Query 013890
Match_columns 434
No_of_seqs 312 out of 3071
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 08:25:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013890.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013890hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09754 phenylpropionate diox 100.0 1.5E-54 3.4E-59 417.0 49.8 392 4-428 2-395 (396)
2 COG1249 Lpd Pyruvate/2-oxoglut 100.0 2.2E-55 4.8E-60 418.1 36.0 398 3-434 2-450 (454)
3 PRK13512 coenzyme A disulfide 100.0 3.3E-52 7.1E-57 405.1 42.6 400 7-432 3-425 (438)
4 KOG1336 Monodehydroascorbate/f 100.0 1.2E-52 2.7E-57 384.5 35.1 401 5-433 74-475 (478)
5 PRK09564 coenzyme A disulfide 100.0 6.7E-52 1.5E-56 406.0 42.7 406 7-433 2-432 (444)
6 PRK06370 mercuric reductase; V 100.0 1.2E-52 2.6E-57 412.1 34.3 400 1-433 1-448 (463)
7 PRK05249 soluble pyridine nucl 100.0 2.8E-52 6.1E-57 410.1 33.6 400 1-433 1-448 (461)
8 TIGR01421 gluta_reduc_1 glutat 100.0 8.1E-52 1.8E-56 403.0 34.0 396 4-434 1-446 (450)
9 TIGR01424 gluta_reduc_2 glutat 100.0 5.6E-52 1.2E-56 404.7 32.6 395 5-434 2-442 (446)
10 PRK06116 glutathione reductase 100.0 1.6E-51 3.4E-56 403.0 35.1 398 2-434 1-446 (450)
11 PLN02507 glutathione reductase 100.0 2.6E-51 5.6E-56 402.9 36.3 395 5-433 25-478 (499)
12 PRK06467 dihydrolipoamide dehy 100.0 3.4E-51 7.4E-56 400.9 32.8 396 2-433 1-450 (471)
13 PTZ00058 glutathione reductase 100.0 9.7E-51 2.1E-55 399.8 35.5 404 4-433 47-552 (561)
14 PRK14694 putative mercuric red 100.0 3.3E-50 7.2E-55 394.7 37.7 398 1-433 1-448 (468)
15 TIGR01423 trypano_reduc trypan 100.0 1.3E-50 2.8E-55 395.4 32.3 395 4-433 2-466 (486)
16 PRK07845 flavoprotein disulfid 100.0 3.3E-50 7.2E-55 393.8 34.4 396 6-433 2-451 (466)
17 PRK07846 mycothione reductase; 100.0 6E-50 1.3E-54 389.6 35.4 393 5-433 1-441 (451)
18 PRK14989 nitrite reductase sub 100.0 2.8E-48 6.2E-53 398.6 48.6 388 6-426 4-403 (847)
19 PLN02546 glutathione reductase 100.0 4.3E-50 9.3E-55 395.5 32.9 393 5-433 79-527 (558)
20 PRK08010 pyridine nucleotide-d 100.0 4E-50 8.8E-55 392.0 32.5 396 4-433 2-432 (441)
21 PRK06416 dihydrolipoamide dehy 100.0 1.3E-49 2.7E-54 391.1 35.8 397 4-433 3-447 (462)
22 PRK05976 dihydrolipoamide dehy 100.0 7.5E-50 1.6E-54 392.9 33.3 402 2-433 1-457 (472)
23 PRK06115 dihydrolipoamide dehy 100.0 1.7E-49 3.7E-54 388.8 35.2 397 5-433 3-451 (466)
24 PRK07818 dihydrolipoamide dehy 100.0 2E-49 4.2E-54 389.3 34.4 397 1-433 1-451 (466)
25 TIGR02053 MerA mercuric reduct 100.0 1.1E-49 2.3E-54 391.5 32.4 393 6-432 1-442 (463)
26 TIGR02374 nitri_red_nirB nitri 100.0 3.2E-47 7E-52 391.8 47.7 385 8-426 1-391 (785)
27 PRK06912 acoL dihydrolipoamide 100.0 9.7E-49 2.1E-53 383.3 33.4 393 7-433 2-443 (458)
28 PRK13748 putative mercuric red 100.0 2.4E-48 5.1E-53 391.2 37.0 395 4-433 97-541 (561)
29 PTZ00153 lipoamide dehydrogena 100.0 5.1E-48 1.1E-52 385.0 38.1 399 5-433 116-645 (659)
30 PRK14727 putative mercuric red 100.0 3.8E-48 8.3E-53 380.5 36.6 395 4-433 15-459 (479)
31 PRK07251 pyridine nucleotide-d 100.0 1.6E-48 3.5E-53 380.5 33.1 393 5-433 3-431 (438)
32 TIGR01438 TGR thioredoxin and 100.0 1.3E-48 2.8E-53 382.4 32.0 394 5-433 2-463 (484)
33 PRK04965 NADH:flavorubredoxin 100.0 8.8E-47 1.9E-51 361.3 44.0 361 6-403 3-367 (377)
34 TIGR03452 mycothione_red mycot 100.0 4.6E-48 1E-52 376.9 35.4 393 5-433 2-444 (452)
35 PRK06327 dihydrolipoamide dehy 100.0 3E-48 6.4E-53 381.3 34.0 399 2-433 1-460 (475)
36 PRK06292 dihydrolipoamide dehy 100.0 5.2E-48 1.1E-52 379.7 33.8 396 4-433 2-445 (460)
37 PTZ00052 thioredoxin reductase 100.0 1.3E-47 2.9E-52 377.1 33.2 398 2-434 2-474 (499)
38 TIGR01350 lipoamide_DH dihydro 100.0 7.7E-47 1.7E-51 371.8 35.2 398 5-433 1-446 (461)
39 TIGR03385 CoA_CoA_reduc CoA-di 100.0 2.8E-45 6.1E-50 356.9 38.5 391 19-432 1-418 (427)
40 KOG1335 Dihydrolipoamide dehyd 100.0 6.5E-46 1.4E-50 328.3 23.6 398 4-433 38-490 (506)
41 COG1251 NirB NAD(P)H-nitrite r 100.0 1.1E-44 2.3E-49 347.0 33.4 383 5-421 3-391 (793)
42 KOG0405 Pyridine nucleotide-di 100.0 2.8E-44 6E-49 314.0 26.5 398 4-433 19-467 (478)
43 COG1252 Ndh NADH dehydrogenase 100.0 6.9E-42 1.5E-46 317.4 28.8 312 5-345 3-343 (405)
44 PTZ00318 NADH dehydrogenase-li 100.0 3E-40 6.4E-45 320.0 29.6 301 4-336 9-350 (424)
45 TIGR03169 Nterm_to_SelD pyridi 100.0 1.1E-38 2.4E-43 304.5 31.9 306 7-342 1-319 (364)
46 KOG4716 Thioredoxin reductase 100.0 3.1E-38 6.7E-43 275.2 23.9 399 4-434 18-484 (503)
47 PRK10262 thioredoxin reductase 100.0 3.1E-37 6.7E-42 289.2 26.6 298 3-333 4-314 (321)
48 TIGR01292 TRX_reduct thioredox 100.0 1E-36 2.3E-41 283.8 29.1 288 6-331 1-298 (300)
49 TIGR03140 AhpF alkyl hydropero 100.0 1.2E-36 2.5E-41 301.3 25.7 292 4-332 211-511 (515)
50 KOG1346 Programmed cell death 100.0 2.2E-36 4.7E-41 270.3 21.7 405 5-424 178-652 (659)
51 COG0492 TrxB Thioredoxin reduc 100.0 7.2E-36 1.6E-40 271.6 25.5 290 4-333 2-300 (305)
52 TIGR03143 AhpF_homolog putativ 100.0 9.2E-36 2E-40 297.0 28.6 293 2-332 1-307 (555)
53 PRK15317 alkyl hydroperoxide r 100.0 1.3E-35 2.9E-40 294.3 26.8 292 5-333 211-511 (517)
54 TIGR01316 gltA glutamate synth 100.0 7.6E-35 1.7E-39 283.6 24.9 286 4-331 132-447 (449)
55 PRK12831 putative oxidoreducta 100.0 2.1E-34 4.4E-39 280.9 26.4 290 4-334 139-461 (464)
56 COG0446 HcaD Uncharacterized N 100.0 9.9E-32 2.1E-36 262.0 38.9 388 8-421 1-407 (415)
57 PRK09853 putative selenate red 100.0 2E-32 4.4E-37 279.6 28.1 281 5-334 539-842 (1019)
58 PRK12778 putative bifunctional 100.0 9.8E-33 2.1E-37 285.0 25.3 288 5-334 431-750 (752)
59 PRK11749 dihydropyrimidine deh 100.0 6E-32 1.3E-36 264.8 25.0 287 5-335 140-453 (457)
60 PRK12770 putative glutamate sy 100.0 2.4E-31 5.1E-36 252.1 26.8 290 4-333 17-349 (352)
61 PRK12779 putative bifunctional 100.0 1.6E-31 3.5E-36 277.5 27.3 288 5-334 306-627 (944)
62 PRK12775 putative trifunctiona 100.0 5.9E-31 1.3E-35 275.8 25.5 290 5-335 430-756 (1006)
63 PRK12810 gltD glutamate syntha 100.0 8.3E-31 1.8E-35 257.1 23.7 293 5-335 143-466 (471)
64 TIGR03315 Se_ygfK putative sel 100.0 4.6E-30 1E-34 263.8 24.7 281 5-333 537-839 (1012)
65 KOG2495 NADH-dehydrogenase (ub 100.0 3.5E-30 7.5E-35 232.5 19.8 295 4-330 54-393 (491)
66 TIGR01318 gltD_gamma_fam gluta 100.0 2.7E-29 5.8E-34 245.5 26.7 285 5-332 141-464 (467)
67 PRK12814 putative NADPH-depend 100.0 1.4E-29 3E-34 256.6 24.0 286 5-336 193-503 (652)
68 PRK12769 putative oxidoreducta 100.0 8.2E-29 1.8E-33 252.1 28.6 286 5-333 327-651 (654)
69 PRK13984 putative oxidoreducta 100.0 1.1E-28 2.5E-33 249.7 26.3 282 5-333 283-601 (604)
70 TIGR01317 GOGAT_sm_gam glutama 100.0 1.1E-28 2.3E-33 242.1 24.2 294 5-335 143-480 (485)
71 TIGR01372 soxA sarcosine oxida 100.0 2.1E-27 4.5E-32 250.8 29.7 281 5-333 163-471 (985)
72 COG3634 AhpF Alkyl hydroperoxi 100.0 1.2E-29 2.6E-34 222.5 10.2 290 5-331 211-512 (520)
73 PLN02852 ferredoxin-NADP+ redu 100.0 1.4E-27 2.9E-32 230.6 24.1 292 5-333 26-421 (491)
74 PRK12809 putative oxidoreducta 100.0 2.3E-27 5E-32 240.4 26.2 287 5-334 310-635 (639)
75 KOG0404 Thioredoxin reductase 100.0 3.4E-28 7.4E-33 200.7 15.5 281 2-302 5-296 (322)
76 PRK12771 putative glutamate sy 99.9 4.5E-26 9.7E-31 228.6 25.1 285 5-335 137-445 (564)
77 PLN02172 flavin-containing mon 99.9 1.1E-24 2.5E-29 211.2 23.2 287 4-333 9-352 (461)
78 KOG3851 Sulfide:quinone oxidor 99.9 1.1E-22 2.4E-27 177.0 18.0 308 4-336 38-363 (446)
79 KOG2755 Oxidoreductase [Genera 99.9 2.5E-22 5.4E-27 170.1 14.1 267 7-301 1-322 (334)
80 PF00743 FMO-like: Flavin-bind 99.9 3.8E-21 8.3E-26 189.0 19.3 299 6-333 2-396 (531)
81 COG0493 GltD NADPH-dependent g 99.9 3.9E-21 8.4E-26 184.0 14.2 288 6-330 124-447 (457)
82 PRK06567 putative bifunctional 99.8 1.6E-19 3.4E-24 183.1 23.6 273 5-331 383-767 (1028)
83 COG3486 IucD Lysine/ornithine 99.8 1E-18 2.2E-23 158.4 26.2 316 1-332 1-413 (436)
84 PF13434 K_oxygenase: L-lysine 99.8 1.1E-19 2.3E-24 169.7 14.6 248 5-262 2-340 (341)
85 PF07992 Pyr_redox_2: Pyridine 99.8 2.8E-21 6.1E-26 168.9 1.3 187 7-302 1-200 (201)
86 PF13738 Pyr_redox_3: Pyridine 99.8 3.9E-19 8.5E-24 155.6 9.4 177 9-198 1-202 (203)
87 COG2072 TrkA Predicted flavopr 99.8 1.1E-17 2.3E-22 162.0 17.1 189 1-199 4-211 (443)
88 KOG0399 Glutamate synthase [Am 99.7 7.4E-18 1.6E-22 167.4 11.8 287 5-331 1785-2117(2142)
89 PRK05329 anaerobic glycerol-3- 99.7 7.9E-16 1.7E-20 146.9 24.4 174 151-332 203-419 (422)
90 KOG1399 Flavin-containing mono 99.7 9.3E-17 2E-21 153.2 14.3 241 3-271 4-277 (448)
91 PTZ00188 adrenodoxin reductase 99.7 3.9E-15 8.5E-20 141.9 17.9 274 5-307 39-422 (506)
92 COG1148 HdrA Heterodisulfide r 99.6 2.3E-14 4.9E-19 132.3 19.6 197 112-328 298-539 (622)
93 KOG1800 Ferredoxin/adrenodoxin 99.6 6.9E-15 1.5E-19 131.8 13.4 293 5-333 20-406 (468)
94 PF00070 Pyr_redox: Pyridine n 99.5 1.4E-13 2.9E-18 100.6 11.3 80 165-247 1-80 (80)
95 COG2081 Predicted flavoprotein 99.5 1.9E-12 4E-17 118.4 15.0 84 178-263 84-169 (408)
96 COG0029 NadB Aspartate oxidase 99.4 5.4E-12 1.2E-16 118.1 12.5 223 85-333 147-397 (518)
97 COG4529 Uncharacterized protei 99.4 4.9E-10 1.1E-14 105.4 24.9 183 6-196 2-231 (474)
98 TIGR03378 glycerol3P_GlpB glyc 99.2 2.6E-09 5.7E-14 101.1 22.9 139 184-330 245-419 (419)
99 PRK07804 L-aspartate oxidase; 99.2 9.5E-10 2.1E-14 110.1 19.1 36 4-42 15-50 (541)
100 COG3075 GlpB Anaerobic glycero 99.2 4.8E-10 1E-14 99.3 13.6 128 200-332 253-416 (421)
101 COG0579 Predicted dehydrogenas 99.2 1.1E-09 2.4E-14 103.7 16.8 60 204-264 152-212 (429)
102 PRK08401 L-aspartate oxidase; 99.2 9.5E-11 2.1E-15 115.3 10.1 54 275-331 309-364 (466)
103 TIGR00551 nadB L-aspartate oxi 99.2 1.8E-10 3.9E-15 114.1 11.7 56 275-332 332-388 (488)
104 PF03486 HI0933_like: HI0933-l 99.2 2.4E-10 5.3E-15 109.1 11.7 85 177-263 81-166 (409)
105 PLN02463 lycopene beta cyclase 99.1 4.7E-09 1E-13 101.9 19.2 120 5-128 28-171 (447)
106 PRK06854 adenylylsulfate reduc 99.1 3.7E-10 7.9E-15 114.3 11.9 35 5-42 11-47 (608)
107 PRK08275 putative oxidoreducta 99.1 2.7E-10 5.8E-15 114.5 9.8 37 5-42 9-45 (554)
108 PRK06175 L-aspartate oxidase; 99.1 3.7E-10 7.9E-15 109.9 10.1 55 275-332 330-386 (433)
109 PRK08071 L-aspartate oxidase; 99.1 7E-10 1.5E-14 110.2 11.8 56 275-332 331-387 (510)
110 PRK13800 putative oxidoreducta 99.1 1.2E-09 2.7E-14 115.5 14.0 35 5-42 13-47 (897)
111 PRK09077 L-aspartate oxidase; 99.1 6.7E-09 1.5E-13 104.0 17.9 56 275-332 352-408 (536)
112 PRK05945 sdhA succinate dehydr 99.1 2.5E-10 5.5E-15 115.1 7.4 38 4-42 2-39 (575)
113 PRK06452 sdhA succinate dehydr 99.1 2.1E-08 4.6E-13 100.9 21.1 37 3-42 3-39 (566)
114 PRK06069 sdhA succinate dehydr 99.0 2.3E-09 4.9E-14 108.4 13.3 39 1-42 1-42 (577)
115 PRK07512 L-aspartate oxidase; 99.0 1.7E-09 3.6E-14 107.6 11.7 56 275-332 340-396 (513)
116 PRK07843 3-ketosteroid-delta-1 99.0 8E-10 1.7E-14 111.0 9.4 106 162-269 159-276 (557)
117 PRK09897 hypothetical protein; 99.0 4.3E-09 9.4E-14 103.8 14.2 167 6-185 2-213 (534)
118 PRK11728 hydroxyglutarate oxid 99.0 1.2E-08 2.6E-13 98.6 17.1 58 204-264 148-205 (393)
119 PRK10157 putative oxidoreducta 99.0 1.9E-09 4.2E-14 104.9 11.5 127 1-130 1-168 (428)
120 PRK09231 fumarate reductase fl 99.0 4.1E-09 8.8E-14 106.3 14.0 72 259-332 339-413 (582)
121 TIGR01176 fum_red_Fp fumarate 99.0 8.3E-10 1.8E-14 111.0 8.8 56 275-332 356-412 (580)
122 PRK07573 sdhA succinate dehydr 99.0 5.3E-09 1.1E-13 106.4 14.6 35 5-42 35-69 (640)
123 PRK12842 putative succinate de 99.0 7.6E-10 1.6E-14 111.8 8.5 102 162-264 156-276 (574)
124 TIGR01812 sdhA_frdA_Gneg succi 99.0 9.3E-10 2E-14 111.2 8.8 56 275-332 341-401 (566)
125 PRK08626 fumarate reductase fl 99.0 5.4E-10 1.2E-14 113.8 6.4 39 1-42 1-39 (657)
126 TIGR01790 carotene-cycl lycope 99.0 2.1E-08 4.4E-13 96.9 16.7 116 7-126 1-141 (388)
127 PRK10015 oxidoreductase; Provi 99.0 5.1E-09 1.1E-13 101.9 12.4 125 1-128 1-166 (429)
128 PRK06263 sdhA succinate dehydr 99.0 5.3E-09 1.2E-13 105.0 12.7 55 275-332 347-402 (543)
129 PLN02815 L-aspartate oxidase 99.0 4.3E-09 9.3E-14 105.8 11.8 55 275-331 376-431 (594)
130 PF05834 Lycopene_cycl: Lycope 99.0 2.1E-07 4.5E-12 89.1 22.9 116 7-127 1-143 (374)
131 PRK07395 L-aspartate oxidase; 99.0 1.8E-09 3.9E-14 108.0 8.9 54 275-330 346-400 (553)
132 PF01266 DAO: FAD dependent ox 99.0 7.4E-10 1.6E-14 105.6 5.7 60 204-265 146-205 (358)
133 TIGR02061 aprA adenosine phosp 98.9 2.4E-09 5.3E-14 107.6 9.0 33 7-42 1-37 (614)
134 PRK06847 hypothetical protein; 98.9 5.2E-09 1.1E-13 100.6 10.6 124 2-128 1-165 (375)
135 COG0644 FixC Dehydrogenases (f 98.9 4.7E-09 1E-13 101.4 10.3 123 5-130 3-156 (396)
136 PRK07190 hypothetical protein; 98.9 6.2E-09 1.4E-13 102.8 10.5 127 1-130 1-169 (487)
137 PRK08641 sdhA succinate dehydr 98.9 6.3E-09 1.4E-13 105.1 10.5 54 275-331 354-408 (589)
138 PRK04176 ribulose-1,5-biphosph 98.9 1.3E-07 2.7E-12 85.2 17.4 175 155-333 17-254 (257)
139 COG1053 SdhA Succinate dehydro 98.9 1.6E-08 3.4E-13 100.4 11.0 39 1-42 2-40 (562)
140 TIGR02032 GG-red-SF geranylger 98.9 1.3E-08 2.8E-13 94.3 9.9 120 6-128 1-150 (295)
141 TIGR01292 TRX_reduct thioredox 98.9 4.8E-08 1E-12 90.8 13.7 99 165-266 2-115 (300)
142 TIGR00292 thiazole biosynthesi 98.8 3.2E-07 6.8E-12 82.4 18.2 172 157-332 15-252 (254)
143 TIGR01811 sdhA_Bsu succinate d 98.8 4.1E-08 8.9E-13 99.3 13.7 54 275-331 369-423 (603)
144 PRK06834 hypothetical protein; 98.8 2.2E-08 4.9E-13 99.0 11.3 124 5-131 3-161 (488)
145 PRK08773 2-octaprenyl-3-methyl 98.8 1.3E-08 2.9E-13 98.4 9.6 127 1-130 1-173 (392)
146 PRK06134 putative FAD-binding 98.8 1.3E-08 2.8E-13 102.8 9.7 100 163-263 161-278 (581)
147 PF02852 Pyr_redox_dim: Pyridi 98.8 2.7E-09 5.8E-14 83.0 3.8 88 344-433 1-105 (110)
148 PTZ00363 rab-GDP dissociation 98.8 2.4E-07 5.2E-12 89.7 18.0 62 204-265 231-292 (443)
149 PRK04176 ribulose-1,5-biphosph 98.8 1.6E-08 3.5E-13 91.0 9.2 117 5-126 25-173 (257)
150 TIGR00292 thiazole biosynthesi 98.8 2.8E-08 6E-13 89.1 10.5 116 5-125 21-169 (254)
151 PRK07494 2-octaprenyl-6-methox 98.8 2.2E-08 4.9E-13 96.7 10.3 39 1-42 3-41 (388)
152 PRK09126 hypothetical protein; 98.8 1.8E-08 4E-13 97.4 9.4 126 1-131 1-172 (392)
153 PRK00711 D-amino acid dehydrog 98.8 2.3E-07 5.1E-12 90.5 17.2 58 204-263 200-257 (416)
154 PRK06184 hypothetical protein; 98.8 3E-08 6.4E-13 99.0 10.6 124 4-130 2-172 (502)
155 PRK13977 myosin-cross-reactive 98.8 2.5E-07 5.5E-12 90.7 16.1 90 173-262 192-292 (576)
156 TIGR01373 soxB sarcosine oxida 98.8 3.4E-07 7.3E-12 89.1 17.0 58 204-262 182-239 (407)
157 PRK08274 tricarballylate dehyd 98.8 4.9E-07 1.1E-11 89.5 18.0 64 204-268 130-198 (466)
158 PRK07045 putative monooxygenas 98.7 3E-08 6.4E-13 95.8 8.9 125 1-128 1-167 (388)
159 PRK07333 2-octaprenyl-6-methox 98.7 4.5E-08 9.8E-13 95.1 10.3 122 6-130 2-171 (403)
160 TIGR01377 soxA_mon sarcosine o 98.7 4.2E-07 9.2E-12 87.5 16.9 56 204-262 144-199 (380)
161 TIGR02734 crtI_fam phytoene de 98.7 7.1E-08 1.5E-12 96.4 11.6 59 205-264 219-277 (502)
162 COG2509 Uncharacterized FAD-de 98.7 3.6E-07 7.9E-12 85.2 15.1 85 182-267 150-234 (486)
163 PRK12409 D-amino acid dehydrog 98.7 2.8E-07 6E-12 89.8 15.1 57 205-263 197-258 (410)
164 PF04820 Trp_halogenase: Trypt 98.7 3.4E-08 7.3E-13 96.6 8.1 59 205-264 154-212 (454)
165 TIGR03329 Phn_aa_oxid putative 98.7 2.3E-07 4.9E-12 91.6 14.1 54 204-261 182-235 (460)
166 PRK08020 ubiF 2-octaprenyl-3-m 98.7 8.8E-08 1.9E-12 92.7 10.9 125 1-128 1-171 (391)
167 PRK06185 hypothetical protein; 98.7 5.6E-08 1.2E-12 94.5 9.4 38 2-42 3-40 (407)
168 TIGR03364 HpnW_proposed FAD de 98.7 3.9E-07 8.4E-12 87.3 15.0 53 204-263 144-197 (365)
169 PRK08244 hypothetical protein; 98.7 6.8E-08 1.5E-12 96.3 10.0 123 5-130 2-163 (493)
170 COG1233 Phytoene dehydrogenase 98.7 6E-07 1.3E-11 88.9 16.5 56 205-261 224-279 (487)
171 COG1635 THI4 Ribulose 1,5-bisp 98.7 6.1E-08 1.3E-12 81.5 7.9 36 5-43 30-65 (262)
172 PRK11259 solA N-methyltryptoph 98.7 4.9E-07 1.1E-11 86.9 15.5 57 204-263 148-204 (376)
173 PTZ00383 malate:quinone oxidor 98.7 2.6E-07 5.7E-12 90.8 13.6 57 205-263 211-273 (497)
174 COG0654 UbiH 2-polyprenyl-6-me 98.7 5E-07 1.1E-11 87.1 15.1 61 204-266 103-165 (387)
175 PRK08850 2-octaprenyl-6-methox 98.7 5.2E-08 1.1E-12 94.6 8.3 126 1-130 1-172 (405)
176 TIGR00275 flavoprotein, HI0933 98.7 3.2E-07 7E-12 88.6 13.7 83 177-263 77-160 (400)
177 PLN02612 phytoene desaturase 98.7 6.6E-07 1.4E-11 90.2 16.1 58 204-261 307-364 (567)
178 PRK05192 tRNA uridine 5-carbox 98.7 1.3E-07 2.8E-12 93.7 10.6 119 3-125 2-156 (618)
179 PRK07251 pyridine nucleotide-d 98.7 2.8E-07 6E-12 90.4 13.0 99 5-129 157-256 (438)
180 PRK07236 hypothetical protein; 98.7 2.2E-07 4.8E-12 89.6 12.1 122 4-128 5-156 (386)
181 PRK08013 oxidoreductase; Provi 98.7 8.8E-08 1.9E-12 92.8 9.3 123 5-130 3-172 (400)
182 PRK08849 2-octaprenyl-3-methyl 98.7 8.1E-08 1.7E-12 92.6 9.0 123 5-130 3-171 (384)
183 PRK01747 mnmC bifunctional tRN 98.7 5.5E-07 1.2E-11 92.9 15.3 57 204-263 407-463 (662)
184 TIGR01350 lipoamide_DH dihydro 98.6 2.1E-07 4.5E-12 92.0 11.5 99 5-129 170-272 (461)
185 PRK05714 2-octaprenyl-3-methyl 98.6 1.4E-07 2.9E-12 91.8 9.4 123 5-130 2-172 (405)
186 PRK06126 hypothetical protein; 98.6 2.5E-07 5.5E-12 93.4 11.2 37 3-42 5-41 (545)
187 PRK08163 salicylate hydroxylas 98.6 1.2E-07 2.5E-12 92.0 8.5 124 1-128 1-168 (396)
188 PRK06481 fumarate reductase fl 98.6 1.2E-06 2.5E-11 87.4 15.6 64 204-268 189-257 (506)
189 PF13454 NAD_binding_9: FAD-NA 98.6 5.7E-07 1.2E-11 74.7 11.3 34 9-42 1-36 (156)
190 TIGR02731 phytoene_desat phyto 98.6 2.3E-06 5E-11 84.4 17.6 58 204-261 212-274 (453)
191 PRK07364 2-octaprenyl-6-methox 98.6 1.8E-07 4E-12 91.2 9.6 37 4-43 17-53 (415)
192 PRK07608 ubiquinone biosynthes 98.6 1.8E-07 3.8E-12 90.4 9.2 122 5-130 5-171 (388)
193 PRK05732 2-octaprenyl-6-methox 98.6 1.5E-07 3.2E-12 91.2 8.6 46 85-130 126-173 (395)
194 PRK08132 FAD-dependent oxidore 98.6 2.1E-07 4.6E-12 93.9 9.8 36 4-42 22-57 (547)
195 PLN02697 lycopene epsilon cycl 98.6 1.7E-07 3.6E-12 92.7 8.7 116 5-126 108-248 (529)
196 KOG2820 FAD-dependent oxidored 98.6 1.2E-07 2.6E-12 84.8 6.5 61 204-264 152-213 (399)
197 COG0665 DadA Glycine/D-amino a 98.6 2.4E-06 5.1E-11 82.6 16.3 57 204-263 155-212 (387)
198 COG1635 THI4 Ribulose 1,5-bisp 98.6 2.7E-06 5.9E-11 71.8 14.1 174 156-333 23-259 (262)
199 PRK15317 alkyl hydroperoxide r 98.6 2.5E-06 5.3E-11 85.4 16.3 101 163-265 211-324 (517)
200 PRK11445 putative oxidoreducta 98.6 2.4E-07 5.3E-12 88.0 8.8 119 6-128 2-159 (351)
201 PRK06183 mhpA 3-(3-hydroxyphen 98.5 4.3E-07 9.3E-12 91.4 10.8 123 4-130 9-178 (538)
202 TIGR03140 AhpF alkyl hydropero 98.5 1.5E-06 3.4E-11 86.8 14.3 102 162-265 211-325 (515)
203 PF13738 Pyr_redox_3: Pyridine 98.5 9.5E-07 2.1E-11 77.0 11.3 98 167-266 1-143 (203)
204 PF01946 Thi4: Thi4 family; PD 98.5 1.7E-07 3.7E-12 79.3 6.1 36 5-43 17-52 (230)
205 PLN00093 geranylgeranyl diphos 98.5 4.9E-07 1.1E-11 88.4 10.3 36 4-42 38-73 (450)
206 TIGR02023 BchP-ChlP geranylger 98.5 2.6E-07 5.5E-12 89.2 7.9 32 6-40 1-32 (388)
207 PRK09754 phenylpropionate diox 98.5 8.3E-07 1.8E-11 85.8 11.3 99 163-265 3-114 (396)
208 PF12831 FAD_oxidored: FAD dep 98.5 1.1E-07 2.3E-12 92.8 5.0 115 7-124 1-148 (428)
209 PRK07588 hypothetical protein; 98.5 7.5E-07 1.6E-11 86.1 10.9 121 7-130 2-162 (391)
210 TIGR01984 UbiH 2-polyprenyl-6- 98.5 3.6E-07 7.8E-12 88.1 8.6 119 7-128 1-164 (382)
211 PF00070 Pyr_redox: Pyridine n 98.5 2.9E-07 6.4E-12 66.9 6.1 78 7-110 1-80 (80)
212 PRK11101 glpA sn-glycerol-3-ph 98.5 5.2E-07 1.1E-11 90.6 9.9 59 204-263 148-211 (546)
213 TIGR01988 Ubi-OHases Ubiquinon 98.5 4.5E-07 9.8E-12 87.5 9.1 119 7-128 1-165 (385)
214 PLN02172 flavin-containing mon 98.5 4.2E-06 9.1E-11 82.0 15.9 134 162-299 9-214 (461)
215 TIGR01789 lycopene_cycl lycope 98.5 1.3E-06 2.9E-11 83.3 11.8 113 7-127 1-139 (370)
216 PRK06753 hypothetical protein; 98.5 1.3E-06 2.9E-11 83.8 11.9 119 7-128 2-154 (373)
217 TIGR02733 desat_CrtD C-3',4' d 98.5 1E-06 2.2E-11 87.8 11.3 58 204-262 231-293 (492)
218 PF00890 FAD_binding_2: FAD bi 98.5 1.7E-06 3.6E-11 84.5 12.5 60 204-264 140-204 (417)
219 PRK05868 hypothetical protein; 98.5 8.9E-07 1.9E-11 84.8 10.3 120 6-128 2-162 (372)
220 PRK07121 hypothetical protein; 98.5 6.9E-06 1.5E-10 81.8 16.9 65 204-268 176-245 (492)
221 PF01134 GIDA: Glucose inhibit 98.5 1.7E-07 3.8E-12 87.9 5.1 113 7-124 1-150 (392)
222 PRK07233 hypothetical protein; 98.5 1.2E-06 2.6E-11 86.0 11.3 56 205-262 198-253 (434)
223 PF01494 FAD_binding_3: FAD bi 98.5 2.4E-07 5.3E-12 88.2 5.9 36 5-43 1-36 (356)
224 PRK08205 sdhA succinate dehydr 98.5 8.2E-07 1.8E-11 89.9 10.0 38 1-42 1-38 (583)
225 PRK06847 hypothetical protein; 98.4 4E-06 8.6E-11 80.6 14.1 102 163-266 4-166 (375)
226 TIGR01320 mal_quin_oxido malat 98.4 9.5E-06 2.1E-10 80.1 16.9 59 204-263 177-240 (483)
227 PRK06996 hypothetical protein; 98.4 7.2E-07 1.6E-11 86.4 8.8 123 1-124 7-172 (398)
228 PLN02661 Putative thiazole syn 98.4 1.1E-06 2.4E-11 81.2 9.5 36 5-43 92-128 (357)
229 TIGR02730 carot_isom carotene 98.4 3.2E-07 7E-12 91.3 6.0 57 205-262 229-285 (493)
230 PRK13339 malate:quinone oxidor 98.4 2.6E-05 5.6E-10 76.7 19.0 59 205-264 184-248 (497)
231 COG0578 GlpA Glycerol-3-phosph 98.4 6.3E-07 1.4E-11 87.0 7.5 59 204-264 163-226 (532)
232 PTZ00139 Succinate dehydrogena 98.4 6.8E-06 1.5E-10 83.6 15.3 57 204-260 165-226 (617)
233 PRK05257 malate:quinone oxidor 98.4 2.2E-05 4.8E-10 77.6 18.5 59 204-263 182-246 (494)
234 TIGR02028 ChlP geranylgeranyl 98.4 1.1E-06 2.4E-11 84.9 9.1 34 6-42 1-34 (398)
235 PRK09564 coenzyme A disulfide 98.4 2.6E-06 5.7E-11 83.8 11.8 101 164-266 1-118 (444)
236 TIGR03385 CoA_CoA_reduc CoA-di 98.4 1.7E-06 3.6E-11 84.7 10.1 99 6-129 138-236 (427)
237 PRK06617 2-octaprenyl-6-methox 98.4 8.8E-07 1.9E-11 85.0 7.6 33 6-41 2-34 (374)
238 TIGR01989 COQ6 Ubiquinone bios 98.4 2.2E-06 4.7E-11 84.0 10.5 46 86-131 134-188 (437)
239 PRK07803 sdhA succinate dehydr 98.4 1.4E-06 3E-11 88.9 9.3 35 5-42 8-42 (626)
240 TIGR02732 zeta_caro_desat caro 98.4 1.6E-05 3.6E-10 78.5 16.3 59 204-262 218-283 (474)
241 PF01134 GIDA: Glucose inhibit 98.3 5.1E-06 1.1E-10 78.2 11.7 95 165-261 1-150 (392)
242 COG3380 Predicted NAD/FAD-depe 98.3 1.6E-06 3.4E-11 75.5 7.4 34 6-42 2-35 (331)
243 PRK06912 acoL dihydrolipoamide 98.3 2.5E-06 5.5E-11 84.1 10.1 99 5-129 170-271 (458)
244 TIGR00562 proto_IX_ox protopor 98.3 1.5E-05 3.3E-10 78.9 15.7 36 6-44 3-42 (462)
245 PRK08958 sdhA succinate dehydr 98.3 8.3E-06 1.8E-10 82.6 13.9 58 204-261 142-204 (588)
246 PRK09078 sdhA succinate dehydr 98.3 2.4E-06 5.3E-11 86.7 10.0 35 5-42 12-46 (598)
247 PRK04965 NADH:flavorubredoxin 98.3 2.6E-06 5.7E-11 81.9 9.8 99 5-128 141-241 (377)
248 PRK11883 protoporphyrinogen ox 98.3 2.8E-05 6E-10 76.8 17.2 55 205-261 218-273 (451)
249 KOG2415 Electron transfer flav 98.3 9.1E-06 2E-10 74.9 12.3 60 205-264 183-257 (621)
250 PLN00128 Succinate dehydrogena 98.3 1.5E-05 3.4E-10 81.1 15.4 58 204-261 186-248 (635)
251 PRK07057 sdhA succinate dehydr 98.3 2.8E-06 6.1E-11 86.1 9.8 36 4-42 11-46 (591)
252 PLN02661 Putative thiazole syn 98.3 6.8E-05 1.5E-09 69.6 17.6 168 162-334 91-328 (357)
253 PRK07538 hypothetical protein; 98.3 3.3E-06 7.1E-11 82.3 9.6 33 7-42 2-34 (413)
254 COG2907 Predicted NAD/FAD-bind 98.3 6.8E-05 1.5E-09 67.8 16.7 63 204-268 216-278 (447)
255 COG1252 Ndh NADH dehydrogenase 98.3 4.1E-06 8.9E-11 79.1 9.6 99 163-266 3-114 (405)
256 PF07992 Pyr_redox_2: Pyridine 98.3 2E-06 4.3E-11 74.9 7.1 101 165-266 1-125 (201)
257 TIGR02360 pbenz_hydroxyl 4-hyd 98.3 2.7E-06 5.8E-11 82.1 8.5 35 5-42 2-36 (390)
258 PTZ00318 NADH dehydrogenase-li 98.3 5.6E-06 1.2E-10 80.8 10.7 102 162-266 9-128 (424)
259 COG0644 FixC Dehydrogenases (f 98.3 6.5E-05 1.4E-09 72.6 17.9 97 164-261 4-150 (396)
260 TIGR03169 Nterm_to_SelD pyridi 98.3 4.7E-06 1E-10 79.7 9.9 97 165-266 1-110 (364)
261 COG1232 HemY Protoporphyrinoge 98.3 1.4E-05 3E-10 76.8 12.8 36 7-43 2-37 (444)
262 PRK10262 thioredoxin reductase 98.3 3.7E-05 7.9E-10 72.2 15.7 100 162-265 5-119 (321)
263 TIGR02374 nitri_red_nirB nitri 98.3 3.8E-06 8.3E-11 87.9 9.7 97 166-266 1-111 (785)
264 TIGR01813 flavo_cyto_c flavocy 98.3 4.9E-06 1.1E-10 81.7 10.0 33 7-42 1-34 (439)
265 PRK06416 dihydrolipoamide dehy 98.3 4.1E-06 9E-11 82.8 9.5 98 6-129 173-275 (462)
266 PRK05976 dihydrolipoamide dehy 98.3 4.6E-06 1E-10 82.6 9.8 99 5-129 180-284 (472)
267 PRK06475 salicylate hydroxylas 98.2 4.8E-06 1E-10 80.7 9.6 34 6-42 3-36 (400)
268 PF14759 Reductase_C: Reductas 98.2 1.5E-05 3.2E-10 58.4 9.9 79 346-430 1-81 (85)
269 PLN02464 glycerol-3-phosphate 98.2 5E-06 1.1E-10 84.7 9.8 60 204-263 231-296 (627)
270 TIGR03219 salicylate_mono sali 98.2 1.3E-05 2.7E-10 78.2 12.3 33 7-42 2-35 (414)
271 PRK12770 putative glutamate sy 98.2 3.9E-06 8.4E-11 79.8 8.5 101 162-262 17-129 (352)
272 PRK14694 putative mercuric red 98.2 6E-06 1.3E-10 81.7 10.1 98 5-129 178-276 (468)
273 PRK08294 phenol 2-monooxygenas 98.2 7.6E-06 1.6E-10 83.6 11.0 37 3-42 30-67 (634)
274 PRK07236 hypothetical protein; 98.2 1.1E-05 2.4E-10 77.8 11.7 103 162-266 5-157 (386)
275 PF13450 NAD_binding_8: NAD(P) 98.2 1.8E-06 3.8E-11 60.3 4.4 32 10-44 1-32 (68)
276 PRK08243 4-hydroxybenzoate 3-m 98.2 6.6E-06 1.4E-10 79.6 10.1 35 5-42 2-36 (392)
277 COG1249 Lpd Pyruvate/2-oxoglut 98.2 7.6E-06 1.6E-10 79.2 10.3 100 5-130 173-276 (454)
278 PRK09853 putative selenate red 98.2 9.2E-06 2E-10 85.2 11.5 91 162-264 538-636 (1019)
279 PLN02487 zeta-carotene desatur 98.2 3.7E-05 8.1E-10 76.9 15.3 60 203-262 293-359 (569)
280 PRK14989 nitrite reductase sub 98.2 8.5E-06 1.8E-10 85.5 11.2 100 163-266 3-116 (847)
281 TIGR02032 GG-red-SF geranylger 98.2 2.3E-05 5E-10 72.5 13.0 98 165-264 2-149 (295)
282 PRK12779 putative bifunctional 98.2 5.5E-06 1.2E-10 87.8 9.7 93 162-264 305-406 (944)
283 COG0445 GidA Flavin-dependent 98.2 2E-06 4.4E-11 82.1 5.6 118 3-125 2-157 (621)
284 PRK06116 glutathione reductase 98.2 7.3E-06 1.6E-10 80.7 9.8 99 5-129 167-268 (450)
285 PRK13512 coenzyme A disulfide 98.2 6.5E-06 1.4E-10 80.7 9.3 96 6-129 149-244 (438)
286 PRK11749 dihydropyrimidine deh 98.2 5.7E-06 1.2E-10 81.6 8.6 90 162-262 139-236 (457)
287 PRK07846 mycothione reductase; 98.2 9.2E-06 2E-10 79.8 10.0 98 5-129 166-265 (451)
288 TIGR02053 MerA mercuric reduct 98.2 8.3E-06 1.8E-10 80.7 9.7 99 5-129 166-269 (463)
289 PRK12839 hypothetical protein; 98.2 4.7E-05 1E-09 76.9 15.1 65 204-268 213-282 (572)
290 PRK12845 3-ketosteroid-delta-1 98.2 8.6E-05 1.9E-09 74.8 16.9 64 204-268 216-284 (564)
291 PRK06370 mercuric reductase; V 98.2 1E-05 2.2E-10 80.0 10.0 99 5-129 171-274 (463)
292 PRK05249 soluble pyridine nucl 98.2 9.8E-06 2.1E-10 80.2 9.9 99 5-129 175-275 (461)
293 TIGR01424 gluta_reduc_2 glutat 98.2 1.3E-05 2.9E-10 78.8 10.5 99 5-129 166-266 (446)
294 PRK12843 putative FAD-binding 98.1 1.2E-05 2.6E-10 81.5 10.4 64 204-268 220-288 (578)
295 PLN02463 lycopene beta cyclase 98.1 3.3E-05 7.1E-10 75.3 12.9 98 164-264 29-170 (447)
296 PRK07818 dihydrolipoamide dehy 98.1 1.1E-05 2.3E-10 79.9 9.7 99 5-129 172-276 (466)
297 TIGR03143 AhpF_homolog putativ 98.1 3.6E-05 7.8E-10 77.7 13.6 98 164-266 5-117 (555)
298 TIGR00136 gidA glucose-inhibit 98.1 1.4E-05 2.9E-10 79.4 10.2 33 6-41 1-33 (617)
299 TIGR01421 gluta_reduc_1 glutat 98.1 1.3E-05 2.8E-10 78.8 9.7 99 5-129 166-268 (450)
300 PRK08773 2-octaprenyl-3-methyl 98.1 4.6E-05 1E-09 73.7 13.3 102 163-266 6-172 (392)
301 PRK06834 hypothetical protein; 98.1 5.4E-05 1.2E-09 75.1 13.6 101 164-266 4-159 (488)
302 PRK06327 dihydrolipoamide dehy 98.1 1.4E-05 3E-10 79.3 9.4 99 5-129 183-287 (475)
303 PF00743 FMO-like: Flavin-bind 98.1 5.2E-05 1.1E-09 75.5 13.3 137 164-300 2-194 (531)
304 PRK08163 salicylate hydroxylas 98.1 5.3E-05 1.2E-09 73.4 13.3 102 163-266 4-169 (396)
305 TIGR01316 gltA glutamate synth 98.1 9.1E-06 2E-10 79.8 7.6 92 162-264 132-232 (449)
306 PRK08244 hypothetical protein; 98.1 5.8E-05 1.2E-09 75.4 13.4 103 164-266 3-162 (493)
307 COG0492 TrxB Thioredoxin reduc 98.1 0.00013 2.9E-09 67.1 14.6 99 164-266 4-118 (305)
308 PRK07845 flavoprotein disulfid 98.1 3E-05 6.4E-10 76.7 10.9 98 6-129 178-277 (466)
309 PLN02507 glutathione reductase 98.1 2E-05 4.4E-10 78.3 9.7 99 5-129 203-303 (499)
310 PRK07045 putative monooxygenas 98.0 6.5E-05 1.4E-09 72.6 13.0 104 163-266 5-168 (388)
311 COG0446 HcaD Uncharacterized N 98.0 1.7E-05 3.6E-10 77.3 8.9 97 6-127 137-238 (415)
312 PRK06115 dihydrolipoamide dehy 98.0 2E-05 4.4E-10 77.8 9.5 99 5-129 174-279 (466)
313 PRK12831 putative oxidoreducta 98.0 1.5E-05 3.2E-10 78.6 8.0 93 162-264 139-242 (464)
314 COG1231 Monoamine oxidase [Ami 98.0 9.2E-05 2E-09 69.8 12.6 38 4-44 6-43 (450)
315 PTZ00052 thioredoxin reductase 98.0 3.1E-05 6.7E-10 77.1 10.1 97 6-129 183-281 (499)
316 PRK13748 putative mercuric red 98.0 2.6E-05 5.6E-10 79.2 9.8 98 5-129 270-368 (561)
317 PRK08010 pyridine nucleotide-d 98.0 2.6E-05 5.6E-10 76.7 9.5 99 5-129 158-257 (441)
318 PRK07333 2-octaprenyl-6-methox 98.0 0.00011 2.3E-09 71.5 13.7 99 165-265 3-169 (403)
319 TIGR03452 mycothione_red mycot 98.0 3.3E-05 7.2E-10 76.0 10.2 98 5-129 169-268 (452)
320 PRK13369 glycerol-3-phosphate 98.0 7.6E-06 1.6E-10 81.6 5.7 58 204-263 154-215 (502)
321 PRK05714 2-octaprenyl-3-methyl 98.0 8.6E-05 1.9E-09 72.2 12.9 101 164-266 3-171 (405)
322 PRK14727 putative mercuric red 98.0 2.8E-05 6.2E-10 77.1 9.7 97 6-129 189-286 (479)
323 TIGR02485 CobZ_N-term precorri 98.0 8.4E-05 1.8E-09 72.8 12.8 66 204-269 122-190 (432)
324 TIGR01318 gltD_gamma_fam gluta 98.0 2.1E-05 4.5E-10 77.6 8.5 92 162-264 140-239 (467)
325 TIGR01984 UbiH 2-polyprenyl-6- 98.0 0.0001 2.2E-09 71.1 13.0 98 165-264 1-163 (382)
326 PRK07208 hypothetical protein; 98.0 9.1E-06 2E-10 80.8 5.9 58 205-262 218-279 (479)
327 PRK07588 hypothetical protein; 98.0 0.0001 2.2E-09 71.3 12.8 99 165-266 2-161 (391)
328 PLN02852 ferredoxin-NADP+ redu 98.0 2.7E-05 5.8E-10 76.4 8.6 92 162-264 25-127 (491)
329 TIGR01438 TGR thioredoxin and 98.0 3.6E-05 7.8E-10 76.3 9.7 97 6-129 181-282 (484)
330 KOG4254 Phytoene desaturase [C 98.0 4.5E-06 9.8E-11 77.7 3.0 56 205-261 264-319 (561)
331 TIGR01423 trypano_reduc trypan 98.0 3.3E-05 7.3E-10 76.4 9.3 99 5-129 187-291 (486)
332 PLN02568 polyamine oxidase 98.0 1.1E-05 2.4E-10 80.5 5.8 44 1-44 1-46 (539)
333 PRK06292 dihydrolipoamide dehy 97.9 4.1E-05 8.9E-10 75.7 9.6 98 5-129 169-271 (460)
334 PRK06184 hypothetical protein; 97.9 0.00014 2.9E-09 72.9 13.3 100 164-265 4-170 (502)
335 TIGR01988 Ubi-OHases Ubiquinon 97.9 0.00015 3.3E-09 69.9 13.3 99 165-265 1-165 (385)
336 PF01946 Thi4: Thi4 family; PD 97.9 0.00024 5.3E-09 60.5 12.5 110 156-265 10-167 (230)
337 PRK09126 hypothetical protein; 97.9 0.00016 3.5E-09 69.9 13.3 101 164-266 4-170 (392)
338 PRK05868 hypothetical protein; 97.9 9.7E-05 2.1E-09 70.8 11.6 101 164-266 2-163 (372)
339 KOG1336 Monodehydroascorbate/f 97.9 3.3E-05 7.2E-10 72.9 7.9 101 5-130 213-317 (478)
340 PRK10157 putative oxidoreducta 97.9 0.00018 3.9E-09 70.3 13.5 98 164-263 6-164 (428)
341 PRK12778 putative bifunctional 97.9 2.9E-05 6.3E-10 81.3 8.4 94 162-265 430-532 (752)
342 PRK07608 ubiquinone biosynthes 97.9 0.00019 4.1E-09 69.4 13.4 99 164-265 6-169 (388)
343 PRK12266 glpD glycerol-3-phosp 97.9 1.3E-05 2.9E-10 79.8 5.4 58 204-263 154-216 (508)
344 PTZ00058 glutathione reductase 97.9 6E-05 1.3E-09 75.6 9.8 99 5-129 237-339 (561)
345 TIGR01317 GOGAT_sm_gam glutama 97.9 4.2E-05 9.2E-10 75.8 8.7 90 162-262 142-239 (485)
346 PRK01438 murD UDP-N-acetylmura 97.9 6.6E-05 1.4E-09 74.7 10.0 81 162-268 15-95 (480)
347 TIGR03315 Se_ygfK putative sel 97.9 5.7E-05 1.2E-09 79.7 9.8 90 163-264 537-634 (1012)
348 PF01494 FAD_binding_3: FAD bi 97.9 0.00013 2.9E-09 69.3 11.7 102 165-266 3-175 (356)
349 PLN02697 lycopene epsilon cycl 97.9 0.0002 4.3E-09 71.2 13.1 98 164-263 109-248 (529)
350 KOG2844 Dimethylglycine dehydr 97.9 0.00016 3.4E-09 70.9 11.9 73 186-263 171-243 (856)
351 PRK05192 tRNA uridine 5-carbox 97.9 0.00015 3.3E-09 72.3 12.0 96 164-261 5-155 (618)
352 KOG0029 Amine oxidase [Seconda 97.9 1.8E-05 3.9E-10 77.7 5.4 38 4-44 14-51 (501)
353 PRK06753 hypothetical protein; 97.9 0.00015 3.3E-09 69.6 11.6 100 165-266 2-155 (373)
354 PRK07364 2-octaprenyl-6-methox 97.8 0.00024 5.1E-09 69.3 13.0 102 163-266 18-184 (415)
355 COG2072 TrkA Predicted flavopr 97.8 0.00054 1.2E-08 67.0 15.2 137 163-300 8-186 (443)
356 COG3573 Predicted oxidoreducta 97.8 9.4E-05 2E-09 66.5 8.9 36 4-42 4-39 (552)
357 PRK07190 hypothetical protein; 97.8 0.00027 5.9E-09 70.1 13.3 100 164-265 6-167 (487)
358 TIGR01790 carotene-cycl lycope 97.8 0.00028 6E-09 68.2 13.0 97 165-263 1-141 (388)
359 PRK06467 dihydrolipoamide dehy 97.8 8.9E-05 1.9E-09 73.4 9.7 97 6-129 175-277 (471)
360 PRK08849 2-octaprenyl-3-methyl 97.8 0.00023 5E-09 68.6 12.4 101 164-266 4-170 (384)
361 PRK08132 FAD-dependent oxidore 97.8 0.00047 1E-08 69.8 14.7 104 163-266 23-188 (547)
362 PRK12775 putative trifunctiona 97.8 5.8E-05 1.2E-09 80.9 8.4 92 163-264 430-531 (1006)
363 PRK08013 oxidoreductase; Provi 97.8 0.00034 7.4E-09 67.8 13.1 101 164-266 4-171 (400)
364 PRK12810 gltD glutamate syntha 97.8 6.2E-05 1.3E-09 74.5 7.9 91 162-263 142-240 (471)
365 PRK06617 2-octaprenyl-6-methox 97.8 0.00036 7.9E-09 67.0 12.8 99 165-266 3-163 (374)
366 KOG2665 Predicted FAD-dependen 97.8 5.8E-05 1.2E-09 67.3 6.5 58 207-264 198-258 (453)
367 PRK08020 ubiF 2-octaprenyl-3-m 97.8 0.00045 9.7E-09 66.8 13.4 101 163-265 5-171 (391)
368 PRK06475 salicylate hydroxylas 97.8 0.0005 1.1E-08 66.7 13.4 101 164-266 3-170 (400)
369 PRK08850 2-octaprenyl-6-methox 97.7 0.00042 9.1E-09 67.4 12.7 102 163-266 4-171 (405)
370 PRK12809 putative oxidoreducta 97.7 8.5E-05 1.8E-09 76.3 8.1 92 162-264 309-408 (639)
371 PRK06183 mhpA 3-(3-hydroxyphen 97.7 0.0004 8.7E-09 70.1 12.8 101 163-265 10-176 (538)
372 PRK10015 oxidoreductase; Provi 97.7 0.00054 1.2E-08 66.9 13.3 99 164-264 6-165 (429)
373 TIGR00136 gidA glucose-inhibit 97.7 0.00054 1.2E-08 68.3 12.9 97 165-262 2-153 (617)
374 PRK12814 putative NADPH-depend 97.7 0.00012 2.6E-09 75.3 8.3 92 162-264 192-291 (652)
375 PF06039 Mqo: Malate:quinone o 97.7 4E-05 8.8E-10 72.5 4.3 85 205-290 181-274 (488)
376 PTZ00188 adrenodoxin reductase 97.7 0.00022 4.8E-09 69.1 9.1 92 162-264 38-139 (506)
377 TIGR01372 soxA sarcosine oxida 97.7 0.00057 1.2E-08 73.7 13.2 101 163-265 163-288 (985)
378 PF12831 FAD_oxidored: FAD dep 97.7 4.9E-05 1.1E-09 74.2 4.7 95 166-261 2-148 (428)
379 PLN02985 squalene monooxygenas 97.6 6.3E-05 1.4E-09 74.9 5.4 36 4-42 42-77 (514)
380 PRK12834 putative FAD-binding 97.6 5.9E-05 1.3E-09 76.1 5.3 37 2-41 1-37 (549)
381 KOG1399 Flavin-containing mono 97.6 0.0012 2.6E-08 63.9 13.9 138 162-300 5-197 (448)
382 PRK06185 hypothetical protein; 97.6 0.00089 1.9E-08 65.1 13.3 102 163-265 6-171 (407)
383 PRK05335 tRNA (uracil-5-)-meth 97.6 6.8E-05 1.5E-09 71.4 5.3 34 6-42 3-36 (436)
384 TIGR00031 UDP-GALP_mutase UDP- 97.6 7E-05 1.5E-09 71.0 5.3 35 6-43 2-36 (377)
385 PRK07494 2-octaprenyl-6-methox 97.6 0.00097 2.1E-08 64.4 13.2 100 163-265 7-169 (388)
386 PTZ00153 lipoamide dehydrogena 97.6 0.00024 5.2E-09 72.4 9.1 98 6-129 313-430 (659)
387 PLN02546 glutathione reductase 97.6 0.00035 7.6E-09 70.2 10.0 99 5-129 252-353 (558)
388 TIGR03219 salicylate_mono sali 97.6 0.0005 1.1E-08 67.1 10.9 99 165-265 2-161 (414)
389 PRK12769 putative oxidoreducta 97.6 0.00019 4.2E-09 74.0 8.4 91 162-263 326-424 (654)
390 PRK05732 2-octaprenyl-6-methox 97.6 0.0011 2.3E-08 64.3 13.2 100 164-265 4-171 (395)
391 PLN02576 protoporphyrinogen ox 97.6 8.9E-05 1.9E-09 74.1 5.7 38 4-44 11-49 (496)
392 KOG2404 Fumarate reductase, fl 97.6 0.00024 5.3E-09 63.6 7.6 72 186-260 122-203 (477)
393 PRK09897 hypothetical protein; 97.6 0.0013 2.9E-08 65.4 13.7 98 164-263 2-166 (534)
394 PRK02106 choline dehydrogenase 97.6 8.1E-05 1.8E-09 75.4 5.3 39 1-42 1-40 (560)
395 PRK11445 putative oxidoreducta 97.6 0.0014 3E-08 62.4 13.3 97 165-265 3-159 (351)
396 PRK01438 murD UDP-N-acetylmura 97.6 0.00039 8.5E-09 69.2 9.9 134 5-191 16-153 (480)
397 KOG0404 Thioredoxin reductase 97.6 0.00068 1.5E-08 57.6 9.5 97 163-263 8-124 (322)
398 TIGR01789 lycopene_cycl lycope 97.6 0.00048 1.1E-08 65.8 10.0 94 165-264 1-139 (370)
399 PTZ00367 squalene epoxidase; P 97.6 8.3E-05 1.8E-09 74.6 4.9 35 4-41 32-66 (567)
400 PLN02268 probable polyamine ox 97.6 9.9E-05 2.1E-09 72.5 5.3 36 6-44 1-36 (435)
401 TIGR01813 flavo_cyto_c flavocy 97.5 0.0015 3.3E-08 64.2 13.4 62 207-268 132-198 (439)
402 KOG0399 Glutamate synthase [Am 97.5 0.00024 5.1E-09 73.3 7.4 92 162-264 1784-1883(2142)
403 TIGR01989 COQ6 Ubiquinone bios 97.5 0.0014 3.1E-08 64.3 13.0 102 165-266 2-186 (437)
404 KOG2311 NAD/FAD-utilizing prot 97.5 0.00019 4E-09 67.6 6.2 35 4-41 27-61 (679)
405 PLN02927 antheraxanthin epoxid 97.5 0.00011 2.5E-09 74.3 5.2 35 4-41 80-114 (668)
406 PRK06996 hypothetical protein; 97.5 0.0013 2.8E-08 63.8 12.3 98 163-262 11-173 (398)
407 PRK08243 4-hydroxybenzoate 3-m 97.5 0.0019 4.1E-08 62.5 13.1 101 164-266 3-166 (392)
408 PRK12837 3-ketosteroid-delta-1 97.5 0.00015 3.2E-09 72.6 5.2 35 4-42 6-40 (513)
409 PF05834 Lycopene_cycl: Lycope 97.4 0.0021 4.5E-08 61.7 12.6 96 166-264 2-143 (374)
410 PRK13984 putative oxidoreducta 97.4 0.00039 8.5E-09 71.2 8.0 91 162-263 282-380 (604)
411 PF00732 GMC_oxred_N: GMC oxid 97.4 0.00011 2.5E-09 68.0 3.8 62 207-268 195-263 (296)
412 PF06100 Strep_67kDa_ant: Stre 97.4 0.0016 3.4E-08 62.7 11.3 58 205-262 207-273 (500)
413 TIGR02023 BchP-ChlP geranylger 97.4 0.0025 5.5E-08 61.5 13.0 98 165-265 2-157 (388)
414 COG2509 Uncharacterized FAD-de 97.4 0.0035 7.5E-08 59.3 13.0 47 78-124 179-228 (486)
415 PRK12416 protoporphyrinogen ox 97.4 0.00018 4E-09 71.2 5.2 51 206-260 227-277 (463)
416 KOG0685 Flavin-containing amin 97.4 0.00023 4.9E-09 67.4 5.3 39 4-44 20-58 (498)
417 PRK07538 hypothetical protein; 97.4 0.0023 4.9E-08 62.4 12.7 102 165-266 2-168 (413)
418 COG3349 Uncharacterized conser 97.4 0.0002 4.4E-09 68.8 5.0 35 7-44 2-36 (485)
419 PRK12835 3-ketosteroid-delta-1 97.4 0.00021 4.5E-09 72.5 5.4 36 4-42 10-45 (584)
420 PF13454 NAD_binding_9: FAD-NA 97.4 0.0032 7E-08 52.1 11.5 42 218-261 113-155 (156)
421 PRK12771 putative glutamate sy 97.4 0.00064 1.4E-08 69.0 8.4 91 162-264 136-235 (564)
422 PRK06126 hypothetical protein; 97.3 0.0034 7.5E-08 63.5 13.4 103 163-265 7-190 (545)
423 TIGR00137 gid_trmFO tRNA:m(5)U 97.3 0.00067 1.5E-08 65.1 7.7 34 165-198 2-35 (433)
424 PLN02676 polyamine oxidase 97.3 0.00032 7E-09 69.5 5.7 39 4-44 25-63 (487)
425 TIGR02360 pbenz_hydroxyl 4-hyd 97.3 0.0033 7.2E-08 60.7 12.3 102 164-266 3-166 (390)
426 TIGR02028 ChlP geranylgeranyl 97.3 0.0051 1.1E-07 59.5 13.5 100 165-265 2-162 (398)
427 KOG2495 NADH-dehydrogenase (ub 97.3 0.0014 3E-08 61.3 8.8 102 162-266 54-173 (491)
428 PRK12844 3-ketosteroid-delta-1 97.3 0.00037 8E-09 70.4 5.3 36 4-42 5-40 (557)
429 PRK06567 putative bifunctional 97.3 0.0007 1.5E-08 70.7 7.3 34 162-195 382-415 (1028)
430 KOG1335 Dihydrolipoamide dehyd 97.2 0.00062 1.3E-08 62.5 5.6 99 5-129 211-317 (506)
431 TIGR00137 gid_trmFO tRNA:m(5)U 97.2 0.00046 9.9E-09 66.3 5.0 34 6-42 1-34 (433)
432 PLN02927 antheraxanthin epoxid 97.2 0.0076 1.6E-07 61.4 13.8 35 162-196 80-114 (668)
433 COG0562 Glf UDP-galactopyranos 97.2 0.0006 1.3E-08 61.2 5.2 37 6-45 2-38 (374)
434 KOG2614 Kynurenine 3-monooxyge 97.1 0.00057 1.2E-08 63.7 4.7 35 5-42 2-36 (420)
435 COG1148 HdrA Heterodisulfide r 97.1 0.0012 2.6E-08 62.6 6.8 73 162-234 123-207 (622)
436 COG0445 GidA Flavin-dependent 97.1 0.0016 3.4E-08 62.9 7.7 97 164-261 5-156 (621)
437 PLN02529 lysine-specific histo 97.1 0.00068 1.5E-08 69.7 5.6 37 5-44 160-196 (738)
438 KOG1276 Protoporphyrinogen oxi 97.1 0.00091 2E-08 62.4 5.8 58 5-63 11-70 (491)
439 KOG1298 Squalene monooxygenase 97.1 0.00066 1.4E-08 62.4 4.4 36 4-42 44-79 (509)
440 PRK08255 salicylyl-CoA 5-hydro 97.1 0.00061 1.3E-08 71.5 4.9 33 7-42 2-36 (765)
441 COG2081 Predicted flavoprotein 97.1 0.014 3E-07 54.6 12.9 117 5-124 3-165 (408)
442 PLN02985 squalene monooxygenas 97.1 0.0095 2.1E-07 59.5 13.0 102 163-266 43-211 (514)
443 PLN02328 lysine-specific histo 97.0 0.00089 1.9E-08 69.3 5.5 37 5-44 238-274 (808)
444 PTZ00306 NADH-dependent fumara 97.0 0.00078 1.7E-08 73.8 5.3 36 4-42 408-443 (1167)
445 PRK08401 L-aspartate oxidase; 97.0 0.0086 1.9E-07 59.2 12.3 96 164-262 2-174 (466)
446 COG0493 GltD NADPH-dependent g 97.0 0.0021 4.6E-08 62.5 7.6 88 162-261 122-218 (457)
447 TIGR02462 pyranose_ox pyranose 97.0 0.00082 1.8E-08 66.8 4.8 56 213-268 222-284 (544)
448 PLN00093 geranylgeranyl diphos 97.0 0.014 3E-07 57.3 13.4 102 163-265 39-201 (450)
449 COG1251 NirB NAD(P)H-nitrite r 97.0 0.005 1.1E-07 61.7 9.9 102 163-268 3-118 (793)
450 COG3380 Predicted NAD/FAD-depe 96.9 0.0076 1.6E-07 53.1 9.4 102 165-268 3-165 (331)
451 COG3634 AhpF Alkyl hydroperoxi 96.9 0.0081 1.7E-07 54.7 9.4 101 162-262 210-324 (520)
452 KOG2852 Possible oxidoreductas 96.8 0.002 4.4E-08 57.0 5.2 39 4-42 9-50 (380)
453 PRK07804 L-aspartate oxidase; 96.8 0.018 4E-07 58.0 13.0 98 164-261 17-208 (541)
454 PRK08275 putative oxidoreducta 96.8 0.022 4.8E-07 57.7 13.6 55 208-262 140-199 (554)
455 TIGR01812 sdhA_frdA_Gneg succi 96.8 0.024 5.2E-07 57.7 13.4 50 211-261 135-189 (566)
456 COG2303 BetA Choline dehydroge 96.7 0.0015 3.3E-08 65.6 4.2 58 210-268 208-271 (542)
457 PRK08294 phenol 2-monooxygenas 96.7 0.023 5E-07 58.4 12.8 103 163-265 32-212 (634)
458 PRK12266 glpD glycerol-3-phosp 96.7 0.03 6.5E-07 56.0 13.3 33 164-196 7-39 (508)
459 PRK06854 adenylylsulfate reduc 96.6 0.034 7.4E-07 56.9 13.4 96 164-260 12-192 (608)
460 PRK06175 L-aspartate oxidase; 96.5 0.036 7.8E-07 54.3 12.1 53 208-261 131-187 (433)
461 PLN03000 amine oxidase 96.5 0.0039 8.5E-08 64.8 5.5 37 5-44 184-220 (881)
462 PRK13369 glycerol-3-phosphate 96.5 0.037 8.1E-07 55.3 12.4 33 164-196 7-39 (502)
463 TIGR01811 sdhA_Bsu succinate d 96.5 0.041 8.9E-07 56.2 12.8 43 219-261 147-194 (603)
464 PRK09078 sdhA succinate dehydr 96.5 0.044 9.5E-07 56.0 13.0 52 210-261 154-210 (598)
465 PRK06452 sdhA succinate dehydr 96.5 0.041 8.9E-07 55.8 12.6 50 210-260 141-195 (566)
466 TIGR00551 nadB L-aspartate oxi 96.5 0.039 8.4E-07 55.0 12.3 56 207-263 130-189 (488)
467 PF14721 AIF_C: Apoptosis-indu 96.5 0.024 5.2E-07 43.5 8.1 33 325-362 1-34 (133)
468 PLN02785 Protein HOTHEAD 96.4 0.0037 7.9E-08 63.3 4.9 34 5-42 55-88 (587)
469 PRK14106 murD UDP-N-acetylmura 96.4 0.016 3.4E-07 57.3 9.2 82 162-268 4-85 (450)
470 PRK14106 murD UDP-N-acetylmura 96.4 0.015 3.2E-07 57.4 8.8 35 4-41 4-38 (450)
471 PF13450 NAD_binding_8: NAD(P) 96.4 0.0066 1.4E-07 42.2 4.5 33 168-200 1-33 (68)
472 COG4529 Uncharacterized protei 96.4 0.036 7.9E-07 53.2 10.7 101 164-265 2-166 (474)
473 TIGR01810 betA choline dehydro 96.4 0.0031 6.8E-08 63.6 3.9 58 210-268 199-260 (532)
474 PRK07573 sdhA succinate dehydr 96.3 0.056 1.2E-06 55.6 12.9 47 214-261 179-230 (640)
475 PRK12835 3-ketosteroid-delta-1 96.3 0.088 1.9E-06 53.6 14.0 56 214-269 222-282 (584)
476 PLN02976 amine oxidase 96.3 0.0055 1.2E-07 66.4 5.5 36 5-43 693-728 (1713)
477 KOG2614 Kynurenine 3-monooxyge 96.3 0.029 6.2E-07 52.7 9.2 35 163-197 2-36 (420)
478 KOG2311 NAD/FAD-utilizing prot 96.3 0.019 4.2E-07 54.6 8.0 32 164-195 29-60 (679)
479 PRK06263 sdhA succinate dehydr 96.2 0.073 1.6E-06 53.8 12.6 52 210-261 139-195 (543)
480 PRK05945 sdhA succinate dehydr 96.2 0.082 1.8E-06 53.9 12.9 52 210-262 140-196 (575)
481 KOG2853 Possible oxidoreductas 96.2 0.0056 1.2E-07 55.6 3.9 40 5-44 86-126 (509)
482 PTZ00367 squalene epoxidase; P 96.1 0.06 1.3E-06 54.4 11.5 33 164-196 34-66 (567)
483 PRK07057 sdhA succinate dehydr 96.1 0.11 2.4E-06 53.0 13.5 32 164-195 13-44 (591)
484 PRK02705 murD UDP-N-acetylmura 96.1 0.031 6.7E-07 55.3 9.1 136 7-191 2-140 (459)
485 PRK08255 salicylyl-CoA 5-hydro 96.1 0.023 4.9E-07 59.9 8.5 33 165-197 2-36 (765)
486 KOG2960 Protein involved in th 96.0 0.0017 3.6E-08 54.7 -0.1 36 6-42 77-112 (328)
487 PRK06069 sdhA succinate dehydr 95.9 0.11 2.5E-06 52.9 12.6 31 165-195 7-40 (577)
488 PRK07803 sdhA succinate dehydr 95.9 0.12 2.6E-06 53.2 12.8 32 164-195 9-40 (626)
489 PRK08205 sdhA succinate dehydr 95.9 0.16 3.5E-06 51.8 13.5 54 209-262 144-205 (583)
490 PRK08641 sdhA succinate dehydr 95.8 0.15 3.3E-06 52.1 12.7 33 163-195 3-35 (589)
491 TIGR03862 flavo_PP4765 unchara 95.7 0.11 2.3E-06 49.5 10.5 83 176-263 57-141 (376)
492 KOG1346 Programmed cell death 95.7 0.018 3.8E-07 53.8 5.0 101 5-128 347-451 (659)
493 KOG1238 Glucose dehydrogenase/ 95.6 0.013 2.9E-07 58.0 4.4 39 4-44 56-94 (623)
494 KOG2755 Oxidoreductase [Genera 95.6 0.013 2.9E-07 51.2 3.8 92 165-265 1-106 (334)
495 PRK12834 putative FAD-binding 95.6 0.25 5.4E-06 50.1 13.6 33 164-196 5-37 (549)
496 PRK07395 L-aspartate oxidase; 95.6 0.093 2E-06 53.0 10.4 44 218-261 148-195 (553)
497 COG0654 UbiH 2-polyprenyl-6-me 95.6 0.022 4.7E-07 55.0 5.7 58 163-220 2-60 (387)
498 PRK08071 L-aspartate oxidase; 95.6 0.11 2.3E-06 52.1 10.7 44 218-262 142-189 (510)
499 PTZ00306 NADH-dependent fumara 95.5 0.16 3.6E-06 56.0 12.8 34 163-196 409-442 (1167)
500 TIGR02352 thiamin_ThiO glycine 95.5 0.056 1.2E-06 50.9 8.2 57 204-262 136-192 (337)
No 1
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=1.5e-54 Score=416.98 Aligned_cols=392 Identities=27% Similarity=0.402 Sum_probs=326.7
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHH
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
...+|||||||+||++||..|++++. +.+|+|+++++..+|.++.+++.++........ .....+++.
