999999999999999988765 4456
Q ss_pred HHHHHHHhhcccccccHHHHHHHHHhcCCCCceeEeeeC--CCCcccccccccChhhHhhhhccCCCCCCCCCccccccc
Q 013888 208 FIIDDVKEKLCFVSLDVARDLQIARKRGKDNLLRCTYVL--PDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMD 285 (434)
Q Consensus 208 ~~~~~iKe~~c~v~~~~~~~~~~~~~~~~~~~~~~~~~l--pd~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (434)
+++++|||++|||+.|+.++++.+... ....+.|.| |||.
T Consensus 235 ~~~~~IKe~~cyv~~d~~~e~~~~~~~---~~~~~~~~l~~~~g~----------------------------------- 276 (427)
T 3dwl_A 235 KTAERIKEECCYVCPDIVKEFSRFDRE---PDRYLKYASESITGH----------------------------------- 276 (427)
T ss_dssp HHHHHHHHHHCCCCSCHHHHHHHTTC--------CCBCC-----------------------------------------
T ss_pred HHHHHHHHhcCcccCCHHHHHHHhhcC---ccccceeEeeCCCCC-----------------------------------
Confidence 889999999999999998887653211 111234555 5543
Q ss_pred hhHHHHHHHhhhhccCCccEEEccCccccCCccccCCCCCCCC-CCCHHHHHHHHHHhcChhhHHHhHcCeEEecCCCCC
Q 013888 286 RTEVMEEARDRKRADLAKNEFDLTNERFLVPEMIFQPADLGMN-QAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLF 364 (434)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~i~l~~er~~~~E~lF~p~~~~~~-~~~l~~~I~~~i~~~~~d~r~~l~~nIiltGG~s~~ 364 (434)
.+.+.++.|||++||+||+|++++.+ ..+|+++|.++|.+||+|+|+.|++|||||||+|++
T Consensus 277 -----------------~~~i~ig~erf~~pE~LF~P~~~g~~~~~gI~~~i~~sI~~c~~dlr~~L~~nIvLtGG~sl~ 339 (427)
T 3dwl_A 277 -----------------STTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLF 339 (427)
T ss_dssp --------------------CBCCTHHHHSGGGGTCGGGTCSSCCSCHHHHHHHHHHTSCHHHHHHHHHCEEEESGGGCS
T ss_pred -----------------eeEEEEChHhhhChhhccCchhcCCccCCCccHHHHHHHHhCCHHHHHHHhCCEEEEccCcCC
Confidence 12688999999999999999999988 489999999999999999999999999999999999
Q ss_pred cChHHHHHHhhcccC--------------CCCceEEEecCCCCCccccchhhhhcCccccccceeehhHHhhcChHHHHh
Q 013888 365 PRFAERLERELRPLV--------------PDDYQVKITTQEDPLLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRR 430 (434)
Q Consensus 365 ~G~~~RL~~eL~~~~--------------~~~~~v~v~~~~~~~~~~w~Gasila~l~~f~~~~Itr~ey~e~G~~~~~r 430 (434)
|||.+||++||+.+. |..++++|.++++|.+++|+||||||++++|+++||||+||+|+|+++++|
T Consensus 340 ~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~~~~r~~s~WiGGSilasl~~f~~~witk~EYeE~G~~iv~~ 419 (427)
T 3dwl_A 340 KNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419 (427)
T ss_dssp TTTTHHHHHHHHHHHTTC-------------CCCCCEECCTTCTTHHHHHHHHHHHSTTHHHHSEEHHHHHHSCGGGGSC
T ss_pred CChHHHHHHHHHHhhhhhccccccccccCCCceeEEEecCCccccceecCceeeccccchhheeEEHHHHhhhChHhhee
Confidence 999999999999886 456789999999999999999999999999999999999999999999999
Q ss_pred hcC
Q 013888 431 RFF 433 (434)
Q Consensus 431 k~~ 433 (434)
|++
T Consensus 420 ~~~ 422 (427)
T 3dwl_A 420 YQI 422 (427)
T ss_dssp CCC
T ss_pred ccc
Confidence 853
No 3
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.1e-77 Score=626.89 Aligned_cols=399 Identities=19% Similarity=0.296 Sum_probs=296.3
Q ss_pred CeEEEEcCCcceEEeecCCCCCCeeeecCceeeCC---------------------------------------------
Q 013888 3 NIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLS--------------------------------------------- 37 (434)
Q Consensus 3 ~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~--------------------------------------------- 37 (434)
++||||+||+++|||||||+.|+ +||++|+++..
T Consensus 16 ~iIVIdpGS~~~riG~A~d~~P~-~iP~~iar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (593)
T 4fo0_A 16 FIIVIHPGSTTLRIGRATDTLPA-SIPHVIARRHKQQGQPLYKDSWLLREGLNKPESNEQRQNGLKMVDQAIWSKKMSNG 94 (593)
T ss_dssp GEEEEECCSSEEEEEETTCSSCE-EEECCEEEECSSTTCCCCBCCSSCCTTTTSTTHHHHHHHHHHHHHHHHHHSCCTTS
T ss_pred CEEEEeCCCCCeEeeecCCCCCC-eeeEEEEEECCCCCCCcccccccccccccccchhhhhhhhHHHHHHHHHHHhhhcc
Confidence 58999999999999999999996 56999997532
Q ss_pred ------------------------------------CCceecCcccccccccccccceeecccCCC-----------ccc
Q 013888 38 ------------------------------------SKKFIHPSPTAASATEDLTSAAVRRPIDRG-----------YLI 70 (434)
Q Consensus 38 ------------------------------------~~~~~~g~~~~~~~~~d~~~~~~~~p~~~g-----------~i~ 70 (434)
.+++++|++++ .+.+...+.++|||.+| .+.
T Consensus 95 ~r~~~~s~~~~~~~n~~~~p~~i~~~~~~~~~~~~~~~~~~vG~~al--~~~~~~~~~l~~Pi~~G~~n~~~~~~~s~~~ 172 (593)
T 4fo0_A 95 TRRIPVSPEQARSYNKQMRPAILDHCSGNKWTNTSHHPEYLVGEEAL--YVNPLDCYNIHWPIRRGQLNIHPGPGGSLTA 172 (593)
T ss_dssp CCCCCCCHHHHHHHHTTCCCEEEESSCSCCCCCCTTCCSEEETHHHH--TSCTTSSEEEECSEETTEECCCSSTTCSHHH
T ss_pred cccCCCcHHHhhhhhccCCCcccCCCCccccccccccccccccHHHh--hcCCcccceEecCcccCccccccCCccchhc
Confidence 12467899887 55555679999999999 578
Q ss_pred ChHHHHHHHHHHhhccCCCCCCC---CcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCC
Q 013888 71 NSDLQRDIWAHLFSSLLHISPSA---SSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLL 147 (434)
Q Consensus 71 ~~d~~e~il~~~~~~~L~~~~~~---~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~ 147 (434)
+||++|.||+|+|.+.|+++|++ ||||||||+++++..|++++|+|||+|+||+++++++++||+| ++|
T Consensus 173 ~wdd~e~iw~~~~~~~L~i~~~d~~~~pvlltep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~y------a~G-- 244 (593)
T 4fo0_A 173 VLADIEVIWSHAIQKYLEIPLKDLKYYRCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATY------GSG-- 244 (593)
T ss_dssp HHHHHHHHHHHHHHHTSCCCGGGGGGCEEEEEECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHH------HHT--
T ss_pred CHHHHHHHHHHHHHHhcCCCchhccCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHH------HCC--
Confidence 99999999999999999998876 9999999999999999999999999999999999999999999 888
Q ss_pred CCCCcEEEEecCCCceEEEeccCceecccccEEecccHHHHHHHHHHHHhhcCCCCCC-------hHHHHHHHHhhcccc
Q 013888 148 SETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMD-------ETFIIDDVKEKLCFV 220 (434)
Q Consensus 148 ~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~-------~~~~~~~iKe~~c~v 220 (434)
++||||||+|++.|+|+||+||+++.+++.++++||+++|++|.++|..++++... +..++++|||++||+
T Consensus 245 --~~tglVVDiG~~~T~v~PV~dG~~l~~~~~rl~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~d~~~v~~iKe~~c~v 322 (593)
T 4fo0_A 245 --LSSTCIVDVGDQKTSVCCVEDGVSHRNTRLCLAYGGSDVSRCFYWLMQRAGFPYRECQLTNKMDCLLLQHLKETFCHL 322 (593)
T ss_dssp --CSEEEEEEECSSCEEEEEEESSCBCGGGCEEESCCHHHHHHHHHHHHHHTTCSCTTCCTTCHHHHHHHHHHHHHHCBC
T ss_pred --CCceEEEEeCCCceeeeeeECCEEehhheEEecccHHHHHHHHHHHHHhcCCCccccccccchhHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999998875432 567899999999999
Q ss_pred cccHHHHHHHHHhcCCCCceeEeeeCCCCccccc---------------------ccccC------------hhhHhhhh
Q 013888 221 SLDVARDLQIARKRGKDNLLRCTYVLPDGVTHTK---------------------GFVKD------------PDAAQRYL 267 (434)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~lpd~~~~~~---------------------~~i~~------------~~~~~~~~ 267 (434)
+.++..+ ......+.+|++.+... +.... +.......
T Consensus 323 ~~d~~~~----------~~~~~~~~~p~~~~~~~~~~~~~E~~~~p~~lf~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (593)
T 4fo0_A 323 DQDISGL----------QDHEFQIRHPDSPALLYQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQGDPEDPHDEH 392 (593)
T ss_dssp CTTCCSC----------EEEEEEECCTTSCEEEEEEEECTHHHHHHHTTTSGGGGCCCSSCCEEECC-------------
T ss_pred ccchHHh----------hhhhhhcccCCCCceeeEEeccchhhcCchhhcChhhhcccccccchhhhhcccCcccchhhh
Confidence 9875322 11223344554432110 00000 00000000
Q ss_pred ccCCCCCCCCCccccccchhHHHHHHHhhhhccCCccEEEccCccccCCccccCCCCC----------------------
Q 013888 268 SLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLVPEMIFQPADL---------------------- 325 (434)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~er~~~~E~lF~p~~~---------------------- 325 (434)
.+..... ..... .............++..+.++.+|+.+||.||+|...
T Consensus 393 ~~~~~~~--~~~~~-------~~~~~~~~~~~~p~g~~~~~~~e~~~~pe~lf~p~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (593)
T 4fo0_A 393 YLLATQS--KQEQS-------AKATADRKSASKPIGFEGDLRGQSSDLPERLHSQEVDLGSAQGDGLMAGNDSEEALTAL 463 (593)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhccc--chhhh-------hhcccccccccCCCCcccccccccccCchhccCcccccccccccccccccccccccccc
Confidence 0000000 00000 0000000011122345788899999999999998632
Q ss_pred ----------CCCCCCHHHHHHHHHHhcC-hhhHHHhHcCeEEecCCCCCcChHHHHHHhhcccCCCCc-----eEEEec
Q 013888 326 ----------GMNQAGLAECIVRAVNSCH-PYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDY-----QVKITT 389 (434)
Q Consensus 326 ----------~~~~~~l~~~I~~~i~~~~-~d~r~~l~~nIiltGG~s~~~G~~~RL~~eL~~~~~~~~-----~v~v~~ 389 (434)
+.+..||+++|.++|.+|+ .|+|+.|++||+||||+|++|||.+||++||..++|..+ +++|++
T Consensus 464 ~~~~~~~~~~~~~~~gL~~aI~~SI~~~~~~D~r~~L~~NIvltGG~s~~pGf~~RL~~eL~~~~p~~~~~~~~~v~v~~ 543 (593)
T 4fo0_A 464 MSRKTAISLFEGKALGLDKAILHSIDCCSSDDTKKKMYSSILVVGGGLMFHKAQEFLQHRILNKMPPSFRRIIENVDVIT 543 (593)
T ss_dssp -------CHHHHSCCCHHHHHHHHHHTCSSHHHHHHHHHEEEEESSTTCCBTHHHHHHHHHHHHSCHHHHHHSSCCEEES
T ss_pred cccccccccccccCCCHHHHHHHHHHhCCcHHHHHHHhCCEEEEchhhchhcHHHHHHHHHHHhCcchhccccceEEEEC
Confidence 1235699999999999999 599999999999999999999999999999999998643 589998
Q ss_pred CC---CCCccccchhhhhcCccccccceeehhHHhhcChHHHHhhcC
Q 013888 390 QE---DPLLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 433 (434)
Q Consensus 390 ~~---~~~~~~w~Gasila~l~~f~~~~Itr~ey~e~G~~~~~rk~~ 433 (434)
++ +|.+++|+||||||+|++|+++||||+||+|+|+++|+|||.
T Consensus 544 ~p~~~d~~~~aW~GgSilasL~~f~~~wItk~EYeE~G~~il~~kc~ 590 (593)
T 4fo0_A 544 RPKDMDPRLIAWKGGAVLACLDTTQELWIYQREWQRFGVRMLRERAA 590 (593)
T ss_dssp SGGGCCTTTHHHHHHHHHHHCGGGGGTCEEHHHHHHHTTHHHHHHCS
T ss_pred CCCCCCCceeeehhhHHHhcCccHHHeeECHHHHHhhCcHHHhhcCC
Confidence 86 799999999999999999999999999999999999999995
No 4
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...
Probab=100.00 E-value=1.6e-75 Score=578.62 Aligned_cols=361 Identities=33% Similarity=0.621 Sum_probs=328.4
Q ss_pred CCeEEEEcCCcceEEeecCCCCCCeeeecCceeeCCC--------CceecCcccccccccccccceeecccCCCcccChH
Q 013888 2 SNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSS--------KKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSD 73 (434)
Q Consensus 2 ~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~--------~~~~~g~~~~~~~~~d~~~~~~~~p~~~g~i~~~d 73 (434)
.++||||+||+++|+||+|++.|+.++||++++++.. +.+++|+++. ... ..+.+++|+++|.|.|||
T Consensus 5 ~~~ivID~Gs~~~k~G~~~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~vG~~a~--~~~--~~~~~~~Pi~~G~i~d~d 80 (375)
T 2fxu_A 5 TTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ--SKR--GILTLKYPIEHGIITNWD 80 (375)
T ss_dssp CCCEEEEECSSEEEEEETTCSSCSEEEECCEEEECTTTC-------CCEEHHHHH--HHT--TSEEEECSEETTEECCHH
T ss_pred CceEEEECCCCeEEEEECCCCCCceeeccccccccccccccCCCCCCeEechhHh--hcC--cccceeccccCCcccCHH
Confidence 4789999999999999999999999999999987653 3567899886 333 357899999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCCCCCCcE
Q 013888 74 LQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCS 153 (434)
Q Consensus 74 ~~e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~~tg 153 (434)
.+|.+|+|+|.+.|+++|.++++++++|++++...|+++++++||.++++++++++++++|+| ++| ..+|
T Consensus 81 ~~e~i~~~~~~~~L~~~~~~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~~~~e~~aaa~------a~g----~~~~ 150 (375)
T 2fxu_A 81 DMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLY------ASG----RTTG 150 (375)
T ss_dssp HHHHHHHHHHHTTSCCCGGGSCEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHH------HTT----CSSE
T ss_pred HHHHHHHHHHHHhcCCCCcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCcceEEEccchheeee------ecC----CCeE
Confidence 999999999988899999999999999999999999999999999999999999999999999 888 8999
Q ss_pred EEEecCCCceEEEeccCceecccccEEecccHHHHHHHHHHHHhhcCCCCC--ChHHHHHHHHhhcccccccHHHHHHHH
Q 013888 154 LVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVM--DETFIIDDVKEKLCFVSLDVARDLQIA 231 (434)
Q Consensus 154 lVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~--~~~~~~~~iKe~~c~v~~~~~~~~~~~ 231 (434)
+|||+|++.|+|+||++|+++.+++.++++||+++|++|.++|..+++++. .+...+++||+++||++.++.++++..
T Consensus 151 lVvDiG~gtt~v~~v~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~~~~~~~~~e~iK~~~~~v~~~~~~e~~~~ 230 (375)
T 2fxu_A 151 IVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATA 230 (375)
T ss_dssp EEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHCCCCSSHHHHHHHH
T ss_pred EEEEcCCCceEEeEeECCEEeccceEEeccCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhcccHHHHHHhh
Confidence 999999999999999999999999999999999999999999998877664 256789999999999999988776654
Q ss_pred HhcCCCCceeEeeeCCCCcccccccccChhhHhhhhccCCCCCCCCCccccccchhHHHHHHHhhhhccCCccEEEccCc
Q 013888 232 RKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNE 311 (434)
Q Consensus 232 ~~~~~~~~~~~~~~lpd~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~e 311 (434)
.. .......|.|||+. .+.++.|
T Consensus 231 ~~---~~~~~~~~~lpdg~------------------------------------------------------~i~i~~e 253 (375)
T 2fxu_A 231 AS---SSSLEKSYELPDGQ------------------------------------------------------VITIGNE 253 (375)
T ss_dssp HH---CSTTCEEEECTTSC------------------------------------------------------EEEESTH
T ss_pred cc---cCccCeEEECCCCC------------------------------------------------------EEEEChh
Confidence 32 12235678999887 6899999
Q ss_pred cccCCccccCCCCCCCCCCCHHHHHHHHHHhcChhhHHHhHcCeEEecCCCCCcChHHHHHHhhcccCCCCceEEEecCC
Q 013888 312 RFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQE 391 (434)
Q Consensus 312 r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~ 391 (434)
||.+||.||+|.+++.+..+|.++|.++|.+||+|+|+.+++||+||||+|++|||.+||++||..+.|...+++|..++
T Consensus 254 rf~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~IvLtGG~s~~pG~~~rl~~el~~~~p~~~~v~v~~~~ 333 (375)
T 2fxu_A 254 RFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP 333 (375)
T ss_dssp HHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEECCT
T ss_pred heechHhhCCCccCCCCCCCHHHHHHHHHHhCCHHHHHHHHhCcEeeCCCCCCccHHHHHHHHHHHhCCCCeeEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred CCCccccchhhhhcCccccccceeehhHHhhcChHHHHhhcC
Q 013888 392 DPLLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 433 (434)
Q Consensus 392 ~~~~~~w~Gasila~l~~f~~~~Itr~ey~e~G~~~~~rk~~ 433 (434)
+|.+++|+||+++|++++|+++||||+||+|+|+++++|||+
T Consensus 334 ~p~~~~w~G~si~a~l~~f~~~~itk~ey~e~G~~~~~~k~~ 375 (375)
T 2fxu_A 334 ERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 375 (375)
T ss_dssp TTTSHHHHHHHHHHHCGGGGGGSEEHHHHHHHCGGGGC----
T ss_pred CCCccEEcchHHhhCcccHhhceeeHHHHhhhChHHHhhhcc
Confidence 999999999999999999999999999999999999999996
No 5
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*
Probab=100.00 E-value=1.9e-76 Score=588.40 Aligned_cols=357 Identities=29% Similarity=0.528 Sum_probs=159.8
Q ss_pred CeEEEEcCCcceEEeecCCCCCCeeeecCceeeCCC----------CceecCcccccccccccccceeecccCCCcccCh
Q 013888 3 NIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSS----------KKFIHPSPTAASATEDLTSAAVRRPIDRGYLINS 72 (434)
Q Consensus 3 ~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~----------~~~~~g~~~~~~~~~d~~~~~~~~p~~~g~i~~~ 72 (434)
++||||+||+++|+||+|++.|+.++||++++++.. +.+++|+++. ... ..+.+++|+++|.|.||
T Consensus 7 ~~ivID~Gs~~~k~G~ag~~~P~~~~Ps~v~~~~~~~~~~~~~~~~~~~~vG~ea~--~~~--~~~~~~~Pi~~G~i~dw 82 (394)
T 1k8k_B 7 KVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEAS--ELR--SMLEVNYPMENGIVRNW 82 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEECCCCeEEEeeCCCCCcceeccceeEEEcccccccccCCCCCCeEEChHHH--hcC--CCceeeccccCCEEecH
Confidence 689999999999999999999999999999987643 3567899987 333 35788999999999999
Q ss_pred HHHHHHHHHHh-hccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCCCCCC
Q 013888 73 DLQRDIWAHLF-SSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQ 151 (434)
Q Consensus 73 d~~e~il~~~~-~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~~ 151 (434)
|.++.+|+|+| .+.|+++|.++++++++|++++...|++++|++||.|++++++++++++||+| ++| ..
T Consensus 83 d~~e~i~~~~~~~~~L~~~~~~~~vllt~p~~~~~~~r~~~~e~~fe~~~~~~~~~~~~~~~a~~------a~g----~~ 152 (394)
T 1k8k_B 83 DDMKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLY------AQG----LL 152 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcccccCcCCCCCcEEEEECCCCCHHHHHHHHHHhhhccCCCeEEEEhhHHHHHH------hCC----Cc
Confidence 99999999999 77899999999999999999999999999999999999999999999999999 888 89
Q ss_pred cEEEEecCCCceEEEeccCceecccccEEecccHHHHHHHHHHHHhhcCCCCC--ChHHHHHHHHhhcccccccHHHHHH
Q 013888 152 CSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVM--DETFIIDDVKEKLCFVSLDVARDLQ 229 (434)
Q Consensus 152 tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~--~~~~~~~~iKe~~c~v~~~~~~~~~ 229 (434)
+|+|||+|++.|+|+||++|+++.+++.++++||+++|++|.++|..+++++. .+...+++||+++||++.++..+++
T Consensus 153 ~~lVVDiG~g~T~v~pv~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~~~~~~~~ae~iK~~~~~v~~d~~~~~~ 232 (394)
T 1k8k_B 153 TGVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQK 232 (394)
T ss_dssp -CCEEEECSSCEEEECEETTEECSTTCEEESCCHHHHHHHHHHHHHHTTCCCCTTTTHHHHHHHHHHHCCCCSSHHHHHH
T ss_pred eEEEEEcCCCceEeeeeECCEEcccceEEeeccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhheeEecCHHHHHH
Confidence 99999999999999999999999999999999999999999999998877664 4678899999999999999887765
Q ss_pred HHHhcCCCCceeEeeeCCCCcccccccccChhhHhhhhccCCCCCCCCCccccccchhHHHHHHHhhhhccCCccEEEcc
Q 013888 230 IARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLT 309 (434)
Q Consensus 230 ~~~~~~~~~~~~~~~~lpd~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~ 309 (434)
.... .......|.|||+. .+.++
T Consensus 233 ~~~~---~~~~~~~~~lpdg~------------------------------------------------------~i~i~ 255 (394)
T 1k8k_B 233 LALE---TTVLVESYTLPDGR------------------------------------------------------IIKVG 255 (394)
T ss_dssp HHHH---CSTTCEEEECTTSC------------------------------------------------------EEEEC
T ss_pred hhcc---CCcCceEEECCCCC------------------------------------------------------EEEEC
Confidence 5432 22235679999987 68899
Q ss_pred CccccCCccccCCCCCCCCCCCHHHHHHHHHHhcChhhHHHhHcCeEEecCCCCCcChHHHHHHhhcccC----------
Q 013888 310 NERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLV---------- 379 (434)
Q Consensus 310 ~er~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIiltGG~s~~~G~~~RL~~eL~~~~---------- 379 (434)
.|||++||+||+|++++.+..+|+++|.++|.+||+|+|+.|++||+||||+|++|||.+||++||..+.
