Query 013889
Match_columns 434
No_of_seqs 278 out of 2046
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 08:24:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013889.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013889hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02856 fumarylacetoacetase 100.0 3E-105 7E-110 818.2 41.5 418 3-434 5-424 (424)
2 TIGR01266 fum_ac_acetase fumar 100.0 8E-103 2E-107 799.7 38.6 413 5-433 1-415 (415)
3 KOG2843 Fumarylacetoacetase [C 100.0 4.4E-88 9.5E-93 645.0 20.2 414 4-433 1-417 (420)
4 COG0179 MhpD 2-keto-4-pentenoa 100.0 6.5E-57 1.4E-61 440.0 20.6 215 114-432 47-265 (266)
5 TIGR02303 HpaG-C-term 4-hydrox 100.0 9E-52 2E-56 401.2 22.9 216 109-431 26-244 (245)
6 KOG1535 Predicted fumarylaceto 100.0 8.7E-47 1.9E-51 347.2 16.6 200 116-387 2-206 (217)
7 PRK15203 4-hydroxyphenylacetat 100.0 5.2E-45 1.1E-49 379.1 21.4 198 128-431 6-205 (429)
8 PRK10691 hypothetical protein; 100.0 3.2E-44 6.9E-49 343.2 21.4 197 128-430 20-219 (219)
9 PRK15203 4-hydroxyphenylacetat 100.0 2.5E-43 5.4E-48 366.5 22.1 207 119-432 215-425 (429)
10 PRK12764 hypothetical protein; 100.0 1.4E-41 3.1E-46 359.1 21.4 209 120-432 16-229 (500)
11 PF01557 FAA_hydrolase: Fumary 100.0 7.6E-41 1.6E-45 318.8 15.6 212 128-430 3-218 (218)
12 TIGR02305 HpaG-N-term 4-hydrox 100.0 1.1E-39 2.5E-44 308.8 19.9 200 128-429 4-205 (205)
13 TIGR03220 catechol_dmpE 2-oxop 99.9 1.1E-21 2.4E-26 191.9 16.3 170 173-389 72-249 (255)
14 PRK11342 mhpD 2-keto-4-penteno 99.8 5.2E-20 1.1E-24 180.7 15.2 170 182-431 85-261 (262)
15 PF09298 FAA_hydrolase_N: Fuma 99.8 4.2E-19 9.1E-24 151.9 6.5 105 18-122 1-107 (107)
16 TIGR02312 HpaH 2-oxo-hepta-3-e 99.7 5.2E-16 1.1E-20 152.9 16.0 175 172-391 76-262 (267)
17 COG3970 Fumarylacetoacetate (F 99.5 3.4E-13 7.4E-18 131.8 13.2 185 174-432 170-356 (379)
18 TIGR03218 catechol_dmpH 4-oxal 99.4 8.3E-12 1.8E-16 122.9 16.4 149 213-392 105-260 (263)
19 COG3971 2-keto-4-pentenoate hy 99.2 2.1E-10 4.6E-15 110.8 11.2 150 213-393 102-259 (264)
20 COG3802 GguC Uncharacterized p 98.0 2.5E-05 5.5E-10 75.6 9.6 167 176-430 144-321 (333)
21 PF11010 DUF2848: Protein of u 97.9 0.00018 3.9E-09 67.5 13.1 155 171-386 27-182 (194)
22 PF10370 DUF2437: Domain of un 87.2 0.46 1E-05 35.1 2.2 26 20-47 1-26 (50)
23 PRK06488 sulfur carrier protei 63.5 31 0.00066 26.4 6.3 19 328-351 6-24 (65)
24 cd05790 S1_Rrp40 S1_Rrp40: Rrp 44.5 61 0.0013 26.8 5.4 48 359-411 5-60 (86)
25 smart00652 eIF1a eukaryotic tr 37.6 52 0.0011 26.9 4.0 16 397-412 40-55 (83)
26 TIGR03220 catechol_dmpE 2-oxop 35.7 40 0.00086 33.1 3.6 22 398-427 232-253 (255)
27 TIGR00008 infA translation ini 35.6 61 0.0013 25.7 3.9 16 397-412 41-56 (68)
28 PRK12442 translation initiatio 33.7 61 0.0013 27.0 3.8 31 377-412 28-58 (87)
29 PRK08582 hypothetical protein; 32.6 57 0.0012 29.2 3.8 65 356-423 1-72 (139)
30 cd05793 S1_IF1A S1_IF1A: Trans 32.4 70 0.0015 25.8 3.9 16 397-412 35-50 (77)
31 COG0361 InfA Translation initi 31.3 54 0.0012 26.5 3.0 15 398-412 44-58 (75)
32 PF01176 eIF-1a: Translation i 30.5 36 0.00077 26.3 1.8 15 397-411 38-52 (65)
33 cd05694 S1_Rrp5_repeat_hs2_sc2 27.7 89 0.0019 24.6 3.8 60 358-420 2-64 (74)
34 cd04456 S1_IF1A_like S1_IF1A_l 26.9 1E+02 0.0023 24.9 4.0 16 397-412 35-50 (78)
35 COG1096 Predicted RNA-binding 26.5 2E+02 0.0042 27.4 6.3 54 357-410 7-71 (188)
36 PRK04012 translation initiatio 25.9 1E+02 0.0022 26.2 4.0 16 397-412 56-71 (100)
37 cd03701 IF2_IF5B_II IF2_IF5B_I 23.9 1E+02 0.0022 25.7 3.5 19 354-372 23-41 (95)
38 cd01764 Urm1 Urm1-like ubuitin 22.2 2.5E+02 0.0055 23.3 5.7 58 343-410 30-88 (94)
39 COG0776 HimA Bacterial nucleoi 21.2 72 0.0016 26.9 2.1 25 399-433 35-59 (94)
40 PLN00208 translation initiatio 21.0 1.2E+02 0.0026 27.6 3.7 16 397-412 67-82 (145)
41 KOG1379 Serine/threonine prote 20.8 40 0.00087 34.5 0.6 45 328-373 198-257 (330)
42 PTZ00329 eukaryotic translatio 20.1 1.3E+02 0.0028 27.7 3.7 16 397-412 67-82 (155)
43 PRK05807 hypothetical protein; 20.0 1.3E+02 0.0028 26.8 3.7 51 356-411 1-59 (136)
No 1
>PLN02856 fumarylacetoacetase
Probab=100.00 E-value=3.2e-105 Score=818.21 Aligned_cols=418 Identities=74% Similarity=1.284 Sum_probs=384.8
Q ss_pred cccccccCCCCCCCCCCCCcEEEecCCCCCceeEEEECCeEEechhhhhcCCCCCCCccCCCccCcccHHHHHhcCchhH
Q 013889 3 LQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAW 82 (434)
Q Consensus 3 ~~s~~~~~~~~~f~~~~~p~g~fs~~~~~~~r~Gv~~gd~vvDL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 82 (434)
++|||+++++|||||+||||||||+.+++.+|+||+|||+|+||+++...+++.+.....+.+|.+++||+|+++|++.|
T Consensus 5 ~~swv~~~~~~~F~i~NlP~Gvfs~~~~~~~r~gvaigd~vldl~~~~~~~~~~~~~~~~~~~f~~~~Ln~f~alg~~~~ 84 (424)
T PLN02856 5 LKSFIDVAPDSDFPIQNLPYGVFSPESGATPRPGVAIGDYVLDLSALSEAGLFDGPLLSDSDCFSQPTLNKFMAMGRPAW 84 (424)
T ss_pred ccccccCCCCCCCCccccCeeEEECCCCCCceeEEEeCCEEEeHHHHHhcCCCCcccccccccccCcCHHHHHhCCHHHH
Confidence 57999999999999999999999998877999999999999999999887776553212347899999999999999999
Q ss_pred HHHHHHHHHHHhcCchhhhhhhhhcccccccCCCcEEeCCccccccceeeccHHHHHHhchhcCCCCCCCCCcchhhhhh
Q 013889 83 KEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQV 162 (434)
Q Consensus 83 ~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~v~ll~Pv~~~~~~~~~~~~~H~~~~g~~~~~~~~~~~p~~~~~~~~ 162 (434)
.++|+.|+.++.+....++++..+....++|+++|+|++|+.+++|+||+||++|+.|+|+.|++.+++++|+|
T Consensus 85 ~~~R~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~v~l~~P~~~~~~~df~~~~~Ha~n~g~~fr~~~~~l~p~~------ 158 (424)
T PLN02856 85 KEARSTLQRLLSADEPALRDNSELRKKAFHPMSDVEMLLPAVIGDYTDFFSSREHATNVGTMFRGPENALNPNW------ 158 (424)
T ss_pred HHHHHHHHHHhhcCCcccccchhhhccceeehhhceEcCCCccceEEEEecHHHHHHHhhhhccCCccCCCccc------
Confidence 99999999999877665555556666778999999999999999999999999999999999987777788999
Q ss_pred ccccCCCCCCCceEEeCCCCeeeeCCCeeeCCCCCCCCCCC-CCCCCCCCCCceecEEEEEEEcCCCCCCCCCCHhHHhh
Q 013889 163 YRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGN-SPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAAD 241 (434)
Q Consensus 163 ~~~~p~~~~~~P~~f~k~~ssvvg~g~~I~~P~~~~~~~~~-~~~~~~~s~~lDyE~ELavVIGk~~~~g~~i~~eeA~d 241 (434)
++.|++|+|++|||+++|++|++|.+|..+... ..|.|++++++|||+|||+||||++++|++|++++|++
T Consensus 159 --------~~~Pv~y~gr~sSvv~sg~~I~rP~gq~~~~~~~~~p~f~~s~~lDyE~ELavVIGk~~~~g~~I~~~~A~d 230 (424)
T PLN02856 159 --------LHLPIGYHGRASSVVPSGTDIRRPRGQLHPNDGSSRPYFGPSAKLDFELEMAAFVGPGNELGKPIPVNEAKD 230 (424)
T ss_pred --------ccCCCEEcCCCceEEcCCCceeCCCCCccCCCCCCCCcccCcCceEEEEEEEEEECcCccccCCCCHHHHHh
Confidence 899999999999999999999999988654222 34889999999999999999999988899999999999
Q ss_pred ceeEEEEEeccchhhHhhhhcCCCCCcccccCCCCCCCccccccccCCCcCCCCCCCCCCCccccccCCceeeEEEEEEE
Q 013889 242 HIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQI 321 (434)
Q Consensus 242 ~I~Gytl~ND~SaRd~Q~~e~~~lg~~~~Ksfdt~lGPwivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~ 321 (434)
||||||++|||||||+|.|||.++||++||+|+|+|||||||.|++++|++..|++++..+|||++.+..+++|+|+|++
T Consensus 231 ~IfGytl~ND~SARDiQ~wE~~plgpf~gKsF~t~igPwIVt~dal~p~r~~~~~~dp~~l~yl~~~~~~~~~i~l~v~v 310 (424)
T PLN02856 231 HIFGLVLMNDWSARDIQKWEYVPLGPFLGKSFATTISPWIVTLDALEPFRCDAPAQDPPPLPYLAEKNRKSYDISLEVAI 310 (424)
T ss_pred hheEEEEeeechhhhhhhhhcccCCcccccCCCCCCcCeEEcccccccccccccccCcccccccccccccceeEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999998999999999999999889999999988
Q ss_pred eeCCCCCCeEEEecchhhhccCHHHHHHHHHHcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceeeCCC-CCcc
Q 013889 322 KPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGF-TRKF 400 (434)
Q Consensus 322 ~~~~~~NGe~~q~~~t~~m~~s~~~lIa~~~S~~~tL~pGDlI~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~-~~~~ 400 (434)
+.+++.||+++|++|+++|||+++|||+|++|++|+|+|||||+||||+|+++.+.||++|++++|+.++++.+| .++|
T Consensus 311 ~~nG~~ng~~~q~~nt~~M~ws~~qlIah~~s~g~tL~pGDLi~TGTpsG~~~~~~G~llElt~~G~~p~~l~~g~~r~f 390 (424)
T PLN02856 311 KPAGQSKASVVCRSNFKHLYWTLAQQLAHHTVNGCNLRPGDLLGSGTISGPEPGSLGCLLELTWAGSREVSLEGGTRRKF 390 (424)
T ss_pred eeCCcccceeEEcCCHHHcCCCHHHHHHHHHhCCeecCCCCEEEeCCCCCCccCCCCCEEEEEeCCccceEeccCCcccc
Confidence 655555889999999999999999999987799999999999999999999999999999999999999999988 7999
Q ss_pred CCCCCEEEEEEEEecCCceeeeeceeeEEeeCCC
Q 013889 401 LEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPSTP 434 (434)
Q Consensus 401 L~~GD~V~~~~~~~~~~~~~g~G~~~~~v~~~~~ 434 (434)
|+|||+|+++++|.++|.+||||+|+++|+||.+
T Consensus 391 L~dGD~V~l~g~~~~~g~~igfG~~~g~v~pa~~ 424 (424)
T PLN02856 391 LEDGDEVVLSGWCKGDGYRVGFGTCSGKVLPALP 424 (424)
T ss_pred CCCCCEEEEEEEECCCCccEeeeeeeeEEecCCC
Confidence 9999999999999999999999999999999975
No 2
>TIGR01266 fum_ac_acetase fumarylacetoacetase. This enzyme catalyzes the final step in the breakdown of tyrosine or phenylalanine to fumarate and acetoacetate.
Probab=100.00 E-value=7.8e-103 Score=799.71 Aligned_cols=413 Identities=61% Similarity=1.091 Sum_probs=379.0
Q ss_pred cccccCCCCCCCCCCCCcEEEecCCCCCceeEEEECCeEEechhhhhcCCCCCC-CccCCCccCcccHHHHHhcCchhHH
Q 013889 5 SFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGP-ILKDSDCFLQPNLNKFLSLGRPAWK 83 (434)
Q Consensus 5 s~~~~~~~~~f~~~~~p~g~fs~~~~~~~r~Gv~~gd~vvDL~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~ 83 (434)
|||+++++|||||+|||||+|++.+++.+|+|+++||.|+||+++.. ++.+. ....+.+|.+++||+|+++|++.|.