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~-~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~-----------~~~~~~~~~ 69 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGF-TGELHLFSDERHLPYERPPLSKSMLLEDSPQLQ-----------QVLPANWWQ 69 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCC-CCCEEEeCCCCCCCCCCCCCCHHHHCCCCcccc-----------ccCCHHHHH
Confidence 35689999999999999999999875 567999999999999998887766543221111 123457788
Q ss_pred HCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCC
Q 013890 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN 163 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~ 163 (434)
+.+++++.++.|..++++.+.+.+.++.++.||+||||||++|+.++. ++....++++++++.++.++.+.+. .+
T Consensus 70 ~~~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p~---~~~~~~~v~~~~~~~da~~l~~~~~--~~ 144 (396)
T PRK09754 70 ENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLPL---LDALGERCFTLRHAGDAARLREVLQ--PE 144 (396)
T ss_pred HCCCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCCCCCC---CCcCCCCEEecCCHHHHHHHHHHhh--cC
Confidence 899999999899999999999998888899999999999999987763 4444577999999999999887765 47
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEE
Q 013890 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVK 243 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~ 243 (434)
++++|||+|++|+|+|..|.+.|.+|+++++.+.+++..+++...+.+.+.+++.||++++++.++++.. ++. ..+.
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~-~~v~ 221 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD--GEK-VELT 221 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc--CCE-EEEE
Confidence 8999999999999999999999999999999999887767889999999999999999999999999975 232 4577
Q ss_pred eCCCcEEEcCEEEEccCCccChhhhhc-cccccCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHH
Q 013890 244 LKDGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSA 322 (434)
Q Consensus 244 ~~~g~~i~~d~vv~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g 322 (434)
+.+|+++++|.||+++|.+|++.++.. ++.. +++|.||+++||++|+|||+|||+..+.. .+...+.++|..|..||
T Consensus 222 l~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~-~~gi~vd~~~~ts~~~IyA~GD~a~~~~~-~g~~~~~~~~~~A~~qg 299 (396)
T PRK09754 222 LQSGETLQADVVIYGIGISANDQLAREANLDT-ANGIVIDEACRTCDPAIFAGGDVAITRLD-NGALHRCESWENANNQA 299 (396)
T ss_pred ECCCCEEECCEEEECCCCChhhHHHHhcCCCc-CCCEEECCCCccCCCCEEEccceEeeeCC-CCCEEEECcHHHHHHHH
Confidence 889999999999999999999987643 4444 46799999999999999999999987665 56666778999999999
Q ss_pred HHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCcE-EEEcCCCccccCCcEEEEEEeCCEEEEEEEecCCh
Q 013890 323 EQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT-VLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTP 401 (434)
Q Consensus 323 ~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~~~ 401 (434)
++||+||++.. ..|..+|++|+.+|++.+..+|....+. +..++.. ...|..+++++|+|+|+.++| .+
T Consensus 300 ~~aa~ni~g~~-----~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~g~~~~~-~~ 369 (396)
T PRK09754 300 QIAAAAMLGLP-----LPLLPPPWFWSDQYSDNLQFIGDMRGDDWLCRGNPE----TQKAIWFNLQNGVLIGAVTLN-QG 369 (396)
T ss_pred HHHHHHhcCCC-----CCCCCCCceEEEeCCccEEEeeCCCCCEEEEecCCC----CceEEEEEeeCCEEEEEEEEC-CH
Confidence 99999999753 5678899999999999999999765443 2334322 345666777899999999998 47
Q ss_pred HHHHHHHHHHHcCCCCCChhhhhccCC
Q 013890 402 EENKAIAKVARVQPSVESLDVLKNEGL 428 (434)
Q Consensus 402 ~~~~~~~~~i~~~~~~~~~~~~~~~~~ 428 (434)
.+...+..+|+.+.++ +.+.|.++.+
T Consensus 370 ~~~~~~~~~~~~~~~~-~~~~~~~~~~ 395 (396)
T PRK09754 370 REIRPIRKWIQSGKTF-DAKLLIDENI 395 (396)
T ss_pred HHHHHHHHHHHCCCCC-CHHHhcCccc
Confidence 7888889999999887 7778877753
No 2
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=2.2e-55 Score=418.12 Aligned_cols=398 Identities=23% Similarity=0.289 Sum_probs=308.8
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC-C---CCCCCCCccccccCCCCC----CCCC-CcceecCCC
Q 013890 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA-V---APYERPALSKAYLFPEGT----ARLP-GFHVCVGSG 73 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~-~---~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~ 73 (434)
+++||+||||+||||..||..+++.|.+ |.++|+.. . +....|.++|.++..... .... .+.......
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~k---valvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~ 78 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLK---VALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVP 78 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCC---EEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCC
Confidence 4579999999999999999999999987 99999995 3 122336667776654422 1111 111111110
Q ss_pred -----------------CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCC--CcEEEeceEEEccCCCcccccCCCC
Q 013890 74 -----------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT--GLIFKYQILVIATGSTVLRLTDFGV 134 (434)
Q Consensus 74 -----------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~--~~~~~~d~lilAtG~~~~~p~~~~i 134 (434)
.......+++..+++++.+...+ + +.++|.+.+ .++++++++|||||++|..|+.+
T Consensus 79 ~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f-~--~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~-- 153 (454)
T COG1249 79 KIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARF-V--DPHTVEVTGEDKETITADNIIIATGSRPRIPPGP-- 153 (454)
T ss_pred CcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEE-C--CCCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCC--
Confidence 01123334455799999984433 2 367777665 47899999999999999999954
Q ss_pred CCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHH
Q 013890 135 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY 214 (434)
Q Consensus 135 ~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (434)
+.+...+++..+...... .|++++|||+|++|+|+|..++++|.+||++++.+++++. +|+++++.+.+.
T Consensus 154 -~~~~~~~~~s~~~l~~~~--------lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~-~D~ei~~~~~~~ 223 (454)
T COG1249 154 -GIDGARILDSSDALFLLE--------LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG-EDPEISKELTKQ 223 (454)
T ss_pred -CCCCCeEEechhhccccc--------CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc-CCHHHHHHHHHH
Confidence 444344665444222222 4899999999999999999999999999999999999997 899999999999
Q ss_pred HHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc--EEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCCCCCCC
Q 013890 215 YANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGR--TLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTS 288 (434)
Q Consensus 215 l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~--~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~ 288 (434)
|++.|+++++++.+++++..+++ ..+.+++|+ ++++|.+++|+|++||++-+ +.++.. .+|+|.||+.++||
T Consensus 224 l~~~gv~i~~~~~v~~~~~~~~~--v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tn 301 (454)
T COG1249 224 LEKGGVKILLNTKVTAVEKKDDG--VLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTN 301 (454)
T ss_pred HHhCCeEEEccceEEEEEecCCe--EEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccccC
Confidence 99999999999999999874444 567777775 78999999999999999833 557887 55899999888889
Q ss_pred CCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCcE--
Q 013890 289 ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT-- 366 (434)
Q Consensus 289 ~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~-- 366 (434)
+|||||+|||++.+. +...|..||++|++||++.. ....+|..+|+++++.|+++++ |+++.+.
T Consensus 302 vp~IyA~GDV~~~~~----------Lah~A~~eg~iaa~~i~g~~--~~~~d~~~iP~~ift~Peia~V--Glte~ea~~ 367 (454)
T COG1249 302 VPGIYAIGDVIGGPM----------LAHVAMAEGRIAAENIAGGK--RTPIDYRLIPSVVFTDPEIASV--GLTEEEAKE 367 (454)
T ss_pred CCCEEEeeccCCCcc----------cHhHHHHHHHHHHHHHhCCC--CCcCcccCCCEEEECCCcceee--eCCHHHHHh
Confidence 999999999998764 46678899999999999822 2346789999999999999988 7765221
Q ss_pred ----EEEcCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCcc
Q 013890 367 ----VLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFA 431 (434)
Q Consensus 367 ----~~~~~~~~~--------~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~ 431 (434)
+..+..+.. .++.+|+|+++ ++++|||+|++|++++|+ +.++.||++++|.+|+.....+.++++
T Consensus 368 ~g~~~~~~~~~f~~~~ra~~~~~~~G~~Klv~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~i~~HPT~s 447 (454)
T COG1249 368 AGIDYKVGKFPFAANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPTLS 447 (454)
T ss_pred cCCceEEEEeecccchhHHhccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCCCCCCChH
Confidence 222211111 35678999888 579999999999999998 999999999999999999999999988
Q ss_pred ccC
Q 013890 432 SKI 434 (434)
Q Consensus 432 ~~~ 434 (434)
|.+
T Consensus 448 E~~ 450 (454)
T COG1249 448 EAL 450 (454)
T ss_pred HHH
Confidence 753
No 3
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=3.3e-52 Score=405.12 Aligned_cols=400 Identities=18% Similarity=0.221 Sum_probs=303.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHCC
Q 013890 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 86 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (434)
+|||||||+||++||..|++++ ++.+|+|||+++.+.|.++.+.... .. ..+.... .......++.++.+
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~-~~~~I~li~~~~~~~~~~~~lp~~~-~~----~~~~~~~----~~~~~~~~~~~~~~ 72 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLD-KESDIIIFEKDRDMSFANCALPYYI-GE----VVEDRKY----ALAYTPEKFYDRKQ 72 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhC-CCCCEEEEECCCCcccccCCcchhh-cC----ccCCHHH----cccCCHHHHHHhCC
Confidence 7999999999999999999874 3567999999988777764332211 00 0000000 00011234556789
Q ss_pred cEEEcCCeEEEEeCCCCEEEcCCC---c--EEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhc
Q 013890 87 IELILSTEIVRADIASKTLLSATG---L--IFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAK 161 (434)
Q Consensus 87 v~~~~~~~v~~i~~~~~~v~~~~~---~--~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~ 161 (434)
++++.+++|+.||++++.|.+.++ . ++.||+||||||++|..|+ ++ ..++++.++..++..+.+.+...
T Consensus 73 i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~---~~---~~~~~~~~~~~~~~~l~~~l~~~ 146 (438)
T PRK13512 73 ITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLG---FE---SDITFTLRNLEDTDAIDQFIKAN 146 (438)
T ss_pred CEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCC---CC---CCCeEEecCHHHHHHHHHHHhhc
Confidence 999988899999999998877543 2 4689999999999998765 33 36788888999998888877665
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEE
Q 013890 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNE 241 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~ 241 (434)
.+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+.+++.||++++++.+++++. ..
T Consensus 147 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~-~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~------~~ 219 (438)
T PRK13512 147 QVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELDKREIPYRLNEEIDAING------NE 219 (438)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh-cCHHHHHHHHHHHHhcCCEEEECCeEEEEeC------CE
Confidence 6899999999999999999999999999999999888775 7999999999999999999999999999964 14
Q ss_pred EEeCCCcEEEcCEEEEccCCccChhhhhc-cccc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHH
Q 013890 242 VKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHAR 319 (434)
Q Consensus 242 v~~~~g~~i~~d~vv~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~ 319 (434)
+.+++|+++++|.|++|+|++|++++++. ++.. ++|+|.||+++||++|+|||+|||+..+....+.+...+....|.
T Consensus 220 v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~ 299 (438)
T PRK13512 220 VTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAH 299 (438)
T ss_pred EEECCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCcccCCCCEEEeeeeEEeeeccCCCceecccchHHH
Confidence 66778889999999999999999987754 4655 568899999999999999999999975433333333345666788
Q ss_pred HHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCcEE-------EEcC--CCc--cccCCcEEEEEE--
Q 013890 320 KSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTV-------LFGD--NDL--ASATHKFGTYWI-- 386 (434)
Q Consensus 320 ~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~-------~~~~--~~~--~~~~~~~~~~~~-- 386 (434)
+||+++++||++... .....+..+|...+. +..+..+|+++.+.. .+.. ... ...+.+|+|+++
T Consensus 300 ~~a~~~a~ni~g~~~-~~~~~~~~~~~~~~~--~~~ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~ 376 (438)
T PRK13512 300 RAASIVAEQIAGNDT-IEFKGFLGNNIVKFF--DYTFASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRVYYDT 376 (438)
T ss_pred HHHHHHHHHhcCCCc-cccCCcccceEEEEc--CceEEeecCCHHHHccCCcEEEEEecCCcCCCcCCCceEEEEEEEEC
Confidence 999999999986421 111123345554444 444555587763221 1100 110 134577899887
Q ss_pred eCCEEEEEEEecCC-hHHH-HHHHHHHHcCCCCCChhhh-hccCCCccc
Q 013890 387 KDGKVVGVFLESGT-PEEN-KAIAKVARVQPSVESLDVL-KNEGLSFAS 432 (434)
Q Consensus 387 ~~~~ilG~~~~g~~-~~~~-~~~~~~i~~~~~~~~~~~~-~~~~~~~~~ 432 (434)
++++|||+|++|++ ++|+ +.++.+|++++|++||..+ ..+.++|..
T Consensus 377 ~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~ 425 (438)
T PRK13512 377 SNRKILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAYAPPYSH 425 (438)
T ss_pred CCCeEEEEEEEccccHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCCc
Confidence 57999999999986 6775 9999999999999999886 777887764
No 4
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=100.00 E-value=1.2e-52 Score=384.48 Aligned_cols=401 Identities=53% Similarity=0.887 Sum_probs=360.1
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
...++|||+|++|..|+.++++.+. ..+++++-++..+||.++.+++.+. ..+........+|+++
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~-~~ri~l~~~~~~~pydr~~Ls~~~~-------------~~~~~~a~r~~e~Yke 139 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGF-TERIALVKREYLLPYDRARLSKFLL-------------TVGEGLAKRTPEFYKE 139 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCC-CcceEEEeccccCcccchhccccee-------------eccccccccChhhHhh
Confidence 3679999999999999999999986 5678999989889998877665443 2333445677889999
Q ss_pred CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCC
Q 013890 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNG 164 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~ 164 (434)
.++++++++.|+.+|...+++.+.+|+.+.|++|+||||+.++.|+ ++|.+.++++++++.+++..+...+. ...
T Consensus 140 ~gIe~~~~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~---~pG~~~~nv~~ireieda~~l~~~~~--~~~ 214 (478)
T KOG1336|consen 140 KGIELILGTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAKTLD---IPGVELKNVFYLREIEDANRLVAAIQ--LGG 214 (478)
T ss_pred cCceEEEcceeEEeeccccEEEeCCCceeecceEEEeecCccccCC---CCCccccceeeeccHHHHHHHHHHhc--cCc
Confidence 9999999999999999999999999999999999999999999998 46777899999999999999888876 377
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe
Q 013890 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL 244 (434)
Q Consensus 165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~ 244 (434)
+++++|+|++|+|++..|...+.+||++.+.+.++++.+.+.+.+.+.++++++||++++++.+.+++.+++|++..|.+
T Consensus 215 ~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l 294 (478)
T KOG1336|consen 215 KVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKL 294 (478)
T ss_pred eEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEe
Confidence 89999999999999999999999999999999999998999999999999999999999999999999988899999999
Q ss_pred CCCcEEEcCEEEEccCCccChhhhhccccc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHH
Q 013890 245 KDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAE 323 (434)
Q Consensus 245 ~~g~~i~~d~vv~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~ 323 (434)
.||+++++|+|++.+|.+|++.++..+... .+|+|.||+.+||++|||||+||++.++...++..+++.|+.+|+.+|+
T Consensus 295 ~dg~~l~adlvv~GiG~~p~t~~~~~g~~~~~~G~i~V~~~f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~ 374 (478)
T KOG1336|consen 295 KDGKTLEADLVVVGIGIKPNTSFLEKGILLDSKGGIKVDEFFQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGR 374 (478)
T ss_pred ccCCEeccCeEEEeeccccccccccccceecccCCEeehhceeeccCCcccccceeecccccccccccchHHHHHHHHHH
Confidence 999999999999999999999999765444 7899999999999999999999999999988888777899999999999
Q ss_pred HHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCcEEEEcCCCccccCCcEEEEEEeCCEEEEEEEecCChHH
Q 013890 324 QAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEE 403 (434)
Q Consensus 324 ~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~~~~~ 403 (434)
.+...+....+ ..++++|++++.+|++.|...|...++.+.+|+.+ ..+|+.+|++ +..+++.+-+....+
T Consensus 375 ~av~ai~~~~~----~~~~~lPyf~t~~f~~~~~~~G~g~~~~v~~G~~e----~~~f~ay~~k-~~~v~a~~~~g~~~~ 445 (478)
T KOG1336|consen 375 QAVKAIKMAPQ----DAYDYLPYFYTRFFSLSWRFAGDGVGDVVLFGDLE----PGSFGAYWIK-GDKVGAVAEGGRDEE 445 (478)
T ss_pred hhhhhhhccCc----ccccccchHHHHHhhhhccccCcCccceeeecccc----cccceeeEee-ccEEEEEeccCCChH
Confidence 88877766543 23889999999999999999898888888999887 4569999999 999999999877777
Q ss_pred HHHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890 404 NKAIAKVARVQPSVESLDVLKNEGLSFASK 433 (434)
Q Consensus 404 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 433 (434)
.++++.++++|..+..++.+...+.+|+..
T Consensus 446 ~~~~a~l~~~~~~v~~~~~~~~~~~~~~~~ 475 (478)
T KOG1336|consen 446 VSQFAKLARQGPEVTSLKLLSKSGDSFWLT 475 (478)
T ss_pred HHHHHHHHhcCCcchhhhhccccchhhHHh
Confidence 799999999999999889999888888764
No 5
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=6.7e-52 Score=405.95 Aligned_cols=406 Identities=21% Similarity=0.285 Sum_probs=312.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHCC
Q 013890 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 86 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (434)
+|||||||+||+++|..|++.+. ..+|+|||+++.+.|..+.+.. +..... ..+ ........+.+++.+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~-~~~Vtli~~~~~~~~~~~~~~~-~~~~~~--~~~-------~~~~~~~~~~~~~~g 70 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNK-ELEITVYEKTDIVSFGACGLPY-FVGGFF--DDP-------NTMIARTPEEFIKSG 70 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCC-CCcEEEEECCCcceeecCCCce-Eecccc--CCH-------HHhhcCCHHHHHHCC
Confidence 69999999999999999999763 4569999999877665432221 110000 000 000134456778889
Q ss_pred cEEEcCCeEEEEeCCCCEEEcCC---CcEEE--eceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhc
Q 013890 87 IELILSTEIVRADIASKTLLSAT---GLIFK--YQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAK 161 (434)
Q Consensus 87 v~~~~~~~v~~i~~~~~~v~~~~---~~~~~--~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~ 161 (434)
++++.+++|+.++++.+.+.+.+ +..+. ||+||||||++|..|+ ++|.+.++++++++..++.++.+.+...
T Consensus 71 v~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~---i~g~~~~~v~~~~~~~~~~~l~~~l~~~ 147 (444)
T PRK09564 71 IDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPP---IKNINLENVYTLKSMEDGLALKELLKDE 147 (444)
T ss_pred CeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCC---CCCcCCCCEEEECCHHHHHHHHHHHhhc
Confidence 99998889999999998887754 55666 9999999999998887 5666667899999998888888887665
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEE
Q 013890 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNE 241 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~ 241 (434)
.+++++|+|+|++|+|+|..|.+.|.+|+++++.+++++..+++++.+.+.+.+++.||++++++.+.++.. ++.+..
T Consensus 148 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~ 225 (444)
T PRK09564 148 EIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEG 225 (444)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEE
Confidence 689999999999999999999999999999999988887557999999999999999999999999999965 444445
Q ss_pred EEeCCCcEEEcCEEEEccCCccChhhhhc-cccc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHH
Q 013890 242 VKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHAR 319 (434)
Q Consensus 242 v~~~~g~~i~~d~vv~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~ 319 (434)
+.+++ .++++|.+++|+|++|++++++. ++.. ++|+|.||+++||++|||||+|||+..+....+...+.+++..|.
T Consensus 226 v~~~~-~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~ 304 (444)
T PRK09564 226 VVTDK-GEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTAN 304 (444)
T ss_pred EEeCC-CEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHH
Confidence 55554 47999999999999999987754 5665 568899999999999999999999987655444444457888999
Q ss_pred HHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCcE---------EEEcCCCc----cccCCcEEEEEE
Q 013890 320 KSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT---------VLFGDNDL----ASATHKFGTYWI 386 (434)
Q Consensus 320 ~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~---------~~~~~~~~----~~~~~~~~~~~~ 386 (434)
+||+++|+||++.... .+ ...+.....+++..+..+|.++.+. ..+..... .....+|+|+++
T Consensus 305 ~qg~~~a~ni~g~~~~---~~-~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~klv~ 380 (444)
T PRK09564 305 KLGRMVGENLAGRHVS---FK-GTLGSACIKVLDLEAARTGLTEEEAKKLGIDYKTVFIKDKNHTNYYPGQEDLYVKLIY 380 (444)
T ss_pred HHHHHHHHHhcCCCCC---CC-CcccceEEEECCEEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEE
Confidence 9999999999975321 11 2222223334566666778775321 11111111 123567898887
Q ss_pred --eCCEEEEEEEecCC-hHHH-HHHHHHHHcCCCCCChhhhhccC-CCcccc
Q 013890 387 --KDGKVVGVFLESGT-PEEN-KAIAKVARVQPSVESLDVLKNEG-LSFASK 433 (434)
Q Consensus 387 --~~~~ilG~~~~g~~-~~~~-~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~ 433 (434)
++++|||+|++|+. ++++ +.++.+|++++|++|+..+..+. ++|++.
T Consensus 381 ~~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~ 432 (444)
T PRK09564 381 EADTKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELGMMDFCYAPPFART 432 (444)
T ss_pred ECCCCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCCC
Confidence 58999999999986 7675 99999999999999998887666 778765
No 6
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=1.2e-52 Score=412.08 Aligned_cols=400 Identities=19% Similarity=0.259 Sum_probs=294.3
Q ss_pred CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCCccccccCCCCC------CCCCCccee--
Q 013890 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEGT------ARLPGFHVC-- 69 (434)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~~------~~~~~~~~~-- 69 (434)
||+.+|||+||||||||++||..|+++|++ |+|||+.... ....|.+++.++..... ....++...
T Consensus 1 ~~~~~~DvvVIG~GpaG~~aA~~aa~~G~~---v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~ 77 (463)
T PRK06370 1 TPAQRYDAIVIGAGQAGPPLAARAAGLGMK---VALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGP 77 (463)
T ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCe---EEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCcc
Confidence 788889999999999999999999999987 9999997432 12223444433321100 000111000
Q ss_pred cCCC--------------CCCCCHhHHHHC-CcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCC
Q 013890 70 VGSG--------------GERLLPEWYKEK-GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGV 134 (434)
Q Consensus 70 ~~~~--------------~~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i 134 (434)
...+ .......++++. +++++.++.+. .+.+++.+ ++.++.||++|||||++|..|+ +
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~---~~~~~v~v-~~~~~~~d~lViATGs~p~~p~---i 150 (463)
T PRK06370 78 VSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARF---ESPNTVRV-GGETLRAKRIFINTGARAAIPP---I 150 (463)
T ss_pred CccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEE---ccCCEEEE-CcEEEEeCEEEEcCCCCCCCCC---C
Confidence 0000 001233455565 89999885543 34667766 4567999999999999999888 4
Q ss_pred CCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHH
Q 013890 135 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY 214 (434)
Q Consensus 135 ~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (434)
+|.+...+++..+..+.. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.
T Consensus 151 ~G~~~~~~~~~~~~~~~~--------~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~~~~~~~~l~~~ 221 (463)
T PRK06370 151 PGLDEVGYLTNETIFSLD--------ELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-EDEDVAAAVREI 221 (463)
T ss_pred CCCCcCceEcchHhhCcc--------ccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-cCHHHHHHHHHH
Confidence 665555566543332211 14789999999999999999999999999999999998886 689999999999
Q ss_pred HHHcCcEEEcCCeEEEEEecCCCcEEEEEeC-CCcEEEcCEEEEccCCccChh-h-h-hccccc-cCCcEEeCCCCCCCC
Q 013890 215 YANKGIKIIKGTVAVGFTTNADGEVNEVKLK-DGRTLEADIVVVGVGGRPLIS-L-F-KGQVAE-NKGGIETDDFFKTSA 289 (434)
Q Consensus 215 l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~-~g~~i~~d~vv~a~G~~p~~~-~-~-~~~~~~-~~g~i~vd~~~~t~~ 289 (434)
+++.||++++++.+.+++..+++....+... +++++++|.||+|+|++|+++ + + ..++.. .+|+|.||+++||++
T Consensus 222 l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~~ 301 (463)
T PRK06370 222 LEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTTN 301 (463)
T ss_pred HHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcCCC
Confidence 9999999999999999987333322223322 345799999999999999998 3 2 335555 568899999999999
Q ss_pred CceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCc----
Q 013890 290 DDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD---- 365 (434)
Q Consensus 290 ~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~---- 365 (434)
|+|||+|||++.+ .....|..||++||+||++.... ...+..+|+..+..|+++.+ |+++.+
T Consensus 302 ~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~~--~~~~~~~p~~~~~~p~ia~v--G~te~~a~~~ 367 (463)
T PRK06370 302 PGIYAAGDCNGRG----------AFTHTAYNDARIVAANLLDGGRR--KVSDRIVPYATYTDPPLARV--GMTEAEARKS 367 (463)
T ss_pred CCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHhCCCCC--CcccccCCeEEEcCCCcEee--eCCHHHHHHc
Confidence 9999999999754 34667899999999999875322 24556788877776666555 766521
Q ss_pred --EEEE-----cCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013890 366 --TVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 366 --~~~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 432 (434)
.+.. .+..++ ...++|+|+++ ++++|||+|++|++++++ +.++.+|++++|++||..+.-+.+|++|
T Consensus 368 g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 447 (463)
T PRK06370 368 GRRVLVGTRPMTRVGRAVEKGETQGFMKVVVDADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTLSRAIHIHPTVSE 447 (463)
T ss_pred CCCeEEEEEecCcchhHHhcCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCChHH
Confidence 1111 111111 24578999888 489999999999999887 9999999999999999999999999887
Q ss_pred c
Q 013890 433 K 433 (434)
Q Consensus 433 ~ 433 (434)
.
T Consensus 448 ~ 448 (463)
T PRK06370 448 L 448 (463)
T ss_pred H
Confidence 4
No 7
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=2.8e-52 Score=410.08 Aligned_cols=400 Identities=18% Similarity=0.194 Sum_probs=297.9
Q ss_pred CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC----CCCCCccccccCCCC----CCCCCCc---cee
Q 013890 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP----YERPALSKAYLFPEG----TARLPGF---HVC 69 (434)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~----~~~~~~~~~~~~~~~----~~~~~~~---~~~ 69 (434)
|++.+|||+||||||||++||..|+++|++ |+|||+.+..+ +..+.+++.+..... ....+.+ ...
T Consensus 1 ~~~~~yDvvVIGaGpaG~~aA~~la~~G~~---v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~ 77 (461)
T PRK05249 1 MHMYDYDLVVIGSGPAGEGAAMQAAKLGKR---VAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVK 77 (461)
T ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCE---EEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCc
Confidence 777789999999999999999999999987 99999964322 122333332211000 0000000 000
Q ss_pred cCCC--------------CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCCc--EEEeceEEEccCCCcccccCCC
Q 013890 70 VGSG--------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVLRLTDFG 133 (434)
Q Consensus 70 ~~~~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~lilAtG~~~~~p~~~~ 133 (434)
.... ......+++++.+++++.+ .+..++.....+...++. .+.||++|||||++|..|+.
T Consensus 78 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~-- 154 (461)
T PRK05249 78 LRITFADLLARADHVINKQVEVRRGQYERNRVDLIQG-RARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPD-- 154 (461)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCC--
Confidence 0000 0012234456779999988 555565544445555553 78999999999999998874
Q ss_pred CCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHH
Q 013890 134 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG 213 (434)
Q Consensus 134 i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~ 213 (434)
++.+..++++.. ++..+. ..+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+
T Consensus 155 -~~~~~~~v~~~~---~~~~~~-----~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~ 224 (461)
T PRK05249 155 -VDFDHPRIYDSD---SILSLD-----HLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF-LDDEISDALSY 224 (461)
T ss_pred -CCCCCCeEEcHH---Hhhchh-----hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc-CCHHHHHHHHH
Confidence 344445555433 222221 14799999999999999999999999999999999999886 79999999999
Q ss_pred HHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCCCCCCCC
Q 013890 214 YYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSA 289 (434)
Q Consensus 214 ~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~ 289 (434)
.+++.||++++++.+++++..+++ ..+.+.+|+++++|.|++|+|++|+++++ ..++.. .+|+|.||+++||+.
T Consensus 225 ~l~~~gI~v~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~ 302 (461)
T PRK05249 225 HLRDSGVTIRHNEEVEKVEGGDDG--VIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAV 302 (461)
T ss_pred HHHHcCCEEEECCEEEEEEEeCCe--EEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCC
Confidence 999999999999999999863333 34667788899999999999999999854 345555 568899999999999
Q ss_pred CceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCc----
Q 013890 290 DDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD---- 365 (434)
Q Consensus 290 ~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~---- 365 (434)
|+|||+|||++.+ ..+..|..||+.||.||++... ...+..+|+.+++.|+++.+ |+++.+
T Consensus 303 ~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~---~~~~~~~p~~i~~~p~ia~v--G~te~~a~~~ 367 (461)
T PRK05249 303 PHIYAVGDVIGFP----------SLASASMDQGRIAAQHAVGEAT---AHLIEDIPTGIYTIPEISSV--GKTEQELTAA 367 (461)
T ss_pred CCEEEeeecCCCc----------ccHhHHHHHHHHHHHHHcCCCc---ccccCCCCeEEECCCcceEe--cCCHHHHHHc
Confidence 9999999999754 4567899999999999996432 25677899999998887666 766521
Q ss_pred --EEE-----EcCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013890 366 --TVL-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 366 --~~~-----~~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 432 (434)
.+. +....++ ...++|+|+++ ++++|||+|++|++++|+ +.++.||++++|++||..+..+.+++++
T Consensus 368 g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e 447 (461)
T PRK05249 368 KVPYEVGRARFKELARAQIAGDNVGMLKILFHRETLEILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNTTFNYPTMAE 447 (461)
T ss_pred CCCeEEEEEccccccceeecCCCCcEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHH
Confidence 111 1112211 24578999887 579999999999999887 9999999999999999999999999886
Q ss_pred c
Q 013890 433 K 433 (434)
Q Consensus 433 ~ 433 (434)
.
T Consensus 448 ~ 448 (461)
T PRK05249 448 A 448 (461)
T ss_pred H
Confidence 4
No 8
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=8.1e-52 Score=403.02 Aligned_cols=396 Identities=17% Similarity=0.222 Sum_probs=293.1
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCCccccccCCCCC----CCCCCcceecC----C
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEGT----ARLPGFHVCVG----S 72 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~ 72 (434)
++|||+||||||||++||..|+++|++ |+|||++... ....|.+++.++..... ...+.+..... .
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~---V~liE~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 77 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAK---ALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTF 77 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCc---EEEecccccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCcc
Confidence 469999999999999999999999987 9999997532 12234445443322110 00111100000 0
Q ss_pred C--------------CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccc-cCCCCCCC
Q 013890 73 G--------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRL-TDFGVEGA 137 (434)
Q Consensus 73 ~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p-~~~~i~g~ 137 (434)
. ........+++.+++++.++.+. .+.++|.+ ++..+.||++|||||++|..| + ++|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~---~~~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~---i~g~ 150 (450)
T TIGR01421 78 NWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARF---TKDGTVEV-NGRDYTAPHILIATGGKPSFPEN---IPGA 150 (450)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ccCCEEEE-CCEEEEeCEEEEecCCCCCCCCC---CCCC
Confidence 0 00112334556799999985443 24566665 556799999999999999887 5 4554
Q ss_pred CCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHH
Q 013890 138 DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN 217 (434)
Q Consensus 138 ~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 217 (434)
+. .+ +.++...+. . .+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +|+++.+.+.+.+++
T Consensus 151 ~~--~~---~~~~~~~~~----~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~-~d~~~~~~~~~~l~~ 219 (450)
T TIGR01421 151 EL--GT---DSDGFFALE----E-LPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS-FDSMISETITEEYEK 219 (450)
T ss_pred ce--eE---cHHHhhCcc----c-cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc-cCHHHHHHHHHHHHH
Confidence 31 11 223322221 1 4789999999999999999999999999999999998876 799999999999999
Q ss_pred cCcEEEcCCeEEEEEecCCCcEEEEEeCCC-cEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCCCCCCCCCce
Q 013890 218 KGIKIIKGTVAVGFTTNADGEVNEVKLKDG-RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDV 292 (434)
Q Consensus 218 ~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g-~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~i 292 (434)
.||++++++.++++..+.++ ...+.+++| +++++|.|++|+|++|+++.+ ..++.. .+|+|.||+++||++|+|
T Consensus 220 ~gI~i~~~~~v~~i~~~~~~-~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~I 298 (450)
T TIGR01421 220 EGINVHKLSKPVKVEKTVEG-KLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGI 298 (450)
T ss_pred cCCEEEcCCEEEEEEEeCCc-eEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCCCCE
Confidence 99999999999999863333 235677777 579999999999999999853 345655 568899999999999999
Q ss_pred EEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCcE------
Q 013890 293 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT------ 366 (434)
Q Consensus 293 ya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~------ 366 (434)
||+|||++.+ ..+..|..||+.+|+||++.... ....+..+|+++++.|+++.+ |+++.+.
T Consensus 299 yAiGD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~~~p~~~f~~p~ia~v--Glte~~a~~~~g~ 365 (450)
T TIGR01421 299 YALGDVVGKV----------ELTPVAIAAGRKLSERLFNGKTD-DKLDYNNVPTVVFSHPPIGTI--GLTEKEAIEKYGK 365 (450)
T ss_pred EEEEecCCCc----------ccHHHHHHHHHHHHHHHhcCCCC-CccCcccCCeEEeCCCceEEE--eCCHHHHHhhcCC
Confidence 9999999754 34677899999999999864321 235678899999888888776 6665221
Q ss_pred --EEEcCCC--cc------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890 367 --VLFGDND--LA------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK 433 (434)
Q Consensus 367 --~~~~~~~--~~------~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 433 (434)
+.....+ .. ...++|+|+++ ++++|||+|++|++++|+ +.++.||++++|++||..+..+.++++|.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~ 445 (450)
T TIGR01421 366 ENIKVYNSSFTPMYYAMTSEKQKCRMKLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSSEE 445 (450)
T ss_pred CCEEEEEEEcChhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHH
Confidence 1111111 10 24567898877 589999999999999997 99999999999999999999999999875
Q ss_pred C
Q 013890 434 I 434 (434)
Q Consensus 434 ~ 434 (434)
+
T Consensus 446 ~ 446 (450)
T TIGR01421 446 L 446 (450)
T ss_pred H
Confidence 3
No 9
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=5.6e-52 Score=404.75 Aligned_cols=395 Identities=21% Similarity=0.273 Sum_probs=295.3
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCCccccccCCCCC----CCCCCcceecCC-----
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEGT----ARLPGFHVCVGS----- 72 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----- 72 (434)
+|||+||||||||++||..++++|++ |+|+|++... ....|.+++.++..... ...+.+......
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~---V~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 78 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAK---VAIAEEPRVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDW 78 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCc---EEEEecCccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCH
Confidence 59999999999999999999999987 9999996431 12234455544322111 111111110000
Q ss_pred ------------CCCCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCC
Q 013890 73 ------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAK 140 (434)
Q Consensus 73 ------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~ 140 (434)
.....+...+++.+++++.+ ++..+++....+. .+++.+.||+||||||++|..|+ ++|.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~~~v~v~-~~g~~~~~d~lIiATGs~p~~p~---i~G~~~- 152 (446)
T TIGR01424 79 KKLLQKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGPNTVEVL-QDGTTYTAKKILIAVGGRPQKPN---LPGHEL- 152 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEe-cCCeEEEcCEEEEecCCcCCCCC---CCCccc-
Confidence 00112334456789999987 7777765433332 45678999999999999998887 455431
Q ss_pred CEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCc
Q 013890 141 NIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGI 220 (434)
Q Consensus 141 ~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV 220 (434)
.. +..++..+. ..+++++|||+|++|+|+|..+.+.|.+|+++++.+.+++. +++++.+.+.+.+++.||
T Consensus 153 -~~---~~~~~~~l~-----~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV 222 (446)
T TIGR01424 153 -GI---TSNEAFHLP-----TLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG-FDDDMRALLARNMEGRGI 222 (446)
T ss_pred -ee---chHHhhccc-----ccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc-cCHHHHHHHHHHHHHCCC
Confidence 12 223333221 14789999999999999999999999999999999988876 799999999999999999
Q ss_pred EEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCCCCCCCCCceEEec
Q 013890 221 KIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVG 296 (434)
Q Consensus 221 ~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~iya~G 296 (434)
++++++.+.++...+++ ..+.+.+|+++++|.|++|+|++|+++.+ ..++.. ++|+|.||+++||++|||||+|
T Consensus 223 ~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~G 300 (446)
T TIGR01424 223 RIHPQTSLTSITKTDDG--LKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVG 300 (446)
T ss_pred EEEeCCEEEEEEEcCCe--EEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEEEee
Confidence 99999999999863333 45667788899999999999999999853 345655 5688999999999999999999
Q ss_pred ccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCc-------EEEE
Q 013890 297 DVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD-------TVLF 369 (434)
Q Consensus 297 d~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~-------~~~~ 369 (434)
||++.+ .....|.+||++|++||++.... ...+..+|+.+++.|+++.+ |+++.+ .+..
T Consensus 301 D~~~~~----------~l~~~A~~~g~~~a~~i~~~~~~--~~~~~~~p~~if~~p~ia~v--G~te~~a~~~~~~~~~~ 366 (446)
T TIGR01424 301 DVTDRI----------NLTPVAIMEATCFANTEFGNNPT--KFDHDLIATAVFSQPPLGTV--GLTEEEAREKFTGDILV 366 (446)
T ss_pred ccCCCc----------cchhHHHHHHHHHHHHHhcCCCC--ccCcCCCCeEEeCCchhEEE--ECCHHHHHhhcCCCEEE
Confidence 999743 45678999999999999874321 25667899999988877766 765421 1111
Q ss_pred cCCC-----c---cccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCccccC
Q 013890 370 GDND-----L---ASATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASKI 434 (434)
Q Consensus 370 ~~~~-----~---~~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 434 (434)
...+ . ....++|+|+++ ++++|||+|++|++++|+ +.++.+|++++|++||..+..+.++++|.+
T Consensus 367 ~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~ 442 (446)
T TIGR01424 367 YRAGFRPMKNTFSGRQEKTLMKLVVDEKDDKVLGAHMVGPDAAEIIQGIAIALKMGATKADFDSTVGIHPSSAEEF 442 (446)
T ss_pred EEEecCchHhHhhcCCCceEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCChHHHH
Confidence 1111 0 124568999888 589999999999999887 999999999999999999999999998753
No 10
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=1.6e-51 Score=403.02 Aligned_cols=398 Identities=21% Similarity=0.242 Sum_probs=295.4
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCCccccccCCCCC----CC-CCCcceecCCC
Q 013890 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEGT----AR-LPGFHVCVGSG 73 (434)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~ 73 (434)
|+..|||+||||||||++||..|+++|++ |+|||++... ....|.+++.++..... .. .+.+.......
T Consensus 1 m~~~~DvvVIG~GpaG~~aA~~~a~~G~~---V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~ 77 (450)
T PRK06116 1 MTKDYDLIVIGGGSGGIASANRAAMYGAK---VALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTEN 77 (450)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCC
Confidence 34569999999999999999999999987 9999997431 12224444433322100 00 00000000000
Q ss_pred -----------------CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCC
Q 013890 74 -----------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEG 136 (434)
Q Consensus 74 -----------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g 136 (434)
......+.+.+.+++++.+ .+..++ .++|.+ +++++.||+||||||++|..|+ ++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~v~--~~~v~~-~g~~~~~d~lViATGs~p~~p~---i~g 150 (450)
T PRK06116 78 KFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEG-FARFVD--AHTVEV-NGERYTADHILIATGGRPSIPD---IPG 150 (450)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEcc--CCEEEE-CCEEEEeCEEEEecCCCCCCCC---CCC
Confidence 0011223355679999998 565554 467777 6778999999999999998887 455
Q ss_pred CCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHH
Q 013890 137 ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA 216 (434)
Q Consensus 137 ~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~ 216 (434)
.+ .+++ ..+...+. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.++
T Consensus 151 ~~--~~~~---~~~~~~~~-----~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~L~ 219 (450)
T PRK06116 151 AE--YGIT---SDGFFALE-----ELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRG-FDPDIRETLVEEME 219 (450)
T ss_pred cc--eeEc---hhHhhCcc-----ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccc-cCHHHHHHHHHHHH
Confidence 32 2222 22222211 14789999999999999999999999999999999888775 79999999999999
Q ss_pred HcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCCCCCCCCCce
Q 013890 217 NKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDV 292 (434)
Q Consensus 217 ~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~i 292 (434)
+.||++++++.|.+++.++++. ..+.+.+|+++++|.|++|+|++|+++.+ ..++.. .+|+|.||+++||++|||
T Consensus 220 ~~GV~i~~~~~V~~i~~~~~g~-~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~I 298 (450)
T PRK06116 220 KKGIRLHTNAVPKAVEKNADGS-LTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGI 298 (450)
T ss_pred HCCcEEECCCEEEEEEEcCCce-EEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCCCCE
Confidence 9999999999999998744443 35777888899999999999999999843 345655 568899999999999999
Q ss_pred EEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCC-------c
Q 013890 293 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG-------D 365 (434)
Q Consensus 293 ya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~-------~ 365 (434)
||+|||++.+ +++..|..||+.||+||++.... ....|..+|+.+++.|+++.+ |+++. +
T Consensus 299 yA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~-~~~~~~~~p~~if~~p~~a~v--Glte~~a~~~~~~ 365 (450)
T PRK06116 299 YAVGDVTGRV----------ELTPVAIAAGRRLSERLFNNKPD-EKLDYSNIPTVVFSHPPIGTV--GLTEEEAREQYGE 365 (450)
T ss_pred EEEeecCCCc----------CcHHHHHHHHHHHHHHHhCCCCC-CcCCcCCCCeEEeCCCccEEe--eCCHHHHHHhCCC
Confidence 9999999643 45778999999999999874321 125778899999888877766 66542 1
Q ss_pred -EEEEcCCCc-----c---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890 366 -TVLFGDNDL-----A---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK 433 (434)
Q Consensus 366 -~~~~~~~~~-----~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 433 (434)
.+.....+. . ..+++|+|+++ ++++|||+|++|++++|+ +.++.||++++|++||..+..+.+|++|.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~ 445 (450)
T PRK06116 366 DNVKVYRSSFTPMYTALTGHRQPCLMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAEE 445 (450)
T ss_pred CcEEEEEEecchhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHH
Confidence 111111111 1 24678999888 579999999999999887 99999999999999999999999999875
Q ss_pred C
Q 013890 434 I 434 (434)
Q Consensus 434 ~ 434 (434)
+
T Consensus 446 ~ 446 (450)
T PRK06116 446 F 446 (450)
T ss_pred H
Confidence 3
No 11
>PLN02507 glutathione reductase
Probab=100.00 E-value=2.6e-51 Score=402.94 Aligned_cols=395 Identities=19% Similarity=0.220 Sum_probs=295.0
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC---------CC----CCCCCCCccccccCCCCC----CCCCCcc
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE---------AV----APYERPALSKAYLFPEGT----ARLPGFH 67 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~---------~~----~~~~~~~~~~~~~~~~~~----~~~~~~~ 67 (434)
+||++||||||+|+.||..++++|.+ |+|||+. .. +....|.+++.++..... .....+.
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~---V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G 101 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAK---VGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYG 101 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcC
Confidence 58999999999999999999999987 9999962 11 112224445554322110 0000010
Q ss_pred eecCC----C--------------CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCCc--EEEeceEEEccCCCcc
Q 013890 68 VCVGS----G--------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVL 127 (434)
Q Consensus 68 ~~~~~----~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~lilAtG~~~~ 127 (434)
..... . ....+...+.+.+++++.+ ++..+++....|...+++ .+.||+||||||++|.
T Consensus 102 ~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~ 180 (499)
T PLN02507 102 WEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQ 180 (499)
T ss_pred cccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCC
Confidence 00000 0 0011223445579999998 777787776677766765 5889999999999998
Q ss_pred cccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHH
Q 013890 128 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADI 207 (434)
Q Consensus 128 ~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~ 207 (434)
.|+ ++|.+ ..+ +.+++..+. . .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++
T Consensus 181 ~p~---ipG~~--~~~---~~~~~~~l~----~-~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~ 246 (499)
T PLN02507 181 RPN---IPGKE--LAI---TSDEALSLE----E-LPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG-FDDEM 246 (499)
T ss_pred CCC---CCCcc--cee---chHHhhhhh----h-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc-cCHHH
Confidence 887 45532 122 334443332 1 4789999999999999999999999999999999888876 79999
Q ss_pred HHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCC
Q 013890 208 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDD 283 (434)
Q Consensus 208 ~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~ 283 (434)
.+.+.+.+++.||++++++.|++++..+++ ..+.+.+|+++++|.|++++|++|+++++ ..++.. .+|+|.||+
T Consensus 247 ~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~--~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~ 324 (499)
T PLN02507 247 RAVVARNLEGRGINLHPRTNLTQLTKTEGG--IKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDE 324 (499)
T ss_pred HHHHHHHHHhCCCEEEeCCEEEEEEEeCCe--EEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCC
Confidence 999999999999999999999999863333 45677788899999999999999999864 335665 568899999
Q ss_pred CCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCC
Q 013890 284 FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV 363 (434)
Q Consensus 284 ~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~ 363 (434)
++||++|||||+|||++.+ .....|.+||+++++||++.... ...+..+|+.+++.|+++.+ |+++
T Consensus 325 ~~~Ts~p~IyAiGDv~~~~----------~l~~~A~~qg~~aa~ni~g~~~~--~~~~~~~p~~if~~p~ia~v--Glte 390 (499)
T PLN02507 325 YSRTNIPSIWAIGDVTNRI----------NLTPVALMEGTCFAKTVFGGQPT--KPDYENVACAVFCIPPLSVV--GLSE 390 (499)
T ss_pred CCcCCCCCEEEeeEcCCCC----------ccHHHHHHHHHHHHHHHcCCCCC--cCCCCCCCeEEECCCccEEE--eCCH
Confidence 9999999999999999754 35678999999999999875321 24567789988888887766 7654
Q ss_pred Cc-------EEEEcC--CCcc------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhc
Q 013890 364 GD-------TVLFGD--NDLA------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKN 425 (434)
Q Consensus 364 ~~-------~~~~~~--~~~~------~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~ 425 (434)
.+ .+.... ..+. ...++|+|+++ ++++|||+|++|++++++ +.++.||++++|++||..+..
T Consensus 391 ~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~ 470 (499)
T PLN02507 391 EEAVEQAKGDILVFTSSFNPMKNTISGRQEKTVMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDSTVG 470 (499)
T ss_pred HHHHhccCCCEEEEEeecCccccccccCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcCc
Confidence 21 111111 1110 13567899887 579999999999999887 999999999999999999999
Q ss_pred cCCCcccc
Q 013890 426 EGLSFASK 433 (434)
Q Consensus 426 ~~~~~~~~ 433 (434)
+.+|++|.
T Consensus 471 ~hPt~~E~ 478 (499)
T PLN02507 471 IHPSAAEE 478 (499)
T ss_pred CCCChHHH
Confidence 99999874
No 12
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=3.4e-51 Score=400.90 Aligned_cols=396 Identities=19% Similarity=0.229 Sum_probs=286.6
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC----CCCCCccccccCCCCC----CCCCCcceecCCC
Q 013890 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP----YERPALSKAYLFPEGT----ARLPGFHVCVGSG 73 (434)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~----~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 73 (434)
|+.+|||+||||||||++||..|+++|++ |+|||+.+..+ ...|.+++.++..... .....+.......
T Consensus 1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~---V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~ 77 (471)
T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLE---TVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEP 77 (471)
T ss_pred CCccceEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCC
Confidence 44569999999999999999999999987 99999874321 1224444444321100 0000000000000
Q ss_pred -----------------CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCEE--EcCCC--cEEEeceEEEccCCCcccccCC
Q 013890 74 -----------------GERLLPEWYKEKGIELILSTEIVRADIASKTL--LSATG--LIFKYQILVIATGSTVLRLTDF 132 (434)
Q Consensus 74 -----------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v--~~~~~--~~~~~d~lilAtG~~~~~p~~~ 132 (434)
........+++.+++++.+ .+..++ .+++ ...++ .++.||+||||||++|+.++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g-~a~~~~--~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~- 153 (471)
T PRK06467 78 KIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNG-LGKFTG--GNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPF- 153 (471)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEcc--CCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCC-
Confidence 0011223455679999988 444443 4444 33445 479999999999999975443
Q ss_pred CCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHH
Q 013890 133 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYE 212 (434)
Q Consensus 133 ~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~ 212 (434)
+++ +..++++ ..++..+. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.
T Consensus 154 -~~~-~~~~v~~---~~~~~~~~-----~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~-~d~~~~~~~~ 222 (471)
T PRK06467 154 -IPH-DDPRIWD---STDALELK-----EVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA-ADKDIVKVFT 222 (471)
T ss_pred -CCC-CCCcEEC---hHHhhccc-----cCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc-CCHHHHHHHH
Confidence 333 2344543 23333321 14789999999999999999999999999999999999987 7999999999
Q ss_pred HHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCC--C--cEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCCC
Q 013890 213 GYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKD--G--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDF 284 (434)
Q Consensus 213 ~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~--g--~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~ 284 (434)
+.+++. |++++++.+.+++..+++ ..+.+.+ + +++++|.|++|+|++|+++++ ..++.. ++|+|.||++
T Consensus 223 ~~l~~~-v~i~~~~~v~~i~~~~~~--~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~ 299 (471)
T PRK06467 223 KRIKKQ-FNIMLETKVTAVEAKEDG--IYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQ 299 (471)
T ss_pred HHHhhc-eEEEcCCEEEEEEEcCCE--EEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCC
Confidence 999988 999999999999863333 3454433 2 469999999999999999854 335666 5788999999
Q ss_pred CCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCC
Q 013890 285 FKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG 364 (434)
Q Consensus 285 ~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~ 364 (434)
+||++|+|||+|||++.+ ..+..|.+||+.||.||++... ...+..+|+.++..|+++.+ |+++.
T Consensus 300 ~~t~~p~VyAiGDv~~~~----------~la~~A~~eG~~aa~~i~g~~~---~~~~~~~p~~~~~~p~ia~v--Glte~ 364 (471)
T PRK06467 300 CRTNVPHIFAIGDIVGQP----------MLAHKGVHEGHVAAEVIAGKKH---YFDPKVIPSIAYTEPEVAWV--GLTEK 364 (471)
T ss_pred cccCCCCEEEehhhcCCc----------ccHHHHHHHHHHHHHHHcCCCC---CCCCCCCCeEEECCCceeEE--ECCHH
Confidence 999999999999999754 4577899999999999987532 25667789887666666555 77652
Q ss_pred c------EEE-----EcCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccC
Q 013890 365 D------TVL-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEG 427 (434)
Q Consensus 365 ~------~~~-----~~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~ 427 (434)
+ .+. +....++ ...++|+|+++ ++++|||+|++|++++|+ +.++.||++++|++||..+..+.
T Consensus 365 ea~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~~~~~~h 444 (471)
T PRK06467 365 EAKEEGIEYETATFPWAASGRAIASDCADGMTKLIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAH 444 (471)
T ss_pred HHHhcCCCeEEEEEecCcchhhhhCCCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCC
Confidence 1 111 1111111 24578999888 579999999999999887 99999999999999999998899
Q ss_pred CCcccc
Q 013890 428 LSFASK 433 (434)
Q Consensus 428 ~~~~~~ 433 (434)
++|++.
T Consensus 445 Pt~~e~ 450 (471)
T PRK06467 445 PTLHES 450 (471)
T ss_pred CChHHH
Confidence 998764
No 13
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=9.7e-51 Score=399.79 Aligned_cols=404 Identities=17% Similarity=0.197 Sum_probs=294.8
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC---CCCCCCCccccccCCCCCCC----CCCcceecCC--C-
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV---APYERPALSKAYLFPEGTAR----LPGFHVCVGS--G- 73 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~--~- 73 (434)
.+||++|||||+||++||..+++.|.+ |+|||++.. +....|.++|.++....... ...+...... +
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~---ValIEk~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~ 123 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAK---VALVEKDYLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNL 123 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCe---EEEEecccccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCH
Confidence 468999999999999999999999987 999999743 22334666676665433211 0001000000 0
Q ss_pred -------------CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCEE----------------------------EcCCCcE
Q 013890 74 -------------GERLLPEWYKEKGIELILSTEIVRADIASKTL----------------------------LSATGLI 112 (434)
Q Consensus 74 -------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v----------------------------~~~~~~~ 112 (434)
......+.+++.+++++.+...+. +.++| ...++.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~---~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~ 200 (561)
T PTZ00058 124 PLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLL---SENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQV 200 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEe---cCCEEEeeccccccccccccccccceeeeccceecCCCcE
Confidence 011233445667999998854221 12222 1245678
Q ss_pred EEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEE
Q 013890 113 FKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV 192 (434)
Q Consensus 113 ~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~ 192 (434)
+.||++|||||++|..|+ ++|.+ .+++ .++...+ . .+++++|||+|++|+|+|..|.++|.+|+++
T Consensus 201 i~ad~lVIATGS~P~~P~---IpG~~--~v~t---s~~~~~l----~--~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli 266 (561)
T PTZ00058 201 IEGKNILIAVGNKPIFPD---VKGKE--FTIS---SDDFFKI----K--EAKRIGIAGSGYIAVELINVVNRLGAESYIF 266 (561)
T ss_pred EECCEEEEecCCCCCCCC---CCCce--eEEE---HHHHhhc----c--CCCEEEEECCcHHHHHHHHHHHHcCCcEEEE
Confidence 999999999999998887 45542 2332 3333222 1 3789999999999999999999999999999
Q ss_pred eeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCC-CcEEEcCEEEEccCCccChhhhhc-
Q 013890 193 YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKD-GRTLEADIVVVGVGGRPLISLFKG- 270 (434)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~-g~~i~~d~vv~a~G~~p~~~~~~~- 270 (434)
++.+++++. +|+++.+.+.+.+++.||++++++.+.+++..+++.+ .+.+.+ ++++++|.|++|+|++|+++.+..
T Consensus 267 ~~~~~il~~-~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v-~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~ 344 (561)
T PTZ00058 267 ARGNRLLRK-FDETIINELENDMKKNNINIITHANVEEIEKVKEKNL-TIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLK 344 (561)
T ss_pred Eeccccccc-CCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcE-EEEECCCCEEEECCEEEECcCCCCCccccCcc
Confidence 999988875 7999999999999999999999999999986433333 333434 457999999999999999987642
Q ss_pred --cccccCCcEEeCCCCCCCCCceEEeccccccccc-----------------------ccCccc-ccccHHHHHHHHHH
Q 013890 271 --QVAENKGGIETDDFFKTSADDVYAVGDVATFPMK-----------------------LYREMR-RVEHVDHARKSAEQ 324 (434)
Q Consensus 271 --~~~~~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~-----------------------~~~~~~-~~~~~~~A~~~g~~ 324 (434)
++..++|+|.||+++||++|+|||+|||++.+.. ..+.+. ..+++..|.+||++
T Consensus 345 ~~~~~~~~G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~ 424 (561)
T PTZ00058 345 ALNIKTPKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRL 424 (561)
T ss_pred ccceecCCCeEEECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHH
Confidence 2333678899999999999999999999984321 122222 35778899999999
Q ss_pred HHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCcE--------EEEcCCCc------------cccCCcEEEE
Q 013890 325 AVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT--------VLFGDNDL------------ASATHKFGTY 384 (434)
Q Consensus 325 aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~--------~~~~~~~~------------~~~~~~~~~~ 384 (434)
||+||++.... ...+..+|+.+++.|+++.+ |+++.+. +.....+. .....+++|+
T Consensus 425 aa~ni~g~~~~--~~~~~~ip~~vft~peiA~v--Glte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kl 500 (561)
T PTZ00058 425 LADRLFGPFSR--TTNYKLIPSVIFSHPPIGTI--GLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKL 500 (561)
T ss_pred HHHHHhCCCCc--ccCCCCCCeEEeCCchheee--eCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEEEE
Confidence 99999975322 24677899988888887766 7665211 11110110 1124678998
Q ss_pred EE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890 385 WI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK 433 (434)
Q Consensus 385 ~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 433 (434)
++ ++++|||+|++|++++|+ +.++.||++++|++||..+..+.+++++.
T Consensus 501 i~~~~t~~ILG~~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPt~~e~ 552 (561)
T PTZ00058 501 VCVGKEELIKGLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAEE 552 (561)
T ss_pred EEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCChHHH
Confidence 87 589999999999999987 99999999999999999999999999875
No 14
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=3.3e-50 Score=394.67 Aligned_cols=398 Identities=19% Similarity=0.218 Sum_probs=292.1
Q ss_pred CCC-CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCCccccccCCCC----CCCCC---Cccee
Q 013890 1 MAE-KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEG----TARLP---GFHVC 69 (434)
Q Consensus 1 Mm~-~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~----~~~~~---~~~~~ 69 (434)
||+ ..|||+|||||+||++||..|++.|++ |+|||++... ....|.+++.++.... ....+ ++...
T Consensus 1 ~~~~~~~dviVIGaG~aG~~aA~~l~~~g~~---v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~ 77 (468)
T PRK14694 1 MMSDNNLHIAVIGSGGSAMAAALKATERGAR---VTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQ 77 (468)
T ss_pred CCCCCcCCEEEECCCHHHHHHHHHHHhCCCc---EEEEEccccccceecCCccccHHHHHHHHHHHHHhhccccCCcccC
Confidence 564 579999999999999999999999987 9999997531 1122334444321110 00000 00000
Q ss_pred -cCCC--------------C-CCCCHhHHHH-CCcEEEcCCeEEEEeCCCCEEEcCCC--cEEEeceEEEccCCCccccc
Q 013890 70 -VGSG--------------G-ERLLPEWYKE-KGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVLRLT 130 (434)
Q Consensus 70 -~~~~--------------~-~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lilAtG~~~~~p~ 130 (434)
.... . .......+++ .+++++.+ ++..++.....|.+.++ .++.||+||||||++|..|+
T Consensus 78 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g-~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~ 156 (468)
T PRK14694 78 APVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNG-EARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPP 156 (468)
T ss_pred CCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEE-EEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCC
Confidence 0000 0 0011222333 37999998 78888887777877776 47999999999999999888
Q ss_pred CCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHH
Q 013890 131 DFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAF 210 (434)
Q Consensus 131 ~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~ 210 (434)
+ +|.+...+++. .+...+. ..+++++|||+|++|+|+|..|.++|.+|+++.+. ++++. +++++.+.
T Consensus 157 i---~G~~~~~~~~~---~~~~~l~-----~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~-~~l~~-~~~~~~~~ 223 (468)
T PRK14694 157 V---PGLAETPYLTS---TSALELD-----HIPERLLVIGASVVALELAQAFARLGSRVTVLARS-RVLSQ-EDPAVGEA 223 (468)
T ss_pred C---CCCCCCceEcc---hhhhchh-----cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC-CCCCC-CCHHHHHH
Confidence 4 55443334432 2222221 14789999999999999999999999999999864 56665 78999999
Q ss_pred HHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhhh---ccccccCCcEEeCCCCCC
Q 013890 211 YEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFK---GQVAENKGGIETDDFFKT 287 (434)
Q Consensus 211 ~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~---~~~~~~~g~i~vd~~~~t 287 (434)
+.+.+++.||++++++.+.+++.+ +....+.+.++ ++++|.|++|+|++|+++++. .++..++|+|.||+++||
T Consensus 224 l~~~l~~~GI~v~~~~~v~~i~~~--~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~~~T 300 (468)
T PRK14694 224 IEAAFRREGIEVLKQTQASEVDYN--GREFILETNAG-TLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEHLQT 300 (468)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEc--CCEEEEEECCC-EEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCCccc
Confidence 999999999999999999999862 33334555544 799999999999999998752 345556788999999999
Q ss_pred CCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCc--
Q 013890 288 SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD-- 365 (434)
Q Consensus 288 ~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~-- 365 (434)
++|+|||+|||++.+ ..+..|..||+.||.||++... ..++..+|.+++..|+++.+ |+++.+
T Consensus 301 s~~~IyA~GD~~~~~----------~~~~~A~~~G~~aa~~i~~~~~---~~~~~~~p~~~~~~p~~a~v--Glte~~a~ 365 (468)
T PRK14694 301 TVSGIYAAGDCTDQP----------QFVYVAAAGGSRAAINMTGGDA---SLDLSAMPEVIFTDPQVATV--GLSEAEAQ 365 (468)
T ss_pred CCCCEEEEeecCCCc----------ccHHHHHHHHHHHHHHhcCCCc---ccccCCCCeEEECCCCeEEe--eCCHHHHH
Confidence 999999999999765 3466788999999999986532 25667789888777766655 776521
Q ss_pred ----EE-----EEcCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCc
Q 013890 366 ----TV-----LFGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSF 430 (434)
Q Consensus 366 ----~~-----~~~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~ 430 (434)
.+ .+...... ...++|+|+++ ++++|||+|++|++++|+ +.++.||++++|++||.++..+.+++
T Consensus 366 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~ 445 (468)
T PRK14694 366 AQGYDTDSRTLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIADELFPYLTM 445 (468)
T ss_pred HcCCceEEEEEecccchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCch
Confidence 11 11111111 24578999887 589999999999999887 99999999999999999999999999
Q ss_pred ccc
Q 013890 431 ASK 433 (434)
Q Consensus 431 ~~~ 433 (434)
+|.
T Consensus 446 ~e~ 448 (468)
T PRK14694 446 VEG 448 (468)
T ss_pred HHH
Confidence 874
No 15
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=1.3e-50 Score=395.36 Aligned_cols=395 Identities=20% Similarity=0.244 Sum_probs=290.5
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHc-CCCCCcEEEEeCC--------CC----CCCCCCCccccccCCCCC----CCCCCc
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKE--------AV----APYERPALSKAYLFPEGT----ARLPGF 66 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~-g~~~~~V~vie~~--------~~----~~~~~~~~~~~~~~~~~~----~~~~~~ 66 (434)
+.||++|||||++|..||..++++ |.+ |+|||++ .. +....|.++|.++..... .....+
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~---V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~ 78 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKR---VAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGF 78 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCE---EEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhcc
Confidence 569999999999999999999996 777 9999973 11 223346666665543311 111111
Q ss_pred ceecC--C---CC--------------CCCCHhHHHH-CCcEEEcCCeEEEEeCCCCEEEcCC--------CcEEEeceE
Q 013890 67 HVCVG--S---GG--------------ERLLPEWYKE-KGIELILSTEIVRADIASKTLLSAT--------GLIFKYQIL 118 (434)
Q Consensus 67 ~~~~~--~---~~--------------~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~~v~~~~--------~~~~~~d~l 118 (434)
..... . +. .....+++++ .+++++.+.. .- .+.++|.+.+ .+.+.||+|
T Consensus 79 gi~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a-~f--~~~~~v~V~~~~~~~~~~~~~~~~d~l 155 (486)
T TIGR01423 79 GWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWG-AL--EDKNVVLVRESADPKSAVKERLQAEHI 155 (486)
T ss_pred CeeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEE-EE--ccCCEEEEeeccCCCCCcceEEECCEE
Confidence 11100 0 00 0112223444 4899999843 22 3456665531 247999999
Q ss_pred EEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHC---CCeEEEEeeC
Q 013890 119 VIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN---NIDVSMVYPE 195 (434)
Q Consensus 119 ilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~---g~~v~~~~~~ 195 (434)
|||||++|..|+ ++|.+ .++ +..++..+. ..+++++|||+|++|+|+|..|..+ |.+|+++++.
T Consensus 156 IIATGs~p~~p~---i~G~~--~~~---~~~~~~~~~-----~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~ 222 (486)
T TIGR01423 156 LLATGSWPQMLG---IPGIE--HCI---SSNEAFYLD-----EPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRN 222 (486)
T ss_pred EEecCCCCCCCC---CCChh--hee---chhhhhccc-----cCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecC
Confidence 999999998887 45543 233 333332221 2578999999999999999877665 9999999999
Q ss_pred CccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh---hccc
Q 013890 196 PWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQV 272 (434)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~---~~~~ 272 (434)
+++++. +|+++.+.+.+.|++.||++++++.++++...+++ ...+.+.+|+++++|.|++|+|++|+++.+ ..++
T Consensus 223 ~~il~~-~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~-~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl 300 (486)
T TIGR01423 223 NMILRG-FDSTLRKELTKQLRANGINIMTNENPAKVTLNADG-SKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGV 300 (486)
T ss_pred Cccccc-cCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCc-eEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCc
Confidence 998876 79999999999999999999999999999863333 245677788899999999999999999865 2456
Q ss_pred cc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEee
Q 013890 273 AE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRA 351 (434)
Q Consensus 273 ~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~ 351 (434)
.. .+|+|.||+++||++|||||+|||++.+ .....|..||+++++||++.... ...+..+|+++++.
T Consensus 301 ~~~~~G~I~Vd~~l~Ts~~~IyA~GDv~~~~----------~l~~~A~~qG~~aa~ni~g~~~~--~~~~~~vp~~vft~ 368 (486)
T TIGR01423 301 ELTKKGAIQVDEFSRTNVPNIYAIGDVTDRV----------MLTPVAINEGAAFVDTVFGNKPR--KTDHTRVASAVFSI 368 (486)
T ss_pred eECCCCCEecCCCCcCCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHhCCCCc--ccCCCCCCEEEeCC
Confidence 65 5688999999999999999999999754 34667899999999999875321 24666799999998
Q ss_pred cCcceEEeecCCCcE------EE---E--cCCCcc--c--cCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHc
Q 013890 352 FDLSWQFYGDNVGDT------VL---F--GDNDLA--S--ATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARV 413 (434)
Q Consensus 352 ~~~~~~~~G~~~~~~------~~---~--~~~~~~--~--~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~ 413 (434)
|+++.+ |+++.+. +. . ...... . ..++|+|+++ ++++|||+|++|++++++ +.++.||++
T Consensus 369 peia~v--Glte~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI~~~~~ai~~ 446 (486)
T TIGR01423 369 PPIGTC--GLVEEDAAKKFEKVAVYESSFTPLMHNISGSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLKL 446 (486)
T ss_pred CceEEe--eCCHHHHHhcCCceEEEEEeeCchhhhhccCccCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHc
Confidence 887666 7665321 11 1 001000 1 1257888887 579999999999999887 999999999
Q ss_pred CCCCCChhhhhccCCCcccc
Q 013890 414 QPSVESLDVLKNEGLSFASK 433 (434)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~ 433 (434)
++|++||..+..+.++++|.