T Consensus 256 ~erf~~~E~Lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvLtGG~s~~~G~~~rl~~el~~~~~~~~~~~~~~ 335 (394)
T 1k8k_B 256 GERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVE 335 (394)
T ss_dssp THHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESGGGCSTTHHHHHHHHHHHHHHHHTCSSCCC
T ss_pred chhhcChHhhCCchhccCCCCCHHHHHHHHHHhCCHHHHHHHHhCEEEeCcccccccHHHHHHHHHHHHHhhhhcccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred -CCCceEEEecCCCCCccccchhhhhcCccccc-cceeehhHHhhcChHHHHh
Q 013888 380 -PDDYQVKITTQEDPLLGVWRGGSLLASSPDFQ-AMCVTKAEYEENGSARCRR 430 (434)
Q Consensus 380 -~~~~~v~v~~~~~~~~~~w~Gasila~l~~f~-~~~Itr~ey~e~G~~~~~r 430 (434)
|..++++|..+++|.+++|+|||++|++++|+ ++||||+||+|+|+++++|
T Consensus 336 ~p~~~~v~v~~~~~~~~~~w~Ggsilasl~~f~~~~~itk~eY~e~G~~~~~~ 388 (394)
T 1k8k_B 336 KLSKFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVLEK 388 (394)
T ss_dssp TTCCCCC----------------------------------------------
T ss_pred CCCceEEEEecCCCcceeEEhhhHHhhCCcCCccceeecHHHHhhhCHHHHHh
Confidence 77778999988999999999999999999999 9999999999999999987
No 6
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Probab=100.00 E-value=3.3e-71 Score=556.04 Aligned_cols=372 Identities=28% Similarity=0.485 Sum_probs=324.3
Q ss_pred CCeEEEEcCCcceEEeecCCCCCCeeeecCceeeCCC----------------CceecCcccccccccccccceeecccC
Q 013888 2 SNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSS----------------KKFIHPSPTAASATEDLTSAAVRRPID 65 (434)
Q Consensus 2 ~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~----------------~~~~~g~~~~~~~~~d~~~~~~~~p~~ 65 (434)
.++||||+||+++|+||+|++.|+.++||++++++.. .++++|+++. ... .+.+++|++
T Consensus 5 ~~~ivID~Gs~~~k~G~~~~~~p~~~~Ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~a~--~~~---~~~~~~pi~ 79 (418)
T 1k8k_A 5 LPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAI--EKP---TYATKWPIR 79 (418)
T ss_dssp SCCEEEEECSSEEEEEETTCSSCSEEEESCEEECC-----------CCCTTGGGCEEEGGGGT--SCT---TSEEECCEE
T ss_pred CCeEEEECCCCeEEEeeCCCCCCCCcCCceEEEECcccccccccccccccccccCeEEChHHH--hcC---CCEEecccc
Confidence 4789999999999999999999999999999987643 2378999987 342 488999999
Q ss_pred CCcccChHHHHHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCC
Q 013888 66 RGYLINSDLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYG 145 (434)
Q Consensus 66 ~g~i~~~d~~e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g 145 (434)
+|.|.|||.++.+|+|+|.+.|+++|+++++++++|++++...|+++.+++||.+++++++++++|++|+|.... ..|
T Consensus 80 ~G~i~d~d~~e~i~~~~~~~~L~~~~~~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~--~~~ 157 (418)
T 1k8k_A 80 HGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWT--SRQ 157 (418)
T ss_dssp TTEESCHHHHHHHHHHHHHTTTCCCGGGCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGG--STT
T ss_pred CCEECCHHHHHHHHHHHHHhccCCCCCCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEEechHHHHhhhhhc--ccc
Confidence 999999999999999999888999999999999999999999999999999999999999999999999993100 001
Q ss_pred CC-CCCCcEEEEecCCCceEEEeccCceecccccEEecccHHHHHHHHHHHHhhcCCCCC--ChHHHHHHHHhhcccccc
Q 013888 146 LL-SETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVM--DETFIIDDVKEKLCFVSL 222 (434)
Q Consensus 146 ~~-~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~--~~~~~~~~iKe~~c~v~~ 222 (434)
+. .+. +|+|||+|++.|+|+||++|+++.+++.++++||++++++|.++|..++.++. .+...++++|+++||++.
T Consensus 158 ~~~~~~-~glVvDiG~gtt~v~~v~~G~~~~~~~~~~~lGG~~lt~~l~~~l~~~~~~~~~~~~~~~~e~iK~~~~~v~~ 236 (418)
T 1k8k_A 158 VGERTL-TGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCP 236 (418)
T ss_dssp CCSCCC-CEEEEEESSSCEEEEEEETTEECGGGCEEESCSHHHHHHHHHHHHHTTCCCCCGGGHHHHHHHHHHHHCCCCS
T ss_pred cCCCCC-eEEEEEcCCCceEEEEeECCEEcccceEEEeCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhchhcc
Confidence 11 115 99999999999999999999999999999999999999999999998876553 356789999999999999
Q ss_pred cHHHHHHHHHhcCCCCceeEeeeCCCCcccccccccChhhHhhhhccCCCCCCCCCccccccchhHHHHHHHhhhhccCC
Q 013888 223 DVARDLQIARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLA 302 (434)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~lpd~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (434)
++.++++..... .......|.+||+.+. .
T Consensus 237 ~~~~e~~~~~~~--~~~~~~~~~lpd~~~~-------------------------------------------------~ 265 (418)
T 1k8k_A 237 DLVKEFNKYDTD--GSKWIKQYTGINAISK-------------------------------------------------K 265 (418)
T ss_dssp CHHHHHHHHHHS--GGGTCEEEEEECTTTC-------------------------------------------------C
T ss_pred cHHHHHHhhccc--ccccceeEECCCCCCC-------------------------------------------------c
Confidence 988777654321 1122467899987621 1
Q ss_pred ccEEEccCccccCCccccCCCCCCCCC-CCHHHHHHHHHHhcChhhHHHhHcCeEEecCCCCCcChHHHHHHhhcccC--
Q 013888 303 KNEFDLTNERFLVPEMIFQPADLGMNQ-AGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLV-- 379 (434)
Q Consensus 303 ~~~i~l~~er~~~~E~lF~p~~~~~~~-~~l~~~I~~~i~~~~~d~r~~l~~nIiltGG~s~~~G~~~RL~~eL~~~~-- 379 (434)
...+.++.|||++||+||+|++++.+. .+|.++|.++|.+||.|+|+.+++||+||||+|++|||.+||++||..+.
T Consensus 266 ~~~i~l~~erf~~~E~lF~P~~~~~~~~~~i~~~i~~si~~~~~~~~~~l~~~IvL~GG~s~~pg~~~rl~~el~~~~~~ 345 (418)
T 1k8k_A 266 EFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDA 345 (418)
T ss_dssp EEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHHHCEEEESGGGCSTTHHHHHHHHHHHHHHH
T ss_pred ccEEEeChHHhhCcHhhCCCccCCCCCCCCHHHHHHHHHHcCCHHHHHHHHhceEEeCCccccccHHHHHHHHHHHhhcc
Confidence 226889999999999999999888775 79999999999999999999999999999999999999999999998875
Q ss_pred --------------CCCceEEEecCCCCCccccchhhhhcCccccccceeehhHHhhcChHHHHhhc
Q 013888 380 --------------PDDYQVKITTQEDPLLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRF 432 (434)
Q Consensus 380 --------------~~~~~v~v~~~~~~~~~~w~Gasila~l~~f~~~~Itr~ey~e~G~~~~~rk~ 432 (434)
|...+++|..+++|.+++|+||||+|++++|+++||||+||+|+|+++++|||
T Consensus 346 ~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilasl~~f~~~~itk~ey~e~G~~~~~~~~ 412 (418)
T 1k8k_A 346 RLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNP 412 (418)
T ss_dssp HHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTTSHHHHHHSEEHHHHHHHCGGGGGCCC
T ss_pred ccccccccccccCCCCceeEEEeCCCccccceeHhHHHHHcCccHhheEEEHHHHhhhCHHHHhhhc
Confidence 56678899999999999999999999999999999999999999999999975
No 7
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*
Probab=100.00 E-value=3.3e-63 Score=501.51 Aligned_cols=356 Identities=21% Similarity=0.332 Sum_probs=294.2
Q ss_pred CCeEEEEcCCcceEEeecCCCCCCeeeecCceeeCC--------------------------------------------
Q 013888 2 SNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLS-------------------------------------------- 37 (434)
Q Consensus 2 ~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~-------------------------------------------- 37 (434)
+++|||.+||.++|+|+|.|..|. .+|++++++..
T Consensus 40 ~~~IVIHpGS~~lRIG~AsD~~P~-~ip~~iA~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~k~rmr~~k~r 118 (655)
T 4am6_A 40 TATIVIHPGSNSIKIGFPKDDHPV-VVPNCVAVPKKWLDLENSEHVENVCLQREQSEEFNNIKSEMEKNFRERMRYYKRK 118 (655)
T ss_dssp GGEEEEECCSSEEEEECTTSSSCE-EEESCEEEEGGGSCCSSSCCCCTTCCCSCCCHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCeEEEcCCCcceeeeecCCCCCc-ccceeEEeccccccCCCccccCccccchhhhHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 478999999999999999999995 77999985321
Q ss_pred -----------------------------------CCceecCcccccccccccccceeecccCCCccc----C-------
Q 013888 38 -----------------------------------SKKFIHPSPTAASATEDLTSAAVRRPIDRGYLI----N------- 71 (434)
Q Consensus 38 -----------------------------------~~~~~~g~~~~~~~~~d~~~~~~~~p~~~g~i~----~------- 71 (434)
.++++||+++. ... ...+.+++|+++|+|. |
T Consensus 119 ~~pn~~e~~~~fN~~~~Pe~i~~~nDp~~~~W~~~~~d~~VGdEA~--~~~-r~~l~l~~PI~~GvI~~~s~Dy~s~q~~ 195 (655)
T 4am6_A 119 VPGNAHEQVVSFNENSKPEIISEKNDPSPIEWIFDDSKLYYGSDAL--RCV-DEKFVIRKPFRGGSFNVKSPYYKSLAEL 195 (655)
T ss_dssp CSTTCCSSTTCCEEEECSCCCCSSSSCCSCCCBCCTTSCEEHHHHH--TBC-TTTEEEECSEETTEECTTCSSCSSHHHH
T ss_pred CCCCCHHHHHHhcCCCCCeECCCCCCccccccccCCCCEEEehHHh--hCC-ccCeEEeccccCCEecccCCcccccccc
Confidence 01355677765 221 2468999999999998 8
Q ss_pred hHHHHHHHHHHhhc-cCCCCCC---CCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCC
Q 013888 72 SDLQRDIWAHLFSS-LLHISPS---ASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLL 147 (434)
Q Consensus 72 ~d~~e~il~~~~~~-~L~~~~~---~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~ 147 (434)
||.+|.+|+|+|.+ .|+++|+ ++||||+||++++...|++++|+|||.|+||+++++.+++||+| ++|.
T Consensus 196 WD~mE~Iw~y~f~~~~L~V~p~~~~e~pVLLTEPplnp~~~REkm~EIlFE~fgvpavyl~~qavlAly------asGl- 268 (655)
T 4am6_A 196 ISDVTKLLEHALNSETLNVKPTKFNQYKVVLVIPDIFKKSHVETFIRVLLTELQFQAVAIIQESLATCY------GAGI- 268 (655)
T ss_dssp HHHHHHHHHHHHBSSSCBCCGGGGGGCEEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHH------HSCC-
T ss_pred HHHHHHHHHHHhccccccccccccCCCcEEEEeCCCCCHHHHHHHHHHHHhhcCCCeeeeccHHHHHHH------hCCC-
Confidence 99999999999984 8999986 89999999999999999999999999999999999999999999 7771
Q ss_pred CCCCcEEEEecCCCceEEEeccCceecccccEEecccHHHHHHHHHHHHhhcCC-----CC--CChHHHHHHHHhhcccc
Q 013888 148 SETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAI-----NV--MDETFIIDDVKEKLCFV 220 (434)
Q Consensus 148 ~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~-----~~--~~~~~~~~~iKe~~c~v 220 (434)
.++|||||+|++.|+|+||++|+++.+++.++++||++++++|.++|..+++ ++ ..+.+++++|||++|||
T Consensus 269 --~ttGLVVDiG~g~T~VvPV~eG~vl~~ai~rL~iGG~dLT~yL~kLL~~rgypy~~~~f~t~~e~eiVrdIKEk~CyV 346 (655)
T 4am6_A 269 --STSTCVVNIGAAETRIACVDEGTVLEHSAITLDYGGDDITRLFALFLLQSDFPLQDWKIDSKHGWLLAERLKKNFTTF 346 (655)
T ss_dssp --SSCEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHTTCSCCSCCTTSHHHHHHHHHHHHHHCCC
T ss_pred --CCceEEEcCCCceEEEEEEeCCEEEhhheeeecchHHHHHHHHHHHHHHcCCCccccCCCCcchHHHHHHHHHheEEE
Confidence 3899999999999999999999999999999999999999999999999875 23 23678999999999999
Q ss_pred c-ccHHHHHHHHHhcCCCCceeEee--eCCCCcccccccccChhhHhhhhccCCCCCCCCCccccccchhHHHHHHHhhh
Q 013888 221 S-LDVARDLQIARKRGKDNLLRCTY--VLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRK 297 (434)
Q Consensus 221 ~-~~~~~~~~~~~~~~~~~~~~~~~--~lpd~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (434)
+ .|+. .....| ..|+..+
T Consensus 347 s~~Di~-------------~q~~~f~~r~P~~~~---------------------------------------------- 367 (655)
T 4am6_A 347 QDADVA-------------VQLYNFMNRSPNQPT---------------------------------------------- 367 (655)
T ss_dssp CGGGCC-------------SEEEEEEECCSSSCE----------------------------------------------
T ss_pred cccchh-------------hhhhcceeccCCCCC----------------------------------------------
Confidence 4 4421 011222 2344331
Q ss_pred hccCCccEEEccCccccCCccccCCCCCC---------------------------------------------------
Q 013888 298 RADLAKNEFDLTNERFLVPEMIFQPADLG--------------------------------------------------- 326 (434)
Q Consensus 298 ~~~~~~~~i~l~~er~~~~E~lF~p~~~~--------------------------------------------------- 326 (434)
....+.++.|||++||+||+|.+++
T Consensus 368 ----~ky~i~vgdErflaPe~lF~Pei~~~~~~~~~~~~~~~~~~~~s~d~y~~~~nd~~S~~q~~~~~~~~~~~~~~~~ 443 (655)
T 4am6_A 368 ----EKYEFKLFDEVMLAPLALFFPQIFKLIRTSSHKNSSLEFQLPESRDLFTNELNDWNSLSQFESKEGNLYCDLNDDL 443 (655)
T ss_dssp ----EEEEEEESSHHHHHHHGGGSTHHHHHTSCCCCCCHHHHTTSCCCBCTTTCCBCSCCCHHHHHHHTTCCGGGCCSHH
T ss_pred ----cceEEEECCeehhCchhcCChhhcccccccccccchhhhhcCccccccCCCCCCccchhHHhhhccccCCCCccHh
Confidence 1236888999999999999875321
Q ss_pred ----------------------------CCCCCHHHHHHHHHHh-cC-hhhHH--HhHcCeEEecCCCCCcChHHHHHHh
Q 013888 327 ----------------------------MNQAGLAECIVRAVNS-CH-PYLHS--VLYESIILTGGSTLFPRFAERLERE 374 (434)
Q Consensus 327 ----------------------------~~~~~l~~~I~~~i~~-~~-~d~r~--~l~~nIiltGG~s~~~G~~~RL~~e 374 (434)
....+|..+|.+||.+ |. .|.++ ++++||+|+||+|++|||...|.+.
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pLdkAIi~SIt~a~~~~d~~k~~~~y~nilivGggski~g~~~~L~dr 523 (655)
T 4am6_A 444 KILNRILDAHNIIDQLQDKPENYGNTLKENFAPLEKAIVQSIANASITADVTRMNSFYSNILIVGGSSKIPALDFILTDR 523 (655)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCSCSCSSCCCCCCHHHHHHHHHHHHHHTSCGGGHHHHHTCEEEESTTCCCTTHHHHHHHH
T ss_pred hhhhhhhcccccccccccCCcccccccccccccHHHHHHHHHHhhhccccHHHHHHHhhcEEEEcCcccCccHHHHHHHH
Confidence 0125899999999983 42 26655 9999999999999999999888887
Q ss_pred hcccCCC-------------------------------------------------------------------CceEEE
Q 013888 375 LRPLVPD-------------------------------------------------------------------DYQVKI 387 (434)
Q Consensus 375 L~~~~~~-------------------------------------------------------------------~~~v~v 387 (434)
|...-|. -.+|+|
T Consensus 524 i~i~rp~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~V 603 (655)
T 4am6_A 524 INIWRPSLLSSASFPQFYKKLTKEIKDLEGHYVNAPDKTEDENKQILQAQIKEKIVEELEEQHQNIEHQNGNEHIFPVSI 603 (655)
T ss_dssp HHHHSCSTTTBTTHHHHHHHHHHHHHHHHSTTCSCCSSSCCSSTTSTTHHHHHHHHHHHHHHHHHHHHTTSCCCBCCCCE
T ss_pred HHhhCcccccccccHHHHHHHHHhhhhhhhhhccccccccccchhhhhhhhhhhhhhhhhhhhhhhhhccccCCceeeEE
Confidence 7653331 124789
Q ss_pred ecCCCC---CccccchhhhhcCccccccceeehhHHhhcChHHHHhhcC
Q 013888 388 TTQEDP---LLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 433 (434)
Q Consensus 388 ~~~~~~---~~~~w~Gasila~l~~f~~~~Itr~ey~e~G~~~~~rk~~ 433 (434)
.+++.+ .+++|+||||+|+|++|+++||||+||+|+|+++|++||+
T Consensus 604 ~~~p~~~d~~~~~W~GgSvla~l~~f~e~wIt~~Eyde~G~~il~~k~~ 652 (655)
T 4am6_A 604 IPPPRDMNPALIIWKGASVLAQIKLVEELFITNSDWDVHGSRILQYKCI 652 (655)
T ss_dssp ECCCTTSCGGGHHHHHHHHHTTSHHHHHHCEEHHHHHHHGGGGGGTSCS
T ss_pred eCCccccCcceeEEecceeeeecccHhheeecHHHHhhhcchheEeccc
Confidence 988855 8899999999999999999999999999999999999984
No 8
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=100.00 E-value=3.5e-35 Score=286.88 Aligned_cols=320 Identities=15% Similarity=0.156 Sum_probs=243.9
Q ss_pred CCCeEEEEcCCcceEEeecCCCCCCeeeecCceeeCC-CCceecCcccccccccccccceeecccCCCcccChHHHHHHH
Q 013888 1 MSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLS-SKKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDIW 79 (434)
Q Consensus 1 ~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~-~~~~~~g~~~~~~~~~d~~~~~~~~p~~~g~i~~~d~~e~il 79 (434)
|+.+|+||+||.++++|++++. |...+||+++.+.. .+.+++|+++......+..+..+.+|+++|.+.||+.++.+|
T Consensus 2 ~~~~igIDlGT~~s~v~~~~~~-~~~~~PS~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~~~p~~~g~i~~~~~~~~i~ 80 (344)
T 1jce_A 2 LRKDIGIDLGTANTLVFLRGKG-IVVNEPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKAIRPMRDGVIADYTVALVML 80 (344)
T ss_dssp --CEEEEEECSSEEEEEETTTE-EEEEEESCEEEETTTCCEEEESHHHHTTTTCCCTTEEEECCEETTEESSHHHHHHHH
T ss_pred CCceEEEEcCcCcEEEEECCCC-EEEeeCcEEEEecCCCcEEEEcHHHHHhcccCCCCeEEEecCCCCeeCChHHHHHHH
Confidence 5789999999999999999876 77789999998876 455689998863222333456778999999999999999999
Q ss_pred HHHhhccCCCC-CCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCCC-CCCcEEEEe
Q 013888 80 AHLFSSLLHIS-PSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLS-ETQCSLVVD 157 (434)
Q Consensus 80 ~~~~~~~L~~~-~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~-~~~tglVVD 157 (434)
.+++.+..... +...++++++|..++...|+.+.+ ++|..|++.+.++.+|+++++ ++|... ...+.+|||
T Consensus 81 ~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~-a~~~aG~~~~~li~ep~Aaa~------~~~~~~~~~~~~lVvD 153 (344)
T 1jce_A 81 RYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILD-AGLEAGASKVFLIEEPMAAAI------GSNLNVEEPSGNMVVD 153 (344)
T ss_dssp HHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHH-HHHHTTCSEEEEEEHHHHHHH------HTTCCTTSSSCEEEEE
T ss_pred HHHHHHHhhccccCCCeEEEEECCCCCHHHHHHHHH-HHHHcCCCeEeccCCHHHHHH------hcCCCCCCCceEEEEE
Confidence 99997533322 446899999999999999999887 579999999999999999999 554211 136789999
Q ss_pred cCCCceEEEeccCceecccccEEecccHHHHHHHHHHHHhhcCCCCCChHHHHHHHHhhcccccccHHHHHHHHHhcCCC
Q 013888 158 CGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKD 237 (434)
Q Consensus 158 iG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~c~v~~~~~~~~~~~~~~~~~ 237 (434)
+|+++|+++++..|.++. ....++||+++++.|.+.+..+. ........++++|+.+|+...+...+
T Consensus 154 iGggttdvsv~~~~~~~~--~~~~~lGG~~id~~l~~~l~~~~-~~~~~~~~ae~~K~~l~~~~~~~~~~---------- 220 (344)
T 1jce_A 154 IGGGTTEVAVISLGSIVT--WESIRIAGDEMDEAIVQYVRETY-RVAIGERTAERVKIEIGNVFPSKEND---------- 220 (344)
T ss_dssp ECSSCEEEEEEETTEEEE--EEEESCSHHHHHHHHHHHHHHHH-CEECCHHHHHHHHHHHCBCSCCHHHH----------
T ss_pred eCCCeEEEEEEEcCCEEe--eCCCCccChhHHHHHHHHHHHHh-CcccCHHHHHHHHHHHhccCccccCC----------
Confidence 999999999999998875 45789999999999999887652 22234677999999999876543211
Q ss_pred CceeEeeeCC-----CCcccccccccChhhHhhhhccCCCCCCCCCccccccchhHHHHHHHhhhhccCCccEEEccCcc
Q 013888 238 NLLRCTYVLP-----DGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNER 312 (434)
Q Consensus 238 ~~~~~~~~lp-----d~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~er 312 (434)
...+.+| ++. ...+.++.++
T Consensus 221 ---~~~~~~~~~~~~~g~----------------------------------------------------~~~~~i~~~~ 245 (344)
T 1jce_A 221 ---ELETTVSGIDLSTGL----------------------------------------------------PRKLTLKGGE 245 (344)
T ss_dssp ---HCEEEEEEEETTTTE----------------------------------------------------EEEEEEEHHH
T ss_pred ---cceEEEeccccCCCC----------------------------------------------------ceeEEEeHHH
Confidence 0112222 221 0134455444
Q ss_pred ccCCccccCCCCCCCCCCCHHHHHHHHHHhcChhhHHHhH-cCeEEecCCCCCcChHHHHHHhhcccCCCCceEEEecCC
Q 013888 313 FLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLY-ESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQE 391 (434)
Q Consensus 313 ~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~-~nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~ 391 (434)
|. .+|+|.. ..+.++|.++|.+++.+++..++ ++|+|+||+|++|||.++|++++.. + +..+.