T Consensus 1 swv~~~~~~~f~i~nlP~gvf~~~~~~~pR~gv~igd~vlDL~~~~~--~~~~~~~~~~~~~f~~~~Ln~f~alg~~~~~ 78 (415)
T TIGR01266 1 SFVPVAENSDFPIQNLPYGVFSTQANSSPRIGVAIGDQILDLSVIAH--LFTGPALSKHQHVFDQSTLNAFMALGRPAWK 78 (415)
T ss_pred CccCCCCCCCCCccccCeEEEECCCCCCceeEEEECCEEEeHHHHHh--hhcCccccccccccCCCCHHHHHhCCHHHHH
Confidence 89999999999999999999999877789999999999999999875 34332 1223468889999999999999999
Q ss_pred HHHHHHHHHHhcCchhhhhhhhhcccccccCCCcEEeCCccccccceeeccHHHHHHhchhcCCCCCCCCCcchhhhhhc
Q 013889 84 EARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVY 163 (434)
Q Consensus 84 ~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~v~ll~Pv~~~~~~~~~~~~~H~~~~g~~~~~~~~~~~p~~~~~~~~~ 163 (434)
++|+.|+.++......++++..+.+..++|+++|+||+|+.+++|+||+||++|++|+|+.|++.+++++|||
T Consensus 79 ~~R~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~v~l~lP~~i~dytDf~~~~~Ha~n~g~~fr~~~~~l~p~~------- 151 (415)
T TIGR01266 79 EARARLQNLLSASQARLRDNAALRQRALTPQAEATMHLPAQIGDYTDFYSSIQHATNVGIMFRGKENALLPNW------- 151 (415)
T ss_pred HHHHHHHHHhhcCCccccccccccccceeehhHceecCCccchhhhhhhchHHHHHHHHhhccCCCCCCCccc-------
Confidence 9999999999877666666666666789999999999999999999999999999999999988788899999
Q ss_pred cccCCCCCCCceEEeCCCCeeeeCCCeeeCCCCCCCCCCCCCCCCCCCCCceecEEEEEEEcCCCCCCCCCCHhHHhhce
Q 013889 164 RVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHI 243 (434)
Q Consensus 164 ~~~p~~~~~~P~~f~k~~ssvvg~g~~I~~P~~~~~~~~~~~~~~~~s~~lDyE~ELavVIGk~~~~g~~i~~eeA~d~I 243 (434)
++.|++|+|++|||+++|++|++|.+|..+.+...|.|++++.+|||+||++||||++++|++|++++|++||
T Consensus 152 -------~~~Pv~y~g~~sSvv~sg~~I~rP~gq~~~~~~~~p~f~ps~~lD~E~ELavvIGk~~~~g~~vs~e~A~~~I 224 (415)
T TIGR01266 152 -------KHLPVGYHGRASSIVVSGTPLRRPMGQTLPDNAKPPVFGPCKLLDMELEMAFFVGPGNRLGEPIPISKAEEHI 224 (415)
T ss_pred -------ccCCcEeccCCceEEcCCCceeCCCccccCCcccCCcccccCceEEEEEEEEEECcCcccCCcCCHHHHHhhh
Confidence 8999999999999999999999999986554444588999999999999999999998889999999999999
Q ss_pred eEEEEEeccchhhHhhhhcCCCCCcccccCCCCCCCccccccccCCCcCCCCCCCCCCCccccccCCceeeEEEEEEEee
Q 013889 244 FGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKP 323 (434)
Q Consensus 244 ~Gytl~ND~SaRd~Q~~e~~~lg~~~~Ksfdt~lGPwivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~ 323 (434)
||||++|||||||+|.|||+++||++||+|+|+|||||||.|+|+++++..+++|+..+|||++.++..++|+|++++|+
T Consensus 225 fGy~l~ND~SARDiQ~wE~~plgpf~~KsF~tsigPwIVT~daL~p~r~~~~~~dp~pl~yL~~~~~~~~~l~l~v~vng 304 (415)
T TIGR01266 225 FGVVLMNDWSARDIQAWEYVPLGPFLAKSFGTTISPWVVPIDALEPFRVPNPKQDPKPLPYLCHDAPYTFDINLEVSLKG 304 (415)
T ss_pred eEEEEeeEcchhhhhhhhccccCccccccCCCCCcCeEeccccccccccccccccccccccccccCCCcceeEEEEEEec
Confidence 99999999999999999999999999999999999999999999999998888899999999999888889999998876
Q ss_pred CCCCCCeEEEecchhhhccCHHHHHHHHHHcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceeeCCC-CCccCC
Q 013889 324 AGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGF-TRKFLE 402 (434)
Q Consensus 324 ~~~~NGe~~q~~~t~~m~~s~~~lIa~~~S~~~tL~pGDlI~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~-~~~~L~ 402 (434)
+++.+.+++|++|+++|+|+++|||+|+++++|+|+|||||+||||+|+++.+.||++|++++|+.++.+.+| .++||+
T Consensus 305 e~~~~~~~~q~~~~~~M~ws~~qlIah~S~~g~tL~pGDLi~TGTpsG~~~~~~G~~lE~t~~g~~~v~l~~g~~r~fL~ 384 (415)
T TIGR01266 305 EGMSEPATICRSNFKHMYWTMLQQLAHHSVNGCNLRPGDLLGSGTISGSEPGSFGSMLELSWKGKKPIDVGQGETRTFLE 384 (415)
T ss_pred CcCcccceEEcCCHHhcCcCHHHHHHHHhcCCcccCCCCEEEeCCCCCCcccCCCcEEEEEeCCeeeeecCCCCCCCCCC
Confidence 5444556999999999999999999999558999999999999999999999999999999999999999888 789999
Q ss_pred CCCEEEEEEEEecCCceeeeeceeeEEeeCC
Q 013889 403 DGDEVTFTGFCKGNGYTVGFGTCSGKIVPST 433 (434)
Q Consensus 403 ~GD~V~~~~~~~~~~~~~g~G~~~~~v~~~~ 433 (434)
|||+|+|+++|.++|++||||||+++|+||.
T Consensus 385 dGD~V~~~~~~~~~g~~igfGe~~g~i~pa~ 415 (415)
T TIGR01266 385 DGDEVILRGHCQGEGYRVGFGECAGKVLPAL 415 (415)
T ss_pred CCCEEEEEEEECCCCCcEeeeeeeeEEecCC
Confidence 9999999999999999999999999999984
No 3
>KOG2843 consensus Fumarylacetoacetase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.4e-88 Score=645.00 Aligned_cols=414 Identities=58% Similarity=1.036 Sum_probs=392.8
Q ss_pred ccccccCCCCCCCCCCCCcEEEecCCCCCceeEEEECCeEEechhhhhcCCCCCCC-ccCCCccCcccHHHHHhcCchhH
Q 013889 4 QSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPI-LKDSDCFLQPNLNKFLSLGRPAW 82 (434)
Q Consensus 4 ~s~~~~~~~~~f~~~~~p~g~fs~~~~~~~r~Gv~~gd~vvDL~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~ 82 (434)
+|+++++.+++|||||+|+|+||+..+..+++|+++||.|++|+.+.. ++++|. -.+++.|.+++||+|+.++.++|
T Consensus 1 ~sf~~v~~~sdfpi~nlpygvfst~~d~~~~igvaIgdqIl~l~~i~~--lf~gp~l~~hQdvf~q~TLN~fMgL~~~AW 78 (420)
T KOG2843|consen 1 KSFVSVPQNSDFPIQNLPYGVFSTKADSSRHIGVAIGDQILNLAEIAN--LFDGPQLKAHQDVFKQSTLNAFMGLDFEAW 78 (420)
T ss_pred CCccccCCCCCCccccccccccccccCCCCcceeehhHHHHHHHHHHH--hhcCcchHHHHHHhhhhhHHHHhCCCHHHH
Confidence 588999999999999999999999999999999999999999998876 466654 36788999999999999999999
Q ss_pred HHHHHHHHHHHhcCchhhhhhhhhcccccccCCCcEEeCCccccccceeeccHHHHHHhchhcCCCCCCCCCcchhhhhh
Q 013889 83 KEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQV 162 (434)
Q Consensus 83 ~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~v~ll~Pv~~~~~~~~~~~~~H~~~~g~~~~~~~~~~~p~~~~~~~~ 162 (434)
.++|..+|.+++.+.+.++++..+.+-+.++-++.+||+|-++++|+|||.+.+|+.|+|..||++++++.|||
T Consensus 79 ~eaR~~~Q~LLs~~~a~Lrdn~~Lr~~a~v~Qs~atmHLPAqIGDYTDFYSSihHATNVGIMFRgkeNALMPNW------ 152 (420)
T KOG2843|consen 79 DEARSQTQKLLSKGCAELRDNVDLRAVAIVPQSEATMHLPAQIGDYTDFYSSIHHATNVGIMFRGKENALMPNW------ 152 (420)
T ss_pred HHHHHHHHHHhhcchhhhccccceeeeeeeccccceeccchhhcchhhhhhhhhhccceeEEEeccccccCCcc------
Confidence 99999999999999888999888888899999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCceEEeCCCCeeeeCCCeeeCCCCCCCCCCCCCCCCCCCCCceecEEEEEEEc-CCCCCCCCCCHhHHhh
Q 013889 163 YRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVG-PGNELGKPIDVNEAAD 241 (434)
Q Consensus 163 ~~~~p~~~~~~P~~f~k~~ssvvg~g~~I~~P~~~~~~~~~~~~~~~~s~~lDyE~ELavVIG-k~~~~g~~i~~eeA~d 241 (434)
.+.|+.|++++||||.+|++|+||-||..|.+...|.|++|+.+|+|+|+|++|| +.+..|.+|+.++|++
T Consensus 153 --------~hLPVGYHGRASSvVVSGTpirRP~GQtkpddae~PvfGacKLlDfELEMAFFvGgpgN~LGepipi~kA~~ 224 (420)
T KOG2843|consen 153 --------RHLPVGYHGRASSVVVSGTPIRRPLGQTKPDDAEKPVFGACKLLDFELEMAFFVGGPGNQLGEPIPIDKAWK 224 (420)
T ss_pred --------ccccccccCceeeEEEcCCcccCcccCCCCCCCCCCcccchhhccceeeeeeEecCCccccCCccchhhhhh
Confidence 8999999999999999999999999987666656699999999999999999998 6677899999999999
Q ss_pred ceeEEEEEeccchhhHhhhhcCCCCCcccccCCCCCCCccccccccCCCcCCCCCCCCCCCccccccCCceeeEEEEEEE
Q 013889 242 HIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQI 321 (434)
Q Consensus 242 ~I~Gytl~ND~SaRd~Q~~e~~~lg~~~~Ksfdt~lGPwivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~ 321 (434)
+|||++++|||||||||.|||+|||||.+|||.|+++||+|+.++|.+|-...|.+||..+|||.+..|-+++|.|+|.+
T Consensus 225 ~iFG~vLMNDWSARDIQkWEYVPLGPFlaKsfgTTvSPWVVp~~AL~Pf~v~Np~QdP~plpYL~hd~PftfDINL~Vsl 304 (420)
T KOG2843|consen 225 NIFGFVLMNDWSARDIQKWEYVPLGPFLAKSFGTTVSPWVVPTAALKPFVVDNPPQDPEPLPYLRHDIPFTFDINLEVSL 304 (420)
T ss_pred heeeEEEecccchhhcccceeecccchhhhhcccccccceeeHhhcCccccCCCCCCCCCCcccccCCCceeeeeeEEEe
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred eeCCCCCCeEEEecchhhhccCHHHHHHHHHHcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceeeCCC-CCcc
Q 013889 322 KPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGF-TRKF 400 (434)
Q Consensus 322 ~~~~~~NGe~~q~~~t~~m~~s~~~lIa~~~S~~~tL~pGDlI~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~-~~~~ 400 (434)
++++.....++.++|.++|||++-|.++|++-.+|.|+|||++++||.+|..+...|+++|++|.|.+++++.+| .++|
T Consensus 305 kpeg~~~~a~icKsNFKhlYWT~lQQlaHHtVnGCNLRpGDLlaSGTiSGpep~~yGSmLELsWkGtK~~~lg~g~tRKF 384 (420)
T KOG2843|consen 305 KPEGQNEDALICKSNFKHLYWTPLQQLAHHTVNGCNLRPGDLLASGTISGPEPDSYGSMLELSWKGTKTLELGGGKTRKF 384 (420)
T ss_pred ccCCccccceeecccchhhhhhHHHHhhhcccccccCCccceeccccccCCCCcchhhhhhhhhcCceeeecCCchhhhh
Confidence 999865568899999999999999999999999999999999999999999999999999999999999999988 7999
Q ss_pred CCCCCEEEEEEEEecCCceeeeeceeeEEeeCC
Q 013889 401 LEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPST 433 (434)
Q Consensus 401 L~~GD~V~~~~~~~~~~~~~g~G~~~~~v~~~~ 433 (434)
|+|||+|.+++.|+.+|.+||||+|+++|+||.
T Consensus 385 L~DgDEVii~G~CeknG~RIGFGeC~GkVLPA~ 417 (420)
T KOG2843|consen 385 LQDGDEVIIRGHCEKNGLRIGFGECVGKVLPAH 417 (420)
T ss_pred hhcCCeEEEEeeecCCceEEecccccccccccc
Confidence 999999999999999999999999999999984
No 4
>COG0179 MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6.5e-57 Score=440.04 Aligned_cols=215 Identities=31% Similarity=0.395 Sum_probs=193.5
Q ss_pred CCCcEEeCCcccc--ccceeeccHHHHHHhchhcCCCCCCCCCcchhhhhhccccCCCCCCCceEEeCCCCeeeeCCCee
Q 013889 114 MGKVEMLLPMEIG--DYTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDI 191 (434)
Q Consensus 114 l~~v~ll~Pv~~~--~~~~~~~~~~H~~~~g~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~P~~f~k~~ssvvg~g~~I 191 (434)
+.++++++|+.++ .|+++.||.+|++|++... + . +..|++|+|+++++++++++|
T Consensus 47 ~~~~~~~~~~~~~~ki~cvG~NY~~Ha~E~~~~~---~---~-----------------p~~P~~F~K~~~a~~~~~~~i 103 (266)
T COG0179 47 LAEVRLLAPLPPPGKIVCVGRNYADHAEEMGKDR---D---I-----------------PEEPVFFLKPPTAVIGPNDPI 103 (266)
T ss_pred ccccccccCCCCCCcEEEEechHHHHHHHhccCC---C---C-----------------CCCCeeeccCcccccCCCCce
Confidence 6788999999855 3788999999999998531 1 2 455999999999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCCCCceecEEEEEEEcCCCCCCCCCCHhHHhhceeEEEEEeccchhhHhhhhcCCCCCcccc
Q 013889 192 VRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGK 271 (434)
Q Consensus 192 ~~P~~~~~~~~~~~~~~~~s~~lDyE~ELavVIGk~~~~g~~i~~eeA~d~I~Gytl~ND~SaRd~Q~~e~~~lg~~~~K 271 (434)
.+|.. +.++|||+||||||||+ +++|++++|++||+|||++||||+||+|.+++ ..+|++||
T Consensus 104 ~~P~~--------------s~~~dyE~ELavvIGk~---~~~v~~e~A~d~I~GYti~nD~T~Rd~Q~~~~-~~~w~~aK 165 (266)
T COG0179 104 PLPPG--------------SKGLDYEGELAVVIGKR---GKDVSVEDALDYIAGYTIGNDVTARDLQMEEK-GRPWTRAK 165 (266)
T ss_pred ECCCC--------------CCCcceeEEEEEEECCc---CCCCCHHHHHhhheEEeeeeecchhcchhhhh-cCCccccc
Confidence 99986 78999999999999999 99999999999999999999999999997643 45899999
Q ss_pred cCCCC--CCCccccccccCCCcCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeEEEecchhhhccCHHHHHH
Q 013889 272 SFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLA 349 (434)
Q Consensus 272 sfdt~--lGPwivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~~lIa 349 (434)
+|||+ +||||+|.+++.+ ++++.|+++| |||++|++||++|+|++++||+
T Consensus 166 ~~d~~~Pigp~iv~~~e~~d--------------------~~~l~l~~~v--------NGe~~Q~g~t~~Mi~~i~~lI~ 217 (266)
T COG0179 166 GFDTFAPVGPWIVTKDEISD--------------------PQNLPLSLRV--------NGEVRQRGNTSDMIFSIPELIA 217 (266)
T ss_pred ccCCCCCceeEEeccccCCC--------------------CccceEEEEE--------CCEEEecCcHHHcccCHHHHHH
Confidence 99994 9999999998765 3568899998 9999999999999999999999
Q ss_pred HHHHcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceeeCCCCCccCCCCCEEEEEEEEecCCceeeeeceeeEE
Q 013889 350 HHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKI 429 (434)
Q Consensus 350 ~~~S~~~tL~pGDlI~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~v 429 (434)
|+ |+.|||+|||||+||||+||+ ||++||+|+++ ++ |||+|+|+|
T Consensus 218 ~l-S~~~tL~pGDvI~TGTP~Gvg--------------------------~l~~GD~v~~~--ie------giG~l~n~v 262 (266)
T COG0179 218 YL-SRFMTLEPGDVILTGTPSGVG--------------------------FLKPGDVVEVE--IE------GIGELENTV 262 (266)
T ss_pred HH-hCCcccCCCCEEEeCCCCCcc--------------------------cCCCCCEEEEE--ec------ceeEEEEEE
Confidence 98 999999999999999999975 78999999998 77 999999999
Q ss_pred eeC
Q 013889 430 VPS 432 (434)
Q Consensus 430 ~~~ 432 (434)
+.+
T Consensus 263 ~~~ 265 (266)
T COG0179 263 VKE 265 (266)
T ss_pred eeC
Confidence 875
No 5
>TIGR02303 HpaG-C-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit. This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related N-terminal domain (TIGR02305). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).