T Consensus 447 ~~t~~dl~~~~~~hPt~sE~ 466 (486)
T TIGR01423 447 NAKISDFYNTIGVHPTSAEE 466 (486)
T ss_pred CCCHHHHhhcccCCCCcHHH
Confidence 99999999999999999875
No 16
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=3.3e-50 Score=393.77 Aligned_cols=396 Identities=21% Similarity=0.254 Sum_probs=295.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCCccccccCCCCC----CCCCCcceecC------C
Q 013890 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEGT----ARLPGFHVCVG------S 72 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~------~ 72 (434)
+|++|||+|++|+.||..++++|.+ |+|||++... ....|.++|.++..... .....+..... .
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~---v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 78 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGAD---VTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARV 78 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCe---EEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCccccc
Confidence 5899999999999999999999987 9999998631 22335555555432100 00000000000 0
Q ss_pred C--------------CCCCCHhHHHHCCcEEEcCCeEEEEe--CCCCE--EEcCCCc--EEEeceEEEccCCCcccccCC
Q 013890 73 G--------------GERLLPEWYKEKGIELILSTEIVRAD--IASKT--LLSATGL--IFKYQILVIATGSTVLRLTDF 132 (434)
Q Consensus 73 ~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~--~~~~~--v~~~~~~--~~~~d~lilAtG~~~~~p~~~ 132 (434)
+ ......+.+++.+++++.+ .+..++ .+.++ |...++. ++.||+||||||++|..|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~- 156 (466)
T PRK07845 79 DLPAVNARVKALAAAQSADIRARLEREGVRVIAG-RGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPT- 156 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCC-
Confidence 0 0112335566789999998 555533 33444 4444554 79999999999999986653
Q ss_pred CCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHH
Q 013890 133 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYE 212 (434)
Q Consensus 133 ~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~ 212 (434)
++.+...+++..+..+... .+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.
T Consensus 157 --~~~~~~~v~~~~~~~~~~~--------~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~ 225 (466)
T PRK07845 157 --AEPDGERILTWRQLYDLDE--------LPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG-EDADAAEVLE 225 (466)
T ss_pred --CCCCCceEEeehhhhcccc--------cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC-CCHHHHHHHH
Confidence 3333455666554433221 3689999999999999999999999999999999999887 6999999999
Q ss_pred HHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCCCCCCC
Q 013890 213 GYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTS 288 (434)
Q Consensus 213 ~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~ 288 (434)
+.|+++||+++.++.+.+++.++++ ..+.+.+|+++++|.|++++|++|+++.+ +.++.. .+|+|.||+++||+
T Consensus 226 ~~L~~~gV~i~~~~~v~~v~~~~~~--~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts 303 (466)
T PRK07845 226 EVFARRGMTVLKRSRAESVERTGDG--VVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTS 303 (466)
T ss_pred HHHHHCCcEEEcCCEEEEEEEeCCE--EEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcccC
Confidence 9999999999999999999763333 35677788899999999999999999853 346666 56889999999999
Q ss_pred CCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCC----
Q 013890 289 ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG---- 364 (434)
Q Consensus 289 ~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~---- 364 (434)
+|||||+|||++.+ +++..|..||+.|+.|+++... .+..+..+|..+++.|+++.+ |+++.
T Consensus 304 ~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~--~~~~~~~~p~~vf~~p~~a~v--Glte~~a~~ 369 (466)
T PRK07845 304 VPGIYAAGDCTGVL----------PLASVAAMQGRIAMYHALGEAV--SPLRLKTVASNVFTRPEIATV--GVSQAAIDS 369 (466)
T ss_pred CCCEEEEeeccCCc----------cchhHHHHHHHHHHHHHcCCCC--CcCCCCCCCEEEeCCCcceee--cCCHHHHHh
Confidence 99999999999754 4678899999999999997531 124577889888877777766 66541
Q ss_pred --cEEE-----EcCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCcc
Q 013890 365 --DTVL-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFA 431 (434)
Q Consensus 365 --~~~~-----~~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~ 431 (434)
..+. +.+..++ ...++|+|+++ ++++|||+|++|++++|+ +.++.||++++|++||..+..+.++|+
T Consensus 370 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~ 449 (466)
T PRK07845 370 GEVPARTVMLPLATNPRAKMSGLRDGFVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQTFTVYPSLS 449 (466)
T ss_pred CCCceEEEEEecccCchhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCcCCCCCHH
Confidence 1111 1221111 34578999888 579999999999999887 999999999999999999998999988
Q ss_pred cc
Q 013890 432 SK 433 (434)
Q Consensus 432 ~~ 433 (434)
+.
T Consensus 450 e~ 451 (466)
T PRK07845 450 GS 451 (466)
T ss_pred HH
Confidence 64
No 17
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=6e-50 Score=389.63 Aligned_cols=393 Identities=17% Similarity=0.228 Sum_probs=289.1
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC---CCCCCCCccccccCCCCC----CCCCCcceecC--C---
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV---APYERPALSKAYLFPEGT----ARLPGFHVCVG--S--- 72 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~--- 72 (434)
+||++||||||+|.+||.. ..|.+ |+|||++.. +.+..|.++|.++..... ...+.+..... .
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~---V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 75 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKR---IAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRW 75 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCe---EEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCH
Confidence 4899999999999988865 35876 999999754 233346666654422211 00000000000 0
Q ss_pred ------------CCCC-CCHhH-HHHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCC
Q 013890 73 ------------GGER-LLPEW-YKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD 138 (434)
Q Consensus 73 ------------~~~~-~~~~~-~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~ 138 (434)
.... ....+ ++..+++++.+.... + +.++|.+.+++++.||++|||||++|..|+. ++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~-~--~~~~V~v~~g~~~~~d~lViATGs~p~~p~i---~g~~ 149 (451)
T PRK07846 76 PDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARF-I--GPKTLRTGDGEEITADQVVIAAGSRPVIPPV---IADS 149 (451)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEE-e--cCCEEEECCCCEEEeCEEEEcCCCCCCCCCC---CCcC
Confidence 0001 12233 566789999984433 3 5788888778889999999999999998884 5543
Q ss_pred CCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHc
Q 013890 139 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK 218 (434)
Q Consensus 139 ~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (434)
...++ +.+++..+.. .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+ +.
T Consensus 150 ~~~~~---~~~~~~~l~~-----~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~~~~l~~l~-~~ 219 (451)
T PRK07846 150 GVRYH---TSDTIMRLPE-----LPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH-LDDDISERFTELA-SK 219 (451)
T ss_pred CccEE---chHHHhhhhh-----cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHHH-hc
Confidence 33333 3344433321 4789999999999999999999999999999999998875 7999988887655 56
Q ss_pred CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhhh---ccccc-cCCcEEeCCCCCCCCCceEE
Q 013890 219 GIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFK---GQVAE-NKGGIETDDFFKTSADDVYA 294 (434)
Q Consensus 219 gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~---~~~~~-~~g~i~vd~~~~t~~~~iya 294 (434)
||++++++++.+++.. ++. ..+.+.+|+++++|.|++|+|++|+++++. .++.. ++|+|.||+++||++|+|||
T Consensus 220 ~v~i~~~~~v~~i~~~-~~~-v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA 297 (451)
T PRK07846 220 RWDVRLGRNVVGVSQD-GSG-VTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFA 297 (451)
T ss_pred CeEEEeCCEEEEEEEc-CCE-EEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcccCCCCEEE
Confidence 8999999999999863 222 356777888999999999999999998753 35666 57889999999999999999
Q ss_pred ecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCc------EE-
Q 013890 295 VGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD------TV- 367 (434)
Q Consensus 295 ~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~------~~- 367 (434)
+|||++.+ ++...|.+||+++++||++.... ....+..+|+.+++.|+++.+ |+++.+ .+
T Consensus 298 ~GD~~~~~----------~l~~~A~~~g~~~a~ni~~~~~~-~~~~~~~~p~~if~~p~ia~v--Glte~~a~~~g~~~~ 364 (451)
T PRK07846 298 LGDVSSPY----------QLKHVANHEARVVQHNLLHPDDL-IASDHRFVPAAVFTHPQIASV--GLTENEARAAGLDIT 364 (451)
T ss_pred EeecCCCc----------cChhHHHHHHHHHHHHHcCCCCc-cccCCCCCCeEEECCCCcEeE--eCCHHHHHhcCCCEE
Confidence 99999864 34567889999999999865221 125677899998887777666 766521 11
Q ss_pred ----EEcCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhh-ccCCCcccc
Q 013890 368 ----LFGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLK-NEGLSFASK 433 (434)
Q Consensus 368 ----~~~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~ 433 (434)
.+.+.... ...++|+|+++ ++++|||+|++|++++|+ +.++.||++++|++||..+. .+.+++++.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~ 441 (451)
T PRK07846 365 VKVQNYGDVAYGWAMEDTTGFVKLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMARGQYWIHPALPEV 441 (451)
T ss_pred EEEEecCcchhhhhCCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCCccCCcHHHH
Confidence 11221111 24578999888 579999999999999887 99999999999999998865 588888764
No 18
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=2.8e-48 Score=398.60 Aligned_cols=388 Identities=20% Similarity=0.335 Sum_probs=306.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCC-CCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 6 FKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~-~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.+|||||+|+||+.+|..|++++. +..+|+||++++..+|.++.++..+.. .....+ .....+++++
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~-~~~~~l-----------~~~~~~~~~~ 71 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSH-HTAEEL-----------SLVREGFYEK 71 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcC-CCHHHc-----------cCCCHHHHHh
Confidence 589999999999999999987642 245699999999999998777654322 111111 2345688889
Q ss_pred CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCC
Q 013890 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNG 164 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~ 164 (434)
.+++++.++.|+.++++.+.|.+.++..+.||+||||||+.|+.|+ ++|.+..+++.+++++++..+.+.+. .++
T Consensus 72 ~gI~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~---ipG~~~~~v~~~rt~~d~~~l~~~~~--~~k 146 (847)
T PRK14989 72 HGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPP---IKGSETQDCFVYRTIEDLNAIEACAR--RSK 146 (847)
T ss_pred CCCEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcCCCC---CCCCCCCCeEEECCHHHHHHHHHHHh--cCC
Confidence 9999999989999999999998888889999999999999999888 57777778999999999998877765 478
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe
Q 013890 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL 244 (434)
Q Consensus 165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~ 244 (434)
+++|||+|++|+|+|..|.+.|.+|+++++.+++++..++++..+.+.+.+++.||++++++.++++..++++....+.+
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~ 226 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRF 226 (847)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEE
Confidence 99999999999999999999999999999999988866899999999999999999999999999997633445567888
Q ss_pred CCCcEEEcCEEEEccCCccChhhhh-ccccc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHH
Q 013890 245 KDGRTLEADIVVVGVGGRPLISLFK-GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSA 322 (434)
Q Consensus 245 ~~g~~i~~d~vv~a~G~~p~~~~~~-~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g 322 (434)
++|+++++|.|++|+|++|++++++ .++.. .+|+|.||+++||++|+|||+|||+......+ ..+..|..||
T Consensus 227 ~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l~Ts~p~IYAiGD~a~~~~~~~------gl~~~a~~~a 300 (847)
T PRK14989 227 ADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVF------GLVAPGYKMA 300 (847)
T ss_pred CCCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECCCCcCCCCCEEEeecceeEcCccc------ccHHHHHHHH
Confidence 9999999999999999999999875 46666 56899999999999999999999998765422 4678899999
Q ss_pred HHHHHHHhccCCCCcccCCCC-CCeeEEeecCcceEEeecCCCc-----EEEEcCCCccccCCcEEEEEE--eCCEEEEE
Q 013890 323 EQAVKTIMATEGGKTVTGYDY-LPYFYSRAFDLSWQFYGDNVGD-----TVLFGDNDLASATHKFGTYWI--KDGKVVGV 394 (434)
Q Consensus 323 ~~aa~~i~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~G~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~ilG~ 394 (434)
++||.||++.. ..|.. ......+.+++.+...|...+. ...+-+ .....|.|+++ ++++|||+
T Consensus 301 ~vaa~~i~g~~-----~~~~g~~~~~~lk~~G~~v~s~G~~~~~~~~~~~~~~~~----~~~~~y~Klv~~~~~~~LlGa 371 (847)
T PRK14989 301 QVAVDHLLGSE-----NAFEGADLSAKLKLLGVDVGGIGDAHGRTPGARSYVYLD----ESKEIYKRLIVSEDNKTLLGA 371 (847)
T ss_pred HHHHHHhcCCC-----cCCCCcccceEEEECCcceEecccccCCCCCceeEEEEc----CCCCEEEEEEEECCCCEEEEE
Confidence 99999998754 22332 2223455677766666643221 111211 12467889888 46799999
Q ss_pred EEecCChHHHHHHHHHHHcCCCCCC-hhhhhcc
Q 013890 395 FLESGTPEENKAIAKVARVQPSVES-LDVLKNE 426 (434)
Q Consensus 395 ~~~g~~~~~~~~~~~~i~~~~~~~~-~~~~~~~ 426 (434)
+++|+. ++...+...+.+++++.+ .+.|..+
T Consensus 372 ~lvGd~-~~~~~l~~~~~~~~~l~~~~~~l~~~ 403 (847)
T PRK14989 372 VLVGDT-SDYGNLLQLVLNAIELPENPDSLILP 403 (847)
T ss_pred EEECCH-HHHHHHHHHHHcCCCCccchhheecC
Confidence 999954 445445555556777653 4455444
No 19
>PLN02546 glutathione reductase
Probab=100.00 E-value=4.3e-50 Score=395.53 Aligned_cols=393 Identities=20% Similarity=0.235 Sum_probs=292.8
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC----------C---CCCCCCCCccccccCCCCC----CCCCCcc
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE----------A---VAPYERPALSKAYLFPEGT----ARLPGFH 67 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~----------~---~~~~~~~~~~~~~~~~~~~----~~~~~~~ 67 (434)
+|||+|||+|++|+.||..++++|.+ |+|+|+. . .+....|.++|.++..... .....+.
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~---V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g 155 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGAS---AAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFG 155 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcC
Confidence 58999999999999999999999987 9999962 1 1223335555555432211 0111111
Q ss_pred eecCC----C--------------CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccc
Q 013890 68 VCVGS----G--------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 68 ~~~~~----~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p 129 (434)
..... + ....+...+++.+++++.+ ++..+++ ++|.+ +++.+.||+||||||++|..|
T Consensus 156 ~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G-~a~~vd~--~~V~v-~G~~~~~D~LVIATGs~p~~P 231 (558)
T PLN02546 156 WKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEG-RGKIVDP--HTVDV-DGKLYTARNILIAVGGRPFIP 231 (558)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEccC--CEEEE-CCEEEECCEEEEeCCCCCCCC
Confidence 11000 0 0112334455679999997 6666654 45655 567899999999999999988
Q ss_pred cCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHH
Q 013890 130 TDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAA 209 (434)
Q Consensus 130 ~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~ 209 (434)
+ ++|.+ .++ +..++..+. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+
T Consensus 232 ~---IpG~~--~v~---~~~~~l~~~-----~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~-~d~~~~~ 297 (558)
T PLN02546 232 D---IPGIE--HAI---DSDAALDLP-----SKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG-FDEEVRD 297 (558)
T ss_pred C---CCChh--hcc---CHHHHHhcc-----ccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc-cCHHHHH
Confidence 7 45542 222 333333221 14789999999999999999999999999999999988875 7999999
Q ss_pred HHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCCCC
Q 013890 210 FYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFF 285 (434)
Q Consensus 210 ~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~ 285 (434)
.+.+.++++||++++++.+.++...+++.+ .+.+.+++...+|.|++++|++|+++++ ..++.. .+|+|.||+++
T Consensus 298 ~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l 376 (558)
T PLN02546 298 FVAEQMSLRGIEFHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYS 376 (558)
T ss_pred HHHHHHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCc
Confidence 999999999999999999999976434433 4556666555689999999999999853 345666 56889999999
Q ss_pred CCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCc
Q 013890 286 KTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD 365 (434)
Q Consensus 286 ~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~ 365 (434)
||++|+|||+|||++.+ .++..|..||+.+|.||++.... ...|..+|+.+++.|+++.+ |+++.+
T Consensus 377 ~Ts~p~IYAaGDv~~~~----------~l~~~A~~~g~~~a~~i~g~~~~--~~~~~~vp~~vft~Peia~V--Glte~e 442 (558)
T PLN02546 377 RTSVPSIWAVGDVTDRI----------NLTPVALMEGGALAKTLFGNEPT--KPDYRAVPSAVFSQPPIGQV--GLTEEQ 442 (558)
T ss_pred eeCCCCEEEeeccCCCc----------ccHHHHHHHHHHHHHHHcCCCCC--cCCCCCCCEEEeCCchHhhc--cCCHHH
Confidence 99999999999999754 45678999999999999975422 25678899988888887766 766532
Q ss_pred E------EEEcC--CCc------cccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCC
Q 013890 366 T------VLFGD--NDL------ASATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGL 428 (434)
Q Consensus 366 ~------~~~~~--~~~------~~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~ 428 (434)
. +.... ... ....++|+|+++ ++++|||+|++|++++|+ +.++.||++++|++||..+..+.+
T Consensus 443 A~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ILGa~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hP 522 (558)
T PLN02546 443 AIEEYGDVDVFTANFRPLKATLSGLPDRVFMKLIVCAKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATVGIHP 522 (558)
T ss_pred HHHcCCCeEEEEEecccchhhhhCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCC
Confidence 1 11111 110 013567999887 589999999999999887 999999999999999999999999
Q ss_pred Ccccc
Q 013890 429 SFASK 433 (434)
Q Consensus 429 ~~~~~ 433 (434)
+++|.
T Consensus 523 T~~E~ 527 (558)
T PLN02546 523 TAAEE 527 (558)
T ss_pred ChHHH
Confidence 98864
No 20
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=4e-50 Score=392.04 Aligned_cols=396 Identities=17% Similarity=0.210 Sum_probs=287.5
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC-CC----CCCCCccccccCCCCCCCCCCcceecCC-C----
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV-AP----YERPALSKAYLFPEGTARLPGFHVCVGS-G---- 73 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---- 73 (434)
+.|||+|||||+||++||..|+++|++ |+|||+.+. .. ...|.+++.++..... ...|...... .
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~---V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~--~~~~~~~~~~~~~~~~ 76 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWR---VALIEQSNAMYGGTCINIGCIPTKTLVHDAQQ--HTDFVRAIQRKNEVVN 76 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCe---EEEEcCCCCccceeEeeccccchHHHHHHhcc--CCCHHHHHHHHHHHHH
Confidence 469999999999999999999999987 999999753 11 1112223332222110 0011000000 0
Q ss_pred -CCC-CCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCCc-EEEeceEEEccCCCcccccCCCCCCCC-CCCEEEEeCHH
Q 013890 74 -GER-LLPEWYKEKGIELILSTEIVRADIASKTLLSATGL-IFKYQILVIATGSTVLRLTDFGVEGAD-AKNIFYLREID 149 (434)
Q Consensus 74 -~~~-~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~-~~~~d~lilAtG~~~~~p~~~~i~g~~-~~~v~~~~~~~ 149 (434)
... ...+..+..+++++.+ .+..++.....|...++. ++.||+||||||++|..|+. +|.+ .+++++...+.
T Consensus 77 ~~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i---~G~~~~~~v~~~~~~~ 152 (441)
T PRK08010 77 FLRNKNFHNLADMPNIDVIDG-QAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPI---PGITTTPGVYDSTGLL 152 (441)
T ss_pred HHHHhHHHHHhhcCCcEEEEE-EEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCC---CCccCCCCEEChhHhh
Confidence 000 0112222348999887 677776655556555664 69999999999999988884 5542 34565433222
Q ss_pred HHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEE
Q 013890 150 DADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAV 229 (434)
Q Consensus 150 ~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~ 229 (434)
.+ . ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++.||++++++.+.
T Consensus 153 ---~~----~-~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~gV~v~~~~~v~ 223 (441)
T PRK08010 153 ---NL----K-ELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR-EDRDIADNIATILRDQGVDIILNAHVE 223 (441)
T ss_pred ---cc----c-ccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC-cCHHHHHHHHHHHHhCCCEEEeCCEEE
Confidence 11 1 14789999999999999999999999999999999988886 689999999999999999999999999
Q ss_pred EEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCCCCCCCCCceEEecccccccccc
Q 013890 230 GFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKL 305 (434)
Q Consensus 230 ~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~ 305 (434)
+++.+ ++. ..+.++++ ++++|.|++|+|++|+++++ ..++.. .+|+|.||+++||++|||||+|||++.+.
T Consensus 224 ~i~~~-~~~-v~v~~~~g-~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~-- 298 (441)
T PRK08010 224 RISHH-ENQ-VQVHSEHA-QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTGGLQ-- 298 (441)
T ss_pred EEEEc-CCE-EEEEEcCC-eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc--
Confidence 99863 332 34555555 68999999999999999754 335665 56889999999999999999999998653
Q ss_pred cCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCc------EE---E--EcCCCc
Q 013890 306 YREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD------TV---L--FGDNDL 374 (434)
Q Consensus 306 ~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~------~~---~--~~~~~~ 374 (434)
....|..+|+.++.||++.... ....+..+|+.++..|+++.+ |+++.+ .+ . +.+...
T Consensus 299 --------~~~~a~~~~~~~~~~~~g~~~~-~~~~~~~~p~~~~~~p~ia~v--Glte~~a~~~g~~~~~~~~~~~~~~~ 367 (441)
T PRK08010 299 --------FTYISLDDYRIVRDELLGEGKR-STDDRKNVPYSVFMTPPLSRV--GMTEEQARESGADIQVVTLPVAAIPR 367 (441)
T ss_pred --------chhHHHHHHHHHHHHHcCCCCc-ccCccCCCCEEEECCCCceee--eCCHHHHHHcCCCeEEEEEecCcChh
Confidence 4556778999999999864211 124566788887777777666 766521 11 1 122222
Q ss_pred c---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890 375 A---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK 433 (434)
Q Consensus 375 ~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 433 (434)
+ ....+|+|+++ ++++|||+|++|++++++ +.++.+|++++|++||.....+.++|++.
T Consensus 368 ~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~ 432 (441)
T PRK08010 368 ARVMNDTRGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSES 432 (441)
T ss_pred hhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhccccCCchHHH
Confidence 1 23567899887 589999999999999887 99999999999999999988899998864
No 21
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.3e-49 Score=391.14 Aligned_cols=397 Identities=25% Similarity=0.335 Sum_probs=287.8
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCCccccccCCCCC----CCCCCcceecCC---C
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGT----ARLPGFHVCVGS---G 73 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---~ 73 (434)
..||++||||||||++||..|+++|++ |+|+|++...+ ...|.+++.++..... ...+.+...... .
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~---V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLK---VAIVEKEKLGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGID 79 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCc---EEEEeccccccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccC
Confidence 469999999999999999999999987 99999986321 2234445544322211 000111000000 0
Q ss_pred --------------CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCC-CcEEEeceEEEccCCCcccccCCCCCCCC
Q 013890 74 --------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT-GLIFKYQILVIATGSTVLRLTDFGVEGAD 138 (434)
Q Consensus 74 --------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~-~~~~~~d~lilAtG~~~~~p~~~~i~g~~ 138 (434)
....+...+++.+++++.+ .+..++....++...+ +.++.||+||||||++|..|+. ++ ..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~pg--~~-~~ 155 (462)
T PRK06416 80 FKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRG-EAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRELPG--IE-ID 155 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCCCC--CC-CC
Confidence 0011233455679999998 5666655444444323 3679999999999999975542 22 11
Q ss_pred CCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHc
Q 013890 139 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK 218 (434)
Q Consensus 139 ~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (434)
...+++ ..++..+. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.
T Consensus 156 ~~~v~~---~~~~~~~~-----~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~ 226 (462)
T PRK06416 156 GRVIWT---SDEALNLD-----EVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG-EDKEISKLAERALKKR 226 (462)
T ss_pred CCeEEc---chHhhCcc-----ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc-CCHHHHHHHHHHHHHc
Confidence 223443 33333321 14689999999999999999999999999999999998886 7999999999999999
Q ss_pred CcEEEcCCeEEEEEecCCCcEEEEEeCCC---cEEEcCEEEEccCCccChhhh---hccccccCCcEEeCCCCCCCCCce
Q 013890 219 GIKIIKGTVAVGFTTNADGEVNEVKLKDG---RTLEADIVVVGVGGRPLISLF---KGQVAENKGGIETDDFFKTSADDV 292 (434)
Q Consensus 219 gV~~~~~~~v~~i~~~~~g~~~~v~~~~g---~~i~~d~vv~a~G~~p~~~~~---~~~~~~~~g~i~vd~~~~t~~~~i 292 (434)
||++++++.+.+++.+++ . ..+.+.++ +++++|.||+|+|++|+++++ ..++..++|+|.||+++||++|+|
T Consensus 227 gV~i~~~~~V~~i~~~~~-~-v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i~vd~~~~t~~~~V 304 (462)
T PRK06416 227 GIKIKTGAKAKKVEQTDD-G-VTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFIEVDEQLRTNVPNI 304 (462)
T ss_pred CCEEEeCCEEEEEEEeCC-E-EEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeecCCEEeECCCCccCCCCE
Confidence 999999999999987332 2 34555555 679999999999999999865 345555678899999999999999
Q ss_pred EEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCcE------
Q 013890 293 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT------ 366 (434)
Q Consensus 293 ya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~------ 366 (434)
||+|||+..+ ..+..|..||+.+|.||++... ..++..+|.+.+..|++ ..+|.++.+.
T Consensus 305 yAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~---~~~~~~~~~~~~~~~~~--a~vG~te~~a~~~g~~ 369 (462)
T PRK06416 305 YAIGDIVGGP----------MLAHKASAEGIIAAEAIAGNPH---PIDYRGIPAVTYTHPEV--ASVGLTEAKAKEEGFD 369 (462)
T ss_pred EEeeecCCCc----------chHHHHHHHHHHHHHHHcCCCC---CCCCCCCCeEEECCCce--EEEeCCHHHHHhcCCC
Confidence 9999999743 4678899999999999997432 23455677766655554 4557765221
Q ss_pred EE-----EcCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890 367 VL-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK 433 (434)
Q Consensus 367 ~~-----~~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 433 (434)
+. +....+. ...++++|+++ ++++|||+|++|++++++ +.++.||++++|++||..+..+.++|++.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~ 447 (462)
T PRK06416 370 VKVVKFPFAGNGKALALGETDGFVKLIFDKKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTIHPHPTLSEA 447 (462)
T ss_pred eEEEEEecCcChHhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHH
Confidence 11 1111111 24577899887 589999999999999887 99999999999999999998899998864
No 22
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=7.5e-50 Score=392.90 Aligned_cols=402 Identities=23% Similarity=0.284 Sum_probs=288.7
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCCccccccCCCCC----CCCCCcceecCC--
Q 013890 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEGT----ARLPGFHVCVGS-- 72 (434)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-- 72 (434)
|.+.||++||||||||++||..|+++|++ |+|||++... ....|.+++.++..... .....+......
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~---v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~ 77 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLK---TALVEKGKLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPA 77 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCe---EEEEEccCCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCc
Confidence 55679999999999999999999999987 9999997431 12224445444322110 000000000000
Q ss_pred -C--------------CCCCCHhHHHHCCcEEEcCCeEEEEeCC-------CCEEEcCCC--cEEEeceEEEccCCCccc
Q 013890 73 -G--------------GERLLPEWYKEKGIELILSTEIVRADIA-------SKTLLSATG--LIFKYQILVIATGSTVLR 128 (434)
Q Consensus 73 -~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~-------~~~v~~~~~--~~~~~d~lilAtG~~~~~ 128 (434)
. ......+.+++.+++++.+ .+..++.. ...|...++ .++.||+||||||++|..
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~ 156 (472)
T PRK05976 78 LDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVE 156 (472)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCC
Confidence 0 0011224456679999998 67777766 334555565 579999999999999975
Q ss_pred ccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHH
Q 013890 129 LTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIA 208 (434)
Q Consensus 129 p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~ 208 (434)
++. ++ .+...+++ ..++..+. ..+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.
T Consensus 157 ~p~--~~-~~~~~~~~---~~~~~~~~-----~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~-~~~~~~ 224 (472)
T PRK05976 157 LPG--LP-FDGEYVIS---SDEALSLE-----TLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT-EDAELS 224 (472)
T ss_pred CCC--CC-CCCceEEc---chHhhCcc-----ccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc-CCHHHH
Confidence 542 22 12222333 23333221 14789999999999999999999999999999999998886 699999
Q ss_pred HHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEEcCEEEEccCCccChhhhh---ccccccCCcEEeCC
Q 013890 209 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG--RTLEADIVVVGVGGRPLISLFK---GQVAENKGGIETDD 283 (434)
Q Consensus 209 ~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g--~~i~~d~vv~a~G~~p~~~~~~---~~~~~~~g~i~vd~ 283 (434)
+.+.+.+++.||++++++.+.+++...++.+..+.+.+| +++++|.+++|+|++|+++.+. .++..++|++.||+
T Consensus 225 ~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd~ 304 (472)
T PRK05976 225 KEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDD 304 (472)
T ss_pred HHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEECC
Confidence 999999999999999999999997421333434445566 3699999999999999987542 23334568899999
Q ss_pred CCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCC
Q 013890 284 FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV 363 (434)
Q Consensus 284 ~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~ 363 (434)
++||+.|+|||+|||+..+ +.+..|..+|+.|+.||.+.... ...+..+|...+..|+++ .+|+++
T Consensus 305 ~l~ts~~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~--~~~~~~~p~~~~~~p~~a--~vG~te 370 (472)
T PRK05976 305 FCQTKERHIYAIGDVIGEP----------QLAHVAMAEGEMAAEHIAGKKPR--PFDYAAIPACCYTDPEVA--SVGLTE 370 (472)
T ss_pred CcccCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCC--CCCCCCCCEEEECcCceE--EEeCCH
Confidence 9999999999999999643 45778999999999999865321 244556777666555554 447665
Q ss_pred Cc------EEEE-----cCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhcc
Q 013890 364 GD------TVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNE 426 (434)
Q Consensus 364 ~~------~~~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~ 426 (434)
.+ .+.. ....++ ...++|+|+++ ++++|||+|++|++++++ +.++.||++++|++||..+..+
T Consensus 371 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~ 450 (472)
T PRK05976 371 EEAKEAGYDVKVGKFPFAANGKALTYGESDGFVKVVADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTIHP 450 (472)
T ss_pred HHHHHcCCCEEEEEEECCcchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccc
Confidence 21 1111 111111 34678899888 579999999999999887 9999999999999999999999
Q ss_pred CCCcccc
Q 013890 427 GLSFASK 433 (434)
Q Consensus 427 ~~~~~~~ 433 (434)
.++|++.
T Consensus 451 hPt~~e~ 457 (472)
T PRK05976 451 HPTLSEA 457 (472)
T ss_pred CCChHHH
Confidence 9999864
No 23
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.7e-49 Score=388.79 Aligned_cols=397 Identities=22% Similarity=0.268 Sum_probs=284.4
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC----CCCCCCCccccccCCCCCC------CCCCcceec--CC
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV----APYERPALSKAYLFPEGTA------RLPGFHVCV--GS 72 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~----~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--~~ 72 (434)
+|||+||||||||++||..++++|++ |+|||+... +....|.+++.++...... ....+.... ..
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~---V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~ 79 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLK---VACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTL 79 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCcc
Confidence 59999999999999999999999987 999997432 2233355566544332210 011111000 00
Q ss_pred CCC--------------CCCHhHHHHCCcEEEcCCeEEEEeCCCC-EEEcCCCc--EEEeceEEEccCCCcccccCCCCC
Q 013890 73 GGE--------------RLLPEWYKEKGIELILSTEIVRADIASK-TLLSATGL--IFKYQILVIATGSTVLRLTDFGVE 135 (434)
Q Consensus 73 ~~~--------------~~~~~~~~~~~v~~~~~~~v~~i~~~~~-~v~~~~~~--~~~~d~lilAtG~~~~~p~~~~i~ 135 (434)
... .....++++.+++++.+. . .++...+ .+...++. ++.||+||||||++|.. ++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a-~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~-----ip 152 (466)
T PRK06115 80 NLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGW-G-RLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTP-----LP 152 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-E-EEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCC-----CC
Confidence 000 011233445689998874 2 3333222 23334553 69999999999999853 23
Q ss_pred CCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHH
Q 013890 136 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY 215 (434)
Q Consensus 136 g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l 215 (434)
|....+...+ +..++..+ ...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+
T Consensus 153 g~~~~~~~~~-~~~~~~~~-----~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~-~d~~~~~~l~~~l 225 (466)
T PRK06115 153 GVTIDNQRII-DSTGALSL-----PEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG-TDTETAKTLQKAL 225 (466)
T ss_pred CCCCCCCeEE-CHHHHhCC-----ccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-CCHHHHHHHHHHH
Confidence 3322232222 22332221 125799999999999999999999999999999999999886 7999999999999
Q ss_pred HHcCcEEEcCCeEEEEEecCCCcEEEEEe-C--CCcEEEcCEEEEccCCccChhhh---hccccccCCcEEeCCCCCCCC
Q 013890 216 ANKGIKIIKGTVAVGFTTNADGEVNEVKL-K--DGRTLEADIVVVGVGGRPLISLF---KGQVAENKGGIETDDFFKTSA 289 (434)
Q Consensus 216 ~~~gV~~~~~~~v~~i~~~~~g~~~~v~~-~--~g~~i~~d~vv~a~G~~p~~~~~---~~~~~~~~g~i~vd~~~~t~~ 289 (434)
++.||++++++.+.+++..+++....+.. . +++++++|.|++|+|++|+++.+ ..++..+++++.||+++||++
T Consensus 226 ~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~vd~~~~Ts~ 305 (466)
T PRK06115 226 TKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLANDHHRTSV 305 (466)
T ss_pred HhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCCEEECCCeecCC
Confidence 99999999999999998633332222322 1 23579999999999999999854 224555445588999999999
Q ss_pred CceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCc----
Q 013890 290 DDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD---- 365 (434)
Q Consensus 290 ~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~---- 365 (434)
|+|||+|||++.+ .+...|.+||+++++||++... ..++..+|.++++.|+++.+ |+++.+
T Consensus 306 ~~IyA~GD~~~~~----------~la~~A~~~g~~aa~~i~~~~~---~~~~~~~p~~~~t~p~ia~v--Glte~~a~~~ 370 (466)
T PRK06115 306 PGVWVIGDVTSGP----------MLAHKAEDEAVACIERIAGKAG---EVNYGLIPGVIYTRPEVATV--GKTEEQLKAE 370 (466)
T ss_pred CCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHcCCCC---CCCCCCCCeEEECCcccEEe--eCCHHHHHHC
Confidence 9999999999754 4577899999999999987532 25677899999888887766 766521
Q ss_pred --EEEE-----cCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013890 366 --TVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 366 --~~~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 432 (434)
.+.. ....++ ...++|+|+++ ++++|||+|++|++++|+ +.++.||++++|++||..+..+.++++|
T Consensus 371 g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~dl~~~~~~hPt~~e 450 (466)
T PRK06115 371 GRAYKVGKFPFTANSRAKINHETEGFAKILADARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRSE 450 (466)
T ss_pred CCCEEEEEEecccChhhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCccCCCChHH
Confidence 1111 222211 23578999887 579999999999999987 9999999999999999999999999886
Q ss_pred c
Q 013890 433 K 433 (434)
Q Consensus 433 ~ 433 (434)
.
T Consensus 451 ~ 451 (466)
T PRK06115 451 A 451 (466)
T ss_pred H
Confidence 4
No 24
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2e-49 Score=389.33 Aligned_cols=397 Identities=24% Similarity=0.256 Sum_probs=281.4
Q ss_pred CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCCccccccCCCCCC-----CCCCcceecCC
Q 013890 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEGTA-----RLPGFHVCVGS 72 (434)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 72 (434)
|| .+|||+||||||||++||..|+++|.+ |+|||++... ....|.+++.++...... ....+... ..
T Consensus 1 ~~-~~~DvvIIG~GpaG~~AA~~aa~~G~~---V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~-~~ 75 (466)
T PRK07818 1 MM-THYDVVVLGAGPGGYVAAIRAAQLGLK---TAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGIS-GE 75 (466)
T ss_pred CC-CcCCEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCC-cC
Confidence 55 469999999999999999999999987 9999997431 112233444433221100 00000000 00
Q ss_pred CCC-----------------CCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEc--CCC--cEEEeceEEEccCCCcccccC
Q 013890 73 GGE-----------------RLLPEWYKEKGIELILSTEIVRADIASKTLLS--ATG--LIFKYQILVIATGSTVLRLTD 131 (434)
Q Consensus 73 ~~~-----------------~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~--~~~--~~~~~d~lilAtG~~~~~p~~ 131 (434)
... ......++..+++.+.+. ..- .+.+++.+ .++ .++.||+||||||++|..|+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~-~~~--~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~pg 152 (466)
T PRK07818 76 VTFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGY-GTF--TDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLPG 152 (466)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEE--cCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCCCC
Confidence 000 001111223467776652 221 23444433 344 468999999999999976432
Q ss_pred CCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHH
Q 013890 132 FGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFY 211 (434)
Q Consensus 132 ~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~ 211 (434)
++. ...+++.. +... ....+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+
T Consensus 153 --~~~--~~~v~~~~---~~~~-----~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~l 219 (466)
T PRK07818 153 --TSL--SENVVTYE---EQIL-----SRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN-EDAEVSKEI 219 (466)
T ss_pred --CCC--CCcEEchH---HHhc-----cccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc-cCHHHHHHH
Confidence 211 13344332 2111 1124789999999999999999999999999999999999887 699999999
Q ss_pred HHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC--CC--cEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCC
Q 013890 212 EGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK--DG--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDD 283 (434)
Q Consensus 212 ~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~--~g--~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~ 283 (434)
.+.++++||+++++++|++++.+ ++ ...+.+. +| +++++|.|++|+|++|+++.+ ..++.. ++|+|.||+
T Consensus 220 ~~~l~~~gV~i~~~~~v~~i~~~-~~-~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~ 297 (466)
T PRK07818 220 AKQYKKLGVKILTGTKVESIDDN-GS-KVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDD 297 (466)
T ss_pred HHHHHHCCCEEEECCEEEEEEEe-CC-eEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCC
Confidence 99999999999999999999862 22 2334443 56 379999999999999999853 445665 568899999
Q ss_pred CCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCC
Q 013890 284 FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV 363 (434)
Q Consensus 284 ~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~ 363 (434)
++||++|+|||+|||+..+ +++..|..||+.||.||++.... ....+..+|..+++.|+++.+ |+++
T Consensus 298 ~~~Ts~p~IyAiGD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~-~~~~~~~~p~~~~~~p~~a~v--Glte 364 (466)
T PRK07818 298 YMRTNVPHIYAIGDVTAKL----------QLAHVAEAQGVVAAETIAGAETL-ELGDYRMMPRATFCQPQVASF--GLTE 364 (466)
T ss_pred CcccCCCCEEEEeecCCCc----------ccHhHHHHHHHHHHHHHcCCCCC-ccCccCCCCeEEECCCCeEEE--eCCH
Confidence 9999999999999999743 56788999999999999865321 112677889888877777666 7665
Q ss_pred Cc------EEEE-----cCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhcc
Q 013890 364 GD------TVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNE 426 (434)
Q Consensus 364 ~~------~~~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~ 426 (434)
.+ .+.. .+..++ ....+|+|+++ ++++|||+|++|++++|+ +.++.||++++|++||....-+
T Consensus 365 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~ 444 (466)
T PRK07818 365 EQAREEGYDVKVAKFPFTANGKAHGLGDPTGFVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNVHT 444 (466)
T ss_pred HHHHhCCCcEEEEEEECCccchhhhcCCCCeEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCccC
Confidence 21 1111 111111 24578999887 579999999999999987 9999999999999999999989
Q ss_pred CCCcccc
Q 013890 427 GLSFASK 433 (434)
Q Consensus 427 ~~~~~~~ 433 (434)
.++|+|.
T Consensus 445 hPt~~e~ 451 (466)
T PRK07818 445 HPTLSEA 451 (466)
T ss_pred CCchHHH
Confidence 9999874
No 25
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=1.1e-49 Score=391.48 Aligned_cols=393 Identities=22% Similarity=0.245 Sum_probs=286.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCCccccccCCCCCCCC---CCcceecCC-------
Q 013890 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGTARL---PGFHVCVGS------- 72 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~~------- 72 (434)
|||+||||||||++||..++++|++ |+|||++...+ ...|.+++.++........ ..+......
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~---v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 77 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGAS---VAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGE 77 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCcccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHH
Confidence 7999999999999999999999987 99999975321 1123344443321100000 000000000
Q ss_pred ----------CC-CCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCC-cEEEeceEEEccCCCcccccCCCCCCCCCC
Q 013890 73 ----------GG-ERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGSTVLRLTDFGVEGADAK 140 (434)
Q Consensus 73 ----------~~-~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~lilAtG~~~~~p~~~~i~g~~~~ 140 (434)
.. .......+++.+++++.+ .+..+ +.++|.+.++ ..+.||+||||||++|..|+ ++|.+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~~--~~~~v~v~~g~~~~~~~~lIiATGs~p~~p~---i~G~~~~ 151 (463)
T TIGR02053 78 LLEGKREVVEELRHEKYEDVLSSYGVDYLRG-RARFK--DPKTVKVDLGREVRGAKRFLIATGARPAIPP---IPGLKEA 151 (463)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhCCcEEEEE-EEEEc--cCCEEEEcCCeEEEEeCEEEEcCCCCCCCCC---CCCcccC
Confidence 00 011335567789999987 44433 4677777665 46899999999999998887 4665444
Q ss_pred CEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCc
Q 013890 141 NIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGI 220 (434)
Q Consensus 141 ~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV 220 (434)
++++..+ +..+. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++...+.+.+++.||
T Consensus 152 ~~~~~~~---~~~~~-----~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV 222 (463)
T TIGR02053 152 GYLTSEE---ALALD-----RIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR-EEPEISAAVEEALAEEGI 222 (463)
T ss_pred ceECchh---hhCcc-----cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc-cCHHHHHHHHHHHHHcCC
Confidence 5554332 22111 13689999999999999999999999999999999998886 799999999999999999
Q ss_pred EEEcCCeEEEEEecCCCcEEEEEeC---CCcEEEcCEEEEccCCccChh-h-h-hccccc-cCCcEEeCCCCCCCCCceE
Q 013890 221 KIIKGTVAVGFTTNADGEVNEVKLK---DGRTLEADIVVVGVGGRPLIS-L-F-KGQVAE-NKGGIETDDFFKTSADDVY 293 (434)
Q Consensus 221 ~~~~~~~v~~i~~~~~g~~~~v~~~---~g~~i~~d~vv~a~G~~p~~~-~-~-~~~~~~-~~g~i~vd~~~~t~~~~iy 293 (434)
++++++.|++++.++++ ..+.+. +++++++|.|++|+|++|+++ + + ..++.. ++|+|.||+++||++|+||
T Consensus 223 ~i~~~~~V~~i~~~~~~--~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~Vy 300 (463)
T TIGR02053 223 EVVTSAQVKAVSVRGGG--KIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIY 300 (463)
T ss_pred EEEcCcEEEEEEEcCCE--EEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccCCCCCEE
Confidence 99999999999873222 334432 235799999999999999998 3 2 335555 5688999999999999999
Q ss_pred EecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCcE------E
Q 013890 294 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT------V 367 (434)
Q Consensus 294 a~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~------~ 367 (434)
|+|||+..+ ..+..|..||++||.||++.... ..++..+|.+.+..|+++.+ |+++.+. +
T Consensus 301 AiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~~--~~~~~~~p~~~~~~p~~a~v--Glte~~a~~~g~~~ 366 (463)
T TIGR02053 301 AAGDVTGGL----------QLEYVAAKEGVVAAENALGGANA--KLDLLVIPRVVFTDPAVASV--GLTEAEAQKAGIEC 366 (463)
T ss_pred EeeecCCCc----------ccHhHHHHHHHHHHHHhcCCCCC--ccCcCCCCeEEeccCceEEE--eCCHHHHHhcCCCe
Confidence 999999854 45778999999999999875221 24556678777766666655 7664211 1
Q ss_pred E-----EcCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013890 368 L-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 368 ~-----~~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 432 (434)
. +...++. ...++|+|+++ ++++|||+|++|++++++ +.++.+|++++|++||..+..+.+|+.+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~pt~~e 442 (463)
T TIGR02053 367 DCRTLPLTNVPRARINRDTRGFIKLVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDTLHPFPTMAE 442 (463)
T ss_pred EEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHH
Confidence 1 1111111 24578999887 579999999999999887 9999999999999999999888888765
No 26
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=3.2e-47 Score=391.76 Aligned_cols=385 Identities=24% Similarity=0.366 Sum_probs=311.6
Q ss_pred EEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHCCc
Q 013890 8 YVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGI 87 (434)
Q Consensus 8 vvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 87 (434)
|||||+|+||+++|.+|++.+.+..+|+||++++..+|.++.++..+........+ .....+++++.++
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l-----------~~~~~~~~~~~gv 69 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDI-----------TLNSKDWYEKHGI 69 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHc-----------cCCCHHHHHHCCC
Confidence 68999999999999999987633457999999999999887766522111111111 1345788889999
Q ss_pred EEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEE
Q 013890 88 ELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAV 167 (434)
Q Consensus 88 ~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vv 167 (434)
+++.++.|+.|+++.++|.+.++.++.||+||||||+.|+.|+ ++|.+.++++++++.+++..+.+.+. .+++++
T Consensus 70 ~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~---ipG~~~~~v~~~rt~~d~~~i~~~~~--~~k~vv 144 (785)
T TIGR02374 70 TLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPFILP---IPGADKKGVYVFRTIEDLDAIMAMAQ--RFKKAA 144 (785)
T ss_pred EEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcCCCC---CCCCCCCCEEEeCCHHHHHHHHHHhh--cCCeEE
Confidence 9999999999999999999999989999999999999999888 57777788999999999988887665 478999
Q ss_pred EECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCC
Q 013890 168 VVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG 247 (434)
Q Consensus 168 VvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g 247 (434)
|||+|++|+|+|..|.+.|.+|+++++.+.+++..+++...+.+.+.+++.||++++++.+.++.. ++.+..+.+++|
T Consensus 145 VVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG 222 (785)
T TIGR02374 145 VIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDG 222 (785)
T ss_pred EECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCC
Confidence 999999999999999999999999999999888778999999999999999999999999999975 456678889999
Q ss_pred cEEEcCEEEEccCCccChhhhhc-cccccCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHH
Q 013890 248 RTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAV 326 (434)
Q Consensus 248 ~~i~~d~vv~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa 326 (434)
+++++|.||+++|++|+++++.. ++... |+|.||+++||++|+|||+|||+..+...+ ..+..|..||+++|
T Consensus 223 ~~i~~D~Vi~a~G~~Pn~~la~~~gl~~~-ggI~Vd~~~~Ts~p~IyA~GD~a~~~~~~~------gl~~~a~~qa~vaA 295 (785)
T TIGR02374 223 SSLEADLIVMAAGIRPNDELAVSAGIKVN-RGIIVNDSMQTSDPDIYAVGECAEHNGRVY------GLVAPLYEQAKVLA 295 (785)
T ss_pred CEEEcCEEEECCCCCcCcHHHHhcCCccC-CCEEECCCcccCCCCEEEeeecceeCCccc------ccHHHHHHHHHHHH
Confidence 99999999999999999998754 55554 789999999999999999999998765322 46788999999999
Q ss_pred HHHhccCCCCcccCCCCC-CeeEEeecCcceEEeecCCCc----EEEEcCCCccccCCcEEEEEEeCCEEEEEEEecCCh
Q 013890 327 KTIMATEGGKTVTGYDYL-PYFYSRAFDLSWQFYGDNVGD----TVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTP 401 (434)
Q Consensus 327 ~~i~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~G~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~~~ 401 (434)
.||++... ..|... .....+.+++.+...|..... .+.+.+.. ...|.++++++++|+|++++|. .
T Consensus 296 ~ni~g~~~----~~~~~~~~~~~lk~~g~~v~s~G~~~~~~~~~~~~~~d~~----~~~y~kl~~~~~rLlGavlvgd-~ 366 (785)
T TIGR02374 296 DHICGVEC----EEYEGSDLSAKLKLLGVDVWSAGDAQETERTTSIKIYDEQ----KGIYKKLVLSDDKLLGAVLFGD-T 366 (785)
T ss_pred HHhcCCCC----cCCCCCccceEEEECCcceEecccCCCCCCcEEEEEEcCC----CCEEEEEEEECCEEEEEEEECC-H
Confidence 99997531 234433 344566788877777754311 22222221 4468888999999999999995 5
Q ss_pred HHHHHHHHHHHcCCCCCChhhhhcc
Q 013890 402 EENKAIAKVARVQPSVESLDVLKNE 426 (434)
Q Consensus 402 ~~~~~~~~~i~~~~~~~~~~~~~~~ 426 (434)
.+...+..++.++..+.+...|+-+
T Consensus 367 ~~~~~L~~li~~~~~l~~~~~ll~~ 391 (785)
T TIGR02374 367 SDYGRLLDMVLKQADISEDPAIIKP 391 (785)
T ss_pred HHHHHHHHHHHcCCCCCcChhhhcC
Confidence 6778888889999877654344443
No 27
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=9.7e-49 Score=383.27 Aligned_cols=393 Identities=20% Similarity=0.241 Sum_probs=284.7
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCCccccccCCCCC----CCCCCcceec--CC---CC
Q 013890 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEGT----ARLPGFHVCV--GS---GG 74 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~--~~---~~ 74 (434)
+++|||||+||++||..+++.|.+ |+|||++... ....|.++|.++..... .....+.... .. +.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~---V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 78 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKN---VTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDW 78 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCc---EEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCH
Confidence 799999999999999999999987 9999998642 22335556655432110 0000000000 00 00
Q ss_pred --------------CCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCC-cEEEeceEEEccCCCcccccCCCCCCCCC
Q 013890 75 --------------ERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGSTVLRLTDFGVEGADA 139 (434)
Q Consensus 75 --------------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~lilAtG~~~~~p~~~~i~g~~~ 139 (434)
.......+++.+++++.+ ++..++.....|...++ .++.||+||||||++|+.|+. ++.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p~---~~~~~ 154 (458)
T PRK06912 79 KQMQARKSQIVTQLVQGIQYLMKKNKIKVIQG-KASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPF---APFDG 154 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCCC---CCCCC
Confidence 011223345568999887 55555433333444444 479999999999999987763 44443
Q ss_pred CCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcC
Q 013890 140 KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKG 219 (434)
Q Consensus 140 ~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 219 (434)
..+++. .++..+. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.|
T Consensus 155 ~~v~~~---~~~~~~~-----~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~-~d~e~~~~l~~~L~~~G 225 (458)
T PRK06912 155 KWIINS---KHAMSLP-----SIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG-EDEDIAHILREKLENDG 225 (458)
T ss_pred CeEEcc---hHHhCcc-----ccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc-ccHHHHHHHHHHHHHCC
Confidence 445543 2332221 14789999999999999999999999999999999998886 68999999999999999
Q ss_pred cEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEEcCEEEEccCCccChhhh---hccccccCCcEEeCCCCCCCCCceEE
Q 013890 220 IKIIKGTVAVGFTTNADGEVNEVKLKDG--RTLEADIVVVGVGGRPLISLF---KGQVAENKGGIETDDFFKTSADDVYA 294 (434)
Q Consensus 220 V~~~~~~~v~~i~~~~~g~~~~v~~~~g--~~i~~d~vv~a~G~~p~~~~~---~~~~~~~~g~i~vd~~~~t~~~~iya 294 (434)
|++++++.+++++. ++....+.. +| +++++|.|++|+|++|+++.+ ..++...+++|.||+++||+.|||||
T Consensus 226 I~i~~~~~V~~i~~--~~~~v~~~~-~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~gi~Vd~~~~ts~~~VyA 302 (458)
T PRK06912 226 VKIFTGAALKGLNS--YKKQALFEY-EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGISVNEHMQTNVPHIYA 302 (458)
T ss_pred CEEEECCEEEEEEE--cCCEEEEEE-CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCCEEeCCCeecCCCCEEE
Confidence 99999999999976 222223333 34 369999999999999998754 23555545569999999999999999
Q ss_pred ecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCc------EEE
Q 013890 295 VGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD------TVL 368 (434)
Q Consensus 295 ~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~------~~~ 368 (434)
+|||+..+ +.+..|..||++||.|+.+... ...+..+|..+++.|+++.+ |+++.+ .+.
T Consensus 303 ~GD~~~~~----------~la~~A~~~g~~aa~~~~g~~~---~~~~~~~p~~v~~~p~~a~v--Glte~~a~~~g~~~~ 367 (458)
T PRK06912 303 CGDVIGGI----------QLAHVAFHEGTTAALHASGEDV---KVNYHAVPRCIYTSPEIASV--GLTEKQAREQYGDIR 367 (458)
T ss_pred EeecCCCc----------ccHHHHHHHHHHHHHHHcCCCC---CCCcCCCCeEEecCchhEEe--eCCHHHHHHCCCCeE
Confidence 99999743 4677899999999999986432 24567889888766776665 665421 111
Q ss_pred Ec-----CCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890 369 FG-----DNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK 433 (434)
Q Consensus 369 ~~-----~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 433 (434)
.+ ...+. ..+.+|+|+++ ++++|||+|++|++++|+ +.++.||++++|++||..+..+.++|++.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~ 443 (458)
T PRK06912 368 IGEFPFTANGKALIIGEQTGKVKVIVEPKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIMEDFIAAHPTLSEA 443 (458)
T ss_pred EEEEecCcchhHhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCCHHHH
Confidence 11 11111 23577899888 579999999999999887 99999999999999999999999999874
No 28
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=2.4e-48 Score=391.19 Aligned_cols=395 Identities=19% Similarity=0.222 Sum_probs=284.3
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCCccccccCCCC------CCCC-CCcceecCCC
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEG------TARL-PGFHVCVGSG 73 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~ 73 (434)
..|||+||||||||++||..|++.|.+ |+|||++... ....|.+++.++.... ...+ .++.......
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~---v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 173 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGAR---VTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTI 173 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCe---EEEEecCcceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCcc
Confidence 469999999999999999999999987 9999998431 1222444554322111 0000 1111000000
Q ss_pred CC----------------CCCHhHHHHC-CcEEEcCCeEEEEeCCCCEEEcCCC--cEEEeceEEEccCCCcccccCCCC
Q 013890 74 GE----------------RLLPEWYKEK-GIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVLRLTDFGV 134 (434)
Q Consensus 74 ~~----------------~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lilAtG~~~~~p~~~~i 134 (434)
.. ..+...+.+. +++++.+ ++..++.....|...++ .++.||+||||||++|..|+ +
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~---i 249 (561)
T PRK13748 174 DRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHG-EARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPP---I 249 (561)
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCC---C
Confidence 00 0112233444 7899987 66666654445555555 36999999999999999887 4
Q ss_pred CCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHH
Q 013890 135 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY 214 (434)
Q Consensus 135 ~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (434)
+|.+...+++ +.+ . +. ....+++++|||+|++|+|+|..|.++|.+|+++++. .+++. +++++.+.+.+.
T Consensus 250 ~g~~~~~~~~--~~~-~--~~---~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~-~~l~~-~d~~~~~~l~~~ 319 (561)
T PRK13748 250 PGLKETPYWT--STE-A--LV---SDTIPERLAVIGSSVVALELAQAFARLGSKVTILARS-TLFFR-EDPAIGEAVTAA 319 (561)
T ss_pred CCCCccceEc--cHH-H--hh---cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-ccccc-cCHHHHHHHHHH
Confidence 5543323332 221 1 11 1124789999999999999999999999999999985 45555 799999999999
Q ss_pred HHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCCCCCCCCC
Q 013890 215 YANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSAD 290 (434)
Q Consensus 215 l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~ 290 (434)
+++.||++++++.+++++.+ ++. ..+.+.++ ++++|.|++|+|++||++++ ..++.. .+|+|.||+++||++|
T Consensus 320 l~~~gI~i~~~~~v~~i~~~-~~~-~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~ 396 (561)
T PRK13748 320 FRAEGIEVLEHTQASQVAHV-DGE-FVLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVP 396 (561)
T ss_pred HHHCCCEEEcCCEEEEEEec-CCE-EEEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCC
Confidence 99999999999999999863 332 34555555 69999999999999999854 345666 5688999999999999
Q ss_pred ceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCc-----
Q 013890 291 DVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD----- 365 (434)
Q Consensus 291 ~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~----- 365 (434)
||||+|||++.+ .....|..||++|+.||++... ..++...|...+..|+++.+ |+++.+
T Consensus 397 ~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~---~~~~~~~p~~~~~~p~~a~v--Glte~~a~~~g 461 (561)
T PRK13748 397 HIYAAGDCTDQP----------QFVYVAAAAGTRAAINMTGGDA---ALDLTAMPAVVFTDPQVATV--GYSEAEAHHDG 461 (561)
T ss_pred CEEEeeecCCCc----------cchhHHHHHHHHHHHHHcCCCc---ccCCCCCCeEEEccCCceee--eCCHHHHHHcC
Confidence 999999999865 3456788999999999986532 24566788777666665555 766521
Q ss_pred -EE-----EEcCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890 366 -TV-----LFGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK 433 (434)
Q Consensus 366 -~~-----~~~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 433 (434)
.+ .+.+.... ...++|+|+++ ++++|||+|++|++++++ +.++.+|++++|++||..+..+.++|+|.
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~ 541 (561)
T PRK13748 462 IETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEG 541 (561)
T ss_pred CCeEEEEEecccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcccccCCchHHH
Confidence 11 11121111 23578999888 489999999999999887 99999999999999999999999999874
No 29
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=5.1e-48 Score=384.98 Aligned_cols=399 Identities=20% Similarity=0.253 Sum_probs=287.8
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC--C---CCCCCCCccccccCCCCC----CC---CCCccee---
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA--V---APYERPALSKAYLFPEGT----AR---LPGFHVC--- 69 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~--~---~~~~~~~~~~~~~~~~~~----~~---~~~~~~~--- 69 (434)
+|||+|||+|++|..||..++++|.+ |+|||++. . +....|.++|.++..... .+ ++.+...
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~k---V~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~ 192 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLK---VIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNA 192 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeecc
Confidence 68999999999999999999999998 99999752 1 223446666665533311 00 0111111
Q ss_pred --------------c-CCC--C---------------CCCCHhHHHHC-------CcEEEcCCeEEEEeCCCCEEEc-CC
Q 013890 70 --------------V-GSG--G---------------ERLLPEWYKEK-------GIELILSTEIVRADIASKTLLS-AT 109 (434)
Q Consensus 70 --------------~-~~~--~---------------~~~~~~~~~~~-------~v~~~~~~~v~~i~~~~~~v~~-~~ 109 (434)
. ... . .......+++. +++++.+...+ + +.++|.+ .+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f-~--~~~~v~v~~~ 269 (659)
T PTZ00153 193 FKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHI-V--DKNTIKSEKS 269 (659)
T ss_pred ccccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEE-e--cCCeEEEccC
Confidence 0 000 0 01111223333 36777763322 1 3455544 35
Q ss_pred CcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeE
Q 013890 110 GLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDV 189 (434)
Q Consensus 110 ~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v 189 (434)
+.++.||++|||||++|..|+. .+.+...++++. ++..+.. .+++++|||+|++|+|+|..|.++|.+|
T Consensus 270 g~~i~ad~lIIATGS~P~~P~~---~~~~~~~V~ts~---d~~~l~~-----lpk~VvIVGgG~iGvE~A~~l~~~G~eV 338 (659)
T PTZ00153 270 GKEFKVKNIIIATGSTPNIPDN---IEVDQKSVFTSD---TAVKLEG-----LQNYMGIVGMGIIGLEFMDIYTALGSEV 338 (659)
T ss_pred CEEEECCEEEEcCCCCCCCCCC---CCCCCCcEEehH---Hhhhhhh-----cCCceEEECCCHHHHHHHHHHHhCCCeE
Confidence 6789999999999999988874 334445677543 3333321 3789999999999999999999999999
Q ss_pred EEEeeCCccCCcccCHHHHHHHHHHH-HHcCcEEEcCCeEEEEEecCCCcEEEEEeCC-------C--------cEEEcC
Q 013890 190 SMVYPEPWCMPRLFTADIAAFYEGYY-ANKGIKIIKGTVAVGFTTNADGEVNEVKLKD-------G--------RTLEAD 253 (434)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~-------g--------~~i~~d 253 (434)
+++++.+++++. +++++.+.+.+.+ ++.||++++++.|.+++..+++....+.+.+ + +++++|
T Consensus 339 TLIe~~~~ll~~-~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD 417 (659)
T PTZ00153 339 VSFEYSPQLLPL-LDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVD 417 (659)
T ss_pred EEEeccCccccc-CCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcC
Confidence 999999999986 7999999998875 6799999999999999864333323343321 1 379999
Q ss_pred EEEEccCCccChhhh---hccccccCCcEEeCCCCCCC------CCceEEecccccccccccCcccccccHHHHHHHHHH
Q 013890 254 IVVVGVGGRPLISLF---KGQVAENKGGIETDDFFKTS------ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQ 324 (434)
Q Consensus 254 ~vv~a~G~~p~~~~~---~~~~~~~~g~i~vd~~~~t~------~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~ 324 (434)
.|++|+|++||++.+ ..++..++|+|.||++|||+ +|+|||+|||++.+ .+...|.+||+.
T Consensus 418 ~VlvAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~----------~La~~A~~qg~~ 487 (659)
T PTZ00153 418 SCLVATGRKPNTNNLGLDKLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQ----------MLAHTASHQALK 487 (659)
T ss_pred EEEEEECcccCCccCCchhcCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEecCCCc----------cCHHHHHHHHHH
Confidence 999999999999865 23555566889999999997 69999999998654 456788999999
Q ss_pred HHHHHhccCCC----------CcccCCCCCCeeEEeecCcceEEeecCCCcE-------------EEEcCCCcc------
Q 013890 325 AVKTIMATEGG----------KTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT-------------VLFGDNDLA------ 375 (434)
Q Consensus 325 aa~~i~~~~~~----------~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~-------------~~~~~~~~~------ 375 (434)
|++||.+.... .....|..+|..+++.|+++.+ |+++.+. ..+....++
T Consensus 488 aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~~ift~PeiA~V--GlTE~eA~~~g~~~~v~v~~~~~~~~~ra~~~~~~ 565 (659)
T PTZ00153 488 VVDWIEGKGKENVNINVENWASKPIIYKNIPSVCYTTPELAFI--GLTEKEAKELYPPDNVGVEISFYKANSKVLCENNI 565 (659)
T ss_pred HHHHHcCCCccccccccccccccccccCcCCEEEECcCceEEe--eCCHHHHHhcCCCcceEEEEEEecccchhhhcccc
Confidence 99999875210 1235677899988888888776 7665211 111111111
Q ss_pred -------------------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890 376 -------------------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK 433 (434)
Q Consensus 376 -------------------~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 433 (434)
...++|+|+++ ++++|||+|++|++++++ +.++.||++++|++||..+..+.+++++.
T Consensus 566 ~~p~~~~~~~y~~g~~~~~~~~~G~vKli~d~~t~rILGa~ivG~~A~elI~~~a~aI~~~~tv~dl~~~~~~hPT~sE~ 645 (659)
T PTZ00153 566 SFPNNSKNNSYNKGKYNTVDNTEGMVKIVYLKDTKEILGMFIVGSYASILIHEGVLAINLKLSVKDLAHMVHSHPTISEV 645 (659)
T ss_pred ccccccccccccccccccccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCChHHH
Confidence 01578999888 589999999999999887 99999999999999999999999998864
No 30
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=3.8e-48 Score=380.54 Aligned_cols=395 Identities=18% Similarity=0.169 Sum_probs=282.0
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC----CCCCCCccccccCCCCC----CCCC--Ccceec-CC
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA----PYERPALSKAYLFPEGT----ARLP--GFHVCV-GS 72 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~----~~~~~~~~~~~~~~~~~----~~~~--~~~~~~-~~ 72 (434)
.+||++|||+|++|+++|..|+++|.+ |++||+++.. ....|.+++.++..... ...+ ++.... ..
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~---v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~ 91 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGAR---VTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSI 91 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCe---EEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCcc
Confidence 369999999999999999999999987 9999997432 12234455544322100 0001 111000 00
Q ss_pred C--------------C-CCCCHhHHHHC-CcEEEcCCeEEEEeCCCCEEEcCCC--cEEEeceEEEccCCCcccccCCCC
Q 013890 73 G--------------G-ERLLPEWYKEK-GIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVLRLTDFGV 134 (434)
Q Consensus 73 ~--------------~-~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lilAtG~~~~~p~~~~i 134 (434)
. . ...+.+.++.. +++++.+. ..-++...-.|...++ .++.||+||||||++|..|+ +
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~-a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~---i 167 (479)
T PRK14727 92 DRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGY-ARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPP---I 167 (479)
T ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEE-EEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCC---C
Confidence 0 0 00122333333 78888873 3333332223444555 36999999999999999888 4
Q ss_pred CCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHH
Q 013890 135 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY 214 (434)
Q Consensus 135 ~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (434)
+|.+...+++ + .+. +. ....+++++|||+|++|+|+|..|.+.|.+|+++.+. .+++. +++++.+.+.+.
T Consensus 168 ~G~~~~~~~~--~-~~~--l~---~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l~~-~d~~~~~~l~~~ 237 (479)
T PRK14727 168 PGLMDTPYWT--S-TEA--LF---SDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLLFR-EDPLLGETLTAC 237 (479)
T ss_pred CCcCccceec--c-hHH--hc---cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCCCc-chHHHHHHHHHH
Confidence 5543333332 1 111 11 1124789999999999999999999999999999875 56665 799999999999
Q ss_pred HHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCCCCCCCCC
Q 013890 215 YANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSAD 290 (434)
Q Consensus 215 l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~ 290 (434)
+++.||++++++.+++++.++++ ..+.+.++ ++++|.|++|+|++|++.++ ..++.. .+|+|.||+++||++|
T Consensus 238 L~~~GV~i~~~~~V~~i~~~~~~--~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~ 314 (479)
T PRK14727 238 FEKEGIEVLNNTQASLVEHDDNG--FVLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAP 314 (479)
T ss_pred HHhCCCEEEcCcEEEEEEEeCCE--EEEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeecCCC
Confidence 99999999999999999863322 34555555 69999999999999999854 235655 5688999999999999
Q ss_pred ceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCcE----
Q 013890 291 DVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT---- 366 (434)
Q Consensus 291 ~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~---- 366 (434)
+|||+|||++.+. ....|..||+.||.||++... ..++...|+..+..|+++.+ |+++.+.
T Consensus 315 ~IyA~GD~~~~~~----------~~~~A~~~G~~aa~~i~g~~~---~~~~~~~p~~~~~~p~ia~v--Glte~~a~~~g 379 (479)
T PRK14727 315 DIYAAGDCSDLPQ----------FVYVAAAAGSRAGINMTGGNA---TLDLSAMPAVIFTDPQVATV--GLSEAKAHLSG 379 (479)
T ss_pred CEEEeeecCCcch----------hhhHHHHHHHHHHHHHcCCCc---ccccccCCcEEEecCceeee--eCCHHHHHHcC
Confidence 9999999997653 456788999999999987532 25566788877666666555 7665211
Q ss_pred -------EEEcCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890 367 -------VLFGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK 433 (434)
Q Consensus 367 -------~~~~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 433 (434)
..+.+.... ...++|+|+++ ++++|||+|++|++++|+ +.++.||++++|++||..+.-+.++++|.
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~ 459 (479)
T PRK14727 380 IETISRVLTMENVPRALANFETDGFIKLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQLFPYLTMVEG 459 (479)
T ss_pred CceEEEEEEcccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCCccCCChHHH
Confidence 111221111 23578999888 579999999999999887 99999999999999999999999998874
No 31
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=1.6e-48 Score=380.48 Aligned_cols=393 Identities=17% Similarity=0.200 Sum_probs=283.9
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC-C----CCCCCccccccCCCCCCCCCCcceecC------CC
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA-P----YERPALSKAYLFPEGTARLPGFHVCVG------SG 73 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 73 (434)
.|||+||||||||++||..|+++|++ |+|||+++.. + ...|.+++.++...... ..+..... ..
