Query 013889
Match_columns 434
No_of_seqs 278 out of 2046
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 19:00:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013889.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013889hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hyo_A Fumarylacetoacetate hyd 100.0 1.7E-93 5.9E-98 737.3 32.3 415 3-433 2-418 (421)
2 3lzk_A Fumarylacetoacetate hyd 100.0 6.6E-67 2.2E-71 529.2 22.7 320 20-433 22-357 (359)
3 3r6o_A 2-hydroxyhepta-2,4-dien 100.0 4E-58 1.4E-62 459.6 25.0 293 18-433 20-322 (329)
4 4dbf_A 2-hydroxyhepta-2,4-dien 100.0 6.2E-55 2.1E-59 429.9 18.4 218 109-432 64-288 (288)
5 3rr6_A Putative uncharacterize 100.0 9.1E-54 3.1E-58 417.5 16.5 213 109-432 48-263 (265)
6 2dfu_A Probable 2-hydroxyhepta 100.0 2E-51 6.9E-56 401.5 21.4 216 111-433 33-260 (264)
7 1wzo_A HPCE; structural genomi 100.0 6.5E-51 2.2E-55 394.2 22.6 213 112-432 30-245 (246)
8 3l53_A Putative fumarylacetoac 100.0 1.8E-50 6.3E-55 386.0 18.4 189 115-375 3-199 (224)
9 3s52_A Putative fumarylacetoac 100.0 5.3E-50 1.8E-54 382.2 18.1 211 112-430 8-221 (221)
10 2q18_X 2-keto-3-deoxy-D-arabin 100.0 5.4E-49 1.8E-53 389.8 15.6 280 20-433 1-290 (293)
11 1saw_A Hypothetical protein FL 100.0 5.2E-47 1.8E-51 362.4 17.6 199 128-432 22-223 (225)
12 1gtt_A 4-hydroxyphenylacetate 100.0 3.1E-47 1.1E-51 395.2 16.9 215 109-432 207-425 (429)
13 1nkq_A Hypothetical 28.8 kDa p 100.0 1E-44 3.5E-49 353.1 16.4 206 121-429 4-243 (259)
14 1gtt_A 4-hydroxyphenylacetate 100.0 3.3E-43 1.1E-47 365.0 19.6 192 128-391 6-199 (429)
15 2wqt_A 2-keto-4-pentenoate hyd 100.0 2.5E-36 8.7E-41 295.7 15.4 194 127-432 59-263 (270)
16 2eb4_A 2-OXO-HEPT-3-ENE-1,7-di 100.0 8.8E-37 3E-41 298.5 9.2 178 173-430 77-267 (267)
17 2k52_A Uncharacterized protein 63.6 7.3 0.00025 29.9 4.1 64 356-422 1-68 (80)
18 1tyg_B YJBS; alpha beta barrel 50.3 15 0.00052 29.1 3.9 12 399-410 70-81 (87)
19 3l53_A Putative fumarylacetoac 49.1 10 0.00036 35.2 3.2 21 399-425 197-217 (224)
20 1f0z_A THis protein; ubiquitin 45.7 13 0.00045 27.3 2.7 20 328-351 6-25 (66)
21 2kl0_A Putative thiamin biosyn 43.3 22 0.00075 27.0 3.7 13 398-410 47-59 (73)
22 2khj_A 30S ribosomal protein S 42.3 22 0.00076 28.7 3.9 64 356-422 27-98 (109)
23 2k5p_A THis protein, thiamine- 40.5 25 0.00084 27.2 3.6 22 328-351 6-27 (78)
24 2k4k_A GSP13, general stress p 37.5 22 0.00075 30.0 3.2 64 356-422 3-74 (130)
25 1kl9_A Eukaryotic translation 37.2 20 0.00067 32.3 3.0 63 358-423 13-85 (182)
26 2k9x_A Tburm1, uncharacterized 33.6 21 0.00072 29.5 2.4 62 342-410 35-96 (110)
27 3i4o_A Translation initiation 27.5 45 0.0015 26.0 3.1 30 378-412 36-65 (79)
28 2dgy_A MGC11102 protein; EIF-1 26.9 70 0.0024 26.5 4.4 16 397-412 50-65 (111)
29 3esi_A Uncharacterized protein 22.4 81 0.0028 26.7 4.1 26 398-423 75-100 (129)
30 2a19_A EIF-2- alpha, eukaryoti 21.2 49 0.0017 29.4 2.6 61 360-423 15-85 (175)
No 1
>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A {Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A 2hzy_A* 1qco_A 1qqj_A
Probab=100.00 E-value=1.7e-93 Score=737.29 Aligned_cols=415 Identities=57% Similarity=1.035 Sum_probs=365.6
Q ss_pred cccccccCCCCCCCCCCCCcEEEecCCCCCceeEEEECCeEEechhhhhcCCCCCCC-ccCCCccCcccHHHHHhcCchh
Q 013889 3 LQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPI-LKDSDCFLQPNLNKFLSLGRPA 81 (434)
Q Consensus 3 ~~s~~~~~~~~~f~~~~~p~g~fs~~~~~~~r~Gv~~gd~vvDL~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~ 81 (434)
.+|||+++.+|+|||||||||+|++..++.+|+|+++||.|+||+++.. .+..+. ...+++|.+++|++||++|++.
T Consensus 2 ~~s~~~~~~~~~f~~~nlp~g~f~~~~~~~~r~Gv~igd~v~DL~~~~~--~~~~~~~~~~~~~~~~~tL~~~l~~g~~~ 79 (421)
T 1hyo_A 2 SMSFIPVAEDSDFPIQNLPYGVFSTQSNPKPRIGVAIGDQILDLSVIKH--LFTGPALSKHQHVFDETTLNNFMGLGQAA 79 (421)
T ss_dssp -CCSSCCCTTCSCCTTTCCEEEEECSSCCSCEEEEEETTEEEETTTTGG--GCCSTTTTTCGGGGGSSSSHHHHHHCHHH
T ss_pred CcccccCCCCCCCCccCceEEEEEeCCCCceEEEEEeCCEEEeHHHhHh--hcccccccccccccCCcCHHHHHhcChHH
Confidence 4799999999999999999999998777889999999999999987654 221111 0123467788999999999999
Q ss_pred HHHHHHHHHHHHhcCchhhhhhhhhcccccccCCCcEEeCCccccccceeeccHHHHHHhchhcCCCCCCCCCcchhhhh
Q 013889 82 WKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQ 161 (434)
Q Consensus 82 ~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~v~ll~Pv~~~~~~~~~~~~~H~~~~g~~~~~~~~~~~p~~~~~~~ 161 (434)
|.++|+.++++++.....++++..+.....+++++|+|++|+.+++|+|||+|++|++|+++.|++.+++++|+|
T Consensus 80 ~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~v~ll~P~~~~~y~df~~~~~Ha~~~g~~~r~~~~~~~p~~----- 154 (421)
T 1hyo_A 80 WKEARASLQNLLSASQARLRDDKELRQRAFTSQASATMHLPATIGDYTDFYSSRQHATNVGIMFRGKENALLPNW----- 154 (421)
T ss_dssp HHHHHHHHHHHHTTSSTHHHHCHHHHHHHEEESTTCEEECSSCCSCEEEECCCHHHHHHHHHHHHCGGGCSCTTT-----
T ss_pred HHHHHHHHHHHhhccCccccccccccccccccHhHCeEcCCcccCcEEEEechHHHHHHHHhhhccccccCCCCc-----
Confidence 999999999887654333333333333456899999999999999999999999999999988776655678888
Q ss_pred hccccCCCCCCCceEEeCCCCeeeeCCCeeeCCCCCCCCCCCCCCCCCCCCCceecEEEEEEEcCCCCCCCCCCHhHHhh
Q 013889 162 VYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAAD 241 (434)
Q Consensus 162 ~~~~~p~~~~~~P~~f~k~~ssvvg~g~~I~~P~~~~~~~~~~~~~~~~s~~lDyE~ELavVIGk~~~~g~~i~~eeA~d 241 (434)
++.|++|+|++||++++|++|.+|.+++.+.+...|.|++++++|||+||||||||+++.|++|++++|++
T Consensus 155 ---------~~~Pv~f~k~~ssvv~~g~~I~~P~~~~~~~~~~~p~~~~s~~lD~E~ELavvIG~~~~~g~~v~~~~A~~ 225 (421)
T 1hyo_A 155 ---------LHLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHE 225 (421)
T ss_dssp ---------TTSCCEEECCSTTEEETTCCEECCEEEECSCTTSCCEEEECSCEECBEEEEEEECSCCCTTCCCCHHHHGG
T ss_pred ---------CCCCEEEEcccceEEcCCCeEECCCCcccCccccccccccccCceEEEEEEEEECcccccCCCCCHHHHHH
Confidence 78999999999999999999999988765444444777779999999999999999988889999999999
Q ss_pred ceeEEEEEeccchhhHhhhhcCCCCCcccccCCCCCCCccccccccCCCcCCCCCCCCCCCccccccCCceeeEEEEEEE
Q 013889 242 HIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQI 321 (434)
Q Consensus 242 ~I~Gytl~ND~SaRd~Q~~e~~~lg~~~~Ksfdt~lGPwivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~ 321 (434)
||+||+++||||+||+|.|++++++|++||+|+|+|||||||+|+++++|+.+|++||+.+|||.+.++..++|+|++++
T Consensus 226 ~I~Gy~l~ND~SaRdiQ~~e~~plg~~~aK~f~t~iGPwivt~d~l~p~~~~~~~~~~~~l~~l~~~~~~~~~l~l~~~v 305 (421)
T 1hyo_A 226 HIFGMVLMNDWSARDIQQWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLSVSL 305 (421)
T ss_dssp GEEEEEEEECCEEHHHHHHHCTTTCCCHHHHTCEEECSCBEEHHHHGGGEECCCCCSSCCCGGGCCCSCCEECCEEEEEE
T ss_pred hhcEEEEEEeccHHhhhhhhcccCCCccccCcCCCCCCeecchhhcccccccccccCCcccccccccCCCccceEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999887777778888777
Q ss_pred eeCCCCCCeEEEecchhhhccCHHHHHHHHHHcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceeeCCC-CCcc
Q 013889 322 KPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGF-TRKF 400 (434)
Q Consensus 322 ~~~~~~NGe~~q~~~t~~m~~s~~~lIa~~~S~~~tL~pGDlI~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~-~~~~ 400 (434)
|++++.||+++|++|+++|+|+++|||+|++|++|+|+|||||+||||+|++..+.||++|++++|++++++.++ +++|
T Consensus 306 N~~~~~~Ge~~q~~~~~~m~~~~~~lIa~lss~g~tL~pGDlI~TGTpsG~~~~~~G~~lE~~~~G~~~v~l~~g~~~~f 385 (421)
T 1hyo_A 306 KGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFGSMLELSWKGTKAIDVGQGQTRTF 385 (421)
T ss_dssp ECTTCSSCEEEEEEETTCCSSCHHHHHHHHHTTSCCCCTTCEEECCCCCCSSGGGCCBHHHHTTTTTSCEECSTTCEESS
T ss_pred ecCCCCCCEEEEecCHHhhcCCHHHHHHHHHHCCCccCCCCEEEcCCCCCCCCCCCcceEEEEecCcceeeccCCCCCcc
Confidence 544444499999999999999999999998679999999999999999999999999999999999999999877 7899
Q ss_pred CCCCCEEEEEEEEecCCceeeeeceeeEEeeCC
Q 013889 401 LEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPST 433 (434)
Q Consensus 401 L~~GD~V~~~~~~~~~~~~~g~G~~~~~v~~~~ 433 (434)
|||||+|+++++|.++|++||||+|+|+|+|+.
T Consensus 386 L~~GD~V~~~~~~~~~g~~igfG~~~~~V~~a~ 418 (421)
T 1hyo_A 386 LLDGDEVIITGHCQGDGYRVGFGQCAGKVLPAL 418 (421)
T ss_dssp CCTTCEEEEEEEEECSSCEEEEEEEEEEEECCC
T ss_pred CCCCCEEEEEEEECCCCceeeeeeeEEEEecCC
Confidence 999999999999988999999999999999985
No 2
>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Sinorhizobium meliloti}
Probab=100.00 E-value=6.6e-67 Score=529.18 Aligned_cols=320 Identities=20% Similarity=0.249 Sum_probs=256.2
Q ss_pred CCcEEEecCCCCCceeEEEECC--eEEechhhhhcCCCCCCCccCCCccCcccHHHHHhcCchhHHHHHHHHHHHHhcCc
Q 013889 20 LPYGVFKPEPASVARPGVAIGE--YVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNE 97 (434)
Q Consensus 20 ~p~g~fs~~~~~~~r~Gv~~gd--~vvDL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~~~~~~ 97 (434)
|+|.+|...+ ...|++++.+| .++++..+ .++|++||+ .|++++..|+++++.-.