T Consensus 246 ~~---~~~~~~~-----~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~~~~------~--v~~~~ 309 (344)
T 1jce_A 246 VR---EALRSVV-----VAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGI------S--VIRSE 309 (344)
T ss_dssp HH---HHTHHHH-----HHHHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHHSS------C--EEECS
T ss_pred HH---HHHHHHH-----HHHHHHHHHHHHhCCchhccchhhCcEEEECccccchHHHHHHHHHHCC------C--ccccC
Confidence 42 3444421 36888999999999988888888 7999999999999999999999952 2 34466
Q ss_pred CCCccccchhhhhcC-cccccc
Q 013888 392 DPLLGVWRGGSLLAS-SPDFQA 412 (434)
Q Consensus 392 ~~~~~~w~Gasila~-l~~f~~ 412 (434)
+|.+++|.||++++. +++|++
T Consensus 310 ~p~~ava~Gaa~~a~~~~~~~~ 331 (344)
T 1jce_A 310 EPLTAVAKGAGMVLDKVNILKK 331 (344)
T ss_dssp STTTHHHHHHHHGGGCHHHHTT
T ss_pred ChHHHHHHHHHHHHhChHHHHH
Confidence 899999999999987 466643
No 9
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=99.86 E-value=4.2e-22 Score=203.84 Aligned_cols=311 Identities=19% Similarity=0.204 Sum_probs=201.9
Q ss_pred CCCeEEEEcCCcceEEeecCCCCCCee--------eecCceeeCCCCceecCccccccccccc-ccceeec----ccC--
Q 013888 1 MSNIVVLDNGGGLIKAGHGGERDPAVT--------IPNCMYRPLSSKKFIHPSPTAASATEDL-TSAAVRR----PID-- 65 (434)
Q Consensus 1 ~~~~vViD~Gs~~~k~G~ag~~~P~~~--------~ps~~~~~~~~~~~~~g~~~~~~~~~d~-~~~~~~~----p~~-- 65 (434)
|+.+|.||+||.+++++++.+..|..+ +||+++.. ....++|+++......++ ....+++ |++
T Consensus 1 m~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~--~~~~~vG~~A~~~~~~~p~~~~~~Kr~lg~p~~~~ 78 (509)
T 2v7y_A 1 MSKIIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAFK--NGERLVGEVAKRQAITNPNTIISIKRHMGTDYKVE 78 (509)
T ss_dssp CCCEEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECEEEES--SSSEEESHHHHTTTTTCSSEEECGGGTTTSCCCEE
T ss_pred CCCEEEEEcCCceEEEEEEECCEEEEEECCCCCcccceEEEEC--CCcEEECHHHHHhHHhCCCcHHHHHHhcCCCcEEE
Confidence 888999999999999999988878777 89999873 345678988752111121 1112222 665
Q ss_pred -CCcccChHHHHHHHHHHhhccCC------CCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccc
Q 013888 66 -RGYLINSDLQRDIWAHLFSSLLH------ISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYE 138 (434)
Q Consensus 66 -~g~i~~~d~~e~il~~~~~~~L~------~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~ 138 (434)
+|. +|+ .++++.+++.+ |. +......++++.|.+++...|+.+.+. ++..|++.+.++++|.+|++
T Consensus 79 ~~g~--~~~-~~ei~a~~L~~-l~~~ae~~l~~~~~~~VitvPa~~~~~qr~a~~~a-~~~AGl~~~~li~Ep~AAAl-- 151 (509)
T 2v7y_A 79 IEGK--QYT-PQEISAIILQY-LKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDA-GRIAGLEVERIINEPTAAAL-- 151 (509)
T ss_dssp ETTE--EEC-HHHHHHHHHHH-HHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHH-HHHTTCEEEEEEEHHHHHHH--
T ss_pred ECCE--EEc-HHHHHHHHHHH-HHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH-HHHcCCCeEEEecCHHHHHH--
Confidence 664 343 34555555532 21 123347899999999999999988775 58899999999999999998
Q ss_pred cccCCCCCCC-CCCcEEEEecCCCceEEEecc--Ccee-cccccEEecccHHHHHHHHHHHHhhc-----CCCCCCh---
Q 013888 139 ASRRPYGLLS-ETQCSLVVDCGFSFTHAAPVF--QNFT-VNYAVKRIDLGGKALTNYLKELVSYR-----AINVMDE--- 206 (434)
Q Consensus 139 ~~~~~~g~~~-~~~tglVVDiG~~~t~v~pV~--dG~~-~~~~~~~~~~GG~~l~~~l~~ll~~~-----~~~~~~~--- 206 (434)
++|... ...+.+|+|+|+++|+++.+. +|.. +..+....++||+++++.|.++|..+ +.++..+
T Consensus 152 ----ay~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~~l~~~~~~~~~~~~~~~~~~ 227 (509)
T 2v7y_A 152 ----AYGLDKEEDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQFKQEHGIDLSKDKMA 227 (509)
T ss_dssp ----HTTGGGSCSEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCGGGCHHH
T ss_pred ----HHhhccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEecCCCCcCHHHHHHHHHHHHHHHHHHHhCCCcccCHHH
Confidence 444211 135789999999999999776 3543 22333456899999999998877643 2332221
Q ss_pred ----HHHHHHHHhhcccccccHHHHHHHHHhcCCCCceeEeeeCCCCcccccccccChhhHhhhhccCCCCCCCCCcccc
Q 013888 207 ----TFIIDDVKEKLCFVSLDVARDLQIARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVK 282 (434)
Q Consensus 207 ----~~~~~~iKe~~c~v~~~~~~~~~~~~~~~~~~~~~~~~~lpd~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (434)
...++.+|+.++... ...+.+|.......+
T Consensus 228 ~~~l~~~aE~~K~~ls~~~-------------------~~~i~l~~~~~~~~G--------------------------- 261 (509)
T 2v7y_A 228 LQRLKDAAEKAKKELSGVT-------------------QTQISLPFISANENG--------------------------- 261 (509)
T ss_dssp HHHHHHHHHHHHHHTTTCS-------------------EEEEEEEEEEEETTE---------------------------
T ss_pred HHHHHHHHHHHHHhcCCCC-------------------cEEEEEeccccCCCC---------------------------
Confidence 133455555544321 122333211000000
Q ss_pred ccchhHHHHHHHhhhhccCCccEEEccCccccCCccccCCCCCCCCCCCHHHHHHHHHHhcChhhHHHhHcCeEEecCCC
Q 013888 283 DMDRTEVMEEARDRKRADLAKNEFDLTNERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGST 362 (434)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~er~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIiltGG~s 362 (434)
. ....+.|..+.|. .+|+|.. ..+.+.|.++|..+.. .....++|+|+||+|
T Consensus 262 ~------------------~~~~~~itr~~fe---~l~~~~~-----~~i~~~i~~~L~~a~~--~~~~i~~VvLvGG~s 313 (509)
T 2v7y_A 262 P------------------LHLEMTLTRAKFE---ELSAHLV-----ERTMGPVRQALQDAGL--TPADIDKVILVGGST 313 (509)
T ss_dssp E------------------EEEEEEEEHHHHH---HHTHHHH-----HTTHHHHHHHHHHHTC--CGGGCSEEEEESGGG
T ss_pred C------------------eeEEEEEEHHHHH---HHHHHHH-----HHHHHHHHHHHHHcCC--ChhHCcEEEEECCcc
Confidence 0 0012344444332 3344321 2467888888888753 234568999999999
Q ss_pred CCcChHHHHHHhhcccCCCCceEEEecCCCCCccccchhhhhcC
Q 013888 363 LFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLAS 406 (434)
Q Consensus 363 ~~~G~~~RL~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasila~ 406 (434)
.+|++.++|++++.. .+....+|..++|.||+++|.
T Consensus 314 ~~p~v~~~l~~~f~~--------~~~~~~~p~~aVa~Gaa~~a~ 349 (509)
T 2v7y_A 314 RIPAVQEAIKRELGK--------EPHKGVNPDEVVAIGAAIQGG 349 (509)
T ss_dssp GCHHHHHHHHHHHSS--------CCBCCSCTTTHHHHHHHHHHH
T ss_pred cChHHHHHHHHHhCC--------CcCcCCCchhhhHhhHHHHHH
Confidence 999999999999953 133456889999999999875
No 10
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=99.85 E-value=6.3e-21 Score=179.57 Aligned_cols=242 Identities=15% Similarity=0.108 Sum_probs=176.4
Q ss_pred eEEEEcCCcceEEeecCCCCCCeeeecCceeeCCCCceecCcccccccccccccceeecccCCCcccChHHHHHHHHHHh
Q 013888 4 IVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDIWAHLF 83 (434)
Q Consensus 4 ~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~p~~~g~i~~~d~~e~il~~~~ 83 (434)
.++||+||.++|+....++. . + + |.. .....|+.+|.+.||+.++.+|++++
T Consensus 30 ~~gIDiGS~s~k~vi~~~~~-~-~----l-----------~~~-----------~~~~~~l~~g~i~d~~~~~~~l~~~~ 81 (272)
T 3h1q_A 30 KVGVDLGTADIVLVVTDQEG-I-P----V-----------AGA-----------LKWASVVKDGLVVDYIGAIQIVRELK 81 (272)
T ss_dssp EEEEECCSSEEEEEEECTTC-C-E----E-----------EEE-----------EEECCCCBTTBCTTHHHHHHHHHHHH
T ss_pred EEEEEcccceEEEEEECCCC-c-E----E-----------EEE-----------eecccccCCCEEEcHHHHHHHHHHHH
Confidence 68999999999998843321 1 1 1 110 11235899999999999999999998
Q ss_pred hccCCC-CCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCCCCCCcEEEEecCCCc
Q 013888 84 SSLLHI-SPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSF 162 (434)
Q Consensus 84 ~~~L~~-~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~~tglVVDiG~~~ 162 (434)
...... ......++++.|.......|+ .++.+++.+|++...+..++.++++ +.| ..+++|||+|++.
T Consensus 82 ~~~~~~~~~~~~~~v~tvp~~~~~~~~~-~~~~~~~~~g~~~~~i~~e~~A~a~------~~~----~~~~~viDiGggs 150 (272)
T 3h1q_A 82 AKVERLLGSELFQAATAIPPGTVGRNAE-ACGHVVAGAGLELVTLVDEPVAAAR------ALG----INDGIVVDIGGGT 150 (272)
T ss_dssp HHHHHHSSSCCCEEEEECCSCC---CTT-HHHHHHHHTTCEEEEEECHHHHHHH------HHT----CSSEEEEEECSSC
T ss_pred HHHHHhcCCccCeEEEEcCCCCCHHHHH-HHHHHHHHcCCeeeecccHHHHHHH------HHc----CCCEEEEEECCCc
Confidence 643322 122356777777766555444 5577899999999999999999999 666 6789999999999
Q ss_pred eEEEeccCceecccccEEecccHHHHHHHHHHHHhhcCCCCCChHHHHHHHHhhcccccccHHHHHHHHHhcCCCCceeE
Q 013888 163 THAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKDNLLRC 242 (434)
Q Consensus 163 t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~c~v~~~~~~~~~~~~~~~~~~~~~~ 242 (434)
|.++++.+|.++.. ...++||.++++.+.+.+. .+...++++|+++|. .+++...-
T Consensus 151 t~~~~~~~g~~~~~--~~~~~Gg~~~~~~l~~~l~-------~~~~~ae~~k~~~~~-----~~~~~~~~---------- 206 (272)
T 3h1q_A 151 TGIAVIEKGKITAT--FDEPTGGTHLSLVLAGSYK-------IPFEEAETIKKDFSR-----HREIMRVV---------- 206 (272)
T ss_dssp EEEEEEETTEEEEE--CCBSCCHHHHHHHHHHHHT-------CCHHHHHHHHHSSTT-----HHHHHHHH----------
T ss_pred EEEEEEECCEEEEE--ecCCCcHHHHHHHHHHHhC-------CCHHHHHHHHHhcCC-----HHHHHHHH----------
Confidence 99999999998853 5689999999999998874 235668888887651 01111100
Q ss_pred eeeCCCCcccccccccChhhHhhhhccCCCCCCCCCccccccchhHHHHHHHhhhhccCCccEEEccCccccCCccccCC
Q 013888 243 TYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLVPEMIFQP 322 (434)
Q Consensus 243 ~~~lpd~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~er~~~~E~lF~p 322 (434)
+.++
T Consensus 207 --------------------------------------------------------------------------~~~~-- 210 (272)
T 3h1q_A 207 --------------------------------------------------------------------------RPVI-- 210 (272)
T ss_dssp --------------------------------------------------------------------------HHHH--
T ss_pred --------------------------------------------------------------------------HHHH--
Confidence 0000
Q ss_pred CCCCCCCCCHHHHHHHHHHhcChhhHHHhHcCeEEecCCCCCcChHHHHHHhhcccCCCCceEEEecCCCCCccccchhh
Q 013888 323 ADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGS 402 (434)
Q Consensus 323 ~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gas 402 (434)
..+.+.|.+++.+++ ...+|+|+||+|++|||.++|+++|.. .+..+.+|.++.|+||+
T Consensus 211 -------~~i~~~i~~~l~~~~------~~~~ivL~GG~a~~~~l~~~l~~~l~~--------~v~~~~~p~~a~a~Gaa 269 (272)
T 3h1q_A 211 -------EKMALIVKEVIKNYD------QTLPVYVVGGTAYLTGFSEEFSRFLGK--------EVQVPIHPLLVTPLGIA 269 (272)
T ss_dssp -------HHHHHHHHHHTTTSC------SSCCEEEESGGGGSTTHHHHHHHHHSS--------CCBCCSSGGGHHHHHHH
T ss_pred -------HHHHHHHHHHHHhcC------CCCEEEEECCccchhhHHHHHHHHhCC--------CccccCChHHHHHHHHH
Confidence 136777788887776 134999999999999999999999943 23446789999999999
Q ss_pred hhc
Q 013888 403 LLA 405 (434)
Q Consensus 403 ila 405 (434)
++|
T Consensus 270 l~a 272 (272)
T 3h1q_A 270 LFG 272 (272)
T ss_dssp TTC
T ss_pred hcC
Confidence 875
No 11
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=99.83 E-value=7.1e-21 Score=188.17 Aligned_cols=315 Identities=15% Similarity=0.162 Sum_probs=194.0
Q ss_pred CCCeEEEEcCCcceEEeecCCCCCCee--------eecCceeeCCCCceecCcccccccccccccc--ee----------
Q 013888 1 MSNIVVLDNGGGLIKAGHGGERDPAVT--------IPNCMYRPLSSKKFIHPSPTAASATEDLTSA--AV---------- 60 (434)
Q Consensus 1 ~~~~vViD~Gs~~~k~G~ag~~~P~~~--------~ps~~~~~~~~~~~~~g~~~~~~~~~d~~~~--~~---------- 60 (434)
|+..|-||+||.++.+++..+..|..+ +||+++...+ ...++|.++......++... .+
T Consensus 1 m~~~vGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~ 79 (383)
T 1dkg_D 1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQD-GETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQD 79 (383)
T ss_dssp --CCCEEECCSSEEEEEEEETTEEEECCCTTSCSEEECEEEECTT-SCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCS
T ss_pred CCcEEEEEcCCCCEEEEEEECCeeEEEECCCCCcccceEEEEECC-CCEEECHHHHHhhhhCccceeehhHHhhCCCCCc
Confidence 788899999999999998855545444 6888876543 23457766541100111000 00
Q ss_pred --------ecccC-------------CCcccCh-HHHHHHHHHHhh---ccCCCCCCCCcEEEeccCCCCHHHHHHHHHH
Q 013888 61 --------RRPID-------------RGYLINS-DLQRDIWAHLFS---SLLHISPSASSLLLTEPLFALPSIQRATDEL 115 (434)
Q Consensus 61 --------~~p~~-------------~g~i~~~-d~~e~il~~~~~---~~L~~~~~~~~vll~e~~~~~~~~re~l~e~ 115 (434)
.+|+. .|..... +....+++++.. +.++ .....++++.|..++...|+.+.+.
T Consensus 80 ~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~i~~~~L~~l~~~a~~~~~--~~~~~~vitvP~~~~~~~r~~~~~a 157 (383)
T 1dkg_D 80 EEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLG--EPVTEAVITVPAYFNDAQRQATKDA 157 (383)
T ss_dssp HHHHHHTTTCSSEEEECSSSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHS--SCCCEEEECBCTTCCHHHHHHHHHH
T ss_pred HHHHHHhhcCCeEEEEcCCCcEEEEECCEEEcHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEEECCCCCHHHHHHHHHH
Confidence 02321 2322222 333445555543 2233 2336789999999999999988775
Q ss_pred HhhhcCCceeeeccccccccccccccCCCCCCC--CCCcEEEEecCCCceEEEeccCc------eec-ccccEEecccHH
Q 013888 116 VFEDFNFKSLFVADPPSLVHLYEASRRPYGLLS--ETQCSLVVDCGFSFTHAAPVFQN------FTV-NYAVKRIDLGGK 186 (434)
Q Consensus 116 lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~--~~~tglVVDiG~~~t~v~pV~dG------~~~-~~~~~~~~~GG~ 186 (434)
++..|++.+.++.+|.++++ +++... ...+.+|||+|+++|+++.+..+ ... .......++||+
T Consensus 158 -~~~aGl~~~~li~Ep~Aaa~------~~~~~~~~~~~~~lVvD~Gggttdvsv~~~~~~~~~~~~~v~~~~~~~~lGG~ 230 (383)
T 1dkg_D 158 -GRIAGLEVKRIINEPTAAAL------AYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGE 230 (383)
T ss_dssp -HHHTTCEESCCCBHHHHHHH------HHTCCC-CCEEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHH
T ss_pred -HHHcCCceEEEeccHHHHHH------HHHhccCCCCcEEEEEEcCCCeEEEEEEEEEecCCCCeEEEEEEeCCCCCCHH
Confidence 68899999999999999998 443211 13478999999999999977654 221 112334699999
Q ss_pred HHHHHHHHHHhhc-----CCCCCCh-------HHHHHHHHhhcccccccHHHHHHHHHhcCCCCceeEeeeCCCCccccc
Q 013888 187 ALTNYLKELVSYR-----AINVMDE-------TFIIDDVKEKLCFVSLDVARDLQIARKRGKDNLLRCTYVLPDGVTHTK 254 (434)
Q Consensus 187 ~l~~~l~~ll~~~-----~~~~~~~-------~~~~~~iKe~~c~v~~~~~~~~~~~~~~~~~~~~~~~~~lpd~~~~~~ 254 (434)
++++.|.+++..+ +.++..+ ...++++|+.+|..... .-.....+..++|.
T Consensus 231 ~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~-------------~i~i~~~~~~~~G~---- 293 (383)
T 1dkg_D 231 DFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQT-------------DVNLPYITADATGP---- 293 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSTTCHHHHHHHHHHHHHHHHHTTSSSEE-------------EEEEEEEEEETTEE----
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHhCCCCce-------------EEEEecccccCCCC----
Confidence 9999999887654 3333221 23456666665543210 00000001111210
Q ss_pred ccccChhhHhhhhccCCCCCCCCCccccccchhHHHHHHHhhhhccCCccEEEccCccccCCccccCCCCCCCCCCCHHH
Q 013888 255 GFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLVPEMIFQPADLGMNQAGLAE 334 (434)
Q Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~er~~~~E~lF~p~~~~~~~~~l~~ 334 (434)
....+.++.+.|. .+|+|.. ..+.+
T Consensus 294 -----------------------------------------------~~~~~~it~~~~~---~~~~~~~-----~~i~~ 318 (383)
T 1dkg_D 294 -----------------------------------------------KHMNIKVTRAKLE---SLVEDLV-----NRSIE 318 (383)
T ss_dssp -----------------------------------------------EEEEEEEEHHHHH---HHSHHHH-----HHHHH
T ss_pred -----------------------------------------------eeEEEEEeHHHHH---HHHHHHH-----HHHHH
Confidence 0002344444332 3344321 25778
Q ss_pred HHHHHHHhcChhhHHHhHcCeEEecCCCCCcChHHHHHHhhcccCCCCceEEEecCCCCCccccchhhhhcCc
Q 013888 335 CIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLASS 407 (434)
Q Consensus 335 ~I~~~i~~~~~d~r~~l~~nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasila~l 407 (434)
+|.++|.++.. .....++|+|+||+|.+||+.++|++++.. .+..+.+|.+++|+||+++|.+
T Consensus 319 ~i~~~l~~~~~--~~~~i~~IvL~GG~s~~p~l~~~l~~~~~~--------~v~~~~~p~~ava~Gaa~~a~~ 381 (383)
T 1dkg_D 319 LLKVALQDAGL--SVSDIDDVILVGGQTRMPMVQKKVAEFFGK--------EPRKDVNPDEAVAIGAAVQGGV 381 (383)
T ss_dssp HHHHHHHTTTC--CTTTCCEEEEESGGGGSHHHHHHHHHHHSS--------CCBCSSCTTTHHHHHHHHHTTT
T ss_pred HHHHHHHHcCC--CHhhCCEEEEecCccccHHHHHHHHHHhCC--------CCCCCcChHHHHHHHHHHHHHh
Confidence 88888888763 234568999999999999999999999952 2345678999999999999865
No 12
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=99.80 E-value=1.5e-19 Score=179.27 Aligned_cols=314 Identities=15% Similarity=0.175 Sum_probs=183.6
Q ss_pred CCeEEEEcCCcceEEeecCCCCCCee--------eecCceeeCCCCceecCcccccccccccc--cceeecccCC-----
Q 013888 2 SNIVVLDNGGGLIKAGHGGERDPAVT--------IPNCMYRPLSSKKFIHPSPTAASATEDLT--SAAVRRPIDR----- 66 (434)
Q Consensus 2 ~~~vViD~Gs~~~k~G~ag~~~P~~~--------~ps~~~~~~~~~~~~~g~~~~~~~~~d~~--~~~~~~p~~~----- 66 (434)
+.+|.||+||.++++++..+..|..+ +||+++...+ ..++|+++......+.. ...+++.+.+
T Consensus 18 ~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~--~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 95 (394)
T 3qfu_A 18 GTVIGIDLGTTYSCVAVMKNGKTEILANEQGNRITPSYVAFTDD--ERLIGDAAKNQVAANPQNTIFDIKRLIGLKYNDR 95 (394)
T ss_dssp CSCEEEEECSSEEEEEEECSSCEEECCCTTSCSSEECCEEECSS--CEEESHHHHHTGGGCGGGEECCGGGTTTCCTTCH
T ss_pred CCEEEEEeCcCcEEEEEEECCeeEEEECCCCCEeeceEEEEeCC--cEEecHHHHHhhHhCcccCHHHHHHHhCCCCCcH
Confidence 45799999999999999987776544 2888876543 45678766421011110 0111111100
Q ss_pred ---------------------------C--cccCh-HHHHHHHHHHhh---ccCCCCCCCCcEEEeccCCCCHHHHHHHH
Q 013888 67 ---------------------------G--YLINS-DLQRDIWAHLFS---SLLHISPSASSLLLTEPLFALPSIQRATD 113 (434)
Q Consensus 67 ---------------------------g--~i~~~-d~~e~il~~~~~---~~L~~~~~~~~vll~e~~~~~~~~re~l~ 113 (434)
| ..... +....+++++.. +.++ ..-..++++.|..++...|+.+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~a~~l~~l~~~a~~~~~--~~~~~~vitvP~~~~~~~r~~~~ 173 (394)
T 3qfu_A 96 SVQKDIKHLPFNVVNKDGKPAVEVSVKGEKKVFTPEEISGMILGKMKQIAEDYLG--TKVTHAVVTVPAYFNDAQRQATK 173 (394)
T ss_dssp HHHHHHTTCSSEEEEETTEEEEEEESSSSEEEECHHHHHHHHHHHHHHHHHHHHT--SCCCEEEEEECTTCCHHHHHHHH
T ss_pred HHHHHhhcCCeEEEcCCCceEEEEEeCCCceEEcHHHHHHHHHHHHHHHHHHhcC--CCcceEEEEECCCCCHHHHHHHH
Confidence 1 01111 223334444332 2232 23468999999999999999886
Q ss_pred HHHhhhcCCceeeeccccccccccccccCCCCCCC--CCCcEEEEecCCCceEEEecc--Cceeccc-ccEEecccHHHH
Q 013888 114 ELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLS--ETQCSLVVDCGFSFTHAAPVF--QNFTVNY-AVKRIDLGGKAL 188 (434)
Q Consensus 114 e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~--~~~tglVVDiG~~~t~v~pV~--dG~~~~~-~~~~~~~GG~~l 188 (434)
+.+ +..|++.+.++.+|.++++ ++|+.. ...+-+|||+|+++|+++.+. ++..... .....++||.++
T Consensus 174 ~a~-~~aGl~~~~li~Ep~Aaa~------~~~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~~~~~~~~~~lGG~~~ 246 (394)
T 3qfu_A 174 DAG-TIAGLNVLRIVNEPTAAAI------AYGLDKSDKEHQIIVYDLGGGTFDVSLLSIENGVFEVQATSGDTHLGGEDF 246 (394)
T ss_dssp HHH-HHTTCEEEEEEEHHHHHHH------HTTTTSCSSCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHH
T ss_pred HHH-HHcCCceEEEecCHHHHHH------HHhhccCCCCceEEEEEcCCCceeEEEEEEeCCEEEEEEEcCCCCCChHHH
Confidence 665 8899999999999999998 443211 133558999999999877664 4432222 233479999999
Q ss_pred HHHHHHHHhhc-----CCCCCChHHHHHHHHhhcccccccHHHHHHHHHhcCCCCceeEeeeCC---CCcccccccccCh
Q 013888 189 TNYLKELVSYR-----AINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKDNLLRCTYVLP---DGVTHTKGFVKDP 260 (434)
Q Consensus 189 ~~~l~~ll~~~-----~~~~~~~~~~~~~iKe~~c~v~~~~~~~~~~~~~~~~~~~~~~~~~lp---d~~~~~~~~i~~~ 260 (434)
++.|.+.+..+ +.+...+......+++. .+.++..-... ....+.++ ++.