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~---V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~--~~~~~~~~~~~~~~~~ 77 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKK---VALVEESKAMYGGTCINIGCIPTKTLLVAAEKN--LSFEQVMATKNTVTSR 77 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCE---EEEEecCCcccceeeecCccccchHhhhhhhcC--CCHHHHHHHHHHHHHH
Confidence 69999999999999999999999987 9999998632 1 11122333333221110 01100000 00
Q ss_pred CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCC---CcEEEeceEEEccCCCcccccCCCCCCC-CCCCEEEEeCHH
Q 013890 74 GERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT---GLIFKYQILVIATGSTVLRLTDFGVEGA-DAKNIFYLREID 149 (434)
Q Consensus 74 ~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~---~~~~~~d~lilAtG~~~~~p~~~~i~g~-~~~~v~~~~~~~ 149 (434)
......+.+.+.+++++.+. ... .++++|.+.+ ..++.||+||||||++|..|+. +|. +..++++..
T Consensus 78 ~~~~~~~~~~~~gV~~~~g~-~~~--~~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~i---~G~~~~~~v~~~~--- 148 (438)
T PRK07251 78 LRGKNYAMLAGSGVDLYDAE-AHF--VSNKVIEVQAGDEKIELTAETIVINTGAVSNVLPI---PGLADSKHVYDST--- 148 (438)
T ss_pred HHHHHHHHHHhCCCEEEEEE-EEE--ccCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCCC---CCcCCCCcEEchH---
Confidence 00112345567789998874 332 2456665533 2479999999999999998884 554 234566443
Q ss_pred HHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEE
Q 013890 150 DADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAV 229 (434)
Q Consensus 150 ~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~ 229 (434)
++..+. ..+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+.+++.||++++++.+.
T Consensus 149 ~~~~~~-----~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~GI~i~~~~~V~ 222 (438)
T PRK07251 149 GIQSLE-----TLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR-EEPSVAALAKQYMEEDGITFLLNAHTT 222 (438)
T ss_pred HHhcch-----hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC-CCHHHHHHHHHHHHHcCCEEEcCCEEE
Confidence 222221 14789999999999999999999999999999999999886 689999999999999999999999999
Q ss_pred EEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhhh---ccccc-cCCcEEeCCCCCCCCCceEEecccccccccc
Q 013890 230 GFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFK---GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKL 305 (434)
Q Consensus 230 ~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~---~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~ 305 (434)
+++.+ ++. ..+. .+++++++|.+++|+|++|+.+.+. .++.. .+|++.||+++||+.|+|||+|||++.+.
T Consensus 223 ~i~~~-~~~-v~v~-~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~IyaiGD~~~~~~-- 297 (438)
T PRK07251 223 EVKND-GDQ-VLVV-TEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDVNGGPQ-- 297 (438)
T ss_pred EEEec-CCE-EEEE-ECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc--
Confidence 99862 232 2333 4567899999999999999987642 34444 56889999999999999999999997543
Q ss_pred cCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCcE------E-----EEcCCCc
Q 013890 306 YREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT------V-----LFGDNDL 374 (434)
Q Consensus 306 ~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~------~-----~~~~~~~ 374 (434)
....|..+|+.++.++++... .....+..+|+..+..|+++.+ |+++.+. + .+...+.
T Consensus 298 --------~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~p~ia~v--Glte~~a~~~g~~~~~~~~~~~~~~~ 366 (438)
T PRK07251 298 --------FTYISLDDFRIVFGYLTGDGS-YTLEDRGNVPTTMFITPPLSQV--GLTEKEAKEAGLPYAVKELLVAAMPR 366 (438)
T ss_pred --------cHhHHHHHHHHHHHHHcCCCC-ccccccCCCCEEEECCCceEee--eCCHHHHHhcCCCeEEEEEECCcchh
Confidence 355677899999999886532 1124556788876655655554 7664211 1 1122222
Q ss_pred c---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890 375 A---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK 433 (434)
Q Consensus 375 ~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 433 (434)
+ .+.++++|+++ ++++|||+|++|++++|+ +.++.||++++|++||.....+.+|+++.
T Consensus 367 ~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~ 431 (438)
T PRK07251 367 AHVNNDLRGAFKVVVNTETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFKKQIFTHPTMAEN 431 (438)
T ss_pred hhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHH
Confidence 1 23467899887 579999999999999887 99999999999999999988899998864
No 32
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=1.3e-48 Score=382.45 Aligned_cols=394 Identities=19% Similarity=0.170 Sum_probs=283.3
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC------------CCCCCCCCccccccCCCCC----CCCCCcce
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA------------VAPYERPALSKAYLFPEGT----ARLPGFHV 68 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~------------~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 68 (434)
.||+||||+|++|+.||..+++.|.+ |++||+.. .+....|.++|.++..... .....+..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~---v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~ 78 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAK---VMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGW 78 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCc
Confidence 58999999999999999999999987 99999731 1122335555554432211 00011111
Q ss_pred ecCC----C--------------CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcC--CC--cEEEeceEEEccCCCc
Q 013890 69 CVGS----G--------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSA--TG--LIFKYQILVIATGSTV 126 (434)
Q Consensus 69 ~~~~----~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~--~~--~~~~~d~lilAtG~~~ 126 (434)
.... + .......+++..+++++.+.. .-++ .++|.+. ++ .++.||+||||||++|
T Consensus 79 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a-~f~~--~~~v~v~~~~g~~~~~~~d~lVIATGs~p 155 (484)
T TIGR01438 79 NVEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYA-EFVD--KHRIKATNKKGKEKIYSAERFLIATGERP 155 (484)
T ss_pred ccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEE-EEcC--CCEEEEeccCCCceEEEeCEEEEecCCCC
Confidence 0000 0 011223446678999999843 3333 4455442 33 4799999999999999
Q ss_pred ccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHH
Q 013890 127 LRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTAD 206 (434)
Q Consensus 127 ~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~ 206 (434)
+.|+ ++|... ..+ +..++..+. ..+++++|||+|++|+|+|..|+++|.+|+++.+ +.+++. +|++
T Consensus 156 ~~p~---ipG~~~-~~~---~~~~~~~~~-----~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~~-~d~~ 221 (484)
T TIGR01438 156 RYPG---IPGAKE-LCI---TSDDLFSLP-----YCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRG-FDQD 221 (484)
T ss_pred CCCC---CCCccc-eee---cHHHhhccc-----ccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-cccccc-cCHH
Confidence 8887 455421 122 333333221 1468999999999999999999999999999987 466664 7999
Q ss_pred HHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCC---cEEEcCEEEEccCCccChhhh---hcccccc--CCc
Q 013890 207 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG---RTLEADIVVVGVGGRPLISLF---KGQVAEN--KGG 278 (434)
Q Consensus 207 ~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g---~~i~~d~vv~a~G~~p~~~~~---~~~~~~~--~g~ 278 (434)
+.+.+.+.|+++||++++++.+.++...+ +. ..+.+.++ +++++|.|++|+|++||++++ ..++..+ +|+
T Consensus 222 ~~~~l~~~L~~~gV~i~~~~~v~~v~~~~-~~-~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~ 299 (484)
T TIGR01438 222 CANKVGEHMEEHGVKFKRQFVPIKVEQIE-AK-VKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGK 299 (484)
T ss_pred HHHHHHHHHHHcCCEEEeCceEEEEEEcC-Ce-EEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCe
Confidence 99999999999999999999999997632 32 34655555 379999999999999999864 3355553 488
Q ss_pred EEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEE
Q 013890 279 IETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQF 358 (434)
Q Consensus 279 i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 358 (434)
|.||+++||++|+|||+|||+.... .....|..||+.+++||++.... ...|..+|+.+++.|+++.+
T Consensus 300 I~Vd~~~~Ts~p~IyA~GDv~~~~~---------~l~~~A~~~g~~aa~~i~~~~~~--~~~~~~~p~~i~~~p~ia~v- 367 (484)
T TIGR01438 300 IPADEEEQTNVPYIYAVGDILEDKQ---------ELTPVAIQAGRLLAQRLFSGSTV--ICDYENVPTTVFTPLEYGAC- 367 (484)
T ss_pred EecCCCcccCCCCEEEEEEecCCCc---------cchHHHHHHHHHHHHHHhcCCCc--ccccccCCeEEeCCCceeee-
Confidence 9999999999999999999996322 35667999999999999875321 25677789988887777666
Q ss_pred eecCCCcE--------EEEc--CCCcc------cc--CCcEEEEEE---eCCEEEEEEEecCChHHH-HHHHHHHHcCCC
Q 013890 359 YGDNVGDT--------VLFG--DNDLA------SA--THKFGTYWI---KDGKVVGVFLESGTPEEN-KAIAKVARVQPS 416 (434)
Q Consensus 359 ~G~~~~~~--------~~~~--~~~~~------~~--~~~~~~~~~---~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~ 416 (434)
|+++.+. +... ...+. .. ..+|+|+++ ++++|||+|++|++++|+ +.++.||++++|
T Consensus 368 -Glte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~~t 446 (484)
T TIGR01438 368 -GLSEEKAVEKFGEENIEVFHSYFWPLEWTIPSRDNSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCGLT 446 (484)
T ss_pred -cCCHHHHHHhcCCCcEEEEEeecchhhhHhhCCCccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcCCC
Confidence 7654211 1111 11110 11 467898876 379999999999999887 999999999999
Q ss_pred CCChhhhhccCCCcccc
Q 013890 417 VESLDVLKNEGLSFASK 433 (434)
Q Consensus 417 ~~~~~~~~~~~~~~~~~ 433 (434)
++||..+..+.+++++.
T Consensus 447 ~~dl~~~~~~hPt~sE~ 463 (484)
T TIGR01438 447 KKDLDNTIGIHPVCAEV 463 (484)
T ss_pred HHHHhhhhcCCCChHHH
Confidence 99999998899998864
No 33
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=8.8e-47 Score=361.32 Aligned_cols=361 Identities=21% Similarity=0.324 Sum_probs=284.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHC
Q 013890 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
+++||||||+||+++|..|++.+ ++.+|+||++++..+|.++.++..+........+. .....+++++.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~-~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~----------~~~~~~~~~~~ 71 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQD-AHIPITLITADSGDEYNKPDLSHVFSQGQRADDLT----------RQSAGEFAEQF 71 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhC-cCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhh----------cCCHHHHHHhC
Confidence 58999999999999999999875 35779999999988888876654332211111110 11245677888
Q ss_pred CcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCc
Q 013890 86 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGK 165 (434)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~ 165 (434)
+++++.+++|+.++++.+.+.+ ++..+.||+||||||+.|..|+ ++|.+. +++++++.++..+...+. .+++
T Consensus 72 gv~~~~~~~V~~id~~~~~v~~-~~~~~~yd~LVlATG~~~~~p~---i~G~~~--v~~~~~~~~~~~~~~~~~--~~~~ 143 (377)
T PRK04965 72 NLRLFPHTWVTDIDAEAQVVKS-QGNQWQYDKLVLATGASAFVPP---IPGREL--MLTLNSQQEYRAAETQLR--DAQR 143 (377)
T ss_pred CCEEECCCEEEEEECCCCEEEE-CCeEEeCCEEEECCCCCCCCCC---CCCCce--EEEECCHHHHHHHHHHhh--cCCe
Confidence 9999999899999998888875 5678999999999999998887 566543 888888888887776664 4789
Q ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC
Q 013890 166 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK 245 (434)
Q Consensus 166 vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~ 245 (434)
++|||+|++|+|+|..|.+.|.+|+++++.+.+++..+++++.+.+.+.+++.||++++++.+.++..+ +....+.+.
T Consensus 144 vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~--~~~~~v~~~ 221 (377)
T PRK04965 144 VLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKT--DSGIRATLD 221 (377)
T ss_pred EEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEcc--CCEEEEEEc
Confidence 999999999999999999999999999999998887678999999999999999999999999999863 223467788
Q ss_pred CCcEEEcCEEEEccCCccChhhhhc-cccccCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHH
Q 013890 246 DGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQ 324 (434)
Q Consensus 246 ~g~~i~~d~vv~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~ 324 (434)
+|+++++|.||+|+|.+|++++++. ++..++ +|.||+++||++|+|||+|||+..... ..+.+..|..||+.
T Consensus 222 ~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~~-gi~vd~~l~ts~~~VyA~GD~a~~~~~------~~~~~~~a~~~g~~ 294 (377)
T PRK04965 222 SGRSIEVDAVIAAAGLRPNTALARRAGLAVNR-GIVVDSYLQTSAPDIYALGDCAEINGQ------VLPFLQPIQLSAMA 294 (377)
T ss_pred CCcEEECCEEEECcCCCcchHHHHHCCCCcCC-CEEECCCcccCCCCEEEeeecEeECCc------eeehHHHHHHHHHH
Confidence 9999999999999999999988754 555554 499999999999999999999986532 12467778999999
Q ss_pred HHHHHhccCCCCcccCCCCCCe-eEEeecCcceEEeecCCCcE--EEEcCCCccccCCcEEEEEEeCCEEEEEEEecCCh
Q 013890 325 AVKTIMATEGGKTVTGYDYLPY-FYSRAFDLSWQFYGDNVGDT--VLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTP 401 (434)
Q Consensus 325 aa~~i~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~~~ 401 (434)
+|+||.+.. ..|...+. ...+.+++.+..+|...++. +...+. ....|.++++++|+|+|+.++|+.+
T Consensus 295 ~a~n~~g~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~g~~~~g~~~ 365 (377)
T PRK04965 295 LAKNLLGQN-----TPLKLPAMLVKVKTPELPLQLAGETQRQDLRWQINAE----SQGMVAKGVDEAGQLRAFVVSEDRM 365 (377)
T ss_pred HHHHhcCCC-----cccccCCccEEEecCceeeEECCCCCCCCceEEEEeC----CCCeEEEEEccCCcEEEEEEEChhH
Confidence 999999864 34554333 44567888888888654321 211111 1345778888999999999999765
Q ss_pred HH
Q 013890 402 EE 403 (434)
Q Consensus 402 ~~ 403 (434)
..
T Consensus 366 ~~ 367 (377)
T PRK04965 366 KE 367 (377)
T ss_pred HH
Confidence 43
No 34
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=4.6e-48 Score=376.89 Aligned_cols=393 Identities=18% Similarity=0.221 Sum_probs=287.4
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC---CCCCCCCccccccCCCCC----CCCCCcceecCC-----
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV---APYERPALSKAYLFPEGT----ARLPGFHVCVGS----- 72 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----- 72 (434)
+||++|||+|++|..||.. ..|.+ |+|||++.. +....|.++|.++..... .....+......
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~---V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~ 76 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKR---IAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRW 76 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCe---EEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCH
Confidence 5999999999999988654 45877 999999754 233446667765533211 011111110000
Q ss_pred ------C---CC----CCCHhHH---HHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCC
Q 013890 73 ------G---GE----RLLPEWY---KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEG 136 (434)
Q Consensus 73 ------~---~~----~~~~~~~---~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g 136 (434)
. .. .....+. ++.+++++.++.++. +.++|.+.+++++.||+||||||++|..|+. .+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~---~~~~V~~~~g~~~~~d~lIiATGs~p~~p~~---~~ 150 (452)
T TIGR03452 77 PDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV---GPRTLRTGDGEEITGDQIVIAAGSRPYIPPA---IA 150 (452)
T ss_pred HHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe---cCCEEEECCCcEEEeCEEEEEECCCCCCCCC---CC
Confidence 0 00 0011121 226899999865544 5778888778889999999999999988763 22
Q ss_pred CCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHH
Q 013890 137 ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA 216 (434)
Q Consensus 137 ~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~ 216 (434)
.. ++. ..+..++..+.+ .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+
T Consensus 151 ~~--~~~-~~~~~~~~~l~~-----~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~~~~l~~~~- 220 (452)
T TIGR03452 151 DS--GVR-YHTNEDIMRLPE-----LPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH-LDEDISDRFTEIA- 220 (452)
T ss_pred CC--CCE-EEcHHHHHhhhh-----cCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-cCHHHHHHHHHHH-
Confidence 11 222 245556555432 4789999999999999999999999999999999988775 7999988887755
Q ss_pred HcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhhh---ccccc-cCCcEEeCCCCCCCCCce
Q 013890 217 NKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFK---GQVAE-NKGGIETDDFFKTSADDV 292 (434)
Q Consensus 217 ~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~---~~~~~-~~g~i~vd~~~~t~~~~i 292 (434)
+.||++++++.+.+++.++++ ..+.+.+|+++++|.|++|+|++|+++++. .++.. .+|+|.||+++||++|+|
T Consensus 221 ~~gI~i~~~~~V~~i~~~~~~--v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~I 298 (452)
T TIGR03452 221 KKKWDIRLGRNVTAVEQDGDG--VTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGV 298 (452)
T ss_pred hcCCEEEeCCEEEEEEEcCCe--EEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCCCCE
Confidence 468999999999999863333 356677888999999999999999998753 35666 568899999999999999
Q ss_pred EEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCcE------
Q 013890 293 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT------ 366 (434)
Q Consensus 293 ya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~------ 366 (434)
||+|||++.+ +....|.+||+++|+||++.... ....+..+|+++++.|+++.+ |+++.+.
T Consensus 299 yA~GD~~~~~----------~l~~~A~~~g~~~a~ni~~~~~~-~~~~~~~~p~~i~t~p~ia~v--Glte~ea~~~g~~ 365 (452)
T TIGR03452 299 WALGDVSSPY----------QLKHVANAEARVVKHNLLHPNDL-RKMPHDFVPSAVFTHPQIATV--GLTEQEAREAGHD 365 (452)
T ss_pred EEeecccCcc----------cChhHHHHHHHHHHHHhcCCCCc-ccCCCCCCCeEEECCCCeeee--eCCHHHHHhcCCC
Confidence 9999999754 34567889999999999875321 125667899988877776666 7665211
Q ss_pred EEE-----cCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhh-hccCCCcccc
Q 013890 367 VLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVL-KNEGLSFASK 433 (434)
Q Consensus 367 ~~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~ 433 (434)
+.. .+..++ ..+.+|+|+++ ++++|||+|++|++++|+ +.++.||++++|++||..+ ..+.++|++.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~ 444 (452)
T TIGR03452 366 ITVKIQNYGDVAYGWAMEDTTGFCKLIADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARKQYWIHPALPEV 444 (452)
T ss_pred eEEEEecCCchhhHhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCcccCCchHHH
Confidence 111 111111 34578999888 589999999999999887 9999999999999999986 4688888764
No 35
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=3e-48 Score=381.27 Aligned_cols=399 Identities=22% Similarity=0.282 Sum_probs=284.1
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeC-------CCC---CCCCCCCccccccCCCCC-----CCCCCc
Q 013890 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISK-------EAV---APYERPALSKAYLFPEGT-----ARLPGF 66 (434)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~-------~~~---~~~~~~~~~~~~~~~~~~-----~~~~~~ 66 (434)
|++.||++|||||+||++||.++++.|.+ |+|||+ ... +....|.+++.++..... .....+
T Consensus 1 ~~~~~DviIIG~G~aG~~aA~~~~~~g~~---v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~ 77 (475)
T PRK06327 1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLK---VACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADH 77 (475)
T ss_pred CCcceeEEEECCCHHHHHHHHHHHhCCCe---EEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhc
Confidence 34579999999999999999999999987 999998 211 011112223322211100 000000
Q ss_pred ceecCCC--C---------------CCCCHhHHHHCCcEEEcCCeEEEEeC--CCCEEEcC--CCcEEEeceEEEccCCC
Q 013890 67 HVCVGSG--G---------------ERLLPEWYKEKGIELILSTEIVRADI--ASKTLLSA--TGLIFKYQILVIATGST 125 (434)
Q Consensus 67 ~~~~~~~--~---------------~~~~~~~~~~~~v~~~~~~~v~~i~~--~~~~v~~~--~~~~~~~d~lilAtG~~ 125 (434)
....... . .....++++..+++++.+ .+..++. +.++|.+. ++.+++||+||||||++
T Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~ 156 (475)
T PRK06327 78 GIHVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKG-RGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSE 156 (475)
T ss_pred CccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCC
Confidence 0000000 0 011223445578999987 5555553 24566653 34579999999999999
Q ss_pred cccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCH
Q 013890 126 VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTA 205 (434)
Q Consensus 126 ~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~ 205 (434)
|+.++. ++ .+...+++. .++..+. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++
T Consensus 157 p~~~p~--~~-~~~~~~~~~---~~~~~~~-----~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~ 224 (475)
T PRK06327 157 PRHLPG--VP-FDNKIILDN---TGALNFT-----EVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA-ADE 224 (475)
T ss_pred CCCCCC--CC-CCCceEECc---HHHhccc-----ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc-CCH
Confidence 975543 22 222334432 2222221 14789999999999999999999999999999999988876 789
Q ss_pred HHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCC--C--cEEEcCEEEEccCCccChhhh---hccccc-cCC
Q 013890 206 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKD--G--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKG 277 (434)
Q Consensus 206 ~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~--g--~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g 277 (434)
++.+.+.+.+++.||++++++.|.+++.++++ ..+.+.+ | +++++|.+++|+|++|+++.+ ..++.. .+|
T Consensus 225 ~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~--v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G 302 (475)
T PRK06327 225 QVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKG--VSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERG 302 (475)
T ss_pred HHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCE--EEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCC
Confidence 99999999999999999999999999873332 3455443 3 469999999999999999843 234555 568
Q ss_pred cEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceE
Q 013890 278 GIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQ 357 (434)
Q Consensus 278 ~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 357 (434)
+|.||+++||++|+|||+|||+..+ .....|..||+.||.||.+... ...|..+|+.++..|+++.+
T Consensus 303 ~i~vd~~~~Ts~~~VyA~GD~~~~~----------~~~~~A~~~G~~aa~~i~g~~~---~~~~~~~p~~~~~~pe~a~v 369 (475)
T PRK06327 303 FIPVDDHCRTNVPNVYAIGDVVRGP----------MLAHKAEEEGVAVAERIAGQKG---HIDYNTIPWVIYTSPEIAWV 369 (475)
T ss_pred eEeECCCCccCCCCEEEEEeccCCc----------chHHHHHHHHHHHHHHHcCCCC---CCCCCCCCeEEeCCcceEEE
Confidence 8999999999999999999999754 3577899999999999986532 14677889988766766655
Q ss_pred EeecCCCc------EEEEc-----CCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCCh
Q 013890 358 FYGDNVGD------TVLFG-----DNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESL 420 (434)
Q Consensus 358 ~~G~~~~~------~~~~~-----~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~ 420 (434)
|+++.+ .+..+ ....+ ....+|+|+++ ++++|||+|++|++++++ +.++.||++++|++||
T Consensus 370 --Glte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l 447 (475)
T PRK06327 370 --GKTEQQLKAEGVEYKAGKFPFMANGRALAMGEPDGFVKIIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDI 447 (475)
T ss_pred --eCCHHHHHHcCCCEEEEEEcccccchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHH
Confidence 766521 11111 11111 34578999888 589999999999999887 9999999999999999
Q ss_pred hhhhccCCCcccc
Q 013890 421 DVLKNEGLSFASK 433 (434)
Q Consensus 421 ~~~~~~~~~~~~~ 433 (434)
..+..+.+++++.
T Consensus 448 ~~~~~~hPt~~e~ 460 (475)
T PRK06327 448 ARICHAHPTLSEV 460 (475)
T ss_pred hcCCcCCCChHHH
Confidence 9999899998763
No 36
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=5.2e-48 Score=379.72 Aligned_cols=396 Identities=23% Similarity=0.239 Sum_probs=281.2
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCCccccccCCCC----CCCCCCcceecCC---C
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEG----TARLPGFHVCVGS---G 73 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---~ 73 (434)
++|||||||||+||++||..|++.|++ |+|||++... ....|.+++.++.... ....+.+...... .
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~ 78 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKK---VALIEKGPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKID 78 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccC
Confidence 359999999999999999999999987 9999995431 1222444443332110 0011111000000 0
Q ss_pred --------------CCCCC-HhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCC
Q 013890 74 --------------GERLL-PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD 138 (434)
Q Consensus 74 --------------~~~~~-~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~ 138 (434)
..... ...++..+++++.+ ....++ .+++.+ ++.++.||+||||||+. .|+.++++...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~--~~~v~v-~~~~~~~d~lIiATGs~--~p~ipg~~~~~ 152 (460)
T PRK06292 79 FKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKG-TARFVD--PNTVEV-NGERIEAKNIVIATGSR--VPPIPGVWLIL 152 (460)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEE-EEEEcc--CCEEEE-CcEEEEeCEEEEeCCCC--CCCCCCCcccC
Confidence 00111 22344567888776 343333 345555 66789999999999999 33322222212
Q ss_pred CCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHc
Q 013890 139 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK 218 (434)
Q Consensus 139 ~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (434)
...++++ .+...+. ..+++++|||+|++|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+.+++.
T Consensus 153 ~~~~~~~---~~~~~~~-----~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~~~~l~~~ 223 (460)
T PRK06292 153 GDRLLTS---DDAFELD-----KLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL-EDPEVSKQAQKILSKE 223 (460)
T ss_pred CCcEECc---hHHhCcc-----ccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-hhHHHHHHHHHHHhhc
Confidence 3445433 3332221 14789999999999999999999999999999999998885 7999999999999999
Q ss_pred CcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCCCCCCCCCce
Q 013890 219 GIKIIKGTVAVGFTTNADGEVNEVKLKDG--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDV 292 (434)
Q Consensus 219 gV~~~~~~~v~~i~~~~~g~~~~v~~~~g--~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~i 292 (434)
|++++++.+.+++..++ ....+.+.++ +++++|.|++|+|++|+++.+ ..++.. ++|.|.||+++||++|+|
T Consensus 224 -I~i~~~~~v~~i~~~~~-~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~I 301 (460)
T PRK06292 224 -FKIKLGAKVTSVEKSGD-EKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGI 301 (460)
T ss_pred -cEEEcCCEEEEEEEcCC-ceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCCCE
Confidence 99999999999986322 1122333333 579999999999999999853 345655 568899999999999999
Q ss_pred EEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCcE------
Q 013890 293 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT------ 366 (434)
Q Consensus 293 ya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~------ 366 (434)
||+|||++.+ ..+..|..||++||.||.+... ....+..+|+.+++.|+++.+ |+++.+.
T Consensus 302 yA~GD~~~~~----------~~~~~A~~qg~~aa~~i~~~~~--~~~~~~~~p~~~~~~~~~a~v--G~te~~a~~~g~~ 367 (460)
T PRK06292 302 YAAGDVNGKP----------PLLHEAADEGRIAAENAAGDVA--GGVRYHPIPSVVFTDPQIASV--GLTEEELKAAGID 367 (460)
T ss_pred EEEEecCCCc----------cchhHHHHHHHHHHHHhcCCCC--CCcCCCCCCeEEECCCccEEe--ECCHHHHHhcCCC
Confidence 9999999754 3567799999999999987421 125667788888777776665 7665211
Q ss_pred EE-----EcCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890 367 VL-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK 433 (434)
Q Consensus 367 ~~-----~~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 433 (434)
+. +....++ ...++|+|+++ ++++|||+|++|++++|+ +.++.+|++++|++||..+.-+.++|++.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~ 445 (460)
T PRK06292 368 YVVGEVPFEAQGRARVMGKNDGFVKVYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLSEG 445 (460)
T ss_pred eEEEEEecccchHHHhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHH
Confidence 11 1111111 24678999888 479999999999999887 99999999999999999999999999874
No 37
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=1.3e-47 Score=377.11 Aligned_cols=398 Identities=20% Similarity=0.189 Sum_probs=280.3
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC----C----C----CCCCCCccccccCCCCC-----CCCC
Q 013890 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA----V----A----PYERPALSKAYLFPEGT-----ARLP 64 (434)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~----~----~----~~~~~~~~~~~~~~~~~-----~~~~ 64 (434)
|+.+||++||||||||++||..++++|.+ |+|||++. . . ....|.+++.++..... ....
T Consensus 2 ~~~~yDviVIG~GpaG~~AA~~aa~~G~~---V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~ 78 (499)
T PTZ00052 2 LTFMYDLVVIGGGSGGMAAAKEAAAHGKK---VALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQ 78 (499)
T ss_pred CccccCEEEECCCHHHHHHHHHHHhCCCe---EEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHh
Confidence 33469999999999999999999999987 99999732 1 1 11123333322211000 0000
Q ss_pred CcceecCC-CC---------------CCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCC---CcEEEeceEEEccCCC
Q 013890 65 GFHVCVGS-GG---------------ERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT---GLIFKYQILVIATGST 125 (434)
Q Consensus 65 ~~~~~~~~-~~---------------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~---~~~~~~d~lilAtG~~ 125 (434)
.+...... .. .......++..+++++.+ .... .+.++|.+.+ +..+.||+||||||+.
T Consensus 79 ~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g-~a~~--~~~~~v~v~~~~~~~~i~~d~lIIATGs~ 155 (499)
T PTZ00052 79 MYGWKTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYING-LAKL--KDEHTVSYGDNSQEETITAKYILIATGGR 155 (499)
T ss_pred cCCCCCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEE-EEEE--ccCCEEEEeeCCCceEEECCEEEEecCCC
Confidence 00000000 00 001112223357777776 3332 2455665532 3579999999999999
Q ss_pred cccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCH
Q 013890 126 VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTA 205 (434)
Q Consensus 126 ~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~ 205 (434)
|..|+. ++|.+. .. .+..++..+. ..+++++|||+|++|+|+|..|+++|.+|+++.+. .+++. +++
T Consensus 156 p~~p~~--i~G~~~-~~---~~~~~~~~~~-----~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~~-~d~ 222 (499)
T PTZ00052 156 PSIPED--VPGAKE-YS---ITSDDIFSLS-----KDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPLRG-FDR 222 (499)
T ss_pred CCCCCC--CCCccc-ee---ecHHHHhhhh-----cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-ccccc-CCH
Confidence 987742 455431 11 2333333221 14689999999999999999999999999999874 55654 799
Q ss_pred HHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh---hccccc-cCCcEEe
Q 013890 206 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIET 281 (434)
Q Consensus 206 ~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~v 281 (434)
++.+.+.+.|++.||++++++.+.+++..+ +. ..+.+.+|+++++|.|++++|++||++++ ..++.. .+|++.+
T Consensus 223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~-~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~ 300 (499)
T PTZ00052 223 QCSEKVVEYMKEQGTLFLEGVVPINIEKMD-DK-IKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIA 300 (499)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeEEEEEEcC-Ce-EEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEee
Confidence 999999999999999999999999997633 22 45777888889999999999999999876 234555 4677777
Q ss_pred CCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeec
Q 013890 282 DDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGD 361 (434)
Q Consensus 282 d~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~ 361 (434)
++. +|++|+|||+|||+.... ..+..|.+||+.+|+||++... ....+..+|+.+++.|+++.+ |+
T Consensus 301 ~~~-~Ts~p~IyAiGDv~~~~~---------~l~~~A~~~g~~aa~ni~g~~~--~~~~~~~~p~~ift~p~ia~v--Gl 366 (499)
T PTZ00052 301 PND-CTNIPNIFAVGDVVEGRP---------ELTPVAIKAGILLARRLFKQSN--EFIDYTFIPTTIFTPIEYGAC--GY 366 (499)
T ss_pred CCC-cCCCCCEEEEEEecCCCc---------ccHHHHHHHHHHHHHHHhCCCC--CcCccccCCeEEecCCcceee--cC
Confidence 777 999999999999996321 4677899999999999987532 225677889999888887766 76
Q ss_pred CCCcE--------EEEcCCCc-----c------------------ccCCcEEEEEE-e--CCEEEEEEEecCChHHH-HH
Q 013890 362 NVGDT--------VLFGDNDL-----A------------------SATHKFGTYWI-K--DGKVVGVFLESGTPEEN-KA 406 (434)
Q Consensus 362 ~~~~~--------~~~~~~~~-----~------------------~~~~~~~~~~~-~--~~~ilG~~~~g~~~~~~-~~ 406 (434)
++.+. +.....+. . ..+++|+|+++ + +++|||+|++|++++|+ +.
T Consensus 367 te~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~ 446 (499)
T PTZ00052 367 SSEAAIAKYGEDDIEEYLQEFNTLEIAAVHREKHERARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQG 446 (499)
T ss_pred CHHHHHHhcCCCCEEEEEeecccchhhccccccccccccccccccccCCceEEEEEecCCCCEEEEEEEECCCHHHHHHH
Confidence 64211 11110000 0 02578999877 2 69999999999999997 99
Q ss_pred HHHHHHcCCCCCChhhhhccCCCccccC
Q 013890 407 IAKVARVQPSVESLDVLKNEGLSFASKI 434 (434)
Q Consensus 407 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 434 (434)
++.||++++|++||..+..+.++++|.+
T Consensus 447 ~~~ai~~~~t~~~l~~~~~~hPt~sE~~ 474 (499)
T PTZ00052 447 FSLALKLGAKKSDFDSMIGIHPTDAEVF 474 (499)
T ss_pred HHHHHHCCCCHHHHhcccccCCCCchhh
Confidence 9999999999999999999999999853
No 38
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=7.7e-47 Score=371.77 Aligned_cols=398 Identities=22% Similarity=0.271 Sum_probs=283.2
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCCccccccCCCCC-C---CCCCcceecCC---C-
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGT-A---RLPGFHVCVGS---G- 73 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~---~- 73 (434)
.|||+|||||+||++||.+|+++|++ |+|||++...+ ...|.+++.++..... . ....+...... .
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~---v~lie~~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 77 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLK---VALVEKEYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDW 77 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCH
Confidence 38999999999999999999999987 99999943211 1123334333322110 0 00000000000 0
Q ss_pred -------------CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCC-cEEEeceEEEccCCCcccccCCCCCCCCC
Q 013890 74 -------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGSTVLRLTDFGVEGADA 139 (434)
Q Consensus 74 -------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~lilAtG~~~~~p~~~~i~g~~~ 139 (434)
.......++++.+++++.+ .+..++.....+...++ .++.||++|||||++|+.|+.+ .+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~--~~~~~ 154 (461)
T TIGR01350 78 EKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKG-EAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLPGP--FDFDG 154 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCC--CCCCC
Confidence 0001123445678999987 45545433333443343 4799999999999999877742 12222
Q ss_pred CCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcC
Q 013890 140 KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKG 219 (434)
Q Consensus 140 ~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 219 (434)
..++ +..+...+. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++.|
T Consensus 155 ~~~~---~~~~~~~~~-----~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~g 225 (461)
T TIGR01350 155 EVVI---TSTGALNLK-----EVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG-EDAEVSKVVAKALKKKG 225 (461)
T ss_pred ceEE---cchHHhccc-----cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC-CCHHHHHHHHHHHHHcC
Confidence 2233 333433221 14789999999999999999999999999999999988875 78999999999999999
Q ss_pred cEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEEcCEEEEccCCccChh--hh-hccccc-cCCcEEeCCCCCCCCCceE
Q 013890 220 IKIIKGTVAVGFTTNADGEVNEVKLKDG--RTLEADIVVVGVGGRPLIS--LF-KGQVAE-NKGGIETDDFFKTSADDVY 293 (434)
Q Consensus 220 V~~~~~~~v~~i~~~~~g~~~~v~~~~g--~~i~~d~vv~a~G~~p~~~--~~-~~~~~~-~~g~i~vd~~~~t~~~~iy 293 (434)
|++++++.+.+++.+ ++.+ .+.+.+| +++++|.+++|+|++|+++ .+ ..++.. .+|+|.||+++||++|+||
T Consensus 226 i~i~~~~~v~~i~~~-~~~v-~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~Iy 303 (461)
T TIGR01350 226 VKILTNTKVTAVEKN-DDQV-VYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGIY 303 (461)
T ss_pred CEEEeCCEEEEEEEe-CCEE-EEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCEE
Confidence 999999999999863 3333 3566666 5799999999999999998 33 335555 5688999999999999999
Q ss_pred EecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCc------EE
Q 013890 294 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD------TV 367 (434)
Q Consensus 294 a~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~------~~ 367 (434)
|+|||+..+ ..+..|..||+.+|.||.+.... ..++...|...+..++++.+ |.++.+ .+
T Consensus 304 aiGD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~--~~~~~~~~~~~~~~~~~a~v--G~~~~~a~~~g~~~ 369 (461)
T TIGR01350 304 AIGDVIGGP----------MLAHVASHEGIVAAENIAGKEPA--PIDYDAVPSCIYTDPEVASV--GLTEEQAKEAGYDV 369 (461)
T ss_pred EeeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCC--CCCCCCCCeEEecCCceEEE--eCCHHHHHhCCCCe
Confidence 999999754 45778999999999999875321 24556677776666665544 665421 11
Q ss_pred EE-----cCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890 368 LF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK 433 (434)
Q Consensus 368 ~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 433 (434)
.. .+..+. ....+|+|+++ ++++|||+|++|++++++ +.++.||++++|++||..+..+.++|++.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~g~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~ 446 (461)
T TIGR01350 370 KIGKFPFAANGKALALGETDGFVKIIADKKTGEILGAHIIGPHATELISEAVLAMELELTVEELAKTIHPHPTLSEA 446 (461)
T ss_pred EEEEEeCccchHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCCHHHH
Confidence 11 111111 24577898887 479999999999999887 99999999999999999998899998763
No 39
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=100.00 E-value=2.8e-45 Score=356.95 Aligned_cols=391 Identities=18% Similarity=0.274 Sum_probs=294.7
Q ss_pred HHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCC-HhHHHHCCcEEEcCCeEEE
Q 013890 19 YAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLL-PEWYKEKGIELILSTEIVR 97 (434)
Q Consensus 19 ~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~v~~ 97 (434)
+||.+|++++ ++.+|+|||+++.+.|..+.+.. +..... . .+. ...... .+++.+.+++++.+++|+.
T Consensus 1 saA~~l~~~~-~~~~Vtlid~~~~~~~~~~~l~~-~~~g~~-~-~~~-------~~~~~~~~~~~~~~gv~~~~~~~V~~ 69 (427)
T TIGR03385 1 SAASRVRRLD-KESDIIVFEKTEDVSFANCGLPY-VIGGVI-D-DRN-------KLLAYTPEVFIKKRGIDVKTNHEVIE 69 (427)
T ss_pred CHHHHHHhhC-CCCcEEEEEcCCceeEEcCCCCe-Eecccc-C-CHH-------HcccCCHHHHHHhcCCeEEecCEEEE
Confidence 4788898864 35679999999876554322211 000000 0 000 001122 3455888999988889999
Q ss_pred EeCCCCEEEcCC---CcEEE--eceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCC
Q 013890 98 ADIASKTLLSAT---GLIFK--YQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGG 172 (434)
Q Consensus 98 i~~~~~~v~~~~---~~~~~--~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g 172 (434)
++++++++.+.+ +..+. ||+||||||++|..|+ ++|.+..++++.+++.++..+.+.+....+++++|||+|
T Consensus 70 id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~~~~---i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG 146 (427)
T TIGR03385 70 VNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPN---IEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGG 146 (427)
T ss_pred EECCCCEEEEEECCCCCEEecCCCEEEECCCCCCCCCC---CCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCC
Confidence 999888877643 35677 9999999999998887 566665778999999998888888765568999999999
Q ss_pred HHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEc
Q 013890 173 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEA 252 (434)
Q Consensus 173 ~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~ 252 (434)
++|+|+|..|.+.|.+|+++++.+.++...+++++.+.+.+.+++.||++++++.+.++.. ++.+ +.+.+|+++++
T Consensus 147 ~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~~~--v~~~~g~~i~~ 222 (427)
T TIGR03385 147 YIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEG--EERV--KVFTSGGVYQA 222 (427)
T ss_pred HHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEec--CCCE--EEEcCCCEEEe
Confidence 9999999999999999999999988754447899999999999999999999999999976 3433 45678889999
Q ss_pred CEEEEccCCccChhhhhc-cccc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHh
Q 013890 253 DIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM 330 (434)
Q Consensus 253 d~vv~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 330 (434)
|.+++|+|++|++++++. ++.. .+|+|.||+++||+.|+|||+|||+..+....+.+...+++..|.+||+++|+||.
T Consensus 223 D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~ 302 (427)
T TIGR03385 223 DMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIA 302 (427)
T ss_pred CEEEECCCccCCHHHHHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhc
Confidence 999999999999988754 5665 56899999999999999999999998766544444344678899999999999998
Q ss_pred ccCCCCcccCCC-CCCeeEEeecCcceEEeecCCCc------EE---EEc--CCCc--cccCCcEEEEEE--eCCEEEEE
Q 013890 331 ATEGGKTVTGYD-YLPYFYSRAFDLSWQFYGDNVGD------TV---LFG--DNDL--ASATHKFGTYWI--KDGKVVGV 394 (434)
Q Consensus 331 ~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~G~~~~~------~~---~~~--~~~~--~~~~~~~~~~~~--~~~~ilG~ 394 (434)
+.. ..|. ..+.....+++..+..+|.++.+ .+ .+. +... .....+|+|+++ ++++|||+
T Consensus 303 g~~-----~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~ 377 (427)
T TIGR03385 303 GND-----IEFKGVLGTNITKFFDLTIASTGVTENEAKKLNIDYKTVFVKAKTHANYYPGNSPLHLKLIYEKDTRRILGA 377 (427)
T ss_pred CCC-----CCCCCcceeeEEEEcCeEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCeEEEE
Confidence 752 3343 22333455566677777876531 11 111 1111 123567889888 47999999
Q ss_pred EEecCC-hHHH-HHHHHHHHcCCCCCChhhhhc-cCCCccc
Q 013890 395 FLESGT-PEEN-KAIAKVARVQPSVESLDVLKN-EGLSFAS 432 (434)
Q Consensus 395 ~~~g~~-~~~~-~~~~~~i~~~~~~~~~~~~~~-~~~~~~~ 432 (434)
|++|+. ++|+ +.++.+|++++|++||..+.- ..++|++
T Consensus 378 ~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~p~~~~ 418 (427)
T TIGR03385 378 QAVGKEGADKRIDVLAAAIMAGLTVKDLFFFELAYAPPYSR 418 (427)
T ss_pred EEEccccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCC
Confidence 999998 8886 999999999999999887663 3444554
No 40
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=6.5e-46 Score=328.31 Aligned_cols=398 Identities=24% Similarity=0.306 Sum_probs=299.3
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC----CCCCccccccCCCCCC------CCCCcceecCCC
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY----ERPALSKAYLFPEGTA------RLPGFHVCVGSG 73 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~----~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 73 (434)
..||++|||+||+|..||..+++.|++ -+++|++...+. ..|.+|+.++...... .+..........
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlk---TacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~ 114 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLK---TACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSV 114 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcce---eEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccce
Confidence 359999999999999999999999998 789999765322 2255566666544211 011011111000
Q ss_pred -----------------CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCC--cEEEeceEEEccCCCcccccCCCC
Q 013890 74 -----------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVLRLTDFGV 134 (434)
Q Consensus 74 -----------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lilAtG~~~~~p~~~~i 134 (434)
....+...+++.++++..+.. .-+++..-.+.-.|+ ..+.++++|+|||+.-. +.||+
T Consensus 115 ~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~g-sf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~--~~PGI 191 (506)
T KOG1335|consen 115 SLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFG-SFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVT--PFPGI 191 (506)
T ss_pred ecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeE-eecCCceEEEeccCCCceEEeeeeEEEEeCCccC--CCCCe
Confidence 011233445667888888733 223333333433444 57899999999999532 21123
Q ss_pred CCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHH
Q 013890 135 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY 214 (434)
Q Consensus 135 ~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (434)
. .+.+.+.+......+.. -|++++|+|+|++|+|++.-+.++|.+||+++-.+.+.+. +|.++++.+++.
T Consensus 192 ~-IDekkIVSStgALsL~~--------vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~-mD~Eisk~~qr~ 261 (506)
T KOG1335|consen 192 T-IDEKKIVSSTGALSLKE--------VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV-MDGEISKAFQRV 261 (506)
T ss_pred E-ecCceEEecCCccchhh--------CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc-cCHHHHHHHHHH
Confidence 2 24455665544333333 4899999999999999999999999999999999999887 899999999999
Q ss_pred HHHcCcEEEcCCeEEEEEecCCCcEEEEEeCC---C--cEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCCCC
Q 013890 215 YANKGIKIIKGTVAVGFTTNADGEVNEVKLKD---G--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFF 285 (434)
Q Consensus 215 l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~---g--~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~ 285 (434)
|.+.|++|++++.|...+.+.||.+ .+.+.+ + ++++||.+++++|++|.+.-+ +.++.. ..+++.||.++
T Consensus 262 L~kQgikF~l~tkv~~a~~~~dg~v-~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f 340 (506)
T KOG1335|consen 262 LQKQGIKFKLGTKVTSATRNGDGPV-EIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRF 340 (506)
T ss_pred HHhcCceeEeccEEEEeeccCCCce-EEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccc
Confidence 9999999999999999998778743 454432 2 479999999999999999855 446666 67899999999
Q ss_pred CCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCC--
Q 013890 286 KTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV-- 363 (434)
Q Consensus 286 ~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~-- 363 (434)
+|.+|+||++||+...|+. ...|..||-.+.+.|.+... ...|..+|.+.++.|+++|+ |.++
T Consensus 341 ~t~vP~i~~IGDv~~gpML----------AhkAeeegI~~VE~i~g~~~---hv~ynciP~v~ythPEvawV--G~TEeq 405 (506)
T KOG1335|consen 341 QTKVPHIYAIGDVTLGPML----------AHKAEEEGIAAVEGIAGGHG---HVDYNCIPSVVYTHPEVAWV--GKTEEQ 405 (506)
T ss_pred cccCCceEEecccCCcchh----------hhhhhhhchhheeeecccCc---ccccCCCCceeecccceeee--ccchhh
Confidence 9999999999999998864 55577899988888887643 38999999999999999999 6655
Q ss_pred ----CcEEEEcCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCC
Q 013890 364 ----GDTVLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGL 428 (434)
Q Consensus 364 ----~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~ 428 (434)
+..+..|..+.. .+.++|+|+.. ++++|||+||+|++|.|+ +..++||..+.+.+|.++.--+.+
T Consensus 406 lkeegi~y~vgkfpF~aNsRaktn~d~eg~vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDvarvchaHP 485 (506)
T KOG1335|consen 406 LKEEGIKYKVGKFPFSANSRAKTNNDTEGFVKVLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVARVCHAHP 485 (506)
T ss_pred HHhcCcceEeeeccccccchhhccCCccceeEEEecCCCCcEEEEEEecCCHHHHHHHHHHHHHhCccHHHHhhccCCCC
Confidence 333444544433 24678999777 799999999999999997 999999999999999999888888
Q ss_pred Ccccc
Q 013890 429 SFASK 433 (434)
Q Consensus 429 ~~~~~ 433 (434)
+.-++
T Consensus 486 TlSEa 490 (506)
T KOG1335|consen 486 TLSEA 490 (506)
T ss_pred cHHHH
Confidence 77654
No 41
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=100.00 E-value=1.1e-44 Score=347.00 Aligned_cols=383 Identities=26% Similarity=0.412 Sum_probs=321.5
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..++||||.|++|..+..++.+...+...|+++-.++...|.|.+++..+-.......+ .....+|+++
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi-----------~l~~~dwy~~ 71 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDI-----------SLNRNDWYEE 71 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHH-----------hccchhhHHH
Confidence 46899999999999999999985434457999999999999998887655433332222 2456799999
Q ss_pred CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCC
Q 013890 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNG 164 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~ 164 (434)
++++++.+..++.||+.++.|+.+.|.++.||+||+||||.|+++| +||.+.++++..++.++...+.+.-+ ..+
T Consensus 72 ~~i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~P---iPG~~~~~v~~~R~i~D~~am~~~ar--~~~ 146 (793)
T COG1251 72 NGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILP---IPGSDLPGVFVYRTIDDVEAMLDCAR--NKK 146 (793)
T ss_pred cCcEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCccccccC---CCCCCCCCeeEEecHHHHHHHHHHHh--ccC
Confidence 9999999999999999999999999999999999999999999999 69999999999999999999988843 456
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe
Q 013890 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL 244 (434)
Q Consensus 165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~ 244 (434)
+.+|||+|..|+|+|..|...|.+++|++-.+.++.+.+|+.....+++.+++.|++++++...+++.. ++.+.++.+
T Consensus 147 ~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~ 224 (793)
T COG1251 147 KAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRF 224 (793)
T ss_pred CcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhc--CcceeeEee
Confidence 789999999999999999999999999999999998889999999999999999999999998888876 778889999
Q ss_pred CCCcEEEcCEEEEccCCccChhhhhcc-ccccCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHH
Q 013890 245 KDGRTLEADIVVVGVGGRPLISLFKGQ-VAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAE 323 (434)
Q Consensus 245 ~~g~~i~~d~vv~a~G~~p~~~~~~~~-~~~~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~ 323 (434)
+||+.+++|+||+|+|++||.++.... +..++ +|.||++|||++|+|||+|+|+.+....+ .++..+..|++
T Consensus 225 ~DG~~i~ad~VV~a~GIrPn~ela~~aGlavnr-GIvvnd~mqTsdpdIYAvGEcae~~g~~y------GLVaP~yeq~~ 297 (793)
T COG1251 225 ADGTEIPADLVVMAVGIRPNDELAKEAGLAVNR-GIVVNDYMQTSDPDIYAVGECAEHRGKVY------GLVAPLYEQAK 297 (793)
T ss_pred cCCCcccceeEEEecccccccHhHHhcCcCcCC-CeeecccccccCCCeeehhhHHHhcCccc------eehhHHHHHHH
Confidence 999999999999999999999998764 54444 89999999999999999999998765533 56778899999
Q ss_pred HHHHHHhccCCCCcccCC-CCCCeeEEeecCcceEEeecCC----CcEEEEcCCCccccCCcEEEEEEeCCEEEEEEEec
Q 013890 324 QAVKTIMATEGGKTVTGY-DYLPYFYSRAFDLSWQFYGDNV----GDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLES 398 (434)
Q Consensus 324 ~aa~~i~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~G~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g 398 (434)
++|+++.+...+ .| ...+...-+..+..+...|.-. ...+.+.|.. ...|.|+.+++++|+|+.++|
T Consensus 298 v~a~hl~~~~~~----~y~gsv~stkLKv~Gvdl~S~GD~~e~~~~~~iv~~D~~----~~iYKrlvL~dd~IvgavL~G 369 (793)
T COG1251 298 VLADHLCGGEAE----AYEGSVTSTKLKVSGVDVFSAGDFQETEGAESIVFRDEQ----RGIYKKLVLKDDKIVGAVLYG 369 (793)
T ss_pred HHHHHhccCccc----ccccccchhhhcccccceeeccchhhcCCCceEEEeccc----ccceeEEEEeCCeEEEEEEEe
Confidence 999999987543 22 2334444455666665556332 2244454544 457889999999999999999
Q ss_pred CChHHHHHHHHHHHcCCCCCChh
Q 013890 399 GTPEENKAIAKVARVQPSVESLD 421 (434)
Q Consensus 399 ~~~~~~~~~~~~i~~~~~~~~~~ 421 (434)
+.++-..+-.+|..+.+++++.
T Consensus 370 -Dt~d~~~l~~li~~~~~~se~r 391 (793)
T COG1251 370 -DTSDGGWLLDLILKGADISEIR 391 (793)
T ss_pred -ecccchHHHHHHhcCCCccccc
Confidence 4677788888999999887655
No 42
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.8e-44 Score=314.04 Aligned_cols=398 Identities=18% Similarity=0.226 Sum_probs=292.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCCcccc-ccCCCCC----C----------CCCC
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKA-YLFPEGT----A----------RLPG 65 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~-~~~~~~~----~----------~~~~ 65 (434)
+.||+.|||||.+|+++|+.+++.|.+ +.|+|..-..+ ..+.+.++. +|..... . ..+.
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAk---v~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~ 95 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAK---VALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGS 95 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCce---EEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccC
Confidence 469999999999999999999999987 99999873211 112222232 2222110 0 0111
Q ss_pred cceecCCCC--------CCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCCc--EEEeceEEEccCCCcccccCCCCC
Q 013890 66 FHVCVGSGG--------ERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVLRLTDFGVE 135 (434)
Q Consensus 66 ~~~~~~~~~--------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~lilAtG~~~~~p~~~~i~ 135 (434)
|.+..-... ...++..+.+.++.++.+ +..-+++.+-.|...|+. .+++++++||||++|.+|+ ||
T Consensus 96 fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G-~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~Pn---Ip 171 (478)
T KOG0405|consen 96 FDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEG-RARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPN---IP 171 (478)
T ss_pred CcHHHHHhhhhHHHHHHHHHHHhhccccceeEEee-eEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCCC---CC
Confidence 111000000 011223344567888888 444445555566666663 3789999999999999997 56
Q ss_pred CCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHH
Q 013890 136 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY 215 (434)
Q Consensus 136 g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l 215 (434)
|.+. -.+.+.+.+++. .|+|++|+|+|++++|+|..++.+|.+++++.|.+.++.. ||+.+++.+.+.+
T Consensus 172 G~E~--gidSDgff~Lee--------~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~-FD~~i~~~v~~~~ 240 (478)
T KOG0405|consen 172 GAEL--GIDSDGFFDLEE--------QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRG-FDEMISDLVTEHL 240 (478)
T ss_pred chhh--ccccccccchhh--------cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcc-hhHHHHHHHHHHh
Confidence 6431 112222222222 5899999999999999999999999999999999999987 8999999999999
Q ss_pred HHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCCCCCCCCCc
Q 013890 216 ANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADD 291 (434)
Q Consensus 216 ~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~ 291 (434)
+..||++|.++.++++....+|.. .+.+..|+...+|.++||+|+.|++.-+ +.++.. .+|.|.||++.+||+|+
T Consensus 241 ~~~ginvh~~s~~~~v~K~~~g~~-~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~ 319 (478)
T KOG0405|consen 241 EGRGINVHKNSSVTKVIKTDDGLE-LVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPS 319 (478)
T ss_pred hhcceeecccccceeeeecCCCce-EEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCCc
Confidence 999999999999999987666644 3445566555699999999999999755 457777 67899999999999999
Q ss_pred eEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCc------
Q 013890 292 VYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD------ 365 (434)
Q Consensus 292 iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~------ 365 (434)
||++||+++-- .+...|+.+|+..++.+++.... ...+|..+|.+++..|.+..+ |+++.+
T Consensus 320 I~avGDv~gk~----------~LTPVAiaagr~la~rlF~~~~~-~kldY~nVp~vVFshP~igtV--GLtE~EAiekyg 386 (478)
T KOG0405|consen 320 IWAVGDVTGKI----------NLTPVAIAAGRKLANRLFGGGKD-TKLDYENVPCVVFSHPPIGTV--GLTEEEAIEKYG 386 (478)
T ss_pred eEEeccccCcE----------ecchHHHhhhhhHHHHhhcCCCC-CccccccCceEEEecCCcccc--cCCHHHHHHHhC
Confidence 99999999854 45667889999999999984322 237899999999998988766 776532
Q ss_pred ---EEEE-cCCCcc------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013890 366 ---TVLF-GDNDLA------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 366 ---~~~~-~~~~~~------~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 432 (434)
...+ ....+. .....+.|+++ ++.+++|+|++|+.+.|+ +.++.|+.+|.|..||++...-.++-|+
T Consensus 387 ~~~i~vy~s~F~pm~~a~~~~k~kt~mKlvc~~~~eKVvG~hm~G~~s~EilQGf~VAvKmGaTKadFD~tVaIHPTSAE 466 (478)
T KOG0405|consen 387 KGDIKVYTSKFNPMKYAMSGRKEKTLMKLVCAGKSEKVVGVHMCGDDSAEILQGFAVAVKMGATKADFDSTVAIHPTSAE 466 (478)
T ss_pred ccceEEEecCCchhHhHhhcCCcceEEEEEEecCCCcEEEEEEecCCcHHHHhhhhhheecCcchhhhccceeecCCCHH
Confidence 2111 111111 12345667777 899999999999999997 9999999999999999988877777665
Q ss_pred c
Q 013890 433 K 433 (434)
Q Consensus 433 ~ 433 (434)
.
T Consensus 467 E 467 (478)
T KOG0405|consen 467 E 467 (478)
T ss_pred H
Confidence 3
No 43
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=6.9e-42 Score=317.37 Aligned_cols=312 Identities=26% Similarity=0.369 Sum_probs=249.3
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
++++||||||.+|+.+|..|.+.. ++.+|++||+.+++.|. |.+.. .....++.-. ....+...++.
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~-~~~~itLVd~~~~hl~~-plL~e-----va~g~l~~~~------i~~p~~~~~~~ 69 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL-PDVEITLVDRRDYHLFT-PLLYE-----VATGTLSESE------IAIPLRALLRK 69 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC-CCCcEEEEeCCCccccc-hhhhh-----hhcCCCChhh------eeccHHHHhcc
Confidence 478999999999999999999975 34569999999987664 22211 1111111000 01345566664
Q ss_pred CC-cEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHh---
Q 013890 85 KG-IELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA--- 160 (434)
Q Consensus 85 ~~-v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~--- 160 (434)
.+ ++++++ +|++||+++++|.+.++..+.||+||+|+|+.+..+. ++|.. ...+.+++.+++.++++.+..
T Consensus 70 ~~~v~~~~~-~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~fg---i~G~~-E~a~~lks~edA~~ir~~l~~~fe 144 (405)
T COG1252 70 SGNVQFVQG-EVTDIDRDAKKVTLADLGEISYDYLVVALGSETNYFG---IPGAA-EYAFGLKTLEDALRLRRHLLEAFE 144 (405)
T ss_pred cCceEEEEE-EEEEEcccCCEEEeCCCccccccEEEEecCCcCCcCC---CCCHH-HhCCCCCCHHHHHHHHHHHHHHHH
Confidence 54 999997 9999999999999999888999999999999997666 56643 566788999999988887641
Q ss_pred ----cCC----CcEEEECCCHHHHHHHHHHHHC-------------CCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcC
Q 013890 161 ----KKN----GKAVVVGGGYIGLELSAALKIN-------------NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKG 219 (434)
Q Consensus 161 ----~~~----~~vvVvG~g~~g~e~a~~l~~~-------------g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 219 (434)
... .+++|+|+|++|+|+|.+|.++ ..+|+++++.+++++. +++++++..++.|++.|
T Consensus 145 ~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~-~~~~l~~~a~~~L~~~G 223 (405)
T COG1252 145 KASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPM-FPPKLSKYAERALEKLG 223 (405)
T ss_pred HhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccC-CCHHHHHHHHHHHHHCC
Confidence 111 2689999999999999988754 1389999999999997 89999999999999999
Q ss_pred cEEEcCCeEEEEEecCCCcEEEEEeCCCc-EEEcCEEEEccCCccChhhhh-ccccc-cCCcEEeCCCCCC-CCCceEEe
Q 013890 220 IKIIKGTVAVGFTTNADGEVNEVKLKDGR-TLEADIVVVGVGGRPLISLFK-GQVAE-NKGGIETDDFFKT-SADDVYAV 295 (434)
Q Consensus 220 V~~~~~~~v~~i~~~~~g~~~~v~~~~g~-~i~~d~vv~a~G~~p~~~~~~-~~~~~-~~g~i~vd~~~~t-~~~~iya~ 295 (434)
|++++++.|++++. + .|++++|. +|+++.+|||+|.+++...-+ .+.+. ..|++.||+++|+ ++|+|||+
T Consensus 224 V~v~l~~~Vt~v~~--~----~v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~ 297 (405)
T COG1252 224 VEVLLGTPVTEVTP--D----GVTLKDGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAA 297 (405)
T ss_pred CEEEcCCceEEECC--C----cEEEccCCeeEecCEEEEcCCCcCChhhhhcChhhhccCCCEEeCCCcccCCCCCeEEE
Confidence 99999999999986 3 47888887 499999999999999887665 35554 4699999999998 99999999
Q ss_pred cccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCC
Q 013890 296 GDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLP 345 (434)
Q Consensus 296 Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p 345 (434)
|||+...+. ...++.+..|.+||+.+|+||.+...++++.+|.+..
T Consensus 298 GD~A~~~~~----~p~P~tAQ~A~Qqg~~~a~ni~~~l~g~~l~~f~y~~ 343 (405)
T COG1252 298 GDCAAVIDP----RPVPPTAQAAHQQGEYAAKNIKARLKGKPLKPFKYKD 343 (405)
T ss_pred eccccCCCC----CCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCCcccc
Confidence 999987653 2233678899999999999999998887667666543
No 44
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=3e-40 Score=320.01 Aligned_cols=301 Identities=21% Similarity=0.283 Sum_probs=232.9
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHH
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
.+++|||||||+||+.+|..|.+.+. +|+|||+++.+.|. +.+.. +...... .... .......+.
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~---~ItlI~~~~~~~~~-~~l~~-~~~g~~~--~~~~--------~~~~~~~~~ 73 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKY---NITVISPRNHMLFT-PLLPQ-TTTGTLE--FRSI--------CEPVRPALA 73 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCC---eEEEEcCCCCcchh-hhHHH-hcccCCC--hHHh--------HHHHHHHhc
Confidence 45799999999999999998865444 49999999876653 32221 1111000 0000 012234455
Q ss_pred HCCcEEEcCCeEEEEeCCCCEEEc----------CCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHH
Q 013890 84 EKGIELILSTEIVRADIASKTLLS----------ATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADK 153 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~----------~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~ 153 (434)
..+++++.+ +|+.||++++.|.+ .++.++.||+||||||+.|..++ +||.. ..++.+++..++..
T Consensus 74 ~~~~~~i~~-~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~---ipG~~-e~~~~~~~~~~a~~ 148 (424)
T PTZ00318 74 KLPNRYLRA-VVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFN---IPGVE-ERAFFLKEVNHARG 148 (424)
T ss_pred cCCeEEEEE-EEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCC---CCCHH-HcCCCCCCHHHHHH
Confidence 678888886 99999999998877 45668999999999999998777 56643 35667788888887
Q ss_pred HHHHHHhc---------------CCCcEEEECCCHHHHHHHHHHHH--------------CCCeEEEEeeCCccCCcccC
Q 013890 154 LVEAIKAK---------------KNGKAVVVGGGYIGLELSAALKI--------------NNIDVSMVYPEPWCMPRLFT 204 (434)
Q Consensus 154 l~~~l~~~---------------~~~~vvVvG~g~~g~e~a~~l~~--------------~g~~v~~~~~~~~~~~~~~~ 204 (434)
+.+.+.+. ..++++|||+|++|+|+|..|.. .+.+|+++++.+.+++. ++
T Consensus 149 ~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~-~~ 227 (424)
T PTZ00318 149 IRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS-FD 227 (424)
T ss_pred HHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc-CC
Confidence 76655321 12489999999999999999875 37899999999998885 79
Q ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhhhccccc-cCCcEEeCC
Q 013890 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDD 283 (434)
Q Consensus 205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~~~~~~-~~g~i~vd~ 283 (434)
+++.+.+.+.|+++||++++++.|.++.. + .+.+++|+++++|.+|+++|.+|+..+...++.. ++|+|.||+
T Consensus 228 ~~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~----~v~~~~g~~i~~d~vi~~~G~~~~~~~~~~~l~~~~~G~I~Vd~ 301 (424)
T PTZ00318 228 QALRKYGQRRLRRLGVDIRTKTAVKEVLD--K----EVVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGRISVDD 301 (424)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeEEEEeC--C----EEEECCCCEEEccEEEEccCCCCcchhhhcCCcccCCCcEEeCC
Confidence 99999999999999999999999999975 2 4678899999999999999999985333445555 568999999
Q ss_pred CCC-CCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCC
Q 013890 284 FFK-TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGK 336 (434)
Q Consensus 284 ~~~-t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 336 (434)
++| +++|||||+|||+..+.. ...+++..|..||+.+|+||.+...++
T Consensus 302 ~l~~~~~~~IfAiGD~a~~~~~-----~~~~~~~~A~~qg~~~A~ni~~~l~g~ 350 (424)
T PTZ00318 302 HLRVKPIPNVFALGDCAANEER-----PLPTLAQVASQQGVYLAKEFNNELKGK 350 (424)
T ss_pred CcccCCCCCEEEEeccccCCCC-----CCCCchHHHHHHHHHHHHHHHHHhcCC
Confidence 999 499999999999986432 122578889999999999999877654
No 45
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=1.1e-38 Score=304.54 Aligned_cols=306 Identities=23% Similarity=0.309 Sum_probs=236.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHCC
Q 013890 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 86 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (434)
+|||||||+||+.+|..|+++..+..+|+|||+++.+.|... +. .+.... .+. ........+++++.+
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~-~~-~~~~g~----~~~------~~~~~~~~~~~~~~g 68 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGM-LP-GMIAGH----YSL------DEIRIDLRRLARQAG 68 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccch-hh-HHHhee----CCH------HHhcccHHHHHHhcC
Confidence 489999999999999999765334567999999988776532 11 111110 000 000123456677789
Q ss_pred cEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHh-----c
Q 013890 87 IELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA-----K 161 (434)
Q Consensus 87 v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~-----~ 161 (434)
++++.+ +|+.+|++++.|.+.+++++.||+||||||+.|..|+ ++| ...+++.+++.+++....+.+.. .
T Consensus 69 v~~~~~-~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~---i~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (364)
T TIGR03169 69 ARFVIA-EATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPLSG---VEG-AADLAVPVKPIENFLARWEALLESADAPP 143 (364)
T ss_pred CEEEEE-EEEEEecccCEEEECCCCcccccEEEEccCCCCCCCC---CCc-ccccccccCCHHHHHHHHHHHHHHHhcCC
Confidence 999987 8999999999999999988999999999999998887 466 34667777888777663332321 1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHH----CC--CeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecC
Q 013890 162 KNGKAVVVGGGYIGLELSAALKI----NN--IDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA 235 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~l~~----~g--~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~ 235 (434)
..++++|+|+|++|+|+|..|.+ .| .+|+++ +.+.+++. +++++.+.+.+.+++.||++++++.+.+++.
T Consensus 144 ~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~-- 219 (364)
T TIGR03169 144 GTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPG-FPAKVRRLVLRLLARRGIEVHEGAPVTRGPD-- 219 (364)
T ss_pred CCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccccc-CCHHHHHHHHHHHHHCCCEEEeCCeeEEEcC--
Confidence 35799999999999999999975 34 589999 56666665 7889999999999999999999999998864
Q ss_pred CCcEEEEEeCCCcEEEcCEEEEccCCccChhhhhccccc-cCCcEEeCCCCCC-CCCceEEecccccccccccCcccccc
Q 013890 236 DGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKT-SADDVYAVGDVATFPMKLYREMRRVE 313 (434)
Q Consensus 236 ~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t-~~~~iya~Gd~~~~~~~~~~~~~~~~ 313 (434)
+ .+.+.+|+++++|.+++|+|.+|+..+...++.. .+|++.||+++|| ++|+|||+|||+..+... ..+
T Consensus 220 ~----~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~-----~~~ 290 (364)
T TIGR03169 220 G----ALILADGRTLPADAILWATGARAPPWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAP-----RPK 290 (364)
T ss_pred C----eEEeCCCCEEecCEEEEccCCChhhHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCC-----CCC
Confidence 2 4677888899999999999999997666666665 5689999999998 999999999999765321 124
Q ss_pred cHHHHHHHHHHHHHHHhccCCCCcccCCC
Q 013890 314 HVDHARKSAEQAVKTIMATEGGKTVTGYD 342 (434)
Q Consensus 314 ~~~~A~~~g~~aa~~i~~~~~~~~~~~~~ 342 (434)
.+..|..||+++|+||.....+.++..|.
T Consensus 291 ~~~~A~~~g~~~a~ni~~~l~g~~~~~~~ 319 (364)
T TIGR03169 291 AGVYAVRQAPILAANLRASLRGQPLRPFR 319 (364)
T ss_pred chHHHHHhHHHHHHHHHHHhcCCCCCCCc
Confidence 56779999999999999887765544443
No 46
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-38 Score=275.20 Aligned_cols=399 Identities=21% Similarity=0.233 Sum_probs=272.5
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCC-----------CCccccccCCCC-----CCCCCCcc
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYER-----------PALSKAYLFPEG-----TARLPGFH 67 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~-----------~~~~~~~~~~~~-----~~~~~~~~ 67 (434)
..||++|||||.+||+||.+++..|.+ |.++|--...|... .++++.+++... .+.-..|.