Probab=100.00 E-value=9e-52 Score=401.19 Aligned_cols=216 Identities=24% Similarity=0.347 Sum_probs=192.1
Q ss_pred cccccCCCcEEeCCccccc-cceeeccHHHHHHhchhcCCCCCCCCCcchhhhhhccccCCCCCCCceEEeCCCCeeeeC
Q 013889 109 KSLVPMGKVEMLLPMEIGD-YTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLPIAYHGRASSVVIS 187 (434)
Q Consensus 109 ~~~~~l~~v~ll~Pv~~~~-~~~~~~~~~H~~~~g~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~P~~f~k~~ssvvg~ 187 (434)
+..+++++|+|++|+.+++ |+...||.+|++|++.. . ++.|++|+|+++|++++
T Consensus 26 ~~~~~~~~v~ll~P~~p~ki~~vg~Ny~~h~~e~~~~--------~-----------------p~~P~~F~Kp~~s~~g~ 80 (245)
T TIGR02303 26 GRALPPEQVTWLPPFEPGTIFALGLNYADHASELGFS--------P-----------------PEEPLVFLKGNNTLTGH 80 (245)
T ss_pred CCccccccceEcCCCCCCeEEEEeCCHHHHHHHhCCC--------C-----------------CCCCEEEEcCcceeeCC
Confidence 4458999999999998654 66677899999998631 2 34599999999999999
Q ss_pred CCeeeCCCCCCCCCCCCCCCCCCCCCceecEEEEEEEcCCCCCCCCCCHhHHhhceeEEEEEeccchhhHhhhhcCCCCC
Q 013889 188 GTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGP 267 (434)
Q Consensus 188 g~~I~~P~~~~~~~~~~~~~~~~s~~lDyE~ELavVIGk~~~~g~~i~~eeA~d~I~Gytl~ND~SaRd~Q~~e~~~lg~ 267 (434)
|++|.+|.. +..+|||+||++||||+ ++++++++|++||+|||++||||+||+|...+ .+|
T Consensus 81 ~~~i~~P~~--------------~~~ld~E~EL~vvigk~---~~~v~~~~A~~~I~Gytv~nD~T~Rd~q~~~~--~~~ 141 (245)
T TIGR02303 81 KGVTYRPKD--------------VRFMHYECELAVVVGKT---AKNVKREDAMDYVLGYTIANDYAIRDYLENYY--RPN 141 (245)
T ss_pred CCcEECCCC--------------CCceeEEEEEEEEECCC---CCCCCHHHHhhheeEEEEEeecchHHHHhhhc--CCc
Confidence 999999975 67899999999999999 99999999999999999999999999997544 479
Q ss_pred cccccCCCC--CCCccccccccCCCcCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeEEEecchhhhccCHH
Q 013889 268 FLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLT 345 (434)
Q Consensus 268 ~~~Ksfdt~--lGPwivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~ 345 (434)
.++|+||++ +|||++|++++.+ +.++.|++++ ||+++|++++++|+|+++
T Consensus 142 ~~aK~~D~~~plGp~i~t~~~~~d--------------------~~~l~i~l~v--------NGe~~q~g~t~~ml~~v~ 193 (245)
T TIGR02303 142 LRVKNRDTFTPIGPWIVDKEDVED--------------------PMNLWLRTYV--------NGELTQEGNTSDMIFSVA 193 (245)
T ss_pred ccccCCCCCEeeCCcCCCHHHcCC--------------------ccccEEEEEE--------CCEEEEecCHHHhccCHH
Confidence 999999995 9999999998854 2558888888 999999999999999999
Q ss_pred HHHHHHHHcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceeeCCCCCccCCCCCEEEEEEEEecCCceeeeece
Q 013889 346 QQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTC 425 (434)
Q Consensus 346 ~lIa~~~S~~~tL~pGDlI~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~ 425 (434)
+||+|+ |+.++|+|||||+||||.|++ .|++||+|+++ ++ |+|++
T Consensus 194 ~Li~~l-s~~~tL~pGDvIlTGTp~g~~--------------------------~l~~GD~v~~~--i~------glG~l 238 (245)
T TIGR02303 194 ELIEYL-SEFMTLEPGDVILTGTPKGLS--------------------------DVKPGDVVRLE--IE------GVGAL 238 (245)
T ss_pred HHHHHH-hcCCCcCCCCEEEcCCCCCCe--------------------------EcCCCCEEEEE--Ec------CceeE
Confidence 999998 899999999999999999864 47899999998 77 99999
Q ss_pred eeEEee
Q 013889 426 SGKIVP 431 (434)
Q Consensus 426 ~~~v~~ 431 (434)
+|+|+.
T Consensus 239 ~n~v~~ 244 (245)
T TIGR02303 239 ENPIVS 244 (245)
T ss_pred EEEEEe
Confidence 999974
No 6
>KOG1535 consensus Predicted fumarylacetoacetate hydralase [General function prediction only]
Probab=100.00 E-value=8.7e-47 Score=347.16 Aligned_cols=200 Identities=26% Similarity=0.270 Sum_probs=172.7
Q ss_pred CcEEeCCcccccc--ceeeccHHHHHHhchhcCCCCCCCCCcchhhhhhccccCCCCCCCceEEeCCCCeeeeCCCeeeC
Q 013889 116 KVEMLLPMEIGDY--TDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVR 193 (434)
Q Consensus 116 ~v~ll~Pv~~~~~--~~~~~~~~H~~~~g~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~P~~f~k~~ssvvg~g~~I~~ 193 (434)
++.++.|+..+.+ +..+||.+|++|.+.. . ++.|++|.|++||++++|++|..
T Consensus 2 ~~~~~~~~~~~~KIVcVg~NY~dh~~E~~~~--------~-----------------PkeP~~FlKptss~v~~g~~i~~ 56 (217)
T KOG1535|consen 2 DVMLLRPLKWPTKIVCVGRNYADHCKELNNP--------V-----------------PKEPFFFLKPTSSIVGPGGPIVI 56 (217)
T ss_pred ccchhhhhhcCCeEEEecccHHHHHHHhCCC--------C-----------------CCCCeEEeecchhhcCCCCceEc
Confidence 4567788877752 3466799999997532 1 57799999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCceecEEEEEEEcCCCCCCCCCCHhHHhhceeEEEEEeccchhhHhhhhcC-CCCCccccc
Q 013889 194 PRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYV-PLGPFLGKS 272 (434)
Q Consensus 194 P~~~~~~~~~~~~~~~~s~~lDyE~ELavVIGk~~~~g~~i~~eeA~d~I~Gytl~ND~SaRd~Q~~e~~-~lg~~~~Ks 272 (434)
|.+ ++.+|||+||++||||+ |+++++.+|++||+||+++.|+||||+|...+. +++|+.||+
T Consensus 57 p~~--------------~~~lh~EvEL~vVigK~---~~~v~~~~amd~v~Gy~valDmtARd~q~~ak~~g~pw~l~K~ 119 (217)
T KOG1535|consen 57 PPG--------------SKGLHHEVELAVVIGKK---GSSVKKKDAMDYVGGYAVALDMTARDWQDEAKKKGLPWTLGKG 119 (217)
T ss_pred CCC--------------cCccceeEEEEEEeccc---cccCChhhcccccccEEEEeeccchhhhhhhhhcCCCeeeccc
Confidence 986 78999999999999999 999999999999999999999999999986543 699999999
Q ss_pred CCCC--CCCccccccccCCCcCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeEEEecchhhhccCHHHHHHH
Q 013889 273 FGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAH 350 (434)
Q Consensus 273 fdt~--lGPwivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~~lIa~ 350 (434)
|||+ +| -+++.+.+.| ++++.|.|+| ||+++|+++|++|+|+++.+|+|
T Consensus 120 ~Dtf~Pis-~~vpk~~v~D--------------------p~nl~L~l~V--------nG~~~Q~g~T~~mifkip~li~~ 170 (217)
T KOG1535|consen 120 FDTFTPIS-AIVPKEKVPD--------------------PHNLWLWLRV--------NGETRQTGNTSLMIFKIPDLISR 170 (217)
T ss_pred cCccCccc-ccccHHHCCC--------------------ccceEEEEEE--------ccEEEecCchhhheecHHHHHHH
Confidence 9995 99 5667777765 4678888888 99999999999999999999999
Q ss_pred HHHcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecC
Q 013889 351 HTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNG 387 (434)
Q Consensus 351 ~~S~~~tL~pGDlI~TGTp~Gvg~~~~G~~le~~~~G 387 (434)
+ |+.+||+|||||+||||.|||++.+||.+++.+.+
T Consensus 171 i-s~~~tL~~GDvILTGTP~GVg~v~~Gd~i~~ei~~ 206 (217)
T KOG1535|consen 171 L-SQIMTLEPGDVILTGTPEGVGEVKPGDVIQCELLE 206 (217)
T ss_pred H-hhheeecCCCEEEecCCCccccccCCCEEEecccc
Confidence 8 89999999999999999999976555555444433
No 7
>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional
Probab=100.00 E-value=5.2e-45 Score=379.09 Aligned_cols=198 Identities=19% Similarity=0.206 Sum_probs=166.7
Q ss_pred cceeeccHHHHHHhchhcCCCCCCCCCcchhhhhhccccCCCCCCCceEEeCCCCeeeeCCCeeeCCCCCCCCCCCCCCC
Q 013889 128 YTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPP 207 (434)
Q Consensus 128 ~~~~~~~~~H~~~~g~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~P~~f~k~~ssvvg~g~~I~~P~~~~~~~~~~~~~ 207 (434)
|+...||++|+.+++..+........ ++.|++|+|+++|++++|++|.+|.+
T Consensus 6 ~~vg~Ny~~~~~~~~~~~~~~~~~~~-----------------p~~P~~F~Kp~~al~g~~~~i~~P~~----------- 57 (429)
T PRK15203 6 FAVALNHRSQLDAWQEAFQQSPYKAP-----------------PKTAVWFIKPRNTVIRCGEPIPFPQG----------- 57 (429)
T ss_pred EEEeCchHHHHHhhhhhccccccCCC-----------------CCCCEEEecCcceeeCCCCcEECCCC-----------
Confidence 45567799999987643210000001 46699999999999999999999964
Q ss_pred CCCCCCceecEEEEEEEcCCCCCCCCCCHhHHhhceeEEEEEeccchhhHhhhhcCCCCCcccccCCCC--CCCcccccc
Q 013889 208 FGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLD 285 (434)
Q Consensus 208 ~~~s~~lDyE~ELavVIGk~~~~g~~i~~eeA~d~I~Gytl~ND~SaRd~Q~~e~~~lg~~~~Ksfdt~--lGPwivt~d 285 (434)
.++|||+||++||||+ |++|++++|++||+|||++||+|+||+|.. .+|.++|+|||+ +||||++.+
T Consensus 58 ----~~~~~E~EL~vvIGk~---~~~v~~~~A~~~V~Gyti~nD~t~rd~q~~----~~~~~~K~~D~~~p~Gp~i~~~~ 126 (429)
T PRK15203 58 ----EKVLSGATVALIVGKT---ATKVREEDAAEYIAGYALANDVSLPEESFY----RPAIKAKCRDGFCPIGETVALSN 126 (429)
T ss_pred ----CCceEEEEEEEEECCc---cCCCCHHHHhhheeEEEEEEEeechhhccc----CCcccccCCCCCcccCCeEECCC
Confidence 3699999999999999 999999999999999999999999999852 368999999995 999996421
Q ss_pred ccCCCcCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeEEEecchhhhccCHHHHHHHHHHcCcccCCCCEEE
Q 013889 286 ALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLG 365 (434)
Q Consensus 286 el~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~~lIa~~~S~~~tL~pGDlI~ 365 (434)
+.++.|+++| ||+++|++|+++|+|+++++|+|+ |+++||+|||||+
T Consensus 127 ------------------------~~~l~i~~~v--------NGe~~Q~~~t~~Mi~~~~~lis~l-S~~~tL~pGDvI~ 173 (429)
T PRK15203 127 ------------------------VDNLTIYTEI--------NGRPADHWNTADLQRNAAQLLSAL-SEFATLNPGDAIL 173 (429)
T ss_pred ------------------------ccceEEEEEE--------CCEEEecCCHHHcCCCHHHHHHHH-hCCCCcCCCCEEE
Confidence 2458888888 999999999999999999999998 9999999999999
Q ss_pred cCCCCCCccCCCCcEEEEEecCccceeeCCCCCccCCCCCEEEEEEEEecCCceeeeeceeeEEee
Q 013889 366 TGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVP 431 (434)
Q Consensus 366 TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~v~~ 431 (434)
||||+|++ +||+||+|+++ ++ |+|+++|+|+.
T Consensus 174 TGTP~g~~--------------------------~l~~GD~v~~~--i~------gig~l~n~v~~ 205 (429)
T PRK15203 174 LGTPQARV--------------------------EIQPGDRVRVL--AE------GFPPLENPVVD 205 (429)
T ss_pred cCCCCCce--------------------------ECCCCCEEEEE--Ee------CeeEEEEEEEE
Confidence 99999854 57888888887 66 88888888864
No 8
>PRK10691 hypothetical protein; Provisional
Probab=100.00 E-value=3.2e-44 Score=343.20 Aligned_cols=197 Identities=20% Similarity=0.236 Sum_probs=170.9
Q ss_pred cceeeccHHHHHHhchhcCCCCCCCCCcchhhhhhccccCCCCCCCceEEeCCCCeeeeCCCeeeCCCCCCCCCCCCCCC
Q 013889 128 YTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPP 207 (434)
Q Consensus 128 ~~~~~~~~~H~~~~g~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~P~~f~k~~ssvvg~g~~I~~P~~~~~~~~~~~~~ 207 (434)
++...||.+|+++++.. .| +.|++|.|+++++++++++|.+|.+
T Consensus 20 ~~vg~Ny~~h~~e~~~~--------~p-----------------~~P~~F~K~~~~~~~~~~~i~~P~~----------- 63 (219)
T PRK10691 20 VCVGSNYAKHIKEMGSA--------TP-----------------EEPVLFIKPETALCDLRQPLAIPKD----------- 63 (219)
T ss_pred EEEecCHHHHHHHhCCC--------CC-----------------CCCEEEECCcceeeCCCCcEECCCC-----------
Confidence 56677899999998631 23 4599999999999999999999975
Q ss_pred CCCCCCceecEEEEEEEcCCCCCCCCCCHhHHhhceeEEEEEeccchhhHhhhhcC-CCCCcccccCCCC--CCCccccc
Q 013889 208 FGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYV-PLGPFLGKSFGTT--LSPWIVTL 284 (434)
Q Consensus 208 ~~~s~~lDyE~ELavVIGk~~~~g~~i~~eeA~d~I~Gytl~ND~SaRd~Q~~e~~-~lg~~~~Ksfdt~--lGPwivt~ 284 (434)
+.++|||+|||+||||+ ++++++++|++||+||+++||||+||+|.+... ..+|.++|+||++ +|||+++.