T Consensus 247 d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------ae~~K~~ls~~-~~~~~~~~~~~~~~---------- 304 (394)
T 3qfu_A 247 DYKIVRQLIKAFKKKHGIDVSDNNKALAKLKRE-----------AEKAKRALSSQ-MSTRIEIDSFVDGI---------- 304 (394)
T ss_dssp HHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHH-----------HHHHHHHTTTC-SEEEEEEEEEETTE----------
T ss_pred HHHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHH-----------HHHHHHHcccC-CcEEEEEEeccCCc----------
Confidence 99998877432 22222222222222221 11111000000 01111111 110
Q ss_pred hhHhhhhccCCCCCCCCCccccccchhHHHHHHHhhhhccCCccEEEccCccccCCccccCCCCCCCCCCCHHHHHHHHH
Q 013888 261 DAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLVPEMIFQPADLGMNQAGLAECIVRAV 340 (434)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~er~~~~E~lF~p~~~~~~~~~l~~~I~~~i 340 (434)
...+.+..+.| |.++.|. ...+.+.|.++|
T Consensus 305 ------------------------------------------~~~~~i~r~~~---~~~~~~~-----~~~i~~~i~~~l 334 (394)
T 3qfu_A 305 ------------------------------------------DLSETLTRAKF---EELNLDL-----FKKTLKPVEKVL 334 (394)
T ss_dssp ------------------------------------------EEEEEEEHHHH---HHHHHHH-----HHHTHHHHHHHH
T ss_pred ------------------------------------------eeEEEEEHHHH---HHHHHHH-----HHHHHHHHHHHH
Confidence 00222332222 1222221 124677788888
Q ss_pred HhcChhhHHHhHcCeEEecCCCCCcChHHHHHHhhcccCCCCceEEEecCCCCCccccchhhhhcCc
Q 013888 341 NSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLASS 407 (434)
Q Consensus 341 ~~~~~d~r~~l~~nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasila~l 407 (434)
.++..+ ....++|+|+||+|.+|++.++|++.+.. ..+..+.+|..++|.||+++|.+
T Consensus 335 ~~~~~~--~~~i~~VvLvGG~s~~p~l~~~l~~~~~~-------~~v~~~~~p~~ava~Gaa~~a~~ 392 (394)
T 3qfu_A 335 QDSGLE--KKDVDDIVLVGGSTRIPKVQQLLESYFDG-------KKASKGINPDEAVAYGAAVQAGV 392 (394)
T ss_dssp HHHTCC--GGGCCEEEEESGGGGSHHHHHHHHHHTTT-------CCCBCCSCTTTHHHHHHHHHHHH
T ss_pred HHcCCC--HHHCCEEEEECCccccHHHHHHHHHHcCC-------CCCCCCcCHHHHHHHHHHHHHHh
Confidence 877654 34568999999999999999999999832 13445668999999999998753
No 13
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=99.72 E-value=2.5e-17 Score=163.80 Aligned_cols=312 Identities=16% Similarity=0.161 Sum_probs=180.9
Q ss_pred CCeEEEEcCCcceEEeecCCCCCCe--------eeecCceeeCCCCceecCcccccccccccccceeecccCCCc-----
Q 013888 2 SNIVVLDNGGGLIKAGHGGERDPAV--------TIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVRRPIDRGY----- 68 (434)
Q Consensus 2 ~~~vViD~Gs~~~k~G~ag~~~P~~--------~~ps~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~p~~~g~----- 68 (434)
..+|.||+|+.++++++..+..|.. .+||+++...+ ..++|+++......+.. ...+.+++..
T Consensus 23 ~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~--~~~vG~~A~~~~~~~~~--~~~~~~Kr~lg~~~~ 98 (404)
T 3i33_A 23 MPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT--ERLIGDAAKNQVAMNPT--NTIFDAKRLIGRKFE 98 (404)
T ss_dssp CCCEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECCEEECSS--CEEETHHHHHTTTTCST--TEECCGGGTTTCCTT
T ss_pred CCEEEEEcCCccEEEEEEECCeeEEEECCCCCcccceEEEECCC--CEEecHHHHHhhHhChh--hhHHHHHHHhCCCCC
Confidence 3679999999999999987665432 34777776443 45678776411011110 1111121111
Q ss_pred ---------------------------------ccCh-HHHHHHHHHHhh---ccCCCCCCCCcEEEeccCCCCHHHHHH
Q 013888 69 ---------------------------------LINS-DLQRDIWAHLFS---SLLHISPSASSLLLTEPLFALPSIQRA 111 (434)
Q Consensus 69 ---------------------------------i~~~-d~~e~il~~~~~---~~L~~~~~~~~vll~e~~~~~~~~re~ 111 (434)
.... +....+++++.. ..++. .-..++++.|..++...|+.
T Consensus 99 ~~~~~~~~~~~p~~~~~~~g~~~~~v~~~~~~~~~~~~ei~a~~L~~l~~~a~~~~~~--~~~~~vitvPa~~~~~~r~~ 176 (404)
T 3i33_A 99 DATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEAYLGG--KVHSAVITVPAYFNDSQRQA 176 (404)
T ss_dssp SHHHHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSS--CCCEEEEEECTTCCHHHHHH
T ss_pred cHHHHHHHhhCCceEEccCCceEEEEEeCCCceEEcHHHHHHHHHHHHHHHHHHHhcc--CCCcEEEEECCCCCHHHHHH
Confidence 1111 223344444432 22332 33679999999999999988
Q ss_pred HHHHHhhhcCCceeeeccccccccccccccCCCCCCC-----CCCcEEEEecCCCceEEEecc--Ccee-cccccEEecc
Q 013888 112 TDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLS-----ETQCSLVVDCGFSFTHAAPVF--QNFT-VNYAVKRIDL 183 (434)
Q Consensus 112 l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~-----~~~tglVVDiG~~~t~v~pV~--dG~~-~~~~~~~~~~ 183 (434)
+.+. ++..|++.+.++.+|.+|+++ ++... ...+-+|||+|.++|+++.+. +|.. +.......++
T Consensus 177 ~~~a-~~~AGl~~~~li~Ep~AAa~~------~~~~~~~~~~~~~~vlV~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~l 249 (404)
T 3i33_A 177 TKDA-GTITGLNVLRIINEPTAAAIA------YGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHL 249 (404)
T ss_dssp HHHH-HHHHTCEEEEEEEHHHHHHHH------TTTTSSCSSSSCCEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTC
T ss_pred HHHH-HHHcCCCeEEEeccHHHHHHH------HHhhcccccCCCceEEEEECCCCcEEEEEEEEeCCeEEEEEEeCCCCC
Confidence 8665 788999999999999999983 33211 134569999999999998774 4332 2223344799
Q ss_pred cHHHHHHHHHHHHhhc-----CCCCCChHHHHHHHHhhcccccccHHHHHHHHHhcCCCCceeEeeeCC---CCcccccc
Q 013888 184 GGKALTNYLKELVSYR-----AINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKDNLLRCTYVLP---DGVTHTKG 255 (434)
Q Consensus 184 GG~~l~~~l~~ll~~~-----~~~~~~~~~~~~~iKe~~c~v~~~~~~~~~~~~~~~~~~~~~~~~~lp---d~~~~~~~ 255 (434)
||.++++.|.+.+..+ +.+...+......+++ +.+.++..-... ....+.++ ++.
T Consensus 250 GG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~-----------~ae~~K~~ls~~-~~~~~~~~~~~~g~----- 312 (404)
T 3i33_A 250 GGEDFDNRMVSHLAEEFKRKHKKDIGPNKRAVRRLRT-----------ACERAKRTLSSS-TQASIEIDSLYEGV----- 312 (404)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHH-----------HHHHHHHHTTTS-SEEEEEEEEEETTE-----
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHH-----------HHHHHHHhCCcC-cceEEEEeeccCCc-----
Confidence 9999999998877432 2222222222222211 111111100000 01111111 110
Q ss_pred cccChhhHhhhhccCCCCCCCCCccccccchhHHHHHHHhhhhccCCccEEEccCccccCCccccCCCCCCCCCCCHHHH
Q 013888 256 FVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLVPEMIFQPADLGMNQAGLAEC 335 (434)
Q Consensus 256 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~er~~~~E~lF~p~~~~~~~~~l~~~ 335 (434)
...+.+..+.| |.++.|. ...+.+.
T Consensus 313 -----------------------------------------------~~~~~i~r~~~---~~~~~~~-----~~~i~~~ 337 (404)
T 3i33_A 313 -----------------------------------------------DFYTSITRARF---EELNADL-----FRGTLEP 337 (404)
T ss_dssp -----------------------------------------------EEEEEEEHHHH---HHHTHHH-----HHHTHHH
T ss_pred -----------------------------------------------eeEEEEcHHHH---HHHHHHH-----HHHHHHH
Confidence 00233333222 1222221 0235677
Q ss_pred HHHHHHhcChhhHHHhHcCeEEecCCCCCcChHHHHHHhhcccCCCCceEEEecCCCCCccccchhhhhcCc
Q 013888 336 IVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLASS 407 (434)
Q Consensus 336 I~~~i~~~~~d~r~~l~~nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasila~l 407 (434)
|.++|..+..+ ......|+|+||+|.+|++.++|++.+... .+..+.+|..+++.||+++|.+
T Consensus 338 i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~-------~v~~~~~p~~ava~Gaa~~a~~ 400 (404)
T 3i33_A 338 VEKALRDAKLD--KGQIQEIVLVGGSTRIPKIQKLLQDFFNGK-------ELNKSINPDEAVAYGAAVQAAI 400 (404)
T ss_dssp HHHHHHHHTCC--GGGCCEEEEESGGGGCHHHHHHHHHHTTTC-------CCBCSSCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCC--HhhCCEEEEECCccccHHHHHHHHHHcCCC-------CCCCCcCHHHHHHHHHHHHHHH
Confidence 77777766443 244688999999999999999999988322 2445568999999999999754
No 14
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=99.64 E-value=2.8e-15 Score=154.56 Aligned_cols=310 Identities=16% Similarity=0.170 Sum_probs=182.1
Q ss_pred CCCeEEEEcCCcceEEeecCCCCCC--------eeeecCceeeCCCCceecCccccccccccccc--ceeec--------
Q 013888 1 MSNIVVLDNGGGLIKAGHGGERDPA--------VTIPNCMYRPLSSKKFIHPSPTAASATEDLTS--AAVRR-------- 62 (434)
Q Consensus 1 ~~~~vViD~Gs~~~k~G~ag~~~P~--------~~~ps~~~~~~~~~~~~~g~~~~~~~~~d~~~--~~~~~-------- 62 (434)
|..+|-||+|+.++.+++..+..|. ..+||+++...+ ..++|.+|......++.+ +.+++
T Consensus 3 m~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~--~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d 80 (554)
T 1yuw_A 3 KGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT--ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDD 80 (554)
T ss_dssp SCCCEEEEECSSEEEEEEECSSSEEECCCTTSCSEEECCEEECSS--CEEETHHHHTTTTTCGGGEECCGGGTTTCCSSC
T ss_pred CCCEEEEEeCcccEEEEEEECCEEEEEECCCCCeecceEEEEcCC--cEEEcHHHHHhhhhChhhehHhhHHhcCCCCCc
Confidence 5678999999999999998655433 235888876543 456787654210111100 00111
Q ss_pred ----------ccC----CCc------------ccC-hHHHHHHHHHHhh---ccCCCCCCCCcEEEeccCCCCHHHHHHH
Q 013888 63 ----------PID----RGY------------LIN-SDLQRDIWAHLFS---SLLHISPSASSLLLTEPLFALPSIQRAT 112 (434)
Q Consensus 63 ----------p~~----~g~------------i~~-~d~~e~il~~~~~---~~L~~~~~~~~vll~e~~~~~~~~re~l 112 (434)
|+. +|. ... .+....+|+++.. .+++.+ -..++++.|..++...|+.+
T Consensus 81 ~~v~~~~~~~p~~v~~~~g~~~~~v~~~~~~~~~sp~ei~a~~L~~lk~~ae~~lg~~--v~~~VitVPa~f~~~qr~a~ 158 (554)
T 1yuw_A 81 AVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKT--VTNAVVTVPAYFNDSQRQAT 158 (554)
T ss_dssp SHHHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSC--CCEEEEEECTTCCHHHHHHH
T ss_pred HHHHHHhhcCCeEEEecCCceEEEEEECCCceEEcHHHHHHHHHHHHHHHHHHHhCCC--CCeEEEEECCCCCHHHHHHH
Confidence 110 111 011 1233344444432 234422 25789999999999999888
Q ss_pred HHHHhhhcCCceeeeccccccccccccccCCCCCCC---CCCcEEEEecCCCceEEEecc--Ccee-cccccEEecccHH
Q 013888 113 DELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLS---ETQCSLVVDCGFSFTHAAPVF--QNFT-VNYAVKRIDLGGK 186 (434)
Q Consensus 113 ~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~---~~~tglVVDiG~~~t~v~pV~--dG~~-~~~~~~~~~~GG~ 186 (434)
.+ .++..|++.+.++.+|.+|++ ++|+.. ...+.+|+|+|+++++++.+. +|.. +.......++||+
T Consensus 159 ~~-A~~~AGl~~~~li~EP~AAAl------ay~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~ 231 (554)
T 1yuw_A 159 KD-AGTIAGLNVLRIINEPTAAAI------AYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGE 231 (554)
T ss_dssp HH-HHHTTTCEEEEEEEHHHHHHH------HTTCSTTCSSCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHH
T ss_pred HH-HHHHcCCCeEEEeCcHHHHHH------HHHhhccCCCCcEEEEEEcCCCeEEEEEEEEcCCcEEEEEEeCCCCCCHH
Confidence 66 568889999999999999998 444221 135679999999999999876 6754 2333445699999
Q ss_pred HHHHHHHHHHhhc-----CCCCCChH-------HHHHHHHhhcccccccHHHHHHHHHhcCCCCceeEeeeCCCCccccc
Q 013888 187 ALTNYLKELVSYR-----AINVMDET-------FIIDDVKEKLCFVSLDVARDLQIARKRGKDNLLRCTYVLPDGVTHTK 254 (434)
Q Consensus 187 ~l~~~l~~ll~~~-----~~~~~~~~-------~~~~~iKe~~c~v~~~~~~~~~~~~~~~~~~~~~~~~~lpd~~~~~~ 254 (434)
++++.|.+.+..+ +.++..+. ..++.+|+.++... ...+.+|.-..
T Consensus 232 d~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~-------------------~~~i~i~~~~~--- 289 (554)
T 1yuw_A 232 DFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSST-------------------QASIEIDSLYE--- 289 (554)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCTTSCHHHHHHHHHHHHHHHHHHTTSS-------------------EEEEEETTCSS---
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHhhhcccCc-------------------eEEEEEeeccC---
Confidence 9999988777431 22332222 22333343332110 12223321100
Q ss_pred ccccChhhHhhhhccCCCCCCCCCccccccchhHHHHHHHhhhhccCCccEEEccCccccCCccccCCCCCCCCCCCHHH
Q 013888 255 GFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLVPEMIFQPADLGMNQAGLAE 334 (434)
Q Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~er~~~~E~lF~p~~~~~~~~~l~~ 334 (434)
+....+.+..+.| |.++.|-. ..+.+
T Consensus 290 ----------------------------------------------g~~~~~~ltr~~~---e~l~~~~~-----~~i~~ 315 (554)
T 1yuw_A 290 ----------------------------------------------GIDFYTSITRARF---EELNADLF-----RGTLD 315 (554)
T ss_dssp ----------------------------------------------SCCEEEEEEHHHH---HHHTHHHH-----HHTTH
T ss_pred ----------------------------------------------CceEEEEEEHHHH---HHHHHHHH-----HHHHH
Confidence 0000223332222 11222210 12345
Q ss_pred HHHHHHHhcChhhHHHhHcCeEEecCCCCCcChHHHHHHhhcccCCCCceEEEecCCCCCccccchhhhhcC
Q 013888 335 CIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLAS 406 (434)
Q Consensus 335 ~I~~~i~~~~~d~r~~l~~nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasila~ 406 (434)
.|.+++..+.. ...-...|+|+||+|.+|++.++|++.+... .+....+|..+++.||+++|.
T Consensus 316 ~i~~~L~~a~~--~~~~i~~VvLvGG~srip~v~~~l~~~f~~~-------~v~~~~np~~aVA~Gaa~~a~ 378 (554)
T 1yuw_A 316 PVEKALRDAKL--DKSQIHDIVLVGGSTRIPKIQKLLQDFFNGK-------ELNKSINPDEAVAYGAAVQAA 378 (554)
T ss_dssp HHHHHHHHTTC--CGGGCCEEEEESGGGGCHHHHHHHHHHTTTC-------CCBCCSCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--ChhhCcEEEEECCcccChHHHHHHHHHcCCC-------ccccCCCchhHHHHHHHHHHH
Confidence 56666665432 1234589999999999999999999988532 233456889999999999874
No 15
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=99.61 E-value=2.6e-15 Score=156.35 Aligned_cols=315 Identities=16% Similarity=0.177 Sum_probs=184.4
Q ss_pred CCCeEEEEcCCcceEEeecCCCCCCee--------eecCceeeCCCCceecCccccccccccccc--cee----------
Q 013888 1 MSNIVVLDNGGGLIKAGHGGERDPAVT--------IPNCMYRPLSSKKFIHPSPTAASATEDLTS--AAV---------- 60 (434)
Q Consensus 1 ~~~~vViD~Gs~~~k~G~ag~~~P~~~--------~ps~~~~~~~~~~~~~g~~~~~~~~~d~~~--~~~---------- 60 (434)
|+.+|-||+|+.++.+++..+..|..+ +||+++...++ ..++|..+......++.+ +.+
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~-~~~vG~~A~~~~~~~p~~t~~~~Kr~iG~~~~d 79 (605)
T 2kho_A 1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDG-ETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQD 79 (605)
T ss_dssp ---CEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECEEEECTTS-CEEESHHHHTTTTTCGGGEEECGGGTTTCBSSS
T ss_pred CCCEEEEEcCCcCEEEEEEECCEEEEEECCCCCcccceEEEEECCC-cEEECHHHHHHhhhCCCCEeehhhHhhCCCCCc
Confidence 778899999999999998865555444 68888764432 345777654110011110 000
Q ss_pred --------ecccC-------------CCcccCh-HHHHHHHHHHhh---ccCCCCCCCCcEEEeccCCCCHHHHHHHHHH
Q 013888 61 --------RRPID-------------RGYLINS-DLQRDIWAHLFS---SLLHISPSASSLLLTEPLFALPSIQRATDEL 115 (434)
Q Consensus 61 --------~~p~~-------------~g~i~~~-d~~e~il~~~~~---~~L~~~~~~~~vll~e~~~~~~~~re~l~e~ 115 (434)
.+|+. .|..... +....+|+++.. .+++. .-..++++.|.++....|+.+.+.
T Consensus 80 ~~v~~~~~~~p~~~~~~~~g~~~i~~~g~~~~~~ei~a~~L~~l~~~ae~~l~~--~v~~~VitVPa~f~d~qr~a~~~A 157 (605)
T 2kho_A 80 EEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGE--PVTEAVITVPAYFNDAQRQATKDA 157 (605)
T ss_dssp TTHHHHHHHCSSCEEECTTSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHCS--CCCEEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHHHhhcCCeEEEECCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCC--CCcEEEEEECCCCCHHHHHHHHHH
Confidence 02322 2322222 223344444432 23432 235788999999999988888665
Q ss_pred HhhhcCCceeeeccccccccccccccCCCCCCC--CCCcEEEEecCCCceEEEeccC------cee-cccccEEecccHH
Q 013888 116 VFEDFNFKSLFVADPPSLVHLYEASRRPYGLLS--ETQCSLVVDCGFSFTHAAPVFQ------NFT-VNYAVKRIDLGGK 186 (434)
Q Consensus 116 lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~--~~~tglVVDiG~~~t~v~pV~d------G~~-~~~~~~~~~~GG~ 186 (434)
.+..|+..+.++++|.+|++ ++|+.. ...+.+|+|+|+++++|+.+.- |.. +..+....++||+
T Consensus 158 -~~~AGl~v~~li~EP~AAAl------ay~l~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~g~~~v~a~~gd~~lGG~ 230 (605)
T 2kho_A 158 -GRIAGLEVKRIINEPTAAAL------AYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGE 230 (605)
T ss_dssp -HHTTTCEEEEEEEHHHHHHH------HTTTTSSSSEEEEEEEEECSSCEEEEEEEEECTTTSCEEEEEEEEEESSCSGG
T ss_pred -HHHcCCceEEEecCHHHHHH------HhhhcccCCCCEEEEEECCCCeEEEEEEEEEecCCCCeEEEEEECCCCCccHH
Confidence 57789999999999999998 544322 1345799999999999988763 432 2222334689999
Q ss_pred HHHHHHHHHHhhc-----CCCCCChH-------HHHHHHHhhcccccccHHHHHHHHHhcCCCCceeEeeeCCCCccccc
Q 013888 187 ALTNYLKELVSYR-----AINVMDET-------FIIDDVKEKLCFVSLDVARDLQIARKRGKDNLLRCTYVLPDGVTHTK 254 (434)
Q Consensus 187 ~l~~~l~~ll~~~-----~~~~~~~~-------~~~~~iKe~~c~v~~~~~~~~~~~~~~~~~~~~~~~~~lpd~~~~~~ 254 (434)
++++.|.+.+..+ +.++..+. ..++.+|+.++... ...+.+|.......