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~k---V~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyG 94 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAK---VACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYG 94 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCc---EEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhC
Confidence 469999999999999999999999987 88877543322110 112222222211 00000111
Q ss_pred eecCCCCCCCCHhH--------HHHCC----cEEEcCCeEEEEeC-----CCCEEEc--CCC--cEEEeceEEEccCCCc
Q 013890 68 VCVGSGGERLLPEW--------YKEKG----IELILSTEIVRADI-----ASKTLLS--ATG--LIFKYQILVIATGSTV 126 (434)
Q Consensus 68 ~~~~~~~~~~~~~~--------~~~~~----v~~~~~~~v~~i~~-----~~~~v~~--~~~--~~~~~d~lilAtG~~~ 126 (434)
+.......+..... ....+ ++++. ..|.-++. +.+++.. .++ +.+.++.++||||.+|
T Consensus 95 W~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~Lre-KkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RP 173 (503)
T KOG4716|consen 95 WNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLRE-KKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRP 173 (503)
T ss_pred CCCccccccccHHHHHHHHHHHhhhccceEEEEecc-ceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCC
Confidence 11100001111111 11111 12221 12332221 1223322 222 4688999999999999
Q ss_pred ccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHH
Q 013890 127 LRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTAD 206 (434)
Q Consensus 127 ~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~ 206 (434)
+.|. |||...- -++++++..... .|.+.+|||+|++++|+|.+|+..|.+|+++.|+- ++. .||.+
T Consensus 174 rYp~---IpG~~Ey-~ITSDDlFsl~~--------~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI-~Lr-GFDqd 239 (503)
T KOG4716|consen 174 RYPD---IPGAKEY-GITSDDLFSLPY--------EPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSI-LLR-GFDQD 239 (503)
T ss_pred CCCC---CCCceee-eecccccccccC--------CCCceEEEccceeeeehhhhHhhcCCCcEEEEEEe-ecc-cccHH
Confidence 9888 5664311 223333332221 47788999999999999999999999999999874 333 38999
Q ss_pred HHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC---CCc--EEEcCEEEEccCCccChhhh---hccccc--cC
Q 013890 207 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK---DGR--TLEADIVVVGVGGRPLISLF---KGQVAE--NK 276 (434)
Q Consensus 207 ~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~---~g~--~i~~d~vv~a~G~~p~~~~~---~~~~~~--~~ 276 (434)
++..+.+.++++||+|...+.+..++.-+++.. .|... .++ +-++|.|+||+|+.+.++-+ +.++.. ..
T Consensus 240 mae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks 318 (503)
T KOG4716|consen 240 MAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKS 318 (503)
T ss_pred HHHHHHHHHHHhCCceeecccceeeeeccCCcE-EEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccC
Confidence 999999999999999999988888887667752 33322 222 45789999999999998754 346655 46
Q ss_pred CcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcce
Q 013890 277 GGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSW 356 (434)
Q Consensus 277 g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~ 356 (434)
|.|.||+.-+||+|+|||+||+..... ++...|+..|+..|+.+++... ...+|..+|+.+++.+++..
T Consensus 319 ~KI~v~~~e~t~vp~vyAvGDIl~~kp---------ELTPvAIqsGrlLa~Rlf~gs~--q~~dy~~V~TTVFTPLEy~c 387 (503)
T KOG4716|consen 319 GKIPVDDEEATNVPYVYAVGDILEDKP---------ELTPVAIQSGRLLARRLFAGST--QLMDYDDVATTVFTPLEYGC 387 (503)
T ss_pred CccccChHHhcCCCceEEecceecCCc---------ccchhhhhhchHHHHHHhcCcc--eeeeccCCceeeecchhccc
Confidence 789999999999999999999997543 6677899999999999987654 35899999998888777665
Q ss_pred EEeecCCCc---------EEEEcCCCc--------cccCCcEEEEEE---eCCEEEEEEEecCChHHH-HHHHHHHHcCC
Q 013890 357 QFYGDNVGD---------TVLFGDNDL--------ASATHKFGTYWI---KDGKVVGVFLESGTPEEN-KAIAKVARVQP 415 (434)
Q Consensus 357 ~~~G~~~~~---------~~~~~~~~~--------~~~~~~~~~~~~---~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~ 415 (434)
. |+++.+ ...+...-. .....+|.|.++ .+.||+|.|++||+|+|+ +.++.|++-++
T Consensus 388 ~--GlsEE~Ai~k~g~dnievfH~~f~P~E~~ipqrd~~~CY~K~vc~r~~~qkv~G~H~lgPnAgEV~QGfaaAlk~gl 465 (503)
T KOG4716|consen 388 V--GLSEEDAIEKYGEDNIEVFHSYFKPLEYTIPQRDVRHCYLKAVCERDEDQKVLGLHILGPNAGEVIQGFAAALKCGL 465 (503)
T ss_pred c--CCCHHHHHHHhCcccEEEeeccccceEEEcccccCCceEEEEeecccCCceEEEEEEecCchhHHHHHHHHHHHhcc
Confidence 5 766521 122211110 123456777766 689999999999999998 99999999999
Q ss_pred CCCChhhhhccCCCccccC
Q 013890 416 SVESLDVLKNEGLSFASKI 434 (434)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~ 434 (434)
|..||++..--.+..|+-|
T Consensus 466 t~~~l~ntigIHPt~aE~F 484 (503)
T KOG4716|consen 466 TKKDLDNTIGIHPTTAEEF 484 (503)
T ss_pred cHHHHhhcccccccchhhe
Confidence 9999999888888777653
No 47
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=3.1e-37 Score=289.20 Aligned_cols=298 Identities=19% Similarity=0.172 Sum_probs=213.5
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCC-CCCCCCHhH
Q 013890 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGS-GGERLLPEW 81 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 81 (434)
.+.+||+||||||||++||..|+++|++ +++||+....+. +........+|+....... .....+.+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~---~~~ie~~~~gg~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQ---PVLITGMEKGGQ--------LTTTTEVENWPGDPNDLTGPLLMERMHEH 72 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCC---eEEEEeecCCCc--------eecCceECCCCCCCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999999986 899986532111 0000111122221110000 001223444
Q ss_pred HHHCCcEEEcCCeEEEEeCCCCEEEcC-CCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHh
Q 013890 82 YKEKGIELILSTEIVRADIASKTLLSA-TGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA 160 (434)
Q Consensus 82 ~~~~~v~~~~~~~v~~i~~~~~~v~~~-~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~ 160 (434)
....+.++..+ .+..++...+.+.+. +...+.||+||+|||+.|+.|+.++.+......++.+.......
T Consensus 73 ~~~~~~~~~~~-~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~~~~i~g~~~~~~~~v~~~~~~~~~~-------- 143 (321)
T PRK10262 73 ATKFETEIIFD-HINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFF-------- 143 (321)
T ss_pred HHHCCCEEEee-EEEEEEecCCeEEEEecCCEEEECEEEECCCCCCCCCCCCCHHHcCCCcEEEeecCCHHH--------
Confidence 55567777775 677788766654432 23468999999999999988874332222234555554433221
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEE
Q 013890 161 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVN 240 (434)
Q Consensus 161 ~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~ 240 (434)
..+++++|||+|++|+|+|..|++.+.+|+++++.+.+. .++.+.+.+.+.+++.||++++++.++++..+ ++.+.
T Consensus 144 ~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~---~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~-~~~~~ 219 (321)
T PRK10262 144 YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVT 219 (321)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC---CCHHHHHHHHhhccCCCeEEEeCCEEEEEEcC-CccEE
Confidence 158999999999999999999999999999999987653 35777888899999999999999999999862 33445
Q ss_pred EEEeCCC------cEEEcCEEEEccCCccChhhhhccccccCCcEEeCC-----CCCCCCCceEEecccccccccccCcc
Q 013890 241 EVKLKDG------RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDD-----FFKTSADDVYAVGDVATFPMKLYREM 309 (434)
Q Consensus 241 ~v~~~~g------~~i~~d~vv~a~G~~p~~~~~~~~~~~~~g~i~vd~-----~~~t~~~~iya~Gd~~~~~~~~~~~~ 309 (434)
.+++.++ +++++|.|++++|++|+..++..++..++|+|.||+ +++|++|+|||+|||++.+.
T Consensus 220 ~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~~l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~------ 293 (321)
T PRK10262 220 GVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIY------ 293 (321)
T ss_pred EEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhccccccCCEEEECCCCcccccccCCCCEEECeeccCCCc------
Confidence 5655432 379999999999999999988766666778999997 78999999999999997543
Q ss_pred cccccHHHHHHHHHHHHHHHhccC
Q 013890 310 RRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 310 ~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
+.+..|..+|..||..|...+
T Consensus 294 ---~~~~~A~~~g~~Aa~~~~~~l 314 (321)
T PRK10262 294 ---RQAITSAGTGCMAALDAERYL 314 (321)
T ss_pred ---ceEEEEehhHHHHHHHHHHHH
Confidence 334447788999888876544
No 48
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=1e-36 Score=283.85 Aligned_cols=288 Identities=23% Similarity=0.282 Sum_probs=209.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCccee-cCCCCCCCCHhHHHH
Q 013890 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVC-VGSGGERLLPEWYKE 84 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 84 (434)
|||+|||||+||++||..|++.|++ |+|||+++... .+........+|++... .+........+.+++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~gg--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 69 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLK---TLIIEGMEPGG--------QLTTTTEVENYPGFPEGISGPELMEKMKEQAVK 69 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCC---EEEEeccCCCc--------ceeecccccccCCCCCCCChHHHHHHHHHHHHH
Confidence 6999999999999999999999987 99999886211 01111111112222110 000112344556777
Q ss_pred CCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcC
Q 013890 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKK 162 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~ 162 (434)
.+++++. ..|+.+++.++ .+...++.++.||+||+|||+.|..|+.++........++.+...... ..+
T Consensus 70 ~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~--------~~~ 140 (300)
T TIGR01292 70 FGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCDGP--------FFK 140 (300)
T ss_pred cCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecChh--------hcC
Confidence 8999998 69999998765 455566778999999999999988776433221122345444332221 115
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHc-CcEEEcCCeEEEEEecCCCcEEE
Q 013890 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVNE 241 (434)
Q Consensus 163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gV~~~~~~~v~~i~~~~~g~~~~ 241 (434)
+++++|+|+|.+|+|+|..|.+.+.+|+++.+.+.+.. . ..+.+.+++. ||++++++.+.++.. ++.+..
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~---~----~~~~~~l~~~~gv~~~~~~~v~~i~~--~~~~~~ 211 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA---E----KILLDRLRKNPNIEFLWNSTVKEIVG--DNKVEG 211 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc---C----HHHHHHHHhCCCeEEEeccEEEEEEc--cCcEEE
Confidence 78999999999999999999999999999999876532 2 3345566676 999999999999986 334445
Q ss_pred EEeC---CC--cEEEcCEEEEccCCccChhhhhccccc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccH
Q 013890 242 VKLK---DG--RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHV 315 (434)
Q Consensus 242 v~~~---~g--~~i~~d~vv~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~ 315 (434)
+.+. ++ +++++|.+++|+|++|+.++++..+.. .+|++.||++++|++|+||++|||+.... ..+
T Consensus 212 v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~~~~~~~g~i~v~~~~~t~~~~vya~GD~~~~~~---------~~~ 282 (300)
T TIGR01292 212 VKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGLLELDEGGYIVTDEGMRTSVPGVFAAGDVRDKGY---------RQA 282 (300)
T ss_pred EEEEecCCCceEEEEccEEEEeeCCCCChHHHHHhheecCCCcEEECCCCccCCCCEEEeecccCcch---------hhh
Confidence 5442 23 579999999999999999887655444 56899999999999999999999997421 567
Q ss_pred HHHHHHHHHHHHHHhc
Q 013890 316 DHARKSAEQAVKTIMA 331 (434)
Q Consensus 316 ~~A~~~g~~aa~~i~~ 331 (434)
..|..||+.||.+|..
T Consensus 283 ~~A~~~g~~aa~~i~~ 298 (300)
T TIGR01292 283 VTAAGDGCIAALSAER 298 (300)
T ss_pred hhhhhhHHHHHHHHHh
Confidence 8899999999999874
No 49
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=1.2e-36 Score=301.34 Aligned_cols=292 Identities=21% Similarity=0.276 Sum_probs=211.0
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHH
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
..|||+||||||||++||.+|++.|++ |+|+++.. +.. +... .....++++....+........++++
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~---v~li~~~~--GG~-~~~~------~~~~~~~~~~~~~~~~l~~~l~~~l~ 278 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLR---TAMVAERI--GGQ-VKDT------VGIENLISVPYTTGSQLAANLEEHIK 278 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCC--CCc-cccC------cCcccccccCCCCHHHHHHHHHHHHH
Confidence 358999999999999999999999987 99997531 110 0000 00111111111111111233456667
Q ss_pred HCCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhc
Q 013890 84 EKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAK 161 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~ 161 (434)
+.+++++.+++|..++.+.+ .+.+.++..+.||++|+|||+.|+.|+.++........++.+...... + .
T Consensus 279 ~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~ipG~~~~~~~~v~~~~~~~~~------~--~ 350 (515)
T TIGR03140 279 QYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHCDGP------F--F 350 (515)
T ss_pred HhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCCCCCCCHHHcCCCeEEEeeccChh------h--c
Confidence 78999999989999987653 456667788999999999999988777433211123455554433221 1 1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHH-cCcEEEcCCeEEEEEecCCCcEE
Q 013890 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVN 240 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gV~~~~~~~v~~i~~~~~g~~~ 240 (434)
.+++++|||+|++|+|+|..|++.+.+|+++++.+.+.. ...+.+.+++ .||++++++.+.++.. +++.+.
T Consensus 351 ~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~-------~~~l~~~l~~~~gV~i~~~~~v~~i~~-~~~~v~ 422 (515)
T TIGR03140 351 KGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA-------DKVLQDKLKSLPNVDILTSAQTTEIVG-DGDKVT 422 (515)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh-------hHHHHHHHhcCCCCEEEECCeeEEEEc-CCCEEE
Confidence 578999999999999999999999999999998776532 2345566665 6999999999999986 345566
Q ss_pred EEEeCC---C--cEEEcCEEEEccCCccChhhhhccccc-cCCcEEeCCCCCCCCCceEEecccccccccccCccccccc
Q 013890 241 EVKLKD---G--RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEH 314 (434)
Q Consensus 241 ~v~~~~---g--~~i~~d~vv~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~ 314 (434)
.+.+.+ + +++++|.|++++|++|++++++..+.. .+|+|.||+++||++|+|||+|||+..+. +.
T Consensus 423 ~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~~~~~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~---------~~ 493 (515)
T TIGR03140 423 GIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDAVELNRRGEIVIDERGRTSVPGIFAAGDVTTVPY---------KQ 493 (515)
T ss_pred EEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhhcccCCCCeEEECCCCCCCCCCEEEcccccCCcc---------ce
Confidence 676643 2 469999999999999999988655555 56889999999999999999999998654 33
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 013890 315 VDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 315 ~~~A~~~g~~aa~~i~~~ 332 (434)
+..|..+|..||.+|...
T Consensus 494 ~~~A~~~G~~Aa~~i~~~ 511 (515)
T TIGR03140 494 IIIAMGEGAKAALSAFDY 511 (515)
T ss_pred EEEEEccHHHHHHHHHHH
Confidence 446788999999988754
No 50
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-36 Score=270.34 Aligned_cols=405 Identities=24% Similarity=0.362 Sum_probs=311.9
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCC--CcceecCCCCCC--CC--
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLP--GFHVCVGSGGER--LL-- 78 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~-- 78 (434)
+.-.+|||+|.+..+++....... ..+.|.+|..++..||.||++++.+|+...+.... .|..+.|..... ..
T Consensus 178 hvp~liigggtaAfaa~rai~s~d-a~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~ 256 (659)
T KOG1346|consen 178 HVPYLIIGGGTAAFAAFRAIKSND-ATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDG 256 (659)
T ss_pred cCceeEEcCCchhhhcccccccCC-CCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCc
Confidence 356899999999887777666543 46679999999999999999999999877553222 222223322111 01
Q ss_pred ----HhH---HHHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCC---CCCCEEEEeCH
Q 013890 79 ----PEW---YKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGA---DAKNIFYLREI 148 (434)
Q Consensus 79 ----~~~---~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~---~~~~v~~~~~~ 148 (434)
.+- ..+-|+-+.++..|..|+.+.+.|.+.||.+|.||+++||||.+|+..+. ++.+ -...+..++..
T Consensus 257 FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~--~~~A~~evk~kit~fr~p 334 (659)
T KOG1346|consen 257 FFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQV--FEEASEEVKQKITYFRYP 334 (659)
T ss_pred ceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchh--hhhcCHHhhhheeEEecc
Confidence 111 12358999999999999999999999999999999999999999987765 2322 24578888999
Q ss_pred HHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHC----CCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEc
Q 013890 149 DDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN----NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK 224 (434)
Q Consensus 149 ~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~----g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~ 224 (434)
.|..++.+.+.. .++|.|||+|++|-|+|..|.+. |.+|+-+......+...+++-++++-.+.+++.||.++.
T Consensus 335 ~DF~rlek~~ae--k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~p 412 (659)
T KOG1346|consen 335 ADFKRLEKGLAE--KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRP 412 (659)
T ss_pred hHHHHHHHhhhh--cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceecc
Confidence 999999888874 48999999999999999998764 778888877777777778889999999999999999999
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhhhc-cccc--cCCcEEeCCCCCCCCCceEEecccccc
Q 013890 225 GTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE--NKGGIETDDFFKTSADDVYAVGDVATF 301 (434)
Q Consensus 225 ~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~~-~~~~--~~g~i~vd~~~~t~~~~iya~Gd~~~~ 301 (434)
+..|.++..+... ..+.+.||.++..|+||+|+|-.||++++.. ++.. .-|++.||..++. ..|||++||++.+
T Consensus 413 na~v~sv~~~~~n--l~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~a-r~NvwvAGdaacF 489 (659)
T KOG1346|consen 413 NAKVESVRKCCKN--LVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELKA-RENVWVAGDAACF 489 (659)
T ss_pred chhhhhhhhhccc--eEEEecCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheeec-ccceeeecchhhh
Confidence 9999999874333 4588999999999999999999999999965 5555 4589999999998 6899999999999
Q ss_pred cccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEee-cCcceEEeecCCCc---E-E---------
Q 013890 302 PMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRA-FDLSWQFYGDNVGD---T-V--------- 367 (434)
Q Consensus 302 ~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~G~~~~~---~-~--------- 367 (434)
.+...| +++.+|+.+|.-.||.|+.||.+.. .+|..+.+||+.. |++.+..+|+-... + +
T Consensus 490 ~D~~LG-rRRVehhdhavvSGRLAGENMtgAa-----kpy~hqsmFWsdlgP~igyeaIGlvDSSLpTVgVfA~p~s~~~ 563 (659)
T KOG1346|consen 490 EDGVLG-RRRVEHHDHAVVSGRLAGENMTGAA-----KPYKHQSMFWSDLGPEIGYEAIGLVDSSLPTVGVFALPSSATR 563 (659)
T ss_pred hccccc-ceeccccccceeeceeccccccccc-----CCccccceeeeccCcccccceeeecccCCCcceeeeccccccc
Confidence 887665 4566899999999999999999865 6788888999863 56666666643210 0 0
Q ss_pred -----EEcCC-----------------Ccc--------ccCC---cEEEEEEeCCEEEEEEEecCChHHHHHHHHHHHcC
Q 013890 368 -----LFGDN-----------------DLA--------SATH---KFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQ 414 (434)
Q Consensus 368 -----~~~~~-----------------~~~--------~~~~---~~~~~~~~~~~ilG~~~~g~~~~~~~~~~~~i~~~ 414 (434)
...+. .+. .+.. +-+.||++|++|+|+.++. -=..+......|..+
T Consensus 564 ~~~~se~sdt~v~~~s~s~s~ss~~~~~~s~~~v~~~P~e~~~ygKgViFYl~d~~iVGilLwN-~Fnr~~~AR~II~d~ 642 (659)
T KOG1346|consen 564 VDQLSESSDTDVPETSTSSSQSSKSDAGASQDGVTCDPDEAGNYGKGVIFYLKDDKIVGILLWN-LFNRIGLARTIINDN 642 (659)
T ss_pred hhhhhhccCCCCccccccccccccccCCcCCCCCccCcccccccCceEEEEecCCcEEEEEehh-hhccchhhHHHhccc
Confidence 00011 000 0112 2344777999999999996 335778888999999
Q ss_pred CCCCChhhhh
Q 013890 415 PSVESLDVLK 424 (434)
Q Consensus 415 ~~~~~~~~~~ 424 (434)
...+|+..++
T Consensus 643 kk~ddlnEvA 652 (659)
T KOG1346|consen 643 KKYDDLNEVA 652 (659)
T ss_pred cchhhHHHHH
Confidence 9888877544
No 51
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-36 Score=271.57 Aligned_cols=290 Identities=23% Similarity=0.289 Sum_probs=219.8
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcce-ecCCCCCCCCHhHH
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHV-CVGSGGERLLPEWY 82 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 82 (434)
+.|||+|||||||||+||.++.+.+++. ++|+|+.....+ +........+|++.. ..+....+...++.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~--~li~~~~~~gg~--------~~~~~~venypg~~~~~~g~~L~~~~~~~a 71 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKV--VLILEGGEPGGQ--------LTKTTDVENYPGFPGGILGPELMEQMKEQA 71 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCc--EEEEecCCcCCc--------cccceeecCCCCCccCCchHHHHHHHHHHH
Confidence 4699999999999999999999998763 566666543211 111113455666654 33333334455555
Q ss_pred HHCCcEEEcCCeEEEEeCCC--CEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHh
Q 013890 83 KEKGIELILSTEIVRADIAS--KTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA 160 (434)
Q Consensus 83 ~~~~v~~~~~~~v~~i~~~~--~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~ 160 (434)
...++++.. ..+..++... ..|.+.++. +.+++||||||..++.|..++-+.....+++++..++. .+
T Consensus 72 ~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg--~~------ 141 (305)
T COG0492 72 EKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG--FF------ 141 (305)
T ss_pred hhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCc--cc------
Confidence 667889888 4888888765 356666666 99999999999999888754322334578888887665 22
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHc-CcEEEcCCeEEEEEecCCCcE
Q 013890 161 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEV 239 (434)
Q Consensus 161 ~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gV~~~~~~~v~~i~~~~~g~~ 239 (434)
++++++|||+|.+++|.|..|.+.+.+|++++|.+.+-. .+ .+.+.+++. +|++++++.+.++.. ++ +
T Consensus 142 -~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra---~~----~~~~~l~~~~~i~~~~~~~i~ei~G--~~-v 210 (305)
T COG0492 142 -KGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA---EE----ILVERLKKNVKIEVLTNTVVKEILG--DD-V 210 (305)
T ss_pred -cCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc---CH----HHHHHHHhcCCeEEEeCCceeEEec--Cc-c
Confidence 588999999999999999999999999999999987764 23 334445544 899999999999987 33 5
Q ss_pred EEEEeCCC----cEEEcCEEEEccCCccChhhhhccccc-cCCcEEeCCCCCCCCCceEEecccccccccccCccccccc
Q 013890 240 NEVKLKDG----RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEH 314 (434)
Q Consensus 240 ~~v~~~~g----~~i~~d~vv~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~ 314 (434)
.++.+.+. +++.+|-+++++|..|+++++...... ++|+|.||+.++||+|+|||+||++..+. .+
T Consensus 211 ~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~g~I~v~~~~~TsvpGifAaGDv~~~~~---------rq 281 (305)
T COG0492 211 EGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEEMETSVPGIFAAGDVADKNG---------RQ 281 (305)
T ss_pred ceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccccCCCCcEEcCCCcccCCCCEEEeEeeccCcc---------cE
Confidence 66777653 278999999999999999988765444 78999999999999999999999998764 35
Q ss_pred HHHHHHHHHHHHHHHhccC
Q 013890 315 VDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 315 ~~~A~~~g~~aa~~i~~~~ 333 (434)
+..|..+|..||.++...+
T Consensus 282 i~ta~~~G~~Aa~~a~~~l 300 (305)
T COG0492 282 IATAAGDGAIAALSAERYL 300 (305)
T ss_pred EeehhhhHHHHHHHHHHHh
Confidence 6677788888888776543
No 52
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=9.2e-36 Score=297.01 Aligned_cols=293 Identities=23% Similarity=0.257 Sum_probs=205.7
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhH
Q 013890 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEW 81 (434)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (434)
|.+.|||+||||||||++||.+|+++|++ |+|||++...+. +........+|++....+......+.+.
T Consensus 1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~---V~liE~~~~GG~--------~~~~~~i~~~pg~~~~~~~~l~~~l~~~ 69 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLD---TLIIEKDDFGGQ--------ITITSEVVNYPGILNTTGPELMQEMRQQ 69 (555)
T ss_pred CCCcCcEEEECCCHHHHHHHHHHHHCCCC---EEEEecCCCCce--------EEeccccccCCCCcCCCHHHHHHHHHHH
Confidence 45579999999999999999999999887 999999753211 0001111122222111111111233345
Q ss_pred HHHCCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHH
Q 013890 82 YKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIK 159 (434)
Q Consensus 82 ~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~ 159 (434)
.++.+++++. ..|+.++.+.+ .+...+ ..+.++++|||||+.|+.|+.+|........++++.......
T Consensus 70 ~~~~gv~~~~-~~V~~i~~~~~~~~V~~~~-g~~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~~~~~------- 140 (555)
T TIGR03143 70 AQDFGVKFLQ-AEVLDVDFDGDIKTIKTAR-GDYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDGEF------- 140 (555)
T ss_pred HHHcCCEEec-cEEEEEEecCCEEEEEecC-CEEEEeEEEECCCCccCCCCCCCHHHhCCceEEEEeecChhh-------
Confidence 5667899864 58888887654 344444 468999999999999988875332222345566554433211
Q ss_pred hcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcE
Q 013890 160 AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEV 239 (434)
Q Consensus 160 ~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~ 239 (434)
..+++++|||+|++|+|+|..|.+.|.+|+++.+.+.+.. +.... .+.+++.||++++++.|.++.. ++.+
T Consensus 141 -~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~---~~~~~---~~~~~~~gV~i~~~~~V~~i~~--~~~v 211 (555)
T TIGR03143 141 -FTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC---AKLIA---EKVKNHPKIEVKFNTELKEATG--DDGL 211 (555)
T ss_pred -cCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc---CHHHH---HHHHhCCCcEEEeCCEEEEEEc--CCcE
Confidence 1589999999999999999999999999999999886532 33332 2334456999999999999975 3443
Q ss_pred EEEE---eCCCcEE----EcCE----EEEccCCccChhhhhccccc-cCCcEEeCCCCCCCCCceEEecccccccccccC
Q 013890 240 NEVK---LKDGRTL----EADI----VVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYR 307 (434)
Q Consensus 240 ~~v~---~~~g~~i----~~d~----vv~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~ 307 (434)
..+. ..+|++. ++|. |++++|++|++.+++.++.. .+|+|.||+++||++|+|||+|||+....
T Consensus 212 ~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~~l~l~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~---- 287 (555)
T TIGR03143 212 RYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKGVVELDKRGYIPTNEDMETNVPGVYAAGDLRPKEL---- 287 (555)
T ss_pred EEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhhhcccCCCCeEEeCCccccCCCCEEEceeccCCCc----
Confidence 3333 2456533 3676 99999999999988776666 46889999999999999999999985321
Q ss_pred cccccccHHHHHHHHHHHHHHHhcc
Q 013890 308 EMRRVEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 308 ~~~~~~~~~~A~~~g~~aa~~i~~~ 332 (434)
..+..|..||+.||.+|...
T Consensus 288 -----~~v~~A~~~G~~Aa~~i~~~ 307 (555)
T TIGR03143 288 -----RQVVTAVADGAIAATSAERY 307 (555)
T ss_pred -----chheeHHhhHHHHHHHHHHH
Confidence 35667999999999998643
No 53
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=1.3e-35 Score=294.27 Aligned_cols=292 Identities=22% Similarity=0.269 Sum_probs=214.4
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.|||+||||||||++||.+|+++|++ |+|+++.....+ ........++++....+......+.+.+++
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~---v~li~~~~GG~~---------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 278 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIR---TGIVAERFGGQV---------LDTMGIENFISVPETEGPKLAAALEEHVKE 278 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCee---------eccCcccccCCCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999987 999976411101 000011112222111111122344566777
Q ss_pred CCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcC
Q 013890 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKK 162 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~ 162 (434)
.+++++.++++..++.... .+.+.++..+.||++|+|||++|+.++.++........++++...+... .+
T Consensus 279 ~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~~~~~--------~~ 350 (517)
T PRK15317 279 YDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPL--------FK 350 (517)
T ss_pred CCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeeccCchh--------cC
Confidence 8999999989999987643 5666777889999999999999987774332222334555543322211 15
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHH-cCcEEEcCCeEEEEEecCCCcEEE
Q 013890 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVNE 241 (434)
Q Consensus 163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gV~~~~~~~v~~i~~~~~g~~~~ 241 (434)
+++++|||+|++|+|+|..|+..+.+|+++.+.+.+.. + +.+.+.+.+ .||+++.++.+.++.. +++.+..
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~---~----~~l~~~l~~~~gI~i~~~~~v~~i~~-~~g~v~~ 422 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA---D----QVLQDKLRSLPNVTIITNAQTTEVTG-DGDKVTG 422 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc---c----HHHHHHHhcCCCcEEEECcEEEEEEc-CCCcEEE
Confidence 88999999999999999999999999999998876542 2 334555554 6999999999999986 3466666
Q ss_pred EEeC---CC--cEEEcCEEEEccCCccChhhhhccccc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccH
Q 013890 242 VKLK---DG--RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHV 315 (434)
Q Consensus 242 v~~~---~g--~~i~~d~vv~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~ 315 (434)
+.+. +| +++++|.+++++|++|++++++..+.. .+|+|.||+++||++|+|||+|||+..+. +.+
T Consensus 423 v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~v~~~~~g~i~vd~~l~Ts~p~IyAaGDv~~~~~---------k~~ 493 (517)
T PRK15317 423 LTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGTVELNRRGEIIVDARGATSVPGVFAAGDCTTVPY---------KQI 493 (517)
T ss_pred EEEEECCCCcEEEEEcCEEEEeECCccCchHHhhheeeCCCCcEEECcCCCCCCCCEEECccccCCCC---------CEE
Confidence 6654 33 359999999999999999988655555 56889999999999999999999998654 456
Q ss_pred HHHHHHHHHHHHHHhccC
Q 013890 316 DHARKSAEQAVKTIMATE 333 (434)
Q Consensus 316 ~~A~~~g~~aa~~i~~~~ 333 (434)
..|..+|..||.++...+
T Consensus 494 ~~A~~eG~~Aa~~~~~~l 511 (517)
T PRK15317 494 IIAMGEGAKAALSAFDYL 511 (517)
T ss_pred EEhhhhHHHHHHHHHHHH
Confidence 678889999999887654
No 54
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=100.00 E-value=7.6e-35 Score=283.58 Aligned_cols=286 Identities=21% Similarity=0.232 Sum_probs=206.1
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHH
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
..++|+|||||+||+++|..|++.|++ |+|+|+++.... ++.. .+|.+... ........++++
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~---V~vie~~~~~GG--------~l~~----gip~~~~~--~~~~~~~~~~l~ 194 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHS---VTVFEALHKPGG--------VVTY----GIPEFRLP--KEIVVTEIKTLK 194 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCc---EEEEecCCCCCc--------Eeee----cCCCccCC--HHHHHHHHHHHH
Confidence 357999999999999999999999987 999999864221 1110 01111000 000122335567
Q ss_pred HCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCC-CcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHH----
Q 013890 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS-TVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI---- 158 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~-~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l---- 158 (434)
+.+++++.++.+ .+.+.+.+. ...||+||||||+ .|+.++ ++|.+..++++..++.....+....
T Consensus 195 ~~gv~~~~~~~v------~~~v~~~~~-~~~yd~viiAtGa~~p~~~~---ipG~~~~gv~~~~~~l~~~~~~~~~~~~~ 264 (449)
T TIGR01316 195 KLGVTFRMNFLV------GKTATLEEL-FSQYDAVFIGTGAGLPKLMN---IPGEELCGVYSANDFLTRANLMKAYEFPH 264 (449)
T ss_pred hCCcEEEeCCcc------CCcCCHHHH-HhhCCEEEEeCCCCCCCcCC---CCCCCCCCcEEHHHHHHHHhhcccccccc
Confidence 789999988543 233444332 3479999999998 677776 6777777888766554433222111
Q ss_pred ---HhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecC
Q 013890 159 ---KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA 235 (434)
Q Consensus 159 ---~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~ 235 (434)
....+++++|||+|++|+|+|..+.++|.+|+++.+.++... +. .....+.+++.||++++++.+.++..++
T Consensus 265 ~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~---~~--~~~~~~~l~~~GV~~~~~~~~~~i~~~~ 339 (449)
T TIGR01316 265 ADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDM---TA--RVEEIAHAEEEGVKFHFLCQPVEIIGDE 339 (449)
T ss_pred cCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccC---CC--CHHHHHHHHhCCCEEEeccCcEEEEEcC
Confidence 012468999999999999999999999999999998764211 11 1222356788999999999999997655
Q ss_pred CCcEEEEEeC---------CC-----------cEEEcCEEEEccCCccChhhhhc-cccc-cCCcEEeCCCCCCCCCceE
Q 013890 236 DGEVNEVKLK---------DG-----------RTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVY 293 (434)
Q Consensus 236 ~g~~~~v~~~---------~g-----------~~i~~d~vv~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~iy 293 (434)
+|++..|.+. +| +++++|.||+|+|+.|+..+++. ++.. .+|+|.||+++||+.|+||
T Consensus 340 ~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~~~Ts~~~Vf 419 (449)
T TIGR01316 340 EGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVF 419 (449)
T ss_pred CCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCCCCccCCCCEE
Confidence 6666666543 23 26999999999999999987754 5665 5688999999999999999
Q ss_pred EecccccccccccCcccccccHHHHHHHHHHHHHHHhc
Q 013890 294 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 331 (434)
Q Consensus 294 a~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 331 (434)
|+|||+..+ .++..|+.+|+.||.+|..
T Consensus 420 A~GD~~~g~----------~~v~~Ai~~G~~AA~~I~~ 447 (449)
T TIGR01316 420 AGGDIILGA----------ATVIRAMGQGKRAAKSINE 447 (449)
T ss_pred EecCCCCCc----------HHHHHHHHHHHHHHHHHHh
Confidence 999999644 4678899999999999864
No 55
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=2.1e-34 Score=280.89 Aligned_cols=290 Identities=22% Similarity=0.229 Sum_probs=207.9
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHH
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
..+||+||||||||++||.+|+++|++ |+|+|+.+.... ++. ..+|.+.... ........++++
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~---V~v~e~~~~~GG--------~l~----~gip~~~l~~-~~~~~~~~~~~~ 202 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYD---VTIFEALHEPGG--------VLV----YGIPEFRLPK-ETVVKKEIENIK 202 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCe---EEEEecCCCCCC--------eee----ecCCCccCCc-cHHHHHHHHHHH
Confidence 357999999999999999999999987 999998764221 110 0112111100 001122346677
Q ss_pred HCCcEEEcCCeEEEEeCCCCEEEcCCC-cEEEeceEEEccCC-CcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHH---
Q 013890 84 EKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGS-TVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI--- 158 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~lilAtG~-~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l--- 158 (434)
+.|++++.++.+ .+.+...+. ..+.||+||||||+ .|+.++ ++|.+.+++++..++.....+....
T Consensus 203 ~~gv~i~~~~~v------~~~v~~~~~~~~~~~d~viiAtGa~~~~~l~---ipG~~~~gV~~~~~~l~~~~~~~~~~~~ 273 (464)
T PRK12831 203 KLGVKIETNVVV------GKTVTIDELLEEEGFDAVFIGSGAGLPKFMG---IPGENLNGVFSANEFLTRVNLMKAYKPE 273 (464)
T ss_pred HcCCEEEcCCEE------CCcCCHHHHHhccCCCEEEEeCCCCCCCCCC---CCCcCCcCcEEHHHHHHHHHhccccccc
Confidence 889999998654 223333332 34579999999998 587776 6887778888766555443221110
Q ss_pred ---HhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc-cCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEec
Q 013890 159 ---KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 234 (434)
Q Consensus 159 ---~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~ 234 (434)
....+++++|||+|++|+|+|..+.++|.+|+++.+.+. .++. .. ..+ +.+++.||++++++.+.++..+
T Consensus 274 ~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a----~~-~e~-~~a~~eGV~i~~~~~~~~i~~~ 347 (464)
T PRK12831 274 YDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPA----RV-EEV-HHAKEEGVIFDLLTNPVEILGD 347 (464)
T ss_pred ccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCC----CH-HHH-HHHHHcCCEEEecccceEEEec
Confidence 012579999999999999999999999999999988653 2221 11 111 3456789999999999999865
Q ss_pred CCCcEEEEEeC------------------CCc--EEEcCEEEEccCCccChhhhhc--cccc-cCCcEEeCCC-CCCCCC
Q 013890 235 ADGEVNEVKLK------------------DGR--TLEADIVVVGVGGRPLISLFKG--QVAE-NKGGIETDDF-FKTSAD 290 (434)
Q Consensus 235 ~~g~~~~v~~~------------------~g~--~i~~d~vv~a~G~~p~~~~~~~--~~~~-~~g~i~vd~~-~~t~~~ 290 (434)
++|++..+.+. +|+ ++++|.||+|+|+.|+..++.. ++.. .+|.|.||++ ++|+.|
T Consensus 348 ~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~p 427 (464)
T PRK12831 348 ENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKE 427 (464)
T ss_pred CCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCccCCC
Confidence 56766665542 222 6999999999999999987753 5555 5688999988 999999
Q ss_pred ceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCC
Q 013890 291 DVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG 334 (434)
Q Consensus 291 ~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 334 (434)
+|||+|||+..+ ..+..|..+|+.||.+|...+.
T Consensus 428 gVfAaGD~~~g~----------~~v~~Ai~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 428 GVFAGGDAVTGA----------ATVILAMGAGKKAAKAIDEYLS 461 (464)
T ss_pred CEEEeCCCCCCc----------hHHHHHHHHHHHHHHHHHHHhc
Confidence 999999998654 4578899999999999976554
No 56
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=100.00 E-value=9.9e-32 Score=261.96 Aligned_cols=388 Identities=25% Similarity=0.259 Sum_probs=296.4
Q ss_pred EEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHCCc
Q 013890 8 YVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGI 87 (434)
Q Consensus 8 vvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 87 (434)
++|||+|++|+++|..+++.. +..+++++.++....|.++.++..+........... .... +..+.++
T Consensus 1 ivivG~g~aG~~aa~~l~~~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~i 68 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLL-LAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLR----------YPPR-FNRATGI 68 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcC-CCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhc----------ccch-hHHhhCC
Confidence 589999999999999998865 356799999998888877766554433322111110 1111 2246789
Q ss_pred EEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEE
Q 013890 88 ELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAV 167 (434)
Q Consensus 88 ~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vv 167 (434)
.+..++.+..+++..+.+.+.++ .+.||+|++|||++|..++ +.....+++.+...++..+...... .++++
T Consensus 69 ~~~~~~~v~~id~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~ 140 (415)
T COG0446 69 DVRTGTEVTSIDPENKVVLLDDG-EIEYDYLVLATGARPRPPP-----ISDWEGVVTLRLREDAEALKGGAEP--PKDVV 140 (415)
T ss_pred EEeeCCEEEEecCCCCEEEECCC-cccccEEEEcCCCcccCCC-----ccccCceEEECCHHHHHHHHHHHhc--cCeEE
Confidence 99999999999999999999888 8999999999999998776 3455678999999999988877753 58999
Q ss_pred EECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEE-EEeCC
Q 013890 168 VVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNE-VKLKD 246 (434)
Q Consensus 168 VvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~-v~~~~ 246 (434)
|+|+|++|+|+|..+.+.|.+|++++..+++++..+.+++.+.+.+.++++||+++++..+.+++...+..... +...+
T Consensus 141 vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~ 220 (415)
T COG0446 141 VVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGID 220 (415)
T ss_pred EECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeC
Confidence 99999999999999999999999999999998863228999999999999999999999999998733322211 57788
Q ss_pred CcEEEcCEEEEccCCccChhhhhccc--cc-cCCcEEeCCCCCCC-CCceEEecccccccccccCcccccccHHHHHHHH
Q 013890 247 GRTLEADIVVVGVGGRPLISLFKGQV--AE-NKGGIETDDFFKTS-ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSA 322 (434)
Q Consensus 247 g~~i~~d~vv~a~G~~p~~~~~~~~~--~~-~~g~i~vd~~~~t~-~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g 322 (434)
+..+++|++++++|.+|++.+..... .. .+|++.||+.++|+ .++|||+|||+..+....+.....+++..|..++
T Consensus 221 ~~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~ 300 (415)
T COG0446 221 GEEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAG 300 (415)
T ss_pred CcEEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhh
Confidence 88999999999999999988887654 33 67789999999997 9999999999998765444445568899999999
Q ss_pred HHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCC-cE-------EEEcCCCcc--ccCCc--EEEEE--EeC
Q 013890 323 EQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG-DT-------VLFGDNDLA--SATHK--FGTYW--IKD 388 (434)
Q Consensus 323 ~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~-~~-------~~~~~~~~~--~~~~~--~~~~~--~~~ 388 (434)
+.++.++.+. . .....+++.++..+++.....|.... +. ...+..... ..... ..+.. ..+
T Consensus 301 ~i~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (415)
T COG0446 301 RIAAENIAGA-L----RIPGLLGTVISDVGDLCAASTGLTEGKERGIDVVLVVSGGKDPRAHLYPGAELVGIKLVGDADT 375 (415)
T ss_pred HHHHHHhccc-c----ccccccCceEEEEcCeEEEEecCCcccccceeeeEEEeccCcccccccCCCCeEEEEEEEcCcc
Confidence 9999999875 1 34456778889999988888887763 11 111111111 01111 22222 267
Q ss_pred CEEEEEEEecCChHHHHHHHHHHHcCCCCCChh
Q 013890 389 GKVVGVFLESGTPEENKAIAKVARVQPSVESLD 421 (434)
Q Consensus 389 ~~ilG~~~~g~~~~~~~~~~~~i~~~~~~~~~~ 421 (434)
++++|++. -.....+..+..+++.+.++.++.
T Consensus 376 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 407 (415)
T COG0446 376 GRILGGQE-LEVLKRIGALALAIGLGDTVAELD 407 (415)
T ss_pred cceehhhh-HHHHhhhhhhhhhhhhcCchhhhh
Confidence 88888887 222334588888888888887544
No 57
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=100.00 E-value=2e-32 Score=279.58 Aligned_cols=281 Identities=25% Similarity=0.315 Sum_probs=194.8
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++|+||||||||++||..|+++|++ |+|+|+.+.... .+. ..+|.+... ........+++.+
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~---VtV~Ek~~~~GG--------~lr----~~IP~~Rlp--~evL~~die~l~~ 601 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHP---VTVFEREENAGG--------VVK----NIIPQFRIP--AELIQHDIEFVKA 601 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCe---EEEEecccccCc--------cee----eeccccccc--HHHHHHHHHHHHH
Confidence 47999999999999999999999987 999999865321 110 012222110 0001223466777
Q ss_pred CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcc-cccCCCCCCCCCCCEEEEeCH-HHHHHHHHHHHhcC
Q 013890 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL-RLTDFGVEGADAKNIFYLREI-DDADKLVEAIKAKK 162 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~-~p~~~~i~g~~~~~v~~~~~~-~~~~~l~~~l~~~~ 162 (434)
.|++++.++.+ .++ +.+.....||+||||||+++. .++ ++|.+ .++++..+. .+.......+ ..
T Consensus 602 ~GVe~~~gt~V-di~-------le~L~~~gYDaVILATGA~~~~~l~---IpG~~-~gV~saldfL~~~k~~~~~~--~~ 667 (1019)
T PRK09853 602 HGVKFEFGCSP-DLT-------VEQLKNEGYDYVVVAIGADKNGGLK---LEGGN-QNVIKALPFLEEYKNKGTAL--KL 667 (1019)
T ss_pred cCCEEEeCcee-EEE-------hhhheeccCCEEEECcCCCCCCCCC---CCCcc-CCceehHHHHHHHhhhcccc--cC
Confidence 89999998765 222 223334569999999999853 333 56644 455542221 1111111111 15
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC-C-CeEEEEeeCCc-cCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcE
Q 013890 163 NGKAVVVGGGYIGLELSAALKIN-N-IDVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEV 239 (434)
Q Consensus 163 ~~~vvVvG~g~~g~e~a~~l~~~-g-~~v~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~ 239 (434)
+++|+|||+|++|+|+|..+.+. | .+|+++.|.+. .++. .+++ +.+.+ +.||++++++.+.++.. ++.+
T Consensus 668 GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA-~~eE----le~Al-eeGVe~~~~~~p~~I~~--dG~l 739 (1019)
T PRK09853 668 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPA-WREE----YEEAL-EDGVEFKELLNPESFDA--DGTL 739 (1019)
T ss_pred CCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccc-cHHH----HHHHH-HcCCEEEeCCceEEEEc--CCcE
Confidence 79999999999999999998887 4 48999998763 3443 2333 33333 57999999988888863 2322
Q ss_pred ----------------EEEEeCCCcEEEcCEEEEccCCccChhhhhc-cccc-cCCcEEeCCCCCCCCCceEEecccccc
Q 013890 240 ----------------NEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATF 301 (434)
Q Consensus 240 ----------------~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~ 301 (434)
..+...++.++++|.||+|+|.+|+++++.. ++.. .+|++.||+++||+.|+|||+|||+..
T Consensus 740 ~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G~I~VDetlqTs~pgVFAaGD~a~G 819 (1019)
T PRK09853 740 TCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRG 819 (1019)
T ss_pred EEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhcCccccCCCCEEeCCCcccCCCCEEEEeccccC
Confidence 2223344468999999999999999998754 5655 568899999999999999999999865
Q ss_pred cccccCcccccccHHHHHHHHHHHHHHHhccCC
Q 013890 302 PMKLYREMRRVEHVDHARKSAEQAVKTIMATEG 334 (434)
Q Consensus 302 ~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 334 (434)
+ ..+..|+.+|+.||.+|++...
T Consensus 820 p----------~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 820 P----------STIVAAIADARRAADAILSREG 842 (1019)
T ss_pred c----------hHHHHHHHHHHHHHHHHhhhcC
Confidence 4 4577899999999999987653
No 58
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=9.8e-33 Score=285.02 Aligned_cols=288 Identities=22% Similarity=0.251 Sum_probs=207.6
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++|+||||||||++||..|+++|++ |+|+|+.+... +++.. .+|.+... ........+++++
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~---V~v~e~~~~~G--------G~l~~----gip~~rlp--~~~~~~~~~~l~~ 493 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYD---VTVFEALHEIG--------GVLKY----GIPEFRLP--KKIVDVEIENLKK 493 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCe---EEEEecCCCCC--------Ceeee----cCCCCCCC--HHHHHHHHHHHHH
Confidence 57999999999999999999999987 99999975422 11111 11211110 0001223456778
Q ss_pred CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCC-CcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHH-----
Q 013890 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS-TVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI----- 158 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~-~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l----- 158 (434)
.|++++.++.+ .+.+.+.+.....||+||||||+ .|+.++ ++|.+.+++++..++.....+....
T Consensus 494 ~gv~~~~~~~v------~~~v~~~~l~~~~ydavvlAtGa~~~~~l~---ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~ 564 (752)
T PRK12778 494 LGVKFETDVIV------GKTITIEELEEEGFKGIFIASGAGLPNFMN---IPGENSNGVMSSNEYLTRVNLMDAASPDSD 564 (752)
T ss_pred CCCEEECCCEE------CCcCCHHHHhhcCCCEEEEeCCCCCCCCCC---CCCCCCCCcEEHHHHHHHHhhccccccccc
Confidence 89999988543 23444444445679999999999 577666 6887778888766554433221110
Q ss_pred -HhcCCCcEEEECCCHHHHHHHHHHHHCCCe-EEEEeeCCc-cCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecC
Q 013890 159 -KAKKNGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA 235 (434)
Q Consensus 159 -~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~-v~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~ 235 (434)
....+++++|||+|++|+|+|..+.+.|.+ |+++.+.+. .++. ...+ + +.+++.||++++++.+.++..++
T Consensus 565 ~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~-~~~e----~-~~~~~~GV~i~~~~~~~~i~~~~ 638 (752)
T PRK12778 565 TPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPA-RLEE----V-KHAKEEGIEFLTLHNPIEYLADE 638 (752)
T ss_pred CcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHHH----H-HHHHHcCCEEEecCcceEEEECC
Confidence 012468999999999999999999999997 999998754 2222 1111 1 34678899999999999997655
Q ss_pred CCcEEEEEeC---------CC-----------cEEEcCEEEEccCCccChhhhhc--cccc-cCCcEEeCCCCCCCCCce
Q 013890 236 DGEVNEVKLK---------DG-----------RTLEADIVVVGVGGRPLISLFKG--QVAE-NKGGIETDDFFKTSADDV 292 (434)
Q Consensus 236 ~g~~~~v~~~---------~g-----------~~i~~d~vv~a~G~~p~~~~~~~--~~~~-~~g~i~vd~~~~t~~~~i 292 (434)
+|++.++.+. +| .++++|.||+|+|++|+..++.. ++.. .+|+|.||++++|+.|+|
T Consensus 639 ~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~gV 718 (752)
T PRK12778 639 KGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGI 718 (752)
T ss_pred CCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCCCCCCCCE
Confidence 6776666542 22 25899999999999999876643 4555 568899999999999999
Q ss_pred EEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCC
Q 013890 293 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG 334 (434)
Q Consensus 293 ya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 334 (434)
||+|||+..+ ..+..|..+|+.||.+|...+.
T Consensus 719 fA~GD~~~g~----------~~vv~Av~~G~~AA~~I~~~L~ 750 (752)
T PRK12778 719 YAGGDIVRGG----------ATVILAMGDGKRAAAAIDEYLS 750 (752)
T ss_pred EEeCCccCCc----------HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999754 4577899999999999986543
No 59
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=100.00 E-value=6e-32 Score=264.77 Aligned_cols=287 Identities=22% Similarity=0.243 Sum_probs=200.1
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++|+|||||+||+++|..|+++|++ |+|+|+++.... ++.. .+|.+... ........+++++
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~---V~lie~~~~~gG--------~l~~----gip~~~~~--~~~~~~~~~~l~~ 202 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYD---VTIFEARDKAGG--------LLRY----GIPEFRLP--KDIVDREVERLLK 202 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCe---EEEEccCCCCCc--------Eeec----cCCCccCC--HHHHHHHHHHHHH
Confidence 47999999999999999999999886 999999865321 1100 01111000 0001233456777
Q ss_pred CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCC-cccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHh-cC
Q 013890 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA-KK 162 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~-~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~-~~ 162 (434)
.+++++.++.+. +.+.+.+. .+.||+||+|||+. |..++ ++|.+.+++++...+............ ..
T Consensus 203 ~gv~~~~~~~v~------~~v~~~~~-~~~~d~vvlAtGa~~~~~~~---i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~ 272 (457)
T PRK11749 203 LGVEIRTNTEVG------RDITLDEL-RAGYDAVFIGTGAGLPRFLG---IPGENLGGVYSAVDFLTRVNQAVADYDLPV 272 (457)
T ss_pred cCCEEEeCCEEC------CccCHHHH-HhhCCEEEEccCCCCCCCCC---CCCccCCCcEEHHHHHHHHhhccccccCCC
Confidence 899999886542 22333222 27899999999996 55555 577666677764333222111000011 15
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCCc-cCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEE
Q 013890 163 NGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVN 240 (434)
Q Consensus 163 ~~~vvVvG~g~~g~e~a~~l~~~g~-~v~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~ 240 (434)
+++++|||+|++|+|+|..+.+.|. +|+++.+.+. .++. ... ..+.+++.||++++++.+.++..+ ++.+.
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~--~~~----~~~~~~~~GV~i~~~~~v~~i~~~-~~~~~ 345 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPA--SEE----EVEHAKEEGVEFEWLAAPVEILGD-EGRVT 345 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCC--CHH----HHHHHHHCCCEEEecCCcEEEEec-CCceE
Confidence 7899999999999999999999998 8999998654 2332 111 245678899999999999999863 33323
Q ss_pred EEEeC-------------------CCcEEEcCEEEEccCCccChhhhhc--cccc-cCCcEEeCC-CCCCCCCceEEecc
Q 013890 241 EVKLK-------------------DGRTLEADIVVVGVGGRPLISLFKG--QVAE-NKGGIETDD-FFKTSADDVYAVGD 297 (434)
Q Consensus 241 ~v~~~-------------------~g~~i~~d~vv~a~G~~p~~~~~~~--~~~~-~~g~i~vd~-~~~t~~~~iya~Gd 297 (434)
+|.+. +++++++|.||+|+|++|+..++.. ++.. .+|+|.||+ +++|++|+|||+||
T Consensus 346 ~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD 425 (457)
T PRK11749 346 GVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGD 425 (457)
T ss_pred EEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCC
Confidence 33321 2347999999999999999877642 4555 568999998 89999999999999
Q ss_pred cccccccccCcccccccHHHHHHHHHHHHHHHhccCCC
Q 013890 298 VATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 335 (434)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 335 (434)
|+..+ ..+..|..+|+.||.+|...+.+
T Consensus 426 ~~~~~----------~~~~~A~~~G~~aA~~I~~~l~g 453 (457)
T PRK11749 426 IVTGA----------ATVVWAVGDGKDAAEAIHEYLEG 453 (457)
T ss_pred cCCCc----------hHHHHHHHHHHHHHHHHHHHHhc
Confidence 99543 46788999999999999876644
No 60
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=2.4e-31 Score=252.07 Aligned_cols=290 Identities=23% Similarity=0.286 Sum_probs=199.2
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHH
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
..++|+|||+|++|+++|..|++.|++ |+++|+.+.... ++... ++.+.. .........+.+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~~gg--------~~~~~----~~~~~~--~~~~~~~~~~~l~ 79 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYE---VHVYDKLPEPGG--------LMLFG----IPEFRI--PIERVREGVKELE 79 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCc---EEEEeCCCCCCc--------eeeec----Cccccc--CHHHHHHHHHHHH
Confidence 357999999999999999999999886 999999865321 11000 000000 0000012234455
Q ss_pred HCCcEEEcCCeEEEEeC----CCCE-----EEcCCCcEEEeceEEEccCC-CcccccCCCCCCCCCCCEEEEeCHHHHHH
Q 013890 84 EKGIELILSTEIVRADI----ASKT-----LLSATGLIFKYQILVIATGS-TVLRLTDFGVEGADAKNIFYLREIDDADK 153 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~----~~~~-----v~~~~~~~~~~d~lilAtG~-~~~~p~~~~i~g~~~~~v~~~~~~~~~~~ 153 (434)
+.+++++.++.+..++. .... +.. ++..+.||+||||||+ .|..|+ ++|.+.+++++.. .....
T Consensus 80 ~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~lviAtGs~~~~~~~---ipg~~~~~v~~~~--~~~~~ 153 (352)
T PRK12770 80 EAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSL-EELVKKYDAVLIATGTWKSRKLG---IPGEDLPGVYSAL--EYLFR 153 (352)
T ss_pred hCCeEEecCcEEeeccccccccccccccccCCH-HHHHhhCCEEEEEeCCCCCCcCC---CCCccccCceeHH--HHHHH
Confidence 66999999877755432 0111 111 1224789999999999 466666 5666666776532 22222
Q ss_pred HHHH---------HHhcCCCcEEEECCCHHHHHHHHHHHHCCCe-EEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEE
Q 013890 154 LVEA---------IKAKKNGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 223 (434)
Q Consensus 154 l~~~---------l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~ 223 (434)
+... .....+++++|+|+|++|+|+|..|...|.+ |+++.+.+..... . .....+.++++||+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~-~----~~~~~~~l~~~gi~i~ 228 (352)
T PRK12770 154 IRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAP-A----GKYEIERLIARGVEFL 228 (352)
T ss_pred hhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCC-C----CHHHHHHHHHcCCEEe
Confidence 2111 0011368999999999999999999999987 9999887543221 1 1334456889999999
Q ss_pred cCCeEEEEEecCCCcEEEEEe--------------------CCCcEEEcCEEEEccCCccChhhhh--ccccc-cCCcEE
Q 013890 224 KGTVAVGFTTNADGEVNEVKL--------------------KDGRTLEADIVVVGVGGRPLISLFK--GQVAE-NKGGIE 280 (434)
Q Consensus 224 ~~~~v~~i~~~~~g~~~~v~~--------------------~~g~~i~~d~vv~a~G~~p~~~~~~--~~~~~-~~g~i~ 280 (434)
+++.+.+++. ++.+..+.+ .+++++++|.+++++|++|++.+.. .++.. .+|++.
T Consensus 229 ~~~~v~~i~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~ 306 (352)
T PRK12770 229 ELVTPVRIIG--EGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIV 306 (352)
T ss_pred eccCceeeec--CCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEe
Confidence 9999999875 344434432 1235799999999999999988765 34555 557899
Q ss_pred eCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013890 281 TDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 281 vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
||++++|+.|+|||+|||+..+ ..+..|..+|+.||.+|...+
T Consensus 307 vd~~~~t~~~~vyaiGD~~~~~----------~~~~~A~~~g~~aa~~i~~~l 349 (352)
T PRK12770 307 VDEKHMTSREGVFAAGDVVTGP----------SKIGKAIKSGLRAAQSIHEWL 349 (352)
T ss_pred eCCCcccCCCCEEEEcccccCc----------chHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999754 457789999999999997654
No 61
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=100.00 E-value=1.6e-31 Score=277.47 Aligned_cols=288 Identities=19% Similarity=0.189 Sum_probs=205.9
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++|+|||||||||+||..|+++|++ |+|+|+.+..+ +++.. .+|.+... ........+.++.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~---VtVfE~~~~~G--------G~l~y----GIP~~rlp--~~vi~~~i~~l~~ 368 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFP---VTVFEAFHDLG--------GVLRY----GIPEFRLP--NQLIDDVVEKIKL 368 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCe---EEEEeeCCCCC--------ceEEc----cCCCCcCh--HHHHHHHHHHHHh
Confidence 57999999999999999999999997 99999986422 12211 12332211 0001233456677
Q ss_pred CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCC-cccccCCCCCCCCCCCEEEEeCHHHHHHHHHHH-----
Q 013890 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEAI----- 158 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~-~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l----- 158 (434)
.|++++.++.+ ++.+.+++.....||+|+||||+. |+.++ +||.+..+|++..++.....+....
T Consensus 369 ~Gv~f~~n~~v------G~dit~~~l~~~~yDAV~LAtGA~~pr~l~---IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~ 439 (944)
T PRK12779 369 LGGRFVKNFVV------GKTATLEDLKAAGFWKIFVGTGAGLPTFMN---VPGEHLLGVMSANEFLTRVNLMRGLDDDYE 439 (944)
T ss_pred hcCeEEEeEEe------ccEEeHHHhccccCCEEEEeCCCCCCCcCC---CCCCcCcCcEEHHHHHHHHHhhcccccccc
Confidence 89999887543 345566555556899999999995 77666 6888888998876655443322111
Q ss_pred ---HhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc-cCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEec
Q 013890 159 ---KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 234 (434)
Q Consensus 159 ---~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~ 234 (434)
....+++|+|||+|++|+++|..+.+.|.+|+++.+.+. .++. . ...+.+ ..+.||+++.++.++++..+
T Consensus 440 ~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa----~-~~e~~~-a~eeGV~~~~~~~p~~i~~d 513 (944)
T PRK12779 440 TPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPA----R-VEELHH-ALEEGINLAVLRAPREFIGD 513 (944)
T ss_pred ccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccc----c-HHHHHH-HHHCCCEEEeCcceEEEEec
Confidence 112478999999999999999999999999999988753 2221 1 122222 34679999999999999764
Q ss_pred CC-CcEEEEEe---------C--------CC--cEEEcCEEEEccCCccChhhhhc--cccc-cCCcEEeCC-CCCCCCC
Q 013890 235 AD-GEVNEVKL---------K--------DG--RTLEADIVVVGVGGRPLISLFKG--QVAE-NKGGIETDD-FFKTSAD 290 (434)
Q Consensus 235 ~~-g~~~~v~~---------~--------~g--~~i~~d~vv~a~G~~p~~~~~~~--~~~~-~~g~i~vd~-~~~t~~~ 290 (434)
++ +.+..+.+ . +| .++++|.||+|+|+.|+..+... ++.. .+|.|.||+ .++|+.|
T Consensus 514 ~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~p 593 (944)
T PRK12779 514 DHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIK 593 (944)
T ss_pred CCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCccCCC
Confidence 33 34544432 1 12 36999999999999999765433 4555 568899996 5899999
Q ss_pred ceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCC
Q 013890 291 DVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG 334 (434)
Q Consensus 291 ~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 334 (434)
+|||+|||+..+ .++..|+.+|+.||.+|...+.
T Consensus 594 gVFAaGD~~~G~----------~~vv~Ai~eGr~AA~~I~~~L~ 627 (944)
T PRK12779 594 GVYSGGDAARGG----------STAIRAAGDGQAAAKEIVGEIP 627 (944)
T ss_pred CEEEEEcCCCCh----------HHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999754 4577899999999999986654
No 62
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.98 E-value=5.9e-31 Score=275.79 Aligned_cols=290 Identities=21% Similarity=0.203 Sum_probs=203.5
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++|+|||||||||+||.+|+++|++ |+|+|+.+..+ +++. ..+|.+.. .........+++.+
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~---VtV~E~~~~~G--------G~l~----~gip~~rl--~~e~~~~~~~~l~~ 492 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVD---VTVYEALHVVG--------GVLQ----YGIPSFRL--PRDIIDREVQRLVD 492 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCCc--------ceee----ccCCccCC--CHHHHHHHHHHHHH
Confidence 47999999999999999999999987 99999986432 1111 11222210 00011234566778
Q ss_pred CCcEEEcCCeEEEEeCCCCEEEcCCCc-EEEeceEEEccCCC-cccccCCCCCCCCCCCEEEEeCHHHHHHHHHHH----
Q 013890 85 KGIELILSTEIVRADIASKTLLSATGL-IFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEAI---- 158 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~-~~~~d~lilAtG~~-~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l---- 158 (434)
.|++++.++.+ ++.+...+-. ...||+||||||+. |+.++ +||.+..++++..++.....+....
T Consensus 493 ~Gv~~~~~~~v------g~~~~~~~l~~~~~yDaViIATGa~~pr~l~---IpG~~l~gV~~a~~fL~~~~~~~~~~~~~ 563 (1006)
T PRK12775 493 IGVKIETNKVI------GKTFTVPQLMNDKGFDAVFLGVGAGAPTFLG---IPGEFAGQVYSANEFLTRVNLMGGDKFPF 563 (1006)
T ss_pred CCCEEEeCCcc------CCccCHHHHhhccCCCEEEEecCCCCCCCCC---CCCcCCCCcEEHHHHHHHHHhcCcccccc
Confidence 89999988532 1222222211 24699999999995 77666 6787778888766554443321000
Q ss_pred ---HhcCCCcEEEECCCHHHHHHHHHHHHCCCe-EEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEec
Q 013890 159 ---KAKKNGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 234 (434)
Q Consensus 159 ---~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~ 234 (434)
....+++++|||+|++|+++|..+.++|.+ |+++.+....- .+... .-.+.+++.||++++++.+.++..+
T Consensus 564 ~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~e---m~a~~--~e~~~a~eeGI~~~~~~~p~~i~~~ 638 (1006)
T PRK12775 564 LDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAE---APARI--EEIRHAKEEGIDFFFLHSPVEIYVD 638 (1006)
T ss_pred ccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCccc---CCCCH--HHHHHHHhCCCEEEecCCcEEEEeC
Confidence 012579999999999999999999999975 78887654321 11111 1124567889999999999999765
Q ss_pred CCCcEEEEEeC-----------------CC--cEEEcCEEEEccCCccChhhhhc--cccc-cCCcEEeCC-----CCCC
Q 013890 235 ADGEVNEVKLK-----------------DG--RTLEADIVVVGVGGRPLISLFKG--QVAE-NKGGIETDD-----FFKT 287 (434)
Q Consensus 235 ~~g~~~~v~~~-----------------~g--~~i~~d~vv~a~G~~p~~~~~~~--~~~~-~~g~i~vd~-----~~~t 287 (434)
++|++.++.+. .| .++++|.||+|+|++|+..++.. ++.. ..|.|.+|+ +++|
T Consensus 639 ~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~T 718 (1006)
T PRK12775 639 AEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQST 718 (1006)
T ss_pred CCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCC
Confidence 67777666542 12 26999999999999999876543 4555 467899996 7899
Q ss_pred CCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCC
Q 013890 288 SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 335 (434)
Q Consensus 288 ~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 335 (434)
|+|+|||+||++..+ .++..|+.+|+.||.+|...+.+
T Consensus 719 s~pgVFAaGDv~~G~----------~~vv~Ai~~Gr~AA~~I~~~L~~ 756 (1006)
T PRK12775 719 NLPGVFAGGDIVTGG----------ATVILAMGAGRRAARSIATYLRL 756 (1006)
T ss_pred CCCCEEEecCcCCCc----------cHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999654 45778999999999998765543
No 63
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.98 E-value=8.3e-31 Score=257.07 Aligned_cols=293 Identities=22% Similarity=0.262 Sum_probs=199.1
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++|+|||||+||+++|..|++.|++ |+|+|+.+.... ++.. .+|.+... ........+++.+
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~---V~vie~~~~~GG--------~l~~----gip~~~~~--~~~~~~~~~~~~~ 205 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHK---VTVFERADRIGG--------LLRY----GIPDFKLE--KEVIDRRIELMEA 205 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCc---EEEEecCCCCCc--------eeee----cCCcccCC--HHHHHHHHHHHHh
Confidence 47999999999999999999999987 999999865321 1110 11111100 0001223456778
Q ss_pred CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCC-cccccCCCCCCCCCCCEEEEeCHHHHH--HHHHH--H-
Q 013890 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDAD--KLVEA--I- 158 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~-~~~p~~~~i~g~~~~~v~~~~~~~~~~--~l~~~--l- 158 (434)
.|++++.++.+. .+.. . +.....||++|+|||+. |..++ ++|.+..++++..++.... .+... .
T Consensus 206 ~gv~~~~~~~v~-~~~~-----~-~~~~~~~d~vvlAtGa~~~~~l~---ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~ 275 (471)
T PRK12810 206 EGIEFRTNVEVG-KDIT-----A-EELLAEYDAVFLGTGAYKPRDLG---IPGRDLDGVHFAMDFLIQNTRRVLGDETEP 275 (471)
T ss_pred CCcEEEeCCEEC-CcCC-----H-HHHHhhCCEEEEecCCCCCCcCC---CCCccCCCcEEHHHHHHHHHhhhccccccc
Confidence 899999986542 1111 1 11235799999999997 65555 6777777888643322111 00000 0
Q ss_pred -HhcCCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCCccCCcccCH----H-HHHHHHHHHHHcCcEEEcCCeEEEE
Q 013890 159 -KAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWCMPRLFTA----D-IAAFYEGYYANKGIKIIKGTVAVGF 231 (434)
Q Consensus 159 -~~~~~~~vvVvG~g~~g~e~a~~l~~~g~-~v~~~~~~~~~~~~~~~~----~-~~~~~~~~l~~~gV~~~~~~~v~~i 231 (434)
....+++++|||+|++|+|+|..+.+.|. +|++++..+......++. . ......+.+++.||++++++.+.++
T Consensus 276 ~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i 355 (471)
T PRK12810 276 FISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEF 355 (471)
T ss_pred cccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEE
Confidence 01257899999999999999998888886 788766554332211010 0 0111345677889999999999999
Q ss_pred EecCCCcEEEEEeC-----CC---------cEEEcCEEEEccCCccChh-hhhc-cccc-cCCcEEeC-CCCCCCCCceE
Q 013890 232 TTNADGEVNEVKLK-----DG---------RTLEADIVVVGVGGRPLIS-LFKG-QVAE-NKGGIETD-DFFKTSADDVY 293 (434)
Q Consensus 232 ~~~~~g~~~~v~~~-----~g---------~~i~~d~vv~a~G~~p~~~-~~~~-~~~~-~~g~i~vd-~~~~t~~~~iy 293 (434)
.. +++++..|++. +| +++++|.||+|+|.+|+.. ++.. ++.. .+|.+.|| ++++|+.|+||
T Consensus 356 ~~-~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVf 434 (471)
T PRK12810 356 EG-ENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVF 434 (471)
T ss_pred Ec-cCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEE
Confidence 75 46666655432 22 4799999999999999853 5543 4555 46889998 79999999999
Q ss_pred EecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCC
Q 013890 294 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 335 (434)
Q Consensus 294 a~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 335 (434)
|+|||+..+ ..+..|..+|+.||.+|...+.+
T Consensus 435 a~GD~~~g~----------~~~~~Av~~G~~AA~~i~~~L~g 466 (471)
T PRK12810 435 AAGDMRRGQ----------SLVVWAIAEGRQAARAIDAYLMG 466 (471)
T ss_pred EccccCCCc----------hhHHHHHHHHHHHHHHHHHHHhc
Confidence 999999743 35778999999999999876654
No 64
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.97 E-value=4.6e-30 Score=263.78 Aligned_cols=281 Identities=20% Similarity=0.259 Sum_probs=187.9
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++|+||||||||++||..|+++|++ |+|+|+++..+. .+.. .+|.+... ........+++.+
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~---VTV~Ek~~~lGG--------~l~~----~IP~~rlp--~e~l~~~ie~l~~ 599 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHP---VTVFEKKEKPGG--------VVKN----IIPEFRIS--AESIQKDIELVKF 599 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCe---EEEEecccccCc--------eeee----cccccCCC--HHHHHHHHHHHHh
Confidence 47999999999999999999999987 999999865321 1100 01221110 0001223356667
Q ss_pred CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHH-HhcCC
Q 013890 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI-KAKKN 163 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l-~~~~~ 163 (434)
.|++++.+... .+.+.+.....||+||||||+.+..+. +++|.. .+++. ..+.+..+.... ....+
T Consensus 600 ~GVe~~~g~~~--------d~~ve~l~~~gYDaVIIATGA~~~~~l--~I~G~~-~~v~~--avefL~~~~~~~~~~~~G 666 (1012)
T TIGR03315 600 HGVEFKYGCSP--------DLTVAELKNQGYKYVILAIGAWKHGPL--RLEGGG-ERVLK--SLEFLRAFKEGPTINPLG 666 (1012)
T ss_pred cCcEEEEeccc--------ceEhhhhhcccccEEEECCCCCCCCCC--CcCCCC-cceee--HHHHHHHhhccccccccC
Confidence 89999887321 122223344679999999999854332 255533 34442 222222221110 01258
Q ss_pred CcEEEECCCHHHHHHHHHHHHC-CC-eEEEEeeCCc-cCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe-------
Q 013890 164 GKAVVVGGGYIGLELSAALKIN-NI-DVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT------- 233 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~-g~-~v~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~------- 233 (434)
++|+|||+|++|+|+|..+.+. |. +|+++.+... .++. .+.++ .+. .+.||+++++..+.++..