T Consensus 22 MKlat~~~~~-~~g~l~vvs~Dl~~~~~~~~~------------------~~~l~~~l~----~w~~~~~~l~~l~~~l~ 78 (359)
T 3lzk_A 22 MKLATLKDST-RDGKLVVVSKDLTRCSEVGHI------------------ARTLQAALD----DWAHAGPRLERVAEGIE 78 (359)
T ss_dssp CEEEEECCSS-SSCEEEEECTTSSEEEECTTT------------------CSSHHHHHH----THHHHHHHHHHHHHHHH
T ss_pred ceEEEEecCC-cccEEEEEeCccccccccccc------------------CcCHHHHHh----ccHhhHHHHHHHHHHHh
Confidence 8999996532 34577777663 23333211 268999999 46666666665443210
Q ss_pred hhhhhhhhhcccccccCCCcEEeCCcccc-ccceeeccHHHHHHhchhcCCCCCCCCCcchhhhhhccccCCCCCCCceE
Q 013889 98 ATLRDNANLRQKSLVPMGKVEMLLPMEIG-DYTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLPIA 176 (434)
Q Consensus 98 ~~~~~~~~~~~~~~~~l~~v~ll~Pv~~~-~~~~~~~~~~H~~~~g~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~P~~ 176 (434)
. .....+++++|+|++|++++ .|++++||.+|++|+++.+ + .+++++| ++.|++
T Consensus 79 ~--------~~~~~~~~~~v~ll~Pv~~~~~~~~g~NY~~Ha~e~~~~~-g--~~~p~~~--------------~~~P~~ 133 (359)
T 3lzk_A 79 T--------GAQPTMRFHEHDAASPLPRAFQWADGSAYVNHVELVRKAR-N--AEMPASF--------------WTDPLI 133 (359)
T ss_dssp H--------TCSCCEECCGGGBCCSSSSCSCEEEECCCHHHHHHHHHHT-T--CCCCGGG--------------GTSCCE
T ss_pred c--------CCCCCCcCccceEcCCCCCCCEEEEEcCHHHHHHHHHHhc-C--CCCCCcc--------------cCccEE
Confidence 0 01234689999999999865 6999999999999998753 2 3457778 788999
Q ss_pred EeCCCCeeeeCCCeeeCCCCCCCCCCCCCCCCCCCCCceecEEEEEEEcCCCCCCCCCCHhHHhhceeEEEEEeccchhh
Q 013889 177 YHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARD 256 (434)
Q Consensus 177 f~k~~ssvvg~g~~I~~P~~~~~~~~~~~~~~~~s~~lDyE~ELavVIGk~~~~g~~i~~eeA~d~I~Gytl~ND~SaRd 256 (434)
|+|+++|+++++++|.+|.. ++++|||+||||||||. |++|++++|++||+|||++||||+||
T Consensus 134 F~k~~ssv~g~~~~I~~P~~--------------s~~lD~E~ELavVIGk~---~~~v~~e~A~~~I~Gytl~ND~SaRD 196 (359)
T 3lzk_A 134 YQGGSDSFLGPRDPILMADD--------------AWGIDMEGEAAVIVDDV---PMGATLDEAKAAIRLVMLVNDVSLRG 196 (359)
T ss_dssp EEECCSSCBCTTSCEEESCT--------------TSCEECCEEEEEEECCB---CTTCCHHHHHHTEEEEEEEECCEETT
T ss_pred EECCCceEECCCCCEECCCC--------------CCCeeEEEEEEEEECCC---CCCCCHHHHHhhhcEEEEEEeccHHH
Confidence 99999999999999999975 88999999999999998 99999999999999999999999999
Q ss_pred HhhhhcC-CCCCcccccCCCCCCCccccccccCCCcCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeEEEec
Q 013889 257 IQAWEYV-PLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRS 335 (434)
Q Consensus 257 ~Q~~e~~-~lg~~~~Ksfdt~lGPwivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~ 335 (434)
+|.+++. +++|++||+| +++||||||+||+++++... ..+++|+++| ||+++|++
T Consensus 197 ~Q~~~~~~g~~~~~~K~~-~~~gP~iVt~del~~~~~~~---------------~~~L~l~~~v--------NGe~~q~~ 252 (359)
T 3lzk_A 197 LIPGELAKGFGFYQSKPS-SAFSPVAVTPEELGEAWDGG---------------KLHLPLHVDL--------NGEPFGRA 252 (359)
T ss_dssp THHHHHHHTSCCSTTSCC-CEECSCEECHHHHGGGBCSS---------------CBCSBEEEEE--------TTEEEECC
T ss_pred hhhhhhccCCCccccccc-cccCCccccHHHcCccccCC---------------ccceEEEEEE--------CCEEEEcC
Confidence 9999875 4899999996 68999999999998754311 1357777777 99999999
Q ss_pred c-hhhhccCHHHHHHHHHHcCcccCCCCEEEcCCCCCCccCC-----------CCcEEEEEecCccceeeCCCCCccCCC
Q 013889 336 N-FKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPES-----------LGCLLELTWNGQKPLSLDGFTRKFLED 403 (434)
Q Consensus 336 ~-t~~m~~s~~~lIa~~~S~~~tL~pGDlI~TGTp~Gvg~~~-----------~G~~le~~~~G~~~~~l~~~~~~~L~~ 403 (434)
| +++|+|+++|||+|+ |+.+||+|||||+||||+|+..-. .||++|+. +..++.....+++||||
T Consensus 253 ~~t~~Mif~~~~lIa~l-S~~~tL~pGDvI~TGTpsGv~~~~~~~~~~~~~~G~~~l~E~~--~~~~~~~g~~~~~fL~~ 329 (359)
T 3lzk_A 253 NAGIDMTFDFPQLIVHA-ARTRPLSAGTIIGSGTVSNKLEGGPGRPVSEGGAGYSCIAELR--MIETIEGGAPKTQFLKF 329 (359)
T ss_dssp BTTSSCSSCHHHHHHHH-TTTSCBCTTEEEECCSCCCCBTTBCCCCGGGTSCBCSSHHHHH--HHHHHHHSSCCSCCBCT
T ss_pred cCcccccCCHHHHHHHH-hCCCCcCCCCEEEcCCcCCCCcccccccccccccccccchhhh--hhhhhccCCCCCCcCCC
Confidence 9 999999999999998 899999999999999999995432 57888873 23333322224579999
Q ss_pred CCEEEEEEEEecCCceeeeeceeeEEeeCC
Q 013889 404 GDEVTFTGFCKGNGYTVGFGTCSGKIVPST 433 (434)
Q Consensus 404 GD~V~~~~~~~~~~~~~g~G~~~~~v~~~~ 433 (434)
||+|+++ +.+.+++|+||+|+|+|+++.
T Consensus 330 GD~V~i~--~~~~~g~~~~G~l~n~V~~~~ 357 (359)
T 3lzk_A 330 GDVVRIE--MKDRTGHSIFGAIEQKVGKYE 357 (359)
T ss_dssp TCEEEEE--EBCTTSCBSSCCEEEEEEECC
T ss_pred CCEEEEE--EEcCCCcccccceEEEEEeCC
Confidence 9999999 666556889999999999874
No 3
>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc genomics, seattle structural genomics center for infectious isomerase; 1.95A {Mycobacterium abscessus}
Probab=100.00 E-value=4e-58 Score=459.56 Aligned_cols=293 Identities=20% Similarity=0.282 Sum_probs=219.9
Q ss_pred CCCCcEEEecCCCCCceeEEEE-CCeEEechhhhhcCCCCCCCccCCCccCcccHHHHHhcCchhHHHHHHHHHHHHhcC
Q 013889 18 QNLPYGVFKPEPASVARPGVAI-GEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSN 96 (434)
Q Consensus 18 ~~~p~g~fs~~~~~~~r~Gv~~-gd~vvDL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~~~~~ 96 (434)
-.|.|..++....++.|.|+++ +++++||+.+....- . .. .....+++ .|+.++..|++.+..+
T Consensus 20 ~~m~~~l~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~--~------~~---~~~~~l~~----~ld~~~~~l~~~l~~~ 84 (329)
T 3r6o_A 20 GSMNLRIVSFAGADQWQPGVLIDDDTVAPLAPMLARHD--I------QV---SSARELIA----LLPQISPLISDELAGG 84 (329)
T ss_dssp --CCCEEEEBC----CCEEEEEETTEEEECSCC--------------------CHHHHHT----THHHHHHHHHHTC---
T ss_pred CceeEEEEEEccCCCccceEEecCCEEEEchhhhcccc--c------cc---cchhhHHH----HHHHHHHHHHHHHhcC
Confidence 3456666665555667888764 889999987654210 0 01 12344444 3444555555332221
Q ss_pred chhhhhhhhhcccccccCCCcEEeCCcccc-c-cceeeccHHHHHHhchhcCCCCCCCCCcchhhhhhccccCCCCCCCc
Q 013889 97 EATLRDNANLRQKSLVPMGKVEMLLPMEIG-D-YTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLP 174 (434)
Q Consensus 97 ~~~~~~~~~~~~~~~~~l~~v~ll~Pv~~~-~-~~~~~~~~~H~~~~g~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~P 174 (434)
....+++++|+|++|++++ + ++++.||.+|++ ++.. .|++ +.|
T Consensus 85 -----------~~~~~~~~~v~llaPv~~p~kI~cvG~NY~~H~~-~g~~--------~P~~---------------~~P 129 (329)
T 3r6o_A 85 -----------SFEPVPLDSVALGAPIPEPGQVIALGFNYPTHSD-TDSP--------LPKM---------------ADP 129 (329)
T ss_dssp ---------------CBGGGSCBCCSSSSCSCEEEEESCSTTC-----------------------------------CC
T ss_pred -----------CCCCccCccceEcCCCCCCCeEEEEcccHHHHHH-hCCC--------CCCc---------------cCC
Confidence 2344799999999999966 4 667788999998 4421 3332 369
Q ss_pred eEEeCCCCeeeeCCCeeeCCCCCCCCCCCCCCCCCCCCCceecEEEEEEEcCCCCCCCCCCHhHHhhceeEEEEEeccch
Q 013889 175 IAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSA 254 (434)
Q Consensus 175 ~~f~k~~ssvvg~g~~I~~P~~~~~~~~~~~~~~~~s~~lDyE~ELavVIGk~~~~g~~i~~eeA~d~I~Gytl~ND~Sa 254 (434)
++|+|+++++++++++|.+|.. +.++|||+||||||||. +++|++++|++||+|||++||||+
T Consensus 130 ~~F~K~~~s~~g~~~~I~~P~~--------------~~~~d~E~ELavVIGk~---~~~v~~e~A~~~I~Gytv~NDvSa 192 (329)
T 3r6o_A 130 VVFMKSPTSISGPRDAVIAPRT--------------SHALDYEIEIAVVIGKP---GYRIERSQAIKHVAGYMLANDITA 192 (329)
T ss_dssp EEEEECGGGEECTTCCEEECTT--------------CSCEECCEEEEEEECSC---BSSCCGGGGGGGEEEEEEEECCEE
T ss_pred EEEEcccceEECCCCceECCCC--------------CCCccEEEEEEEEECCC---CCCCCHHHHHhhheEEEEEEEeEH
Confidence 9999999999999999999975 78999999999999999 999999999999999999999999
Q ss_pred hhHhhh---hcC--CCCCcccccCCCC--CCCccccccccCCCcCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCC
Q 013889 255 RDIQAW---EYV--PLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKE 327 (434)
Q Consensus 255 Rd~Q~~---e~~--~lg~~~~Ksfdt~--lGPwivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~ 327 (434)
||+|.. .+. ..+|++||+||++ +|||+||+|++++ +.++.|+++|
T Consensus 193 Rd~q~~~g~~~~~~~~~w~~aK~fd~~~plGP~ivt~del~d--------------------~~~l~l~l~v-------- 244 (329)
T 3r6o_A 193 RDVALPFGFGGSPLQAQVVRGKGYPTFCPTGPWLFTTGSDTT--------------------FETFDFELRI-------- 244 (329)
T ss_dssp HHHHCTTC------CCCHHHHHCSTTSEEBCSCEEECTTCSS--------------------CCCCEEEEEE--------
T ss_pred HHHhhhhcccccccCCccccccCcCcCcccCCeEcChhhcCC--------------------hhhcEEEEEE--------
Confidence 999863 222 3568999999996 9999999999865 3568888888
Q ss_pred CCeEEEecchhhhccCHHHHHHHHHHcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceeeCCCCCccCCCCCEE
Q 013889 328 DSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEV 407 (434)
Q Consensus 328 NGe~~q~~~t~~m~~s~~~lIa~~~S~~~tL~pGDlI~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~~~~~L~~GD~V 407 (434)
||+++|++|+++|+|++++||+|+ |++++|+|||||+||||+|+|.. +. +++|||+||+|
T Consensus 245 NGe~~q~g~t~dMif~~~~lIa~l-S~~~tL~pGDvI~TGTp~GvG~~------------~~-------p~~~l~~GD~V 304 (329)
T 3r6o_A 245 NGELRQSGSTVDMTLGFAEVVETV-SATIALRAGDIILTGTPGGCGFQ------------FD-------PPRYLRPGDVI 304 (329)
T ss_dssp TTEEEEEEEGGGCSSCHHHHHHHH-HTTSCBCTTCEEECCCCSCCGGG------------SS-------SCCCCCTTCEE
T ss_pred CCEEEEecCHHHhcCCHHHHHHHH-HcCCCcCCCCEEEcCCccccCCC------------CC-------CCccCCCCCEE
Confidence 999999999999999999999998 89999999999999999998731 11 46899999999
Q ss_pred EEEEEEecCCceeeeeceeeEEeeCC
Q 013889 408 TFTGFCKGNGYTVGFGTCSGKIVPST 433 (434)
Q Consensus 408 ~~~~~~~~~~~~~g~G~~~~~v~~~~ 433 (434)
+++ |+ |||+++|+|+...