T Consensus 231 d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~~K~~ls~~~-------------------~~~i~l~~~~~~~~ 291 (605)
T 2kho_A 231 DFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQ-------------------QTDVNLPYITADAT 291 (605)
T ss_dssp GTHHHHHHHHHHHHHHHHSCCSTTCHHHHHHHHHHHHHHHHHTTSSS-------------------EEEEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHcCCCC-------------------ceEEEecccccCCC
Confidence 9999998877543 23332221 22333443332210 11222221000000
Q ss_pred ccccChhhHhhhhccCCCCCCCCCccccccchhHHHHHHHhhhhccCCccEEEccCccccCCccccCCCCCCCCCCCHHH
Q 013888 255 GFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLVPEMIFQPADLGMNQAGLAE 334 (434)
Q Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~er~~~~E~lF~p~~~~~~~~~l~~ 334 (434)
+ . ....+.|..+.| |-++.|-. ..+.+
T Consensus 292 G---------------------------~------------------~~~~~~itr~~f---e~l~~~~~-----~~i~~ 318 (605)
T 2kho_A 292 G---------------------------P------------------KHMNIKVTRAKL---ESLVEDLV-----NRSIE 318 (605)
T ss_dssp E---------------------------E------------------EEEEEEEEHHHH---HTTCCSTT-----GGGTS
T ss_pred C---------------------------c------------------eEEEEEEeHHHH---HHHHHHHH-----HHHHH
Confidence 0 0 000234443333 22344421 24667
Q ss_pred HHHHHHHhcChhhHHHhHcCeEEecCCCCCcChHHHHHHhhcccCCCCceEEEecCCCCCccccchhhhhcCc
Q 013888 335 CIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLASS 407 (434)
Q Consensus 335 ~I~~~i~~~~~d~r~~l~~nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasila~l 407 (434)
.|.++|..+... ..-...|+|+||+|.+|++.++|++.+.. .+....+|..+++.||+++|..
T Consensus 319 ~i~~~L~~a~~~--~~~i~~VvLvGG~srip~v~~~l~~~fg~--------~~~~~~npd~aVA~GAa~~a~~ 381 (605)
T 2kho_A 319 PLKVALQDAGLS--VSDIDDVILVGGQTRMPMVQKKVAEFFGK--------EPRKDVNPDEAVAIGAAVQGGV 381 (605)
T ss_dssp HHHHHHHTTTCC--TTTCSEEEEESGGGGSHHHHHHHHHHHSS--------CCBCSSCTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCC--hhhCceEEEECCcccChHHHHHHHHhcCC--------CcCcCCCcchHHHHHHHHHHHH
Confidence 788888776432 23357999999999999999999998842 1334568899999999999853
No 16
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=99.48 E-value=2.5e-13 Score=142.65 Aligned_cols=312 Identities=10% Similarity=0.101 Sum_probs=179.8
Q ss_pred CCCeEEEEcCCcceEEeecCCCCCC--------eeeecCceeeCCCCceecCcccccc------------------cccc
Q 013888 1 MSNIVVLDNGGGLIKAGHGGERDPA--------VTIPNCMYRPLSSKKFIHPSPTAAS------------------ATED 54 (434)
Q Consensus 1 ~~~~vViD~Gs~~~k~G~ag~~~P~--------~~~ps~~~~~~~~~~~~~g~~~~~~------------------~~~d 54 (434)
|-.+|-||+|+.++.+++.....|. ..+||+++...+ ..++|+.+... ...|
T Consensus 1 Mm~~iGIDlGTtns~va~~~~g~~~ii~n~~g~r~tPS~Vaf~~~--~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d 78 (675)
T 3d2f_A 1 MSTPFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPK--NRYLGETGKNKQTSNIKNTVANLKRIIGLDYHH 78 (675)
T ss_dssp -CCCEEEECCSSEEEEEEEETTEEEEECCTTSCSSEECCEEECSS--SEEETHHHHHHHTTCGGGEECCHHHHTTCBTTC
T ss_pred CCcEEEEEcCCCcEEEEEEECCeeEEEECCCCCcccceEEEECCC--cEEecHHHHHhhhhChHhHHHHHHHHhCCCCCc
Confidence 6668999999999999987544333 235888876543 35678766310 0000
Q ss_pred cc--------cceeecccCCCcc------------cC-hHHHHHHHHHHhh---ccCCCCCCCCcEEEeccCCCCHHHHH
Q 013888 55 LT--------SAAVRRPIDRGYL------------IN-SDLQRDIWAHLFS---SLLHISPSASSLLLTEPLFALPSIQR 110 (434)
Q Consensus 55 ~~--------~~~~~~p~~~g~i------------~~-~d~~e~il~~~~~---~~L~~~~~~~~vll~e~~~~~~~~re 110 (434)
.. .+.+ .+..+|.+ .. .+....+|.++.. .+++. .-..++++.|.+++...|+
T Consensus 79 ~~v~~~~~~~p~~v-~~~~~g~~~~~~~~~g~~~~~speei~a~~L~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR~ 155 (675)
T 3d2f_A 79 PDFEQESKHFTSKL-VELDDKKTGAEVRFAGEKHVFSATQLAAMFIDKVKDTVKQDTKA--NITDVCIAVPPWYTEEQRY 155 (675)
T ss_dssp TTHHHHHTTCCSEE-EECTTSBEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHCS--CCCEEEEEECTTCCHHHHH
T ss_pred HHHHHHHhhCCeeE-EEcCCCceEEEEEeCCCCceEcHHHHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHH
Confidence 00 0001 11123321 11 1233344444432 23442 2257899999999999888
Q ss_pred HHHHHHhhhcCCceeeeccccccccccccccCCCCCC---CCCCcEEEEecCCCceEEEecc--Ccee-cccccEEeccc
Q 013888 111 ATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLL---SETQCSLVVDCGFSFTHAAPVF--QNFT-VNYAVKRIDLG 184 (434)
Q Consensus 111 ~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~---~~~~tglVVDiG~~~t~v~pV~--dG~~-~~~~~~~~~~G 184 (434)
.+.+ ..+..|+..+.++++|.++++.+..... ++. ....+.+|+|+|+++++|+.+. +|.. +..+....++|
T Consensus 156 a~~~-Aa~~AGl~~~~li~EP~AAAlaygl~~~-~~~~~~~~~~~vlV~DlGGGT~Dvsv~~~~~g~~~V~a~~gd~~lG 233 (675)
T 3d2f_A 156 NIAD-AARIAGLNPVRIVNDVTAAGVSYGIFKT-DLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFG 233 (675)
T ss_dssp HHHH-HHHHTTCEEEEEEEHHHHHHHHHHHHCS-CCCCSSSCCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCS
T ss_pred HHHH-HHHHcCCceEEEEcchHHHHHHHhhhcc-ccccccCCCcEEEEEEcCCCcEEEEEEEecCCeEEEEEEcCCCCcc
Confidence 8866 4578899999999999999983311000 000 1135679999999999998875 6654 33333457899
Q ss_pred HHHHHHHHHHHHhhc-----CCCCCChH-------HHHHHHHhhcccccccHHHHHHHHHhcCCCCceeEeeeCCCCccc
Q 013888 185 GKALTNYLKELVSYR-----AINVMDET-------FIIDDVKEKLCFVSLDVARDLQIARKRGKDNLLRCTYVLPDGVTH 252 (434)
Q Consensus 185 G~~l~~~l~~ll~~~-----~~~~~~~~-------~~~~~iKe~~c~v~~~~~~~~~~~~~~~~~~~~~~~~~lpd~~~~ 252 (434)
|+++++.|.+.+..+ +.++..+. ..++.+|+.++.. ....+.+|....
T Consensus 234 G~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~rL~~~aE~aK~~Ls~~-------------------~~~~i~i~~~~~- 293 (675)
T 3d2f_A 234 GRDFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSAN-------------------TNAPFSVESVMN- 293 (675)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCGGGCHHHHHHHHHHHHHHHHHHHHC-------------------SEEEEEETTSSS-
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhcCcC-------------------CceEEEEeeecc-
Confidence 999999998877531 22222111 2233334332210 011222221000
Q ss_pred ccccccChhhHhhhhccCCCCCCCCCccccccchhHHHHHHHhhhhccCCccEEEccCcccc-CCccccCCCCCCCCCCC
Q 013888 253 TKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFL-VPEMIFQPADLGMNQAG 331 (434)
Q Consensus 253 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~er~~-~~E~lF~p~~~~~~~~~ 331 (434)
+....+.|..+.|. ..+.+|+ .
T Consensus 294 ------------------------------------------------g~~~~~~itr~~fe~l~~~l~~---------~ 316 (675)
T 3d2f_A 294 ------------------------------------------------DVDVSSQLSREELEELVKPLLE---------R 316 (675)
T ss_dssp ------------------------------------------------SCCEEEEEEHHHHHHHTHHHHT---------T
T ss_pred ------------------------------------------------CceEEEEEeHHHHHHHHHHHHH---------H
Confidence 00002333332221 1112222 3
Q ss_pred HHHHHHHHHHhcChhhHHHhHcCeEEecCCCCCcChHHHHHHhhcccCCCCceEEEecCCCCCccccchhhhhcC
Q 013888 332 LAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLAS 406 (434)
Q Consensus 332 l~~~I~~~i~~~~~d~r~~l~~nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasila~ 406 (434)
+.+.|.+++...... ..-...|+|+||+|.+|++.++|++.+.. .+....+|..+++.||+++|.
T Consensus 317 i~~~i~~~L~~a~l~--~~~I~~VvLvGGssriP~v~~~l~~~fg~--------~~~~~~nPdeaVA~GAa~~a~ 381 (675)
T 3d2f_A 317 VTEPVTKALAQAKLS--AEEVDFVEIIGGTTRIPTLKQSISEAFGK--------PLSTTLNQDEAIAKGAAFICA 381 (675)
T ss_dssp TTHHHHHHHHHHTCC--GGGCCEEEEESGGGGSHHHHHHHHHHHTS--------CEECCSCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--hhhCcEEEEECCCccChHHHHHHHHhcCC--------CccccCCcchHHHHHHHHHHH
Confidence 556677777665321 12257999999999999999999998842 234566889999999998874
No 17
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=99.45 E-value=1.1e-13 Score=137.75 Aligned_cols=121 Identities=17% Similarity=0.112 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhh---ccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCCCC
Q 013888 73 DLQRDIWAHLFS---SLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSE 149 (434)
Q Consensus 73 d~~e~il~~~~~---~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~ 149 (434)
+....+++++.. ..++ .....++++.|..+....|+.+.+ ..+..|+..+.++.+|.++++++..... ....
T Consensus 129 ev~~~~L~~l~~~a~~~~~--~~~~~~vitvPa~~~~~~r~~~~~-a~~~AGl~~~~li~Ep~AAa~~~~~~~~--~~~~ 203 (409)
T 4gni_A 129 EIATRYLRRLVGAASEYLG--KKVTSAVITIPTNFTEKQKAALIA-AAAAADLEVLQLISEPAAAVLAYDARPE--ATIS 203 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHT--SCCCEEEEEECTTCCHHHHHHHHH-HHHHTTCEEEEEEEHHHHHHHHTTC--------C
T ss_pred HHHHHHHHHHHHHHHHHhC--CCCCeEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEEEcCHHHHHHHHhcccc--cCCC
Confidence 344555555543 2233 344679999999999988887654 4577899999999999999994321100 0012
Q ss_pred CCcEEEEecCCCceEEEec--cCceec-ccccEEecccHHHHHHHHHHHHhh
Q 013888 150 TQCSLVVDCGFSFTHAAPV--FQNFTV-NYAVKRIDLGGKALTNYLKELVSY 198 (434)
Q Consensus 150 ~~tglVVDiG~~~t~v~pV--~dG~~~-~~~~~~~~~GG~~l~~~l~~ll~~ 198 (434)
..+.+|+|+|.++|+++-+ .+|..- .......++||.++++.|.+.+..
T Consensus 204 ~~~vlv~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~i~~~l~~ 255 (409)
T 4gni_A 204 DKIIVVADLGGSRSDVTVLASRSGMYTILATVHDYEYHGIALDKVLIDHFSK 255 (409)
T ss_dssp CEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEESSSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCceEEEEEEEeCCeEEEEEecCCCCcCHHHHHHHHHHHHHH
Confidence 3467999999999999875 233211 112234799999999999887754
No 18
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=99.43 E-value=8.8e-13 Score=128.00 Aligned_cols=176 Identities=18% Similarity=0.120 Sum_probs=122.6
Q ss_pred eEEEEcCCcceEEeecCCCCCCeeeecCceeeCCC----------------------CceecCcccccccccccccceee
Q 013888 4 IVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSS----------------------KKFIHPSPTAASATEDLTSAAVR 61 (434)
Q Consensus 4 ~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~----------------------~~~~~g~~~~~~~~~d~~~~~~~ 61 (434)
.|-||+|+.++|+-. ++. -...+||.++..... +.+.+|+++.
T Consensus 23 ~igiDlG~~~tkv~~-~~g-~~~~~PSvva~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~vG~~A~------------- 87 (346)
T 2fsj_A 23 VVGLDVGYGDTKVIG-VDG-KRIIFPSRWAVTETESWGIGGKIPVLSTDGGQTKFIYGKYASGNNIR------------- 87 (346)
T ss_dssp EEEEEECSSEEEEEC-GGG-CEEEEESCEEEECCSCC----CCCCBBSSTTSSEEEEGGGCCSSCCB-------------
T ss_pred EEEEecCCcceeEEe-cCC-CEEEecceeeeccccccCcCcceEEEEecccccccCCcEEEEcccee-------------
Confidence 478999999999854 432 256789999865432 2344554442
Q ss_pred cccCCCcccChHHHHHHHHHHhhccC-CCCCCCCcEE--EeccCCCCHHHHHHHHHHHhhh-------------cCCcee
Q 013888 62 RPIDRGYLINSDLQRDIWAHLFSSLL-HISPSASSLL--LTEPLFALPSIQRATDELVFED-------------FNFKSL 125 (434)
Q Consensus 62 ~p~~~g~i~~~d~~e~il~~~~~~~L-~~~~~~~~vl--l~e~~~~~~~~re~l~e~lfE~-------------~~~~~v 125 (434)
+|++.|.+.+ +..+.++.+.+.+.. .-......++ ++.|.......|+.+.+.+... +++..+
T Consensus 88 ~~l~~~~~~~-~~~~~ll~~~l~~~~~~~~~~~~~vvL~i~vP~~~~~~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~v 166 (346)
T 2fsj_A 88 VPQGDGRLAS-KEAFPLIAAALWESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRL 166 (346)
T ss_dssp CCSSTTCTTS-TTTHHHHHHHHHHHCCCC---CEEEEEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEE
T ss_pred cccCCCcccC-hhHHHHHHHHHHHhhhccCCCceEEEEcccCCHHHHHHHHHHHHHHHcCCCcEEEeCCCceEEEEEEEE
Confidence 7899999888 777777777776543 1112234588 8888877777788787765442 235778
Q ss_pred eeccccccccccccccCCCCCCCC--CCcEEEEecCCCceEEEecc--CceecccccEEecccHHHHHHHHHHHHhhc
Q 013888 126 FVADPPSLVHLYEASRRPYGLLSE--TQCSLVVDCGFSFTHAAPVF--QNFTVNYAVKRIDLGGKALTNYLKELVSYR 199 (434)
Q Consensus 126 ~~~~~~~ls~~~~~~~~~~g~~~~--~~tglVVDiG~~~t~v~pV~--dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~ 199 (434)
.++++|.+|++.... +.... ..+-+|||+|+++|+++-+. +|.++......+++||+++++.+.+.++++
T Consensus 167 ~li~Ep~AAa~~~l~----~~~~~~~~~~vlVvDIGgGTtDv~vi~~~~g~~v~~~s~~~~lGg~~i~~~I~~~i~~~ 240 (346)
T 2fsj_A 167 IMRPQGVGAALYLLN----QGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEPVVELSFSLQIGVGDAISALSRKIAKE 240 (346)
T ss_dssp EEEETTHHHHHHHHH----HTSSCCCSSEEEEEEECSSCEEEEEEETTTTEECGGGCEEESCCHHHHHHHHHHHHHHH
T ss_pred EEEccHHHHHHHhhc----cccccccCCcEEEEECCCCcEEEEEEEecCCEEEeecCCCcchhHHHHHHHHHHHHHHH
Confidence 999999999984211 10011 23459999999999999998 787766656788999999999888776543
No 19
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=99.37 E-value=1.3e-11 Score=128.50 Aligned_cols=188 Identities=17% Similarity=0.181 Sum_probs=116.5
Q ss_pred CCCeEEEEcCCcceEEeecCCCCCC--------eeeecCceeeCCCCceecCccccccccccccc--ceeec--------
Q 013888 1 MSNIVVLDNGGGLIKAGHGGERDPA--------VTIPNCMYRPLSSKKFIHPSPTAASATEDLTS--AAVRR-------- 62 (434)
Q Consensus 1 ~~~~vViD~Gs~~~k~G~ag~~~P~--------~~~ps~~~~~~~~~~~~~g~~~~~~~~~d~~~--~~~~~-------- 62 (434)
|+.+|-||+|+.++.+++..+..|. ..+||+++...+. ..++|..+......++.+ +.+++
T Consensus 1 M~~viGIDlGTT~S~Va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~-~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d 79 (605)
T 4b9q_A 1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDG-CTLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQD 79 (605)
T ss_dssp -CCEEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECCEEECTTS-CEEESHHHHHTTTTCGGGEECCGGGTTTCBTTS
T ss_pred CCcEEEEEcCCCcEEEEEEECCEEEEEECCCCCcccceEEEEeCCC-cEEecHHHHHHHHhCCCcEehhhHHhhCCCCCC
Confidence 8899999999999999987443332 3458888865432 345676654110011000 11111
Q ss_pred ----------cc-----C--------CCcccCh-HHHHHHHHHHhh---ccCCCCCCCCcEEEeccCCCCHHHHHHHHHH
Q 013888 63 ----------PI-----D--------RGYLINS-DLQRDIWAHLFS---SLLHISPSASSLLLTEPLFALPSIQRATDEL 115 (434)
Q Consensus 63 ----------p~-----~--------~g~i~~~-d~~e~il~~~~~---~~L~~~~~~~~vll~e~~~~~~~~re~l~e~ 115 (434)
|+ . .|..... +....+|.++.. .+|+. .-..++++.|.++....|+.+. -
T Consensus 80 ~~v~~~~~~~p~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qr~a~~-~ 156 (605)
T 4b9q_A 80 EEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGE--PVTEAVITVPAYFNDAQRQATK-D 156 (605)
T ss_dssp HHHHHHHTTCSSEEEECTTSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHTS--CCCEEEEEECTTCCHHHHHHHH-H
T ss_pred HHHHHHhhcCCeEEEEcCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHHHHHH-H
Confidence 11 0 1111222 333445555442 23443 2357899999999999887764 4
Q ss_pred HhhhcCCceeeeccccccccccccccCCCCCCC--CCCcEEEEecCCCceEEEeccCce----e---cccccEEecccHH
Q 013888 116 VFEDFNFKSLFVADPPSLVHLYEASRRPYGLLS--ETQCSLVVDCGFSFTHAAPVFQNF----T---VNYAVKRIDLGGK 186 (434)
Q Consensus 116 lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~--~~~tglVVDiG~~~t~v~pV~dG~----~---~~~~~~~~~~GG~ 186 (434)
..+..|++.+.++++|.+|+++ +|+.. ...+-+|+|+|+++++++-+.-+. . +..+....++||.
T Consensus 157 Aa~~AGl~v~~li~EP~AAAla------ygl~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~~~~evla~~gd~~lGG~ 230 (605)
T 4b9q_A 157 AGRIAGLEVKRIINEPTAAALA------YGLDKGTGNRTIAVYDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGE 230 (605)
T ss_dssp HHHHTTCEEEEEEEHHHHHHHH------HHTTSCCSSEEEEEEEECSSCEEEEEEEEEESSSCEEEEEEEEEEETTCSHH
T ss_pred HHHHcCCceEEEeCcHHHHHHH------hhhhccCCCCEEEEEECCCCeEEEEEEEEecCCCCceEEEEEecCCCCcChH
Confidence 5677899999999999999983 33221 134568999999999998776433 1 1112233588999
Q ss_pred HHHHHHHHHHhh
Q 013888 187 ALTNYLKELVSY 198 (434)
Q Consensus 187 ~l~~~l~~ll~~ 198 (434)
++++.|.+.+..
T Consensus 231 d~D~~l~~~l~~ 242 (605)
T 4b9q_A 231 DFDSRLINYLVE 242 (605)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988877753
No 20
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=99.35 E-value=9.3e-12 Score=122.34 Aligned_cols=176 Identities=16% Similarity=0.154 Sum_probs=107.3
Q ss_pred HHHHHHHHhhhcCCceeeeccccccccccccccCCCCCC--CCC-CcEEEEecCCCceEEEeccCceecccccEEecccH
Q 013888 109 QRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLL--SET-QCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGG 185 (434)
Q Consensus 109 re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~--~~~-~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG 185 (434)
.+.+ .-+++..|+.-..+..+|+++++ ++|.. ... ...+|||+|+++|+++.+.+|.++. ...+++||
T Consensus 153 v~~~-~~~~~~aGl~~~~i~~ep~Aaa~------~~~~~~~~~~~~~~~vvDiGggttdi~i~~~g~~~~--~~~~~~GG 223 (377)
T 2ych_A 153 VAGV-LEALRGAGLVPVVLDVKPFAGLY------PLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPLA--VRVLTLSG 223 (377)
T ss_dssp HHHH-HHHHHHTTCEEEEEEEHHHHTTG------GGHHHHHTSTTCEEEEEEECSSCEEEEEEETTEEEE--EEEESCSH
T ss_pred HHHH-HHHHHHCCCceEEEecchHHHHH------HHHhhcccccCCeEEEEEECCCcEEEEEEECCEEEE--EEeeechH
Confidence 3444 33458889999999999999888 32200 012 3458999999999999999999875 45689999
Q ss_pred HHHHHHHHHHHhhcCCCCCChHHHHHHHHhhcccccccHHHHHHHHHhcCCCCceeEeeeCCCCcccccccccChhhHhh
Q 013888 186 KALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQR 265 (434)
Q Consensus 186 ~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~c~v~~~~~~~~~~~~~~~~~~~~~~~~~lpd~~~~~~~~i~~~~~~~~ 265 (434)
+++++.+.+.+. .+...++++|+++++...+...+. ..+.+|+.