T Consensus 64 ---~~~ld~E~ELavvigk~---~~~v~~~~a~~~V~gyt~~nDvt~r~~q~~~~~~~~~~~~~K~~D~~~~~gp~i~~~ 137 (219)
T PRK10691 64 ---FGSVHHEVELAVLIGAT---LRQATEEHVRKAIAGYGVALDLTLRDLQGKMKKAGQPWEKAKAFDNSCPISGFIPVA 137 (219)
T ss_pred ---CCCeeEEEEEEEEECCC---CCCCCHHHHhhhheEEEEEEEeEhhhhhhhhccccCCccccccCCCCcCcCCcEEch
Confidence 67899999999999999 899999999999999999999999999987543 3568899999995 89999875
Q ss_pred cccCCCcCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeEEEecchhhhccCHHHHHHHHHHcCcccCCCCEE
Q 013889 285 DALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLL 364 (434)
Q Consensus 285 del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~~lIa~~~S~~~tL~pGDlI 364 (434)
+...+ +.++.+++++ ||+++|++++++|+|++.++|+|+ |+.++|+|||||
T Consensus 138 ~~~~d--------------------~~~l~i~l~v--------NG~~~q~g~~~~mi~~~~~lia~l-s~~~tL~aGDvI 188 (219)
T PRK10691 138 EFTGD--------------------PQNTTLGLSV--------NGEVRQQGNTADMIHPIVPLIAYM-SRFFTLRAGDVV 188 (219)
T ss_pred hccCC--------------------ccccEEEEEE--------CCEEEEecCHHHhccCHHHHHHHH-hcCCccCCCCEE
Confidence 43222 2457788888 999999999999999999999998 899999999999
Q ss_pred EcCCCCCCccCCCCcEEEEEecCccceeeCCCCCccCCCCCEEEEEEEEecCCceeeeeceeeEEe
Q 013889 365 GTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIV 430 (434)
Q Consensus 365 ~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~v~ 430 (434)
+||||+|++ .|++||+|+++ ++ |+ +|+++|+
T Consensus 189 ~TGTp~g~~--------------------------~l~~GD~v~~~--i~------gl-~~~~~~~ 219 (219)
T PRK10691 189 LTGTPEGVG--------------------------PLQSGDELTVT--FN------GH-SLTTRVL 219 (219)
T ss_pred EcCCCCCCE--------------------------ECCCCCEEEEE--Ee------CE-EEEEEeC
Confidence 999999864 47899999888 67 88 9998874
No 9
>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional
Probab=100.00 E-value=2.5e-43 Score=366.51 Aligned_cols=207 Identities=21% Similarity=0.275 Sum_probs=181.7
Q ss_pred EeCCccccc--cceeeccHHHHHHhchhcCCCCCCCCCcchhhhhhccccCCCCCCCceEEeCCCCeeeeCCCeeeCCCC
Q 013889 119 MLLPMEIGD--YTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRG 196 (434)
Q Consensus 119 ll~Pv~~~~--~~~~~~~~~H~~~~g~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~P~~f~k~~ssvvg~g~~I~~P~~ 196 (434)
+++|+.++. |+...||.+|++|++.. . ++.|++|+|+++++++++++|.+|.+
T Consensus 215 ~~~p~~~~~ki~~vg~Ny~~h~~e~~~~--------~-----------------p~~P~~F~K~~~s~~g~~~~i~~P~~ 269 (429)
T PRK15203 215 FPTPPHPHGTLFALGLNYADHASELEFK--------P-----------------PEEPLVFLKAPNTLTGDNQTSVRPNN 269 (429)
T ss_pred cccCCCCCCeEEEEcCCHHHHHHHhCCC--------C-----------------CCCCEEEEcCcceeeCCCCCEECCCC
Confidence 667777654 55666799999998531 2 35599999999999999999999975
Q ss_pred CCCCCCCCCCCCCCCCCceecEEEEEEEcCCCCCCCCCCHhHHhhceeEEEEEeccchhhHhhhhcCCCCCcccccCCCC
Q 013889 197 QFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT 276 (434)
Q Consensus 197 ~~~~~~~~~~~~~~s~~lDyE~ELavVIGk~~~~g~~i~~eeA~d~I~Gytl~ND~SaRd~Q~~e~~~lg~~~~Ksfdt~ 276 (434)
+.++|||+|||+||||+ +++++++||++||+||+++||+|+||+|...+ ..|+++|+||++
T Consensus 270 --------------~~~ld~E~ELavVigk~---~~~v~~~ea~~~V~Gy~~~nD~t~rd~q~~~~--~~w~~~K~~d~~ 330 (429)
T PRK15203 270 --------------IEYMHYEAELVVVIGKQ---ARKVSEADAMDYVAGYTVCNDYAIRDYLENYY--RPNLRVKSRDGL 330 (429)
T ss_pred --------------CCceEEEEEEEEEECCC---CCCCCHHHHhhheeEEEEEEeccchhhhhhhc--CCceEeccCCCC
Confidence 67899999999999999 89999999999999999999999999996543 468999999995
Q ss_pred --CCCccccccccCCCcCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeEEEecchhhhccCHHHHHHHHHHc
Q 013889 277 --LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTIN 354 (434)
Q Consensus 277 --lGPwivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~~lIa~~~S~ 354 (434)
+|||++|.|++.+ +.++.+++++ ||+++|++++++|+|++.++|+|+ |+
T Consensus 331 ~plGp~~v~~d~~~d--------------------~~~l~i~l~v--------NG~~vq~g~t~~m~~~v~~li~~l-s~ 381 (429)
T PRK15203 331 TPILSTIVPKEAIPD--------------------PHNLTLRTFV--------NGELRQQGTTADLIFSVPFLIAYL-SE 381 (429)
T ss_pred cCCCCCEeChhhcCC--------------------ccceEEEEEE--------CCEEEEeeCHHHhccCHHHHHHHH-hc
Confidence 9999999988754 3568888888 999999999999999999999998 89
Q ss_pred CcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceeeCCCCCccCCCCCEEEEEEEEecCCceeeeeceeeEEeeC
Q 013889 355 GCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 432 (434)
Q Consensus 355 ~~tL~pGDlI~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~v~~~ 432 (434)
.++|+|||+|+||||.|++ +|++||+|+++ ++ |+|+++|+|+.+
T Consensus 382 ~~tL~aGDvI~TGTp~g~~--------------------------~l~pGD~v~~~--i~------glG~l~n~v~~~ 425 (429)
T PRK15203 382 FMTLNPGDMIATGTPKGLS--------------------------DVVPGDEVVVE--VE------GVGRLVNRIVSE 425 (429)
T ss_pred CCCcCCCCEEEeCCCCCCe--------------------------ECCCCCEEEEE--Ec------CceEEEEEEEec
Confidence 9999999999999999864 47899999988 77 999999999744
No 10
>PRK12764 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-41 Score=359.09 Aligned_cols=209 Identities=22% Similarity=0.297 Sum_probs=176.0
Q ss_pred eCCccccc-cceeeccHHHHHHhchhcCCCCCCCCCcchhhhhhccccCCCCCCCceEEeCCCCeeeeCCCeeeCCCCCC
Q 013889 120 LLPMEIGD-YTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQF 198 (434)
Q Consensus 120 l~Pv~~~~-~~~~~~~~~H~~~~g~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~P~~f~k~~ssvvg~g~~I~~P~~~~ 198 (434)
..|..+.+ +....||.+|+++++. . ++.|++|+|++++++++|++|.+|.+
T Consensus 16 ~~~~~p~kIi~vg~Ny~~ha~e~~~---------~-----------------p~~P~~f~K~~~sl~~~g~~I~~p~~-- 67 (500)
T PRK12764 16 PLLARPGKVIAVHLNYPSRAAQRGR---------T-----------------PAQPSYFLKPSSSLALSGGTVERPAG-- 67 (500)
T ss_pred CCCCCCCcEEEECCCCHHHHHHhCC---------C-----------------CCCCEEEEeccceEeCCCCeEECCCC--
Confidence 34444433 4445679999998752 1 34599999999999999999999975
Q ss_pred CCCCCCCCCCCCCCCceecEEEEEEEcCCCCCCCCCCHhHHhhceeEEEEEeccchhhHhhhhcCCCCCcccccCCCC--
Q 013889 199 APSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT-- 276 (434)
Q Consensus 199 ~~~~~~~~~~~~s~~lDyE~ELavVIGk~~~~g~~i~~eeA~d~I~Gytl~ND~SaRd~Q~~e~~~lg~~~~Ksfdt~-- 276 (434)
+..+|||+||++||||+ +++++++||++||+||+++||+|+||+|..++ ..|+++|+||++
T Consensus 68 ------------~~~l~~E~ELavVIgr~---~~~v~~eea~~~I~Gyt~~nDvt~rD~~~~d~--~~~~~~K~~Dg~~p 130 (500)
T PRK12764 68 ------------TELLAFEGEIALVIGRP---ARRVSPEDAWSHVAAVTAANDLGVYDLRYADK--GSNLRSKGGDGFTP 130 (500)
T ss_pred ------------CCceeEEEEEEEEECCc---CCCCCHHHHHhhheEEEEecceeeehhhhhhc--CCcccccccCccEe
Confidence 67899999999999999 89999999999999999999999999997654 256899999995
Q ss_pred CCCccccccccCCCcCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeEEEecchhhhccCHHHHHHHHHHcCc
Q 013889 277 LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGC 356 (434)
Q Consensus 277 lGPwivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~~lIa~~~S~~~ 356 (434)
+|||+++.++++. .+++|+++| ||+++|++++++|+|++++||+|+ |+.+
T Consensus 131 lGp~iv~~~~~d~---------------------~~l~i~~~v--------NGe~~Q~g~t~dmi~~v~~LI~~l-S~~~ 180 (500)
T PRK12764 131 IGPALISARGVDP---------------------AQLRVRTWV--------NGELVQDDTTEDLLFPFAQLVADL-SQLL 180 (500)
T ss_pred cCCCccCccccCc---------------------cceEEEEEE--------CCEEEEeccHHHhcCCHHHHHHHH-hcCC
Confidence 9999999998842 568888888 999999999999999999999998 8999
Q ss_pred ccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceeeCCCCCccCCCCCEEEEEEEEec--CCceeeeeceeeEEeeC
Q 013889 357 NLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKG--NGYTVGFGTCSGKIVPS 432 (434)
Q Consensus 357 tL~pGDlI~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~~~~~L~~GD~V~~~~~~~~--~~~~~g~G~~~~~v~~~ 432 (434)
||+|||||+||||.|++ +|++||+|+++ +++ +|.. -||+|+|+|+..
T Consensus 181 tL~pGDvIlTGTp~g~~--------------------------~l~pGD~v~~~--i~gi~~~~~-~~G~L~n~v~~~ 229 (500)
T PRK12764 181 TLEEGDVILTGTPAGSS--------------------------VAAPGDVVEVE--VDAPADGAP-STGRLVTRVVEG 229 (500)
T ss_pred CcCCCCEEEeCCCCCCe--------------------------ecCCCCEEEEE--EcCCccCCC-CcceEEEEEEeC
Confidence 99999999999999854 57889999888 661 1111 249999999764
No 11
>PF01557 FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase family Mutations in Swiss:P16930 cause inherited tyrosinemia type I.; InterPro: IPR002529 Fumarylacetoacetase (3.7.1.2 from EC; also known as fumarylacetoacetate hydrolase or FAH) catalyses the hydrolytic cleavage of a carbon-carbon bond in fumarylacetoacetate to yield fumarate and acetoacetate as the final step in phenylalanine and tyrosine degradation []. This is an essential metabolic function in humans, the lack of FAH causing type I tyrosinaemia, which is associated with liver and kidney abnormalities and neurological disorders [, ]. The enzyme mechanism involves a catalytic metal ion, a Glu/His catalytic dyad, and a charged oxyanion hole []. FAH folds into two domains: an N-terminal domain SH3-like beta-barrel, and a C-terminal with an unusual fold consisting of three layers of beta-sheet structures []. This entry represents the C-terminal domain of fumarylacetoacetase, as well as other domains that share a homologous sequence, including: 5-carboxymethyl-2-hydroxymuconate delta-isomerase (CHM isomerase; 5.3.3.10 from EC), which catalyses the conversion of 5-carboxymethyl-2-hydroxymuconate to 5-carboxy-2-oxohept-3-enedioate []. 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase (OPET decarboxylase; 4.1.1.68 from EC), which catalyses the conversion of 5-oxopent-3-ene-1,2,5-tricarboxylate to 2-oxohept-3-enedioate and carbon dioxide. Bifunctional enzyme HpcE (OPET decarboxylase 4.1.1.68 from EC/HHDD isomerase 5.3.3.10 from EC), which is a duplication consisting of a tandem repeat of two FAH C-terminal-like domains. This enzyme is responsible for the degradation of 4-hydroxyphenylacetate, a product of tyrosine and phenylalanine metabolism also released by lignin catabolism []. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1SAW_B 3LZK_B 3S52_B 2WQT_Q 1SV6_C 2DFU_B 1WZO_D 3QDF_A 1GTT_B 1I7O_C ....
Probab=100.00 E-value=7.6e-41 Score=318.84 Aligned_cols=212 Identities=30% Similarity=0.373 Sum_probs=178.4
Q ss_pred cceeeccHHHHHHhchhcCCCCCCCCCcchhhhhhccccCCCCCCCceEEeCCCCeeeeCCCeeeCCCCCCCCCCCCCCC
Q 013889 128 YTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPP 207 (434)
Q Consensus 128 ~~~~~~~~~H~~~~g~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~P~~f~k~~ssvvg~g~~I~~P~~~~~~~~~~~~~ 207 (434)
|..+.+|.+|++++++.. .+ .|.+ + .+..|++|.|++++++++|++|.+|..