T Consensus 305 ~~e--i~------glG~l~n~V~~~~ 322 (329)
T 3r6o_A 305 EAH--SA------KLGKMRLPVHDEK 322 (329)
T ss_dssp EEE--ET------TTEEEEEEEEECC
T ss_pred EEE--Ec------CceEEEEEEEeCC
Confidence 999 77 9999999998764
No 4
>4dbf_A 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; oxaloacetate decarboxylase; 1.90A {Corynebacterium glutamicum} PDB: 4dbh_A
Probab=100.00 E-value=6.2e-55 Score=429.90 Aligned_cols=218 Identities=22% Similarity=0.269 Sum_probs=186.5
Q ss_pred cccccCCCcEEeCCccccc-cceeeccHHHHHHhchhcCCCCCCCCCcchhhhhhccccCCCCCCCceEEeCCCCeeeeC
Q 013889 109 KSLVPMGKVEMLLPMEIGD-YTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLPIAYHGRASSVVIS 187 (434)
Q Consensus 109 ~~~~~l~~v~ll~Pv~~~~-~~~~~~~~~H~~~~g~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~P~~f~k~~ssvvg~ 187 (434)
+..+++++|+|++|+.+.+ ++...||.+|++|+++. . + . ++.|++|+|++++++++
T Consensus 64 g~~~~~~~v~ll~Pv~p~ki~cvG~NY~~H~~E~~~~---~--~-~-----------------p~~P~~F~K~~~sv~g~ 120 (288)
T 4dbf_A 64 GREWPLKDVRLLAPMLPSKVVAIGRNYADHVAEVFKK---S--A-E-----------------SLPPTLFLKPPTAVTGP 120 (288)
T ss_dssp EEEEEGGGSEEECSCCCSCEEEEESCBCC----------------------------------CCCCEEEEECGGGEECT
T ss_pred CceeecccCeEcCCCCCceEEEEeccHHHHHHHhccC---C--C-C-----------------CCCCEEEEeCcceeeCC
Confidence 4458999999999998654 56667799999999731 0 1 2 34599999999999999
Q ss_pred CCeeeCCCCCCCCCCCCCCCCCCCCCceecEEEEEEEcCCCCCCCCCCHhHHhhceeEEEEEeccchhhHhhhhcCCCCC
Q 013889 188 GTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGP 267 (434)
Q Consensus 188 g~~I~~P~~~~~~~~~~~~~~~~s~~lDyE~ELavVIGk~~~~g~~i~~eeA~d~I~Gytl~ND~SaRd~Q~~e~~~lg~ 267 (434)
+++|.+|.. ++++|||+|||+||||+ |++|++++|++||+|||++||||+||+|.++. +|
T Consensus 121 ~~~I~~P~~--------------~~~~d~E~ELavVIGk~---~~~v~~~~A~~~I~Gytv~nDvsaRd~Q~~~~---~w 180 (288)
T 4dbf_A 121 ESPIRIPSF--------------ATKVEFEGELAVVIGKP---CKNVKADDWKSVVLGFTIINDVSSRDLQFADG---QW 180 (288)
T ss_dssp TCCEEECTT--------------CCSEECCEEEEEEECSC---BSSCCGGGGGGGEEEEEEEECCEEHHHHHHHS---SS
T ss_pred CCceECCCC--------------CCceeEEEEEEEEECCC---cCCCCHHHHhhheeEEEEEEEeEhHHhhhccC---Cc
Confidence 999999975 78999999999999999 99999999999999999999999999998764 79
Q ss_pred cccccCCCC--CCCccccccccCCCcCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCC----eEEEecchhhhc
Q 013889 268 FLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDS----CVVTRSNFKYLY 341 (434)
Q Consensus 268 ~~~Ksfdt~--lGPwivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NG----e~~q~~~t~~m~ 341 (434)
+++|+||++ |||||+|.+++.+ +.+++|+++| || +++|++++++|+
T Consensus 181 ~~aK~fd~~~plGP~ivt~~~~~d--------------------~~~l~i~~~v--------NG~~~~e~~Q~~~t~~mi 232 (288)
T 4dbf_A 181 ARAKGIDTFGPIGPWIETDINSID--------------------LDNLPIKARL--------THDGETQLKQDSNSNQMI 232 (288)
T ss_dssp HHHHHSTTCEEEEEEEECCGGGSC--------------------TTSCEEEEEE--------EETTEEEEEEEEEGGGBS
T ss_pred cccccCCCCceeCCccccccccCC--------------------ccccEEEEEE--------cCCcceEEEEecCHHHhc
Confidence 999999996 9999999754433 3568888888 99 999999999999
Q ss_pred cCHHHHHHHHHHcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceeeCCCCCccCCCCCEEEEEEEEecCCceee
Q 013889 342 WTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVG 421 (434)
Q Consensus 342 ~s~~~lIa~~~S~~~tL~pGDlI~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~~~~~L~~GD~V~~~~~~~~~~~~~g 421 (434)
|++++||+|+ |+++||+|||||+||||+|++ +|++||+|+++ |+ |
T Consensus 233 ~~~~~lIa~l-S~~~tL~pGDvI~TGTP~Gvg--------------------------~l~~GD~v~v~--ie------g 277 (288)
T 4dbf_A 233 MKMGEIIEFI-TASMTLLPGDVIATGSPAGTE--------------------------AMVDGDYIEIE--IP------G 277 (288)
T ss_dssp SCHHHHHHHH-HTTSCBCTTCEEECCCCSCCC--------------------------BCCTTCEEEEE--ET------T
T ss_pred CCHHHHHHHH-hCCCCcCCCCEEEcCCCCCCe--------------------------ecCCCCEEEEE--EC------C
Confidence 9999999998 899999999999999999975 48999999998 88 9
Q ss_pred eeceeeEEeeC
Q 013889 422 FGTCSGKIVPS 432 (434)
Q Consensus 422 ~G~~~~~v~~~ 432 (434)
+|+++|+|+.|
T Consensus 278 iG~L~n~v~~~ 288 (288)
T 4dbf_A 278 IGKLGNPVVDA 288 (288)
T ss_dssp TEEEEEEEEEC
T ss_pred cEEEEEEEEeC
Confidence 99999999875
No 5
>3rr6_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A
Probab=100.00 E-value=9.1e-54 Score=417.51 Aligned_cols=213 Identities=30% Similarity=0.356 Sum_probs=189.8
Q ss_pred cccccCCCcEEeCCccccc-cceeeccHHHHHHhchhcCCCCCCCCCcchhhhhhccccCCCCCCCceEEeCCCCeeeeC
Q 013889 109 KSLVPMGKVEMLLPMEIGD-YTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLPIAYHGRASSVVIS 187 (434)
Q Consensus 109 ~~~~~l~~v~ll~Pv~~~~-~~~~~~~~~H~~~~g~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~P~~f~k~~ssvvg~ 187 (434)
+..+++++|+|++|+.+.+ ++...||.+|++|++.. . ++.|++|+|++++++++
T Consensus 48 ~~~~~~~~v~ll~P~~p~ki~cvG~NY~~h~~e~g~~--------~-----------------P~~P~~F~K~~~s~~g~ 102 (265)
T 3rr6_A 48 GRQWPLADVRLLAPILASKVVAMGKNYAAHAAEMGGD--------P-----------------PESPVIFIKPNTSIIGP 102 (265)
T ss_dssp EEEEEGGGSEECCSSCCSCEEEESCCBCSSGGGTTSS--------C-----------------CCCCCEEEECGGGEECT
T ss_pred CcEeecccCeEcCCCCCceEEEEEcCHHHHHHHhCCC--------C-----------------CCCCEEEEeCcceEeCC
Confidence 4558999999999998654 45566799999998642 3 34599999999999999
Q ss_pred CCeeeCCCCCCCCCCCCCCCCCCCCCceecEEEEEEEcCCCCCCCCCCHhHHhhceeEEEEEeccchhhHhhhhcCCCCC
Q 013889 188 GTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGP 267 (434)
Q Consensus 188 g~~I~~P~~~~~~~~~~~~~~~~s~~lDyE~ELavVIGk~~~~g~~i~~eeA~d~I~Gytl~ND~SaRd~Q~~e~~~lg~ 267 (434)
+++|.+|.. ++++|||+|||+||||+ +++|++++|++||+|||++||||+||+|.++. +|
T Consensus 103 ~~~I~~P~~--------------~~~~d~E~ELavVIGk~---~~~v~~~~A~~~V~Gyt~~nDvsaRd~q~~~~---~w 162 (265)
T 3rr6_A 103 GLPIQLPPS--------------ATEVHHEGELAIVIGRP---CKDVPAARAAENILGYTIGNDVSARDHQRADG---QW 162 (265)
T ss_dssp TSCEECCTT--------------CSCEEECEEEEEEECSC---BSSCCGGGTGGGEEEEEEEECCEEHHHHHHHS---SS
T ss_pred CCceECCCC--------------CCceeEEEEEEEEECCc---CCCCCHHHHHhheeEEEEEEEeEhHHhhhccC---Cc
Confidence 999999975 78999999999999999 99999999999999999999999999998653 79
Q ss_pred cccccCCCC--CCCccccccccCCCcCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeEEEecchhhhccCHH
Q 013889 268 FLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLT 345 (434)
Q Consensus 268 ~~~Ksfdt~--lGPwivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~ 345 (434)
+++|+|||+ +||||+|. ++ +.++.|+++| ||+++|++++++|+|+++
T Consensus 163 ~~aK~fd~~~plGP~ivt~--~d---------------------~~~l~i~~~v--------NGe~~q~g~t~~mi~~~~ 211 (265)
T 3rr6_A 163 TRAKGHDTFCPLGPWIVTD--LD---------------------PADLEIRTEV--------NGQVRQRSRTSLLLHDVG 211 (265)
T ss_dssp HHHHHSTTCEEEEEEEESS--CC---------------------GGGCEEEEEE--------TTEEEEEEEGGGBSSCHH
T ss_pred ceecccCCCcccCCcCcCC--CC---------------------cccCEEEEEE--------CCEEEEEECHHhhcCCHH
Confidence 999999996 99999983 43 2568888988 999999999999999999
Q ss_pred HHHHHHHHcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceeeCCCCCccCCCCCEEEEEEEEecCCceeeeece
Q 013889 346 QQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTC 425 (434)
Q Consensus 346 ~lIa~~~S~~~tL~pGDlI~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~ 425 (434)
++|+|+ |+++||+|||||+||||+|++ +|++||+|+++ ++ |+|++
T Consensus 212 ~lIa~l-S~~~tL~pGDvI~TGTp~Gvg--------------------------~l~~GD~v~v~--i~------giG~l 256 (265)
T 3rr6_A 212 AIVEWV-SAVMTLLPGDVILTGTPEGVG--------------------------PIVDGDTVSVT--IE------GIGTL 256 (265)
T ss_dssp HHHHHH-HHHSCBCTTCEEECCCCSCCE--------------------------ECCTTCEEEEE--ET------TTEEE
T ss_pred HHHHHH-hcCCCcCCCCEEEeCCCCCce--------------------------eCCCCCEEEEE--EC------CcEEE
Confidence 999998 899999999999999999975 47999999998 78 99999
Q ss_pred eeEEeeC
Q 013889 426 SGKIVPS 432 (434)
Q Consensus 426 ~~~v~~~ 432 (434)
+|+|+.+
T Consensus 257 ~n~v~~~ 263 (265)
T 3rr6_A 257 SNPVVRK 263 (265)
T ss_dssp EEEEECC
T ss_pred EEEEEeC
Confidence 9999865
No 6
>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, structural GE NPPSFA; 2.20A {Thermus thermophilus}
Probab=100.00 E-value=2e-51 Score=401.53 Aligned_cols=216 Identities=23% Similarity=0.270 Sum_probs=179.7
Q ss_pred cccCCCcEEeCCccccc-cceeeccHHHHHHhchhcCCCCCCCCCcchhhhhhccccCCCCCCCceEEeCCCCeeeeCC-
Q 013889 111 LVPMGKVEMLLPMEIGD-YTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLPIAYHGRASSVVISG- 188 (434)
Q Consensus 111 ~~~l~~v~ll~Pv~~~~-~~~~~~~~~H~~~~g~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~P~~f~k~~ssvvg~g- 188 (434)
.+++++++|++|+.+.+ ++.+.||.+|++|+++.+. . + . ++.|++|+|++++++++|
T Consensus 33 ~~~~~~~~ll~P~~p~~i~~~g~Ny~~H~~e~~~~~~-~--~-~-----------------p~~P~~f~k~~~s~~~~~~ 91 (264)
T 2dfu_A 33 RYDLASVTLLPPATPTKIVCVGRNYREHIREMGHDFG-E--D-L-----------------PKEPGLFLKGPNALARPGN 91 (264)
T ss_dssp EEEGGGSCEECSCCCSCEEEECSCBC-----------------C-----------------CSSCCEEEECGGGEECCCB
T ss_pred ccccccCeEcCCccCCeEEEEeCcHHHHHHHhccccc-C--C-C-----------------CCCCEEEEeccceEEccCC
Confidence 47899999999997554 4455679999999985422 1 1 2 345999999999999999
Q ss_pred --------CeeeCCCCCCCCCCCCCCCCCCCCCceecEEEEEEEcCCCCCCCCCCHhHHhhceeEEEEEeccchhhHhhh
Q 013889 189 --------TDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAW 260 (434)
Q Consensus 189 --------~~I~~P~~~~~~~~~~~~~~~~s~~lDyE~ELavVIGk~~~~g~~i~~eeA~d~I~Gytl~ND~SaRd~Q~~ 260 (434)
++|.+|.. ++++|||+|||+||||+ ++++++++|++||+||+++||||+||+|.+
T Consensus 92 ~~rp~g~~~~i~~p~~--------------~~~~d~E~ELavvig~~---~~~v~~~~a~~~I~gy~~~nDvt~Rd~q~~ 154 (264)
T 2dfu_A 92 PRDPWGTAEPVPYPFF--------------TEELHYEGELAVVVGDR---MRHVPPEKALDHVLGYTVAVDITARDVQKK 154 (264)
T ss_dssp TTBHHHHSCCEEECSS--------------CSCEECCEEEEEEECSC---BSSCCHHHHGGGEEEEEEEECCEEHHHHHH
T ss_pred cccccCCCcceecCCC--------------CCceeEEEEEEEEECCC---CCCCCHHHHHHHhhEeEEEEEeEhhhhhhc
Confidence 77777754 67899999999999999 999999999999999999999999999987
Q ss_pred hcCCCCCcccccCCCC--CCCccccccccCCCcCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeEEEecchh
Q 013889 261 EYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFK 338 (434)
Q Consensus 261 e~~~lg~~~~Ksfdt~--lGPwivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~ 338 (434)
+ .+|+++|+||++ +|||++| +++ +.++.|+++| ||+++|+++++
T Consensus 155 ~---~~~~~aK~~d~~~plGp~i~~--~~d---------------------~~~l~i~~~v--------NGe~~q~g~t~ 200 (264)
T 2dfu_A 155 D---LQWVRAKSADKFLPLGPWLET--DLN---------------------PQDTWVRTYV--------NGTLRQEGHTS 200 (264)
T ss_dssp S---SSSHHHHCSTTCEEEEEEEES--SCC---------------------TTSCEEEEEE--------TTEEEEEEEGG
T ss_pred c---CCCceeecCCCCEEECCcCcc--ccC---------------------CCccEEEEEE--------CCEEEEEecHH
Confidence 5 489999999994 9999998 453 2568888888 99999999999
Q ss_pred hhccCHHHHHHHHHHcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceeeCCCCCccCCCCCEEEEEEEEecCCc
Q 013889 339 YLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGY 418 (434)
Q Consensus 339 ~m~~s~~~lIa~~~S~~~tL~pGDlI~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~~~~~L~~GD~V~~~~~~~~~~~ 418 (434)
+|+|+++++|+|+ |++++|+|||||+||||+|++ +|++||+|+++ ++
T Consensus 201 ~mi~~~~~lia~l-s~~~tL~pGDvI~TGTp~Gvg--------------------------~l~~GD~v~~~--i~---- 247 (264)
T 2dfu_A 201 QMIFSVAEILSYI-STFMTLEPLDVVLTGTPEGVG--------------------------ALRPGDRLEVA--VE---- 247 (264)
T ss_dssp GBSSCHHHHHHHH-HTTSCBCTTCEEECCCCSCCC--------------------------BCCTTCEEEEE--ET----
T ss_pred HhhcCHHHHHHHH-hcCCCcCCCCEEEeCCCCCcc--------------------------ccCCCCEEEEE--Ee----
Confidence 9999999999998 899999999999999999975 48999999998 77
Q ss_pred eeeeeceeeEEeeCC
Q 013889 419 TVGFGTCSGKIVPST 433 (434)
Q Consensus 419 ~~g~G~~~~~v~~~~ 433 (434)
|+|+++|+|+++.