T Consensus 667 K~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa-~~eEl----~~a-leeGVe~~~~~~p~~I~~g~l~v~~ 740 (1012)
T TIGR03315 667 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPA-SREEL----EEA-LEDGVDFKELLSPESFEDGTLTCEV 740 (1012)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCcccccc-CHHHH----HHH-HHcCCEEEeCCceEEEECCeEEEEE
Confidence 9999999999999999998886 75 7999998763 3332 23333 233 357999999888877762
Q ss_pred ------cCCCcEEEEEeCCC--cEEEcCEEEEccCCccChhhhhc-cccc-cCCcEEeCCC-CCCCCCceEEeccccccc
Q 013890 234 ------NADGEVNEVKLKDG--RTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDF-FKTSADDVYAVGDVATFP 302 (434)
Q Consensus 234 ------~~~g~~~~v~~~~g--~~i~~d~vv~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~-~~t~~~~iya~Gd~~~~~ 302 (434)
+.+|+... ..+| .++++|.||+|+|.+|+..+++. ++.. .+|++.||++ ++|+.|+|||+|||+..+
T Consensus 741 ~~l~~~d~sGr~~~--v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP 818 (1012)
T TIGR03315 741 MKLGEPDASGRRRP--VGTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGP 818 (1012)
T ss_pred EEeecccCCCceee--ecCCCeEEEEeCEEEEecCCcCChHHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCc
Confidence 01111111 1223 36899999999999999998754 5665 5688999986 899999999999998654
Q ss_pred ccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013890 303 MKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 303 ~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
..+..|+.+|+.||.+|++..
T Consensus 819 ----------~tVv~AIaqGr~AA~nIl~~~ 839 (1012)
T TIGR03315 819 ----------ATIVEAIADGRKAANAILSRE 839 (1012)
T ss_pred ----------cHHHHHHHHHHHHHHHHhccc
Confidence 457889999999999998654
No 65
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.97 E-value=3.5e-30 Score=232.48 Aligned_cols=295 Identities=21% Similarity=0.331 Sum_probs=214.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHH
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
++++|||+|+|.+|.+.+..|-...++ |+||++.+++.|. |.+. ......-.+.. ..+.......
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~Yd---V~vVSPRnyFlFT-PLLp------S~~vGTve~rS-----IvEPIr~i~r 118 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYD---VTVVSPRNYFLFT-PLLP------STTVGTVELRS-----IVEPIRAIAR 118 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccc---eEEeccccceEEe-eccC------Cccccceeehh-----hhhhHHHHhh
Confidence 357899999999999999888876555 9999999875543 1111 11100000000 0011222222
Q ss_pred H--CCcEEEcCCeEEEEeCCCCEEEc----CCC----cEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHH
Q 013890 84 E--KGIELILSTEIVRADIASKTLLS----ATG----LIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADK 153 (434)
Q Consensus 84 ~--~~v~~~~~~~v~~i~~~~~~v~~----~~~----~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~ 153 (434)
. .++.++.. +-+.+|++++.|++ .++ ..+.||+||+|+|+.+..+.+ ||.. .+.+.++...++++
T Consensus 119 ~k~~~~~y~eA-ec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgi---pGV~-e~~~FLKEv~dAqe 193 (491)
T KOG2495|consen 119 KKNGEVKYLEA-ECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGI---PGVE-ENAHFLKEVEDAQE 193 (491)
T ss_pred ccCCCceEEec-ccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCC---Cchh-hchhhhhhhhHHHH
Confidence 2 25667664 88899999998765 233 468999999999999987774 5543 45567788888988
Q ss_pred HHHHHHhc---------------CCCcEEEECCCHHHHHHHHHHHHC--------------CCeEEEEeeCCccCCcccC
Q 013890 154 LVEAIKAK---------------KNGKAVVVGGGYIGLELSAALKIN--------------NIDVSMVYPEPWCMPRLFT 204 (434)
Q Consensus 154 l~~~l~~~---------------~~~~vvVvG~g~~g~e~a~~l~~~--------------g~~v~~~~~~~~~~~~~~~ 204 (434)
++..+-.. +-.+++|||||++|+|+|.+|... -.+||+++..+.+++. |+
T Consensus 194 IR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~m-Fd 272 (491)
T KOG2495|consen 194 IRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNM-FD 272 (491)
T ss_pred HHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHH-HH
Confidence 86654211 224789999999999999998753 4689999999999984 89
Q ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEEcCEEEEccCCccChh--hhhccccc-cCCcE
Q 013890 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG--RTLEADIVVVGVGGRPLIS--LFKGQVAE-NKGGI 279 (434)
Q Consensus 205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g--~~i~~d~vv~a~G~~p~~~--~~~~~~~~-~~g~i 279 (434)
..+.+...+.+.+.||++..++.|..+.. ....+...+| ++|++-+++|+||..|..- -+...+.. .+.++
T Consensus 273 krl~~yae~~f~~~~I~~~~~t~Vk~V~~----~~I~~~~~~g~~~~iPYG~lVWatG~~~rp~~k~lm~~i~e~~rr~L 348 (491)
T KOG2495|consen 273 KRLVEYAENQFVRDGIDLDTGTMVKKVTE----KTIHAKTKDGEIEEIPYGLLVWATGNGPRPVIKDLMKQIDEQGRRGL 348 (491)
T ss_pred HHHHHHHHHHhhhccceeecccEEEeecC----cEEEEEcCCCceeeecceEEEecCCCCCchhhhhHhhcCCccCceee
Confidence 99999999999999999999999999865 2234555555 5799999999999766543 33333333 34589
Q ss_pred EeCCCCCC-CCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHh
Q 013890 280 ETDDFFKT-SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM 330 (434)
Q Consensus 280 ~vd~~~~t-~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 330 (434)
.||++||. +.+||||+|||+..+.. .++++.|.+||..+|+++-
T Consensus 349 ~vDE~LrV~G~~nvfAiGDca~~~~~-------~~tAQVA~QqG~yLAk~fn 393 (491)
T KOG2495|consen 349 AVDEWLRVKGVKNVFAIGDCADQRGL-------KPTAQVAEQQGAYLAKNFN 393 (491)
T ss_pred eeeceeeccCcCceEEeccccccccC-------ccHHHHHHHHHHHHHHHHH
Confidence 99999999 89999999999944332 1578889999999999864
No 66
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.97 E-value=2.7e-29 Score=245.45 Aligned_cols=285 Identities=21% Similarity=0.274 Sum_probs=198.6
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++|+|||+|++|+++|..|+++|++ |+++|+.+... +++.. .+|.+... ........+++++
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~---V~i~e~~~~~g--------G~l~~----gip~~~~~--~~~~~~~~~~~~~ 203 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQ---VVVFDRHPEIG--------GLLTF----GIPSFKLD--KAVLSRRREIFTA 203 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCCC--------ceeee----cCccccCC--HHHHHHHHHHHHH
Confidence 47999999999999999999999887 99999986532 11111 11221110 0001233467788
Q ss_pred CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCccc-ccCCCCCCCCCCCEEEEeCHHHH--HHHHHH----
Q 013890 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLR-LTDFGVEGADAKNIFYLREIDDA--DKLVEA---- 157 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~-p~~~~i~g~~~~~v~~~~~~~~~--~~l~~~---- 157 (434)
.|++++.++.+.. .+...+ ....||.+|+|||+.+.. ++ ++|.+.+++++..++... ..+...
T Consensus 204 ~Gv~~~~~~~v~~------~~~~~~-~~~~~D~vilAtGa~~~~~~~---i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~ 273 (467)
T TIGR01318 204 MGIEFHLNCEVGR------DISLDD-LLEDYDAVFLGVGTYRSMRGG---LPGEDAPGVLQALPFLIANTRQLMGLPESP 273 (467)
T ss_pred CCCEEECCCEeCC------ccCHHH-HHhcCCEEEEEeCCCCCCcCC---CCCcCCCCcEEHHHHHHHHHHHhcCCCccc
Confidence 8999999876521 122211 224799999999998753 34 688787888865432211 101000
Q ss_pred ---HHhcCCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCCcc-CCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEE
Q 013890 158 ---IKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232 (434)
Q Consensus 158 ---l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~-~v~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~ 232 (434)
+....+++++|+|+|++|+++|..+.++|. +|+++.+.+.. ++. .+.+ .+.+++.||++++++.+.++.
T Consensus 274 ~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~-~~~e-----~~~~~~~GV~~~~~~~~~~i~ 347 (467)
T TIGR01318 274 EEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPG-SRRE-----VANAREEGVEFLFNVQPVYIE 347 (467)
T ss_pred cccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCC-CHHH-----HHHHHhcCCEEEecCCcEEEE
Confidence 001246899999999999999999999995 79999987653 332 2222 244678899999999999997
Q ss_pred ecCCCcEEEEEeC---------CC-----------cEEEcCEEEEccCCccChh-hhh-ccccc-cCCcEEeC----CCC
Q 013890 233 TNADGEVNEVKLK---------DG-----------RTLEADIVVVGVGGRPLIS-LFK-GQVAE-NKGGIETD----DFF 285 (434)
Q Consensus 233 ~~~~g~~~~v~~~---------~g-----------~~i~~d~vv~a~G~~p~~~-~~~-~~~~~-~~g~i~vd----~~~ 285 (434)
.++++.+.++++. +| +++++|.||+|+|++|+.. ++. .++.. .+|++.|| .++
T Consensus 348 ~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~ 427 (467)
T TIGR01318 348 CDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPY 427 (467)
T ss_pred ECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCc
Confidence 6556666555431 12 3689999999999999853 333 34555 56889999 689
Q ss_pred CCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhcc
Q 013890 286 KTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 286 ~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 332 (434)
+|+.|+|||+|||+..+ ..+..|..+|+.||.+|...
T Consensus 428 ~T~~~gVfa~GD~~~~~----------~~~~~Ai~~G~~aA~~i~~~ 464 (467)
T TIGR01318 428 QTTNPKIFAGGDAVRGA----------DLVVTAVAEGRQAAQGILDW 464 (467)
T ss_pred cCCCCCEEEECCcCCCc----------cHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998754 35678999999999998754
No 67
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.97 E-value=1.4e-29 Score=256.58 Aligned_cols=286 Identities=20% Similarity=0.272 Sum_probs=194.9
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++|+|||||+||+++|..|++.|++ |+|+|+++.... ++.. .+|.+... ........+.+.+
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~---Vtv~e~~~~~GG--------~l~~----gip~~~~~--~~~~~~~~~~l~~ 255 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHD---VTIFDANEQAGG--------MMRY----GIPRFRLP--ESVIDADIAPLRA 255 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCc--------eeee----cCCCCCCC--HHHHHHHHHHHHH
Confidence 47999999999999999999999987 999999865321 1110 11211100 0001122355677
Q ss_pred CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcc-cccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCC
Q 013890 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL-RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN 163 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~-~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~ 163 (434)
.|+++..++.+ .++ +...+. ...||+|++|||+.+. .++ ++|.+..++++..++... ....-....+
T Consensus 256 ~Gv~i~~~~~v-~~d-----v~~~~~-~~~~DaVilAtGa~~~~~~~---ipG~~~~gv~~~~~~l~~--~~~~~~~~~g 323 (652)
T PRK12814 256 MGAEFRFNTVF-GRD-----ITLEEL-QKEFDAVLLAVGAQKASKMG---IPGEELPGVISGIDFLRN--VALGTALHPG 323 (652)
T ss_pred cCCEEEeCCcc-cCc-----cCHHHH-HhhcCEEEEEcCCCCCCCCC---CCCcCcCCcEeHHHHHHH--hhcCCcccCC
Confidence 89999887543 211 122111 2359999999999863 444 677766777653222111 1000011257
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCCc-cCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcE--
Q 013890 164 GKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEV-- 239 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g~-~v~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~-- 239 (434)
++++|||+|++|+|+|..+.+.|. +|+++.+.+. .++. .+.++ .+ ..+.||++++++.+.++... ++.+
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa-~~~ei----~~-a~~eGV~i~~~~~~~~i~~~-~~~~~v 396 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPA-NRAEI----EE-ALAEGVSLRELAAPVSIERS-EGGLEL 396 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHHHH----HH-HHHcCCcEEeccCcEEEEec-CCeEEE
Confidence 999999999999999999999986 6999998764 3443 23332 22 23679999999999998763 3322
Q ss_pred EEEEeC---------------CCc--EEEcCEEEEccCCccChhhhhc-cccc-cCCcEEeCC-CCCCCCCceEEecccc
Q 013890 240 NEVKLK---------------DGR--TLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDD-FFKTSADDVYAVGDVA 299 (434)
Q Consensus 240 ~~v~~~---------------~g~--~i~~d~vv~a~G~~p~~~~~~~-~~~~-~~g~i~vd~-~~~t~~~~iya~Gd~~ 299 (434)
..+.+. +|+ ++++|.||+|+|..|++.++.. ++.. .+|+|.||+ +++|+.|+|||+||++
T Consensus 397 ~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~ 476 (652)
T PRK12814 397 TAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCV 476 (652)
T ss_pred EEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcC
Confidence 222111 122 5899999999999999987754 5655 468899996 6899999999999999
Q ss_pred cccccccCcccccccHHHHHHHHHHHHHHHhccCCCC
Q 013890 300 TFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGK 336 (434)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 336 (434)
..+ .++..|..+|+.||.+|...+.++
T Consensus 477 ~g~----------~~v~~Ai~~G~~AA~~I~~~L~g~ 503 (652)
T PRK12814 477 TGA----------DIAINAVEQGKRAAHAIDLFLNGK 503 (652)
T ss_pred CCc----------hHHHHHHHHHHHHHHHHHHHHcCC
Confidence 654 457889999999999998777654
No 68
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.97 E-value=8.2e-29 Score=252.12 Aligned_cols=286 Identities=19% Similarity=0.241 Sum_probs=197.2
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++|+|||||||||++|..|++.|++ |+|+|+.+..+ +++.. .+|.+... ........+++++
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~---V~V~E~~~~~G--------G~l~~----gip~~~l~--~~~~~~~~~~~~~ 389 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVA---VTVYDRHPEIG--------GLLTF----GIPAFKLD--KSLLARRREIFSA 389 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCC--------ceeee----cCCCccCC--HHHHHHHHHHHHH
Confidence 57999999999999999999999987 99999986532 11111 11221110 0001223456777
Q ss_pred CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcc-cccCCCCCCCCCCCEEEEeCHHH--HHHH---HHH-
Q 013890 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL-RLTDFGVEGADAKNIFYLREIDD--ADKL---VEA- 157 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~-~p~~~~i~g~~~~~v~~~~~~~~--~~~l---~~~- 157 (434)
.|++++.++.+.. .+...+ ....||.+++|||+... .++ +++.+..+++...++.. ...+ ...
T Consensus 390 ~Gv~~~~~~~v~~------~i~~~~-~~~~~DavilAtGa~~~~~l~---i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~ 459 (654)
T PRK12769 390 MGIEFELNCEVGK------DISLES-LLEDYDAVFVGVGTYRSMKAG---LPNEDAPGVYDALPFLIANTKQVMGLEELP 459 (654)
T ss_pred CCeEEECCCEeCC------cCCHHH-HHhcCCEEEEeCCCCCCCCCC---CCCCCCCCeEEhHHHHHHHHhhhccCcccc
Confidence 8999998865521 111111 12469999999998653 334 67777778875432210 0000 000
Q ss_pred ---HHhcCCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCCcc-CCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEE
Q 013890 158 ---IKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232 (434)
Q Consensus 158 ---l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~-~v~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~ 232 (434)
.....+++++|||+|++|+++|..+.+.|. +|+++.+.+.. ++. .+. ..+.+++.||++++++.+.++.
T Consensus 460 ~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~-~~~-----e~~~~~~~Gv~~~~~~~~~~i~ 533 (654)
T PRK12769 460 EEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPG-SKK-----EVKNAREEGANFEFNVQPVALE 533 (654)
T ss_pred ccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCC-CHH-----HHHHHHHcCCeEEeccCcEEEE
Confidence 001246899999999999999999999986 69999887653 332 222 2345788999999999999997
Q ss_pred ecCCCcEEEEEeC---------CC-----------cEEEcCEEEEccCCccChh-hhh-ccccc-cCCcEEeCC----CC
Q 013890 233 TNADGEVNEVKLK---------DG-----------RTLEADIVVVGVGGRPLIS-LFK-GQVAE-NKGGIETDD----FF 285 (434)
Q Consensus 233 ~~~~g~~~~v~~~---------~g-----------~~i~~d~vv~a~G~~p~~~-~~~-~~~~~-~~g~i~vd~----~~ 285 (434)
.+++|++.+|++. +| .++++|.||+|+|+.|+.. +++ .++.+ .+|.|.||+ ++
T Consensus 534 ~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~ 613 (654)
T PRK12769 534 LNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRY 613 (654)
T ss_pred ECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCc
Confidence 6456777666541 22 2599999999999999853 443 35666 568899985 48
Q ss_pred CCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013890 286 KTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 286 ~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
+|++|+|||+||++..+ .++..|+.+|+.||.+|...+
T Consensus 614 ~Ts~~gVfAaGD~~~g~----------~~vv~Ai~~Gr~AA~~I~~~L 651 (654)
T PRK12769 614 QTSNPKIFAGGDAVRGA----------DLVVTAMAEGRHAAQGIIDWL 651 (654)
T ss_pred ccCCCCEEEcCCcCCCC----------cHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998754 457789999999999997654
No 69
>PRK13984 putative oxidoreductase; Provisional
Probab=99.97 E-value=1.1e-28 Score=249.72 Aligned_cols=282 Identities=21% Similarity=0.257 Sum_probs=192.9
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++|+|||+|+||+++|..|+++|++ |+|+|+++.... ++.. .+|.+.. .........+++++
T Consensus 283 ~~~v~IIGaG~aGl~aA~~L~~~G~~---v~vie~~~~~gG--------~~~~----~i~~~~~--~~~~~~~~~~~~~~ 345 (604)
T PRK13984 283 NKKVAIVGSGPAGLSAAYFLATMGYE---VTVYESLSKPGG--------VMRY----GIPSYRL--PDEALDKDIAFIEA 345 (604)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCCc--------eEee----cCCcccC--CHHHHHHHHHHHHH
Confidence 57899999999999999999999987 999999875321 1100 0111100 00001223466778
Q ss_pred CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCC-cccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHh---
Q 013890 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA--- 160 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~-~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~--- 160 (434)
.|++++.++.+.. + +... .....||+||+|||+. |+.++ ++|.+..++++. .+.+..+...+..
T Consensus 346 ~gv~~~~~~~v~~-~-----~~~~-~~~~~yD~vilAtGa~~~r~l~---i~G~~~~gv~~a--~~~l~~~~~~~~~~~~ 413 (604)
T PRK13984 346 LGVKIHLNTRVGK-D-----IPLE-ELREKHDAVFLSTGFTLGRSTR---IPGTDHPDVIQA--LPLLREIRDYLRGEGP 413 (604)
T ss_pred CCcEEECCCEeCC-c-----CCHH-HHHhcCCEEEEEcCcCCCccCC---CCCcCCcCeEeH--HHHHHHHHhhhccCCC
Confidence 8999999876532 1 1111 1235799999999987 45555 677766777753 3333333333211
Q ss_pred --cCCCcEEEECCCHHHHHHHHHHHHCCC------eEEEEeeC--CccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEE
Q 013890 161 --KKNGKAVVVGGGYIGLELSAALKINNI------DVSMVYPE--PWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVG 230 (434)
Q Consensus 161 --~~~~~vvVvG~g~~g~e~a~~l~~~g~------~v~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~ 230 (434)
..+++++|||+|++|+|+|..+.+++. +|+++... ...++ .... .+.+ +.+.||+++.++.+.+
T Consensus 414 ~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~----~~~~-e~~~-~~~~GV~i~~~~~~~~ 487 (604)
T PRK13984 414 KPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMP----ADME-EIEE-GLEEGVVIYPGWGPME 487 (604)
T ss_pred cCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCC----CCHH-HHHH-HHHcCCEEEeCCCCEE
Confidence 136899999999999999999998753 67876432 22222 2111 1222 3467999999998888
Q ss_pred EEecCCCcEEEEEeC--------C-----------CcEEEcCEEEEccCCccChhhhhc----cccccCCcEEeCCCCCC
Q 013890 231 FTTNADGEVNEVKLK--------D-----------GRTLEADIVVVGVGGRPLISLFKG----QVAENKGGIETDDFFKT 287 (434)
Q Consensus 231 i~~~~~g~~~~v~~~--------~-----------g~~i~~d~vv~a~G~~p~~~~~~~----~~~~~~g~i~vd~~~~t 287 (434)
+.. +++.+..+.+. + ++++++|.|++|+|++|+++++.. .+..++|+|.||+++||
T Consensus 488 i~~-~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~~G~i~vd~~~~T 566 (604)
T PRK13984 488 VVI-ENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRILTNEYGQT 566 (604)
T ss_pred EEc-cCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccccCCeEEeCCCCcc
Confidence 865 45666555432 1 236999999999999999987743 24346788999999999
Q ss_pred CCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013890 288 SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 288 ~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
++|+|||+|||+..+ .+..|+.+|+.||.+|...+
T Consensus 567 s~~gVfAaGD~~~~~-----------~~v~Ai~~G~~AA~~I~~~L 601 (604)
T PRK13984 567 SIPWLFAGGDIVHGP-----------DIIHGVADGYWAAEGIDMYL 601 (604)
T ss_pred CCCCEEEecCcCCch-----------HHHHHHHHHHHHHHHHHHHh
Confidence 999999999999754 24668999999999987654
No 70
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.97 E-value=1.1e-28 Score=242.09 Aligned_cols=294 Identities=23% Similarity=0.284 Sum_probs=196.2
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++|+|||+|++|+++|..|+++|++ |+|+|+.+.... ++.. .+|.+.. .........+++++
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~---V~v~e~~~~~gG--------~l~~----gip~~~~--~~~~~~~~~~~~~~ 205 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHT---VTVFEREDRCGG--------LLMY----GIPNMKL--DKAIVDRRIDLLSA 205 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCe---EEEEecCCCCCc--------eeec----cCCCccC--CHHHHHHHHHHHHh
Confidence 37999999999999999999999886 999999865321 1100 0111100 00001233466778
Q ss_pred CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCC-cccccCCCCCCCCCCCEEEEeCH-HHHHHHHH--HH--
Q 013890 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREI-DDADKLVE--AI-- 158 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~-~~~p~~~~i~g~~~~~v~~~~~~-~~~~~l~~--~l-- 158 (434)
.|++++.++.+. .+... ++....||.|++|||+. |..++ ++|.+.++|++..++ ........ ..
T Consensus 206 ~Gv~~~~~~~v~-~~~~~------~~~~~~~d~VilAtGa~~~~~l~---i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~ 275 (485)
T TIGR01317 206 EGIDFVTNTEIG-VDISA------DELKEQFDAVVLAGGATKPRDLP---IPGRELKGIHYAMEFLPSATKALLGKDFKD 275 (485)
T ss_pred CCCEEECCCEeC-CccCH------HHHHhhCCEEEEccCCCCCCcCC---CCCcCCCCcEeHHHHHHHHhhhhccccccc
Confidence 899999987653 11111 11235799999999998 77776 677777888865332 22111100 00
Q ss_pred ---HhcCCCcEEEECCCHHHHHHHHHHHHCC-CeEEEEeeCCccCCccc-----C---H--HHHHHHHHHHHHcCcEE-E
Q 013890 159 ---KAKKNGKAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWCMPRLF-----T---A--DIAAFYEGYYANKGIKI-I 223 (434)
Q Consensus 159 ---~~~~~~~vvVvG~g~~g~e~a~~l~~~g-~~v~~~~~~~~~~~~~~-----~---~--~~~~~~~~~l~~~gV~~-~ 223 (434)
....+++++|||+|++|+|+|..+.+.| .+|+++++.+..+.... + . +......+..+..||.+ +
T Consensus 276 ~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~ 355 (485)
T TIGR01317 276 IIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPRE 355 (485)
T ss_pred cccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceE
Confidence 0125789999999999999988877776 57999987765433111 0 0 12223344444567654 5
Q ss_pred cCCeEEEEEecCCCcEEEEEe--------CCC-----------cEEEcCEEEEccCCc-cChhhhhc-cccc-cCCcEE-
Q 013890 224 KGTVAVGFTTNADGEVNEVKL--------KDG-----------RTLEADIVVVGVGGR-PLISLFKG-QVAE-NKGGIE- 280 (434)
Q Consensus 224 ~~~~v~~i~~~~~g~~~~v~~--------~~g-----------~~i~~d~vv~a~G~~-p~~~~~~~-~~~~-~~g~i~- 280 (434)
+++.+.++..++++.+.++.+ ++| .++++|.||+|+|.. |++.++.. ++.. .+|.+.
T Consensus 356 ~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~ 435 (485)
T TIGR01317 356 YSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISA 435 (485)
T ss_pred EecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEe
Confidence 677888887644466666653 133 269999999999986 88877654 4655 467775
Q ss_pred eCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCC
Q 013890 281 TDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 335 (434)
Q Consensus 281 vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 335 (434)
+|++++|+.|+|||+|||+..+ ..+..|..+|+.||.+|...+.+
T Consensus 436 ~~~~~~Ts~~gVfAaGD~~~g~----------~~~~~Av~~G~~AA~~i~~~L~g 480 (485)
T TIGR01317 436 GYDDYSTSIPGVFAAGDCRRGQ----------SLIVWAINEGRKAAAAVDRYLMG 480 (485)
T ss_pred cCCCceECCCCEEEeeccCCCc----------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 4578999999999999998644 35677999999999999876544
No 71
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.96 E-value=2.1e-27 Score=250.76 Aligned_cols=281 Identities=15% Similarity=0.130 Sum_probs=194.0
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.+||+|||||||||+||.++++.|++ |+|+|+++..... +.... ...++... ........+.+..
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~---V~liD~~~~~GG~-------~~~~~--~~~~g~~~---~~~~~~~~~~l~~ 227 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGAR---VILVDEQPEAGGS-------LLSEA--ETIDGKPA---ADWAAATVAELTA 227 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCCCCCe-------eeccc--cccCCccH---HHHHHHHHHHHhc
Confidence 57999999999999999999999987 9999998653211 11000 01111000 0000112233333
Q ss_pred C-CcEEEcCCeEEEEeCCCCEEEc---C-------C----C--cEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeC
Q 013890 85 K-GIELILSTEIVRADIASKTLLS---A-------T----G--LIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLRE 147 (434)
Q Consensus 85 ~-~v~~~~~~~v~~i~~~~~~v~~---~-------~----~--~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~ 147 (434)
. +++++.++.|..+......... . + + ..+.|++||||||+.++.|+ ++|.+.++|++...
T Consensus 228 ~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~p---ipG~~~pgV~~~~~ 304 (985)
T TIGR01372 228 MPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLV---FANNDRPGVMLAGA 304 (985)
T ss_pred CCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCC---CCCCCCCCcEEchH
Confidence 4 5999998888887653321100 0 0 1 26899999999999998887 67777888987654
Q ss_pred HHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCC
Q 013890 148 IDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT 226 (434)
Q Consensus 148 ~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~ 226 (434)
.....+ .....++++++|+|+|++++|+|..|.+.|. .|+++++.+.+ ...+.+.+++.||+++.++
T Consensus 305 ~~~~l~---~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~---------~~~l~~~L~~~GV~i~~~~ 372 (985)
T TIGR01372 305 ARTYLN---RYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV---------SPEARAEARELGIEVLTGH 372 (985)
T ss_pred HHHHHH---hhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch---------hHHHHHHHHHcCCEEEcCC
Confidence 433211 1111257899999999999999999999995 57888765432 2345677889999999999
Q ss_pred eEEEEEecCCCcEEEEEeC----CCcEEEcCEEEEccCCccChhhhhc-cccccCCcEEeCCCC-----CCCCCceEEec
Q 013890 227 VAVGFTTNADGEVNEVKLK----DGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFF-----KTSADDVYAVG 296 (434)
Q Consensus 227 ~v~~i~~~~~g~~~~v~~~----~g~~i~~d~vv~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~-----~t~~~~iya~G 296 (434)
.+.++.. ++.+..|++. +++++++|.|++++|++|+++++.. +.. +..|+.. .|+.|+||++|
T Consensus 373 ~v~~i~g--~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~-----~~~~~~~~~~~~~t~v~gVyaaG 445 (985)
T TIGR01372 373 VVAATEG--GKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGK-----LAWDAAIAAFLPGDAVQGCILAG 445 (985)
T ss_pred eEEEEec--CCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCC-----eeeccccCceecCCCCCCeEEee
Confidence 9999976 4455555554 4568999999999999999998753 222 1222111 37799999999
Q ss_pred ccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013890 297 DVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 297 d~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
|+++.. .+..|..+|+.||..|+..+
T Consensus 446 D~~g~~-----------~~~~A~~eG~~Aa~~i~~~l 471 (985)
T TIGR01372 446 AANGLF-----------GLAAALADGAAAGAAAARAA 471 (985)
T ss_pred ccCCcc-----------CHHHHHHHHHHHHHHHHHHc
Confidence 999653 46678999999999886544
No 72
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-29 Score=222.46 Aligned_cols=290 Identities=21% Similarity=0.271 Sum_probs=207.2
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.|||+||||||||-+||.+.+|+|.+.+ ++-||-.-. .+..-...++-+.+...|......+.+..++
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTG--l~aerfGGQ----------vldT~~IENfIsv~~teGpkl~~ale~Hv~~ 278 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTG--LVAERFGGQ----------VLDTMGIENFISVPETEGPKLAAALEAHVKQ 278 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhh--hhhhhhCCe----------eccccchhheeccccccchHHHHHHHHHHhh
Confidence 5999999999999999999999998731 222332111 1111112222222222222223345566777
Q ss_pred CCcEEEcCCeEEEEeCC-----CCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHH
Q 013890 85 KGIELILSTEIVRADIA-----SKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIK 159 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~-----~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~ 159 (434)
+.+++....+...+.+. ...|.+.+|..+.++.+||+||++++..+.||-.....++|.+|..++....
T Consensus 279 Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGPLF------ 352 (520)
T COG3634 279 YDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLF------ 352 (520)
T ss_pred cCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCccc------
Confidence 88888766666666653 2368889999999999999999999887754433345788888887776543
Q ss_pred hcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHH-cCcEEEcCCeEEEEEecCCCc
Q 013890 160 AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGE 238 (434)
Q Consensus 160 ~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gV~~~~~~~v~~i~~~~~g~ 238 (434)
++|+++|||||++|+|.|..|+..-.+||+++-.+.+- .-+.+.+.+++ .+|+++.+..-+++..+ ..+
T Consensus 353 --~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLk-------AD~VLq~kl~sl~Nv~ii~na~Ttei~Gd-g~k 422 (520)
T COG3634 353 --KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELK-------ADAVLQDKLRSLPNVTIITNAQTTEVKGD-GDK 422 (520)
T ss_pred --CCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhh-------hHHHHHHHHhcCCCcEEEecceeeEEecC-Cce
Confidence 79999999999999999999998888999997443322 12234444443 57999999999999872 245
Q ss_pred EEEEEeCC---Cc--EEEcCEEEEccCCccChhhhhccccc-cCCcEEeCCCCCCCCCceEEecccccccccccCccccc
Q 013890 239 VNEVKLKD---GR--TLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRV 312 (434)
Q Consensus 239 ~~~v~~~~---g~--~i~~d~vv~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~ 312 (434)
+.++...+ |+ .++-+-|++-+|..||+++++..+.+ ..|-|.||....||+|+|||+|||+..+.
T Consensus 423 V~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~vel~~rGEIivD~~g~TsvpGvFAAGD~T~~~y--------- 493 (520)
T COG3634 423 VTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGAVELNRRGEIIVDARGETNVPGVFAAGDCTTVPY--------- 493 (520)
T ss_pred ecceEEEeccCCceeEEEeeeeEEEEecccChhHhhchhhcCcCccEEEecCCCcCCCceeecCcccCCcc---------
Confidence 55555533 32 46678899999999999999988888 67899999999999999999999998775
Q ss_pred ccHHHHHHHHHHHHHHHhc
Q 013890 313 EHVDHARKSAEQAVKTIMA 331 (434)
Q Consensus 313 ~~~~~A~~~g~~aa~~i~~ 331 (434)
+++..|+..|..|+.+.+.
T Consensus 494 KQIIIamG~GA~AaL~AFD 512 (520)
T COG3634 494 KQIIIAMGEGAKASLSAFD 512 (520)
T ss_pred ceEEEEecCcchhhhhhhh
Confidence 3444455566666655443
No 73
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.96 E-value=1.4e-27 Score=230.56 Aligned_cols=292 Identities=18% Similarity=0.255 Sum_probs=192.8
Q ss_pred cCcEEEECCCHHHHHHHHHHHH--cCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAK--QGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY 82 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~--~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (434)
.++|+||||||||++||..|++ .|++ |+|+|+.+.. |. ++...-.+..+... .....+..++
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~---Vtv~E~~p~p-gG-------lvr~gvaP~~~~~k-----~v~~~~~~~~ 89 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGAR---VDIIERLPTP-FG-------LVRSGVAPDHPETK-----NVTNQFSRVA 89 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCe---EEEEecCCCC-cc-------eEeeccCCCcchhH-----HHHHHHHHHH
Confidence 5789999999999999999997 4655 9999999752 21 12111111111100 0011234556
Q ss_pred HHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCc-ccccCCCCCCCCCCCEEEEeCHHHHH-------HH
Q 013890 83 KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTV-LRLTDFGVEGADAKNIFYLREIDDAD-------KL 154 (434)
Q Consensus 83 ~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~-~~p~~~~i~g~~~~~v~~~~~~~~~~-------~l 154 (434)
...+++++.+..+ ++.+.+.+- ...||+||||||+.+ ..++ ++|.+.++++...++.... .+
T Consensus 90 ~~~~v~~~~nv~v------g~dvtl~~L-~~~yDaVIlAtGa~~~~~l~---IpG~d~~gV~~a~~fl~~~ng~~d~~~~ 159 (491)
T PLN02852 90 TDDRVSFFGNVTL------GRDVSLSEL-RDLYHVVVLAYGAESDRRLG---IPGEDLPGVLSAREFVWWYNGHPDCVHL 159 (491)
T ss_pred HHCCeEEEcCEEE------CccccHHHH-hhhCCEEEEecCCCCCCCCC---CCCCCCCCeEEHHHHHHHhhcchhhhhh
Confidence 6678888876443 223333332 247999999999986 4455 6888888999766542211 11
Q ss_pred HHHHHhcCCCcEEEECCCHHHHHHHHHHHHC--------------------CC-eEEEEeeCCccCCcccCHHH------
Q 013890 155 VEAIKAKKNGKAVVVGGGYIGLELSAALKIN--------------------NI-DVSMVYPEPWCMPRLFTADI------ 207 (434)
Q Consensus 155 ~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~--------------------g~-~v~~~~~~~~~~~~~~~~~~------ 207 (434)
...+ ..+++++|||+|++|+|+|..|.+. +. +|+++.|....-..+..+++
T Consensus 160 ~~~~--~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l 237 (491)
T PLN02852 160 PPDL--KSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGL 237 (491)
T ss_pred hhcc--cCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhcc
Confidence 1111 1478999999999999999998875 54 59999887642211111111
Q ss_pred -------------------------------HHHHHHHHHH---------cCcEEEcCCeEEEEEec--CCCcEEEEEeC
Q 013890 208 -------------------------------AAFYEGYYAN---------KGIKIIKGTVAVGFTTN--ADGEVNEVKLK 245 (434)
Q Consensus 208 -------------------------------~~~~~~~l~~---------~gV~~~~~~~v~~i~~~--~~g~~~~v~~~ 245 (434)
.+.+.+...+ ++|.|++...+.+|... +++++.++++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~ 317 (491)
T PLN02852 238 KNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLE 317 (491)
T ss_pred CCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEE
Confidence 1122222222 57999999999999742 23577777663
Q ss_pred -----------------CC--cEEEcCEEEEccCCc--cChhh-hhc--cccc-cCCcEEeCCCCCCCCCceEEeccccc
Q 013890 246 -----------------DG--RTLEADIVVVGVGGR--PLISL-FKG--QVAE-NKGGIETDDFFKTSADDVYAVGDVAT 300 (434)
Q Consensus 246 -----------------~g--~~i~~d~vv~a~G~~--p~~~~-~~~--~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~ 300 (434)
.| ++++||.||.++|++ |...+ +.. ++.. .+|+|.+|+.++|++|+|||+|||..
T Consensus 318 ~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T~ipGvyAaGDi~~ 397 (491)
T PLN02852 318 RTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGADTEPGLYVVGWLKR 397 (491)
T ss_pred EeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCccCCCCEEEeeeEec
Confidence 12 258999999999998 55553 322 2333 57899999888999999999999998
Q ss_pred ccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013890 301 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 301 ~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
.+. ..+..++.+|+.++.+|....
T Consensus 398 Gp~---------gvI~t~~~dA~~ta~~i~~d~ 421 (491)
T PLN02852 398 GPT---------GIIGTNLTCAEETVASIAEDL 421 (491)
T ss_pred CCC---------CeeeecHhhHHHHHHHHHHHH
Confidence 664 356777888999999988654
No 74
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.96 E-value=2.3e-27 Score=240.37 Aligned_cols=287 Identities=22% Similarity=0.266 Sum_probs=197.0
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++|+|||||++||++|..|++.|++ |+|+|+++... +++.. .+|.+... ........+++++
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~---Vtv~e~~~~~G--------G~l~~----gip~~~l~--~~~~~~~~~~~~~ 372 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQ---VDVFDRHPEIG--------GMLTF----GIPPFKLD--KTVLSQRREIFTA 372 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCc---EEEEeCCCCCC--------Ceeec----cCCcccCC--HHHHHHHHHHHHH
Confidence 57999999999999999999999987 99999997532 11111 11221110 0001223466778
Q ss_pred CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcc-cccCCCCCCCCCCCEEEEeCHHHH-----HHHHHH-
Q 013890 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL-RLTDFGVEGADAKNIFYLREIDDA-----DKLVEA- 157 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~-~p~~~~i~g~~~~~v~~~~~~~~~-----~~l~~~- 157 (434)
.|++++.++.+.. .+...+ ....||.+++|||+.+. .++ +++.+..++++...+... ..+...
T Consensus 373 ~Gv~~~~~~~v~~------~~~~~~-l~~~~DaV~latGa~~~~~~~---i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~ 442 (639)
T PRK12809 373 MGIDFHLNCEIGR------DITFSD-LTSEYDAVFIGVGTYGMMRAD---LPHEDAPGVIQALPFLTAHTRQLMGLPESE 442 (639)
T ss_pred CCeEEEcCCccCC------cCCHHH-HHhcCCEEEEeCCCCCCCCCC---CCCCccCCcEeHHHHHHHHHHhhccCcccc
Confidence 8999999865521 122211 23469999999999753 333 677777787763222111 000000
Q ss_pred ---HHhcCCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCCcc-CCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEE
Q 013890 158 ---IKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232 (434)
Q Consensus 158 ---l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~-~v~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~ 232 (434)
+....+++++|+|+|+++++.|..+.++|. +|+++.+.+.. ++. .+.++ ..+++.||++++++.++++.
T Consensus 443 ~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~-~~~e~-----~~a~~eGv~~~~~~~~~~i~ 516 (639)
T PRK12809 443 EYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPG-SRKEV-----VNAREEGVEFQFNVQPQYIA 516 (639)
T ss_pred ccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHHHH-----HHHHHcCCeEEeccCCEEEE
Confidence 011247899999999999999999989985 79999987644 332 22222 23578899999999999998
Q ss_pred ecCCCcEEEEEe---C------CC-----------cEEEcCEEEEccCCccChh-hhh-ccccc-cCCcEEeCC----CC
Q 013890 233 TNADGEVNEVKL---K------DG-----------RTLEADIVVVGVGGRPLIS-LFK-GQVAE-NKGGIETDD----FF 285 (434)
Q Consensus 233 ~~~~g~~~~v~~---~------~g-----------~~i~~d~vv~a~G~~p~~~-~~~-~~~~~-~~g~i~vd~----~~ 285 (434)
.+++|++..+.+ . +| .++++|.||+|+|+.|+.. ++. .++.. .+|.|.||+ ++
T Consensus 517 ~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~ 596 (639)
T PRK12809 517 CDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPT 596 (639)
T ss_pred ECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCc
Confidence 655676665532 1 12 3689999999999999753 443 35555 457899985 48
Q ss_pred CCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCC
Q 013890 286 KTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG 334 (434)
Q Consensus 286 ~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 334 (434)
||+.|+|||+||++..+ .++..|+.+|+.||.+|...+.
T Consensus 597 ~Ts~~gVfA~GD~~~g~----------~~vv~Ai~~Gr~AA~~i~~~l~ 635 (639)
T PRK12809 597 QTHLKKVFAGGDAVHGA----------DLVVTAMAAGRQAARDMLTLFD 635 (639)
T ss_pred ccCCCCEEEcCCCCCCc----------hHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999754 4577899999999999986543
No 75
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.4e-28 Score=200.69 Aligned_cols=281 Identities=22% Similarity=0.218 Sum_probs=203.9
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecC-CCCCCCCHh
Q 013890 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVG-SGGERLLPE 80 (434)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 80 (434)
|..+-+|+|||+|||+..||+++++..++ -+|+|---... ......+.......++|+|+..+. ....+...+
T Consensus 5 ~~h~e~v~IiGSGPAa~tAAiYaaraelk---PllfEG~~~~~---i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrk 78 (322)
T KOG0404|consen 5 MTHNENVVIIGSGPAAHTAAIYAARAELK---PLLFEGMMANG---IAPGGQLTTTTDVENFPGFPDGITGPELMDKMRK 78 (322)
T ss_pred ceeeeeEEEEccCchHHHHHHHHhhcccC---ceEEeeeeccC---cCCCceeeeeeccccCCCCCcccccHHHHHHHHH
Confidence 33445899999999999999999998877 48887653211 122334455556788888875432 233345556
Q ss_pred HHHHCCcEEEcCCeEEEEeCCCCEEE-cCCCcEEEeceEEEccCCCcccccCCCC-CC-CCCCCEEEEeCHHHHHHHHHH
Q 013890 81 WYKEKGIELILSTEIVRADIASKTLL-SATGLIFKYQILVIATGSTVLRLTDFGV-EG-ADAKNIFYLREIDDADKLVEA 157 (434)
Q Consensus 81 ~~~~~~v~~~~~~~v~~i~~~~~~v~-~~~~~~~~~d~lilAtG~~~~~p~~~~i-~g-~~~~~v~~~~~~~~~~~l~~~ 157 (434)
...++|.+++.. .|.+++...+-.. ..+.+.+.+|.+|+|||+..+....++- ++ ....++..+.-++.+..+
T Consensus 79 qs~r~Gt~i~tE-tVskv~~sskpF~l~td~~~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAVCDGaapi--- 154 (322)
T KOG0404|consen 79 QSERFGTEIITE-TVSKVDLSSKPFKLWTDARPVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAVCDGAAPI--- 154 (322)
T ss_pred HHHhhcceeeee-ehhhccccCCCeEEEecCCceeeeeEEEecccceeeeecCCCCcchHHhcccchhhcccCcchh---
Confidence 667789999986 7888888776432 3466789999999999998877663321 11 123444444444444332
Q ss_pred HHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCC
Q 013890 158 IKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 237 (434)
Q Consensus 158 l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g 237 (434)
++.|-.+|||+|.+++|-|.+|.+++.+|+++.|.+.+-.+ .. +.++..+.-+|+++.++.+.+...+ .+
T Consensus 155 ---frnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRAs---~~---Mq~ra~~npnI~v~~nt~~~ea~gd-~~ 224 (322)
T KOG0404|consen 155 ---FRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRAS---KI---MQQRAEKNPNIEVLYNTVAVEALGD-GK 224 (322)
T ss_pred ---hcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhHH---HH---HHHHHhcCCCeEEEechhhhhhccC-cc
Confidence 15788999999999999999999999999999999876541 22 2334556778999999988877662 22
Q ss_pred c-----EEEEEeCCCcEEEcCEEEEccCCccChhhhhccccc-cCCcEEeC-CCCCCCCCceEEeccccccc
Q 013890 238 E-----VNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETD-DFFKTSADDVYAVGDVATFP 302 (434)
Q Consensus 238 ~-----~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~~~~~~-~~g~i~vd-~~~~t~~~~iya~Gd~~~~~ 302 (434)
. +..+.+.+-+.++++-+++++|..|++.+++..+++ ++|+|.+- ..-.||+|++||+||+....
T Consensus 225 ~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~gqve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~k 296 (322)
T KOG0404|consen 225 LLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKGQVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKK 296 (322)
T ss_pred cccceEEEecccCcccccccceeEEEecCCchhhHhcCceeeccCceEEeccCcccccccceeeccccchHH
Confidence 2 223333444679999999999999999999988888 78898888 56788999999999999754
No 76
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.95 E-value=4.5e-26 Score=228.63 Aligned_cols=285 Identities=21% Similarity=0.298 Sum_probs=192.1
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+|+|||+||+||++|..|+++|++ |+|+|+.+.... ++. ..+|.+... ........+.+.+
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~---V~v~e~~~~~GG--------~l~----~gip~~~~~--~~~~~~~l~~~~~ 199 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHA---VTIFEAGPKLGG--------MMR----YGIPAYRLP--REVLDAEIQRILD 199 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCCC--------eee----ecCCCccCC--HHHHHHHHHHHHH
Confidence 46899999999999999999999986 999999875321 111 112222110 0001122345667
Q ss_pred CCcEEEcCCeE-EEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCC
Q 013890 85 KGIELILSTEI-VRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN 163 (434)
Q Consensus 85 ~~v~~~~~~~v-~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~ 163 (434)
.|+++..++.+ .++..+. ....||.+++|||+.+..+. .+++.+..+++..-.+.. ..........+
T Consensus 200 ~Gv~~~~~~~~~~~~~~~~--------~~~~~D~Vi~AtG~~~~~~~--~i~g~~~~gv~~~~~~l~--~~~~~~~~~~g 267 (564)
T PRK12771 200 LGVEVRLGVRVGEDITLEQ--------LEGEFDAVFVAIGAQLGKRL--PIPGEDAAGVLDAVDFLR--AVGEGEPPFLG 267 (564)
T ss_pred CCCEEEeCCEECCcCCHHH--------HHhhCCEEEEeeCCCCCCcC--CCCCCccCCcEEHHHHHH--HhhccCCcCCC
Confidence 89988887554 2211110 11258999999998753322 256665556554322211 11100012247
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC-CeEEEEeeCCcc-CCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEE
Q 013890 164 GKAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNE 241 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g-~~v~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~ 241 (434)
++++|+|+|..+++.+..+.+++ .+|+++.+.+.. ++. .+..+ +.+.+.||++++++.+.++..++++.+ +
T Consensus 268 k~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~-~~~~~-----~~a~~~GVki~~~~~~~~i~~~~~~~~-~ 340 (564)
T PRK12771 268 KRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPA-HDEEI-----EEALREGVEINWLRTPVEIEGDENGAT-G 340 (564)
T ss_pred CCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCC-CHHHH-----HHHHHcCCEEEecCCcEEEEcCCCCEE-E
Confidence 89999999999999999999998 679998877542 222 22222 234568999999999999976444432 3
Q ss_pred EE-----e----CCC---------cEEEcCEEEEccCCccChhhhhc--cccccCCcEEeCC-CCCCCCCceEEeccccc
Q 013890 242 VK-----L----KDG---------RTLEADIVVVGVGGRPLISLFKG--QVAENKGGIETDD-FFKTSADDVYAVGDVAT 300 (434)
Q Consensus 242 v~-----~----~~g---------~~i~~d~vv~a~G~~p~~~~~~~--~~~~~~g~i~vd~-~~~t~~~~iya~Gd~~~ 300 (434)
++ . ++| .++++|.||+|+|..|+..++.. ++...+|+|.||+ +++|++|+|||+|||+.
T Consensus 341 v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~~ 420 (564)
T PRK12771 341 LRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVP 420 (564)
T ss_pred EEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhccCcccCCCCEEeCCCCccCCCCCEEeccCcCC
Confidence 22 1 222 37999999999999999887763 4444578899998 78999999999999986
Q ss_pred ccccccCcccccccHHHHHHHHHHHHHHHhccCCC
Q 013890 301 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 335 (434)
Q Consensus 301 ~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 335 (434)
.+ .++..|..+|+.||.+|...+.+
T Consensus 421 g~----------~~v~~Av~~G~~aA~~i~~~L~g 445 (564)
T PRK12771 421 GP----------RTVTTAIGHGKKAARNIDAFLGG 445 (564)
T ss_pred Cc----------hHHHHHHHHHHHHHHHHHHHHcC
Confidence 44 46788999999999999766654
No 77
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.93 E-value=1.1e-24 Score=211.24 Aligned_cols=287 Identities=16% Similarity=0.168 Sum_probs=183.1
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCCCCcc--------------ccccC-------CCCC
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YERPALS--------------KAYLF-------PEGT 60 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~--~~~~~~~--------------~~~~~-------~~~~ 60 (434)
..++|+|||||+|||+||++|++.|++ |+|+|+++..+ |...... ...++ +...
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~---v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~ 85 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHT---VVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPREC 85 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCe---EEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhh
Confidence 468999999999999999999999987 99999987642 1110000 00000 0000
Q ss_pred CCCCCcceec--------------CCCCCCCCHhHHHHCCcE--EEcCCeEEEEeCCCCE--EEcCCC----cEEEeceE
Q 013890 61 ARLPGFHVCV--------------GSGGERLLPEWYKEKGIE--LILSTEIVRADIASKT--LLSATG----LIFKYQIL 118 (434)
Q Consensus 61 ~~~~~~~~~~--------------~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~~~--v~~~~~----~~~~~d~l 118 (434)
..++.++... .....+++.++.++.++. +.++++|+.+++.++. |.+.++ .+..||+|
T Consensus 86 m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~V 165 (461)
T PLN02172 86 MGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAV 165 (461)
T ss_pred ccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEE
Confidence 0111111100 000112333444567777 7888999999876553 444322 24679999
Q ss_pred EEccC--CCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 013890 119 VIATG--STVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 196 (434)
Q Consensus 119 ilAtG--~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~ 196 (434)
|+||| +.|+.|+++|+.... ..+++.+++.+...+ ++|+|+|||+|.+|+|+|..|...+.+|+++.|..
T Consensus 166 IvAtG~~~~P~~P~ipG~~~f~-G~~iHs~~yr~~~~~-------~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 166 VVCNGHYTEPNVAHIPGIKSWP-GKQIHSHNYRVPDPF-------KNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred EEeccCCCCCcCCCCCCcccCC-ceEEEecccCCcccc-------CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 99999 678888854443332 233444444433322 68999999999999999999999999999999875
Q ss_pred ccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhhhccccccC
Q 013890 197 WCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENK 276 (434)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~~~~~~~~ 276 (434)
.+.. . ..+.....+++.+..|..+.. ++ .|.++||+.+++|.||+|||++++.++++. .
T Consensus 238 ~~~~--~---------~~~~~~~~~v~~~~~I~~~~~--~g---~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~-----~ 296 (461)
T PLN02172 238 ESDT--Y---------EKLPVPQNNLWMHSEIDTAHE--DG---SIVFKNGKVVYADTIVHCTGYKYHFPFLET-----N 296 (461)
T ss_pred cccc--c---------ccCcCCCCceEECCcccceec--CC---eEEECCCCCccCCEEEECCcCCccccccCc-----c
Confidence 4311 0 011112344556666766643 44 488999999999999999999999988753 2
Q ss_pred CcEEeCCCC------C---CC-CCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013890 277 GGIETDDFF------K---TS-ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 277 g~i~vd~~~------~---t~-~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
+.+.+|++. + .. .|+++.+|=.... ..+..+..|++.+|+-+.+..
T Consensus 297 ~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~-----------~~f~~~E~Qa~~~a~v~sG~~ 352 (461)
T PLN02172 297 GYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMG-----------IQFVMFEIQSKWVAAVLSGRV 352 (461)
T ss_pred cceeeCCCcchhhHHhhcCCCCCCcEEEEeccccc-----------cCchhHHHHHHHHHHHHcCCC
Confidence 344454321 1 12 3899999854322 234456678888888776653
No 78
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.90 E-value=1.1e-22 Score=177.02 Aligned_cols=308 Identities=20% Similarity=0.270 Sum_probs=213.1
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHH
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
+.++|+|||||.+|++.|..+.++ +...+|-|+|+.+.+.|+-. .. +.......+.. ......-+.
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rk-l~~g~vgIvep~e~HyYQPg-fT---LvGgGl~~l~~---------srr~~a~li 103 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRK-LGSGSVGIVEPAEDHYYQPG-FT---LVGGGLKSLDS---------SRRKQASLI 103 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhh-cCCCceEEecchhhcccCcc-eE---Eeccchhhhhh---------ccCcccccc
Confidence 568999999999999999999886 44677999999988776521 10 11111111100 001111122
Q ss_pred HCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCC-CCCCCCCEEEEeCHHHHHHHHHHHHhcC
Q 013890 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGV-EGADAKNIFYLREIDDADKLVEAIKAKK 162 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i-~g~~~~~v~~~~~~~~~~~l~~~l~~~~ 162 (434)
..+..++. ..|..+++++++|.+.+|++|.||++|||+|-.-..-.+.|+ ++.+.++|.+..+...+++....+.+.+
T Consensus 104 P~~a~wi~-ekv~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk 182 (446)
T KOG3851|consen 104 PKGATWIK-EKVKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFK 182 (446)
T ss_pred cCCcHHHH-HHHHhcCCCcCeEEccCCcEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHHhcc
Confidence 23444445 378888999999999999999999999999987655554443 3457889999999998888888887765
Q ss_pred CCcEEE---------ECCCHHHHHHHHH-HHHCCC--eEEEEeeCCccCCcccC-HHHHHHHHHHHHHcCcEEEcCCeEE
Q 013890 163 NGKAVV---------VGGGYIGLELSAA-LKINNI--DVSMVYPEPWCMPRLFT-ADIAAFYEGYYANKGIKIIKGTVAV 229 (434)
Q Consensus 163 ~~~vvV---------vG~g~~g~e~a~~-l~~~g~--~v~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gV~~~~~~~v~ 229 (434)
..+.+. .|+-.-.+-++.. +++.|. ++.++...+ ++..|. ...++.+.+..++++|++.....+.
T Consensus 183 ~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Ts--l~~iFgVk~Y~~AL~k~~~~rni~vn~krnLi 260 (446)
T KOG3851|consen 183 KGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTS--LPTIFGVKHYADALEKVIQERNITVNYKRNLI 260 (446)
T ss_pred CCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecC--ccceecHHHHHHHHHHHHHhcceEeeeccceE
Confidence 555443 2555555666654 455554 344443221 222233 5678899999999999999988888
Q ss_pred EEEecCCCcEEEEEeCCC--cEEEcCEEEEccCCccChhhhhccccccCCcEEeCC-CCCC-CCCceEEecccccccccc
Q 013890 230 GFTTNADGEVNEVKLKDG--RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDD-FFKT-SADDVYAVGDVATFPMKL 305 (434)
Q Consensus 230 ~i~~~~~g~~~~v~~~~g--~~i~~d~vv~a~G~~p~~~~~~~~~~~~~g~i~vd~-~~~t-~~~~iya~Gd~~~~~~~~ 305 (434)
++..++...+....-+-| ++++++++-+....++...+.+..+....|++.||. ++|. ..||||++|||.+.|+.
T Consensus 261 EV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~pe~l~~s~~adktGfvdVD~~TlQs~kypNVFgiGDc~n~Pns- 339 (446)
T KOG3851|consen 261 EVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPMSTPEVLANSDLADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNS- 339 (446)
T ss_pred EEeccchhhHHHhcCCCCceeEEeeeeeeccCCCCChhhhhcCcccCcccceecChhhhccccCCCceeeccccCCCch-
Confidence 888733322211111214 478899999988888877777666666779999994 6787 89999999999999876
Q ss_pred cCcccccccHHHHHHHHHHHHHHHhccCCCC
Q 013890 306 YREMRRVEHVDHARKSAEQAVKTIMATEGGK 336 (434)
Q Consensus 306 ~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 336 (434)
++.+.+..|..++-+|+..-.+|+
T Consensus 340 -------KTaAAvaaq~~vv~~nl~~~m~g~ 363 (446)
T KOG3851|consen 340 -------KTAAAVAAQSPVVDKNLTQVMQGK 363 (446)
T ss_pred -------hhHHHHHhcCchhhhhHHHHhcCC
Confidence 666666678888888887655554
No 79
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.89 E-value=2.5e-22 Score=170.10 Aligned_cols=267 Identities=24% Similarity=0.322 Sum_probs=178.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC-CccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHC
Q 013890 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP-ALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
+.+|||||+||.+||..|+.+- +.++|+++...+..---.+ ..-..++...... ++-....
T Consensus 1 kfivvgggiagvscaeqla~~~-psa~illitass~vksvtn~~~i~~ylekfdv~-----------------eq~~~el 62 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLE-PSAEILLITASSFVKSVTNYQKIGQYLEKFDVK-----------------EQNCHEL 62 (334)
T ss_pred CeEEEcCccccccHHHHHHhhC-CCCcEEEEeccHHHHHHhhHHHHHHHHHhcCcc-----------------ccchhhh
Confidence 3689999999999999999974 5678999988764210000 0000011000000 0000011
Q ss_pred CcEE--EcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCC
Q 013890 86 GIEL--ILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN 163 (434)
Q Consensus 86 ~v~~--~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~ 163 (434)
|.++ +.+ .|..++..++.+++.+|.++.|++|.+|||.+|.... ++ -.+.+...++.+.++.++..+. +.
T Consensus 63 g~~f~~~~~-~v~~~~s~ehci~t~~g~~~ky~kKOG~tg~kPklq~----E~-~n~~Iv~irDtDsaQllq~kl~--ka 134 (334)
T KOG2755|consen 63 GPDFRRFLN-DVVTWDSSEHCIHTQNGEKLKYFKLCLCTGYKPKLQV----EG-INPKIVGIRDTDSAQLLQCKLV--KA 134 (334)
T ss_pred cccHHHHHH-hhhhhccccceEEecCCceeeEEEEEEecCCCcceee----cC-CCceEEEEecCcHHHHHHHHHh--hc
Confidence 1111 122 2566677889999999999999999999999997543 44 3467888889999999988887 57
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcC------------cEEEcCCe----
Q 013890 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKG------------IKIIKGTV---- 227 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g------------V~~~~~~~---- 227 (434)
|+|+|+|.|-+++|++.++. +.+|+|....+.+...+|++.+++.+...++..+ ++.+.++.
T Consensus 135 K~VlilgnGgia~El~yElk--~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~v 212 (334)
T KOG2755|consen 135 KIVLILGNGGIAMELTYELK--ILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNV 212 (334)
T ss_pred ceEEEEecCchhHHHHHHhh--cceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCc
Confidence 89999999999999998874 6789999999998888888888777666552111 11111000
Q ss_pred -------------------------------EEEE-EecCCCcEEEEEeCCC--cEEEcCEEEEccCCccChhhhhc-cc
Q 013890 228 -------------------------------AVGF-TTNADGEVNEVKLKDG--RTLEADIVVVGVGGRPLISLFKG-QV 272 (434)
Q Consensus 228 -------------------------------v~~i-~~~~~g~~~~v~~~~g--~~i~~d~vv~a~G~~p~~~~~~~-~~ 272 (434)
+..+ .+++.+.+......++ ..+.+|.+++|+|..||.+++-. .+
T Consensus 213 g~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~~l 292 (334)
T KOG2755|consen 213 GPALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNKML 292 (334)
T ss_pred ccccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhcccccccccccccceeeeeEEEeccccCcCceEEecChh
Confidence 0000 0000111100111111 26889999999999999996543 34
Q ss_pred cc-cCCcEEeCCCCCCCCCceEEecccccc
Q 013890 273 AE-NKGGIETDDFFKTSADDVYAVGDVATF 301 (434)
Q Consensus 273 ~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~ 301 (434)
.. ++|++.||+.|+|+.|++||+||++..
T Consensus 293 q~~edggikvdd~m~tslpdvFa~gDvctt 322 (334)
T KOG2755|consen 293 QITEDGGIKVDDAMETSLPDVFAAGDVCTT 322 (334)
T ss_pred hhccccCeeehhhccccccceeeecceecc
Confidence 44 789999999999999999999999974
No 80
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.87 E-value=3.8e-21 Score=189.02 Aligned_cols=299 Identities=16% Similarity=0.231 Sum_probs=156.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CC--CCC------ccccccC--CCCCCCCCCcceecCCC
Q 013890 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YE--RPA------LSKAYLF--PEGTARLPGFHVCVGSG 73 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~--~~--~~~------~~~~~~~--~~~~~~~~~~~~~~~~~ 73 (434)
++|+|||||++||++|..|.+.|++ ++++|+++..+ |. ... ..+.+.. +.....+++|+......
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~---~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p 78 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLE---VTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYP 78 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-E---EEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCC---CeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCC
Confidence 6899999999999999999999987 99999998743 11 000 0000000 00111122222111100
Q ss_pred -------CCCCCHhHHHHCCc--EEEcCCeEEEEeCCCC-------EEEcCC-C--cEEEeceEEEccCC--Cccccc--
Q 013890 74 -------GERLLPEWYKEKGI--ELILSTEIVRADIASK-------TLLSAT-G--LIFKYQILVIATGS--TVLRLT-- 130 (434)
Q Consensus 74 -------~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~~-------~v~~~~-~--~~~~~d~lilAtG~--~~~~p~-- 130 (434)
..+++..+.++.++ .+.++++|.++....+ .|++.+ + ++-.+|+||+|||. .|.+|.
T Consensus 79 ~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~ 158 (531)
T PF00743_consen 79 DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPS 158 (531)
T ss_dssp SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB----
T ss_pred CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhh
Confidence 11233344445555 5788899998875321 354433 3 24579999999995 577774
Q ss_pred CCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCcc-CCccc------
Q 013890 131 DFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC-MPRLF------ 203 (434)
Q Consensus 131 ~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~-~~~~~------ 203 (434)
.+|++... ..+++.+++.+...+ ++|||+|||+|.+|+++|..+++...+|++..|...+ +++..
T Consensus 159 ~~G~e~F~-G~i~HS~~yr~~~~f-------~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~ 230 (531)
T PF00743_consen 159 FPGLEKFK-GEIIHSKDYRDPEPF-------KGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPF 230 (531)
T ss_dssp -CTGGGHC-SEEEEGGG--TGGGG-------TTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC----------------
T ss_pred hhhhhcCC-eeEEccccCcChhhc-------CCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccccc
Confidence 44443333 467777777665543 7999999999999999999999999999988877543 22211
Q ss_pred ----------------CHHHHHHHH-H--------------------------------HHHHcCcEEEcCCeEEEEEec
Q 013890 204 ----------------TADIAAFYE-G--------------------------------YYANKGIKIIKGTVAVGFTTN 234 (434)
Q Consensus 204 ----------------~~~~~~~~~-~--------------------------------~l~~~gV~~~~~~~v~~i~~~ 234 (434)
+..+...+. + .+....|++. ..|.++..
T Consensus 231 D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk--~~I~~~~~- 307 (531)
T PF00743_consen 231 DMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVK--PDIKRFTE- 307 (531)
T ss_dssp --------------------------------------------------------------------E--E-EEEE-S-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccc-
Confidence 111111110 0 1111122221 12333321
Q ss_pred CCCcEEEEEeCCCcEE-EcCEEEEccCCccChhhhhccccc-cCCcEEeCCCC---CCCCCceEEecccccccccccCcc
Q 013890 235 ADGEVNEVKLKDGRTL-EADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFF---KTSADDVYAVGDVATFPMKLYREM 309 (434)
Q Consensus 235 ~~g~~~~v~~~~g~~i-~~d~vv~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~---~t~~~~iya~Gd~~~~~~~~~~~~ 309 (434)
.+|.+.||+++ ++|.||+|||++....+++..+.. .++.+..-.++ +..+|++..+|=+....
T Consensus 308 -----~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~~~~~~~LYk~vfp~~~~~ptLafIG~~~~~g------- 375 (531)
T PF00743_consen 308 -----NSVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIKVDDNRVRLYKHVFPPNLDHPTLAFIGLVQPFG------- 375 (531)
T ss_dssp -----SEEEETTSEEEEE-SEEEE---EE---TTB-TTTT-S-SSSSSEETTTEETETTSTTEEESS-SBSSS-------
T ss_pred -----cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------
Confidence 25778999875 699999999999998888665332 33322111121 12457888888654211
Q ss_pred cccccHHHHHHHHHHHHHHHhccC
Q 013890 310 RRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 310 ~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
..+..+..|++.+|+-+.+..
T Consensus 376 ---~~fp~~ElQArw~a~v~sG~~ 396 (531)
T PF00743_consen 376 ---SIFPIFELQARWAARVFSGRV 396 (531)
T ss_dssp ----HHHHHHHHHHHHHHHHTTSS
T ss_pred ---ccccccccccccccccccccc
Confidence 235567789998888776653
No 81
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.86 E-value=3.9e-21 Score=183.98 Aligned_cols=288 Identities=21% Similarity=0.253 Sum_probs=198.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHC
Q 013890 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
.+|.||||||||++||..|++.|+. |+++|+.+... +++... +|.+... ....+...+.+++.
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~---Vtv~e~~~~~G--------Gll~yG----IP~~kl~--k~i~d~~i~~l~~~ 186 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHD---VTVFERVALDG--------GLLLYG----IPDFKLP--KDILDRRLELLERS 186 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCe---EEEeCCcCCCc--------eeEEec----Cchhhcc--chHHHHHHHHHHHc
Confidence 6899999999999999999999987 99999987632 122111 2322211 01123445677888
Q ss_pred CcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCC-cccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHH----h
Q 013890 86 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIK----A 160 (434)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~-~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~----~ 160 (434)
|++|+.++++- +.++.+. -.-.||.++++||+. |+..+ ++|.+.++++...++........... .
T Consensus 187 Gv~~~~~~~vG------~~it~~~-L~~e~Dav~l~~G~~~~~~l~---i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~ 256 (457)
T COG0493 187 GVEFKLNVRVG------RDITLEE-LLKEYDAVFLATGAGKPRPLD---IPGEDAKGVAFALDFLTRLNKEVLGDFAEDR 256 (457)
T ss_pred CeEEEEcceEC------CcCCHHH-HHHhhCEEEEeccccCCCCCC---CCCcCCCcchHHHHHHHHHHHHHhccccccc
Confidence 99999986542 1222211 123569999999975 54444 78887788886544433322211110 0
Q ss_pred ---cCCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCCcc-CCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecC
Q 013890 161 ---KKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA 235 (434)
Q Consensus 161 ---~~~~~vvVvG~g~~g~e~a~~l~~~g~-~v~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~ 235 (434)
..+++++|||+|.++++++....++|. +|+.+.+...- -...++....+...+...++|+.+.+.....++..++
T Consensus 257 ~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e 336 (457)
T COG0493 257 TPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNE 336 (457)
T ss_pred CCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecC
Confidence 123899999999999999999999998 67776422211 1101233345556677788899999999889998878
Q ss_pred CCcEEEEEeCC-------------------C--cEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCCCC-CCCC
Q 013890 236 DGEVNEVKLKD-------------------G--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFF-KTSA 289 (434)
Q Consensus 236 ~g~~~~v~~~~-------------------g--~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~-~t~~ 289 (434)
+|++..+.+.. | ..+++|.|+.|+|+.++.... ...+.. ..|.+.+|+.+ +|+.