T Consensus 224 ~~i~~~i~~~~~-------~~~~~aE~~K~~~~~~~~~~~~~~-------------~~i~~~~~---------------- 267 (377)
T 2ych_A 224 KDFTEAIARSFN-------LDLLAAEEVKRTYGMATLPTEDEE-------------LLLDFDAE---------------- 267 (377)
T ss_dssp HHHHHHHHHHTT-------CCHHHHHHHHHHTC-----------------------------------------------
T ss_pred HHHHHHHHHHhC-------CCHHHHHHHHhhcccccccccccc-------------cccccccc----------------
Confidence 999999887431 235668999998876543211100 00111110
Q ss_pred hhccCCCCCCCCCccccccchhHHHHHHHhhhhccCCccEEEccCccccCCccccCCCCCCCCCCCHHHHHHHHHHhcCh
Q 013888 266 YLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHP 345 (434)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~er~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~ 345 (434)
.+.++.+.+ .|+ ..|. ...+.+.|.++|..++.
T Consensus 268 ---------------------------------------~~~i~~~~~--~~~-i~~~-----~~~i~~~i~~~l~~~~~ 300 (377)
T 2ych_A 268 ---------------------------------------RERYSPGRI--YDA-IRPV-----LVELTQELRRSLEFFRI 300 (377)
T ss_dssp ----------------------------------------------CH--HHH-HHHH-----HHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------cccCCHHHH--HHH-HHHH-----HHHHHHHHHHHHHHHHh
Confidence 011111100 000 0110 01366677777776655
Q ss_pred hhHHHhHcCeEEecCCCCCcChHHHHHHhhc
Q 013888 346 YLHSVLYESIILTGGSTLFPRFAERLERELR 376 (434)
Q Consensus 346 d~r~~l~~nIiltGG~s~~~G~~~RL~~eL~ 376 (434)
..+....++|+||||+|.+||+.++|++++.
T Consensus 301 ~~~~~~~~~IvL~GG~s~~p~l~~~l~~~l~ 331 (377)
T 2ych_A 301 QLEEASPEVGYLLGGGSKLRGLASLLTDTLG 331 (377)
T ss_dssp HC---CCSEEEEESGGGGSTTHHHHHHHHHT
T ss_pred ccCCCCcCEEEEECccccchhHHHHHHHHhC
Confidence 5566678899999999999999999999995
No 21
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Probab=99.19 E-value=3.6e-11 Score=115.77 Aligned_cols=175 Identities=14% Similarity=0.068 Sum_probs=108.0
Q ss_pred eEEEEcCCcceEEeec--C---CCCCCeeeecCceeeCC---------------CCceecCcccccccccccccceeecc
Q 013888 4 IVVLDNGGGLIKAGHG--G---ERDPAVTIPNCMYRPLS---------------SKKFIHPSPTAASATEDLTSAAVRRP 63 (434)
Q Consensus 4 ~vViD~Gs~~~k~G~a--g---~~~P~~~~ps~~~~~~~---------------~~~~~~g~~~~~~~~~d~~~~~~~~p 63 (434)
.|-||+|-+++|+-.. | +..-+..|||.++.... ++.|++|+.+. .. -
T Consensus 9 iigiD~G~~~~K~~~~~~~g~~~~~~~~~FpS~v~~~~~~~~~~~~~~~~v~~~G~~Y~vG~~a~--~~----------~ 76 (329)
T 4apw_A 9 VMTLDAGKYETKLIGKNKKGTTEDIKRVIFKTKIYNLEDGYIDIEGNSHKIELDGKEYLIGEQGV--ED----------S 76 (329)
T ss_dssp EEEEEECSSEEEEEEHHHHHHCCSSTTEEEESCCEECCEESCCCCCSCEEEECSSSEEEESCCSS--SC----------S
T ss_pred EEEEecCCceEEEEeccCCCcccceeEEeecccccccccccccCCCCceEEEECCEEEEeCcccc--cc----------c
Confidence 4779999999998653 2 12234679998864321 23456666543 10 0
Q ss_pred cCCCcccChHHHHHHHHHHhhccCCCC-CCCCcEEEeccCCCCH--HHHHHHHHHHhh-------------hcCCceeee
Q 013888 64 IDRGYLINSDLQRDIWAHLFSSLLHIS-PSASSLLLTEPLFALP--SIQRATDELVFE-------------DFNFKSLFV 127 (434)
Q Consensus 64 ~~~g~i~~~d~~e~il~~~~~~~L~~~-~~~~~vll~e~~~~~~--~~re~l~e~lfE-------------~~~~~~v~~ 127 (434)
.+... +-+...-++..++.+.+... ..+-.+++.-|...-. ..|+.+.+.+-. .+.+..+.+
T Consensus 77 ~~~~k--~~~~~~~L~l~Aia~~~~~~~~~~v~lv~gLP~~~~~~~~~k~~~~~~l~~~~~v~~~~~g~~~~i~I~~v~v 154 (329)
T 4apw_A 77 SETSK--TNLIHKLAAYTAITQVLDSNKNNKVQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITI 154 (329)
T ss_dssp GGGCC--CTTHHHHHHHHHHHTTCCSSSEEEEEEEEEECGGGTTSSTTTTHHHHHHSSCEEECSSTTCCCEEEEEEEEEE
T ss_pred ccCCc--CchhHHHHHHHHHHHHhccccCceEEEEEcCCHHHhcchhHHHHHHHHhcCCceEEEEECCEEEEEEEeEEEE
Confidence 11111 12234445556654444332 1223455555543322 234555555442 133567888
Q ss_pred ccccccccccccccCCCCCCCCCCcEEEEecCCCceEEEeccCceecccccEEecccHHHHHHHHHHHHhh
Q 013888 128 ADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSY 198 (434)
Q Consensus 128 ~~~~~ls~~~~~~~~~~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~ 198 (434)
.|+++.+++.... .....+.+|||||+++|+++.+.+|.++......+++||+.+++.+.+.|..
T Consensus 155 ~pe~~ga~~~~~~------~~~~~~v~vvDiGggTtd~~v~~~g~~~~~~~~~~~~G~~~~~~~i~~~l~~ 219 (329)
T 4apw_A 155 KAEGSGVLFLEQE------NFKNKNVAVIDFGGLNMGFSLYRNCVVNPSERFIEEHGVKDLIIRVGDALTD 219 (329)
T ss_dssp EEHHHHHHHHSCC------CCTTCEEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHTSSSS
T ss_pred EeccHHHHhhcch------hhccCCEEEEEeCCCcEEEEEEECCEEeeccccchhhHHHHHHHHHHHHHHh
Confidence 9999999884211 1123566899999999999999999998776778999999999999887765
No 22
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A
Probab=99.07 E-value=5.6e-10 Score=107.11 Aligned_cols=92 Identities=16% Similarity=0.236 Sum_probs=64.7
Q ss_pred hhcCCceeeeccccccccccccccCCCCCCCCCCcEEEEecCCCceEEEeccCcee-cccccEEecccHHHHHHHHHHHH
Q 013888 118 EDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFT-VNYAVKRIDLGGKALTNYLKELV 196 (434)
Q Consensus 118 E~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~~tglVVDiG~~~t~v~pV~dG~~-~~~~~~~~~~GG~~l~~~l~~ll 196 (434)
+.+++..+.+.++++++++..... . ......+|||+|+++|+++.+.+|.+ +.......++||.++++.+.+.+
T Consensus 136 ~~~~i~~v~~~~e~~aa~~~~~~~--~---~~~~~~~vvDiGggttd~~v~~~g~~~v~~~~~~~~lGg~~~~~~I~~~l 210 (320)
T 2zgy_A 136 DTFTIKDVKVMPESIPAGYEVLQE--L---DELDSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDAL 210 (320)
T ss_dssp CCCEEEEEEEEESSHHHHHHHHHH--S---CTTCEEEEEEECSSCEEEEEEEGGGCCEEEEEEECSCCTHHHHHHHHHHT
T ss_pred cEEEEEEEEEecCcHHHHHhhhcc--c---cCCCCEEEEEcCCCeEEEEEEeCCeeEEeeecCCccccHHHHHHHHHHHH
Confidence 345667889999999998833210 0 01346799999999999999999876 44445667999999999999988
Q ss_pred hhcCCCCCChHHHHHHH-Hhh
Q 013888 197 SYRAINVMDETFIIDDV-KEK 216 (434)
Q Consensus 197 ~~~~~~~~~~~~~~~~i-Ke~ 216 (434)
.+++ ...+...++++ |..
T Consensus 211 ~~~~--~~i~~~~ae~~lk~~ 229 (320)
T 2zgy_A 211 SLAR--TKGSSYLADDIIIHR 229 (320)
T ss_dssp TCCS--BGGGHHHHHHHHHTT
T ss_pred HHcC--CCCCHHHHHHHHHHh
Confidence 6542 22234445555 443
No 23
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}
Probab=99.06 E-value=3e-10 Score=110.32 Aligned_cols=181 Identities=14% Similarity=0.101 Sum_probs=109.0
Q ss_pred CeEEEEcCCcceEEeecCCCCCCeeeecCceeeCC-----------------------CCc-eecCcccccccccccccc
Q 013888 3 NIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLS-----------------------SKK-FIHPSPTAASATEDLTSA 58 (434)
Q Consensus 3 ~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~-----------------------~~~-~~~g~~~~~~~~~d~~~~ 58 (434)
-.|-||+|-.++|+ ..++ . ...|||.++.... ... |++|+.+. ... .
T Consensus 5 ~iigiD~G~~~~K~-~~~~-~-~~~fPS~v~~~~~~~~~l~~~~~~~~~~~~v~v~~~~~~~y~vG~~A~--~~~----~ 75 (355)
T 3js6_A 5 YVMALDFGNGFVKG-KIND-E-KFVIPSRIGRKTNENNQLKGFVDNKLDVSEFIINGNNDEVLLFGNDLD--KTT----N 75 (355)
T ss_dssp EEEEEEECSSEEEE-EETT-E-EEEEESEEEECCSSCCSSTTTSCCCCSCEEEEETTCTTCCEEESTTHH--HHC----S
T ss_pred EEEEEEcCCCcEEE-ecCC-e-EEEeceeeeecccCcccccccccCCCCceEEEEecCCeEEEEEchhhh--hcC----c
Confidence 35779999999996 4444 3 4788998764211 123 45555443 110 0
Q ss_pred eeeccc-CCCcccChHHHHHHHHHHhhc---cCCCCCCCCcEEEeccCCCCHHHH-HHHHHHHhhh-----------cCC
Q 013888 59 AVRRPI-DRGYLINSDLQRDIWAHLFSS---LLHISPSASSLLLTEPLFALPSIQ-RATDELVFED-----------FNF 122 (434)
Q Consensus 59 ~~~~p~-~~g~i~~~d~~e~il~~~~~~---~L~~~~~~~~vll~e~~~~~~~~r-e~l~e~lfE~-----------~~~ 122 (434)
...+.. .+....+.+ ...++..++.. .+.-+..+-.|++..|.-.....| +++.+.+... +.+
T Consensus 76 ~~~~~~~~~~k~~~~~-~~iL~l~Ala~~~~~~~~~~~~~~lvvGLP~~~~~~~k~~~l~~~l~~~~~v~~~g~~~~i~I 154 (355)
T 3js6_A 76 TGKDTASTNDRYDIKS-FKDLVECSIGLLAREVPEEVVNVVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINV 154 (355)
T ss_dssp CCEECCCSTTGGGSHH-HHHHHHHHHHHHHTTSCSSEEEEEEEEEECGGGTTSHHHHHHHHHHSSCEEEEETTEEEEEEE
T ss_pred ccccccccCCcccCHH-HHHHHHHHHHHHHHhccCCCceEEEEEeCCHHHHhHHHHHHHHHHhCCCeEEEECCEEEEEEE
Confidence 011222 233333322 22333333321 111011123566666665554444 4666666532 234
Q ss_pred ceeeeccccccccccccccCCCCCCC-------CCCcEEEEecCCCceEEEeccCceecccccEEecccHHHHHHHHHHH
Q 013888 123 KSLFVADPPSLVHLYEASRRPYGLLS-------ETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKEL 195 (434)
Q Consensus 123 ~~v~~~~~~~ls~~~~~~~~~~g~~~-------~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~l 195 (434)
..+.+.+++++|+++ .+... .....+|||+|+.+|.++.+.+|.++......+++||..+++.+.+.
T Consensus 155 ~~V~v~pE~~~a~~~------~~~~~~~~~~~~~~~~~~vvDiGggTtd~~v~~~~~~~~~~s~s~~~G~~~~~~~i~~~ 228 (355)
T 3js6_A 155 KGVKIVAQPMGTLLD------LNMENGKVFKAFTEGKYSVLDFGSGTTIIDTYQNMKRVEEESFVINKGTIDFYKRIASH 228 (355)
T ss_dssp EEEEEEEHHHHHHHH------TTEETTEECHHHHTCEEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHH
T ss_pred EEEEEEeCcHHHHHH------HHHccCccccccccCcEEEEEeCCCcEEEEEEcCCEEccccccCcchHHHHHHHHHHHH
Confidence 689999999999993 22111 14456899999999999999999998887788999999999999999
Q ss_pred Hhhc
Q 013888 196 VSYR 199 (434)
Q Consensus 196 l~~~ 199 (434)
+.++
T Consensus 229 l~~~ 232 (355)
T 3js6_A 229 VSKK 232 (355)
T ss_dssp TC--
T ss_pred HHHh
Confidence 8765
No 24
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*
Probab=98.91 E-value=5.8e-09 Score=103.45 Aligned_cols=206 Identities=11% Similarity=0.055 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCCC-CCCcEEEEecCCCceEEEeccCceecccccEEeccc
Q 013888 106 PSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLS-ETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLG 184 (434)
Q Consensus 106 ~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~-~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~G 184 (434)
+...+.+.+ +++.-|+.-..+..+|+++++ +.+... .....+|||+|+++|+++.+.+|.+... ..+++|
T Consensus 167 ~~~v~n~~~-~~~~AGL~v~~lv~ep~Aaa~------a~l~~~~~~~gv~vvDiGggttdisi~~~g~~~~~--~~i~~G 237 (419)
T 4a2a_A 167 LKVYEMFYN-FLQDTVKSPFQLKSSLVSTAE------GVLTTPEKDRGVVVVNLGYNFTGLIAYKNGVPIKI--SYVPVG 237 (419)
T ss_dssp HHHHHHHHH-HHHTTSCSCEEEEEHHHHHHH------HHCCHHHHHHCEEEEEECSSSEEEEEEETTEEEEE--EEESCC
T ss_pred HHHHHHHHH-HHHHcCCcEEEEEEHHHHHHH------HhhccccccCCEEEEEECCCcEEEEEEECCEEEEE--EecccH
Confidence 444455543 457788888899999999987 432100 0135789999999999999999998763 568999
Q ss_pred HHHHHHHHHHHHhhcCCCCCChHHHHHHHHhhcccccccHHHHHHHHHhcCCCCceeEeeeCCCCcccccccccChhhHh
Q 013888 185 GKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQ 264 (434)
Q Consensus 185 G~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~c~v~~~~~~~~~~~~~~~~~~~~~~~~~lpd~~~~~~~~i~~~~~~~ 264 (434)
|+++|+.+.+.+. .....++.+|.++.....+. .....+.+|.....
T Consensus 238 G~~it~dIa~~l~-------~~~~~AE~iK~~~g~a~~~~--------------~~~~~i~v~~~~~~------------ 284 (419)
T 4a2a_A 238 MKHVIKDVSAVLD-------TSFEESERLIITHGNAVYND--------------LKEEEIQYRGLDGN------------ 284 (419)
T ss_dssp HHHHHHHHHHHHT-------CCHHHHHHHHHHHCCSCCTT--------------CCCCEEEEECTTSC------------
T ss_pred HHHHHHHHHHHHC-------CCHHHHHHHHHHhccCcccC--------------CCCceEEEeecCCc------------
Confidence 9999999987663 24567888998765432210 00112222221100
Q ss_pred hhhccCCCCCCCCCccccccchhHHHHHHHhhhhccCCccEEEccCc-cccCCccccCCCCCCCCCCCHHHHHHHHHHhc
Q 013888 265 RYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNE-RFLVPEMIFQPADLGMNQAGLAECIVRAVNSC 343 (434)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~e-r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~ 343 (434)
....++.+ ...+.+..+ ..+.+.|.++|...
T Consensus 285 ---------------------------------------~~~~is~~~l~~ii~p~v---------eei~~~V~~~L~~~ 316 (419)
T 4a2a_A 285 ---------------------------------------TIKTTTAKKLSVIIHARL---------REIMSKSKKFFREV 316 (419)
T ss_dssp ---------------------------------------SEEEEEHHHHHHHHHHHH---------HHHHHHHHHHHHHH
T ss_pred ---------------------------------------cceEEcHHHHHHHHHHHH---------HHHHHHHHHHHHHc
Confidence 01111110 000000000 13566677777665
Q ss_pred Ch---hh-HHHhHcCeEEecCCCCCcChHHHHHHhhcccCCCCceEEEec-----C----------CCCCccccchhhhh
Q 013888 344 HP---YL-HSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITT-----Q----------EDPLLGVWRGGSLL 404 (434)
Q Consensus 344 ~~---d~-r~~l~~nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~-----~----------~~~~~~~w~Gasil 404 (434)
.. +. ...+...|+||||+|++||+.+.+++.+.. ++++.. + .+|.|++-+|-.++
T Consensus 317 ~~~~p~~~~~~~~~~IvLtGG~s~lpgl~e~~~~~~g~------~vri~~~~~~~p~~~~~~~~~~~~P~~~t~~Gl~~~ 390 (419)
T 4a2a_A 317 EAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKS------PVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFA 390 (419)
T ss_dssp TTCC--------TTCEEEESGGGGSTTHHHHHHHHHTS------CEEECCGGGSSSCCCBTCHHHHTCGGGHHHHHTTCC
T ss_pred CCCcccccccccCCEEEEECchhchhhHHHHHHHHHCC------CeEEEecCCCCchhccCcccccCCchHHHHHHHHHH
Confidence 42 21 345678899999999999999999999853 344443 2 36788888888777
Q ss_pred cCc
Q 013888 405 ASS 407 (434)
Q Consensus 405 a~l 407 (434)
+..
T Consensus 391 ~~~ 393 (419)
T 4a2a_A 391 VSE 393 (419)
T ss_dssp ---
T ss_pred Hhh
Confidence 644
No 25
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A
Probab=97.63 E-value=5e-05 Score=75.40 Aligned_cols=61 Identities=11% Similarity=0.198 Sum_probs=50.2
Q ss_pred CcEEEEecCCCceEEEeccCceecccccEEecccHHHHHHHHHHHHhhcCCCCCChHHHHHHHHhhcccc
Q 013888 151 QCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFV 220 (434)
Q Consensus 151 ~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~c~v 220 (434)
.-.++||+|.++|++.-+.+|..+.. ..+++||+.+|..+..-|.- .+...+|+||. +...
T Consensus 407 LGvaiIDmGGGTTd~sVf~~G~lv~a--~~ip~gG~~VT~DIA~~Lgt------~d~~~AErIK~-YG~A 467 (610)
T 2d0o_A 407 RPLAILDLGAGSTDASIINPKGDIIA--THLAGAGDMVTMIIARELGL------EDRYLAEEIKK-YPLA 467 (610)
T ss_dssp SSEEEEEECSSEEEEEEECTTCCEEE--EEEECSHHHHHHHHHHHHTC------CCHHHHHHHHH-SCEE
T ss_pred CCeEEEEeCCCcceEEEEcCCcEEEE--EEeccchHHHHHHHHHHhCC------CCHHHHHHhcc-cCce
Confidence 34579999999999999999988774 45899999999999988852 24778999998 6544
No 26
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6
Probab=97.45 E-value=5.6e-05 Score=75.28 Aligned_cols=61 Identities=15% Similarity=0.153 Sum_probs=50.1
Q ss_pred CcEEEEecCCCceEEEeccCceecccccEEecccHHHHHHHHHHHHhhcCCCCCChHHHHHHHHhhcccc
Q 013888 151 QCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFV 220 (434)
Q Consensus 151 ~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~c~v 220 (434)
.-.++||+|.++|++.-+.+|..+.. ..+++||+.+|..+..-|.- .+...+|+||. +...