T Consensus 248 --glG~l~~~v~~~~ 260 (264)
T 2dfu_A 248 --GVGTLFTLIGPKE 260 (264)
T ss_dssp --TTEEEEEEEEEEC
T ss_pred --CcEEEEEEEEecC
Confidence 9999999998754
No 7
>1wzo_A HPCE; structural genomics, riken structural genomics/proteom initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus}
Probab=100.00 E-value=6.5e-51 Score=394.19 Aligned_cols=213 Identities=23% Similarity=0.327 Sum_probs=180.6
Q ss_pred ccCCCcEEeCCccccc-cceeeccHHHHHHhchhcCCCCCCCCCcchhhhhhccccCCCCCCCceEEeCCCCeeeeCCCe
Q 013889 112 VPMGKVEMLLPMEIGD-YTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTD 190 (434)
Q Consensus 112 ~~l~~v~ll~Pv~~~~-~~~~~~~~~H~~~~g~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~P~~f~k~~ssvvg~g~~ 190 (434)
+++++++|++|+.+.+ ++...+|++|++|+|.. .| ..|++|+|++++++++|++
T Consensus 30 ~~~~~~~~l~P~~p~~i~~vG~ny~~h~~e~g~~--------~P-----------------~~P~~f~k~~~~~~~~g~~ 84 (246)
T 1wzo_A 30 HRPEDVTWLLPFTPGKILGVALNYADHAEELGLS--------RP-----------------EEPALFWKPNTSLLPHKGV 84 (246)
T ss_dssp ECGGGSEECCSSCCCCEEEEESCBC------CCC--------CC-----------------SSCEEEEECGGGEECTTCC
T ss_pred cccccCEEcCCCCCCeEEEEEcChHHHHHHhCCC--------CC-----------------CCCEEEEECcccEeCCCCe
Confidence 5788999999995443 55667799999998642 33 3499999999999999999
Q ss_pred eeCCCCCCCCCCCCCCCCCCCCCceecEEEEEEEcCCCCCCCCCCHhHHhhceeEEEEEeccchhhHhhhhcCCCCCccc
Q 013889 191 IVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLG 270 (434)
Q Consensus 191 I~~P~~~~~~~~~~~~~~~~s~~lDyE~ELavVIGk~~~~g~~i~~eeA~d~I~Gytl~ND~SaRd~Q~~e~~~lg~~~~ 270 (434)
|.+|.+ +.++|||+|||+||||+ ++++++++|++||+||+++||+|+||+|..++ .+|.++
T Consensus 85 i~~p~~--------------~~~~~~E~ELavvig~~---~~~v~~~~a~~~i~g~~~~nD~s~rd~q~~~~--~~~~~~ 145 (246)
T 1wzo_A 85 VLYPKG--------------ARFVHYEVELAVVVGRP---MKRVRAKDALDYVLGYTIANDLVARDYVTNTF--RPPIRA 145 (246)
T ss_dssp EEECTT--------------CSCEECCEEEEEEECSC---BSSCCHHHHGGGEEEEEEEECCEEGGGC------CCCHHH
T ss_pred EECCCC--------------CCceeEEEEEEEEECCC---CCCCCHHHHHhheeEEEEEEECchHHhccccc--CCceee
Confidence 999975 67899999999999999 99999999999999999999999999998764 578999
Q ss_pred ccCCCC--CCCccccccccCCCcCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeEEEecchhhhccCHHHHH
Q 013889 271 KSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQL 348 (434)
Q Consensus 271 Ksfdt~--lGPwivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~~lI 348 (434)
|+|+++ +|||++ .|++.+ +.++.|+++| ||+++|++++++|+|++.++|
T Consensus 146 K~~d~~~~lGp~i~-~~~i~d--------------------~~~l~i~~~v--------NGe~~q~g~t~~mi~~~~~li 196 (246)
T 1wzo_A 146 KGRDTFLPLGPFLV-VEEVED--------------------PQDLWLRAYV--------NGELRQEGHTSRMLYSVAELL 196 (246)
T ss_dssp HCSTTCEEEEEEEE-CSCCSC--------------------TTSCEEEEEE--------TTEEEEEEEGGGBSSCHHHHH
T ss_pred ccCCCCEEECCcCc-HHHcCC--------------------CcccEEEEEE--------CCEEEEeeCHHHhCCCHHHHH
Confidence 999984 999999 888754 2568888888 999999999999999999999
Q ss_pred HHHHHcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceeeCCCCCccCCCCCEEEEEEEEecCCceeeeeceeeE
Q 013889 349 AHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGK 428 (434)
Q Consensus 349 a~~~S~~~tL~pGDlI~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~ 428 (434)
+|+ |++++|+|||||+||||+|++ .|++||+|+++ ++ |+|+++|+
T Consensus 197 a~l-s~~~tL~pGDvI~TGTp~gvg--------------------------~l~~GD~v~~~--i~------glG~l~~~ 241 (246)
T 1wzo_A 197 EFI-SEFMTLEPYDVLLTGTPKGIS--------------------------QVRPGDVMRLE--IE------GLGALENP 241 (246)
T ss_dssp HHH-HTTSCBCTTCEEECCCCCCSC--------------------------EECTTCEEEEE--ET------TSCEEEEE
T ss_pred HHH-hCCCCcCCCCEEEeCCCCCce--------------------------ECCCCCEEEEE--Ec------CcEEEEEE
Confidence 998 899999999999999999975 37899999998 77 99999999
Q ss_pred EeeC
Q 013889 429 IVPS 432 (434)
Q Consensus 429 v~~~ 432 (434)
|+.+
T Consensus 242 v~~~ 245 (246)
T 1wzo_A 242 IEEE 245 (246)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9864
No 8
>3l53_A Putative fumarylacetoacetate isomerase/hydrolase; structural genomics, PSI-2, protein structure initiative; HET: TAR; 2.10A {Oleispira antarctica} PDB: 3v77_A*
Probab=100.00 E-value=1.8e-50 Score=386.03 Aligned_cols=189 Identities=22% Similarity=0.216 Sum_probs=167.1
Q ss_pred CCcEEeCCcccc-c--cceeeccHHHHHHhchhcCCCCCCCCCcchhhhhhccccCCCCCCCceEEeCCCCeeeeCCCee
Q 013889 115 GKVEMLLPMEIG-D--YTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDI 191 (434)
Q Consensus 115 ~~v~ll~Pv~~~-~--~~~~~~~~~H~~~~g~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~P~~f~k~~ssvvg~g~~I 191 (434)
+.|+|++|++.+ . ++...||.+|++|+|.. . ++.|++|+|++++++++|++|
T Consensus 3 ~~~~~~~P~p~~~~ki~cvG~Ny~~h~~e~g~~--------~-----------------p~~P~~F~K~~~s~~~~g~~I 57 (224)
T 3l53_A 3 ELILNQRPYPRDLGKIVCVGRNYAAHAKELNNP--------I-----------------PSSPILFIKPASSAVPFGPVF 57 (224)
T ss_dssp CCEETTEECSSCCCEEEEEECCSHHHHHHTTCC--------C-----------------CSSCEEEEEEGGGEEESCSEE
T ss_pred ccceecCCCCCCCCeEEEEccCHHHHHHHhCCC--------C-----------------CCCCEEEecCCceEECCCCeE
Confidence 568999999854 2 56667799999998642 3 345999999999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCCCCceecEEEEEEEcCCCCCCCCCCHhHHhhceeEEEEEeccchhhHhhhhcC-CCCCccc
Q 013889 192 VRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYV-PLGPFLG 270 (434)
Q Consensus 192 ~~P~~~~~~~~~~~~~~~~s~~lDyE~ELavVIGk~~~~g~~i~~eeA~d~I~Gytl~ND~SaRd~Q~~e~~-~lg~~~~ 270 (434)
.+|.. +.++|||+|||+||||+ +++++++||++||+||+++||||+||+|.+++. +++|.++
T Consensus 58 ~~P~~--------------~~~~d~E~ELavvIgk~---~~~i~~~~A~~~I~Gy~~~nDvs~Rd~q~~~~~~g~~w~~a 120 (224)
T 3l53_A 58 SIPKD--------------QGSVHHELEIAILIGKA---LSRASTEQVAESIAGIGLGLDLTLRDVQDQLKEKGHPWERA 120 (224)
T ss_dssp CCCSS--------------SSCEEECEEEEEEECSC---BSSCCHHHHHHHEEEEEEEECCEEHHHHHHHHHTTCCSHHH
T ss_pred ecCCC--------------CCCcceEEEEEEEECCC---CCCCCHHHHHhhccEEEEEEEeEhHHhhhhhhhcCCCccee
Confidence 99975 78999999999999999 999999999999999999999999999998764 5789999
Q ss_pred ccCCCC--CCCcccccc--ccCCCcCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeEEEecchhhhccCHHH
Q 013889 271 KSFGTT--LSPWIVTLD--ALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQ 346 (434)
Q Consensus 271 Ksfdt~--lGPwivt~d--el~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~~ 346 (434)
|+||++ +||| ++.| ++.+ +.++.++++| ||+++|++++++|+|++++
T Consensus 121 K~fd~~~plGp~-v~~~~~~~~d--------------------~~~l~i~l~v--------NGe~~q~g~t~~mi~~~~~ 171 (224)
T 3l53_A 121 KSFDGACPLTEF-VAVNLASEDE--------------------WQAIGLTLEK--------NGQFQQQGSSAEMLFPILP 171 (224)
T ss_dssp HSSTTSEEECCB-BCCCCSSGGG--------------------GGGEEEEEEE--------TTEEEEEEEGGGCSSCHHH
T ss_pred eccCCCcccCCc-EeCchhhcCC--------------------hhccEEEEEE--------CCEEEEEEcHHHhcCCHHH
Confidence 999995 9997 5777 7754 3568888988 9999999999999999999
Q ss_pred HHHHHHHcCcccCCCCEEEcCCCCCCccC
Q 013889 347 QLAHHTINGCNLRSGDLLGTGTISGPEPE 375 (434)
Q Consensus 347 lIa~~~S~~~tL~pGDlI~TGTp~Gvg~~ 375 (434)
+|+|+ |++++|+|||||+||||+|++.+
T Consensus 172 lia~l-S~~~tL~pGDvI~TGTp~Gvg~l 199 (224)
T 3l53_A 172 LIAHM-SEHFSLQPGDVILTGTPAGVGPL 199 (224)
T ss_dssp HHHHH-HHHSCBCTTCEEECCCCSCCEEC
T ss_pred HHHHH-HCCCCcCCCCEEEcCCCCCCEEc
Confidence 99998 89999999999999999998643
No 9
>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid, structural genomics, center for structural genomics O infectious diseases; 2.01A {Yersinia pestis} SCOP: d.177.1.1 PDB: 1nr9_A
Probab=100.00 E-value=5.3e-50 Score=382.17 Aligned_cols=211 Identities=18% Similarity=0.207 Sum_probs=182.2
Q ss_pred ccCCCcEEeCCccccccceeeccHHHHHHhchhcCCCCCCCCCcchhhhhhccccCCCCCCCceEEeCCCCeeeeCCCee
Q 013889 112 VPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDI 191 (434)
Q Consensus 112 ~~l~~v~ll~Pv~~~~~~~~~~~~~H~~~~g~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~P~~f~k~~ssvvg~g~~I 191 (434)
+++..-.+..|+.. -++...||.+|++|+|.. .| +.|++|+|++++++++|++|
T Consensus 8 ~~~~~~~~~~p~~k-i~~vG~Ny~~h~~e~g~~--------~p-----------------~~P~~F~K~~~~~~~~g~~i 61 (221)
T 3s52_A 8 RDWQGALLDFPVNK-VVCVGSNYAEHIKEMGST--------AS-----------------VEPVLFIKPETALCDIRQPV 61 (221)
T ss_dssp BBTTSCBCCSCCCE-EEEEESCBHHHHHHTTCC--------CC-----------------SSCEEEEEEGGGEEETTSCB
T ss_pred EeeCCCcccCCCCc-EEEEeCCHHHHHHHhCCC--------CC-----------------CceEEEEcCCceEeCCCCeE
Confidence 55555454455321 266777899999998742 33 45999999999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCCCCceecEEEEEEEcCCCCCCCCCCHhHHhhceeEEEEEeccchhhHhhhhcC-CCCCccc
Q 013889 192 VRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYV-PLGPFLG 270 (434)
Q Consensus 192 ~~P~~~~~~~~~~~~~~~~s~~lDyE~ELavVIGk~~~~g~~i~~eeA~d~I~Gytl~ND~SaRd~Q~~e~~-~lg~~~~ 270 (434)
.+|.. ++++|||+|||+||||+ +++++++||++||+||+++||||+||+|.+++. +++|.++
T Consensus 62 ~~p~~--------------~~~~d~E~ELavvig~~---~~~v~~~~A~~~I~Gy~~~nDvs~Rd~q~~~~~~~~~~~~a 124 (221)
T 3s52_A 62 SIPKD--------------FGSVHHEIELAVLIGTP---LKQASEDRVARAIAGYGVALDLTLRELQAGFKKAGQPWEKA 124 (221)
T ss_dssp CCCSS--------------SSCEEECEEEEEEECSC---BSSCCHHHHHHHEEEEEEEECCEEHHHHHHHHHHTCCSHHH
T ss_pred ECCCC--------------CCCccEEEEEEEEECCC---CCCCCHHHHHhhheEEEEEEEeEHHHHhhhhhccCCCccee
Confidence 99975 67999999999999999 899999999999999999999999999987653 5789999
Q ss_pred ccCCCC--CCCccccccccCCCcCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeEEEecchhhhccCHHHHH
Q 013889 271 KSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQL 348 (434)
Q Consensus 271 Ksfdt~--lGPwivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~~lI 348 (434)
|+||++ +|||+ +.|++++ +.++.++++| ||+++|++++++|+|+++++|
T Consensus 125 K~~d~~~plGp~i-~~~~~~d--------------------~~~l~i~l~v--------NGe~~q~g~t~~mi~~~~~li 175 (221)
T 3s52_A 125 KAFDGSCPISGFI-PVAEFGD--------------------AQQADLSLTI--------NGEIRQQGNTRDMITPIIPLI 175 (221)
T ss_dssp HSSTTCEEECCBE-EHHHHCC--------------------GGGCEEEEEE--------TTEEEEEEEGGGBSSCHHHHH
T ss_pred ecCCCCccccCce-ehhhcCC--------------------ccceEEEEEE--------CCEEEEEEcHHHccCCHHHHH
Confidence 999996 99998 5677754 3568888888 999999999999999999999
Q ss_pred HHHHHcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceeeCCCCCccCCCCCEEEEEEEEecCCceeeeeceeeE
Q 013889 349 AHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGK 428 (434)
Q Consensus 349 a~~~S~~~tL~pGDlI~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~ 428 (434)
+|+ |++++|+|||||+||||+|++ .|++||+|+++ ++ |+| ++|+
T Consensus 176 a~l-S~~~tL~pGDvI~TGTp~Gvg--------------------------~l~~GD~v~~~--i~------glG-l~~~ 219 (221)
T 3s52_A 176 SYM-SRFFTLRAGDIVLTGTPQGVG--------------------------PMQSGDMLKIM--LN------GKT-VNTR 219 (221)
T ss_dssp HHH-HHHSCBCTTCEEECCCCSCCE--------------------------EECTTCEEEEE--ET------TEE-EEEE
T ss_pred HHH-hCCCCcCCCCEEEeCCCCcce--------------------------ecCCCCEEEEE--Ee------CeE-EEEE
Confidence 998 899999999999999999975 37899999888 77 899 9998
Q ss_pred Ee
Q 013889 429 IV 430 (434)
Q Consensus 429 v~ 430 (434)
|+
T Consensus 220 v~ 221 (221)
T 3s52_A 220 II 221 (221)
T ss_dssp BC
T ss_pred EC
Confidence 84
No 10
>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase; 2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X 2q1c_X 2q1d_X 3bqb_A
Probab=100.00 E-value=5.4e-49 Score=389.80 Aligned_cols=280 Identities=20% Similarity=0.213 Sum_probs=205.2
Q ss_pred CCcEEEecCCCCCceeEEEECCeEEechhhhhcCCCCCCCccCCCccCcccHHHHHhcCchhHHHHHHHHHHHHhcCchh
Q 013889 20 LPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEAT 99 (434)
Q Consensus 20 ~p~g~fs~~~~~~~r~Gv~~gd~vvDL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~~~~~~~~ 99 (434)
|+|..|... ++.+|+|++.++.++||+....... ...++|.++|+.+...+. ++..