T Consensus 3 ~~~~~n~~~~~~~~~~~~--~~---~p~~-------~-----~~~~p~~~~~~~~~~~~~g~~i~~p~~----------- 54 (218)
T PF01557_consen 3 VGVGLNYTSHAEEAGAGD--VD---EPDY-------G-----VPVEPVFFMKPPSSLVGSGAPIPLPRG----------- 54 (218)
T ss_dssp EEEESEBHHHHHHTTTTC--SS---TTSE-------E-----CECSGEEEEEEGGGEEETTSEEEECTT-----------
T ss_pred EEEeEchHHHHHHhCcCC--CC---CCcc-------c-----cccCCeEEecCCceeecCCCceecCcc-----------
Confidence 456788999999987541 11 2322 0 045689999999999999999999975
Q ss_pred CCCCCCceecEEEEEEEcCCCCCCCCC-CHhHHhhceeEEEEEeccchhhHhhhhcCCCCCcccccCCCC--CCCccccc
Q 013889 208 FGPSQKLDFELEMAAVVGPGNELGKPI-DVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTL 284 (434)
Q Consensus 208 ~~~s~~lDyE~ELavVIGk~~~~g~~i-~~eeA~d~I~Gytl~ND~SaRd~Q~~e~~~lg~~~~Ksfdt~--lGPwivt~ 284 (434)
+..+|||+||+++|||+ ++++ +++||++||+||+++||||+|++|.+.+.+++|+.+|+|+++ +|||++++
T Consensus 55 ---~~~~~~E~Ela~vig~~---~~~~~~~~ea~~~i~g~~~~~d~~~r~~~~~~~~~~~~~~~k~~~~~~~~Gp~~v~~ 128 (218)
T PF01557_consen 55 ---SRRLDYEAELAFVIGRP---LRNVYTPEEALDAIAGYTPANDVTARDLQWRERPGLPWIADKSFDGSLVLGPWVVPP 128 (218)
T ss_dssp ---SSSEEEEEEEEEEESS----BSSTH-HHHHGGGEEEEEEEEEEEEHHHHHHHHHTHSSHHHHSSTTCEEEEEEEEEH
T ss_pred ---ccccCcceEEEEEEecC---CCCCCCHHHHHHHhhEEeeecccchhhhhhhhhcccchhhccCcCcceeeccccccc
Confidence 67899999999999998 8888 999999999999999999999999887755688999999985 99999999
Q ss_pred cccCCCcCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeEEEecchhhhccCHHHHHHHHHHcCcccCCCCEE
Q 013889 285 DALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLL 364 (434)
Q Consensus 285 del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~~lIa~~~S~~~tL~pGDlI 364 (434)
+++.++ .+++++|++ ||+++|++++++|+|++.++|+|+ |+.++|++||+|
T Consensus 129 ~~~~~~--------------------~~~~~~l~v--------nG~~~~~~~~~~~~~~~~~ll~~l-s~~~~L~aGdvI 179 (218)
T PF01557_consen 129 DELPDL--------------------RDLRLRLRV--------NGEVVQSGSTSDMLGDPAELLAWL-SRGLTLRAGDVI 179 (218)
T ss_dssp SSHSGT--------------------TSEEEEEEE--------TTEEEEEEEGGGBSSSHHHHHHHH-HTTS-B-TTEEE
T ss_pred ccccCc--------------------ceEEEEEEE--------CCEEEEeccchhHHhhHHHHHHHH-hCCCCCCcceEE
Confidence 998752 458888888 999999999999999999999996 899999999999
Q ss_pred EcCCCCCCccCCCCcEEEEEecCccceeeCCCCCccCCCCCEEEEEEEE-ecCCceeeeeceeeEEe
Q 013889 365 GTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFC-KGNGYTVGFGTCSGKIV 430 (434)
Q Consensus 365 ~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~~~~~L~~GD~V~~~~~~-~~~~~~~g~G~~~~~v~ 430 (434)
+||||+|++. . .++.+|++||+|+++ + + |||+++|+|+
T Consensus 180 ~TGt~~G~~~-------------~-------~~~~~l~~Gd~v~~~--~~~------glG~l~~~v~ 218 (218)
T PF01557_consen 180 LTGTPTGVGA-------------R-------PPPVPLQPGDRVEAE--IDE------GLGSLENTVA 218 (218)
T ss_dssp EEEESSTSEG-------------S-------SCCEEEBTT-EEEEE--EET------TTEEEEEEEE
T ss_pred EcCCcCCCCc-------------c-------cccccCCCCcEEEEE--EEC------CEeEEEEEEC
Confidence 9999998742 0 157899999999998 7 6 9999999985
No 12
>TIGR02305 HpaG-N-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit. This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related C-terminal domain (TIGR02303). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).
Probab=100.00 E-value=1.1e-39 Score=308.84 Aligned_cols=200 Identities=21% Similarity=0.232 Sum_probs=168.5
Q ss_pred cceeeccHHHHHHhchhcCCCCCCCCCcchhhhhhccccCCCCCCCceEEeCCCCeeeeCCCeeeCCCCCCCCCCCCCCC
Q 013889 128 YTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPP 207 (434)
Q Consensus 128 ~~~~~~~~~H~~~~g~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~P~~f~k~~ssvvg~g~~I~~P~~~~~~~~~~~~~ 207 (434)
|+...||.+|+++++..+........ ++.|++|+|++++++++|++|.+|..
T Consensus 4 ~~vg~ny~~h~~~~~~~~~~~~~~~~-----------------p~~P~~f~k~~~~~~~~g~~i~~p~~----------- 55 (205)
T TIGR02305 4 FGVALNYREQLDRLQEAFQQAPYKAP-----------------PKTPVLYIKPRNTHNGCGQPIPLPAG----------- 55 (205)
T ss_pred EEEeCcHHHHHHHhcccccccccCCC-----------------CCCCEEEEcCcceEeCCCCeEECCCC-----------
Confidence 34456799999998743211100011 45699999999999999999999874
Q ss_pred CCCCCCceecEEEEEEEcCCCCCCCCCCHhHHhhceeEEEEEeccchhhHhhhhcCCCCCcccccCCCC--CCCcccccc
Q 013889 208 FGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLD 285 (434)
Q Consensus 208 ~~~s~~lDyE~ELavVIGk~~~~g~~i~~eeA~d~I~Gytl~ND~SaRd~Q~~e~~~lg~~~~Ksfdt~--lGPwivt~d 285 (434)
+..++||+|||+||||+ ++++++++|++||+||+++||+|+|+.|.+. .|.++|+|+++ +||| ++.+
T Consensus 56 ---~~~~~~E~ELa~vigr~---~~~~~~~~a~~~v~g~~~~~dit~~~~~~~~----~~~~~k~~dg~~~lGp~-v~~~ 124 (205)
T TIGR02305 56 ---VEKLRSGATLALVVGRT---ACRVREEEALDYVAGYALVNDVSLPEDSYYR----PAIKAKCRDGFCPIGPE-VPLS 124 (205)
T ss_pred ---CCCccEEEEEEEEECCC---CCCCCHHHHHHhhheeEEeeeeehhhhhccC----cchhhcccCCccccCCc-ccHH
Confidence 56899999999999999 7899999999999999999999999987532 57889999995 9999 7777
Q ss_pred ccCCCcCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeEEEecchhhhccCHHHHHHHHHHcCcccCCCCEEE
Q 013889 286 ALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLG 365 (434)
Q Consensus 286 el~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~~lIa~~~S~~~tL~pGDlI~ 365 (434)
++.+ +.++.+++++ ||+++|++++++|+|++.+||+|+ |++++|+|||||+
T Consensus 125 ~~~d--------------------~~~~~~~l~v--------ng~~~~~g~~~~~~~~~~~li~~l-s~~~~L~aGdvI~ 175 (205)
T TIGR02305 125 AIGN--------------------PDELTIYTYI--------NGKPAQSNNTSNLVRSAAQLISEL-SEFMTLNPGDVLL 175 (205)
T ss_pred HcCC--------------------ccccEEEEEE--------CCEEEEeeCHHHhCcCHHHHHHHH-hCCCCcCCCCEEE
Confidence 7644 2557888888 999999999999999999999998 7899999999999
Q ss_pred cCCCCCCccCCCCcEEEEEecCccceeeCCCCCccCCCCCEEEEEEEEecCCceeeeeceeeEE
Q 013889 366 TGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKI 429 (434)
Q Consensus 366 TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~v 429 (434)
||||.|+. +|++||+|+++ ++ |+|+++|+|
T Consensus 176 TGT~~g~~--------------------------~l~~Gd~v~~~--i~------glG~l~n~v 205 (205)
T TIGR02305 176 LGTPEARV--------------------------EVGPGDRVRVE--AE------GLGELENPV 205 (205)
T ss_pred eCCCCCCe--------------------------ecCCCCEEEEE--Ec------CceeEEEeC
Confidence 99998743 57899999988 77 899999986
No 13
>TIGR03220 catechol_dmpE 2-oxopent-4-enoate hydratase. Members of this protein family are 2-oxopent-4-enoate hydratase, which is also called 2-hydroxypent-2,4-dienoate hydratase. It is closely related to another gene found in the same operon, 4-oxalocrotonate decarboxylase, with which it interacts closely.
Probab=99.87 E-value=1.1e-21 Score=191.87 Aligned_cols=170 Identities=16% Similarity=0.081 Sum_probs=120.7
Q ss_pred CceEEeCCCCeeeeCCCeeeCCCCCCCCCCCCCCCCCCCCCceecEEEEEEEcCCCCCCCCCCHhHHh---hceeEEEEE
Q 013889 173 LPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA---DHIFGVMLM 249 (434)
Q Consensus 173 ~P~~f~k~~ssvvg~g~~I~~P~~~~~~~~~~~~~~~~s~~lDyE~ELavVIGk~~~~g~~i~~eeA~---d~I~Gytl~ 249 (434)
.|++=.-..+.+..+|.+|.++.. ..+++|+||+|+|||+++ +++++++|++ ++|+++.-+
T Consensus 72 ~P~~g~l~~~~~~~~g~~i~~~~~---------------~~~~vE~Elafvlg~~l~-~~~~t~~ev~~ai~~v~~~~El 135 (255)
T TIGR03220 72 QPDFGYLLDGMVYNEGEPIPTDTL---------------IQPKAEGEIAFVLKKDLM-GPGVTAADVLAATECVMPCFEI 135 (255)
T ss_pred CCcEEEeeccccccCCCeeccccC---------------ccceeeeEEEEEECCCCC-CCCCCHHHHHHHHhheeeeEEE
Confidence 354433345666677888877643 379999999999999976 5789999765 678888889
Q ss_pred eccchhhHhhhhcCCCCCcccccCCCCCCCccccccccCCCcCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCC
Q 013889 250 NDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDS 329 (434)
Q Consensus 250 ND~SaRd~Q~~e~~~lg~~~~Ksfdt~lGPwivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NG 329 (434)
||.+.||+|.. ..+..+|+.. -|. +|+.+++.+.. +.+...+.++|++ ||
T Consensus 136 ~D~r~~~~~~~----~~~~~Ad~~~--~~~-~V~g~~~~~~~---------------~~~l~~~~~~l~v--------nG 185 (255)
T TIGR03220 136 VDSRIRDWKIK----IQDTVADNAS--CGV-FVLGDTRVDPR---------------KLDLALCGMVLEK--------NG 185 (255)
T ss_pred cccccccCCCC----ccceeeecCC--cce-EEECCCcCCcc---------------ccChhhCceEEEE--------CC
Confidence 99999998752 2466787632 233 33333332210 0012345566777 99
Q ss_pred eEEEecchhhhccCHHHHHHHHHHc-----CcccCCCCEEEcCCCCCCccCCCCcEEEEEecCcc
Q 013889 330 CVVTRSNFKYLYWTLTQQLAHHTIN-----GCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQK 389 (434)
Q Consensus 330 e~~q~~~t~~m~~s~~~lIa~~~S~-----~~tL~pGDlI~TGTp~Gvg~~~~G~~le~~~~G~~ 389 (434)
+++|++++++|++++.++|+|+ ++ +++|+|||+|+|||++|+.++++||.++++++|.+
T Consensus 186 ~~~~~g~~~~~lg~p~~~l~~L-~~~l~~~g~~L~aGdiV~TGt~~g~~~v~~Gd~v~~~~~glG 249 (255)
T TIGR03220 186 EIVSTGAGAAALGSPVNAVAWL-ANTLGRLGIPLKAGEVILSGSLAALVPVKAGDNLRVSIGGIG 249 (255)
T ss_pred EEEeecchhhccCCHHHHHHHH-HHHHHHcCCCCCCCCEEECCCCCCCeeCCCCCEEEEEEcCCc
Confidence 9999999999999999999998 55 88999999999999999765544444444444444
No 14
>PRK11342 mhpD 2-keto-4-pentenoate hydratase; Provisional
Probab=99.83 E-value=5.2e-20 Score=180.74 Aligned_cols=170 Identities=16% Similarity=0.132 Sum_probs=130.9
Q ss_pred CeeeeCCCeeeCCCCCCCCCCCCCCCCCCCCCceecEEEEEEEcCCCCCCCCCCHhHHhhceeEEEEEeccchhhHhhhh
Q 013889 182 SSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWE 261 (434)
Q Consensus 182 ssvvg~g~~I~~P~~~~~~~~~~~~~~~~s~~lDyE~ELavVIGk~~~~g~~i~~eeA~d~I~Gytl~ND~SaRd~Q~~e 261 (434)
+.+..+|..+..+. .....+|+||+|++||+++ +..++++|+.++|.++..+.++-.++++.|.
T Consensus 85 ~~~~~~g~~~~~~~---------------~~~~~iE~Eiaf~l~~dl~-~~~~t~~ev~~ai~~v~paiEivdsr~~~~~ 148 (262)
T PRK11342 85 DMCYGDNEIIPFSR---------------VLQPRIEAEIALVLNRDLP-ATDITFDELYNAIEWVLPALEVVGSRIRDWS 148 (262)
T ss_pred hhhcCCCCeecccc---------------cCCcceeeEEEEEECCCCC-CCCCCHHHHHHhhceEeeeEEecCCcccCCC
Confidence 45556666665433 2357889999999999976 4678999999999999999999999998774
Q ss_pred cCCCCCcccccCCC---CCCCccccccccCCCcCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeEEEecchh
Q 013889 262 YVPLGPFLGKSFGT---TLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFK 338 (434)
Q Consensus 262 ~~~lg~~~~Ksfdt---~lGPwivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~ 338 (434)
. ......+.+... -+|+.+..+++++ ..++.+++++ ||+++|+++++
T Consensus 149 ~-~~~~~iAD~~~~~~~VlG~~~~~~~~~d---------------------~~~~~~~l~v--------ng~~~q~g~~~ 198 (262)
T PRK11342 149 I-QFVDTVADNASCGVYVIGGPAQRPAGLD---------------------LKNCAMKMTR--------NNEEVSSGRGS 198 (262)
T ss_pred C-chhheeecccccceEEECCCcCCcccCC---------------------hhhCEEEEEE--------CCEEEEEEcHH
Confidence 3 122234444433 2777766555442 2557788887 99999999999
Q ss_pred hhccCHHHHHHHHH----HcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceeeCCCCCccCCCCCEEEEEEEEe
Q 013889 339 YLYWTLTQQLAHHT----INGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCK 414 (434)
Q Consensus 339 ~m~~s~~~lIa~~~----S~~~tL~pGDlI~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~~~~~L~~GD~V~~~~~~~ 414 (434)
+|++++.++|+|++ +++++|+|||||+||||.|+ .++++||+|+++ ++
T Consensus 199 ~~lg~p~~~l~~L~~~l~~~g~~L~aGdvV~TGt~~~~--------------------------~~l~~Gd~v~~~--i~ 250 (262)
T PRK11342 199 ECLGHPLNAAVWLARKMASLGEPLRAGDIILTGALGPM--------------------------VAVNAGDRFEAH--IE 250 (262)
T ss_pred HhccCHHHHHHHHHHHHHHcCCCcCCCCEEEcCCCCCC--------------------------eeCCCCCEEEEE--EC
Confidence 99999999999862 44579999999999999764 467889998887 67
Q ss_pred cCCceeeeeceeeEEee
Q 013889 415 GNGYTVGFGTCSGKIVP 431 (434)
Q Consensus 415 ~~~~~~g~G~~~~~v~~ 431 (434)
|+|++++++.-
T Consensus 251 ------glG~v~~~~~~ 261 (262)
T PRK11342 251 ------GIGSVAATFSS 261 (262)
T ss_pred ------CCceEEEEEec
Confidence 89999888753
No 15
>PF09298 FAA_hydrolase_N: Fumarylacetoacetase N-terminal; InterPro: IPR015377 Fumarylacetoacetase (3.7.1.2 from EC; also known as fumarylacetoacetate hydrolase or FAH) catalyses the hydrolytic cleavage of a carbon-carbon bond in fumarylacetoacetate to yield fumarate and acetoacetate as the final step in phenylalanine and tyrosine degradation []. This is an essential metabolic function in humans, the lack of FAH causing type I tyrosinaemia, which is associated with liver and kidney abnormalities and neurological disorders [, ]. The enzyme mechanism involves a catalytic metal ion, a Glu/His catalytic dyad, and a charged oxyanion hole []. FAH folds into two domains: an N-terminal domain SH3-like beta-barrel, and a C-terminal with an unusual fold consisting of three layers of beta-sheet structures []. This entry represents the N-terminal domain of fumarylacetoacetase.; GO: 0004334 fumarylacetoacetase activity, 0009072 aromatic amino acid family metabolic process; PDB: 1QCN_B 1QCO_B 2HZY_A 1QQJ_B 1HYO_A.