T Consensus 409 lGvaiIDmGgGTTd~sVf~~g~lv~a--~~ip~gG~~VT~DIA~~Lg~------~d~~~AErIK~-YG~A 469 (607)
T 1nbw_A 409 APLAILDLGAGSTDAAIVNAEGQITA--VHLAGAGNMVSLLIKTELGL------EDLSLAEAIKK-YPLA 469 (607)
T ss_dssp SSEEEEEECSSEEEEEEECSSSCEEE--EEEECCHHHHHHHHHHHHTC------SCHHHHHHHHH-SCEE
T ss_pred CCeEEEEeCCCcceEEEEcCCcEEEE--EEeccchHHHHHHHHHHhCC------CCHHHHHHhcc-cCce
Confidence 34579999999999999999988774 45899999999999988852 24778999998 6544
No 27
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Probab=94.39 E-value=0.08 Score=49.88 Aligned_cols=78 Identities=17% Similarity=0.152 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhhcCCceeeecc---ccccccccccccCCCCCCCCCCcEEEEecCCCceEEEeccCceecccccEEeccc
Q 013888 108 IQRATDELVFEDFNFKSLFVAD---PPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLG 184 (434)
Q Consensus 108 ~re~l~e~lfE~~~~~~v~~~~---~~~ls~~~~~~~~~~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~G 184 (434)
.++.+++-+-+..|++ +-++. ++.++.+.... ++.....+++|||||.++|.++-+.+|.+.. ...+|+|
T Consensus 90 N~~~fl~~i~~~tG~~-i~vIsG~eEA~l~~~gv~~----~~~~~~~~~lviDIGGGStEl~~~~~~~~~~--~~Sl~lG 162 (315)
T 3mdq_A 90 NKQVLIDRIKKEVNID-VEVIDGAREAELIFRGVQQ----AVPMEDHISLAMDIGGGSVEFIIGNKNEILW--KQSFEIG 162 (315)
T ss_dssp THHHHHHHHHHHHCCC-EEECCHHHHHHHHHHHHHH----HSCCTTCCEEEEEECSSCEEEEEECSSCEEE--EEEESCC
T ss_pred CHHHHHHHHHHHHCCC-eEEeCHHHHHHHHHHHHHh----cCCCCCCCEEEEEeCCCceEEEEEECCeEee--eEEEech
Confidence 3445666677777876 33433 33333331111 1111135789999999999999999887665 5678999
Q ss_pred HHHHHHHH
Q 013888 185 GKALTNYL 192 (434)
Q Consensus 185 G~~l~~~l 192 (434)
.-.+++.+
T Consensus 163 ~vrl~e~f 170 (315)
T 3mdq_A 163 GQRLIDRF 170 (315)
T ss_dssp HHHHHHHS
T ss_pred hhHHHHHh
Confidence 98877654
No 28
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=93.92 E-value=0.018 Score=53.17 Aligned_cols=64 Identities=19% Similarity=0.286 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhcChhhHHHhHcCeEEecCCCCCcChHHHHHHhhcccCCCCceEEEecCCCCCccccchhhhhc
Q 013888 332 LAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLA 405 (434)
Q Consensus 332 l~~~I~~~i~~~~~d~r~~l~~nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasila 405 (434)
+.+.|.+.+... -.+....+.|+|+||.+..|+++++|++.+. .++..+++|.+..-+||+++|
T Consensus 189 ~~~~v~~~l~~~--~~~~~~~~~vvl~GGva~n~~lr~~l~~~~g--------~~~~~p~~p~~~~A~GAAl~A 252 (276)
T 4ehu_A 189 IHTSVAKRVSSL--VKRIGVQRNVVMVGGVARNSGIVRAMAREIN--------TEIIVPDIPQLTGALGAALYA 252 (276)
T ss_dssp HHHHHHHHHHHH--HHHHCCCSSEEEESGGGGCHHHHHHHHHHHT--------SCEECCSSGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHhcccCCeEEEecCccchHHHHHHHHHHHC--------CCeeeCCCcchHHHHHHHHHH
Confidence 444444444322 2234455789999999999999999998873 245667788888889999987
No 29
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Probab=92.93 E-value=0.29 Score=49.35 Aligned_cols=77 Identities=12% Similarity=0.009 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhhcCCceeeecc---ccccccccccccCCCCCCCCCCcEEEEecCCCceEEEeccCceecccccEEeccc
Q 013888 108 IQRATDELVFEDFNFKSLFVAD---PPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLG 184 (434)
Q Consensus 108 ~re~l~e~lfE~~~~~~v~~~~---~~~ls~~~~~~~~~~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~G 184 (434)
.++.+++-+-+..|++ +-++. ++.++..+... +.. ....++|||||.++|.++-+.+|.+.. ...+|+|
T Consensus 97 N~~~fl~~i~~~tG~~-i~vIsG~eEA~l~~~gv~~--~~~---~~~~~lviDIGGGStEl~~~~~~~~~~--~~Sl~lG 168 (513)
T 1u6z_A 97 NATDFLKRAEKVIPYP-IEIISGNEEARLIFMGVEH--TQP---EKGRKLVIDIGGGSTELVIGENFEPIL--VESRRMG 168 (513)
T ss_dssp THHHHHHHHTTTCSSC-EEECCHHHHHHHHHHHHHH--HSC---CCSCEEEEEECSSCEEEEEEETTEEEE--EEEESCC
T ss_pred CHHHHHHHHHHHHCCC-EEEeCHHHHHHHHHHHHHh--hcc---CCCCEEEEEECCCcEEEEEEeCCeeeE--EEEEecc
Confidence 3455666677777876 34444 23333331111 111 122699999999999999888887654 5678999
Q ss_pred HHHHHHHH
Q 013888 185 GKALTNYL 192 (434)
Q Consensus 185 G~~l~~~l 192 (434)
.-.+++.+
T Consensus 169 ~vrlte~f 176 (513)
T 1u6z_A 169 CVSFAQLY 176 (513)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888765
No 30
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Probab=92.49 E-value=0.36 Score=48.52 Aligned_cols=75 Identities=11% Similarity=-0.076 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhhcCCceeeecc---ccccccccccccCCCCCCCCCCcEEEEecCCCceEEEeccCceecccccEEeccc
Q 013888 108 IQRATDELVFEDFNFKSLFVAD---PPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLG 184 (434)
Q Consensus 108 ~re~l~e~lfE~~~~~~v~~~~---~~~ls~~~~~~~~~~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~G 184 (434)
.++.+++-+-+..|++ +-++. ++-++..+... +. ....++|||||.++|.++-+.+|.+.. ...+|+|
T Consensus 101 N~~~fl~~i~~~tG~~-ievIsG~EEA~l~~~gv~~--~~----~~~~~lvvDIGGGStEl~~~~~~~~~~--~~Sl~lG 171 (508)
T 3hi0_A 101 NGPDFIREAEAILGCE-IEVLSGEKEALYSAYGVIS--GF----YQPDGIAGDLGGGSLELIDIKDKSCGE--GITLPLG 171 (508)
T ss_dssp THHHHHHHHHHHHTSC-EEECCHHHHHHHHHHHHHH--HS----SSCEEEEEEECSSCEEEEEEETTEECC--CEEESCC
T ss_pred CHHHHHHHHHHHHCCC-eEEecHHHHHHHHHHHHHh--cC----CCCCeEEEEeCCCceEEEEeeCCeeee--EEEecce
Confidence 3455666777778877 34443 33333331111 11 134689999999999999999988765 5678999
Q ss_pred HHHHHHH
Q 013888 185 GKALTNY 191 (434)
Q Consensus 185 G~~l~~~ 191 (434)
.-.+++.
T Consensus 172 ~vrl~e~ 178 (508)
T 3hi0_A 172 GLRLSEQ 178 (508)
T ss_dssp HHHHHHH
T ss_pred EEehhhc
Confidence 9888764
No 31
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Probab=91.49 E-value=3.6 Score=38.37 Aligned_cols=57 Identities=11% Similarity=0.043 Sum_probs=38.8
Q ss_pred HHHhhhcCCceeeeccccccccccccccCCCCCCCCCCcEEEEecCCCceEEEeccCceecc
Q 013888 114 ELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVN 175 (434)
Q Consensus 114 e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~ 175 (434)
+.+-+.|++| +++.+++-++++..... +.+ ....+.++|-+|.+ .-..-|.+|.++.
T Consensus 90 ~~l~~~~~~p-v~v~NDa~aaal~E~~~-g~~--~~~~~~~~l~~GtG-iG~gii~~G~l~~ 146 (321)
T 3vgl_A 90 DKVEQRVGLP-VVVENDANAAAWGEYRF-GAG--QGHDDVICITLGTG-LGGGIIIGNKLRR 146 (321)
T ss_dssp HHHHHHHCSC-EEEEEHHHHHHHHHHHH-STT--TTCSSEEEEEESSS-EEEEEEETTEECC
T ss_pred HHHhhhhCCC-EEEEehhhhHHHHHHHh-CCC--CCCCCEEEEEeCcc-eEEEEEECCEEec
Confidence 4444567888 88889888887743210 111 12678899999976 6667778999876
No 32
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A
Probab=89.40 E-value=0.24 Score=46.46 Aligned_cols=25 Identities=24% Similarity=0.386 Sum_probs=23.6
Q ss_pred CcEEEEecCCCceEEEeccCceecc
Q 013888 151 QCSLVVDCGFSFTHAAPVFQNFTVN 175 (434)
Q Consensus 151 ~tglVVDiG~~~t~v~pV~dG~~~~ 175 (434)
.++++||||..+|+++||.+|.++.
T Consensus 127 ~~~llvDIGsTTTDIipi~~G~pl~ 151 (334)
T 3cet_A 127 ENCILVDMGSTTTDIIPIVEGKVVA 151 (334)
T ss_dssp SSEEEEEECSSCEEEEEEETTEECC
T ss_pred CCEEEEEcCcchhhhhhhcCCeecc
Confidence 5799999999999999999999976
No 33
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14
Probab=85.76 E-value=0.34 Score=44.80 Aligned_cols=70 Identities=13% Similarity=-0.006 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHhcCh-hhHHHhHcCeEEecC-CCCCcChHHHHHHhhcccCCCCceEEEecCCCCCccccchhhhhc
Q 013888 331 GLAECIVRAVNSCHP-YLHSVLYESIILTGG-STLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLA 405 (434)
Q Consensus 331 ~l~~~I~~~i~~~~~-d~r~~l~~nIiltGG-~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasila 405 (434)
+|..+|.+.|..+.. -.++.=.++|+++|| .+..|++.++|.+.+... ..++..+++++|..-+||.+++
T Consensus 215 sl~~sV~~~I~~la~~~a~~~~i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~-----~~~~~~p~~~~~~gAlGAaL~~ 286 (287)
T 2ews_A 215 AVIGVVGEVVTTMAITVAREFKTENIVYIGSSFHNNALLRKVVEDYTVLR-----GCKPYYVENGAFSGAIGALYLE 286 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEEESGGGTTCHHHHHHHHHHHHHT-----TCEEEECTTGGGHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchhcCHHHHHHHHHHHhhC-----CceEEECCCccHHHHHHHHHhC
Confidence 344555544433321 112233457999999 899999999999875432 3466668889999999999876
No 34
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}
Probab=80.29 E-value=5.1 Score=37.26 Aligned_cols=67 Identities=19% Similarity=0.177 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhcChhhHHHhHcCeEEecCCCCC-cChHHHHHHhhcccCCCC--ceEEEecCCCCCccccchhhhhc
Q 013888 332 LAECIVRAVNSCHPYLHSVLYESIILTGGSTLF-PRFAERLERELRPLVPDD--YQVKITTQEDPLLGVWRGGSLLA 405 (434)
Q Consensus 332 l~~~I~~~i~~~~~d~r~~l~~nIiltGG~s~~-~G~~~RL~~eL~~~~~~~--~~v~v~~~~~~~~~~w~Gasila 405 (434)
|...|...+.-++++ .|||.||.+.. +-|.++|++.|....... ..+.|..+.-...+.-+||+.++
T Consensus 248 La~~i~~l~~~ldP~-------~IvlgG~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~~s~l~~~a~~~GAa~l~ 317 (321)
T 3r8e_A 248 IGESLVNIVRVMDLN-------NILLGGGISGAFDYFVPNLKKAMLEHLPTYYTDDMYIGKATLENDAGLLGAAGLI 317 (321)
T ss_dssp HHHHHHHHHHHHCCC-------EEEEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEECSSGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-------EEEEeChhcccchHHHHHHHHHHHHhcccccCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 556666666666654 58888887765 567888888887765321 13455555444567788988765
No 35
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*
Probab=77.03 E-value=2.6 Score=39.36 Aligned_cols=77 Identities=21% Similarity=0.017 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhhcCCceeeecc---ccccccccccccCCCCCCCCCCcEEEEecCCCceEEEeccCceecccccEEeccc
Q 013888 108 IQRATDELVFEDFNFKSLFVAD---PPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLG 184 (434)
Q Consensus 108 ~re~l~e~lfE~~~~~~v~~~~---~~~ls~~~~~~~~~~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~G 184 (434)
.++.+++.+-+..|++ +-++. ++.++..... .++. ...+++|||||.++|.++-+.+|.+.. ...+|+|
T Consensus 98 N~~~fl~~v~~~~G~~-i~vIsg~eEA~l~~~gv~----~~l~-~~~~~lvvDIGGGStEl~~~~~~~~~~--~~Sl~~G 169 (315)
T 1t6c_A 98 NAEEFLERVKREVGLV-VEVITPEQEGRYAYLAVA----YSLK-PEGEVCVVDQGGGSTEYVFGKGYKVRE--VISLPIG 169 (315)
T ss_dssp THHHHHHHHHHHTCCC-EEECCHHHHHHHHHHHHH----HHTC-CCSEEEEEEEETTEEEEEEEETTEEEE--EEEECCC
T ss_pred CHHHHHHHHHHHHCCC-EEEcCHHHHHHHHHHHHH----hhcc-cCCCEEEEEeCCCcEEEEEEeCCceee--EEEEecc
Confidence 4456677777777876 34444 2333332111 0111 145799999999999999998887754 5678999
Q ss_pred HHHHHHHH
Q 013888 185 GKALTNYL 192 (434)
Q Consensus 185 G~~l~~~l 192 (434)
+-.+++.+
T Consensus 170 ~v~l~e~~ 177 (315)
T 1t6c_A 170 IVNLTETF 177 (315)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99888765
No 36
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*
Probab=74.10 E-value=2.3 Score=40.48 Aligned_cols=73 Identities=12% Similarity=-0.039 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHhcCh-hhHHHhHcCeEEecC-CCCCcChHHHHHHhhcccCCCCceEEEecCCCCCccccchhhhhc
Q 013888 331 GLAECIVRAVNSCHP-YLHSVLYESIILTGG-STLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLA 405 (434)
Q Consensus 331 ~l~~~I~~~i~~~~~-d~r~~l~~nIiltGG-~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasila 405 (434)
+|..+|.+.|..... -.++.=.++|+++|| .+.-|++.+.|.+.|.-.-.. .+++..++++++..-+||.+++
T Consensus 284 gll~sVa~~I~~lA~l~A~~~~i~~IvftGgfla~n~~~~~~L~~~l~~ws~g--~~~~~~~~~~~y~GAlGAaL~~ 358 (360)
T 2i7n_A 284 ATLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKG--QLKALFLEHEGYFGAVGALLEL 358 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCEEEESGGGCSSSHHHHHHHHHHHHHTTT--SCCEEEETTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeEEEeCcccccCHHHHHHHHHHHhhhhcC--CeeEEEcCCccHHHHHHHHHHh
Confidence 455666666554432 123344468999999 999999999999998532221 2334445678999999998764
No 37
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}
Probab=72.44 E-value=3.8 Score=38.73 Aligned_cols=80 Identities=14% Similarity=-0.011 Sum_probs=49.6
Q ss_pred HHHHHHHHHhhhcCCceeeecc---ccccccccccccCCCCCCC--CCCcEEEEecCCCceEEEeccC--ceec--cccc
Q 013888 108 IQRATDELVFEDFNFKSLFVAD---PPSLVHLYEASRRPYGLLS--ETQCSLVVDCGFSFTHAAPVFQ--NFTV--NYAV 178 (434)
Q Consensus 108 ~re~l~e~lfE~~~~~~v~~~~---~~~ls~~~~~~~~~~g~~~--~~~tglVVDiG~~~t~v~pV~d--G~~~--~~~~ 178 (434)
.++.+++-+-+..|++ +-++. ++.++..... +++.. ....++|||||.++|.++-+.+ +.+. ....
T Consensus 103 N~~~fl~~v~~~tGi~-ieVIsG~eEA~l~~~gv~----~~~~~~~~~~~~lviDIGGGStel~~~~~~~~~~~~~~~~~ 177 (343)
T 3cer_A 103 NREEFEDEIERILGVR-PEVIPGTEEADLSFLGAT----SVVNRDDLPAPYLVVDLGGGSTELVIGGDGVSAPTTQVQGA 177 (343)
T ss_dssp THHHHHHHHHHHHSSC-CEECCHHHHHHHHHHHHH----SSCCTTTCCSSEEEEEECSSCEEEEECCCSSSSCTTSCSEE
T ss_pred CHHHHHHHHHHHHCCC-EEEeCHHHHHHHHHHHHH----hhCccccccCCEEEEEeCCCceEEEEeecCccCccccccee
Confidence 3455667777777876 34444 3333333211 11111 1356999999999999998877 4331 1235
Q ss_pred EEecccHHHHHHHH
Q 013888 179 KRIDLGGKALTNYL 192 (434)
Q Consensus 179 ~~~~~GG~~l~~~l 192 (434)
..+|+|+..+++.+
T Consensus 178 ~SlplG~v~lt~~~ 191 (343)
T 3cer_A 178 FSMNIGSVRMTERH 191 (343)
T ss_dssp EEESCCHHHHHHHT
T ss_pred EEEehhHHHHHHHh
Confidence 67899999998765
No 38
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}
Probab=71.35 E-value=35 Score=30.78 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=17.0
Q ss_pred CCCeEEEEcCCcceEEeecCCC
Q 013888 1 MSNIVVLDNGGGLIKAGHGGER 22 (434)
Q Consensus 1 ~~~~vViD~Gs~~~k~G~ag~~ 22 (434)
|+-.++||+|..++|+|+-.++
T Consensus 1 M~MlL~IDIGNT~iK~gl~d~~ 22 (266)
T 3djc_A 1 MSLILCIDVGNSHIYGGVFDGD 22 (266)
T ss_dssp --CEEEEEECSSEEEEEEEETT
T ss_pred CceEEEEEECCCeEEEEEEECC
Confidence 5667999999999999986543
No 39
>3zx3_A Ectonucleoside triphosphate diphosphohydrolase 1; domain rotation, purinergic signaling; 1.70A {Rattus norvegicus} PDB: 3zx2_A* 3zx0_A*
Probab=66.80 E-value=8.6 Score=37.72 Aligned_cols=22 Identities=23% Similarity=-0.058 Sum_probs=17.4
Q ss_pred CcEEEEecCCCceEEEeccCce
Q 013888 151 QCSLVVDCGFSFTHAAPVFQNF 172 (434)
Q Consensus 151 ~tglVVDiG~~~t~v~pV~dG~ 172 (434)
.+..|||+|.++|.|+=..++.
T Consensus 181 ~t~g~lDlGGgStQi~f~~~~~ 202 (452)
T 3zx3_A 181 STFGALDLGGASTQITFVPLNS 202 (452)
T ss_dssp CCCEEEEECSSEEEEEECCSSC
T ss_pred CceEEEecCCCceEEEeccCCC
Confidence 4667889999999998666553
No 40
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5
Probab=66.44 E-value=1.4 Score=40.27 Aligned_cols=48 Identities=23% Similarity=0.203 Sum_probs=38.4
Q ss_pred HcCeEEecCCCCCcChHHHHHHhhcccCCCCceEEEecCCCCCccccchhhhhcCc
Q 013888 352 YESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLASS 407 (434)
Q Consensus 352 ~~nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasila~l 407 (434)
.+.|+++||.+.-+++.+.+.+.|.. .|..++.+.+..-+||+++|..
T Consensus 209 ~~~i~~~GG~a~n~~~~~~~~~~lg~--------~v~~p~~~~~~~AlGAAl~A~~ 256 (270)
T 1hux_A 209 VKDVVMTGGVAQNYGVRGALEEGLGV--------EIKTSPLAQYNGALGAALYAYK 256 (270)
T ss_dssp CSSEEEESGGGGCHHHHHHHHHHHCS--------CEECCGGGGGHHHHHHHHHHHH
T ss_pred CCeEEEeCccccCHHHHHHHHHHHCC--------CeEeCCCcchHhHHHHHHHHHH
Confidence 36799999999999999999998853 2445666777788999999843
No 41
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}
Probab=62.96 E-value=59 Score=29.24 Aligned_cols=18 Identities=39% Similarity=0.287 Sum_probs=15.2
Q ss_pred eEEEEcCCcceEEeecCC
Q 013888 4 IVVLDNGGGLIKAGHGGE 21 (434)
Q Consensus 4 ~vViD~Gs~~~k~G~ag~ 21 (434)
.++||+|-.++|.|+-.+
T Consensus 2 lL~IDIGNT~ik~gl~~~ 19 (268)
T 2h3g_X 2 IFVLDVGNTNAVLGVFEE 19 (268)
T ss_dssp EEEEEECSSEEEEEEEET
T ss_pred EEEEEECcCcEEEEEEEC
Confidence 378999999999997654
No 42
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10
Probab=60.27 E-value=5.2 Score=36.45 Aligned_cols=66 Identities=18% Similarity=0.172 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcChhhHHHhHcCeEEecCCCCCcChHHHHHHhhcccCCCCceEEEecCCCCCccccchhhhhc
Q 013888 332 LAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLA 405 (434)
Q Consensus 332 l~~~I~~~i~~~~~d~r~~l~~nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasila 405 (434)
|..+|...+..++++ .|+|.||.+..+-|.+++++.+...... ..+.+..+.-...+..+||..++
T Consensus 221 L~~~i~~l~~~l~p~-------~ivlgG~~~~~~~~~~~l~~~l~~~~~~-~~~~i~~~~~~~~a~~~GAa~l~ 286 (289)
T 2aa4_A 221 LARLIADIKATTDCQ-------CVVVGGSVGLAEGYLALVETYLAQEPAA-FHVDLLAAHYRHDAGLLGAALLA 286 (289)
T ss_dssp HHHHHHHHHHHHCCS-------EEEEEHHHHTSTTHHHHHHHHHTTSCGG-GCCEEEECSCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC-------EEEEeCcccccHHHHHHHHHHHHHhcCc-cCCEEEECCCCCchHHHHHHHHH
Confidence 556666666666654 5888888877788999999999876322 24455544444556778988765
No 43
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}
Probab=59.05 E-value=8.5 Score=35.30 Aligned_cols=65 Identities=18% Similarity=0.217 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhcChhhHHHhHcCeEEecCCCCCcChHHHHHHhhcccCCCCceEEEecCCCCCccccchhhhhc
Q 013888 332 LAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLA 405 (434)
Q Consensus 332 l~~~I~~~i~~~~~d~r~~l~~nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasila 405 (434)
|...|...+.-++++ .|+|.||.+..+.|.+++++.|....... +.|..+.-...+.-+||..++
T Consensus 225 La~~i~~l~~~~~p~-------~IvlgGgi~~~~~~~~~l~~~l~~~~~~~--~~i~~s~lg~~a~~~GAa~l~ 289 (297)
T 4htl_A 225 ICTGLYNLIYLFDPT-------HIFIGGGITSRPTFIAELKHHMESFGLRD--TIIETATHKNQAGLLGAVYHF 289 (297)
T ss_dssp HHHHHHHHHHHHCCS-------EEEEESGGGGSTTHHHHHHHHHTTTCCTT--CEEEECSCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-------EEEEeCcccccHHHHHHHHHHHHHhccCC--CeEEECCcCChHHHHhHHHHH
Confidence 555666666666655 48999998888899999999998765433 344444444567888988765
No 44
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A
Probab=58.15 E-value=68 Score=28.43 Aligned_cols=19 Identities=11% Similarity=0.062 Sum_probs=15.7
Q ss_pred eEEEEcCCcceEEeecCCC
Q 013888 4 IVVLDNGGGLIKAGHGGER 22 (434)
Q Consensus 4 ~vViD~Gs~~~k~G~ag~~ 22 (434)
-++||+|..++|.|+-.++
T Consensus 5 ~L~IDIGNT~ik~gl~~~~ 23 (249)
T 3bex_A 5 YLLVDVGNTHSVFSITEDG 23 (249)
T ss_dssp EEEEEECSSEEEEEEESSS
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 4789999999999987543
No 45
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}
Probab=54.75 E-value=10 Score=35.35 Aligned_cols=67 Identities=22% Similarity=0.289 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhcChhhHHHhHcCeEEecCCCCCcChHHHHHHhhcccCCC-CceEEEecCCCCCccccchhhhhc
Q 013888 332 LAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPD-DYQVKITTQEDPLLGVWRGGSLLA 405 (434)
Q Consensus 332 l~~~I~~~i~~~~~d~r~~l~~nIiltGG~s~~~G~~~RL~~eL~~~~~~-~~~v~v~~~~~~~~~~w~Gasila 405 (434)
|...|...+..++++ .|+|.||.+..+-|.+++++.|.+.... ...+.|..+.-...+.-+||+.++
T Consensus 257 La~~i~~l~~~l~p~-------~IvlgGgi~~~~~l~~~l~~~l~~~~~~~~~~~~i~~s~lg~~a~~~GAa~l~ 324 (327)
T 4db3_A 257 LAICFGNIFTANDPH-------VVALGGGLSNFELIYEEMPKRVPKYLLSVAKCPKIIKAKHGDSGGVRGAAFLN 324 (327)
T ss_dssp HHHHHHHHHHHHCCS-------EEEEESGGGGCTHHHHHHHHHGGGGSCTTCCCCEEEECSCGGGHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCC-------EEEEeCcccchHHHHHHHHHHHHHHhccccCCCEEEECCCCCcHHHHHHHHHH
Confidence 555666666656654 5888888888878889999988876532 224455555444556778988765
No 46
>3aap_A Ectonucleoside triphosphate diphosphohydrolase I; adenosine triphosphatase, ntpdase; 1.60A {Legionella pneumophila} PDB: 3aaq_A* 3aar_A*
Probab=48.42 E-value=11 Score=35.69 Aligned_cols=36 Identities=11% Similarity=0.017 Sum_probs=26.6
Q ss_pred CCcEEEEecCCCceEEEeccC--ceecccccEEecccH
Q 013888 150 TQCSLVVDCGFSFTHAAPVFQ--NFTVNYAVKRIDLGG 185 (434)
Q Consensus 150 ~~tglVVDiG~~~t~v~pV~d--G~~~~~~~~~~~~GG 185 (434)
..+.+|||+|.++|.++-... +.+.......+++||
T Consensus 139 ~~t~~v~DiGGGStei~~~~~~~~~~~~~~~~sl~lG~ 176 (353)
T 3aap_A 139 NKSVGVMDMGGASVQIVFPMPKNAEISKHNQVELNIYG 176 (353)
T ss_dssp SSCEEEEEECSSEEEEEEECCCCTTSCGGGEEEEEETT
T ss_pred cccEEEEEeCCCceEEEEecCCccccCCCceEEEEECC
Confidence 347999999999999987644 344444456788887
No 47
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Probab=47.69 E-value=4.2 Score=37.15 Aligned_cols=57 Identities=12% Similarity=0.035 Sum_probs=41.0
Q ss_pred HHHHHhhhcCCceeeeccccccccccccccCCCCCCCCCCcEEEEecCCCceEEEeccCceeccc
Q 013888 112 TDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNY 176 (434)
Q Consensus 112 l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~ 176 (434)
+.+.+ +.|++| +++.+++-++++.... .+.+ ..+.++|-+|.+ +-..-|.+|.++..