T Consensus 1 Mkl~~~~~~-~g~~~~gvv~~~~v~~l~~~~~~~~-----------~~~~~l~~~l~~~~~~~~-~~~~----------- 56 (293)
T 2q18_X 1 MKLFRVVKR-GYYISYAILDNSTIIRLDEDPIKAL-----------MRYSENKEVLGDRVTGID-YQSL----------- 56 (293)
T ss_dssp CEEEEEEET-TEEEEEEECTTSCEEEESSCHHHHH-----------HHHHHHCCCCEEEESSCC-HHHH-----------
T ss_pred CEEEEEEeC-CCCEEEEEEECCEEEECcccccccc-----------ccCcCHHHHHhCChhhhh-Hhhc-----------
Confidence 678888653 2568999999999999975210000 011456666664432111 1110
Q ss_pred hhhhhhhcccccccCCCcEEeCCccccc-cceeeccHH----HHHHhchhcCCCCCCCCCcchhhhhhccccCCCCCCCc
Q 013889 100 LRDNANLRQKSLVPMGKVEMLLPMEIGD-YTDFFSSMH----HAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLP 174 (434)
Q Consensus 100 ~~~~~~~~~~~~~~l~~v~ll~Pv~~~~-~~~~~~~~~----H~~~~g~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~P 174 (434)
...+++++++|++|+++++ +++..||.+ |++|++..-.+ .+..+.+ + .+..|
T Consensus 57 ---------~~~~~~~~v~ll~Pv~p~~i~~vG~NY~~~~~~h~~e~~~~~~~--~~~~~~~------~------~~~~P 113 (293)
T 2q18_X 57 ---------LKSFQINDIRITKPIDPPEVWGSGISYEMARERYSEENVAKILG--KTIYEKV------Y------DAVRP 113 (293)
T ss_dssp ---------HHHSEETTEEECCSSCCSCEEEEESCBC---------CCCEETT--EEHHHHH------H------HSSSC
T ss_pred ---------CCCCCcccceEeCCcCcceEEEEEechhhhhHHHHHHhcccccc--ccccccc------c------CCCCC
Confidence 1126789999999999654 556667986 78887521000 0000000 0 04569
Q ss_pred eEEeCC-CCeeeeCCCeeeCCCCCCCCCCCCCCCCCCCCCceecEEEEEEEcCCCCCCCCCCHhHHhhceeEEEEEeccc
Q 013889 175 IAYHGR-ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWS 253 (434)
Q Consensus 175 ~~f~k~-~ssvvg~g~~I~~P~~~~~~~~~~~~~~~~s~~lDyE~ELavVIGk~~~~g~~i~~eeA~d~I~Gytl~ND~S 253 (434)
++|+|+ +++++++|++|.+|.. ++.+|||+|||+||||+ + +|+|||++||||
T Consensus 114 ~~F~k~~~~~~~g~~~~i~~p~~--------------~~~~d~E~ELavvIg~~---~----------~i~Gyt~~nDvs 166 (293)
T 2q18_X 114 EIFFKATPNRCVGHGEAIAVRSD--------------SEWTLPEPELAVVLDSN---G----------KILGYTIMDDVS 166 (293)
T ss_dssp EEEEEECGGGEECTTSCEEECTT--------------CSCEECCEEEEEEECTT---C----------CEEEEEEEEECE
T ss_pred EEEECCCCCeEecCCCEEEcCCC--------------CCCcceEEEEEEEECCC---C----------cCceEEEEEEeE
Confidence 999996 7999999999999975 78899999999999998 6 399999999999
Q ss_pred hhhHhhhhcCCCCCcccccCCCC--CCCccccccccCCCcCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeE
Q 013889 254 ARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCV 331 (434)
Q Consensus 254 aRd~Q~~e~~~lg~~~~Ksfdt~--lGPwivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~ 331 (434)
+||+|.+. +.+|.+||+|||+ +|||++|+|++.+ +.+++|+|+|++ ||++
T Consensus 167 ~Rd~q~~~--~~~~~~aK~~d~~~plGP~ivt~dei~d--------------------~~~l~i~l~v~~------NGe~ 218 (293)
T 2q18_X 167 ARDLEAEN--PLYLPQSKIYAGCCAFGPVIVTSDEIKN--------------------PYSLDITLKIVR------EGRV 218 (293)
T ss_dssp EHHHHHHC--GGGHHHHHCSTTCEEEEEEEECGGGCSC--------------------TTSCEEEEEEEE------TTEE
T ss_pred eehhhhhc--ccCccccccCCCCEEECCcEeCHHHcCC--------------------cceeEEEEEEEE------CCEE
Confidence 99999863 2345699999996 9999999999865 256888888765 9999
Q ss_pred EEec--chhhhccCHHHHHHHHHHcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceeeCCCCCccCCCCCEEEE
Q 013889 332 VTRS--NFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTF 409 (434)
Q Consensus 332 ~q~~--~t~~m~~s~~~lIa~~~S~~~tL~pGDlI~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~~~~~L~~GD~V~~ 409 (434)
+|++ |+++|+|++++||+|+ |++++|+|||||+||| |.++. ...||++||+|++
T Consensus 219 ~q~g~~~t~~mi~~~~~li~~l-s~~~tL~pGDvI~TGT--g~~p~---------------------~~~~l~~GD~v~~ 274 (293)
T 2q18_X 219 FFEGSVNTNKMRRKIEEQIQYL-IRDNPIPDGTILTTGT--AIVPG---------------------RDKGLKDEDIVEI 274 (293)
T ss_dssp EEEEEEEGGGBCSCHHHHHHHH-HTTCCCCTTEEEECCC--SCCCC---------------------TTCCCCTTCEEEE
T ss_pred EEECCCCHHHhccCHHHHHHHH-HcCCCCCCCCEEECCC--CCCCC---------------------CCcccCCCCEEEE
Confidence 9997 6999999999999998 8999999999999999 21110 2479999999999
Q ss_pred EEEEecCCceeeeeceeeEEeeCC
Q 013889 410 TGFCKGNGYTVGFGTCSGKIVPST 433 (434)
Q Consensus 410 ~~~~~~~~~~~g~G~~~~~v~~~~ 433 (434)
+ ++ |||+++|+|+..+
T Consensus 275 ~--i~------glG~l~n~v~~~~ 290 (293)
T 2q18_X 275 T--IS------NIGTLITPVKKRR 290 (293)
T ss_dssp E--ET------TTEEEEEEEEECC
T ss_pred E--Ec------CcEEEEEEEEeee
Confidence 9 77 9999999998764
No 11
>1saw_A Hypothetical protein FLJ36880; structural genomics, fumarylacetoacetatehydrolase family, unknown function; 2.20A {Homo sapiens} SCOP: d.177.1.1
Probab=100.00 E-value=5.2e-47 Score=362.39 Aligned_cols=199 Identities=20% Similarity=0.244 Sum_probs=168.1
Q ss_pred cceeeccHHHHHHhchhcCCCCCCCCCcchhhhhhccccCCCCCCCceEEeCCCCeeeeCCCeeeCCCCCCCCCCCCCCC
Q 013889 128 YTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPP 207 (434)
Q Consensus 128 ~~~~~~~~~H~~~~g~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~P~~f~k~~ssvvg~g~~I~~P~~~~~~~~~~~~~ 207 (434)
++...||.+|++|+|.. .| +.|++|+|++++++++|++|.+|..
T Consensus 22 ~~vG~ny~~h~~e~g~~--------~P-----------------~~P~~f~k~~~~~~~~g~~i~~p~~----------- 65 (225)
T 1saw_A 22 VCVGRNYADHVREMRSA--------VL-----------------SEPVLFLKPSTAYAPEGSPILMPAY----------- 65 (225)
T ss_dssp EEESCCBC------------------------------------CCCCEEEEEGGGEEETTSCEECCTT-----------
T ss_pred EEEEeCcHHHHHHhCCC--------CC-----------------CCCEEEECCcceeeCCCCeEECCCC-----------
Confidence 44566799999998642 23 3499999999999999999999975
Q ss_pred CCCCCCceecEEEEEEEcCCCCCCCCCCHhHHhhceeEEEEEeccchhhHhhhhcC-CCCCcccccCCCC--CCCccccc
Q 013889 208 FGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYV-PLGPFLGKSFGTT--LSPWIVTL 284 (434)
Q Consensus 208 ~~~s~~lDyE~ELavVIGk~~~~g~~i~~eeA~d~I~Gytl~ND~SaRd~Q~~e~~-~lg~~~~Ksfdt~--lGPwivt~ 284 (434)
++.+|||+|||+||||. |+++++++|++||+||+++||||+||+|.+++. .++|+++|+|+++ +|||+ +.