T Consensus 337 ~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~ 416 (457)
T COG0493 337 GGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSI 416 (457)
T ss_pred CCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccC
Confidence 88877654321 2 257899999999988875432 223444 56899999998 9999
Q ss_pred CceEEecccccccccccCcccccccHHHHHHHHHHHHHHHh
Q 013890 290 DDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM 330 (434)
Q Consensus 290 ~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 330 (434)
|++||.||+.... ..+..|+.+|+.+|+.|-
T Consensus 417 ~~vfa~gD~~~g~----------~~vv~ai~eGr~aak~i~ 447 (457)
T COG0493 417 PGVFAGGDAVRGA----------ALVVWAIAEGREAAKAID 447 (457)
T ss_pred CCeeeCceeccch----------hhhhhHHhhchHHHHhhh
Confidence 9999999999853 457788999999998875
No 82
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.85 E-value=1.6e-19 Score=183.09 Aligned_cols=273 Identities=12% Similarity=0.156 Sum_probs=162.0
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC--C--C---------CCccccccCCCCCCCCCCcceecC
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY--E--R---------PALSKAYLFPEGTARLPGFHVCVG 71 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~--~--~---------~~~~~~~~~~~~~~~~~~~~~~~~ 71 (434)
.++|+||||||||++||++|++.|++ |+++|+.+..+. . . +.+...... ....+..|...
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~---Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~--~~GG~~~yGIp-- 455 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHN---VTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPR--GFGGVAEYGIT-- 455 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCe---EEEEccccccccccccccccchhhhhccchhhhccc--cCCcccccCcc--
Confidence 57999999999999999999999987 999998743111 1 0 000000000 00001111110
Q ss_pred CCCCCCCH------hHHHHCC--cEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCC-CcccccCCCCCCCCCCCE
Q 013890 72 SGGERLLP------EWYKEKG--IELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS-TVLRLTDFGVEGADAKNI 142 (434)
Q Consensus 72 ~~~~~~~~------~~~~~~~--v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~-~~~~p~~~~i~g~~~~~v 142 (434)
..... ..+.+.+ +.++.+.. . +..++.++-....||+|+||||+ .|+.++ ++|.+..++
T Consensus 456 ---~R~~k~~l~~i~~il~~g~~v~~~~gv~-l-----G~dit~edl~~~gyDAV~IATGA~kpr~L~---IPGeda~GV 523 (1028)
T PRK06567 456 ---VRWDKNNLDILRLILERNNNFKYYDGVA-L-----DFNITKEQAFDLGFDHIAFCIGAGQPKVLD---IENFEAKGV 523 (1028)
T ss_pred ---ccchHHHHHHHHHHHhcCCceEEECCeE-E-----CccCCHHHHhhcCCCEEEEeCCCCCCCCCC---CCCccCCCe
Confidence 11111 1122233 55555533 1 12222222134679999999999 688777 677777888
Q ss_pred EEEeCHHHHHHHHHHHH-----h-cCCCcEEEECCCHHHHHHHHHHHH--------------------------------
Q 013890 143 FYLREIDDADKLVEAIK-----A-KKNGKAVVVGGGYIGLELSAALKI-------------------------------- 184 (434)
Q Consensus 143 ~~~~~~~~~~~l~~~l~-----~-~~~~~vvVvG~g~~g~e~a~~l~~-------------------------------- 184 (434)
++..++........... . ..+++++|||||++|+|+|.....
T Consensus 524 ~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h 603 (1028)
T PRK06567 524 KTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAH 603 (1028)
T ss_pred EEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHH
Confidence 87555322211110100 0 025799999999999999983332
Q ss_pred -------------------CCCeEEEEeeCCcc-CCcc--cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEE
Q 013890 185 -------------------NNIDVSMVYPEPWC-MPRL--FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEV 242 (434)
Q Consensus 185 -------------------~g~~v~~~~~~~~~-~~~~--~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v 242 (434)
.|. |+++.|...- ++.. ...++ +...+.||+++.+..+.++..+++|.+.++
T Consensus 604 ~r~~g~~~~~~~v~~l~~~~G~-VtIvYRr~~~empA~~~~~eEv-----~~A~eEGV~f~~~~~P~~i~~d~~g~v~~l 677 (1028)
T PRK06567 604 AKLFKEAKNNEELRKVFNKLGG-ATVYYRGRLQDSPAYKLNHEEL-----IYALALGVDFKENMQPLRINVDKYGHVESV 677 (1028)
T ss_pred HHhhcchhccchhhhhhccCCc-eEEEecCChhhCCCCCCCHHHH-----HHHHHcCcEEEecCCcEEEEecCCCeEEEE
Confidence 222 7887776532 2210 11222 234677999999999999987566777766
Q ss_pred EeC--------------C-C---------------cEEEcCEEEEccCCccChhhhhccccccCCcEEeCCCCCCCCCce
Q 013890 243 KLK--------------D-G---------------RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDV 292 (434)
Q Consensus 243 ~~~--------------~-g---------------~~i~~d~vv~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t~~~~i 292 (434)
++. + + .+++||.||+|+|..||+.+... +..+-++.+++
T Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~~~-----------~~s~~~d~~~~ 746 (1028)
T PRK06567 678 EFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFDED-----------KYSYFGDCNPK 746 (1028)
T ss_pred EEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCccccccc-----------ccccccCCCCc
Confidence 542 1 1 36899999999999999876310 11122234444
Q ss_pred EEecccccccccccCcccccccHHHHHHHHHHHHHHHhc
Q 013890 293 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 331 (434)
Q Consensus 293 ya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 331 (434)
|+ .++..|+.+|+.++.+|..
T Consensus 747 f~------------------Gtvv~A~as~k~~~~~i~~ 767 (1028)
T PRK06567 747 YS------------------GSVVKALASSKEGYDAINK 767 (1028)
T ss_pred cc------------------cHHHHHHHHHHhHHHHHHH
Confidence 44 3567788899999998843
No 83
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.85 E-value=1e-18 Score=158.43 Aligned_cols=316 Identities=12% Similarity=0.148 Sum_probs=198.3
Q ss_pred CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCcccc----------ccCCCCCCC--------
Q 013890 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKA----------YLFPEGTAR-------- 62 (434)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~----------~~~~~~~~~-------- 62 (434)
||++.+|+|.||-||+.|+.|+.|.+.+. .+...+||.+.+.|+-.++..+ +.....+..
T Consensus 1 ~~~~~~DliGIG~GPfNL~LA~ll~e~~~--~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL 78 (436)
T COG3486 1 MMAEVLDLIGIGIGPFNLSLAALLEEHSG--LKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYL 78 (436)
T ss_pred CCCcceeeEEEccCchHHHHHHHhccccC--cceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHH
Confidence 78889999999999999999999998752 3389999999888875443211 111111100
Q ss_pred -----CCCcce----ecCCCCCCCCHhHHHHCCcEEEcCCeEEEE---eCCCC---EEEcCCCcEEEeceEEEccCCCcc
Q 013890 63 -----LPGFHV----CVGSGGERLLPEWYKEKGIELILSTEIVRA---DIASK---TLLSATGLIFKYQILVIATGSTVL 127 (434)
Q Consensus 63 -----~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i---~~~~~---~v~~~~~~~~~~d~lilAtG~~~~ 127 (434)
+-.|.. .....++..+.+|....--.+..+.+|++| +.+.. .+.+.++..+.++.|||.+|.+|.
T Consensus 79 ~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~ 158 (436)
T COG3486 79 HEHGRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPY 158 (436)
T ss_pred HHcchHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcC
Confidence 000000 000011234556666666778888888844 43333 255667779999999999999999
Q ss_pred cccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHC----CCeEEEEeeCCccCCcc-
Q 013890 128 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN----NIDVSMVYPEPWCMPRL- 202 (434)
Q Consensus 128 ~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~----g~~v~~~~~~~~~~~~~- 202 (434)
+|+. +.....+++++...+. ....+.. ..++|.|||+|.+|.|+-..|... ..++.|+.|+..+.+.-
T Consensus 159 IP~~--f~~l~~~~vfHss~~~--~~~~~~~---~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~ 231 (436)
T COG3486 159 IPPC--FRSLIGERVFHSSEYL--ERHPELL---QKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDY 231 (436)
T ss_pred CChH--HhCcCccceeehHHHH--HhhHHhh---cCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCcccc
Confidence 9986 4444556777644332 1211111 234499999999999998888653 44688999998776531
Q ss_pred -------cCHHHH------------------------------HHHHHHH-------HHcCcEEEcCCeEEEEEecCCCc
Q 013890 203 -------FTADIA------------------------------AFYEGYY-------ANKGIKIIKGTVAVGFTTNADGE 238 (434)
Q Consensus 203 -------~~~~~~------------------------------~~~~~~l-------~~~gV~~~~~~~v~~i~~~~~g~ 238 (434)
|.++.. ..+-+.+ .+..|.++.++++..++..++|.
T Consensus 232 Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~ 311 (436)
T COG3486 232 SKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGR 311 (436)
T ss_pred chhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCce
Confidence 222211 1111111 13467899999999999877775
Q ss_pred EEEEEeC-----CCcEEEcCEEEEccCCccChh-hh---hccccc-cCCcEEeCCCCCCCC-----CceEEecccccccc
Q 013890 239 VNEVKLK-----DGRTLEADIVVVGVGGRPLIS-LF---KGQVAE-NKGGIETDDFFKTSA-----DDVYAVGDVATFPM 303 (434)
Q Consensus 239 ~~~v~~~-----~g~~i~~d~vv~a~G~~p~~~-~~---~~~~~~-~~g~i~vd~~~~t~~-----~~iya~Gd~~~~~~ 303 (434)
..+.+. +.+++++|.||+|||++.... ++ .+.+.. ++|...|+..++... -.||+.|-+...+.
T Consensus 312 -~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~htHG 390 (436)
T COG3486 312 -YRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHTHG 390 (436)
T ss_pred -EEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEecccccccc
Confidence 344442 235789999999999986554 33 233444 678999998776521 26999987765443
Q ss_pred cccCcccccccHHHHHHHHHHHHHHHhcc
Q 013890 304 KLYREMRRVEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 304 ~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 332 (434)
. +. +....+...+...++.+++.
T Consensus 391 i--g~----pdLsl~a~Raa~I~~~L~g~ 413 (436)
T COG3486 391 I--GA----PDLSLGAWRAAVILNSLLGR 413 (436)
T ss_pred c--CC----ccchHHHHHHHHHHHHHhCc
Confidence 2 22 22222333444455666654
No 84
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.82 E-value=1.1e-19 Score=169.71 Aligned_cols=248 Identities=16% Similarity=0.199 Sum_probs=136.5
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCcccc-ccCCC---------CCCCCCC---cceecC
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKA-YLFPE---------GTARLPG---FHVCVG 71 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~-~~~~~---------~~~~~~~---~~~~~~ 71 (434)
.+|+|+||.||++|+.|..|.+.+ ..++..+|+.+.+.|+..++..+ .+... .+..--. |....+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~--~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~ 79 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHG--DLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG 79 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH-----EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcC--CCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence 589999999999999999999886 23399999999888775443211 11111 1100000 000000
Q ss_pred C--------------CCCCCCHhHHHH-CCcEEEcCCeEEEEeCCCC------EEEcC----CCcEEEeceEEEccCCCc
Q 013890 72 S--------------GGERLLPEWYKE-KGIELILSTEIVRADIASK------TLLSA----TGLIFKYQILVIATGSTV 126 (434)
Q Consensus 72 ~--------------~~~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~------~v~~~----~~~~~~~d~lilAtG~~~ 126 (434)
. .+...+.+|+.+ ..-.+..+.+|++|.+... .|.+. ++..+.+++||+|||..|
T Consensus 80 rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P 159 (341)
T PF13434_consen 80 RLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQP 159 (341)
T ss_dssp -HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE
T ss_pred ChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCC
Confidence 0 001122334333 3434778889999987553 35542 346899999999999999
Q ss_pred ccccCCCCCCCC-CCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCC--eEEEEeeCCccCCc--
Q 013890 127 LRLTDFGVEGAD-AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI--DVSMVYPEPWCMPR-- 201 (434)
Q Consensus 127 ~~p~~~~i~g~~-~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~--~v~~~~~~~~~~~~-- 201 (434)
.+|+. +.... .+.+++..++..... . ....++|+|||+|.+|.|++..|.+.+. +|+|+.|++.+.+.
T Consensus 160 ~iP~~--~~~~~~~~~v~Hss~~~~~~~--~---~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~ 232 (341)
T PF13434_consen 160 RIPEW--FQDLPGSPRVFHSSEYLSRID--Q---SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDD 232 (341)
T ss_dssp ---GG--GGGGTT-TTEEEGGGHHHHHT----------EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB---
T ss_pred CCCcc--hhhcCCCCCEEEehHhhhccc--c---ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCcc
Confidence 99886 33333 377887665543321 1 1257899999999999999999998874 89999998765432
Q ss_pred ------ccCHH-------------------------------HHHHHHHHH------HHcCcEEEcCCeEEEEEecCCCc
Q 013890 202 ------LFTAD-------------------------------IAAFYEGYY------ANKGIKIIKGTVAVGFTTNADGE 238 (434)
Q Consensus 202 ------~~~~~-------------------------------~~~~~~~~l------~~~gV~~~~~~~v~~i~~~~~g~ 238 (434)
.|+++ +.+.+.+.+ .+..++++.+++|++++..++|.
T Consensus 233 s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~ 312 (341)
T PF13434_consen 233 SPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGG 312 (341)
T ss_dssp -CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SS
T ss_pred ccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCE
Confidence 23332 222221111 23357899999999998866543
Q ss_pred EEEEEeCC---C--cEEEcCEEEEccCCc
Q 013890 239 VNEVKLKD---G--RTLEADIVVVGVGGR 262 (434)
Q Consensus 239 ~~~v~~~~---g--~~i~~d~vv~a~G~~ 262 (434)
..+.+.+ + .++++|.||+|||++
T Consensus 313 -~~l~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 313 -VRLTLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp -EEEEEEETTT--EEEEEESEEEE---EE
T ss_pred -EEEEEEECCCCCeEEEecCEEEEcCCcc
Confidence 3455543 2 468999999999985
No 85
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.81 E-value=2.8e-21 Score=168.92 Aligned_cols=187 Identities=33% Similarity=0.461 Sum_probs=121.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCC-CCCHhHHHHC
Q 013890 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGE-RLLPEWYKEK 85 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 85 (434)
||||||||+||++||.+|++.+.+ |+++|+.+..++....+....+........ .+. ... ....+.+...
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~---v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~ 71 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAK---VLIIEKSPGTPYNSGCIPSPLLVEIAPHRH-EFL-----PARLFKLVDQLKNR 71 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSE---EEEESSSSHHHHHHSHHHHHHHHHHHHHHH-HHH-----HHHHGHHHHHHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCe---EEEEeccccccccccccccccccccccccc-ccc-----cccccccccccccc
Confidence 799999999999999999988776 999988865333222221111100000000 000 000 0112233568
Q ss_pred CcEEEcCCeEEEEeCCCCEE----------EcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHH
Q 013890 86 GIELILSTEIVRADIASKTL----------LSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLV 155 (434)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~v----------~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~ 155 (434)
++++..+..+.+++...+.+ ...++.++.||+||+|||+.|..|+ +++.+ ..+......++..+.
T Consensus 72 ~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~---i~g~~--~~~~~~~~~~~~~~~ 146 (201)
T PF07992_consen 72 GVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPN---IPGEE--VAYFLRGVDDAQRFL 146 (201)
T ss_dssp THEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEES---STTTT--TECBTTSEEHHHHHH
T ss_pred eEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccceee---cCCCc--ccccccccccccccc
Confidence 99998878999999888742 2345578999999999999998887 45541 222224455555555
Q ss_pred HHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecC
Q 013890 156 EAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA 235 (434)
Q Consensus 156 ~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~ 235 (434)
..+. .+++++|||
T Consensus 147 ~~~~--~~~~v~VvG----------------------------------------------------------------- 159 (201)
T PF07992_consen 147 ELLE--SPKRVAVVG----------------------------------------------------------------- 159 (201)
T ss_dssp THSS--TTSEEEEES-----------------------------------------------------------------
T ss_pred cccc--ccccccccc-----------------------------------------------------------------
Confidence 5443 245999999
Q ss_pred CCcEEEEEeCCCcEEEcCEEEEccCCccChhh-hhccccc-cCCcEEeCCCCCCCCCceEEeccccccc
Q 013890 236 DGEVNEVKLKDGRTLEADIVVVGVGGRPLISL-FKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFP 302 (434)
Q Consensus 236 ~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~-~~~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~ 302 (434)
...+ -..++.. .+|++.||+++||+.|+|||+|||++.+
T Consensus 160 ----------------------------~~~l~~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~ 200 (201)
T PF07992_consen 160 ----------------------------TEFLAEKLGVELDENGFIKVDENLQTSVPGIYAAGDCAGIY 200 (201)
T ss_dssp ----------------------------TTTSTHHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGBEES
T ss_pred ----------------------------ccccccccccccccccccccccccccccccccccccccccC
Confidence 2222 2345666 6789999999999999999999999865
No 86
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.79 E-value=3.9e-19 Score=155.59 Aligned_cols=177 Identities=23% Similarity=0.329 Sum_probs=102.6
Q ss_pred EEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCCCCccccccCCC---CCCCCCCcc---e------------
Q 013890 9 VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YERPALSKAYLFPE---GTARLPGFH---V------------ 68 (434)
Q Consensus 9 vIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~---~------------ 68 (434)
+|||||++||++|.+|.++|.++ |+|||+++.+. |........+..+. ....++.+. .
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~--v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDP--VVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDF 78 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-----EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSS
T ss_pred CEECcCHHHHHHHHHHHhCCCCc--EEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCccc
Confidence 79999999999999999998754 99999996532 11100000011110 001111100 0
Q ss_pred ecCCCCCCCCHhHHHHCCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCC--CcccccCCCCCC-CCCCCEE
Q 013890 69 CVGSGGERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGS--TVLRLTDFGVEG-ADAKNIF 143 (434)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~--~~~~p~~~~i~g-~~~~~v~ 143 (434)
........++..+.++.++++..+++|.++..+++ .|++.+++++.+|+||+|||. .|+.|+ +++ ... ..+
T Consensus 79 ~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~---~~g~~~~-~~~ 154 (203)
T PF13738_consen 79 PSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPD---IPGSAFR-PII 154 (203)
T ss_dssp EBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S----TTGGCS-EEE
T ss_pred CCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCccc---ccccccc-ceE
Confidence 00000112344555678899999999999987664 577778878999999999995 677776 466 333 455
Q ss_pred EEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCcc
Q 013890 144 YLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 198 (434)
Q Consensus 144 ~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~ 198 (434)
+.....+.. ..++++|+|||+|.+|++++..|.+.|.+|+++.|++..
T Consensus 155 h~~~~~~~~-------~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~~ 202 (203)
T PF13738_consen 155 HSADWRDPE-------DFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPIW 202 (203)
T ss_dssp EGGG-STTG-------GCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS---
T ss_pred ehhhcCChh-------hcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCCC
Confidence 544333322 236899999999999999999999999999999998754
No 87
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.1e-17 Score=162.02 Aligned_cols=189 Identities=17% Similarity=0.215 Sum_probs=121.6
Q ss_pred CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCCC-CccccccCCCCCCCCCCccee-cC-----
Q 013890 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YERP-ALSKAYLFPEGTARLPGFHVC-VG----- 71 (434)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~-~~----- 71 (434)
|+++++||+|||||++||++|+.|.++|.++ ++|+||+.... |... ..+-.+..+.....+|.+... ..
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~--~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~ 81 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPD--FVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPF 81 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHcCCCc--EEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCc
Confidence 4566799999999999999999999999765 99999997532 1111 111111111222233333321 00
Q ss_pred CCCCCCCHhHHHHCCcE--EEcCCeEEEEeCCCC----EEEcCCCcE--EEeceEEEccC--CCcccccCCCCCCCCCCC
Q 013890 72 SGGERLLPEWYKEKGIE--LILSTEIVRADIASK----TLLSATGLI--FKYQILVIATG--STVLRLTDFGVEGADAKN 141 (434)
Q Consensus 72 ~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~~----~v~~~~~~~--~~~d~lilAtG--~~~~~p~~~~i~g~~~~~ 141 (434)
.....+..++++++++. +..++.|..++.+.+ +|++.++.. +.+|+||+||| +.|++|.+.|++.+. ..
T Consensus 82 ~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~-g~ 160 (443)
T COG2072 82 AEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFK-GR 160 (443)
T ss_pred ccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCC-ce
Confidence 00112333455555432 333344444554443 466666654 56999999999 467888754443333 34
Q ss_pred EEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC
Q 013890 142 IFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM 199 (434)
Q Consensus 142 v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~ 199 (434)
+++..+..+...+ ++|+|+|||+|.+|++++..|.+.|.+|+++.|++...
T Consensus 161 ~~HS~~~~~~~~~-------~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~ 211 (443)
T COG2072 161 ILHSADWPNPEDL-------RGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHI 211 (443)
T ss_pred EEchhcCCCcccc-------CCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCce
Confidence 5555555555444 79999999999999999999999999999999987643
No 88
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.75 E-value=7.4e-18 Score=167.43 Aligned_cols=287 Identities=21% Similarity=0.265 Sum_probs=169.8
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
-++|.|||+|||||+||-.|.+.|+. |+|+||.+.++ +++.. .+|.++.... -.++-.+++.+
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~---v~vyer~dr~g--------gll~y----gipnmkldk~--vv~rrv~ll~~ 1847 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHT---VTVYERSDRVG--------GLLMY----GIPNMKLDKF--VVQRRVDLLEQ 1847 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcE---EEEEEecCCcC--------ceeee----cCCccchhHH--HHHHHHHHHHh
Confidence 47899999999999999999999987 99999998743 12211 1222211000 01233466778
Q ss_pred CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCC-cccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHH----
Q 013890 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIK---- 159 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~-~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~---- 159 (434)
.|++|+.++++ ++.+. -|+-.-.+|.+|+|+|+. |+-.+ ++|.+..+++..-.+.+.. -+..+.
T Consensus 1848 egi~f~tn~ei------gk~vs-~d~l~~~~daiv~a~gst~prdlp---v~grd~kgv~fame~l~~n-tk~lld~~~d 1916 (2142)
T KOG0399|consen 1848 EGIRFVTNTEI------GKHVS-LDELKKENDAIVLATGSTTPRDLP---VPGRDLKGVHFAMEFLEKN-TKSLLDSVLD 1916 (2142)
T ss_pred hCceEEeeccc------ccccc-HHHHhhccCeEEEEeCCCCCcCCC---CCCccccccHHHHHHHHHh-HHhhhccccc
Confidence 89999988664 23332 244445789999999985 66666 6888888877533222221 111111
Q ss_pred ----hcCCCcEEEECCCHHHHHHHHHHHHCCCeEE-EEeeCCc---------cCCc---ccCHHHHHHHHHHHHHcCcEE
Q 013890 160 ----AKKNGKAVVVGGGYIGLELSAALKINNIDVS-MVYPEPW---------CMPR---LFTADIAAFYEGYYANKGIKI 222 (434)
Q Consensus 160 ----~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~-~~~~~~~---------~~~~---~~~~~~~~~~~~~l~~~gV~~ 222 (434)
..++|+++|||||.+|-++...-.++|++-. -++--+. +.|. .|.-+.... +.-+..|-..
T Consensus 1917 ~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~--e~~~~~g~dp 1994 (2142)
T KOG0399|consen 1917 GNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHA--EAKEHYGSDP 1994 (2142)
T ss_pred cceeccCCCeEEEECCCCccccccccchhhccceecceeecCCCCcccCCCCCCccCceEEEeecchH--HHHHHhCCCc
Confidence 1268999999999999999888888886522 2221111 1111 111111110 0111122222
Q ss_pred EcCCe-EEEEEecCCCcEEEEE------------------eCC-CcEEEcCEEEEccCCccChhhhh--ccccc-cCCcE
Q 013890 223 IKGTV-AVGFTTNADGEVNEVK------------------LKD-GRTLEADIVVVGVGGRPLISLFK--GQVAE-NKGGI 279 (434)
Q Consensus 223 ~~~~~-v~~i~~~~~g~~~~v~------------------~~~-g~~i~~d~vv~a~G~~p~~~~~~--~~~~~-~~g~i 279 (434)
+.-+- -+++..+++|.++++. ..+ .+.++||+|++|.|+........ .++.. .++.|
T Consensus 1995 r~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni 2074 (2142)
T KOG0399|consen 1995 RTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNI 2074 (2142)
T ss_pred ceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCccccc
Confidence 11111 1233333344333322 222 24689999999999876554332 23444 33444
Q ss_pred Ee-CCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhc
Q 013890 280 ET-DDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 331 (434)
Q Consensus 280 ~v-d~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 331 (434)
.. ++.+.|+++.+||+|||-.... ++..|+.+|+.+|+.+-.
T Consensus 2075 ~t~~~~y~t~v~~vfaagdcrrgqs----------lvvwai~egrq~a~~vd~ 2117 (2142)
T KOG0399|consen 2075 LTPKDSYSTDVAKVFAAGDCRRGQS----------LVVWAIQEGRQAARQVDE 2117 (2142)
T ss_pred cCCCccccccccceeecccccCCce----------EEEEEehhhhHHHHHHHH
Confidence 43 4568889999999999997653 334467899999988754
No 89
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.74 E-value=7.9e-16 Score=146.93 Aligned_cols=174 Identities=20% Similarity=0.169 Sum_probs=121.9
Q ss_pred HHHHHHHHHhcCCCcEEEECCCHHHHHHH-HHHH----HCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcC
Q 013890 151 ADKLVEAIKAKKNGKAVVVGGGYIGLELS-AALK----INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKG 225 (434)
Q Consensus 151 ~~~l~~~l~~~~~~~vvVvG~g~~g~e~a-~~l~----~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~ 225 (434)
...+.+.++......=.|++.+.+|+|.+ ..+. ++|.+|+++...+..++. .++.+.+.+.+++.|++++.+
T Consensus 203 ~~~l~~~l~~~~~~~~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG---~rL~~aL~~~l~~~Gv~I~~g 279 (422)
T PRK05329 203 REALADALKPLAGDAEAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPG---LRLQNALRRAFERLGGRIMPG 279 (422)
T ss_pred HHHHHHHHHHhcCCCCEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCch---HHHHHHHHHHHHhCCCEEEeC
Confidence 34444555443334447889999999998 6665 479999999888887763 478899999999999999999
Q ss_pred CeEEEEEecCCCcEEEEEeCCCc--EEEcCEEEEccCCccChhhh-----------hcc------------------ccc
Q 013890 226 TVAVGFTTNADGEVNEVKLKDGR--TLEADIVVVGVGGRPLISLF-----------KGQ------------------VAE 274 (434)
Q Consensus 226 ~~v~~i~~~~~g~~~~v~~~~g~--~i~~d~vv~a~G~~p~~~~~-----------~~~------------------~~~ 274 (434)
+.|.+++.. ++.+..+...+|+ .+++|.||+|+|+.+...+. ... -+.
T Consensus 280 ~~V~~v~~~-~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~ 358 (422)
T PRK05329 280 DEVLGAEFE-GGRVTAVWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPF 358 (422)
T ss_pred CEEEEEEEe-CCEEEEEEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCch
Confidence 999999863 4555555555553 58999999999976554331 000 011
Q ss_pred cCCcEEeCCCCCC-------CCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhcc
Q 013890 275 NKGGIETDDFFKT-------SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 275 ~~g~i~vd~~~~t-------~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 332 (434)
..-+|.+|+.+|. ..+|+||+|++.+.++..... .-...|...|-.|+++|...
T Consensus 359 ~~~GV~~d~~~~p~~~~g~~~~~nl~a~G~vl~g~d~~~~~----~g~Gva~~ta~~a~~~~~~~ 419 (422)
T PRK05329 359 LQFGVATDATLRPLDSQGGPVIENLYAAGAVLGGYDPIREG----CGSGVALATALHAAEQIAEE 419 (422)
T ss_pred hhcCceECCCcCcccCCCCeeccceEEeeehhcCCchHHhC----CCchhHHHHHHHHHHHHHHh
Confidence 2235667766664 589999999999988753211 11235677788888888754
No 90
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.72 E-value=9.3e-17 Score=153.18 Aligned_cols=241 Identities=18% Similarity=0.209 Sum_probs=146.8
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCCC--------Ccccccc--CCCCCCCCCCcceec
Q 013890 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YERP--------ALSKAYL--FPEGTARLPGFHVCV 70 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~--~~~~--------~~~~~~~--~~~~~~~~~~~~~~~ 70 (434)
+...+|+|||||+|||++|+.|.+.|++ ++++||.+..+ |..+ .+-+.+. .+.....++.++...
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~---v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~ 80 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHE---VVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPE 80 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCC---ceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcc
Confidence 4468999999999999999999999998 99999998743 1111 0001111 111112223322211
Q ss_pred CCC--------CCCCCHhHHHHCCc--EEEcCCeEEEEeCCC--C-EEEcCCC----cEEEeceEEEccCCC--cccccC
Q 013890 71 GSG--------GERLLPEWYKEKGI--ELILSTEIVRADIAS--K-TLLSATG----LIFKYQILVIATGST--VLRLTD 131 (434)
Q Consensus 71 ~~~--------~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~--~-~v~~~~~----~~~~~d~lilAtG~~--~~~p~~ 131 (434)
... ..+++.++.++.++ .+.+++++..++... + .|...++ ....+|.|++|||-. |+.|..
T Consensus 81 ~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~ 160 (448)
T KOG1399|consen 81 RDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQI 160 (448)
T ss_pred cCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcC
Confidence 100 01223344444553 577778888887765 2 3554433 467899999999976 777765
Q ss_pred CC--CCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHH
Q 013890 132 FG--VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAA 209 (434)
Q Consensus 132 ~~--i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~ 209 (434)
++ ++ .-...+++.+++.....+ .+|+|+|||.|++|+|++..+++...+|++..+ ...... ..+
T Consensus 161 ~g~~~~-~f~G~~iHS~~Yk~~e~f-------~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~~~~~~-~~~---- 226 (448)
T KOG1399|consen 161 PGPGIE-SFKGKIIHSHDYKSPEKF-------RDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-SPKVHV-EPP---- 226 (448)
T ss_pred CCCchh-hcCCcceehhhccCcccc-------cCceEEEECCCccHHHHHHHHHHhccCcceeee-cccccc-ccc----
Confidence 33 11 223456666666544443 689999999999999999999999888888765 100000 000
Q ss_pred HHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhhhcc
Q 013890 210 FYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQ 271 (434)
Q Consensus 210 ~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~~~ 271 (434)
..+ ..++..+ ..+..+.. ++ .+.+.++....+|.+|+|||+.-...+++.+
T Consensus 227 ---~~~-~~~~~~~--~~i~~~~e--~~---~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~ 277 (448)
T KOG1399|consen 227 ---EIL-GENLWQV--PSIKSFTE--DG---SVFEKGGPVERVDRIIFCTGYKYKFPFLETL 277 (448)
T ss_pred ---cee-ecceEEc--cccccccC--cc---eEEEcCceeEEeeeEEEeeeeEeecceeccC
Confidence 000 1112222 12444433 33 3455677788999999999998877766543
No 91
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.66 E-value=3.9e-15 Score=141.87 Aligned_cols=274 Identities=15% Similarity=0.161 Sum_probs=149.8
Q ss_pred cCcEEEECCCHHHHHHHHHHH-HcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFA-KQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~-~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
.++|+||||||||++||.+|. +.|++ |+|+|+.+.+. +++...-+...+.... ....+...+.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~---VtlfEk~p~pg--------GLvR~GVaPdh~~~k~-----v~~~f~~~~~ 102 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVK---VDIFEKLPNPY--------GLIRYGVAPDHIHVKN-----TYKTFDPVFL 102 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCe---EEEEecCCCCc--------cEEEEeCCCCCccHHH-----HHHHHHHHHh
Confidence 468999999999999999765 55665 99999997632 1221111111111100 0011222344
Q ss_pred HCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCC------CC-CCC----CCCEEEEeCH----
Q 013890 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFG------VE-GAD----AKNIFYLREI---- 148 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~------i~-g~~----~~~v~~~~~~---- 148 (434)
..+++++-+..+ +..+..++- .-.||.||+|||+.+..+++++ +. |.+ ..++|...++
T Consensus 103 ~~~v~f~gnv~V------G~Dvt~eeL-~~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WY 175 (506)
T PTZ00188 103 SPNYRFFGNVHV------GVDLKMEEL-RNHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIFHARDLIYFY 175 (506)
T ss_pred hCCeEEEeeeEe------cCccCHHHH-HhcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEEehheEEEee
Confidence 466777643222 112222221 2379999999999875444111 00 222 3355543332
Q ss_pred -HHH-----HHHHHHHHhc-CCCcEEEECCCHHHHHHHHHHH--------------------HCC-CeEEEEeeCCccCC
Q 013890 149 -DDA-----DKLVEAIKAK-KNGKAVVVGGGYIGLELSAALK--------------------INN-IDVSMVYPEPWCMP 200 (434)
Q Consensus 149 -~~~-----~~l~~~l~~~-~~~~vvVvG~g~~g~e~a~~l~--------------------~~g-~~v~~~~~~~~~~~ 200 (434)
.+. ......+..+ ..++++|||.|++++++|..|. +.+ .+|+++.|....-.
T Consensus 176 Ng~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp~qa 255 (506)
T PTZ00188 176 NNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQS 255 (506)
T ss_pred cCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecCHHHh
Confidence 111 0111112111 3578999999999999999753 223 25787776633211
Q ss_pred cc-----------------cC-HH-----------------------HHHHHHHHHH----------HcCcEEEcCCeEE
Q 013890 201 RL-----------------FT-AD-----------------------IAAFYEGYYA----------NKGIKIIKGTVAV 229 (434)
Q Consensus 201 ~~-----------------~~-~~-----------------------~~~~~~~~l~----------~~gV~~~~~~~v~ 229 (434)
.+ ++ .+ ..+.+.+... .+.+.+++...+.
T Consensus 256 aFT~kElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l~F~~sP~ 335 (506)
T PTZ00188 256 SFTNAELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFYFEIR 335 (506)
T ss_pred CCCHHHHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEEEEEccCCce
Confidence 10 00 00 1112222221 1346778888888
Q ss_pred EEEecCCCcEEEEEeC-----------CC--cEEEcCEEEEccCCccChhhhhccccccCCcEEeCCCCCC--CCCceEE
Q 013890 230 GFTTNADGEVNEVKLK-----------DG--RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKT--SADDVYA 294 (434)
Q Consensus 230 ~i~~~~~g~~~~v~~~-----------~g--~~i~~d~vv~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t--~~~~iya 294 (434)
+|.. .++++.++++. .| ++++||+|+-|+|++...- .+++.+ ..+... ..+. ..|++|+
T Consensus 336 ei~~-~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p~---~g~pFd-~~~~n~-~grv~~~~~g~Y~ 409 (506)
T PTZ00188 336 QIRP-IDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSNF---AENLYN-QSVQMF-KEDIGQHKFAIFK 409 (506)
T ss_pred EEEC-CCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCCC---CCCCcc-ccCCCC-CCcccCCCCCcEE
Confidence 8875 34677777765 23 3689999999999876531 122332 111111 1222 3799999
Q ss_pred ecccccccccccC
Q 013890 295 VGDVATFPMKLYR 307 (434)
Q Consensus 295 ~Gd~~~~~~~~~~ 307 (434)
+|.+...|...++
T Consensus 410 ~GWiKrGP~GvIg 422 (506)
T PTZ00188 410 AGWFDKGPKGNIA 422 (506)
T ss_pred eeecCcCCCceec
Confidence 9999988775444
No 92
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.64 E-value=2.3e-14 Score=132.35 Aligned_cols=197 Identities=18% Similarity=0.295 Sum_probs=114.1
Q ss_pred EEEeceEEEccCCCcccccCCCCCCC-CCCCEEEEeCHHHHHHHHH--------HHH---hcCCCcEEEE---CCCH---
Q 013890 112 IFKYQILVIATGSTVLRLTDFGVEGA-DAKNIFYLREIDDADKLVE--------AIK---AKKNGKAVVV---GGGY--- 173 (434)
Q Consensus 112 ~~~~d~lilAtG~~~~~p~~~~i~g~-~~~~v~~~~~~~~~~~l~~--------~l~---~~~~~~vvVv---G~g~--- 173 (434)
++..-.+|+|||-.++-+....--|. ..++|++.- ++.++.. .++ ..++||+++| |+..
T Consensus 298 e~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~l---ElErml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~ 374 (622)
T COG1148 298 ELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITNL---ELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQV 374 (622)
T ss_pred EEEeceEEEEccccccCcchhhhcCCCCCcchhhHH---HHHHHhccCCCCCceEEecCCCCCCceEEEEEEecCcCccc
Confidence 56788999999988765543111111 124444322 2222221 011 1267888876 6543
Q ss_pred -----H------HHHHHHHHHHC--CCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEE
Q 013890 174 -----I------GLELSAALKIN--NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVN 240 (434)
Q Consensus 174 -----~------g~e~a~~l~~~--g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~ 240 (434)
+ ++.-|....++ ..+|++..-.-+. +....-+..++.-++.||+++.+ ++.+|...+++. .
T Consensus 375 ~n~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiRa----fG~~yEefY~~~Q~~~gV~fIRG-rvaei~e~p~~~-l 448 (622)
T COG1148 375 GNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRA----FGKDYEEFYVRSQEDYGVRFIRG-RVAEIAEFPKKK-L 448 (622)
T ss_pred CChhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEeec----cCccHHHHHHhhhhhhchhhhcC-ChHHheeCCCCe-e
Confidence 1 12222333332 3456666544333 33444555666666889999988 456666555665 2
Q ss_pred EEEeCC---C--cEEEcCEEEEccCCccChhh---h-hccccc-cCCcEEeC-CCC---CCCCCceEEeccccccccccc
Q 013890 241 EVKLKD---G--RTLEADIVVVGVGGRPLISL---F-KGQVAE-NKGGIETD-DFF---KTSADDVYAVGDVATFPMKLY 306 (434)
Q Consensus 241 ~v~~~~---g--~~i~~d~vv~a~G~~p~~~~---~-~~~~~~-~~g~i~vd-~~~---~t~~~~iya~Gd~~~~~~~~~ 306 (434)
.|..+| | .++++|+||+++|..|.... . ..++.. +.|++... +.+ +|+.++||.+|-+.+..
T Consensus 449 ~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqgPk---- 524 (622)
T COG1148 449 IVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQGPK---- 524 (622)
T ss_pred EEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccCCc----
Confidence 344433 2 47899999999999985542 2 235555 56777766 445 45889999999777643
Q ss_pred CcccccccHHHHHHHHHHHHHH
Q 013890 307 REMRRVEHVDHARKSAEQAVKT 328 (434)
Q Consensus 307 ~~~~~~~~~~~A~~~g~~aa~~ 328 (434)
.+..++.||..||..
T Consensus 525 -------dI~~siaqa~aAA~k 539 (622)
T COG1148 525 -------DIADSIAQAKAAAAK 539 (622)
T ss_pred -------cHHHHHHHhHHHHHH
Confidence 455566666665543
No 93
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.62 E-value=6.9e-15 Score=131.83 Aligned_cols=293 Identities=17% Similarity=0.197 Sum_probs=163.4
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
...|.|||+||||+.+|..|.++ .+...|.|+|+.+. ||. +....-.+..|..+. -...+.+.+++
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~-~~~~~Vdi~Ek~Pv-PFG-------LvRyGVAPDHpEvKn-----vintFt~~aE~ 85 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKR-HPNAHVDIFEKLPV-PFG-------LVRYGVAPDHPEVKN-----VINTFTKTAEH 85 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhc-CCCCeeEeeecCCc-ccc-------eeeeccCCCCcchhh-----HHHHHHHHhhc
Confidence 46899999999999999999986 34567999999975 221 111111222222111 01234455555
Q ss_pred CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCC-cccccCCCCCCCCCCCEEEEeCHHHHHH----HHHHHH
Q 013890 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADK----LVEAIK 159 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~-~~~p~~~~i~g~~~~~v~~~~~~~~~~~----l~~~l~ 159 (434)
....++-+..+ +..+.+ ..-+-.||.+|||.|+. ++... |||.+..+|++.+.+-.... ..+.-.
T Consensus 86 ~rfsf~gNv~v------G~dvsl-~eL~~~ydavvLaYGa~~dR~L~---IPGe~l~~V~Sarefv~Wyng~P~~~~le~ 155 (468)
T KOG1800|consen 86 ERFSFFGNVKV------GRDVSL-KELTDNYDAVVLAYGADGDRRLD---IPGEELSGVISAREFVGWYNGLPENQNLEP 155 (468)
T ss_pred cceEEEeccee------cccccH-HHHhhcccEEEEEecCCCCcccC---CCCcccccceehhhhhhhccCCCcccccCc
Confidence 55666655433 111221 11235799999999986 45555 78888888987654332211 000111
Q ss_pred hcCCCcEEEECCCHHHHHHHHHHHHC----------------------CCeEEEEeeCCccCCcc---------------
Q 013890 160 AKKNGKAVVVGGGYIGLELSAALKIN----------------------NIDVSMVYPEPWCMPRL--------------- 202 (434)
Q Consensus 160 ~~~~~~vvVvG~g~~g~e~a~~l~~~----------------------g~~v~~~~~~~~~~~~~--------------- 202 (434)
.+...+++|||.|++++++|..|... =.+|+++.|...+...+
T Consensus 156 dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~~~l~~~~ 235 (468)
T KOG1800|consen 156 DLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREVLELPGAR 235 (468)
T ss_pred ccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHHHHHhCCCCcc
Confidence 22478999999999999999887532 13577777663321110
Q ss_pred ------------c----------CHHHHHHHHHHHHHc---------CcE---EEcCCeEEEEEecCCCcEEEE------
Q 013890 203 ------------F----------TADIAAFYEGYYANK---------GIK---IIKGTVAVGFTTNADGEVNEV------ 242 (434)
Q Consensus 203 ------------~----------~~~~~~~~~~~l~~~---------gV~---~~~~~~v~~i~~~~~g~~~~v------ 242 (434)
+ .+++.+.+.+.++++ +.+ +.+-....+|..++++ +.++
T Consensus 236 ~r~~~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~~~~~~-v~~~~~~~t~ 314 (468)
T KOG1800|consen 236 PRLDPVDFSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAILPGADG-VSGVRFQVTI 314 (468)
T ss_pred cccCchhccceeCCcccccccCchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhccCccc-ccceEEEeee
Confidence 0 012333333333331 111 1111222333332222 1111
Q ss_pred -------EeCCCcEEEcCEEEEccCCccChhhhhccccc-cCCcEEeCCCCCC----CCCceEEecccccccccccCccc
Q 013890 243 -------KLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKT----SADDVYAVGDVATFPMKLYREMR 310 (434)
Q Consensus 243 -------~~~~g~~i~~d~vv~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t----~~~~iya~Gd~~~~~~~~~~~~~ 310 (434)
.+.+-++++|++++.++|++... ...++.. ...++.-|...+. -.|++|++|-|...|.
T Consensus 315 l~~~~~~~tg~~e~~p~~l~i~sIGYks~p--v~~gipFd~~kgvv~n~~GrV~~s~~~pglY~sGW~k~GP~------- 385 (468)
T KOG1800|consen 315 LEGTQAVPTGAFETLPCGLLIRSIGYKSVP--VDSGIPFDDKKGVVPNVNGRVLVSGCSPGLYASGWVKHGPT------- 385 (468)
T ss_pred ehhhcccccCceEeeccceeEeeeeecccc--cCCCCCcccccCcccCCCceEEeeccCCceEEEeeeccCCc-------
Confidence 11222479999999999976533 2224444 2233333433333 2599999999998776
Q ss_pred ccccHHHHHHHHHHHHHHHhccC
Q 013890 311 RVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 311 ~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
..+...+.++..+++.|....
T Consensus 386 --GvIattm~dAf~v~d~I~qD~ 406 (468)
T KOG1800|consen 386 --GVIATTMQDAFEVADTIVQDL 406 (468)
T ss_pred --ceeeehhhhHHHHHHHHHHHH
Confidence 345556677777777776543
No 94
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.53 E-value=1.4e-13 Score=100.56 Aligned_cols=80 Identities=34% Similarity=0.618 Sum_probs=74.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe
Q 013890 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL 244 (434)
Q Consensus 165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~ 244 (434)
|++|||+|++|+|+|..|.+.|.+|+++++.+.+++ .+++++.+.+.+.+++.||++++++.+++++.++++ +. |++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~ 77 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLP-GFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTL 77 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSST-TSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhh-hcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEE
Confidence 689999999999999999999999999999999995 489999999999999999999999999999986667 65 888
Q ss_pred CCC
Q 013890 245 KDG 247 (434)
Q Consensus 245 ~~g 247 (434)
+||
T Consensus 78 ~~g 80 (80)
T PF00070_consen 78 EDG 80 (80)
T ss_dssp ETS
T ss_pred ecC
Confidence 886
No 95
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.45 E-value=1.9e-12 Score=118.41 Aligned_cols=84 Identities=11% Similarity=0.048 Sum_probs=63.9
Q ss_pred HHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 013890 178 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVV 257 (434)
Q Consensus 178 ~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~ 257 (434)
+...+.++|.+.+.-+.+..|....-..++.+.+.+.+++.||++++++.|.+|+.++ ....+.+.+|+++.||.+|+
T Consensus 84 ~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f~l~t~~g~~i~~d~lil 161 (408)
T COG2081 84 FIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGFRLDTSSGETVKCDSLIL 161 (408)
T ss_pred HHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceEEEEcCCCCEEEccEEEE
Confidence 3345566777655544443333323456889999999999999999999999999833 44788999998999999999
Q ss_pred ccC--Ccc
Q 013890 258 GVG--GRP 263 (434)
Q Consensus 258 a~G--~~p 263 (434)
|+| ..|
T Consensus 162 AtGG~S~P 169 (408)
T COG2081 162 ATGGKSWP 169 (408)
T ss_pred ecCCcCCC
Confidence 999 555
No 96
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.37 E-value=5.4e-12 Score=118.06 Aligned_cols=223 Identities=17% Similarity=0.149 Sum_probs=112.6
Q ss_pred CCcEEEcCCeEEEEeCCCC-E---EEcC-C-C--cEEEeceEEEccCCCcccccCC-CCCCCCCCCE-------EEEeCH
Q 013890 85 KGIELILSTEIVRADIASK-T---LLSA-T-G--LIFKYQILVIATGSTVLRLTDF-GVEGADAKNI-------FYLREI 148 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~-~---v~~~-~-~--~~~~~d~lilAtG~~~~~p~~~-~i~g~~~~~v-------~~~~~~ 148 (434)
.+|+++.+..+.++-.+++ . +.+. . + ..+.++.+|||||.--.....- +..+....++ ..+.++
T Consensus 147 p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~~TTNp~~~~GdGIamA~rAGa~v~Dl 226 (518)
T COG0029 147 PNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVADL 226 (518)
T ss_pred CCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCCcccccccCCCccccccHHHHHHHcCCeecCc
Confidence 6899999988877776666 2 2232 2 2 4678899999999754322210 0001000000 000111
Q ss_pred HHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEE-eeCCccCCcc------cCHH-HHHHHHHHHHHcCc
Q 013890 149 DDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV-YPEPWCMPRL------FTAD-IAAFYEGYYANKGI 220 (434)
Q Consensus 149 ~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~-~~~~~~~~~~------~~~~-~~~~~~~~l~~~gV 220 (434)
+=.|. .| ..+..+ +--..-+.+++.-.|.. ++ ..+.+|++.+ .+.+ +++.+...+++.|-
T Consensus 227 EFvQF--------HP-T~l~~~-~~~~~LiSEAVRGEGA~--L~~~~GeRFm~~~~p~~ELAPRDVVARAI~~e~~~~g~ 294 (518)
T COG0029 227 EFVQF--------HP-TALYIP-QRRAFLISEAVRGEGAI--LVNEDGERFMPDYHPRGELAPRDVVARAIDAEMKRGGA 294 (518)
T ss_pred cceee--------cc-ceecCC-CCccceeehhhhcCccE--EECCCCCccccCCCCccccchHHHHHHHHHHHHHhcCC
Confidence 10000 01 111111 11111122333333432 33 2344565431 2233 55677777887777
Q ss_pred EEEcCCeEEEEEecCCCcEEEEEeCCCcEEEc-CEEEEccCCccChhhhhccccc--cCCcEEeCCCCCCCCCceEEecc
Q 013890 221 KIIKGTVAVGFTTNADGEVNEVKLKDGRTLEA-DIVVVGVGGRPLISLFKGQVAE--NKGGIETDDFFKTSADDVYAVGD 297 (434)
Q Consensus 221 ~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~-d~vv~a~G~~p~~~~~~~~~~~--~~g~i~vd~~~~t~~~~iya~Gd 297 (434)
.++++.+ .+.. . .+ + +.++. ...+...|..|..+.+...... ..|+|.||.+.||++|++||+|.
T Consensus 295 ~V~LD~s--~~~~---~---~~--~--~rFP~I~~~c~~~GiD~~r~~IPV~PaaHY~mGGI~vD~~GrTsi~gLYAiGE 362 (518)
T COG0029 295 DVFLDIS--HIPG---D---FF--E--RRFPTIYAACLKAGIDPTREPIPVVPAAHYTMGGIAVDANGRTSIPGLYAIGE 362 (518)
T ss_pred eEEEecc--CCCc---h---hh--h--hhCcHHHHHHHHcCCCcccCccCccchhheecccEEECCCCcccCcccEEeee
Confidence 6665532 1111 0 00 0 12222 2233445665555444322222 56999999999999999999999
Q ss_pred cccccccccCcc-cccccHHHHHHHHHHHHHHHhccC
Q 013890 298 VATFPMKLYREM-RRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 298 ~~~~~~~~~~~~-~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
|+.... .|.. ....+.-.+.--|..+|++|.+..
T Consensus 363 vA~TGl--HGANRLASNSLLE~vV~g~~aA~~i~~~~ 397 (518)
T COG0029 363 VACTGL--HGANRLASNSLLECLVFGKRAAEDIAGRL 397 (518)
T ss_pred eccccc--ccchhhhhhhHHHHHHHHHHHHHHhhccc
Confidence 997432 2221 122455556677888888988764
No 97
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.36 E-value=4.9e-10 Score=105.35 Aligned_cols=183 Identities=17% Similarity=0.252 Sum_probs=100.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC----CCCCCCc-------cccccC--CCCCCCCCCccee---
Q 013890 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA----PYERPAL-------SKAYLF--PEGTARLPGFHVC--- 69 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~----~~~~~~~-------~~~~~~--~~~~~~~~~~~~~--- 69 (434)
++|+|||+|++|+++|.+|.+.--....|.|+|+.... +|..... ...+.. +..++.+..|...
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 68999999999999999999864333349999999873 3332111 111100 1101000001000
Q ss_pred -------cCCCCCC-------------CCHhHHHHCC---cEEEcCCeEEEEeCCC----CEEEcCCCcEEEeceEEEcc
Q 013890 70 -------VGSGGER-------------LLPEWYKEKG---IELILSTEIVRADIAS----KTLLSATGLIFKYQILVIAT 122 (434)
Q Consensus 70 -------~~~~~~~-------------~~~~~~~~~~---v~~~~~~~v~~i~~~~----~~v~~~~~~~~~~d~lilAt 122 (434)
.+..... .+..++++.. +.++.. +++++.... ..+...+|....+|-+|+||
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~-~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat 160 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIRE-EATSVRQDTNAGGYLVTTADGPSEIADIIVLAT 160 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEee-eeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence 0000000 1111112222 555554 555555442 24566788888999999999
Q ss_pred CCCcccccC--CCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCC--eEEEEeeCC
Q 013890 123 GSTVLRLTD--FGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI--DVSMVYPEP 196 (434)
Q Consensus 123 G~~~~~p~~--~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~--~v~~~~~~~ 196 (434)
|..+..++. ..+++. +..+ .+...+..+.. +. ...+++|+|+|.+.++....|.+.|. ++|.+.|..
T Consensus 161 gh~~~~~~~~~~~~~~~--~~~i--a~~~~~~~ld~-v~--~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG 231 (474)
T COG4529 161 GHSAPPADPAARDLKGS--PRLI--ADPYPANALDG-VD--ADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG 231 (474)
T ss_pred cCCCCCcchhhhccCCC--ccee--ccccCCccccc-cc--CCCceEEecCCchhHHHHHHHhccCCccceEEEeccc
Confidence 976544432 111221 1111 12111111111 11 35579999999999999999999875 588888764
No 98
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.24 E-value=2.6e-09 Score=101.15 Aligned_cols=139 Identities=17% Similarity=0.182 Sum_probs=96.6
Q ss_pred HCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEEcCEEEEccCC
Q 013890 184 INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG--RTLEADIVVVGVGG 261 (434)
Q Consensus 184 ~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g--~~i~~d~vv~a~G~ 261 (434)
..|..|..+- ...|+..+..+.+.+.+.+++.|++++.+.+|.++.. .++++..+.+.++ ..+.+|.+|+|+|.
T Consensus 245 ~~g~~v~E~p---tlPPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~-~~~~v~~V~t~~g~~~~l~AD~vVLAaGa 320 (419)
T TIGR03378 245 ATGLTLCELP---TMPPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEF-EGNRVTRIHTRNHRDIPLRADHFVLASGS 320 (419)
T ss_pred HHCCCEEeCC---CCCCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEe-eCCeEEEEEecCCccceEECCEEEEccCC
Confidence 4577776663 3334445788999999999999999999999999986 3566667776665 47999999999997
Q ss_pred ccChhhh-----------hccc------------------cccCCcEEeCCCCCC-----CCCceEEecccccccccccC
Q 013890 262 RPLISLF-----------KGQV------------------AENKGGIETDDFFKT-----SADDVYAVGDVATFPMKLYR 307 (434)
Q Consensus 262 ~p~~~~~-----------~~~~------------------~~~~g~i~vd~~~~t-----~~~~iya~Gd~~~~~~~~~~ 307 (434)
--...++ ...+ +...-+|.+|+++|. ..+|+|++|-+.+.++.+..
T Consensus 321 w~S~gL~a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~ 400 (419)
T TIGR03378 321 FFSNGLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFE 400 (419)
T ss_pred CcCHHHHhhcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChHhc
Confidence 5211111 1001 002246889999994 38999999999998775321
Q ss_pred cccccccHHHHHHHHHHHHHHHh
Q 013890 308 EMRRVEHVDHARKSAEQAVKTIM 330 (434)
Q Consensus 308 ~~~~~~~~~~A~~~g~~aa~~i~ 330 (434)
. .-...|+..|-.|+++|.
T Consensus 401 g----cG~GVai~Ta~~aa~~i~ 419 (419)
T TIGR03378 401 G----CGSGVAVSTALHAAEQII 419 (419)
T ss_pred C----CCchhHHHHHHHHHHhhC
Confidence 1 112356677777777763
No 99
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.21 E-value=9.5e-10 Score=110.06 Aligned_cols=36 Identities=25% Similarity=0.413 Sum_probs=33.0
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
..+||+|||+|.||++||.++++.|.+ |+|+||...
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~---VilleK~~~ 50 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRR---VLVVTKAAL 50 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCe---EEEEEccCC
Confidence 368999999999999999999998876 999999875
No 100
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=99.18 E-value=4.8e-10 Score=99.30 Aligned_cols=128 Identities=21% Similarity=0.239 Sum_probs=86.4
Q ss_pred CcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcE--EEcCEEEEccCCccChh-----------
Q 013890 200 PRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRT--LEADIVVVGVGGRPLIS----------- 266 (434)
Q Consensus 200 ~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~--i~~d~vv~a~G~~p~~~----------- 266 (434)
|+.+.-.+.+.+.+.+++.|...+.+-+|...+. ..+++..|.+.+... +.+|..|+|+|.--..-
T Consensus 253 PSllGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EP 331 (421)
T COG3075 253 PSLLGIRLHNQLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEP 331 (421)
T ss_pred cchhhhhHHHHHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcc
Confidence 3334557778889999999999999999999886 578888998887754 56899999999411110
Q ss_pred hhh--------------cc----ccccCCcEEeCCCCCCC-----CCceEEecccccccccccCcccccccHHHHHHHHH
Q 013890 267 LFK--------------GQ----VAENKGGIETDDFFKTS-----ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAE 323 (434)
Q Consensus 267 ~~~--------------~~----~~~~~g~i~vd~~~~t~-----~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~ 323 (434)
++. .. -+...-++.+|+++|.+ +.|+||+|.+.+..+...... -...|+..|-
T Consensus 332 If~ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~egc----GsGVaivta~ 407 (421)
T COG3075 332 IFDLDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAEGC----GSGVAIVTAL 407 (421)
T ss_pred hhhcccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHHhcC----CcchHHHHHH
Confidence 110 00 01123468888888863 689999999999877532111 1123445666
Q ss_pred HHHHHHhcc
Q 013890 324 QAVKTIMAT 332 (434)
Q Consensus 324 ~aa~~i~~~ 332 (434)
.|++.|+..
T Consensus 408 ~aa~qi~~~ 416 (421)
T COG3075 408 HAAEQIAER 416 (421)
T ss_pred HHHHHHHHH
Confidence 677777654
No 101
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.18 E-value=1.1e-09 Score=103.69 Aligned_cols=60 Identities=20% Similarity=0.287 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcE-EEcCEEEEccCCccC
Q 013890 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRT-LEADIVVVGVGGRPL 264 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~-i~~d~vv~a~G~~p~ 264 (434)
+.++...+.+.+.++|++++++++|..|+..++| +..+.+.+|++ ++|+.||.|.|....
T Consensus 152 ~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~~ak~Vin~AGl~Ad 212 (429)
T COG0579 152 PGELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETLEAKFVINAAGLYAD 212 (429)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEEEeeEEEECCchhHH
Confidence 3456778888888899999999999999986665 56677888876 999999999996543
No 102
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.18 E-value=9.5e-11 Score=115.29 Aligned_cols=54 Identities=26% Similarity=0.381 Sum_probs=39.9
Q ss_pred cCCcEEeCCCCCCCCCceEEeccccc-ccccccCccc-ccccHHHHHHHHHHHHHHHhc
Q 013890 275 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMR-RVEHVDHARKSAEQAVKTIMA 331 (434)
Q Consensus 275 ~~g~i~vd~~~~t~~~~iya~Gd~~~-~~~~~~~~~~-~~~~~~~A~~~g~~aa~~i~~ 331 (434)
..|+|.||.+.||++|++||+|+|+. .. +|..+ .-.....+...|+.|++++..
T Consensus 309 t~GGi~vd~~~~t~IpGLyAaGE~a~~G~---hG~nrl~gnsl~~~~v~G~~ag~~aa~ 364 (466)
T PRK08401 309 TIGGISVDTFYRTGIKNLYAIGEAASNGF---HGANRLASNSLLECIVSGLEVARTISR 364 (466)
T ss_pred cCCCEEECCCCcccCCCEEECccccccCC---CCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence 56999999999999999999999974 22 22211 113456677788899988865
No 103
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.17 E-value=1.8e-10 Score=114.06 Aligned_cols=56 Identities=27% Similarity=0.285 Sum_probs=41.0
Q ss_pred cCCcEEeCCCCCCCCCceEEecccccccccccCccc-ccccHHHHHHHHHHHHHHHhcc
Q 013890 275 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMR-RVEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 275 ~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~-~~~~~~~A~~~g~~aa~~i~~~ 332 (434)
..|+|.||.+.||++||+||+|+|+... .+|..+ --.+...+.-.|++|++++...
T Consensus 332 t~GGi~vd~~~~t~I~GLyAaGE~a~~g--~hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 388 (488)
T TIGR00551 332 TCGGISVDDHGRTTVPGLYAIGEVACTG--LHGANRLASNSLLECLVFGWSAAEDISRR 388 (488)
T ss_pred ecCCEEECCCCcccCCCEEECccccccc--cCcccccchhHHHHHHHHHHHHHHHHHhh
Confidence 5699999999999999999999997421 112111 1245667788899999988753
No 104
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.16 E-value=2.4e-10 Score=109.15 Aligned_cols=85 Identities=20% Similarity=0.268 Sum_probs=54.8
Q ss_pred HHHHHHHHCCCeEEEEeeCCccCCcc-cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEE
Q 013890 177 ELSAALKINNIDVSMVYPEPWCMPRL-FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIV 255 (434)
Q Consensus 177 e~a~~l~~~g~~v~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~v 255 (434)
++...+.+.|.... ..+..++.|.. -..++.+.+.+.+++.||+++++++|.+++. .++....|.++++.++.+|.|
T Consensus 81 d~~~ff~~~Gv~~~-~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~-~~~~~f~v~~~~~~~~~a~~v 158 (409)
T PF03486_consen 81 DLIAFFEELGVPTK-IEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEK-KEDGVFGVKTKNGGEYEADAV 158 (409)
T ss_dssp HHHHHHHHTT--EE-E-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEE-ETTEEEEEEETTTEEEEESEE
T ss_pred HHHHHHHhcCCeEE-EcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeee-cCCceeEeeccCcccccCCEE
Confidence 45566777887644 33455555542 2356788899999999999999999999987 345557788877789999999
Q ss_pred EEccCCcc
Q 013890 256 VVGVGGRP 263 (434)
Q Consensus 256 v~a~G~~p 263 (434)
|+|+|-..
T Consensus 159 ILAtGG~S 166 (409)
T PF03486_consen 159 ILATGGKS 166 (409)
T ss_dssp EE----SS
T ss_pred EEecCCCC
Confidence 99999543
No 105
>PLN02463 lycopene beta cyclase
Probab=99.13 E-value=4.7e-09 Score=101.89 Aligned_cols=120 Identities=15% Similarity=0.225 Sum_probs=72.2
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCC-ccccccCCCC-----CCCCCCccee---------
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA-LSKAYLFPEG-----TARLPGFHVC--------- 69 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~--------- 69 (434)
.+||+||||||||+++|..|++.|++ |+|+|+.+...+.+.. .....+.... ....+.....
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~---V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~ 104 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLS---VCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDL 104 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCe---EEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccc
Confidence 58999999999999999999999987 9999998653332211 0000000000 0000000000
Q ss_pred ---cCCCCC----CCCHhHHHHCCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCccc
Q 013890 70 ---VGSGGE----RLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLR 128 (434)
Q Consensus 70 ---~~~~~~----~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~ 128 (434)
.+.... ....+.+.+.+++++. ..|.++...+. .|.+.++.++++|.||.|+|.....
T Consensus 105 ~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~-~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l 171 (447)
T PLN02463 105 DRPYGRVNRKKLKSKMLERCIANGVQFHQ-AKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRCL 171 (447)
T ss_pred cCcceeEEHHHHHHHHHHHHhhcCCEEEe-eEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcCc
Confidence 000000 1111223456899875 48888876554 4667788899999999999987653
No 106
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.13 E-value=3.7e-10 Score=114.31 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=31.9
Q ss_pred cCcEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEeCCCC
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~--g~~~~~V~vie~~~~ 42 (434)
.+||||||+|.||++||+++++. |.+ |+||||...
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~---V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLK---VLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCe---EEEEECCCc
Confidence 48999999999999999999998 776 999999864
No 107
>PRK08275 putative oxidoreductase; Provisional
Probab=99.11 E-value=2.7e-10 Score=114.53 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=31.2
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.+||||||+|.||++||+++++.+. ..+|+|+||...
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~-g~~VilveK~~~ 45 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNP-ALRVLLLEKANV 45 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCC-CCeEEEEeCCCC
Confidence 5899999999999999999998731 223999999975
No 108
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.10 E-value=3.7e-10 Score=109.92 Aligned_cols=55 Identities=22% Similarity=0.178 Sum_probs=40.9
Q ss_pred cCCcEEeCCCCCCCCCceEEeccccc-ccccccCcc-cccccHHHHHHHHHHHHHHHhcc
Q 013890 275 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREM-RRVEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 275 ~~g~i~vd~~~~t~~~~iya~Gd~~~-~~~~~~~~~-~~~~~~~~A~~~g~~aa~~i~~~ 332 (434)
..|+|.||...||++|++||+|.|++ .. +|.. .-..+...+.-.|++|++++...
T Consensus 330 t~GGi~vd~~~~t~i~gLYAaGE~a~~g~---hG~nrl~gnsl~~~lvfGr~Ag~~a~~~ 386 (433)
T PRK06175 330 FMGGIKVDLNSKTSMKNLYAFGEVSCTGV---HGANRLASNSLLEGLVFSKRGAEKINSE 386 (433)
T ss_pred ecCCEEECCCccccCCCeEecccccccCC---CccccchhHHHHHHHHHHHHHHHHHHHh
Confidence 56999999999999999999999974 22 1211 11245667788899999988653
No 109
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.09 E-value=7e-10 Score=110.18 Aligned_cols=56 Identities=23% Similarity=0.245 Sum_probs=40.6
Q ss_pred cCCcEEeCCCCCCCCCceEEecccccccccccCccc-ccccHHHHHHHHHHHHHHHhcc
Q 013890 275 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMR-RVEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 275 ~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~-~~~~~~~A~~~g~~aa~~i~~~ 332 (434)
..|+|.||.+.||++|++||+|+|++.. ..|..+ ...+...+.-.|+.|++++...
T Consensus 331 ~~GGi~vd~~~~t~I~GLyAaGE~a~~g--~hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 387 (510)
T PRK08071 331 LMGGVKTNLDGETSIPGLYAIGEVACTG--VHGANRLASNSLLEGLVFGKRAAEHILTK 387 (510)
T ss_pred EcCCEEECCCCcccCCCeEEcccccccc--cCCCcccchHHHHHHHHHHHHHHHHHHhh
Confidence 4689999999999999999999998521 112111 1135667778899999988653
No 110
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.08 E-value=1.2e-09 Score=115.50 Aligned_cols=35 Identities=26% Similarity=0.492 Sum_probs=32.3
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.+||||||||.||++||.++++.|.+ |+|+||...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~---V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGAN---VLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCe---EEEEecccc
Confidence 58999999999999999999998887 999999864
No 111
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.07 E-value=6.7e-09 Score=103.95 Aligned_cols=56 Identities=23% Similarity=0.286 Sum_probs=41.1
Q ss_pred cCCcEEeCCCCCCCCCceEEecccccccccccCccc-ccccHHHHHHHHHHHHHHHhcc
Q 013890 275 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMR-RVEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 275 ~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~-~~~~~~~A~~~g~~aa~~i~~~ 332 (434)
..|+|.||.+.||++|++||+|+|+... ..|..+ -......|.-.|++|++++...
T Consensus 352 t~GGi~vd~~~~t~I~GLyAaGE~a~~g--~hGanrl~gnsl~~~~vfG~~Ag~~aa~~ 408 (536)
T PRK09077 352 TCGGVMVDLHGRTDLDGLYAIGEVSYTG--LHGANRMASNSLLECLVYGRSAAEDILSR 408 (536)
T ss_pred ecCCeeECCCCccccCCEEecccccccc--cCCCccchhhhHHHHHHHHHHHHHHHHHh
Confidence 5689999999999999999999997421 112111 1145667788899999988754
No 112
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.06 E-value=2.5e-10 Score=115.12 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=31.7
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
..+||||||||.||++||+++++.+. ..+|+|+||...
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~-g~~V~vleK~~~ 39 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDP-SLDVAVVAKTHP 39 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcC-CCcEEEEeccCC
Confidence 35899999999999999999998751 123999999865
No 113
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.06 E-value=2.1e-08 Score=100.93 Aligned_cols=37 Identities=35% Similarity=0.561 Sum_probs=33.3
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
+..+||||||+|.||++||.++++.|.+ |+|+||...
T Consensus 3 ~~~~DVvVVG~G~AGl~AAl~Aae~G~~---V~lveK~~~ 39 (566)
T PRK06452 3 KIEYDAVVIGGGLAGLMSAHEIASAGFK---VAVISKVFP 39 (566)
T ss_pred cccCcEEEECccHHHHHHHHHHHHCCCc---EEEEEccCC
Confidence 3568999999999999999999998887 999999854
No 114
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.04 E-value=2.3e-09 Score=108.37 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=34.8
Q ss_pred CCCCcCcEEEECCCHHHHHHHHHHHHcC---CCCCcEEEEeCCCC
Q 013890 1 MAEKSFKYVILGGGVSAGYAAREFAKQG---VKPGELAIISKEAV 42 (434)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g---~~~~~V~vie~~~~ 42 (434)
|+...+||+|||+|.||++||.++++.| .+ |+|+||...