Probab=99.77 E-value=4.2e-19 Score=151.89 Aligned_cols=105 Identities=50% Similarity=0.870 Sum_probs=81.9
Q ss_pred CCCCcEEEecCCCCCceeEEEECCeEEechhhhhcCCCCCCC--ccCCCccCcccHHHHHhcCchhHHHHHHHHHHHHhc
Q 013889 18 QNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPI--LKDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSS 95 (434)
Q Consensus 18 ~~~p~g~fs~~~~~~~r~Gv~~gd~vvDL~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~~~~ 95 (434)
|||||||||+..++.+|+||+|||+|+||+++...+++.+.. .....+|.+++||+|+++|++.|.++|..|+++++.
T Consensus 1 qNLPfGVFst~~~~~pR~gvaIGd~VlDL~al~~~g~~~~~~~~~~~~~~f~~~tLN~fmalg~~~w~avR~~L~~lL~~ 80 (107)
T PF09298_consen 1 QNLPFGVFSTPDDPSPRVGVAIGDQVLDLSALAAAGLFDGPSLSPAAASAFAQPTLNDFMALGRPAWRAVRARLQELLSA 80 (107)
T ss_dssp TT--EEEEEESSEESEEEEEEETTEEEEHHHH--GGG--STTTTTG-GGGGGSSSSHHHHHC-HHHHHHHHHHHHHHHBT
T ss_pred CCCCcEEEecCCCCCCeeEEEECCEEEehHHHhhhcccCcccchhhhHhHhcCCCHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 799999999878889999999999999999998777776422 345788999999999999999999999999999985
Q ss_pred CchhhhhhhhhcccccccCCCcEEeCC
Q 013889 96 NEATLRDNANLRQKSLVPMGKVEMLLP 122 (434)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~l~~v~ll~P 122 (434)
..+...++....+..++|+++|+||+|
T Consensus 81 ~~~~~~~~~~~~~~~L~~~~~v~mhLP 107 (107)
T PF09298_consen 81 DNSELSDNQALVEPALVPQAEVTMHLP 107 (107)
T ss_dssp TSCHHHT-HHHHHHHEEEGGGEEEE-S
T ss_pred cCccccchHHHHHHhcccHHHhhcCCC
Confidence 555444455556778899999999998
No 16
>TIGR02312 HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase. This model represents the enzyme which hydrates the double bond of 2-oxo-hepta-3-ene-1,7-dioic acid to form 4-hydroxy-2-oxo-heptane-1,7-dioic acid in the catabolism of 4-hydroxyphenylacetic acid. The gene for this enzyme is generally found adjacent to other genes of this pathway in an apparent operon.
Probab=99.69 E-value=5.2e-16 Score=152.90 Aligned_cols=175 Identities=15% Similarity=0.065 Sum_probs=126.8
Q ss_pred CCceEEeCCCCeeeeCCCeeeCCCCCCCCCCCCCCCCCCCCCceecEEEEEEEcCCCCCCCCCCHhHHhhceeEEEEEec
Q 013889 172 HLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMND 251 (434)
Q Consensus 172 ~~P~~f~k~~ssvvg~g~~I~~P~~~~~~~~~~~~~~~~s~~lDyE~ELavVIGk~~~~g~~i~~eeA~d~I~Gytl~ND 251 (434)
+.|++=.-..+.+..+|..+.... -.+.-+|+||+|++||+++ +..++.+|++++|.+|..+.|
T Consensus 76 ~~P~~g~l~~~~~~~~g~~~~~~~---------------~~~p~vE~Eiaf~l~~~l~-~~~~t~~ev~~ai~~v~paiE 139 (267)
T TIGR02312 76 DEPDYGVLLDDMFFEDGSTIPADR---------------FIQPRVEVELAFVLKKDLE-GPNVTIFDVLNATDYVVPALE 139 (267)
T ss_pred CCCeeEEecCccccCCCCeecccc---------------ccccccceEEEEEECCCCC-CCCCCHHHHHHHhheEEeeEE
Confidence 446544445566666676665432 2357899999999999976 578999999999999999999
Q ss_pred cchhhHhhhhcCC-----CCCcccccCCC---CCCCccccccccCCCcCCCCCCCCCCCccccccCCceeeEEEEEEEee
Q 013889 252 WSARDIQAWEYVP-----LGPFLGKSFGT---TLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKP 323 (434)
Q Consensus 252 ~SaRd~Q~~e~~~-----lg~~~~Ksfdt---~lGPwivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~ 323 (434)
+..+.++.|.... +....+.+..+ .+|+.++.++.++ ...+.++|++
T Consensus 140 i~dsr~~~~~~~~~~~~~~~d~iADn~~~~~~v~G~~~~~~~~~d---------------------l~~~~~~l~~---- 194 (267)
T TIGR02312 140 IIDARIERVDPETGATRKVFDTISDNAANAGIVLGGRPVRPDALD---------------------LRWVGAILYR---- 194 (267)
T ss_pred EeeccccccccccCCccccccEecCCccceEEEECCCCCCccccC---------------------hhhcccEEEE----
Confidence 9999999875321 11122332222 2787766555442 2446667777
Q ss_pred CCCCCCeEEEecchhhhccCHHHHHHHH----HHcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccce
Q 013889 324 AGKEDSCVVTRSNFKYLYWTLTQQLAHH----TINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPL 391 (434)
Q Consensus 324 ~~~~NGe~~q~~~t~~m~~s~~~lIa~~----~S~~~tL~pGDlI~TGTp~Gvg~~~~G~~le~~~~G~~~~ 391 (434)
||++++++++++|+.++.+.++|+ ..++.+|++||+|+|||+.|+.++.+|+.++++++|.+.+
T Consensus 195 ----nG~~~~~g~~~~~lg~P~~al~wL~~~l~~~G~~L~aGdiV~TGs~~~~~~v~~G~~~~~~~~glG~v 262 (267)
T TIGR02312 195 ----NGVVEETGLAAGVLNHPANGVAWLANKLAPWGETLEAGQVVLAGSFTRPVAARSGDTFHADYGPLGTI 262 (267)
T ss_pred ----CCEEEEEechhhhcCCHHHHHHHHHHHHHHcCCCCCCCCEEECCCCCCceecCCCCEEEEEEcCCceE
Confidence 999999999999999999888887 3566799999999999999987666666666666555543
No 17
>COG3970 Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only]
Probab=99.48 E-value=3.4e-13 Score=131.76 Aligned_cols=185 Identities=22% Similarity=0.156 Sum_probs=134.0
Q ss_pred ceEEeCCCCeeeeCCCeeeCCCCCCCCCCCCCCCCCCCCCceecEEEEEEEcCCCCCCCCCCHhHHhhceeEEEEEeccc
Q 013889 174 PIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWS 253 (434)
Q Consensus 174 P~~f~k~~ssvvg~g~~I~~P~~~~~~~~~~~~~~~~s~~lDyE~ELavVIGk~~~~g~~i~~eeA~d~I~Gytl~ND~S 253 (434)
=+|+...+.+-||+|+.|-.-.. |+.-.-|.|+++++... |+ |.|||++||++
T Consensus 170 EIFtKaqpmssVG~Ga~Igv~~~--------------S~WnnPEPEvvl~~dS~---G~----------I~GaTlgnDVn 222 (379)
T COG3970 170 EIFTKAQPMSSVGHGAQIGVRPD--------------SEWNNPEPEVVLAVDSS---GK----------IVGATLGNDVN 222 (379)
T ss_pred hheecCCccccccccceeeeccc--------------cccCCCCCeEEEEEcCC---Cc----------EEeeeecCccc
Confidence 34444467788899999955332 78899999999999877 74 99999999999
Q ss_pred hhhHhhhhcCCCCCcccccCCC--CCCCccccccccCCCcCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeE
Q 013889 254 ARDIQAWEYVPLGPFLGKSFGT--TLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCV 331 (434)
Q Consensus 254 aRd~Q~~e~~~lg~~~~Ksfdt--~lGPwivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~ 331 (434)
+||+..+. +|--.++|.... ++||+|++-||.-... +...-.|+|.| .|++ +=..
T Consensus 223 lRD~Egrs--aLlL~kaKdnnasCaiGPfIrlfDe~f~~~-----------------dv~~a~vtLkv--~ged--gf~l 279 (379)
T COG3970 223 LRDFEGRS--ALLLSKAKDNNASCAIGPFIRLFDETFTID-----------------DVKSAEVTLKV--TGED--GFFL 279 (379)
T ss_pred cccccccc--chhcccccccCccccccceEEeecCCCChh-----------------hhhhceEEEEE--EccC--ceEE
Confidence 99998653 333346776655 4999999988752210 01223477776 3442 2234
Q ss_pred EEecchhhhccCHHHHHHHHHHcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceeeCCCCCccCCCCCEEEEEE
Q 013889 332 VTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTG 411 (434)
Q Consensus 332 ~q~~~t~~m~~s~~~lIa~~~S~~~tL~pGDlI~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~~~~~L~~GD~V~~~~ 411 (434)
-..+|++.|-.++.+++..+.-+.....-|-++++||.--++.-+.+ .+....-+.||.|+++
T Consensus 280 ~G~snm~~isR~p~~l~~Q~l~~~hqyPDG~~lflGTmfaP~kDr~~----------------~g~gfth~~gD~VeIS- 342 (379)
T COG3970 280 EGSSNMAEISRSPEELVIQALNRDHQYPDGFALFLGTMFAPGKDRGL----------------KGLGFTHEVGDIVEIS- 342 (379)
T ss_pred eccccHHhhccCHHHHHHHHhccCCCCCCceeEEeeeeeccccccCC----------------CCCCcccCCCCEEEEe-
Confidence 57778999999998888776688889999999999998654432100 0124557899999998
Q ss_pred EEecCCceeeeeceeeEEeeC
Q 013889 412 FCKGNGYTVGFGTCSGKIVPS 432 (434)
Q Consensus 412 ~~~~~~~~~g~G~~~~~v~~~ 432 (434)
+. -||++.|+|.-.
T Consensus 343 -tp------~lG~Lin~V~~~ 356 (379)
T COG3970 343 -TP------KLGTLINPVTTS 356 (379)
T ss_pred -cc------ccceeeeeeecc
Confidence 66 799999999754
No 18
>TIGR03218 catechol_dmpH 4-oxalocrotonate decarboxylase. Members of this protein family are 4-oxalocrotonate decarboxylase. Note that this protein, as characterized (indirectly) in Pseudomonas sp. strain CF600, was inactive except when coexpressed with DmpE, 2-oxopent-4-enoate hydratase, a homologous protein from the same operon. Both of these enzymes are active in the degradation of catechol, a common intermediate in the degradation of aromatic compounds such as benzoate, toluene, phenol, dimethylphenol (dmp), salicylate, etc.