T Consensus 66 ---~~~~~~E~ELavvig~~---~~~v~~~~a~~~i~g~~~~nDvt~r~~q~~~~~~~~~~~~aK~~d~~~plGp~v-~~ 138 (225)
T 1saw_A 66 ---TRNLHHELELGVVMGKR---CRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVSAFV-PK 138 (225)
T ss_dssp ---CSCEEECEEEEEEESSC---BCSCCTTTGGGSEEEEEEEECCEEHHHHHHHHHHTCCSHHHHCSTTCEEECCCE-ET
T ss_pred ---CCCccEEEEEEEEECCC---CCCCCHHHHHHhheEEEecccccHHHHhhhhhccCCCceEeecCCCCEecCCcc-cH
Confidence 67899999999999998 999999999999999999999999999998643 4789999999996 99996 66
Q ss_pred cccCCCcCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeEEEecchhhhccCHHHHHHHHHHcCcccCCCCEE
Q 013889 285 DALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLL 364 (434)
Q Consensus 285 del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~~lIa~~~S~~~tL~pGDlI 364 (434)
+++.+ +.++.++++| ||+++|++++++|+|+++++|+|+ |++++|+|||||
T Consensus 139 ~~~~d--------------------~~~l~l~l~v--------NGe~~q~g~~~~mi~~~~~lia~l-s~~~tL~~GDvI 189 (225)
T 1saw_A 139 EKIPD--------------------PHKLKLWLKV--------NGELRQEGETSSMIFSIPYIISYV-SKIITLEEGDII 189 (225)
T ss_dssp TSCSC--------------------TTSCEEEEEE--------TTEEEEEEEGGGBSSCHHHHHHHH-HTTSCBCTTCEE
T ss_pred HHcCC--------------------CceeEEEEEE--------CCEEEEEEcHHHcCCCHHHHHHHH-hCCCCcCCCCEE
Confidence 77643 3568888888 999999999999999999999998 899999999999
Q ss_pred EcCCCCCCccCCCCcEEEEEecCccceeeCCCCCccCCCCCEEEEEEEEecCCceeeeeceeeEEeeC
Q 013889 365 GTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 432 (434)
Q Consensus 365 ~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~v~~~ 432 (434)
+||||+|++ .|++||+|+++ ++ |+|+++|+|+.+
T Consensus 190 ~TGTp~Gvg--------------------------~l~~Gd~v~~~--i~------glG~l~~~v~~~ 223 (225)
T 1saw_A 190 LTGTPKGVG--------------------------PVKENDEIEAG--IH------GLVSMTFKVEKP 223 (225)
T ss_dssp ECCCCSCCE--------------------------EECTTCEEEEE--ET------TTEEEEEEEECC
T ss_pred EcCCCCCce--------------------------eCCCCCEEEEE--EC------CcEEEEEEEEEe
Confidence 999999975 36899999888 77 899999999754
No 12
>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A
Probab=100.00 E-value=3.1e-47 Score=395.18 Aligned_cols=215 Identities=20% Similarity=0.291 Sum_probs=186.3
Q ss_pred cccccCCCcEEeCCccccc-cceeeccHHHHHHhchhcCCCCCCCCCcchhhhhhccccCCCCCCCceEEeCCCCeeeeC
Q 013889 109 KSLVPMGKVEMLLPMEIGD-YTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLPIAYHGRASSVVIS 187 (434)
Q Consensus 109 ~~~~~l~~v~ll~Pv~~~~-~~~~~~~~~H~~~~g~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~P~~f~k~~ssvvg~ 187 (434)
...+++++++|++|++ .+ ++++.||.+|++|++.. .| +.|++|.|++++++++
T Consensus 207 ~~~~~~~~~~~~~p~~-~~i~~vG~ny~~h~~e~g~~--------~p-----------------~~P~~f~k~~~~~~~~ 260 (429)
T 1gtt_A 207 REVTTRKSFPTLPHPH-GTLFALGLNYADHASELEFK--------PP-----------------EEPLVFLKAPNTLTGD 260 (429)
T ss_dssp GGCCSCCCCCCCSSSC-SCEEEESSCBCCC----------------C-----------------CSCCEEEECGGGEECT
T ss_pred ccccccccceecCCCC-CcEEEEEeCHHHHHHHhCCC--------CC-----------------CCCEEEEcCcceEeCC
Confidence 3567999999999998 43 66777799999998642 23 4599999999999999
Q ss_pred CCeeeCCCCCCCCCCCCCCCCCCCCCceecEEEEEEEcCCCCCCCCCCHhHHhhceeEEEEEeccchhh-HhhhhcCCCC
Q 013889 188 GTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARD-IQAWEYVPLG 266 (434)
Q Consensus 188 g~~I~~P~~~~~~~~~~~~~~~~s~~lDyE~ELavVIGk~~~~g~~i~~eeA~d~I~Gytl~ND~SaRd-~Q~~e~~~lg 266 (434)
|++|.+|.. +.++|||+|||+||||+ |+++++++|++||+||+++||+|+|| +|... .+
T Consensus 261 g~~i~~p~~--------------~~~~~~E~Elavvig~~---~~~v~~~~a~~~i~g~~~~nD~t~Rd~lq~~~---~~ 320 (429)
T 1gtt_A 261 NQTSVRPNN--------------IEYMHYEAELVVVIGKQ---ARNVSEADAMDYVAGYTVCNDYAIRDYLENYY---RP 320 (429)
T ss_dssp TEEEEECTT--------------CSCEECCEEEEEEECSC---BSSCCTTTGGGGEEEEEEEECCEEGGGCCSSS---SS
T ss_pred CCeEEcCCC--------------CCCccEEEEEEEEECCC---CCCCCHHHHHhhheEEEEEEEcccchhhhhhc---CC
Confidence 999999975 67999999999999999 99999999999999999999999999 58643 47
Q ss_pred CcccccCCCC--CCCccccccccCCCcCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeEEEecchhhhccCH
Q 013889 267 PFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTL 344 (434)
Q Consensus 267 ~~~~Ksfdt~--lGPwivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~ 344 (434)
|+++|+||++ +|||++|++++++ +.++.|+++| ||+++|++++++|+|++
T Consensus 321 w~~~K~~d~~~~lGp~iv~~~~~~d--------------------~~~l~i~l~v--------NGe~~q~g~~~~mi~~~ 372 (429)
T 1gtt_A 321 NLRVKSRDGLTPMLSTIVPKEAIPD--------------------PHNLTLRTFV--------NGELRQQGTTADLIFSV 372 (429)
T ss_dssp CHHHHSCTTCEEBCSCCEEGGGCSC--------------------TTSCEEEEEE--------TTEEEEEEEGGGBSSCH
T ss_pred ccccccCCCCEEECCcccCHHHcCC--------------------CccceEEEEE--------CCEEEEEeCHHHcCCCH
Confidence 8999999996 9999999999864 2568889988 99999999999999999
Q ss_pred HHHHHHHHHcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceeeCCCCCccCCCCCEEEEEEEEecCCceeeeec
Q 013889 345 TQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGT 424 (434)
Q Consensus 345 ~~lIa~~~S~~~tL~pGDlI~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~ 424 (434)
+++|+|+ |++++|+|||||+||||+|++ +|++||+|+++ ++ |||+
T Consensus 373 ~~lia~l-s~~~tL~~GDvI~TGTp~gvg--------------------------~l~~GD~v~~~--i~------glG~ 417 (429)
T 1gtt_A 373 PFLIAYL-SEFMTLNPGDMIATGTPKGLS--------------------------DVVPGDEVVVE--VE------GVGR 417 (429)
T ss_dssp HHHHHHH-HTTSCBCTTCEEECCCCSCCC--------------------------BCCTTCEEEEE--ET------TTEE
T ss_pred HHHHHHH-hCCCCcCCCCEEEcCCCCCCe--------------------------ECCCCCEEEEE--Ec------CcEE
Confidence 9999998 899999999999999999864 68999999998 77 8999
Q ss_pred eeeEEeeC
Q 013889 425 CSGKIVPS 432 (434)
Q Consensus 425 ~~~~v~~~ 432 (434)
++|+|+++
T Consensus 418 l~~~v~~~ 425 (429)
T 1gtt_A 418 LVNRIVSE 425 (429)
T ss_dssp EEEEEEEH
T ss_pred EEEEEEec
Confidence 99999863
No 13
>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region; dimer, PSI, protein structure initiative; 2.20A {Saccharomyces cerevisiae} SCOP: d.177.1.1
Probab=100.00 E-value=1e-44 Score=353.12 Aligned_cols=206 Identities=22% Similarity=0.233 Sum_probs=166.9
Q ss_pred CCccccc--cceeeccHHHHHHhchhcCCCCCCCCCcchhhhhhccccCCCCCCCceEEeCCCCeeeeC-----------
Q 013889 121 LPMEIGD--YTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLPIAYHGRASSVVIS----------- 187 (434)
Q Consensus 121 ~Pv~~~~--~~~~~~~~~H~~~~g~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~P~~f~k~~ssvvg~----------- 187 (434)
.|+..+. +++..||.+|++|++.. .| +.|++|.|++++++++
T Consensus 4 ~~~~~~~ki~cvG~Ny~~H~~E~g~~--------~p-----------------~~P~~F~K~~~~~~~~~~~~~~~~~~~ 58 (259)
T 1nkq_A 4 NYLKAARKIICIGRNYAAHIKELNNS--------TP-----------------KQPFFFLKPTSSIVTPLSSSLVKTTRP 58 (259)
T ss_dssp GGGGGCCCEEEECSCBCSSGGGGGC-----------------------------CCCEEEECGGGEEBCTTCC------C
T ss_pred ccCCCCCEEEEEecCHHHHHHHhCCC--------CC-----------------CCCEEEeeChhhEeccccccccccccc
Confidence 4565553 55566799999998642 23 4599999999999998
Q ss_pred -------------C-CeeeCCCCCCCCCCCCCCCCCCCCCceecEEEEEEEcCCCCCCCCCCH---hHHhhceeEEEEEe
Q 013889 188 -------------G-TDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDV---NEAADHIFGVMLMN 250 (434)
Q Consensus 188 -------------g-~~I~~P~~~~~~~~~~~~~~~~s~~lDyE~ELavVIGk~~~~g~~i~~---eeA~d~I~Gytl~N 250 (434)
+ ++|.+|.. + ++|||+|||+||||+ ++++++ ++|++||+||+++|
T Consensus 59 ~~~~~~~~~~~~~~~~~I~~p~~--------------~-~~d~E~ELavvIg~~---~~~v~~~t~~ea~~~I~g~~~~n 120 (259)
T 1nkq_A 59 ANSTFNGLNEDGTNPGPIFIPRG--------------V-KVHHEIELALIVSKH---LSNVTKMKPEEVYDSISGVALAL 120 (259)
T ss_dssp CSCSCCCCCTTSCCBCCEEECTT--------------C-CEEECEEEEEEECSC---BCSCCCCCGGGTGGGEEEEEEEE
T ss_pred ccccccccccccCCCCcEEcCCC--------------C-cccEEEEEEEEECCC---CCCCCcCCHHHHHhhhhEEEEEE
Confidence 4 88888764 4 699999999999999 888887 99999999999999
Q ss_pred ccchhhHhhhhcC-CCCCcccccCCCC--CCCccccccccCCCcCCCCCCCCCCCccccccCC-ceeeEEEEEEEeeCCC
Q 013889 251 DWSARDIQAWEYV-PLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKIS-KNYDISLEVQIKPAGK 326 (434)
Q Consensus 251 D~SaRd~Q~~e~~-~lg~~~~Ksfdt~--lGPwivt~del~~~~~~~~~~~~~~~~~l~~~~~-~~l~i~l~V~~~~~~~ 326 (434)
|||+||+|.+++. +++|.++|+|||+ +|||| +.+++.+.+. +. .++.|+++|
T Consensus 121 Dvt~Rd~q~~~~~~~~~~~~aK~~d~~~p~Gp~V-~~~~~~d~~~----------------dl~~~l~l~l~v------- 176 (259)
T 1nkq_A 121 DLTARNVQDEAKKKGLPWTISKGFDTFMPISAIV-SREKFSSYKS----------------NLQDIFRVKCSV------- 176 (259)
T ss_dssp CCEEHHHHHHHHHHTCCSHHHHHSTTCEEBCCCE-EGGGGGGGTT----------------CCTTTEEEEEEE-------
T ss_pred eeeHHHhhhhhhhcCCCcceeeccCcCCCcceEE-ECccccCccc----------------ccccceEEEEEE-------
Confidence 9999999987553 5799999999994 99997 4577654210 11 457888888
Q ss_pred CCCeEEEecchhhhccCHHHHHHHHHHcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceeeCCCCCccCCCCCE
Q 013889 327 EDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDE 406 (434)
Q Consensus 327 ~NGe~~q~~~t~~m~~s~~~lIa~~~S~~~tL~pGDlI~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~~~~~L~~GD~ 406 (434)
||+++|++++++|+|++++||+|+ |++++|+|||||+||||+|++ +|++||+
T Consensus 177 -NGe~~q~g~t~~m~~~~~~Lia~l-S~~~tL~pGDvI~TGTp~Gvg--------------------------~l~~GD~ 228 (259)
T 1nkq_A 177 -NGQLRQDGGTNLMLHPLHKILQHI-STMISLEPGDIILTGTPAGVG--------------------------ELKPGDR 228 (259)
T ss_dssp -TTEEEEEEEGGGBSSCHHHHHHHH-HTTSCBCTTCEEECCCCSCCE--------------------------EECTTCE
T ss_pred -CCEEEEEEcHHHcCCCHHHHHHHH-hCCCCcCCCCEEEeCCCCCcE--------------------------ecCCCCE
Confidence 999999999999999999999998 899999999999999999976 3567777
Q ss_pred EEEEEEEecCCceeeeeceeeEE
Q 013889 407 VTFTGFCKGNGYTVGFGTCSGKI 429 (434)
Q Consensus 407 V~~~~~~~~~~~~~g~G~~~~~v 429 (434)
|+++ ++ |+|++.|++
T Consensus 229 v~~~--i~------glG~~~~~~ 243 (259)
T 1nkq_A 229 VHCE--LL------QNNDNIVDM 243 (259)
T ss_dssp EEEE--EE------ETTEEEEEE
T ss_pred EEEE--EE------cCCceeEEE
Confidence 7666 55 666655554
No 14
>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A
Probab=100.00 E-value=3.3e-43 Score=365.02 Aligned_cols=192 Identities=19% Similarity=0.146 Sum_probs=160.0
Q ss_pred cceeeccHHHHHHhchhcCCCCCCCCCcchhhhhhccccCCCCCCCceEEeCCCCeeeeCCCeeeCCCCCCCCCCCCCCC
Q 013889 128 YTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPP 207 (434)
Q Consensus 128 ~~~~~~~~~H~~~~g~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~P~~f~k~~ssvvg~g~~I~~P~~~~~~~~~~~~~ 207 (434)
+++..||.+|++|++..+.... .... ++.|++|+|++++++++|++|.+|..