T Consensus 87 l~~~l-~~~~~p-v~v~NDa~aaa~~e~~-~~~~----~~~~v~l~~GtG-iG~giv~~G~l~~G 143 (292)
T 2gup_A 87 WYEAL-SSYQLP-VHLENDANCVGLSELL-AHPE----LENAACVVIGTG-IGGAMIINGRLHRG 143 (292)
T ss_dssp HHHHT-GGGCCC-EEEEEHHHHHHHHHHH-HCTT----CSSEEEEEESSS-EEEEEEETTEEECC
T ss_pred HHHHH-HHcCCC-EEEechHHHHHHHHHH-hcCC----CCeEEEEEECCc-eEEEEEECCEEEec
Confidence 55677 889998 8888998888884321 0123 678999999986 55666779987763
No 48
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Probab=45.04 E-value=16 Score=34.90 Aligned_cols=65 Identities=12% Similarity=0.085 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhc--ChhhHHHhHcCeEEecCCCCCcC-hHHHHHHhhcccCCCCceEEEecCCCCCccccchhhhhcCc
Q 013888 332 LAECIVRAVNSC--HPYLHSVLYESIILTGGSTLFPR-FAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLASS 407 (434)
Q Consensus 332 l~~~I~~~i~~~--~~d~r~~l~~nIiltGG~s~~~G-~~~RL~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasila~l 407 (434)
|...|...+..+ ++| .|||+||.+...- |.+++++.+.... ++.|........+.-+||..++..
T Consensus 281 la~~i~~l~~~l~~~p~-------~IvlgGgi~~~~~~l~~~i~~~l~~~~----~~~i~~~~~~~~a~~~GAa~l~~~ 348 (381)
T 1saz_A 281 IAKWIGKMAAVLKGEVD-------FIVLTGGLAHEKEFLVPWITKRVSFIA----PVLVFPGSNEEKALALSALRVLRG 348 (381)
T ss_dssp HHHHHHHHHHHTTTCCS-------EEEEEEGGGGCTTTHHHHHHHHHTTTS----CEEEEEBCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCC-------EEEEeCcCccChHHHHHHHHHHHHhhc----CeEEEecCcchhHHHHHHHHHHcC
Confidence 455555555555 443 6999999887655 8999999998764 355554443334677888877643
No 49
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus}
Probab=44.68 E-value=8.8 Score=35.31 Aligned_cols=67 Identities=16% Similarity=0.119 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcChhhHHHhHcCeEEecCCC-CC-cChHHHHHHhhcccCCCCceEEEecCCCCCccccchhhhhc
Q 013888 332 LAECIVRAVNSCHPYLHSVLYESIILTGGST-LF-PRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLA 405 (434)
Q Consensus 332 l~~~I~~~i~~~~~d~r~~l~~nIiltGG~s-~~-~G~~~RL~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasila 405 (434)
|...|...+.-++++ .|+|.||.+ .. +-|.++++++|.+.........|..+.-...+.-+||..++
T Consensus 225 l~~~i~~l~~~~~p~-------~ivlgG~i~~~~~~~l~~~l~~~l~~~~~~~~~~~i~~s~lg~~a~~~GAa~l~ 293 (302)
T 3vov_A 225 VGIGLASLVKAFDPG-------VVVLGGGVALNAPEGYWEALLEAYRRYLQGWEAPPLRRARLGAEAGLLGAALTA 293 (302)
T ss_dssp HHHHHHHHHHHHCCS-------EEEEESHHHHTSCHHHHHHHHHHHHHTTTTSCCCCEEECSSGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-------EEEEeChhHhhhhHHHHHHHHHHHHHhcchhcCCcEEEcCCCCcHHHHHHHHHH
Confidence 555566666555554 578888877 55 45888888888776543222234444434456778988765
No 50
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=43.79 E-value=8.1 Score=35.77 Aligned_cols=67 Identities=21% Similarity=0.164 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcChhhHHHhHcCeEEecCCCC-CcChHHHHHHhhcccCCCCc--eEEEecCCCCCccccchhhhhc
Q 013888 332 LAECIVRAVNSCHPYLHSVLYESIILTGGSTL-FPRFAERLERELRPLVPDDY--QVKITTQEDPLLGVWRGGSLLA 405 (434)
Q Consensus 332 l~~~I~~~i~~~~~d~r~~l~~nIiltGG~s~-~~G~~~RL~~eL~~~~~~~~--~v~v~~~~~~~~~~w~Gasila 405 (434)
|..+|...+..++++ .|+|.||.+. .+-|.+++++.+........ .+.|..+.-...+.-+||..++
T Consensus 250 L~~~i~~l~~~l~p~-------~IvlgGg~~~~~~~~~~~l~~~l~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~l~ 319 (326)
T 2qm1_A 250 LGLATGNLGNTLNPD-------SVVIGGGVSAAGEFLRSRVEKYFQEFTFPQVRNSTKIKLAELGNEAGVIGAASLA 319 (326)
T ss_dssp HHHHHHHHHHHHCCS-------EEEEEESGGGGTHHHHHHHHHHHHHTSCHHHHTTSEEEECSSGGGHHHHHHHHHG
T ss_pred HHHHHHHHHHhcCCC-------EEEEcChhhhchHHHHHHHHHHHHHhhhhccCCCcEEEEcCcCchHHHHHHHHHH
Confidence 555566666656554 5888888775 56688888888877643211 2344444333456778988776
No 51
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=43.55 E-value=13 Score=35.46 Aligned_cols=67 Identities=10% Similarity=0.087 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcChhhHHHhHcCeEEecCCCCC-cChHHHHHHhhcccCCCCceEEEecCCCCCccccchhhhhc
Q 013888 332 LAECIVRAVNSCHPYLHSVLYESIILTGGSTLF-PRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLA 405 (434)
Q Consensus 332 l~~~I~~~i~~~~~d~r~~l~~nIiltGG~s~~-~G~~~RL~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasila 405 (434)
|..+|...+.-++++ .|+|.||.+.. +-|.+++++.+.........+.|....-...+.-+||..++
T Consensus 302 La~~i~~l~~~ldP~-------~IvlgG~~~~~~~~l~~~l~~~l~~~~~~~~~~~i~~s~~~~~a~~~GAa~l~ 369 (380)
T 2hoe_A 302 FSIGLLNLIHLFGIS-------KIVIGGFFKELGENFLKKIKIEVETHLLYKHSVDMSFSKVQEPVIAFGAAVHA 369 (380)
T ss_dssp HHHHHHHHHHHHCCC-------EEEEEEGGGGGHHHHHHHHHHHHHHHCSSSCCCEEEECCCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-------EEEEcCchhhhhHHHHHHHHHHHHHhcCCCCCcEEEEcCCCCcHHHHHHHHHH
Confidence 555666666666654 58888888754 66778888887765432223445444333456778988765
No 52
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5
Probab=40.88 E-value=1.4e+02 Score=26.67 Aligned_cols=71 Identities=10% Similarity=-0.056 Sum_probs=45.3
Q ss_pred cEEEeccCCCCHHHHHHHHHHHhhhcCC-ceeeeccccccccccccccCCCCCCCCCCcEEEEecCCCceEEEeccCcee
Q 013888 95 SLLLTEPLFALPSIQRATDELVFEDFNF-KSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFT 173 (434)
Q Consensus 95 ~vll~e~~~~~~~~re~l~e~lfE~~~~-~~v~~~~~~~ls~~~~~~~~~~g~~~~~~tglVVDiG~~~t~v~pV~dG~~ 173 (434)
.+-+..|-.. ......+.+.+=+.+++ ..+.+.+++-++++.. .| ..++++|=+|.+.--..-+.+|..
T Consensus 62 ~igig~pG~~-~~~~~~l~~~l~~~~~~~~pv~v~NDa~~aa~ge-----~g----~~~~v~v~~GTGigg~~i~~~G~~ 131 (291)
T 1zbs_A 62 AVYFYGAGCT-PAKAPMLNEALDSMLPHCDRIEVAGDMLGAARAL-----CG----DSEGIACILGTGSNSCLFDGREIK 131 (291)
T ss_dssp EEEEEETTCC-TTTHHHHHHHHHHHSTTCSEEEEECHHHHHHHHH-----TT----TSCEEEEEESSSEEEEEECSSSEE
T ss_pred EEEEECCCCC-hHHHHHHHHHHHHhcCCCCcEEEeCcHHHHHHhh-----cC----CCCcEEEEecCChheEEECCCCcE
Confidence 3555555543 22222455555566775 3589999999999832 23 678888889987644555569987
Q ss_pred cc
Q 013888 174 VN 175 (434)
Q Consensus 174 ~~ 175 (434)
..
T Consensus 132 ~~ 133 (291)
T 1zbs_A 132 AN 133 (291)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 53
>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10
Probab=37.12 E-value=16 Score=33.88 Aligned_cols=58 Identities=9% Similarity=-0.011 Sum_probs=37.8
Q ss_pred HHHhhhcCCceeeeccccccccccccccCCCCCCCCCCcEEEEecCCCceEEEeccCceeccc
Q 013888 114 ELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNY 176 (434)
Q Consensus 114 e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~ 176 (434)
+.+=+.+++| +++.+++-++++.... .|......+.++|-+|.+ .-..-|.+|.++..
T Consensus 114 ~~l~~~~~~p-v~v~NDa~aaalgE~~---~g~~~~~~~~v~l~~GtG-iG~giv~~G~l~~G 171 (327)
T 2ap1_A 114 ADLSARLDRD-VRLDNDANCFALSEAW---DDEFTQYPLVMGLILGTG-VGGGLVLNGKPITG 171 (327)
T ss_dssp HHHHHHHTSC-EEEEEHHHHHHHHHHT---STTGGGCSEEEEEEESSS-EEEEEEETTEEECC
T ss_pred HHHHHHHCCC-EEEecHHHHHHHHHHH---hCcCCCCCcEEEEEECCc-EEEEEEECCEEeec
Confidence 3444556888 8888998888874321 111112568889999976 55666779987763
No 54
>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural GENO protein structure initiative, midwest center for structural genomics; HET: MLY MSE MLZ ADP; 1.66A {Bacillus subtilis} PDB: 1xc3_A 3ohr_A* 3lm9_A*
Probab=36.04 E-value=17 Score=33.33 Aligned_cols=60 Identities=10% Similarity=0.005 Sum_probs=39.8
Q ss_pred HHHHhhhcCCceeeeccccccccccccccCCCCCCCCCCcEEEEecCCCceEEEeccCceecccc
Q 013888 113 DELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYA 177 (434)
Q Consensus 113 ~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~~ 177 (434)
.+.|=+.|++| |++.+++-++++..... +.+ ....+.++|-+|.+ .=..-|.+|.++.-.
T Consensus 90 ~~~l~~~~~~p-V~v~NDanaaalaE~~~-G~~--~~~~~~~~l~~GtG-iG~gii~~G~l~~G~ 149 (302)
T 3epq_A 90 LQTVXNEMXIP-VGFSTDVNAAALGEFLF-GEA--XGLDSCLYITIGTG-IGAGAIVEGRLLQGL 149 (302)
T ss_dssp HHHHHHHHCSC-EEEEEHHHHHHHHHHHH-STT--TTCSCEEEEEESSS-EEEEEEETTEECCSS
T ss_pred HHHHHHHhCCC-EEEechhHHHHHHHHHh-CCC--CCCCcEEEEEECCc-eEEEEEECCEEcccC
Confidence 34445667888 88889888887744210 111 12678899999975 556667799988743
No 55
>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A
Probab=34.13 E-value=27 Score=34.28 Aligned_cols=51 Identities=14% Similarity=0.095 Sum_probs=39.1
Q ss_pred CeEEecCCCCCcChHHHHHHhhcccCCC------CceEEEecCCCCCccccchhhhhcCc
Q 013888 354 SIILTGGSTLFPRFAERLERELRPLVPD------DYQVKITTQEDPLLGVWRGGSLLASS 407 (434)
Q Consensus 354 nIiltGG~s~~~G~~~RL~~eL~~~~~~------~~~v~v~~~~~~~~~~w~Gasila~l 407 (434)
.|.+-||....|+|.+++++.|..+++. ..+|.+.... .++=+||+++|..
T Consensus 386 ~V~vdGsv~~~p~f~~~l~~~l~~l~~~~~~~~~~~~v~~~~~~---dgsg~GAAl~aa~ 442 (457)
T 2yhx_A 386 HIAAXGSXRSYSGFSXNSATXNXNIYGWPQSAXXSKPIXITPAI---DGXGAASXVIXSI 442 (457)
T ss_dssp EEEEESTTTTSTTHHHHHHHHHHHHHCCCCSSGGGSSEEEEECC---CTTTHHHHHHHHH
T ss_pred EEEEECCcccCchHHHHHHHHHHHhhCcccccccCcceEEEECC---CchhhhHHHHHHH
Confidence 4666777866899999999999988643 3467777764 3677999998765
No 56
>3qbx_A Anhydro-N-acetylmuramic acid kinase; acetate and sugar kinases, HSP70, actin superfamily, anhydro-N-actetylmuramic acid binding; HET: AH0; 2.10A {Pseudomonas aeruginosa} PDB: 3qbw_A*
Probab=29.42 E-value=24 Score=33.49 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=21.4
Q ss_pred cCeEEecCCCCCcChHHHHHHhhc
Q 013888 353 ESIILTGGSTLFPRFAERLERELR 376 (434)
Q Consensus 353 ~nIiltGG~s~~~G~~~RL~~eL~ 376 (434)
..|++|||++.=|-+.+||++.|.
T Consensus 285 ~~v~vcGGGa~N~~Lm~~L~~~l~ 308 (371)
T 3qbx_A 285 EEVLVCGGGAFNTALMKRLAMLMP 308 (371)
T ss_dssp CEEEEESGGGGCHHHHHHHHHHCT
T ss_pred ceEEEECCccCcHHHHHHHHHhCC
Confidence 469999999999999999998873
No 57
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Probab=29.11 E-value=40 Score=30.93 Aligned_cols=59 Identities=10% Similarity=-0.023 Sum_probs=38.3
Q ss_pred HHHHHhhhcCCceeeeccccccccccccccCCCCCCCCCCcEEEEecCCCceEEEeccCceeccc
Q 013888 112 TDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNY 176 (434)
Q Consensus 112 l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~ 176 (434)
+.+.+=+.|++| +++.+++-+++++.......+ ..+.+.|-+|.+ .-..-|.+|.++..
T Consensus 99 l~~~l~~~~~~p-v~v~NDanaaa~~e~~~~~~~----~~~~~~v~~GtG-iG~gii~~G~l~~G 157 (310)
T 3htv_A 99 LADKLENTLNCP-VEFSRDVNLQLSWDVVENRLT----QQLVLAAYLGTG-MGFAVWMNGAPWTG 157 (310)
T ss_dssp HHHHHHHHHTSC-EEEEEHHHHHHHHHHHHTTCT----TSCEEEEEESSS-EEEEEEETTEEECC
T ss_pred HHHHHHHHhCCC-EEEeeHHHHHHHHHHhhcccC----CceEEEEEecee-EEEEEEECCEEeec
Confidence 445566677898 788888877765321100122 567788889864 55566779998764
No 58
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3
Probab=28.65 E-value=41 Score=32.91 Aligned_cols=50 Identities=22% Similarity=0.379 Sum_probs=35.3
Q ss_pred eEEecCCC-CCcChHHHHHHhhcccCCCCceEEEecCCCCCccccchhhhhcCc
Q 013888 355 IILTGGST-LFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLASS 407 (434)
Q Consensus 355 IiltGG~s-~~~G~~~RL~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasila~l 407 (434)
|.+.||.. ..|.|.+++++.|..++....+|.+... ..++.+||+++|..
T Consensus 396 V~i~Ggv~~~~~~~~~~l~~~l~~~~~~~~~i~~~l~---~dgs~iGAAllA~~ 446 (451)
T 1bdg_A 396 VGVDGSLYKFHPKFCERMTDMVDKLKPKNTRFCLRLS---EDGSGKGAAAIAAS 446 (451)
T ss_dssp EEEESHHHHHCTTHHHHHHHHHHHHSCTTCEEEEEEC---TTHHHHHHHHHHTT
T ss_pred EEEeCchhcCchhHHHHHHHHHHHHhCCCCcEEEEEC---CCccHHHHHHHHHH
Confidence 33445542 5799999999999887543456666643 55889999998754
No 59
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Probab=26.86 E-value=21 Score=32.51 Aligned_cols=56 Identities=11% Similarity=-0.052 Sum_probs=34.6
Q ss_pred cEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCCCCCCcEEEEecCCC
Q 013888 95 SLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFS 161 (434)
Q Consensus 95 ~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~~tglVVDiG~~ 161 (434)
.+-+..|-..+......+.+.+=+ +++| +++.++.-++++... ...++++|-+|.+
T Consensus 62 ~igi~~~G~~~~~~~~~l~~~l~~-~~~p-v~v~ND~~aaa~~e~---------~~~~~v~l~~GTG 117 (299)
T 2e2o_A 62 VVGMGVAGLDSKFDWENFTPLASL-IAPK-VIIQHDGVIALFAET---------LGEPGVVVIAGTG 117 (299)
T ss_dssp EEEEEETTCCSHHHHHHHHHHHTT-SSSE-EEEEEHHHHHHHHHH---------TTSCEEEEEESSS
T ss_pred EEEEEcCCCCchhHHHHHHHHHHh-CCCC-EEEeCcHHHHHhhcc---------CCCCeEEEEecCC
Confidence 455666655433333344444434 6765 778888888888321 1457888999987
No 60
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=22.58 E-value=66 Score=32.88 Aligned_cols=45 Identities=18% Similarity=0.083 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCc
Q 013888 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFK 123 (434)
Q Consensus 73 d~~e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~ 123 (434)
|.++.|=+|+|. .+++||||+-..+++....++++++|-|.||=.
T Consensus 236 ~v~~~I~~~AF~------~s~yPvilslE~Hc~~~qQ~~ma~~~~~~~gd~ 280 (624)
T 1djx_A 236 DVLRAIRDYAFK------ASPYPVILSLENHCSLEQQRVMARHLRAILGPI 280 (624)
T ss_dssp HHHHHHHHHTTT------SCSSCEEEEEEEECCHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhccc------CCCCCEEEEecccCCHHHHHHHHHHHHHHHhhh
Confidence 556666677764 478999999999999999999999998888753
No 61
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5
Probab=22.22 E-value=3.1e+02 Score=24.44 Aligned_cols=89 Identities=11% Similarity=-0.064 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHhhccCCCCCCCC---cEEEeccCCCCHHHHHHHHHHHhhhc--CCceeeeccccccccccccccCCCCC
Q 013888 72 SDLQRDIWAHLFSSLLHISPSAS---SLLLTEPLFALPSIQRATDELVFEDF--NFKSLFVADPPSLVHLYEASRRPYGL 146 (434)
Q Consensus 72 ~d~~e~il~~~~~~~L~~~~~~~---~vll~e~~~~~~~~re~l~e~lfE~~--~~~~v~~~~~~~ls~~~~~~~~~~g~ 146 (434)
|+.+...++.++.+ .+.++.+- .+-+..|-......... +=+.+ ++| +++.++.-++++.. .+
T Consensus 53 ~~~l~~~i~~~l~~-~~~~~~~i~~~~igig~pG~v~~~~~~~----l~~~~~~~~p-v~v~NDa~aaa~ge-----~~- 120 (305)
T 1zc6_A 53 WQAVLSTLEAAFQQ-AGLPAAPASACAIGLGLSGVHNRQWAGE----FESQAPGFAR-LSLATDGYTTLLGA-----HG- 120 (305)
T ss_dssp HHHHHHHHHHHHHH-TTCCCCCGGGEEEEEEESCCCTTSHHHH----HHHTCCCCSE-EEEECHHHHHHHHH-----TT-
T ss_pred HHHHHHHHHHHHHh-cCCChhhhccceEEEEecCCCchHHHHH----HHHhCCCCce-EEEECCHHHHHHhh-----cC-
Confidence 45555666666643 34444442 35566665433222111 22234 344 88899999988832 23
Q ss_pred CCCCCcEEEEecCCCceEEEeccCceecc
Q 013888 147 LSETQCSLVVDCGFSFTHAAPVFQNFTVN 175 (434)
Q Consensus 147 ~~~~~tglVVDiG~~~t~v~pV~dG~~~~ 175 (434)
..++++|-+|.+..-..-+.+|....
T Consensus 121 ---~~~~v~v~~GTGigg~~i~~~G~~~~ 146 (305)
T 1zc6_A 121 ---GQPGIIVALGTGSIGEALYPDGSHRE 146 (305)
T ss_dssp ---TSSEEEEEESSSEEEEEECTTSCEEE
T ss_pred ---CCCeEEEEecCCeEEEEEeCCCcEEE
Confidence 46788899998764333334887543
No 62
>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, shewanella one MR-1, protein structure initiative; 2.30A {Shewanella oneidensis}
Probab=21.08 E-value=38 Score=32.11 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=20.9
Q ss_pred cCeEEecCCCCCcChHHHHHHhh
Q 013888 353 ESIILTGGSTLFPRFAERLEREL 375 (434)
Q Consensus 353 ~nIiltGG~s~~~G~~~RL~~eL 375 (434)
..|++|||++.=|-+.+||++.|
T Consensus 291 ~~v~vcGGGa~N~~Lm~~L~~~l 313 (370)
T 3cqy_A 291 GELFVCGGGAFNAELMQRLAALL 313 (370)
T ss_dssp EEEEEESGGGGCHHHHHHHHHHC
T ss_pred CEEEEECCCcCCHHHHHHHHHhC
Confidence 36999999999999999999887
Done!