Probab=99.40 E-value=8.3e-12 Score=122.94 Aligned_cols=149 Identities=13% Similarity=0.157 Sum_probs=112.5
Q ss_pred CceecEEEEEEEcCCCCCCCCCCHhHHhhceeEEEEEeccchhhHhhhhcCCCCCcccccCCC---CCCCccccccccCC
Q 013889 213 KLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGT---TLSPWIVTLDALEP 289 (434)
Q Consensus 213 ~lDyE~ELavVIGk~~~~g~~i~~eeA~d~I~Gytl~ND~SaRd~Q~~e~~~lg~~~~Ksfdt---~lGPwivt~del~~ 289 (434)
..-.|+||+|++|++++ +.+.+.+|+.++|..+..+.++-...+..|.. .+....+.|..+ -+||+...++.++
T Consensus 105 ~p~vE~Eiaf~l~~~l~-~~~~t~~ev~~ai~~v~paiEivdsR~~~~~~-~~~~~iADn~~~~~~vlG~~~~~~~~~d- 181 (263)
T TIGR03218 105 HPKVEAEIAFVTKAPLK-GPGCHIGDVLAATDFVMPAVEVIDSRYRDFKF-DLKSVIADNTSSARFVTGGRAANVEDLD- 181 (263)
T ss_pred cceeeeEEEEEECCCCC-CCCCCHHHHHHhhcEEEeeEEeccCcccCCCC-ChhheeeeccccceEEECCCCCCccccC-
Confidence 46899999999999986 67899999999999999999998877776642 223345665544 2788776554432
Q ss_pred CcCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeEEEecchhhhccCHHHHHHHH----HHcCcccCCCCEEE
Q 013889 290 FACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHH----TINGCNLRSGDLLG 365 (434)
Q Consensus 290 ~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~~lIa~~----~S~~~tL~pGDlI~ 365 (434)
..++.+++++ ||+++++++.++..-++...+.|+ ..++..|++||+|+
T Consensus 182 --------------------l~~~~~~l~~--------~g~~v~~g~g~~~lG~P~~al~wL~~~l~~~G~~L~aG~iV~ 233 (263)
T TIGR03218 182 --------------------LRTLGVVMEK--------NGEVVAMGAGAAVLGHPAAAVAMLANHLAERGEEIPAGSFIM 233 (263)
T ss_pred --------------------HhhCcEEEEE--------CCEEEEeecccccCCCHHHHHHHHHHHHHHcCCCCCCCCEEE
Confidence 2456677777 999999999888877766666665 57888999999999
Q ss_pred cCCCCCCccCCCCcEEEEEecCcccee
Q 013889 366 TGTISGPEPESLGCLLELTWNGQKPLS 392 (434)
Q Consensus 366 TGTp~Gvg~~~~G~~le~~~~G~~~~~ 392 (434)
|||..++-++.+|+.+.++++|.+.++
T Consensus 234 tGs~t~~~~v~~G~~~~~~~~glG~v~ 260 (263)
T TIGR03218 234 SGGITEAVAVAPGDSVTVRYQGLGSVS 260 (263)
T ss_pred CCcCcCceecCCCCEEEEEECCCceEE
Confidence 999998776666666666666655443
No 19
>COG3971 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.16 E-value=2.1e-10 Score=110.80 Aligned_cols=150 Identities=18% Similarity=0.227 Sum_probs=118.2
Q ss_pred CceecEEEEEEEcCCCCCCCCCCHhHHhhceeEEEEEeccchhhHh-hhhcCCCCCcccccCCCC---CCCccccccccC
Q 013889 213 KLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQ-AWEYVPLGPFLGKSFGTT---LSPWIVTLDALE 288 (434)
Q Consensus 213 ~lDyE~ELavVIGk~~~~g~~i~~eeA~d~I~Gytl~ND~SaRd~Q-~~e~~~lg~~~~Ksfdt~---lGPwivt~del~ 288 (434)
..-+|+||+++++|+++ +.++|..|+++||.-+..+.++-.-.++ .|+. ++..+.+.|.... |||-.+.+++++
T Consensus 102 ~prvE~EiafvL~kdlp-a~~~T~~d~l~a~~~v~palElidsri~~d~~~-~~~dtiaDnaan~G~ViG~~~~~~~~ld 179 (264)
T COG3971 102 QPRVEVEIAFVLKKDLP-APDCTVADVLNATDYVLPALELIDSRIKQDWQV-KFPDTIADNAANAGFVIGGRAVKPDDLD 179 (264)
T ss_pred ceeeeeeEEEEecCCCC-CCCCCHHHHHHHHHhhhhhhhhccchhhhCCCC-CcceEEecccccCceEECCCCCCchhhh
Confidence 34899999999999998 7899999999999999999888555555 4432 2333556655442 998777776664
Q ss_pred CCcCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeEEEecchhhhccCHHHHHHHHH----HcCcccCCCCEE
Q 013889 289 PFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHT----INGCNLRSGDLL 364 (434)
Q Consensus 289 ~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~~lIa~~~----S~~~tL~pGDlI 364 (434)
+ ......|.. ||++++.+..+..+-++..-++|++ +.+.+|+.||||
T Consensus 180 -~--------------------~~~~~~l~r--------ng~~~e~g~~aavLghP~~a~~wLAn~~a~~G~~Lk~G~IV 230 (264)
T COG3971 180 -L--------------------RNVGATLYR--------NGVEEETGVGAAVLGHPAAALAWLANKLAAYGVPLKAGDIV 230 (264)
T ss_pred -h--------------------hhccceeee--------cCEEEEeeechhhcCCcHHHHHHHHHHHHHcCCCcccCcEE
Confidence 2 335556666 9999999999999999888888864 788999999999
Q ss_pred EcCCCCCCccCCCCcEEEEEecCccceee
Q 013889 365 GTGTISGPEPESLGCLLELTWNGQKPLSL 393 (434)
Q Consensus 365 ~TGTp~Gvg~~~~G~~le~~~~G~~~~~l 393 (434)
+||.-.+.-+..+||.+++.++|.+.+++
T Consensus 231 l~Gs~t~~v~~~~gd~~h~~~~~lG~v~~ 259 (264)
T COG3971 231 LTGSFTGPVPARPGDTFHADFGGLGAVSC 259 (264)
T ss_pred ecCccCccccCCCCCEEEEEecCcCceEE
Confidence 99999998888888888888877776654
No 20
>COG3802 GguC Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.03 E-value=2.5e-05 Score=75.58 Aligned_cols=167 Identities=22% Similarity=0.256 Sum_probs=107.1
Q ss_pred EEeCCCCeeeeCCCeeeCCCCCCCCCCCCCCCCCCCCCceecEEEE--EEEcCCCCCCCCCCHhHHhhceeEEEEEeccc
Q 013889 176 AYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMA--AVVGPGNELGKPIDVNEAADHIFGVMLMNDWS 253 (434)
Q Consensus 176 ~f~k~~ssvvg~g~~I~~P~~~~~~~~~~~~~~~~s~~lDyE~ELa--vVIGk~~~~g~~i~~eeA~d~I~Gytl~ND~S 253 (434)
||.+.-+.+|.+|.+++.|.. .+.=--|.||+ .+||.+ |.. |-.||++.|++|
T Consensus 144 FyKG~G~~~vapGa~l~sPaF--------------AedggEEpEiaGiYlig~d---g~p--------~RlGfal~NEfS 198 (333)
T COG3802 144 FYKGDGTVAVAPGAPLPSPAF--------------AEDGGEEPEIAGIYLIGDD---GTP--------YRLGFALANEFS 198 (333)
T ss_pred EEeCCCcEEecCCCCCCChhh--------------hhccCCCceeeEEEEECCC---Cce--------eEEeeeecchhh
Confidence 556677888899999988875 44455688887 678877 753 778999999999
Q ss_pred hhhHhhhhcCCCCCcccccCCCCCCCccccccccCCCcCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeEE-
Q 013889 254 ARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVV- 332 (434)
Q Consensus 254 aRd~Q~~e~~~lg~~~~Ksfdt~lGPwivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~- 332 (434)
.--..+..| |-...+|=...++||-|..-+ +.. .++=.-++. .+|+++
T Consensus 199 DHvtEr~NY--L~LAHSKLR~as~GPEl~vG~-lP~----------------------~vrG~SRI~------Rdg~viw 247 (333)
T COG3802 199 DHVTERVNY--LYLAHSKLRNASFGPELLVGA-LPE----------------------DVRGVSRIL------RDGEVIW 247 (333)
T ss_pred hhhhhccce--EEeehhhhhccccCcceeecc-Cch----------------------hhcCceeee------cCCEEEE
Confidence 765554333 222467766678999886543 221 111122221 277775
Q ss_pred Eecc---hhhhccCHHHHHHHHHHcCcccCCCCE----EEcCCCCCCccCCCCcEEEEEecCccceeeCCCCCccCCCCC
Q 013889 333 TRSN---FKYLYWTLTQQLAHHTINGCNLRSGDL----LGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGD 405 (434)
Q Consensus 333 q~~~---t~~m~~s~~~lIa~~~S~~~tL~pGDl----I~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~~~~~L~~GD 405 (434)
++.- -.+|-.+++.|=-|+-...+-.+|||| .+|+|.|= .+ ..--+.||
T Consensus 248 ek~FlSGE~nMsHs~aNLEhhHFkY~lfrrpGDvHvh~FGtatlSf----------------------ad--Gikte~GD 303 (333)
T COG3802 248 EKPFLSGEANMSHSIANLEHHHFKYALFRRPGDVHVHFFGTATLSF----------------------AD--GIKTEAGD 303 (333)
T ss_pred ecccccCccchhhhhhhhhhhhhhhhhhcCCCceEEEEeccEEEee----------------------cc--cccCCCCC
Confidence 3332 358999999887776555567899997 34555431 11 12346788
Q ss_pred EEEEEEEEecCCceeeee-ceeeEEe
Q 013889 406 EVTFTGFCKGNGYTVGFG-TCSGKIV 430 (434)
Q Consensus 406 ~V~~~~~~~~~~~~~g~G-~~~~~v~ 430 (434)
+.|+++. .|| .++|++.
T Consensus 304 vfEIea~--------~Fg~PlrN~la 321 (333)
T COG3802 304 VFEIEAA--------PFGLPLRNPLA 321 (333)
T ss_pred EEEEecc--------ccCCcccCccc
Confidence 8888744 566 3566653
No 21
>PF11010 DUF2848: Protein of unknown function (DUF2848); InterPro: IPR021269 This bacterial family of proteins has no known function.
Probab=97.94 E-value=0.00018 Score=67.50 Aligned_cols=155 Identities=13% Similarity=0.102 Sum_probs=112.1
Q ss_pred CCCceEEeCCCCeeeeCCCeeeCCCCCCCCCCCCCCCCCCCCCceecEEEEEEEcCCCCCCCCCCHhHHhhceeEEEEEe
Q 013889 171 FHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMN 250 (434)
Q Consensus 171 ~~~P~~f~k~~ssvvg~g~~I~~P~~~~~~~~~~~~~~~~s~~lDyE~ELavVIGk~~~~g~~i~~eeA~d~I~Gytl~N 250 (434)
...|.+|--.++-+.-. ..|.... ..---|+|.++|..+. + + =.+++-
T Consensus 27 s~vP~~Y~v~~~lltq~-~~i~v~g----------------~~tSGE~E~vli~~~g----~----------~-~v~vgS 74 (194)
T PF11010_consen 27 SSVPLFYRVAPYLLTQA-DEIEVLG----------------EDTSGEAEPVLIRHGG----E----------L-YVGVGS 74 (194)
T ss_pred CCCCEEEEechhhCccc-CeEEecc----------------CCCCceEEEEEEEECC----e----------E-EEEecC
Confidence 45688888877666543 3343322 2344689998777643 2 2 478999
Q ss_pred ccchhhHhhhhcCCCCCcccccCCC-CCCCccccccccCCCcCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCC
Q 013889 251 DWSARDIQAWEYVPLGPFLGKSFGT-TLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDS 329 (434)
Q Consensus 251 D~SaRd~Q~~e~~~lg~~~~Ksfdt-~lGPwivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NG 329 (434)
|=|.|++..... ..+|.... ++++-+-..+++.+.| +.+.|+.++..+| .+
T Consensus 75 DHTDR~lE~~sV-----a~SKq~c~Kpva~~~W~~~dV~dhW-------------------D~l~Lrsw~~~dg----~~ 126 (194)
T PF11010_consen 75 DHTDRKLEAYSV-----AVSKQACPKPVAREAWRLDDVADHW-------------------DELELRSWITEDG----ER 126 (194)
T ss_pred CCccchhhhcCc-----hhhhhcCCccchhhcCcHHHHHhhh-------------------hheeEEEEEeeCC----CE
Confidence 999999986533 45777644 7888777777776643 6688999987653 45
Q ss_pred eEEEecchhhhccCHHHHHHHHHHcCcccCCCCEEEcCCCCCCccCCCCcEEEEEec
Q 013889 330 CVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWN 386 (434)
Q Consensus 330 e~~q~~~t~~m~~s~~~lIa~~~S~~~tL~pGDlI~TGTp~Gvg~~~~G~~le~~~~ 386 (434)
++.|+|.++.|. ++.++|+-+.-....+.+|-++++||..-.|.+.+|+.+++++.
T Consensus 127 ~lYQeGtla~ll-~p~~ll~~~~~~~~~~~~g~~m~~GT~~~~g~~~~a~~f~~eL~ 182 (194)
T PF11010_consen 127 VLYQEGTLAALL-PPADLLERLGEGRGDLPEGTAMFCGTVPAIGGIRPADRFEMELE 182 (194)
T ss_pred EEEeecchhhcC-CHHHHHHhhhccCCCCCCCEEEEEeccccccCccccceEEEEEE
Confidence 678999999875 68899998722567899999999999988887888887777654
No 22
>PF10370 DUF2437: Domain of unknown function (DUF2437); InterPro: IPR018833 This entry represents the N-terminal 50 amino acids of a group of bacterial proteins often annotated as fumarylacetoacetate hydrolase-containing enzymes. In most cases these proteins also contain IPR002529 from INTERPRO, which is found towards the C terminus. ; PDB: 3RR6_A 2DFU_D 3QDF_A.
Probab=87.25 E-value=0.46 Score=35.08 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=20.1
Q ss_pred CCcEEEecCCCCCceeEEEECCeEEech
Q 013889 20 LPYGVFKPEPASVARPGVAIGEYVLDLS 47 (434)
Q Consensus 20 ~p~g~fs~~~~~~~r~Gv~~gd~vvDL~ 47 (434)
|.|+.|++ +++.+.|++.||.|.-+.
T Consensus 1 Mr~~Rf~~--~g~~~~G~l~gd~v~~l~ 26 (50)
T PF10370_consen 1 MRIVRFSH--GGEIRYGVLEGDRVRVLD 26 (50)
T ss_dssp -EEEEEEE--TTEEEEEEEETTCEEEEC
T ss_pred CeEEEEee--CCCcEEEEEECCEEEEEE
Confidence 57888966 457999999999977554
No 23
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=63.49 E-value=31 Score=26.36 Aligned_cols=19 Identities=21% Similarity=0.120 Sum_probs=14.3
Q ss_pred CCeEEEecchhhhccCHHHHHHHH
Q 013889 328 DSCVVTRSNFKYLYWTLTQQLAHH 351 (434)
Q Consensus 328 NGe~~q~~~t~~m~~s~~~lIa~~ 351 (434)
||+.++-. .+ ++.++++++
T Consensus 6 Ng~~~~~~---~~--tl~~Ll~~l 24 (65)
T PRK06488 6 NGETLQTE---AT--TLALLLAEL 24 (65)
T ss_pred CCeEEEcC---cC--cHHHHHHHc
Confidence 99988862 22 788998875
No 24
>cd05790 S1_Rrp40 S1_Rrp40: Rrp40 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=44.47 E-value=61 Score=26.77 Aligned_cols=48 Identities=29% Similarity=0.399 Sum_probs=27.5
Q ss_pred CCCCEEEcCCCCCCccCCCCcEEEEEecCccceee-----CCC---CCccCCCCCEEEEEE
Q 013889 359 RSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL-----DGF---TRKFLEDGDEVTFTG 411 (434)
Q Consensus 359 ~pGDlI~TGTp~Gvg~~~~G~~le~~~~G~~~~~l-----~~~---~~~~L~~GD~V~~~~ 411 (434)
+.||++. |....+ .++...+.++..-+..| ..+ .+.+|+.||.|-.+.
T Consensus 5 ~~gD~VI-G~V~~~----~~~~~~VdI~s~~~a~L~~~~f~gatk~~rp~L~~GDlV~ArV 60 (86)
T cd05790 5 AKGDHVI-GIVVAK----AGDFFKVDIGGSEPASLSYLAFEGATKRNRPNLNVGDLVYARV 60 (86)
T ss_pred CCCCEEE-EEEEEE----cCCeEEEEcCCCcceEechHHcccccccccccCCCCCEEEEEE
Confidence 5677765 444433 35555555544332222 111 478999999998773
No 25
>smart00652 eIF1a eukaryotic translation initiation factor 1A.
Probab=37.63 E-value=52 Score=26.94 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=13.8
Q ss_pred CCccCCCCCEEEEEEE
Q 013889 397 TRKFLEDGDEVTFTGF 412 (434)
Q Consensus 397 ~~~~L~~GD~V~~~~~ 412 (434)
...|++.||.|.++-+
T Consensus 40 k~iwI~~GD~VlVe~~ 55 (83)
T smart00652 40 KKVWIRRGDIVLVDPW 55 (83)
T ss_pred ccEEEcCCCEEEEEec
Confidence 5789999999999844
No 26
>TIGR03220 catechol_dmpE 2-oxopent-4-enoate hydratase. Members of this protein family are 2-oxopent-4-enoate hydratase, which is also called 2-hydroxypent-2,4-dienoate hydratase. It is closely related to another gene found in the same operon, 4-oxalocrotonate decarboxylase, with which it interacts closely.
Probab=35.69 E-value=40 Score=33.11 Aligned_cols=22 Identities=27% Similarity=0.521 Sum_probs=18.3
Q ss_pred CccCCCCCEEEEEEEEecCCceeeeeceee
Q 013889 398 RKFLEDGDEVTFTGFCKGNGYTVGFGTCSG 427 (434)
Q Consensus 398 ~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~ 427 (434)
..++++||+|+++ ++ |+|+++=
T Consensus 232 ~~~v~~Gd~v~~~--~~------glG~v~~ 253 (255)
T TIGR03220 232 LVPVKAGDNLRVS--IG------GIGSCSV 253 (255)
T ss_pred CeeCCCCCEEEEE--Ec------CCceEEE
Confidence 4579999999998 77 8998764
No 27
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=35.63 E-value=61 Score=25.71 Aligned_cols=16 Identities=19% Similarity=0.017 Sum_probs=13.6
Q ss_pred CCccCCCCCEEEEEEE
Q 013889 397 TRKFLEDGDEVTFTGF 412 (434)
Q Consensus 397 ~~~~L~~GD~V~~~~~ 412 (434)
.+.|+.+||.|.++-|
T Consensus 41 ~rI~I~~GD~V~Ve~s 56 (68)
T TIGR00008 41 HYIRILPGDKVKVELS 56 (68)
T ss_pred ccEEECCCCEEEEEEC
Confidence 4789999999999954
No 28
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=33.73 E-value=61 Score=26.98 Aligned_cols=31 Identities=23% Similarity=0.118 Sum_probs=19.8
Q ss_pred CCcEEEEEecCccceeeCCCCCccCCCCCEEEEEEE
Q 013889 377 LGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGF 412 (434)
Q Consensus 377 ~G~~le~~~~G~~~~~l~~~~~~~L~~GD~V~~~~~ 412 (434)
.|..+.+.+.|+-.. ...++.+||.|.+|-|
T Consensus 28 nG~~vla~isGKmR~-----~rIrIl~GD~V~VE~s 58 (87)
T PRK12442 28 NGVEVGAYASGRMRK-----HRIRILAGDRVTLELS 58 (87)
T ss_pred CCCEEEEEeccceee-----eeEEecCCCEEEEEEC
Confidence 344444555554321 3678999999999955
No 29
>PRK08582 hypothetical protein; Provisional
Probab=32.57 E-value=57 Score=29.18 Aligned_cols=65 Identities=22% Similarity=0.340 Sum_probs=37.6
Q ss_pred cccCCCCEEEcCCCCCCccCCCCcEEEEE--ecCcccee-eCCC----CCccCCCCCEEEEEEEEecCCceeeee
Q 013889 356 CNLRSGDLLGTGTISGPEPESLGCLLELT--WNGQKPLS-LDGF----TRKFLEDGDEVTFTGFCKGNGYTVGFG 423 (434)
Q Consensus 356 ~tL~pGDlI~TGTp~Gvg~~~~G~~le~~--~~G~~~~~-l~~~----~~~~L~~GD~V~~~~~~~~~~~~~g~G 423 (434)
|.++.|++ ..|++.++.. .|..+++. +.|.-.++ +.+. ....++.||.|++...--..++.|.|.