T Consensus 6 ~cvg~Ny~~H~~e~~~~~~~~~---~~~~--------------p~~P~~f~k~~~~~~~~g~~i~~p~~----------- 57 (429)
T 1gtt_A 6 FAVALNHRSQLDAWQEAFQQSP---YKAP--------------PKTAVWFIKPRNTVIGCGEPIPFPQG----------- 57 (429)
T ss_dssp EEEESCBHHHHHHHTTGGGSTT---TCSC--------------CSSCEEEEECGGGEECTTCCEEECTT-----------
T ss_pred EEEechHHHHHHHhhccccccc---cCCC--------------CCCCEEEEcCcceEEcCCCeeecCCC-----------
Confidence 5667789999999986432100 0011 46799999999999999999999975
Q ss_pred CCCCCCceecEEEEEEEcCCCCCCCCCCHhHHhhceeEEEEEeccchhhHhhhhcCCCCCcccccCCCC--CCCcccccc
Q 013889 208 FGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLD 285 (434)
Q Consensus 208 ~~~s~~lDyE~ELavVIGk~~~~g~~i~~eeA~d~I~Gytl~ND~SaRd~Q~~e~~~lg~~~~Ksfdt~--lGPwivt~d 285 (434)
++ +|||+|||+||||+ |+++++++|++||+||+++||||+||+|.. .+|.++|+||++ +||| +
T Consensus 58 ---~~-~~~E~Elavvig~~---~~~v~~~~a~~~i~gy~~~nD~s~Rd~~~~----~~~~~aK~fd~~~~lGp~----~ 122 (429)
T 1gtt_A 58 ---EK-VLSGATVALIVGKT---ATKVREEDAAEYIAGYALANDVSLPEESFY----RPAIKAKCRDGFCPIGET----V 122 (429)
T ss_dssp ---CC-EECCEEEEEEECSC---BSSCCGGGGGGGEEEEEEEECCBSCCCCSS----SCCHHHHCSTTCEEBCCC----B
T ss_pred ---CC-ccEEEEEEEEECCC---CCCCCHHHHHhHhhEEEEEEEeeehhhhcc----CCccccCCCCCCEEECCh----h
Confidence 56 99999999999999 999999999999999999999999997643 378999999996 9999 5
Q ss_pred ccCCCcCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeEEEecchhhhccCHHHHHHHHHHcCcccCCCCEEE
Q 013889 286 ALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLG 365 (434)
Q Consensus 286 el~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~~lIa~~~S~~~tL~pGDlI~ 365 (434)
++.+ +.++.|+++| ||+++|++++++|+|+++++|+|+ |++++|+|||||+
T Consensus 123 ~~~d--------------------~~~l~i~~~v--------NGe~~q~g~t~~mi~~~~~li~~l-s~~~tL~~GDvI~ 173 (429)
T 1gtt_A 123 ALSN--------------------VDNLTIYTEI--------NGRPADHWNTADLQRNAAQLLSAL-SEFATLNPGDAIL 173 (429)
T ss_dssp CCSC--------------------CTTCEEEEEE--------TTEEEEEEEGGGBSSCHHHHHHHH-HTTSCBCTTCEEE
T ss_pred hcCC--------------------ccccEEEEEE--------CCEEEEeCCHHHhcCCHHHHHHHH-hcCCCcCCCCEEE
Confidence 5543 2568888888 999999999999999999999998 8999999999999
Q ss_pred cCCCCCCccCCCCcEEEEEecCccce
Q 013889 366 TGTISGPEPESLGCLLELTWNGQKPL 391 (434)
Q Consensus 366 TGTp~Gvg~~~~G~~le~~~~G~~~~ 391 (434)
||||+|++.+++||.+|++++|++.+
T Consensus 174 TGTp~g~~~l~~GD~v~~~i~glG~l 199 (429)
T 1gtt_A 174 LGTPQARVEIQPGDRVRVLAEGFPPL 199 (429)
T ss_dssp CCCCSCCCEECTTCEEEEEETTSCCE
T ss_pred EeccCcceecCCCCEEEEEECCccee
Confidence 99999986555555555555555443
No 15
>2wqt_A 2-keto-4-pentenoate hydratase; lyase, dodecahedral form, aromatic hydrocarbons catabolism; 2.80A {Escherichia coli} PDB: 1sv6_A
Probab=100.00 E-value=2.5e-36 Score=295.73 Aligned_cols=194 Identities=13% Similarity=0.084 Sum_probs=160.2
Q ss_pred ccceeeccHHHHHHhchhcCCCCCCCCCcchhhhhhccccCCCCCCCceEEeCCCCeeeeCCCeeeCCCCCCCCCCCCCC
Q 013889 127 DYTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPP 206 (434)
Q Consensus 127 ~~~~~~~~~~H~~~~g~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~P~~f~k~~ssvvg~g~~I~~P~~~~~~~~~~~~ 206 (434)
.|..+.+|.+|++++|.. .|.| |.+|.| +++++|++|.+|..
T Consensus 59 g~KiGln~~~h~~e~g~~--------~P~~-----------------~~lf~~---~~~~~g~~i~~p~~---------- 100 (270)
T 2wqt_A 59 GRKVGLTHPKVQQQLGVD--------QPDF-----------------GTLFAD---MCYGDNEIIPFSRV---------- 100 (270)
T ss_dssp EEEEECCSHHHHHTTTCS--------SCEE-----------------EEEEGG---GEEETTEEECGGGS----------
T ss_pred EeEecCCCHHHHHHhCCC--------CCCE-----------------EEEech---heeCCCCeeecCcc----------
Confidence 345778899999998742 3444 888876 79999999988853
Q ss_pred CCCCCCCceecEEEEEEEcCCCCCCCCCCHhHHhh---ceeEEEEEeccchhhHhhhhcCCCCCcccccCCC---CCCCc
Q 013889 207 PFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAAD---HIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGT---TLSPW 280 (434)
Q Consensus 207 ~~~~s~~lDyE~ELavVIGk~~~~g~~i~~eeA~d---~I~Gytl~ND~SaRd~Q~~e~~~lg~~~~Ksfdt---~lGPw 280 (434)
.++|||+||||||||+++ |++++++||++ ||++|+.+||++.||+|... ....+||+.+ ++|||
T Consensus 101 -----~~~~~E~ELa~vig~~~~-g~~vt~~~a~~ai~~v~~~~ei~D~~~~~~~~k~----~d~~aDn~s~~~~~lGp~ 170 (270)
T 2wqt_A 101 -----LQPRIEAEIALVLNRDLP-ATDITFDELYNAIEWVLPALEVVGSRIRDWSIQF----VDTVADNASCGVYVIGGP 170 (270)
T ss_dssp -----SSCEEEEEEEEEESSCBC-CTTCCHHHHHTTEEEEEEEEEEECCSBGGGCCCH----HHHHHTGGGCCEEEECBC
T ss_pred -----CccceeeEEEEEECCCCC-CCCCCHHHHHHhhCeEEEEEEEEcCcccccCCCh----hcEEccCccCCCEeECcC
Confidence 479999999999999966 68999999997 88999999999999987211 1123444433 59999
Q ss_pred cccccccCCCcCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeEEEecchhhhccCHHHHHHHHHHc-----C
Q 013889 281 IVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTIN-----G 355 (434)
Q Consensus 281 ivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~~lIa~~~S~-----~ 355 (434)
++++++++ +.++.++|++ ||+++|++++++|+|++.++|+|+ |+ +
T Consensus 171 ~v~~~~~d---------------------~~~l~i~l~v--------NGe~~q~g~~~~ml~~p~~~v~~l-s~~l~~~g 220 (270)
T 2wqt_A 171 AQRPAGLD---------------------LKNCAMKMTR--------NNEEVSSGRGSECLGHPLNAAVWL-ARKMASLG 220 (270)
T ss_dssp CBCSTTCC---------------------CSSCEEEEEE--------TTEEEEEEEGGGTTTSHHHHHHHH-HHHHHHTT
T ss_pred cCCcccCC---------------------hhhCeEEEEE--------CCEEEEEEchhhccCCHHHHHHHH-HHHHHhcC
Confidence 99998873 2568888988 999999999999999999999998 55 7
Q ss_pred cccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceeeCCCCCccCCCCCEEEEEEEEecCCceeeeeceeeEEeeC
Q 013889 356 CNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 432 (434)
Q Consensus 356 ~tL~pGDlI~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~v~~~ 432 (434)
++|+|||||+||||+|+ .+|++||+|+++ ++ |+|+++|+|+..
T Consensus 221 ~tL~~GdvI~TGT~~g~--------------------------~~l~~GD~v~~~--i~------glG~l~~~v~~~ 263 (270)
T 2wqt_A 221 EPLRTGDIILTGALGPM--------------------------VAVNAGDRFEAH--IE------GIGSVAATFSSA 263 (270)
T ss_dssp CCBCTTCEEEEEESSCC--------------------------EECCTTCEEEEE--ET------TTEEEEEEECC-
T ss_pred CCcCCCCEEEcCCCCCC--------------------------eeCCCCCEEEEE--Ec------CCceEEEEEEeC
Confidence 99999999999999874 478999999888 77 899999998754
No 16
>2eb4_A 2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60A {Escherichia coli} PDB: 2eb5_A 2eb6_A
Probab=100.00 E-value=8.8e-37 Score=298.52 Aligned_cols=178 Identities=14% Similarity=0.077 Sum_probs=147.5
Q ss_pred CceEEeCCCCeeeeCCCeeeCCCCCCCCCCCCCCCCCCCCCceecEEEEEEEcCCCCCCCCCCHhHHhhceeEEEEEecc
Q 013889 173 LPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDW 252 (434)
Q Consensus 173 ~P~~f~k~~ssvvg~g~~I~~P~~~~~~~~~~~~~~~~s~~lDyE~ELavVIGk~~~~g~~i~~eeA~d~I~Gytl~ND~ 252 (434)
.|.++.+.+++++++|++|.+|.. .++|||+||||||||+++ |+++++++|++||+||+++||+
T Consensus 77 ~P~~~~l~~~~~~~~g~~i~~p~~---------------~~~~~E~ELa~vig~~l~-~~~vt~~~a~~~v~g~~~~~ei 140 (267)
T 2eb4_A 77 EPDYGALLDDMFFHDGSDIPTDRF---------------IVPRIEVELAFVLAKPLR-GPNCTLFDVYNATDYVIPALEL 140 (267)
T ss_dssp SCEEEEEEGGGEECTTEEECGGGC---------------SSCEEEEEEEEEESSCBC-CSSCCHHHHHHHEEEEEEEEEE
T ss_pred CCcEEEEechheecCCCeecCCcc---------------CcccEeeEEEEEECCCCC-CCCCCHHHHHHhhceEEEEEEe
Confidence 355556667899999999988853 368999999999999965 6899999999999999999999
Q ss_pred chhhHhhhhc-----CCCCCccccc-CCC--CCCCccccccccCCCcCCCCCCCCCCCccccccCCceeeEEEEEEEeeC
Q 013889 253 SARDIQAWEY-----VPLGPFLGKS-FGT--TLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPA 324 (434)
Q Consensus 253 SaRd~Q~~e~-----~~lg~~~~Ks-fdt--~lGPwivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~ 324 (434)
+.|++|.|.. ..+.|..+|+ |++ ++|||++++++++ +.++.++|++
T Consensus 141 ~d~r~~~~~~~~~~~~~~~~~~Ad~~~~~~~~lGp~~v~~~~~d---------------------~~~l~~~l~v----- 194 (267)
T 2eb4_A 141 IDARCHNIDPETQRPRKVFDTISDNAANAGVILGGRPIKPDELD---------------------LRWISALMYR----- 194 (267)
T ss_dssp ECCSBCCC------CCHHHHHHHTGGGEEEEEECSCCBCTTSSC---------------------GGGCEEEEEE-----
T ss_pred ecccccccccccccccCccceeecccccccEEECCCcCCcccCC---------------------hhhCeEEEEE-----
Confidence 9888887753 1223455664 444 4999999988863 2568899998
Q ss_pred CCCCCeEEEecchhhhccCHHHHHHHHHHcC-----cccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceeeCCCCCc
Q 013889 325 GKEDSCVVTRSNFKYLYWTLTQQLAHHTING-----CNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRK 399 (434)
Q Consensus 325 ~~~NGe~~q~~~t~~m~~s~~~lIa~~~S~~-----~tL~pGDlI~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~~~~ 399 (434)
||+++|++++++|+|++.++|+|+ |+. ++|+|||||+||||.|+ .
T Consensus 195 ---NGe~~q~g~t~~ml~~p~~~i~~l-s~~l~~~g~tL~~GDvI~TGT~~g~--------------------------~ 244 (267)
T 2eb4_A 195 ---NGVIEETGVAAGVLNHPANGVAWL-ANKLAPYDVQLEAGQIILGGSFTRP--------------------------V 244 (267)
T ss_dssp ---TTEEEEEEEGGGTTTSTTHHHHHH-HHHHGGGTCCBCTTCEEECCCSSCC--------------------------E
T ss_pred ---CCEEEEEecHHhcccCHHHHHHHH-HHHHHHcCCCCCCCCEEECCCCCCC--------------------------E
Confidence 999999999999999999999998 554 59999999999999874 4
Q ss_pred cCCCCCEEEEEEEEecCCceeeeeceeeEEe
Q 013889 400 FLEDGDEVTFTGFCKGNGYTVGFGTCSGKIV 430 (434)
Q Consensus 400 ~L~~GD~V~~~~~~~~~~~~~g~G~~~~~v~ 430 (434)
+|++||+|+++ ++ |+|++++++.
T Consensus 245 ~l~~GD~v~~~--i~------glG~l~~~~~ 267 (267)
T 2eb4_A 245 PARKGDTFHVD--YG------NMGSISCRFV 267 (267)
T ss_dssp ECCTTCEEEEE--CG------GGCEEEEEEC
T ss_pred ECCCCCEEEEE--Ec------CCCeEEEEEC
Confidence 78999999888 77 8999998873
No 17
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=63.57 E-value=7.3 Score=29.87 Aligned_cols=64 Identities=17% Similarity=0.322 Sum_probs=37.2
Q ss_pred cccCCCCEEEcCCCCCCccCCCCcEEEEE--ecCcccee-eCCCCCccCCCCCEEEEEEE-EecCCceeee
Q 013889 356 CNLRSGDLLGTGTISGPEPESLGCLLELT--WNGQKPLS-LDGFTRKFLEDGDEVTFTGF-CKGNGYTVGF 422 (434)
Q Consensus 356 ~tL~pGDlI~TGTp~Gvg~~~~G~~le~~--~~G~~~~~-l~~~~~~~L~~GD~V~~~~~-~~~~~~~~g~ 422 (434)
|.++.||+ .+|+..++.+ .|..+++. ..|.-+++ +.+..-..++.||.|.+... ++.+.++|.|
T Consensus 1 m~~~~G~i-v~G~V~~v~~--~G~fV~l~~~~~Gllh~sel~~~~~~~~~~Gd~V~v~V~~vd~~~~~i~l 68 (80)
T 2k52_A 1 MDVEPGKF-YKGVVTRIEK--YGAFINLNEQVRGLLRPRDMISLRLENLNVGDEIIVQAIDVRPEKREIDF 68 (80)
T ss_dssp CCCCTTCE-EEEEEEEEET--TEEEEEEETTEEEEECGGGCSSCCGGGCCTTCEEEEEEEEEETTTTEEEE
T ss_pred CCCCCCCE-EEEEEEEEeC--CEEEEEECCCCEEEEEHHHCCcccceeeCCCCEEEEEEEEEECCCCEEEE
Confidence 46788998 6789888764 57777764 22222221 11111137999999998842 2333355544
No 18
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=50.32 E-value=15 Score=29.11 Aligned_cols=12 Identities=25% Similarity=0.166 Sum_probs=10.4
Q ss_pred ccCCCCCEEEEE
Q 013889 399 KFLEDGDEVTFT 410 (434)
Q Consensus 399 ~~L~~GD~V~~~ 410 (434)
..|++||+|++=
T Consensus 70 ~~L~dGD~Vei~ 81 (87)
T 1tyg_B 70 VELCDRDVIEIV 81 (87)
T ss_dssp SBCCSSSEEEEE
T ss_pred cCCCCCCEEEEE
Confidence 579999999984
No 19
>3l53_A Putative fumarylacetoacetate isomerase/hydrolase; structural genomics, PSI-2, protein structure initiative; HET: TAR; 2.10A {Oleispira antarctica} PDB: 3v77_A*
Probab=49.12 E-value=10 Score=35.20 Aligned_cols=21 Identities=19% Similarity=-0.018 Sum_probs=15.2
Q ss_pred ccCCCCCEEEEEEEEecCCceeeeece
Q 013889 399 KFLEDGDEVTFTGFCKGNGYTVGFGTC 425 (434)
Q Consensus 399 ~~L~~GD~V~~~~~~~~~~~~~g~G~~ 425 (434)
..|++||+|+++ ++ .+|+|++
T Consensus 197 g~l~~GD~v~~~--i~----~lG~~~~ 217 (224)
T 3l53_A 197 GPLEVGDSLSAK--LS----LEDNVLL 217 (224)
T ss_dssp EECCTTCEEEEE--EE----ETTEEEE
T ss_pred EEcCCCCEEEEE--EE----CCCcccE
Confidence 369999999998 66 3445553
No 20
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=45.72 E-value=13 Score=27.33 Aligned_cols=20 Identities=10% Similarity=0.004 Sum_probs=14.3
Q ss_pred CCeEEEecchhhhccCHHHHHHHH
Q 013889 328 DSCVVTRSNFKYLYWTLTQQLAHH 351 (434)
Q Consensus 328 NGe~~q~~~t~~m~~s~~~lIa~~ 351 (434)
||+.++-... -++.++++++
T Consensus 6 Ng~~~~~~~~----~tv~~ll~~l 25 (66)
T 1f0z_A 6 NDQAMQCAAG----QTVHELLEQL 25 (66)
T ss_dssp SSCEECCCTT----CCHHHHHHHH
T ss_pred CCEEEEcCCC----CcHHHHHHHc
Confidence 9988763321 3889999886
No 21
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=43.26 E-value=22 Score=27.04 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=10.8
Q ss_pred CccCCCCCEEEEE
Q 013889 398 RKFLEDGDEVTFT 410 (434)
Q Consensus 398 ~~~L~~GD~V~~~ 410 (434)
...|++||+|++=
T Consensus 47 ~~~L~dGD~veIv 59 (73)
T 2kl0_A 47 ETPVTAGDEIEIL 59 (73)
T ss_dssp TCBCCTTCEEEEE
T ss_pred cccCCCCCEEEEE
Confidence 3579999999984
No 22
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=42.28 E-value=22 Score=28.75 Aligned_cols=64 Identities=20% Similarity=0.213 Sum_probs=39.3
Q ss_pred cccCCCCEEEcCCCCCCccCCCCcEEEEE--ecCcccee-eCCC----CCccCCCCCEEEEEEE-EecCCceeee
Q 013889 356 CNLRSGDLLGTGTISGPEPESLGCLLELT--WNGQKPLS-LDGF----TRKFLEDGDEVTFTGF-CKGNGYTVGF 422 (434)
Q Consensus 356 ~tL~pGDlI~TGTp~Gvg~~~~G~~le~~--~~G~~~~~-l~~~----~~~~L~~GD~V~~~~~-~~~~~~~~g~ 422 (434)
..++.||+ .+|+..++.. .|..+++. +.|.-+++ +.+. ....++.||+|.+... ++.++.+|.|
T Consensus 27 ~~~~~G~i-v~G~V~~v~~--~G~fV~l~~~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~~vd~~~~ki~L 98 (109)
T 2khj_A 27 ALNKKGAI-VTGKVTAVDA--KGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISL 98 (109)
T ss_dssp TTCCSSSE-EEEEEEEECS--SCEEEECSTTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEEETTTTEEEE
T ss_pred hcCCCCCE-EEEEEEEEEC--CeEEEEECCCCEEEEEHHHcCcccccChhhccCCCCEEEEEEEEEECCCCEEEE
Confidence 46899997 6799887754 47777763 33333322 2211 3457999999998842 2344455544
No 23
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=40.45 E-value=25 Score=27.16 Aligned_cols=22 Identities=14% Similarity=0.033 Sum_probs=14.2
Q ss_pred CCeEEEecchhhhccCHHHHHHHH
Q 013889 328 DSCVVTRSNFKYLYWTLTQQLAHH 351 (434)
Q Consensus 328 NGe~~q~~~t~~m~~s~~~lIa~~ 351 (434)
||+.++-..-. --++.++++.+
T Consensus 6 NGe~~e~~~~~--~~Tl~~LL~~l 27 (78)
T 2k5p_A 6 NGKPSTVDGAE--SLNVTELLSAL 27 (78)
T ss_dssp TTEEEECSSCS--CEEHHHHHHHH
T ss_pred CCEEEEcCCCC--CCcHHHHHHHc
Confidence 99988743000 14688999886
No 24
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=37.52 E-value=22 Score=29.96 Aligned_cols=64 Identities=20% Similarity=0.328 Sum_probs=38.7
Q ss_pred cccCCCCEEEcCCCCCCccCCCCcEEEEE--ecCcccee-eCCC----CCccCCCCCEEEEEEE-EecCCceeee
Q 013889 356 CNLRSGDLLGTGTISGPEPESLGCLLELT--WNGQKPLS-LDGF----TRKFLEDGDEVTFTGF-CKGNGYTVGF 422 (434)
Q Consensus 356 ~tL~pGDlI~TGTp~Gvg~~~~G~~le~~--~~G~~~~~-l~~~----~~~~L~~GD~V~~~~~-~~~~~~~~g~ 422 (434)
..++.||+ .+|+..++.. .|..+++. +.|.-.++ +.++ ....++.||+|.+... ++.+.++|.|
T Consensus 3 ~~~~vG~i-v~G~V~~i~~--~G~FV~l~~~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~L 74 (130)
T 2k4k_A 3 AKFEVGSV-YTGKVTGLQA--YGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISL 74 (130)
T ss_dssp CCCCTTCE-EEEEEEEEET--TEEEEEEETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEE
T ss_pred CcCCCCCE-EEEEEEEEeC--CeEEEEECCCcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEE
Confidence 35788996 5789888754 47777773 22322222 2222 2467999999998842 2333555554
No 25
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=37.21 E-value=20 Score=32.32 Aligned_cols=63 Identities=14% Similarity=0.131 Sum_probs=36.8
Q ss_pred cCCCCEEEcCCCCCCccCCCCcEEEEE----ecCcccee-eCCC----CCccCCCCCEEEEEE-EEecCCceeeee
Q 013889 358 LRSGDLLGTGTISGPEPESLGCLLELT----WNGQKPLS-LDGF----TRKFLEDGDEVTFTG-FCKGNGYTVGFG 423 (434)
Q Consensus 358 L~pGDlI~TGTp~Gvg~~~~G~~le~~----~~G~~~~~-l~~~----~~~~L~~GD~V~~~~-~~~~~~~~~g~G 423 (434)
++.||++ .||..++.. .|..+++. +.|.-.++ +..+ ...+++.||+|++.. .++.+.++|.|+
T Consensus 13 p~~G~iv-~G~V~~I~~--fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LS 85 (182)
T 1kl9_A 13 PEVEDVV-MVNVRSIAE--MGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLS 85 (182)
T ss_dssp CCTTCEE-EEEEEEECS--SEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEE
T ss_pred CCCCCEE-EEEEEEEec--cEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEE
Confidence 3789975 799988764 58888872 34443333 3222 467899999999884 234455666664
No 26
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=33.61 E-value=21 Score=29.50 Aligned_cols=62 Identities=24% Similarity=0.157 Sum_probs=34.2
Q ss_pred cCHHHHHHHHHHcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceeeCCCCCccCCCCCEEEEE
Q 013889 342 WTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFT 410 (434)
Q Consensus 342 ~s~~~lIa~~~S~~~tL~pGDlI~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~~~~~L~~GD~V~~~ 410 (434)
+++.++|.++..+...+ ..+++..+-+ ..+.+| +-+-++|.. +++-++...-|++||+|.+=
T Consensus 35 ~TV~dLl~~L~~~~~~~-r~~lf~~~g~---~~lrpg--IlVLVNg~d-~e~l~gldt~L~dgD~V~fi 96 (110)
T 2k9x_A 35 TNLNGLVQLLKTNYVKE-RPDLLVDQTG---QTLRPG--ILVLVNSCD-AEVVGGMDYVLNDGDTVEFI 96 (110)
T ss_dssp CCHHHHHHHHTTTTCCS-CHHHHBCSSS---SSBCTT--EEEEESSSB-HHHHTSSCCCCCSSCEEEEE
T ss_pred ccHHHHHHHHHHHcccc-chhhEecCCC---cccCCC--eEEEECCee-eeccCCcccCCCCcCEEEEe
Confidence 79999999985444455 3344432211 124455 334445422 22212234569999999873
No 27
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=27.48 E-value=45 Score=26.02 Aligned_cols=30 Identities=13% Similarity=-0.037 Sum_probs=19.7
Q ss_pred CcEEEEEecCccceeeCCCCCccCCCCCEEEEEEE
Q 013889 378 GCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGF 412 (434)
Q Consensus 378 G~~le~~~~G~~~~~l~~~~~~~L~~GD~V~~~~~ 412 (434)
|..+.+.+.|+-.. ...|+.+||.|.++.+
T Consensus 36 G~~~~c~i~GK~Rk-----~~I~Il~GD~V~ve~~ 65 (79)
T 3i4o_A 36 GHKVLAHISGKMRQ-----HYIRILPEDRVVVELS 65 (79)
T ss_dssp SCEEEEEECHHHHH-----TTCCCCTTCEEEEEEE
T ss_pred CCEEEEEeCcceec-----CCccCCCCCEEEEEEC
Confidence 44555655553211 3578999999999954
No 28
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.92 E-value=70 Score=26.50 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=13.6
Q ss_pred CCccCCCCCEEEEEEE
Q 013889 397 TRKFLEDGDEVTFTGF 412 (434)
Q Consensus 397 ~~~~L~~GD~V~~~~~ 412 (434)
...|+++||.|.++-+
T Consensus 50 k~IwI~~GD~VlVe~~ 65 (111)
T 2dgy_A 50 KNIWIKRGDFLIVDPI 65 (111)
T ss_dssp SCCCCCSSCEEEEEEC
T ss_pred ccEEEcCCCEEEEEec
Confidence 4789999999999933
No 29
>3esi_A Uncharacterized protein; protein from erwinia carotovora subsp. atroseptica (pectobacterium atrosepticum), structural genomics; 2.50A {Pectobacterium atrosepticum}
Probab=22.44 E-value=81 Score=26.68 Aligned_cols=26 Identities=8% Similarity=0.169 Sum_probs=19.1
Q ss_pred CccCCCCCEEEEEEEEecCCceeeee
Q 013889 398 RKFLEDGDEVTFTGFCKGNGYTVGFG 423 (434)
Q Consensus 398 ~~~L~~GD~V~~~~~~~~~~~~~g~G 423 (434)
.+.+.|||+++++..+......++|-
T Consensus 75 ~~~V~PGD~l~l~v~~~~~~~~l~F~ 100 (129)
T 3esi_A 75 QQPILPGKTLRLVLIWHAGKQSLTFS 100 (129)
T ss_dssp CSCCCTTCEEEEEEEEETTTTEEEEE
T ss_pred CcccCCCCEEEEEEEEEecCCcEEEE
Confidence 46678999999997777666555554
No 30
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=21.24 E-value=49 Score=29.44 Aligned_cols=61 Identities=15% Similarity=0.152 Sum_probs=37.7
Q ss_pred CCCEEEcCCCCCCccCCCCcEEEEE----ecCcccee-eCCC----CCccCCCCCEEEEEE-EEecCCceeeee
Q 013889 360 SGDLLGTGTISGPEPESLGCLLELT----WNGQKPLS-LDGF----TRKFLEDGDEVTFTG-FCKGNGYTVGFG 423 (434)
Q Consensus 360 pGDlI~TGTp~Gvg~~~~G~~le~~----~~G~~~~~-l~~~----~~~~L~~GD~V~~~~-~~~~~~~~~g~G 423 (434)
.||++ +||..++.. .|..+++. +.|.-+++ +.+. ....++.||.|.+.. .++.+.++|.|.
T Consensus 15 ~G~iv-~G~V~~i~~--fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LS 85 (175)
T 2a19_A 15 IDDIV-MVNVQQIAE--MGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLS 85 (175)
T ss_dssp TTCEE-EEEEEEEET--TEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEEEE
T ss_pred CCCEE-EEEEEEEec--ceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEECCCCeEEEE
Confidence 79875 689888754 58888872 33433333 3222 457899999999884 234445666654
Done!