T Consensus 1 m~~kvG~i-v~G~V~~I~~--fG~fV~L~~~~~GlVhiSels~~~v~~~~~~l~vGD~VkvkV~~id~~gkI~LS 72 (139)
T PRK08582 1 MSIEVGSK-LQGKVTGITN--FGAFVELPEGKTGLVHISEVADNYVKDINDHLKVGDEVEVKVLNVEDDGKIGLS 72 (139)
T ss_pred CCCcCCCE-EEEEEEEEEC--CeEEEEECCCCEEEEEeeccCcccccccccccCCCCEEEEEEEEECCCCcEEEE
Confidence 56788987 5788887654 46666664 22333322 2222 235789999999884221223455443
No 30
>cd05793 S1_IF1A S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=32.41 E-value=70 Score=25.80 Aligned_cols=16 Identities=25% Similarity=0.553 Sum_probs=13.8
Q ss_pred CCccCCCCCEEEEEEE
Q 013889 397 TRKFLEDGDEVTFTGF 412 (434)
Q Consensus 397 ~~~~L~~GD~V~~~~~ 412 (434)
...|+++||.|.++.+
T Consensus 35 k~iwI~~GD~V~Ve~~ 50 (77)
T cd05793 35 KRVWINEGDIVLVAPW 50 (77)
T ss_pred ccEEEcCCCEEEEEec
Confidence 4689999999999954
No 31
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=31.34 E-value=54 Score=26.53 Aligned_cols=15 Identities=27% Similarity=0.069 Sum_probs=13.3
Q ss_pred CccCCCCCEEEEEEE
Q 013889 398 RKFLEDGDEVTFTGF 412 (434)
Q Consensus 398 ~~~L~~GD~V~~~~~ 412 (434)
..|+.|||+|.++-|
T Consensus 44 ~i~I~~GD~V~Ve~~ 58 (75)
T COG0361 44 RIRILPGDVVLVELS 58 (75)
T ss_pred eEEeCCCCEEEEEec
Confidence 689999999999955
No 32
>PF01176 eIF-1a: Translation initiation factor 1A / IF-1; InterPro: IPR006196 The S1 domain of around 70 amino acids, originally identified in ribosomal protein S1, is found in a large number of RNA-associated proteins. It has been shown that S1 proteins bind RNA through their S1 domains with some degree of sequence specificity. This type of S1 domain is found in translation initiation factor 1. The solution structure of one S1 RNA-binding domain from Escherichia coli polynucleotide phosphorylase has been determined []. It displays some similarity with the cold shock domain (CSD) (IPR002059 from INTERPRO). Both the S1 and the CSD domain consist of an antiparallel beta barrel of the same topology with 5 beta strands. This fold is also shared by many other proteins of unrelated function and is known as the OB fold. However, the S1 and CSD fold can be distinguished from the other OB folds by the presence of a short 3(10) helix at the end of strand 3. This unique feature is likely to form a part of the DNA/RNA-binding site. This entry is specific for bacterial, chloroplastic and eukaryotic IF-1 type S1 domains.; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1JT8_A 3I4O_A 1AH9_A 1ZO1_W 1D7Q_A 2OQK_A 2DGY_A 1HR0_W.
Probab=30.50 E-value=36 Score=26.33 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=10.4
Q ss_pred CCccCCCCCEEEEEE
Q 013889 397 TRKFLEDGDEVTFTG 411 (434)
Q Consensus 397 ~~~~L~~GD~V~~~~ 411 (434)
...|++.||.|.++-
T Consensus 38 ~~iwI~~GD~V~V~~ 52 (65)
T PF01176_consen 38 KRIWIKRGDFVLVEP 52 (65)
T ss_dssp TCC---TTEEEEEEE
T ss_pred eeEecCCCCEEEEEe
Confidence 578999999999984
No 33
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=27.71 E-value=89 Score=24.59 Aligned_cols=60 Identities=22% Similarity=0.245 Sum_probs=36.6
Q ss_pred cCCCCEEEcCCCCCCccCCCCcEEEEEecCccce-eeCCCCC-ccCCCCCEEEEEE-EEecCCcee
Q 013889 358 LRSGDLLGTGTISGPEPESLGCLLELTWNGQKPL-SLDGFTR-KFLEDGDEVTFTG-FCKGNGYTV 420 (434)
Q Consensus 358 L~pGDlI~TGTp~Gvg~~~~G~~le~~~~G~~~~-~l~~~~~-~~L~~GD~V~~~~-~~~~~~~~~ 420 (434)
|..|++ .+|+...+.. -|..+++.++|..-+ ...+-.. ..++.||+|.+.. .++.+..++
T Consensus 2 l~~G~~-v~g~V~si~d--~G~~v~~g~~gv~Gfl~~~~~~~~~~~~~Gq~v~~~V~~vd~~~~~v 64 (74)
T cd05694 2 LVEGMV-LSGCVSSVED--HGYILDIGIPGTTGFLPKKDAGNFSKLKVGQLLLCVVEKVKDDGRVV 64 (74)
T ss_pred CCCCCE-EEEEEEEEeC--CEEEEEeCCCCcEEEEEHHHCCcccccCCCCEEEEEEEEEECCCCEE
Confidence 567776 6788877653 588888765453222 2111122 6799999999884 234455554
No 34
>cd04456 S1_IF1A_like S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain. IF1A is also referred to as eIF1A in eukaryotes and aIF1A in archaea. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=26.88 E-value=1e+02 Score=24.85 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=13.6
Q ss_pred CCccCCCCCEEEEEEE
Q 013889 397 TRKFLEDGDEVTFTGF 412 (434)
Q Consensus 397 ~~~~L~~GD~V~~~~~ 412 (434)
...|++.||.|.++.+
T Consensus 35 k~iwI~~GD~VlV~~~ 50 (78)
T cd04456 35 KNIWIKRGDFLIVDPI 50 (78)
T ss_pred cCEEEcCCCEEEEEec
Confidence 4589999999999854
No 35
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=26.54 E-value=2e+02 Score=27.38 Aligned_cols=54 Identities=19% Similarity=0.076 Sum_probs=37.2
Q ss_pred ccCCCCEEEcCCC--CCCccCCCCcEEEEEecCcccee-------eCCC--CCccCCCCCEEEEE
Q 013889 357 NLRSGDLLGTGTI--SGPEPESLGCLLELTWNGQKPLS-------LDGF--TRKFLEDGDEVTFT 410 (434)
Q Consensus 357 tL~pGDlI~TGTp--~Gvg~~~~G~~le~~~~G~~~~~-------l~~~--~~~~L~~GD~V~~~ 410 (434)
-..|||+|++.-. .|-+....|..+.+...|.-... +... .+..+|.||+|--+
T Consensus 7 ~v~PGd~~a~~EE~~~G~gt~~~~g~i~Aa~~G~~~~d~~n~~~~V~p~~~~~~~~K~GdiV~gr 71 (188)
T COG1096 7 FVLPGDVLAVIEEFLPGEGTYEEGGEIRAAATGVVRRDDKNRVISVKPGKKTPPLPKGGDIVYGR 71 (188)
T ss_pred EEcCcceeeeeeeeecCCCeEeECCEEEEeecccEEEcccceEEEeccCCCCCCCCCCCCEEEEE
Confidence 3569999999887 66666556666766666643322 2333 37889999999776
No 36
>PRK04012 translation initiation factor IF-1A; Provisional
Probab=25.85 E-value=1e+02 Score=26.21 Aligned_cols=16 Identities=25% Similarity=0.580 Sum_probs=13.8
Q ss_pred CCccCCCCCEEEEEEE
Q 013889 397 TRKFLEDGDEVTFTGF 412 (434)
Q Consensus 397 ~~~~L~~GD~V~~~~~ 412 (434)
...|+++||.|.++-|
T Consensus 56 k~IwI~~GD~VlVe~~ 71 (100)
T PRK04012 56 KRMWIREGDVVIVAPW 71 (100)
T ss_pred ccEEecCCCEEEEEec
Confidence 4789999999999854
No 37
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=23.91 E-value=1e+02 Score=25.66 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=16.1
Q ss_pred cCcccCCCCEEEcCCCCCC
Q 013889 354 NGCNLRSGDLLGTGTISGP 372 (434)
Q Consensus 354 ~~~tL~pGDlI~TGTp~Gv 372 (434)
+.-+|+.||.|.+||-.|.
T Consensus 23 ~~GtL~~Gd~iv~G~~~Gk 41 (95)
T cd03701 23 QNGTLKKGDVIVAGGTYGK 41 (95)
T ss_pred EcCeEecCCEEEECCccce
Confidence 3458999999999999874
No 38
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=22.20 E-value=2.5e+02 Score=23.25 Aligned_cols=58 Identities=29% Similarity=0.316 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHcCcccCCCCEEE-cCCCCCCccCCCCcEEEEEecCccceeeCCCCCccCCCCCEEEEE
Q 013889 343 TLTQQLAHHTINGCNLRSGDLLG-TGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFT 410 (434)
Q Consensus 343 s~~~lIa~~~S~~~tL~pGDlI~-TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~~~~~L~~GD~V~~~ 410 (434)
++.++|+++..++..+ -.+++. .|++ .+|-. +-++|.. ++.-.+...-|++||+|.+=
T Consensus 30 tV~dll~~L~~~~~~~-~~~lf~~~g~l------r~~i~--VlvN~~d-i~~l~g~~t~L~dgD~v~i~ 88 (94)
T cd01764 30 TVGDLLDYVASNLLEE-RPDLFIEGGSV------RPGII--VLINDTD-WELLGEEDYILEDGDHVVFI 88 (94)
T ss_pred cHHHHHHHHHHhCchh-hhhhEecCCcc------cCCEE--EEECCcc-ccccCCcccCCCCcCEEEEE
Confidence 6889999986554332 223332 2332 22222 2333332 22222334679999999873
No 39
>COG0776 HimA Bacterial nucleoid DNA-binding protein [DNA replication, recombination, and repair]
Probab=21.17 E-value=72 Score=26.88 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=19.7
Q ss_pred ccCCCCCEEEEEEEEecCCceeeeeceeeEEeeCC
Q 013889 399 KFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPST 433 (434)
Q Consensus 399 ~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~v~~~~ 433 (434)
..|..||.|++. |||..+-+..+++
T Consensus 35 ~aL~~G~~V~l~----------gFG~F~v~~R~aR 59 (94)
T COG0776 35 EALAKGERVELR----------GFGTFEVRERAAR 59 (94)
T ss_pred HHHHcCCeEEEe----------eeeeeEeeccCCC
Confidence 358899999987 9999877766654
No 40
>PLN00208 translation initiation factor (eIF); Provisional
Probab=20.95 E-value=1.2e+02 Score=27.58 Aligned_cols=16 Identities=13% Similarity=0.189 Sum_probs=13.7
Q ss_pred CCccCCCCCEEEEEEE
Q 013889 397 TRKFLEDGDEVTFTGF 412 (434)
Q Consensus 397 ~~~~L~~GD~V~~~~~ 412 (434)
...|+++||.|.++.|
T Consensus 67 KrIWI~~GD~VlVel~ 82 (145)
T PLN00208 67 KKVWIAAGDIILVGLR 82 (145)
T ss_pred eeEEecCCCEEEEEcc
Confidence 4689999999999844
No 41
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=20.82 E-value=40 Score=34.47 Aligned_cols=45 Identities=24% Similarity=0.301 Sum_probs=34.6
Q ss_pred CCeEEEecchhhhccCHHHHHHHH--------H-------HcCcccCCCCEEEcCCCCCCc
Q 013889 328 DSCVVTRSNFKYLYWTLTQQLAHH--------T-------INGCNLRSGDLLGTGTISGPE 373 (434)
Q Consensus 328 NGe~~q~~~t~~m~~s~~~lIa~~--------~-------S~~~tL~pGDlI~TGTp~Gvg 373 (434)
||++++++.-..-+|+.+-.++-- . +..+.|++||||..+|= |+-
T Consensus 198 ~G~vv~~S~~Q~H~FN~PyQLs~~p~~~~~~~~d~p~~ad~~~~~v~~GDvIilATD-Glf 257 (330)
T KOG1379|consen 198 EGKVVFRSPEQQHYFNTPYQLSSPPEGYSSYISDVPDSADVTSFDVQKGDVIILATD-GLF 257 (330)
T ss_pred CCEEEEcCchheeccCCceeeccCCccccccccCCccccceEEEeccCCCEEEEecc-ccc
Confidence 999999999999999877554321 0 23468999999999997 553
No 42
>PTZ00329 eukaryotic translation initiation factor 1A; Provisional
Probab=20.11 E-value=1.3e+02 Score=27.72 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=13.5
Q ss_pred CCccCCCCCEEEEEEE
Q 013889 397 TRKFLEDGDEVTFTGF 412 (434)
Q Consensus 397 ~~~~L~~GD~V~~~~~ 412 (434)
...|+++||.|.++.|
T Consensus 67 K~IWI~~GD~VlVel~ 82 (155)
T PTZ00329 67 KRVWINIGDIILVSLR 82 (155)
T ss_pred eeEEecCCCEEEEecc
Confidence 3689999999999854
No 43
>PRK05807 hypothetical protein; Provisional
Probab=20.05 E-value=1.3e+02 Score=26.75 Aligned_cols=51 Identities=22% Similarity=0.428 Sum_probs=31.8
Q ss_pred cccCCCCEEEcCCCCCCccCCCCcEEEEEecCcc-cee---eCCC----CCccCCCCCEEEEEE
Q 013889 356 CNLRSGDLLGTGTISGPEPESLGCLLELTWNGQK-PLS---LDGF----TRKFLEDGDEVTFTG 411 (434)
Q Consensus 356 ~tL~pGDlI~TGTp~Gvg~~~~G~~le~~~~G~~-~~~---l~~~----~~~~L~~GD~V~~~~ 411 (434)
|.++.|+ +.+|++.++.. .|..+++ .+.. -+. +.++ ...+++.||+|++..
T Consensus 1 m~~~vG~-vv~G~Vt~i~~--~GafV~L--~~~~Glvhiseis~~~v~~~~~~~kvGd~V~VkV 59 (136)
T PRK05807 1 MTLKAGS-ILEGTVVNITN--FGAFVEV--EGKTGLVHISEVADTYVKDIREHLKEQDKVKVKV 59 (136)
T ss_pred CCccCCC-EEEEEEEEEEC--CeEEEEE--CCEEEEEEhhhcccccccCccccCCCCCEEEEEE
Confidence 4577888 45799888764 4667766 3321 111 2222 246789999999883
Done!