T Consensus 1 ~~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~---V~lleK~~~ 42 (577)
T PRK06069 1 MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLS---VAVVSKTQP 42 (577)
T ss_pred CCceecCEEEECccHHHHHHHHHHHHhCCCCCc---EEEEEcccC
Confidence 6667799999999999999999999987 55 999999865
No 115
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.03 E-value=1.7e-09 Score=107.61 Aligned_cols=56 Identities=29% Similarity=0.287 Sum_probs=39.8
Q ss_pred cCCcEEeCCCCCCCCCceEEecccccccccccCccc-ccccHHHHHHHHHHHHHHHhcc
Q 013890 275 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMR-RVEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 275 ~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~-~~~~~~~A~~~g~~aa~~i~~~ 332 (434)
..|+|.||.+.||++|++||+|+|+... .+|..+ --.....+.-.|++|++++...
T Consensus 340 t~GGi~vd~~~~t~I~GLyAaGE~a~~G--~hGanrl~gnsl~~~~v~G~~ag~~aa~~ 396 (513)
T PRK07512 340 HMGGIAVDADGRSSLPGLWAAGEVASTG--LHGANRLASNSLLEAVVFAARAAEDIAGT 396 (513)
T ss_pred EcCCEEECCCCccccCCEEecccccccC--CCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999999997321 112111 1134556677888888887654
No 116
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.03 E-value=8e-10 Score=110.98 Aligned_cols=106 Identities=16% Similarity=0.081 Sum_probs=78.2
Q ss_pred CCCcEEEECCCHHHHHHHHH-------HHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEec
Q 013890 162 KNGKAVVVGGGYIGLELSAA-------LKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 234 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~-------l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~ 234 (434)
.++.++++|++.++++++.. +.+.+.+|++....+..... +...+...+.+.+++.||++++++.++++..
T Consensus 159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~- 236 (557)
T PRK07843 159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLG-MGQALAAGLRIGLQRAGVPVLLNTPLTDLYV- 236 (557)
T ss_pred ccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCccc-CcHHHHHHHHHHHHcCCCEEEeCCEEEEEEE-
Confidence 46678899999999998765 66677777765544333222 5677888888999999999999999999986
Q ss_pred CCCcEEEEEeC-CCc--EEEcC-EEEEccC-CccChhhhh
Q 013890 235 ADGEVNEVKLK-DGR--TLEAD-IVVVGVG-GRPLISLFK 269 (434)
Q Consensus 235 ~~g~~~~v~~~-~g~--~i~~d-~vv~a~G-~~p~~~~~~ 269 (434)
+++++.+|... +++ .+.++ .||+|+| +.+|.++++
T Consensus 237 ~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~ 276 (557)
T PRK07843 237 EDGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRA 276 (557)
T ss_pred eCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHH
Confidence 35777777653 443 47785 6888776 777776654
No 117
>PRK09897 hypothetical protein; Provisional
Probab=99.03 E-value=4.3e-09 Score=103.78 Aligned_cols=167 Identities=18% Similarity=0.174 Sum_probs=92.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC----CCCCCccccccCCCCCCCC----CCccee--------
Q 013890 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP----YERPALSKAYLFPEGTARL----PGFHVC-------- 69 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~----~~~~~~~~~~~~~~~~~~~----~~~~~~-------- 69 (434)
++|+|||||++|+++|..|.+.+ ...+|+|||++...+ |.....+..++........ +.|..+
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~-~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~ 80 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQ-TPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH 80 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcC-CCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence 68999999999999999999865 245699999976432 2221111111111000000 000000
Q ss_pred ----------c-CCCC--CCCC----Hh-------HHHHCC--cEEEcCCeEEEEeCCCCE--EEcCC-CcEEEeceEEE
Q 013890 70 ----------V-GSGG--ERLL----PE-------WYKEKG--IELILSTEIVRADIASKT--LLSAT-GLIFKYQILVI 120 (434)
Q Consensus 70 ----------~-~~~~--~~~~----~~-------~~~~~~--v~~~~~~~v~~i~~~~~~--v~~~~-~~~~~~d~lil 120 (434)
. .... ...+ .+ .+...| +.++..++|+++...+.. +.+.+ +..+.+|+||+
T Consensus 81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVL 160 (534)
T PRK09897 81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVI 160 (534)
T ss_pred HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEE
Confidence 0 0000 0011 11 112344 677778899999876654 44334 46789999999
Q ss_pred ccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHC
Q 013890 121 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN 185 (434)
Q Consensus 121 AtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~ 185 (434)
|||..+..+. ++. ...+. +.-... .+....+.+|+|+|.|.++++.+..|...
T Consensus 161 AtGh~~p~~~----~~~--~~yi~--~pw~~~----~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~ 213 (534)
T PRK09897 161 ATGHVWPDEE----EAT--RTYFP--SPWSGL----MEAKVDACNVGIMGTSLSGLDAAMAVAIQ 213 (534)
T ss_pred CCCCCCCCCC----hhh--ccccC--CCCcch----hhcCCCCCeEEEECCCHHHHHHHHHHHhc
Confidence 9997542111 111 11111 111111 11111468999999999999999888755
No 118
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.02 E-value=1.2e-08 Score=98.64 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~ 264 (434)
+..+.+.+.+.+++.|++++.+++|.+++.. ++. ..|.+.+| ++.+|.||+|+|....
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~-~~~-~~V~~~~g-~i~ad~vV~A~G~~s~ 205 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEH-ANG-VVVRTTQG-EYEARTLINCAGLMSD 205 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEec-CCe-EEEEECCC-EEEeCEEEECCCcchH
Confidence 4678888889999999999999999999863 333 35777776 7999999999997653
No 119
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.02 E-value=1.9e-09 Score=104.94 Aligned_cols=127 Identities=23% Similarity=0.338 Sum_probs=76.0
Q ss_pred CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC---Ccc----ccccCC---CCC-CCC---CC-
Q 013890 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP---ALS----KAYLFP---EGT-ARL---PG- 65 (434)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~---~~~----~~~~~~---~~~-~~~---~~- 65 (434)
|++++|||+||||||||++||+.|+++|++ |+|+||.+......+ .++ ..++.. ..+ ... ..
T Consensus 1 m~~~~~DViIVGaGpAG~~aA~~La~~G~~---V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~ 77 (428)
T PRK10157 1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQ---VLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKL 77 (428)
T ss_pred CCcccCcEEEECcCHHHHHHHHHHHhCCCe---EEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeE
Confidence 555679999999999999999999999997 999999875432110 000 000000 000 000 00
Q ss_pred -c---------ceecC---CC---CC--------CCCHhHHHHCCcEEEcCCeEEEEeCCCCEE--EcCCCcEEEeceEE
Q 013890 66 -F---------HVCVG---SG---GE--------RLLPEWYKEKGIELILSTEIVRADIASKTL--LSATGLIFKYQILV 119 (434)
Q Consensus 66 -~---------~~~~~---~~---~~--------~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v--~~~~~~~~~~d~li 119 (434)
+ ..... .. .. ..+.+..++.|++++.++.|+.+..++..+ ...++.++.++.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI 157 (428)
T PRK10157 78 AFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVI 157 (428)
T ss_pred EEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEE
Confidence 0 00000 00 00 011222345799999999999987555433 23466789999999
Q ss_pred EccCCCccccc
Q 013890 120 IATGSTVLRLT 130 (434)
Q Consensus 120 lAtG~~~~~p~ 130 (434)
.|+|.......
T Consensus 158 ~A~G~~s~l~~ 168 (428)
T PRK10157 158 LADGVNSILAE 168 (428)
T ss_pred EEeCCCHHHHH
Confidence 99998664443
No 120
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.02 E-value=4.1e-09 Score=106.32 Aligned_cols=72 Identities=22% Similarity=0.232 Sum_probs=46.5
Q ss_pred cCCccChhhhhcccc--ccCCcEEeCCCCCCCCCceEEecccccccccccCcccc-cccHHHHHHHHHHHHHHHhcc
Q 013890 259 VGGRPLISLFKGQVA--ENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 259 ~G~~p~~~~~~~~~~--~~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~ 332 (434)
.|..|..+.++.... ...|+|.||.+.||++|++||+|+|++.. ..|..+. ......|.-.|++|++++...
T Consensus 339 ~G~d~~~~~i~v~p~~h~t~GGi~vd~~~~t~i~GLyAaGe~~~~g--~hGanrlggnsl~~a~v~Gr~Ag~~aa~~ 413 (582)
T PRK09231 339 VGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVG--LHGANRLGSNSLAELVVFGRVAGEQAAER 413 (582)
T ss_pred cCCCCCCCeeeeeceeeeeCCCEEECCCCccccCCEEecccccccc--cCCCCCcchhHHHHHHHHHHHHHHHHHHh
Confidence 355555443332222 25799999999999999999999997521 1222111 134566777888888887654
No 121
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.01 E-value=8.3e-10 Score=111.00 Aligned_cols=56 Identities=25% Similarity=0.269 Sum_probs=40.4
Q ss_pred cCCcEEeCCCCCCCCCceEEecccccccccccCccc-ccccHHHHHHHHHHHHHHHhcc
Q 013890 275 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMR-RVEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 275 ~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~-~~~~~~~A~~~g~~aa~~i~~~ 332 (434)
..|+|.+|.+.+|++|++||+|+|++.. .+|..+ -......+.-.|++|++++...
T Consensus 356 ~~GGi~~d~~~~t~i~GLyAaGe~a~~G--~hGanrl~g~sl~~~~v~G~~ag~~aa~~ 412 (580)
T TIGR01176 356 TMGGIETDINCETRIKGLFAVGECASVG--LHGANRLGSNSLAELVVFGRRAGEAAAER 412 (580)
T ss_pred cCCCeeECcCcccccCCeEeeecccccC--cCCCccccchhHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999997421 112111 1135666778888888887643
No 122
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.01 E-value=5.3e-09 Score=106.40 Aligned_cols=35 Identities=17% Similarity=0.430 Sum_probs=31.6
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.+||+|||+|.||++||.++++.|.+ |+|+||...
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~---VilieK~~~ 69 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYN---VKVFCYQDS 69 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCc---EEEEecCCC
Confidence 57999999999999999999999887 999998643
No 123
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.01 E-value=7.6e-10 Score=111.75 Aligned_cols=102 Identities=23% Similarity=0.243 Sum_probs=76.6
Q ss_pred CCCcEEEECCCH--HHHHHHHHHHHCCCeEEEEeeCCccCCcc-------------cCHHHHHHHHHHHHHcCcEEEcCC
Q 013890 162 KNGKAVVVGGGY--IGLELSAALKINNIDVSMVYPEPWCMPRL-------------FTADIAAFYEGYYANKGIKIIKGT 226 (434)
Q Consensus 162 ~~~~vvVvG~g~--~g~e~a~~l~~~g~~v~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~gV~~~~~~ 226 (434)
.+.++.|+|+++ ++.+++..+...+.+++++.+...++... -...+...+.+.+++.||+++.++
T Consensus 156 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~~~ 235 (574)
T PRK12842 156 PLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILTGT 235 (574)
T ss_pred CcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEeCC
Confidence 467888999988 89999999999998887765554444321 124577778888899999999999
Q ss_pred eEEEEEecCCCcEEEEEeCC--Cc-EEEcC-EEEEccCCccC
Q 013890 227 VAVGFTTNADGEVNEVKLKD--GR-TLEAD-IVVVGVGGRPL 264 (434)
Q Consensus 227 ~v~~i~~~~~g~~~~v~~~~--g~-~i~~d-~vv~a~G~~p~ 264 (434)
.++++.. +++++.+|...+ ++ ++.++ .||+|+|.-++
T Consensus 236 ~v~~l~~-~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 276 (574)
T PRK12842 236 PARELLT-EGGRVVGARVIDAGGERRITARRGVVLACGGFSH 276 (574)
T ss_pred EEEEEEe-eCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccc
Confidence 9999986 367777776643 33 46775 79999996554
No 124
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.00 E-value=9.3e-10 Score=111.23 Aligned_cols=56 Identities=20% Similarity=0.138 Sum_probs=40.5
Q ss_pred cCCcEEeCCCCC----CCCCceEEecccccccccccCccc-ccccHHHHHHHHHHHHHHHhcc
Q 013890 275 NKGGIETDDFFK----TSADDVYAVGDVATFPMKLYREMR-RVEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 275 ~~g~i~vd~~~~----t~~~~iya~Gd~~~~~~~~~~~~~-~~~~~~~A~~~g~~aa~~i~~~ 332 (434)
..|+|.||...| |++||+||+|+|++.. .+|..+ .-.....|.-.|++|++++...
T Consensus 341 t~GGi~id~~~~v~~~t~I~GLyAaGe~a~~g--~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~ 401 (566)
T TIGR01812 341 SMGGIPTDYTGRVICETIVKGLFAAGECACVS--VHGANRLGGNSLLELVVFGRIAGEAAAEY 401 (566)
T ss_pred cCCCeEECcCcccccCcccCCeeecccccccC--cCcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 579999999999 9999999999998521 122111 1135667778888888887643
No 125
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.99 E-value=5.4e-10 Score=113.78 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=34.5
Q ss_pred CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
|-...+||||||||.||++||+++++.|.+ |+||||.+.
T Consensus 1 ~~~~~~DVlVIG~G~AGl~AAi~Aae~G~~---VivleK~~~ 39 (657)
T PRK08626 1 MKIIYTDALVIGAGLAGLRVAIAAAQRGLD---TIVLSLVPA 39 (657)
T ss_pred CCceeccEEEECccHHHHHHHHHHHHcCCC---EEEEeCCCC
Confidence 444579999999999999999999999987 999998765
No 126
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.98 E-value=2.1e-08 Score=96.94 Aligned_cols=116 Identities=18% Similarity=0.218 Sum_probs=68.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC-Ccccccc-----CCCCCCCCCCcc-ee-------cCC
Q 013890 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP-ALSKAYL-----FPEGTARLPGFH-VC-------VGS 72 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~-~~-------~~~ 72 (434)
||+|||||+||+++|..|++.|++ |+|||+.+..+.... ......+ .........+.. .. ...
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~---v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLR---VQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGT 77 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCe---EEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCC
Confidence 799999999999999999998887 999999865433211 0000000 000000000100 00 000
Q ss_pred --------CCCCCCHhHHHHCCcEEEcCCeEEEEeCC-CC--EEEcCCCcEEEeceEEEccCCCc
Q 013890 73 --------GGERLLPEWYKEKGIELILSTEIVRADIA-SK--TLLSATGLIFKYQILVIATGSTV 126 (434)
Q Consensus 73 --------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~-~~--~v~~~~~~~~~~d~lilAtG~~~ 126 (434)
.......+.+.+.+++++.+ .+..+..+ .. .+.+.++.+++++.||.|+|..+
T Consensus 78 ~~~~i~~~~l~~~l~~~~~~~gv~~~~~-~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 78 AYGSVDSTRLHEELLQKCPEGGVLWLER-KAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred ceeEEcHHHHHHHHHHHHHhcCcEEEcc-EEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 00011222334568888754 78877655 32 35666777899999999999876
No 127
>PRK10015 oxidoreductase; Provisional
Probab=98.97 E-value=5.1e-09 Score=101.92 Aligned_cols=125 Identities=17% Similarity=0.254 Sum_probs=74.9
Q ss_pred CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC---Ccccc---ccCCCC-----C-CCCCC--c
Q 013890 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP---ALSKA---YLFPEG-----T-ARLPG--F 66 (434)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~---~~~~~---~~~~~~-----~-~~~~~--~ 66 (434)
|++++|||+||||||||++||+.|++.|++ |+||||.+.+....+ .++.. .+.+.. . ..... +
T Consensus 1 m~~~~~DViIVGgGpAG~~aA~~LA~~G~~---VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~ 77 (429)
T PRK10015 1 MSDDKFDAIVVGAGVAGSVAALVMARAGLD---VLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKI 77 (429)
T ss_pred CCccccCEEEECcCHHHHHHHHHHHhCCCe---EEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeE
Confidence 555679999999999999999999999987 999999876432211 00000 000000 0 00000 0
Q ss_pred ---------ceecCC--------C----CCCC----CHhHHHHCCcEEEcCCeEEEEeCCCCEEE--cCCCcEEEeceEE
Q 013890 67 ---------HVCVGS--------G----GERL----LPEWYKEKGIELILSTEIVRADIASKTLL--SATGLIFKYQILV 119 (434)
Q Consensus 67 ---------~~~~~~--------~----~~~~----~~~~~~~~~v~~~~~~~v~~i~~~~~~v~--~~~~~~~~~d~li 119 (434)
...... . .... +.+..++.|++++.++.|+.+..++..+. ..++.++.++.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI 157 (429)
T PRK10015 78 SFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVI 157 (429)
T ss_pred EEEeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEE
Confidence 000000 0 0011 22233457999999999998876554432 2345679999999
Q ss_pred EccCCCccc
Q 013890 120 IATGSTVLR 128 (434)
Q Consensus 120 lAtG~~~~~ 128 (434)
+|+|.....
T Consensus 158 ~AdG~~s~v 166 (429)
T PRK10015 158 LADGVNSML 166 (429)
T ss_pred EccCcchhh
Confidence 999986544
No 128
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.97 E-value=5.3e-09 Score=105.01 Aligned_cols=55 Identities=20% Similarity=0.172 Sum_probs=40.7
Q ss_pred cCCcEEeCCCCCCCCCceEEecccccccccccCccc-ccccHHHHHHHHHHHHHHHhcc
Q 013890 275 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMR-RVEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 275 ~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~-~~~~~~~A~~~g~~aa~~i~~~ 332 (434)
..|+|.||.+.||++|++||+|++++... +..+ --.+...|...|++|+++++..
T Consensus 347 t~GGi~vd~~~~t~IpGLyAaGE~~gg~h---G~~rlgG~sl~~a~v~Gr~Ag~~aa~~ 402 (543)
T PRK06263 347 FMGGIRINEDCETNIPGLFACGEVAGGVH---GANRLGGNALADTQVFGAIAGKSAAKN 402 (543)
T ss_pred ecCCEEECCCCcccCCCeEeccccccCCC---CCCccchhhhhhhHHHHHHHHHHHHHH
Confidence 56899999999999999999999975322 2111 1134566778899999888754
No 129
>PLN02815 L-aspartate oxidase
Probab=98.97 E-value=4.3e-09 Score=105.78 Aligned_cols=55 Identities=27% Similarity=0.241 Sum_probs=40.0
Q ss_pred cCCcEEeCCCCCCCCCceEEecccccccccccCccc-ccccHHHHHHHHHHHHHHHhc
Q 013890 275 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMR-RVEHVDHARKSAEQAVKTIMA 331 (434)
Q Consensus 275 ~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~-~~~~~~~A~~~g~~aa~~i~~ 331 (434)
..|+|.||.+.||++||+||+|+|++.. .+|..+ -..+...+.-.|+.|++++..
T Consensus 376 t~GGi~vD~~~~t~IpGLyAaGE~a~~G--~hGanrl~gnsl~e~lvfGr~Ag~~aa~ 431 (594)
T PLN02815 376 MCGGVRTGLQGETNVQGLYAAGEVACTG--LHGANRLASNSLLEALVFARRAVQPSID 431 (594)
T ss_pred eCCCeeECCCCceecCCEEecccccccC--CCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999999998421 122211 114566777788888888764
No 130
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.97 E-value=2.1e-07 Score=89.14 Aligned_cols=116 Identities=18% Similarity=0.327 Sum_probs=68.9
Q ss_pred cEEEECCCHHHHHHHHHH--HHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCC-------CCCCCCcceecCCC----
Q 013890 7 KYVILGGGVSAGYAAREF--AKQGVKPGELAIISKEAVAPYERPALSKAYLFPEG-------TARLPGFHVCVGSG---- 73 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l--~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~---- 73 (434)
||||||||+||+++|..| ++.|.+ |+|||+++..++.... .-.++.... ....+.+.......
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~---Vllid~~~~~~~~~~~-tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~ 76 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLS---VLLIDPKPKPPWPNDR-TWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRIL 76 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCE---EEEEcCCccccccCCc-ccccccccccchHHHHheecCceEEEeCCCceEE
Confidence 899999999999999999 555555 9999998765433221 111111110 01111111111000
Q ss_pred ---C-----CCCCHhH----HHHCCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCcc
Q 013890 74 ---G-----ERLLPEW----YKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVL 127 (434)
Q Consensus 74 ---~-----~~~~~~~----~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~ 127 (434)
. ...+.+. +...++ .+.+..|.+|+.... .+.+.+|.+++++.||-|+|..+.
T Consensus 77 ~~~~Y~~i~~~~f~~~l~~~~~~~~~-~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 77 IDYPYCMIDRADFYEFLLERAAAGGV-IRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred cccceEEEEHHHHHHHHHHHhhhCCe-EEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 0 0111222 222344 455569999987776 567788889999999999996543
No 131
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.96 E-value=1.8e-09 Score=107.95 Aligned_cols=54 Identities=26% Similarity=0.193 Sum_probs=38.1
Q ss_pred cCCcEEeCCCCCCCCCceEEecccccccccccCcccc-cccHHHHHHHHHHHHHHHh
Q 013890 275 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR-VEHVDHARKSAEQAVKTIM 330 (434)
Q Consensus 275 ~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~ 330 (434)
..|+|.||.+.||++|++||+|+|++.. .+|..+. ..+...+.--|+.+++++.
T Consensus 346 ~~GGi~vd~~~~t~I~GLyAaGE~a~~G--~hGanRL~gnsl~e~lvfG~~a~~~~~ 400 (553)
T PRK07395 346 WMGGVVTDLNNQTSIPGLYAVGETASTG--VHGANRLASNSLLECLVFAAQLAQLEL 400 (553)
T ss_pred cCCCeeECCCCcccCCCEEECccccccC--CCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999999997421 1122111 1344556677888888774
No 132
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.96 E-value=7.4e-10 Score=105.62 Aligned_cols=60 Identities=23% Similarity=0.338 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccCh
Q 013890 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~ 265 (434)
+..+.+.+.+.+++.|++++.+++|+++.. +++.+.+|.+++|+ +.+|.||+|+|.....
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~-~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDV-DGGRVTGVRTSDGE-IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEE-ETTEEEEEEETTEE-EEECEEEE--GGGHHH
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhh-cccccccccccccc-cccceeEeccccccee
Confidence 578889999999999999999999999997 45666679999997 9999999999975443
No 133
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.94 E-value=2.4e-09 Score=107.58 Aligned_cols=33 Identities=33% Similarity=0.580 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHH----HcCCCCCcEEEEeCCCC
Q 013890 7 KYVILGGGVSAGYAAREFA----KQGVKPGELAIISKEAV 42 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~----~~g~~~~~V~vie~~~~ 42 (434)
||||||||.||++||++++ +.|.+ |+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~---VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLK---IVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCe---EEEEEccCC
Confidence 7999999999999999998 56776 999999864
No 134
>PRK06847 hypothetical protein; Provisional
Probab=98.93 E-value=5.2e-09 Score=100.63 Aligned_cols=124 Identities=22% Similarity=0.287 Sum_probs=75.7
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCC--cc---------cc----------------c
Q 013890 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA--LS---------KA----------------Y 54 (434)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~--~~---------~~----------------~ 54 (434)
|.+++||+|||||++|+++|..|++.|++ |+|+|+.+........ +. -+ +
T Consensus 1 m~~~~~V~IVGaG~aGl~~A~~L~~~g~~---v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~ 77 (375)
T PRK06847 1 MAAVKKVLIVGGGIGGLSAAIALRRAGIA---VDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDL 77 (375)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEE
Confidence 45678999999999999999999999987 9999998652111000 00 00 0
Q ss_pred cCCCCC--CCCCC-------cceecCC---CCCCCCHhHHHHCCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEE
Q 013890 55 LFPEGT--ARLPG-------FHVCVGS---GGERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVI 120 (434)
Q Consensus 55 ~~~~~~--~~~~~-------~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lil 120 (434)
+..... ..++. +...... .....+.+.+.+.+++++.++.+..+..+.. .+.+.++.++.+|.||.
T Consensus 78 ~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~ 157 (375)
T PRK06847 78 FDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVG 157 (375)
T ss_pred ECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEE
Confidence 000000 00000 0000000 0001122333456899999999999886554 35567888899999999
Q ss_pred ccCCCccc
Q 013890 121 ATGSTVLR 128 (434)
Q Consensus 121 AtG~~~~~ 128 (434)
|+|..+..
T Consensus 158 AdG~~s~~ 165 (375)
T PRK06847 158 ADGLYSKV 165 (375)
T ss_pred CcCCCcch
Confidence 99987644
No 135
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.93 E-value=4.7e-09 Score=101.37 Aligned_cols=123 Identities=19% Similarity=0.226 Sum_probs=76.3
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCC---cccccc----CCCC---CCCCCCcce------
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA---LSKAYL----FPEG---TARLPGFHV------ 68 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~---~~~~~~----~~~~---~~~~~~~~~------ 68 (434)
+|||+||||||||++||+.|++.|++ |+|+|+.....+..++ ++...+ .... ...+.+...
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~---VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~ 79 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLD---VLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEK 79 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCe---EEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCc
Confidence 59999999999999999999999977 9999999876554332 111111 0000 000000000
Q ss_pred -ecCCC-------CCCCCHh----HHHHCCcEEEcCCeEEEEeCCCCEE---EcCCCcEEEeceEEEccCCCccccc
Q 013890 69 -CVGSG-------GERLLPE----WYKEKGIELILSTEIVRADIASKTL---LSATGLIFKYQILVIATGSTVLRLT 130 (434)
Q Consensus 69 -~~~~~-------~~~~~~~----~~~~~~v~~~~~~~v~~i~~~~~~v---~~~~~~~~~~d~lilAtG~~~~~p~ 130 (434)
..... ....+.+ ..++.|++++.++.+..+..++..+ ...++.++.++.+|.|+|.......
T Consensus 80 ~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~~ 156 (396)
T COG0644 80 VAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALAR 156 (396)
T ss_pred eEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHHHH
Confidence 00000 0112233 3445799999999999888666432 2233368999999999998765443
No 136
>PRK07190 hypothetical protein; Provisional
Probab=98.91 E-value=6.2e-09 Score=102.75 Aligned_cols=127 Identities=21% Similarity=0.227 Sum_probs=77.9
Q ss_pred CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-CCCC-Cccc---------ccc----C---------
Q 013890 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-YERP-ALSK---------AYL----F--------- 56 (434)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~-~~~~-~~~~---------~~~----~--------- 56 (434)
|.++.+||+||||||+|+++|+.|+++|.+ |+|||+.+... ..+. .+.. +++ .
T Consensus 1 m~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~---V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~ 77 (487)
T PRK07190 1 MSTQVTDVVIIGAGPVGLMCAYLGQLCGLN---TVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSS 77 (487)
T ss_pred CCCccceEEEECCCHHHHHHHHHHHHcCCC---EEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEE
Confidence 656679999999999999999999999987 99999997521 1111 0000 000 0
Q ss_pred ---CCCC--------CCCCC----cceecCCC-CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCE--EEcCCCcEEEeceE
Q 013890 57 ---PEGT--------ARLPG----FHVCVGSG-GERLLPEWYKEKGIELILSTEIVRADIASKT--LLSATGLIFKYQIL 118 (434)
Q Consensus 57 ---~~~~--------~~~~~----~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~l 118 (434)
.... ...+. +....+.. ....+.+.+.+.|+++..+++++.+..++.. +.+.+++++.+++|
T Consensus 78 ~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~v 157 (487)
T PRK07190 78 VWANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYV 157 (487)
T ss_pred EecCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEE
Confidence 0000 00000 00000000 0011223345679999999999998765543 45566778999999
Q ss_pred EEccCCCccccc
Q 013890 119 VIATGSTVLRLT 130 (434)
Q Consensus 119 ilAtG~~~~~p~ 130 (434)
|.|+|.+.....
T Consensus 158 VgADG~~S~vR~ 169 (487)
T PRK07190 158 IGADGSRSFVRN 169 (487)
T ss_pred EECCCCCHHHHH
Confidence 999998765444
No 137
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.91 E-value=6.3e-09 Score=105.10 Aligned_cols=54 Identities=17% Similarity=0.058 Sum_probs=39.9
Q ss_pred cCCcEEeCCCCCCCCCceEEecccccccccccCccc-ccccHHHHHHHHHHHHHHHhc
Q 013890 275 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMR-RVEHVDHARKSAEQAVKTIMA 331 (434)
Q Consensus 275 ~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~-~~~~~~~A~~~g~~aa~~i~~ 331 (434)
..|+|.||.+.+|++|++||+|+|+... .|..+ ...+...|.-.|++|++++..
T Consensus 354 ~~GGi~vd~~~~t~I~GLyAaGE~~~g~---hGanrlggnsl~~~lv~Gr~Ag~~aa~ 408 (589)
T PRK08641 354 SMGGLWVDYDQMTNIPGLFAAGECDYSY---HGANRLGANSLLSAIYGGMVAGPNAVE 408 (589)
T ss_pred eCCCeEECCCCCeECCCEEECcccccCC---CCCCccchhhHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999999998532 22211 124556677788888887764
No 138
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.90 E-value=1.3e-07 Score=85.24 Aligned_cols=175 Identities=17% Similarity=0.131 Sum_probs=114.1
Q ss_pred HHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc---------------------------------
Q 013890 155 VEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------------------------------- 201 (434)
Q Consensus 155 ~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~--------------------------------- 201 (434)
.+.+.+.....++|||+|+.|+-+|..+++.|.+|.++++.+.+...
T Consensus 17 ~~~~~~~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~ 96 (257)
T PRK04176 17 FEKLLDYLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVED 96 (257)
T ss_pred HHHHHHhccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecC
Confidence 33444445678999999999999999999999999999977543210
Q ss_pred ----ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC-----------CCcEEEcCEEEEccCCccChh
Q 013890 202 ----LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK-----------DGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 202 ----~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~-----------~g~~i~~d~vv~a~G~~p~~~ 266 (434)
.-..++...+.+...+.|++++.++.+.++..++++++.++... +..++.++.||.|+|......
T Consensus 97 g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~ 176 (257)
T PRK04176 97 GLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVV 176 (257)
T ss_pred cceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHH
Confidence 01124556677777889999999999999876445466666543 224789999999999654432
Q ss_pred -hh-hc----cccc-cCC--------cEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhc
Q 013890 267 -LF-KG----QVAE-NKG--------GIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 331 (434)
Q Consensus 267 -~~-~~----~~~~-~~g--------~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 331 (434)
.+ +. .... ..+ ...|+.+-+. .|++|++|=++.... |.++=-+....=...|+.||+.|+.
T Consensus 177 ~~l~~~~~~~~~~~~g~~~~~~~~~e~~v~~~t~~~-~~g~~~~gm~~~~~~---~~~rmg~~fg~m~~sg~~~a~~~~~ 252 (257)
T PRK04176 177 SVLARKGPELGIEVPGEKSMWAERGEKLVVENTGEV-YPGLYVAGMAANAVH---GLPRMGPIFGGMLLSGKKVAELILE 252 (257)
T ss_pred HHHHHHcCCcccccCCccccccCchHHHHHhcCCeE-cCCEEEeehhhhhhc---CCCccCchhHhHHHhHHHHHHHHHH
Confidence 22 11 1111 111 2334444444 899999998776432 2222113333334688999998886
Q ss_pred cC
Q 013890 332 TE 333 (434)
Q Consensus 332 ~~ 333 (434)
.+
T Consensus 253 ~~ 254 (257)
T PRK04176 253 KL 254 (257)
T ss_pred Hh
Confidence 64
No 139
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.85 E-value=1.6e-08 Score=100.40 Aligned_cols=39 Identities=38% Similarity=0.539 Sum_probs=35.7
Q ss_pred CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
|+..++||||||||.|||.||..+++.|.+ |+|+||...
T Consensus 2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~---V~l~~K~~~ 40 (562)
T COG1053 2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLK---VALLSKAPP 40 (562)
T ss_pred cccccCCEEEECCcHHHHHHHHHHHhcCCc---EEEEEcccc
Confidence 556789999999999999999999999987 999999976
No 140
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.85 E-value=1.3e-08 Score=94.34 Aligned_cols=120 Identities=23% Similarity=0.398 Sum_probs=71.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC--Cccccc--------------------cCCCC-CCC
Q 013890 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP--ALSKAY--------------------LFPEG-TAR 62 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~--~~~~~~--------------------~~~~~-~~~ 62 (434)
|||+|||||++|+++|+.|++.|.+ |+|+|+........+ .+.... ..... ...
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~---v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLR---VLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVE 77 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEE
Confidence 6999999999999999999999987 999999975322100 000000 00000 000
Q ss_pred CC---Ccceec-CCCCCCCCHhHHHHCCcEEEcCCeEEEEeCCCCE--EEcCC-CcEEEeceEEEccCCCccc
Q 013890 63 LP---GFHVCV-GSGGERLLPEWYKEKGIELILSTEIVRADIASKT--LLSAT-GLIFKYQILVIATGSTVLR 128 (434)
Q Consensus 63 ~~---~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~-~~~~~~d~lilAtG~~~~~ 128 (434)
.+ ...... .......+.+...+.+++++.++++.++..+++. +.+.+ +.++++|.+|+|+|.....
T Consensus 78 ~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~~ 150 (295)
T TIGR02032 78 IPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSIV 150 (295)
T ss_pred eccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcchHH
Confidence 00 000000 0000112233344578999999999987765553 33333 4679999999999986543
No 141
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.85 E-value=4.8e-08 Score=90.78 Aligned_cols=99 Identities=16% Similarity=0.208 Sum_probs=80.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc---c--------CCc----ccCHHHHHHHHHHHHHcCcEEEcCCeEE
Q 013890 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW---C--------MPR----LFTADIAAFYEGYYANKGIKIIKGTVAV 229 (434)
Q Consensus 165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~---~--------~~~----~~~~~~~~~~~~~l~~~gV~~~~~~~v~ 229 (434)
+++|||+|+.|+++|..|.+.|.+|+++++.+. + .+. ..+.++...+.+.+++.|+++++ +.+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~ 80 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI 80 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence 689999999999999999999999999997641 1 121 12367888889999999999998 7888
Q ss_pred EEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChh
Q 013890 230 GFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 230 ~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~ 266 (434)
+++. ++....+.+.+++++.+|.+|+|+|.+|+..
T Consensus 81 ~v~~--~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~ 115 (300)
T TIGR01292 81 KVDL--SDRPFKVKTGDGKEYTAKAVIIATGASARKL 115 (300)
T ss_pred EEEe--cCCeeEEEeCCCCEEEeCEEEECCCCCcccC
Confidence 9887 3333467777888999999999999988654
No 142
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.85 E-value=3.2e-07 Score=82.38 Aligned_cols=172 Identities=16% Similarity=0.133 Sum_probs=111.6
Q ss_pred HHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc----------------------------------
Q 013890 157 AIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL---------------------------------- 202 (434)
Q Consensus 157 ~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~---------------------------------- 202 (434)
.+.....-.++|||+|+.|+-+|..+++.|.+|.++++.+.+....
T Consensus 15 ~~~~~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~ 94 (254)
T TIGR00292 15 DLLDYAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGY 94 (254)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCce
Confidence 3333456789999999999999999999999999999876432100
Q ss_pred ---cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCC-cEEEEEeCC-----------CcEEEcCEEEEccCCccC-hh
Q 013890 203 ---FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG-EVNEVKLKD-----------GRTLEADIVVVGVGGRPL-IS 266 (434)
Q Consensus 203 ---~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g-~~~~v~~~~-----------g~~i~~d~vv~a~G~~p~-~~ 266 (434)
...++.+.+.+...+.|++++.++.+.++...+++ ++.++.+.. ..++.++.||.|+|.... ..
T Consensus 95 ~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~ 174 (254)
T TIGR00292 95 VVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVA 174 (254)
T ss_pred EEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHH
Confidence 11245566667778899999999999998764332 566776542 247899999999996543 33
Q ss_pred hhhc--cccc-c-----CCcEE--------eCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHh
Q 013890 267 LFKG--QVAE-N-----KGGIE--------TDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM 330 (434)
Q Consensus 267 ~~~~--~~~~-~-----~g~i~--------vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 330 (434)
++.. .+.. . .+... |+.+-+ -+|++|++|=.+.... |.++=-+....=...|+.||+.|+
T Consensus 175 ~l~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~-~~~g~~~~gm~~~~~~---~~~rmgp~fg~m~~sg~~~a~~~~ 250 (254)
T TIGR00292 175 VCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHENTRE-VVPNLYVAGMAVAAVH---GLPRMGPIFGGMLLSGKHVAEQIL 250 (254)
T ss_pred HHHHHcCcccCCcccCCchhhhhhhhHHHHHhccCc-ccCCEEEechhhhhhc---CCCCcCchHHHHHHhhHHHHHHHH
Confidence 3321 1111 0 11222 223333 3899999997775322 222211333333468899998887
Q ss_pred cc
Q 013890 331 AT 332 (434)
Q Consensus 331 ~~ 332 (434)
..
T Consensus 251 ~~ 252 (254)
T TIGR00292 251 EK 252 (254)
T ss_pred HH
Confidence 64
No 143
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.84 E-value=4.1e-08 Score=99.34 Aligned_cols=54 Identities=17% Similarity=0.095 Sum_probs=39.1
Q ss_pred cCCcEEeCCCCCCCCCceEEecccccccccccCccc-ccccHHHHHHHHHHHHHHHhc
Q 013890 275 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMR-RVEHVDHARKSAEQAVKTIMA 331 (434)
Q Consensus 275 ~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~-~~~~~~~A~~~g~~aa~~i~~ 331 (434)
..|+|.+|.+.+|++|++||+|+|++.. +|..+ -......+.-.|++|++++..
T Consensus 369 ~~gG~~~d~~~~t~i~gL~a~Ge~~~~~---hg~nrl~~~sl~~~~v~g~~Ag~~aa~ 423 (603)
T TIGR01811 369 TMGGLWVDYDQMTNIPGLFAAGECDFSQ---HGANRLGANSLLSAIADGYFALPFTIP 423 (603)
T ss_pred eCCCeeECCCCcccCCCEEECcccccCc---CCCccchhHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999999997532 22221 113455667778888877654
No 144
>PRK06834 hypothetical protein; Provisional
Probab=98.83 E-value=2.2e-08 Score=98.95 Aligned_cols=124 Identities=26% Similarity=0.372 Sum_probs=76.7
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC--CCC-Cccc-------------cccCCCCCCCCCCcc-
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY--ERP-ALSK-------------AYLFPEGTARLPGFH- 67 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~--~~~-~~~~-------------~~~~~~~~~~~~~~~- 67 (434)
.+||+||||||+|+++|+.|+++|++ |+|||+.+...+ .+. .++. .+...........+.
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~---v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~ 79 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVD---VAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAA 79 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeee
Confidence 58999999999999999999999998 999999875321 111 1100 000000000000000
Q ss_pred --eecC---C--CC---------CCCCHhHHHHCCcEEEcCCeEEEEeCCCCE--EEcCCCcEEEeceEEEccCCCcccc
Q 013890 68 --VCVG---S--GG---------ERLLPEWYKEKGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 68 --~~~~---~--~~---------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lilAtG~~~~~p 129 (434)
.... . .. ...+.+.+++.+++++.+++++.+..++.. +.+.++.++.+|+||.|.|......
T Consensus 80 ~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~vR 159 (488)
T PRK06834 80 TRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLVR 159 (488)
T ss_pred EecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCcH
Confidence 0000 0 00 011223345578999999999999876653 4556677899999999999987655
Q ss_pred cC
Q 013890 130 TD 131 (434)
Q Consensus 130 ~~ 131 (434)
..
T Consensus 160 ~~ 161 (488)
T PRK06834 160 KA 161 (488)
T ss_pred hh
Confidence 44
No 145
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.83 E-value=1.3e-08 Score=98.39 Aligned_cols=127 Identities=17% Similarity=0.205 Sum_probs=76.9
Q ss_pred CC-CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC-------Ccc---------ccccCCCC---C
Q 013890 1 MA-EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP-------ALS---------KAYLFPEG---T 60 (434)
Q Consensus 1 Mm-~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~-------~~~---------~~~~~~~~---~ 60 (434)
|| ...+||+|||||++|+++|+.|+++|++ |+|||+.+...+... .++ -+++..-. .
T Consensus 1 ~~~~~~~dV~IvGaG~aGl~~A~~La~~G~~---v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~ 77 (392)
T PRK08773 1 MSRRSRRDAVIVGGGVVGAACALALADAGLS---VALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARA 77 (392)
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHhcCCCE---EEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhC
Confidence 44 4568999999999999999999999987 999999864322110 000 00000000 0
Q ss_pred CCCCCcc---------eec-----CCCC----------CCCCHhHHHHCCcEEEcCCeEEEEeCCCC--EEEcCCCcEEE
Q 013890 61 ARLPGFH---------VCV-----GSGG----------ERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFK 114 (434)
Q Consensus 61 ~~~~~~~---------~~~-----~~~~----------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~ 114 (434)
..+..+. ... +... ...+.+.+++.+++++.++.++.+..++. ++++.++.++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ 157 (392)
T PRK08773 78 QPYRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLE 157 (392)
T ss_pred CcccEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEE
Confidence 0000000 000 0000 00111223456899999999999876554 35556778899
Q ss_pred eceEEEccCCCccccc
Q 013890 115 YQILVIATGSTVLRLT 130 (434)
Q Consensus 115 ~d~lilAtG~~~~~p~ 130 (434)
+|.||.|+|.......
T Consensus 158 a~~vV~AdG~~S~vr~ 173 (392)
T PRK08773 158 AALAIAADGAASTLRE 173 (392)
T ss_pred eCEEEEecCCCchHHH
Confidence 9999999998765443
No 146
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.83 E-value=1.3e-08 Score=102.82 Aligned_cols=100 Identities=18% Similarity=0.183 Sum_probs=67.1
Q ss_pred CCcEEEECCCHHH-HHHHHHHHHCCCeEEEEeeCCccCCc-------------ccCHHHHHHHHHHHHHcCcEEEcCCeE
Q 013890 163 NGKAVVVGGGYIG-LELSAALKINNIDVSMVYPEPWCMPR-------------LFTADIAAFYEGYYANKGIKIIKGTVA 228 (434)
Q Consensus 163 ~~~vvVvG~g~~g-~e~a~~l~~~g~~v~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~gV~~~~~~~v 228 (434)
..++.++|++.++ .+++..+...+..+.+..+..+++.. ..+..+.+.+.+.+++.|++++.++.+
T Consensus 161 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v 240 (581)
T PRK06134 161 LRETSFMGMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLLKSAEDLGVRIWESAPA 240 (581)
T ss_pred cccccccccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHhCCCEEEcCCEE
Confidence 4566678877765 67777666665554443322221110 124567788888999999999999999
Q ss_pred EEEEecCCCcEEEEEeC--CCc-EEEc-CEEEEccCCcc
Q 013890 229 VGFTTNADGEVNEVKLK--DGR-TLEA-DIVVVGVGGRP 263 (434)
Q Consensus 229 ~~i~~~~~g~~~~v~~~--~g~-~i~~-d~vv~a~G~~p 263 (434)
+++.. +++++.+|... ++. ++.+ +.||+|+|--.
T Consensus 241 ~~l~~-~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 278 (581)
T PRK06134 241 RELLR-EDGRVAGAVVETPGGLQEIRARKGVVLAAGGFP 278 (581)
T ss_pred EEEEE-eCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence 99876 36777666553 333 5788 99999998443
No 147
>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....
Probab=98.83 E-value=2.7e-09 Score=82.98 Aligned_cols=88 Identities=19% Similarity=0.177 Sum_probs=65.2
Q ss_pred CCeeEEeecCcceEEeecCCCc------EEE-----EcCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HH
Q 013890 344 LPYFYSRAFDLSWQFYGDNVGD------TVL-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KA 406 (434)
Q Consensus 344 ~p~~~~~~~~~~~~~~G~~~~~------~~~-----~~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~ 406 (434)
+|++.+..|+++.+ |+++.+ .+. +....+. .+.++|+|+++ ++|+|||+|++|++++|+ +.
T Consensus 1 vP~~vft~p~ia~v--Glte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~IlGa~~vg~~a~e~I~~ 78 (110)
T PF02852_consen 1 VPTVVFTDPEIASV--GLTEEEARKQGIDYEVVTVPFKSNDRARYYPETEGFVKLIFDKKTGRILGAQIVGPNASELINE 78 (110)
T ss_dssp CEEEEESSSEEEEE--ES-HHHHHHHTSGEEEEEEEEGGEHHHHHTTTTEEEEEEEEETTTTBEEEEEEEETTHHHHHHH
T ss_pred CCEEEECCCceEEE--ccCHHHHHhccCceeeeeecccccchhcccCCcceeeEEEEEeeccceeeeeeecCchHHHHHH
Confidence 46766666665555 776521 111 1111111 34678999888 479999999999999997 99
Q ss_pred HHHHHHcCCCCCChhhhhccCCCcccc
Q 013890 407 IAKVARVQPSVESLDVLKNEGLSFASK 433 (434)
Q Consensus 407 ~~~~i~~~~~~~~~~~~~~~~~~~~~~ 433 (434)
++.+|++++|++++.....+.++|++.
T Consensus 79 ~~~ai~~~~t~~~l~~~~~~~Pt~se~ 105 (110)
T PF02852_consen 79 LALAIQNGLTVEDLADDIFYHPTFSEA 105 (110)
T ss_dssp HHHHHHTTSBHHHHHTSBSSSTSTGHH
T ss_pred HHHHHHcCCCHHHHhCCeeeCCChhHH
Confidence 999999999999999999999999875
No 148
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.83 E-value=2.4e-07 Score=89.69 Aligned_cols=62 Identities=16% Similarity=0.150 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccCh
Q 013890 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~ 265 (434)
..++.+.+.+.++..|.+++++++|++|..++++++.+|++++|+++.|+.||....+.|..
T Consensus 231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~~ 292 (443)
T PTZ00363 231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPDK 292 (443)
T ss_pred HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECccccccc
Confidence 45788888888999999999999999998755677888999999999999999988887763
No 149
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.82 E-value=1.6e-08 Score=90.97 Aligned_cols=117 Identities=19% Similarity=0.187 Sum_probs=68.8
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCC-----------CCC------CCcc
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT-----------ARL------PGFH 67 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~-----------~~~------~~~~ 67 (434)
.+||+||||||||++||++|++.|++ |+|+|+........ ...+.+.+... ..+ +++.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~---V~liEk~~~~Ggg~--~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~ 99 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLK---VAVFERKLSFGGGM--WGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLY 99 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCe---EEEEecCCCCCCcc--ccCccccccccchHHHHHHHHHCCCCceeecCcce
Confidence 58999999999999999999999987 99999987542110 00111100000 000 0000
Q ss_pred eecCCCCCCCCHhHHHHCCcEEEcCCeEEEEeCCCC-EE---EcC-----------CCcEEEeceEEEccCCCc
Q 013890 68 VCVGSGGERLLPEWYKEKGIELILSTEIVRADIASK-TL---LSA-----------TGLIFKYQILVIATGSTV 126 (434)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~-~v---~~~-----------~~~~~~~d~lilAtG~~~ 126 (434)
..........+.+...+.|++++.++.+.++..++. .+ ... +...+.++.+|+|||...
T Consensus 100 ~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 100 VADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred eccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 000000001122334557999999998888765333 22 111 224789999999999754
No 150
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.82 E-value=2.8e-08 Score=89.14 Aligned_cols=116 Identities=19% Similarity=0.181 Sum_probs=69.2
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCC------C-----CCCC------Ccc
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEG------T-----ARLP------GFH 67 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~------~-----~~~~------~~~ 67 (434)
.+||+|||||+||++||+.|+++|++ |+|+||+..+.... . ..+.+.+.. . ..++ ++.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~---V~vlEk~~~~Ggg~-~-~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~ 95 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLK---VCVLERSLAFGGGS-W-GGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYV 95 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCccc-c-CCCcceecccccchHHHHHHHCCCCeeeccCceE
Confidence 58999999999999999999999987 99999997643210 0 000000000 0 0001 000
Q ss_pred eecCCCCCCCCHhHHHHCCcEEEcCCeEEEEeCCCC--E---EEcC-----------CCcEEEeceEEEccCCC
Q 013890 68 VCVGSGGERLLPEWYKEKGIELILSTEIVRADIASK--T---LLSA-----------TGLIFKYQILVIATGST 125 (434)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~---v~~~-----------~~~~~~~d~lilAtG~~ 125 (434)
..........+.+...+.+++++.++.+.++..++. . +.+. +...+.++.+|.|||..
T Consensus 96 ~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 96 VADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD 169 (254)
T ss_pred EeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence 000000011222333467999999999988775443 2 2221 12478999999999954
No 151
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.81 E-value=2.2e-08 Score=96.67 Aligned_cols=39 Identities=26% Similarity=0.445 Sum_probs=36.0
Q ss_pred CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
||++.+||+|||||++|+++|..|++.|++ |+|||+.+.
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~---v~liE~~~~ 41 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGAS---VALVAPEPP 41 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCe---EEEEeCCCC
Confidence 777789999999999999999999999987 999999864
No 152
>PRK09126 hypothetical protein; Provisional
Probab=98.80 E-value=1.8e-08 Score=97.42 Aligned_cols=126 Identities=21% Similarity=0.280 Sum_probs=75.3
Q ss_pred CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC------CC-Cccc---------ccc---CCCCCC
Q 013890 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE------RP-ALSK---------AYL---FPEGTA 61 (434)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~------~~-~~~~---------~~~---~~~~~~ 61 (434)
|| ++||+|||||++|+++|..|+++|++ |+|+|+.+..... +. .++. +++ ......
T Consensus 1 ~~--~~dviIvGgG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~ 75 (392)
T PRK09126 1 MM--HSDIVVVGAGPAGLSFARSLAGSGLK---VTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEIS 75 (392)
T ss_pred CC--cccEEEECcCHHHHHHHHHHHhCCCc---EEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCC
Confidence 55 59999999999999999999999998 9999998652110 00 0000 000 000000
Q ss_pred CCCCcc---------eecCC-----CCC------CCCHh----H-HHHCCcEEEcCCeEEEEeCCCC--EEEcCCCcEEE
Q 013890 62 RLPGFH---------VCVGS-----GGE------RLLPE----W-YKEKGIELILSTEIVRADIASK--TLLSATGLIFK 114 (434)
Q Consensus 62 ~~~~~~---------~~~~~-----~~~------~~~~~----~-~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~ 114 (434)
....+. ..... ... ....+ . .+..+++++.++.++.+..+.. .|.+.++.++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ 155 (392)
T PRK09126 76 PLRDAKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLT 155 (392)
T ss_pred ccceEEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEE
Confidence 000000 00000 000 00111 1 1235899999999999876554 35566788999
Q ss_pred eceEEEccCCCcccccC
Q 013890 115 YQILVIATGSTVLRLTD 131 (434)
Q Consensus 115 ~d~lilAtG~~~~~p~~ 131 (434)
+|.+|.|.|........
T Consensus 156 a~~vI~AdG~~S~vr~~ 172 (392)
T PRK09126 156 ARLLVAADSRFSATRRQ 172 (392)
T ss_pred eCEEEEeCCCCchhhHh
Confidence 99999999987665543
No 153
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.80 E-value=2.3e-07 Score=90.48 Aligned_cols=58 Identities=21% Similarity=0.269 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p 263 (434)
+..+...+.+.+++.|++++.+++|++++.+ ++.+..+.+.++ ++.+|.||+|+|...
T Consensus 200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~~-~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGGG-VITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence 3467778888889999999999999999863 444556766655 799999999999654
No 154
>PRK06184 hypothetical protein; Provisional
Probab=98.79 E-value=3e-08 Score=99.01 Aligned_cols=124 Identities=21% Similarity=0.220 Sum_probs=73.7
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC-CCC-Ccc-------------cc------------ccC
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY-ERP-ALS-------------KA------------YLF 56 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~-~~~-~~~-------------~~------------~~~ 56 (434)
+++||+||||||+|+++|..|+++|++ |+|||+.+...- .+. .+. .. ++.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~---v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~ 78 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVS---FRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYR 78 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEe
Confidence 368999999999999999999999998 999999865211 000 000 00 000
Q ss_pred CCC-CCC--CC---------CcceecCCC---CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCE--EEc---CCCcEEEec
Q 013890 57 PEG-TAR--LP---------GFHVCVGSG---GERLLPEWYKEKGIELILSTEIVRADIASKT--LLS---ATGLIFKYQ 116 (434)
Q Consensus 57 ~~~-~~~--~~---------~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~---~~~~~~~~d 116 (434)
... ... +. .+....... ....+.+.+.+.+++++.+++++++..++.. +++ .+++++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~ 158 (502)
T PRK06184 79 DDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRAR 158 (502)
T ss_pred CCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeC
Confidence 000 000 00 000000000 0011223344568999999999998866543 333 455789999
Q ss_pred eEEEccCCCccccc
Q 013890 117 ILVIATGSTVLRLT 130 (434)
Q Consensus 117 ~lilAtG~~~~~p~ 130 (434)
+||.|+|.+.....
T Consensus 159 ~vVgADG~~S~vR~ 172 (502)
T PRK06184 159 YLVGADGGRSFVRK 172 (502)
T ss_pred EEEECCCCchHHHH
Confidence 99999998764433
No 155
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.77 E-value=2.5e-07 Score=90.72 Aligned_cols=90 Identities=14% Similarity=0.129 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHCCCeEEEEeeCCc--cCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEec-CC--CcEEEEEeC-C
Q 013890 173 YIGLELSAALKINNIDVSMVYPEPW--CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN-AD--GEVNEVKLK-D 246 (434)
Q Consensus 173 ~~g~e~a~~l~~~g~~v~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~-~~--g~~~~v~~~-~ 246 (434)
.++.|+...+.+.=.++.-+..... +....-.+.+...+.+.++++||+|+++++|+++..+ ++ ++++++... +
T Consensus 192 hSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~ 271 (576)
T PRK13977 192 HSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRN 271 (576)
T ss_pred hHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeC
Confidence 5788888888765222111111111 1111113678899999999999999999999999874 22 567788774 3
Q ss_pred Cc-----EEEcCEEEEccCCc
Q 013890 247 GR-----TLEADIVVVGVGGR 262 (434)
Q Consensus 247 g~-----~i~~d~vv~a~G~~ 262 (434)
|+ ..+.|.||+++|.-
T Consensus 272 ~~~~~I~l~~~DlVivTnGs~ 292 (576)
T PRK13977 272 GKEETIDLTEDDLVFVTNGSI 292 (576)
T ss_pred CceeEEEecCCCEEEEeCCcC
Confidence 32 24679999999953
No 156
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.77 E-value=3.4e-07 Score=89.07 Aligned_cols=58 Identities=28% Similarity=0.358 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~ 262 (434)
+..+...+.+.+++.|++++.+++|+++...+++.+..|.+.+| ++.++.||+|+|-.
T Consensus 182 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~ 239 (407)
T TIGR01373 182 HDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGH 239 (407)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChh
Confidence 34566667788899999999999999997644566667888888 69999998887743
No 157
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.76 E-value=4.9e-07 Score=89.46 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC--CC--cEEEcCEEEEccC-CccChhhh
Q 013890 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK--DG--RTLEADIVVVGVG-GRPLISLF 268 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~--~g--~~i~~d~vv~a~G-~~p~~~~~ 268 (434)
...+...+.+.+++.|++++.+++++++.. +++++..+... ++ ..+.++.||+|+| +..+.+++
T Consensus 130 g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~-~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~~~ 198 (466)
T PRK08274 130 GKALVNALYRSAERLGVEIRYDAPVTALEL-DDGRFVGARAGSAAGGAERIRAKAVVLAAGGFESNREWL 198 (466)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEe-cCCeEEEEEEEccCCceEEEECCEEEECCCCCCCCHHHH
Confidence 356777888888999999999999999986 46777777653 33 3678999999998 45554444
No 158
>PRK07045 putative monooxygenase; Reviewed
Probab=98.75 E-value=3e-08 Score=95.80 Aligned_cols=125 Identities=18% Similarity=0.202 Sum_probs=75.2
Q ss_pred CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC-CC-Cccc---c------ccCC---CCCCCCCCc
Q 013890 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE-RP-ALSK---A------YLFP---EGTARLPGF 66 (434)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~-~~-~~~~---~------~~~~---~~~~~~~~~ 66 (434)
|++.++||+||||||+|+++|..|++.|++ |+|+|+.+..... +. .+.. . ++.. ........+
T Consensus 1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~ 77 (388)
T PRK07045 1 MKNNPVDVLINGSGIAGVALAHLLGARGHS---VTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAM 77 (388)
T ss_pred CCCceeEEEEECCcHHHHHHHHHHHhcCCc---EEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccce
Confidence 677789999999999999999999999997 9999999753210 00 0000 0 0000 000000000
Q ss_pred ce----------ecCC---CCC------CCCHhHHH-----HCCcEEEcCCeEEEEeCCCC----EEEcCCCcEEEeceE
Q 013890 67 HV----------CVGS---GGE------RLLPEWYK-----EKGIELILSTEIVRADIASK----TLLSATGLIFKYQIL 118 (434)
Q Consensus 67 ~~----------~~~~---~~~------~~~~~~~~-----~~~v~~~~~~~v~~i~~~~~----~v~~~~~~~~~~d~l 118 (434)
.. .... ... ..+.+.+. ..+++++.+++++.+..+.. .|+..+++++.+|.+
T Consensus 78 ~~~~~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~v 157 (388)
T PRK07045 78 RLYHDKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVL 157 (388)
T ss_pred EEecCCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEE
Confidence 00 0000 000 01111111 24789999999999876432 366678889999999
Q ss_pred EEccCCCccc
Q 013890 119 VIATGSTVLR 128 (434)
Q Consensus 119 ilAtG~~~~~ 128 (434)
|-|.|.....
T Consensus 158 IgADG~~S~v 167 (388)
T PRK07045 158 VGADGARSMI 167 (388)
T ss_pred EECCCCChHH
Confidence 9999987543
No 159
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.75 E-value=4.5e-08 Score=95.07 Aligned_cols=122 Identities=17% Similarity=0.212 Sum_probs=73.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcC--CCCCcEEEEeCCCCCCCC---CC-Cccc---------cccCC----C--------
Q 013890 6 FKYVILGGGVSAGYAAREFAKQG--VKPGELAIISKEAVAPYE---RP-ALSK---------AYLFP----E-------- 58 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g--~~~~~V~vie~~~~~~~~---~~-~~~~---------~~~~~----~-------- 58 (434)
|||+|||||++|+++|..|+++| ++ |+|+|+.+..... +. .++. +++.. .
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~---v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 78 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLP---VTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVI 78 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCE---EEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEE
Confidence 89999999999999999999985 65 9999998642111 10 0000 00000 0
Q ss_pred ---CCCC--CCC-ccee----cCCC---------CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCE--EEcCCCcEEEece
Q 013890 59 ---GTAR--LPG-FHVC----VGSG---------GERLLPEWYKEKGIELILSTEIVRADIASKT--LLSATGLIFKYQI 117 (434)
Q Consensus 59 ---~~~~--~~~-~~~~----~~~~---------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~ 117 (434)
.... ... .... .+.. ....+.+.+.+.+++++.+++++.++.+.+. +.+.++.++.+|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~ 158 (403)
T PRK07333 79 TDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARL 158 (403)
T ss_pred EeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCE
Confidence 0000 000 0000 0000 0011223334568999999999998766654 5556788899999
Q ss_pred EEEccCCCccccc
Q 013890 118 LVIATGSTVLRLT 130 (434)
Q Consensus 118 lilAtG~~~~~p~ 130 (434)
||.|+|.......
T Consensus 159 vI~AdG~~S~vr~ 171 (403)
T PRK07333 159 LVAADGARSKLRE 171 (403)
T ss_pred EEEcCCCChHHHH
Confidence 9999998765444
No 160
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.75 E-value=4.2e-07 Score=87.55 Aligned_cols=56 Identities=20% Similarity=0.230 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~ 262 (434)
+..+.+.+.+.+++.|++++.+++|.++..+ ++. ..|.++++ ++.+|.||+|+|..
T Consensus 144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~-~~v~~~~~-~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 144 AEKALRALQELAEAHGATVRDGTKVVEIEPT-ELL-VTVKTTKG-SYQANKLVVTAGAW 199 (380)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCe-EEEEeCCC-EEEeCEEEEecCcc
Confidence 4567778888888999999999999999873 333 35777666 79999999999964
No 161
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.74 E-value=7.1e-08 Score=96.41 Aligned_cols=59 Identities=22% Similarity=0.262 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~ 264 (434)
..+.+.+.+.+++.|+++++++.|.+|.. +++++..|.+++|+++.+|.||+|++....
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~-~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~ 277 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIET-EGGRATAVHLADGERLDADAVVSNADLHHT 277 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEe-eCCEEEEEEECCCCEEECCEEEECCcHHHH
Confidence 56788899999999999999999999986 356667889999989999999999886443
No 162
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.74 E-value=3.6e-07 Score=85.21 Aligned_cols=85 Identities=20% Similarity=0.163 Sum_probs=66.1
Q ss_pred HHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 013890 182 LKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 182 l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~ 261 (434)
+...|....++.-..+-+....-+.+.+.+.+.+++.|++++++++|.++.. +++.+..+.+++|.++++|.||+|+|+
T Consensus 150 ~~aa~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~-~~~~~~~v~~~~g~~i~~~~vvlA~Gr 228 (486)
T COG2509 150 FRAAGAGEEILPIYQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEI-EDNEVLGVKLTKGEEIEADYVVLAPGR 228 (486)
T ss_pred HHHhCCCceeeeccccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEe-cCCceEEEEccCCcEEecCEEEEccCc
Confidence 3444554445443333333335688999999999999999999999999987 466677899999999999999999999
Q ss_pred ccChhh
Q 013890 262 RPLISL 267 (434)
Q Consensus 262 ~p~~~~ 267 (434)
....++
T Consensus 229 sg~dw~ 234 (486)
T COG2509 229 SGRDWF 234 (486)
T ss_pred chHHHH
Confidence 877654
No 163
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.73 E-value=2.8e-07 Score=89.76 Aligned_cols=57 Identities=26% Similarity=0.293 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-----cEEEcCEEEEccCCcc
Q 013890 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG-----RTLEADIVVVGVGGRP 263 (434)
Q Consensus 205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g-----~~i~~d~vv~a~G~~p 263 (434)
..+...+.+.+++.|++++.+++|.+++.+ ++.+ .+.+.++ .++.+|.||+|+|...
T Consensus 197 ~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~-~~~~-~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 197 HKFTTGLAAACARLGVQFRYGQEVTSIKTD-GGGV-VLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEE-EEEEEcCCCCccceEecCEEEECCCcCh
Confidence 456677888889999999999999999863 3332 3433322 3789999999999654
No 164
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.71 E-value=3.4e-08 Score=96.56 Aligned_cols=59 Identities=36% Similarity=0.651 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~ 264 (434)
..+.+.|.+..++.||+++.++ |..+..+++|.+..|.+++|+++.+|++|=|+|++..
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 4677788888999999999885 7777766788899999999999999999999998654
No 165
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.71 E-value=2.3e-07 Score=91.56 Aligned_cols=54 Identities=20% Similarity=0.244 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 013890 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~ 261 (434)
+..+...+.+.+++.|++++.++.|.+++. ++ ...|.+.+| ++.+|.||+|+|.
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~--~~-~~~v~t~~g-~v~A~~VV~Atga 235 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEE--GQ-PAVVRTPDG-QVTADKVVLALNA 235 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEee--CC-ceEEEeCCc-EEECCEEEEcccc
Confidence 567778888899999999999999999975 22 245777777 6999999999994
No 166
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.71 E-value=8.8e-08 Score=92.65 Aligned_cols=125 Identities=20% Similarity=0.276 Sum_probs=74.4
Q ss_pred CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC--------Ccc---------ccccCCCCC-CC
Q 013890 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP--------ALS---------KAYLFPEGT-AR 62 (434)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~--------~~~---------~~~~~~~~~-~~ 62 (434)
|..+.+||+|||||++|+++|..|++.|++ |+|+|+.+...+... .++ -+++..... ..
T Consensus 1 ~~~~~~dViIvGgG~aGl~~A~~La~~G~~---V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~ 77 (391)
T PRK08020 1 MTNQPTDIAIVGGGMVGAALALGLAQHGFS---VAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRS 77 (391)
T ss_pred CCcccccEEEECcCHHHHHHHHHHhcCCCE---EEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhC
Confidence 556679999999999999999999999987 999999863222100 000 000000000 00
Q ss_pred CC----------CcceecCC-----CC------CCCCHhH----HHHC-CcEEEcCCeEEEEeCCCC--EEEcCCCcEEE
Q 013890 63 LP----------GFHVCVGS-----GG------ERLLPEW----YKEK-GIELILSTEIVRADIASK--TLLSATGLIFK 114 (434)
Q Consensus 63 ~~----------~~~~~~~~-----~~------~~~~~~~----~~~~-~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~ 114 (434)
.+ ........ .. ...+.+. +++. +++++.++.++.+..+.. .+.+.++.++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ 157 (391)
T PRK08020 78 HPYRRLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQ 157 (391)
T ss_pred cccceEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEE
Confidence 00 00000000 00 0011111 2333 899999999999875554 35556778899
Q ss_pred eceEEEccCCCccc
Q 013890 115 YQILVIATGSTVLR 128 (434)
Q Consensus 115 ~d~lilAtG~~~~~ 128 (434)
+|.||.|.|.....
T Consensus 158 a~~vI~AdG~~S~v 171 (391)
T PRK08020 158 AKLVIGADGANSQV 171 (391)
T ss_pred eCEEEEeCCCCchh
Confidence 99999999987654
No 167
>PRK06185 hypothetical protein; Provisional
Probab=98.71 E-value=5.6e-08 Score=94.54 Aligned_cols=38 Identities=24% Similarity=0.384 Sum_probs=34.3
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
|.+.+||+|||||++|+++|+.|++.|++ |+|+|+.+.
T Consensus 3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~~---v~liE~~~~ 40 (407)
T PRK06185 3 EVETTDCCIVGGGPAGMMLGLLLARAGVD---VTVLEKHAD 40 (407)
T ss_pred ccccccEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCc
Confidence 35679999999999999999999999987 999999854
No 168
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.70 E-value=3.9e-07 Score=87.29 Aligned_cols=53 Identities=23% Similarity=0.307 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890 204 TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~-gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p 263 (434)
+..+...+.+.+.+. |++++.+++|.+++. + .|.+.+| ++.+|.||+|+|...
T Consensus 144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~----~v~t~~g-~i~a~~VV~A~G~~s 197 (365)
T TIGR03364 144 PREAIPALAAYLAEQHGVEFHWNTAVTSVET--G----TVRTSRG-DVHADQVFVCPGADF 197 (365)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C----eEEeCCC-cEEeCEEEECCCCCh
Confidence 456677777777765 999999999999964 2 4677777 478999999999653
No 169
>PRK08244 hypothetical protein; Provisional
Probab=98.70 E-value=6.8e-08 Score=96.26 Aligned_cols=123 Identities=19% Similarity=0.289 Sum_probs=72.5
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC-CCC-Cc-------------cccccCCC----------C
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY-ERP-AL-------------SKAYLFPE----------G 59 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~-~~~-~~-------------~~~~~~~~----------~ 59 (434)
++||+||||||+|+++|..|+++|++ |+|||+.+.... .+. .+ ...+.... .
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~---v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~ 78 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVK---TCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGL 78 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecc
Confidence 48999999999999999999999997 999999865211 110 00 00000000 0
Q ss_pred C--CCCC------CcceecCC-CCCCCCHhHHHHCCcEEEcCCeEEEEeCCCCEE--EcC--CC-cEEEeceEEEccCCC
Q 013890 60 T--ARLP------GFHVCVGS-GGERLLPEWYKEKGIELILSTEIVRADIASKTL--LSA--TG-LIFKYQILVIATGST 125 (434)
Q Consensus 60 ~--~~~~------~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v--~~~--~~-~~~~~d~lilAtG~~ 125 (434)
. ..+. .+...+.. .....+.+.+++.+++++.+++++++..++..+ .+. ++ .++++|++|.|.|.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~ 158 (493)
T PRK08244 79 DTRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAG 158 (493)
T ss_pred cccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCC
Confidence 0 0000 00000000 000112223345689999999999987665543 332 34 479999999999987
Q ss_pred ccccc
Q 013890 126 VLRLT 130 (434)
Q Consensus 126 ~~~p~ 130 (434)
.....
T Consensus 159 S~vR~ 163 (493)
T PRK08244 159 SIVRK 163 (493)
T ss_pred hHHHH
Confidence 65443
No 170
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.70 E-value=6e-07 Score=88.87 Aligned_cols=56 Identities=21% Similarity=0.256 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 013890 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~ 261 (434)
..+.+.+.+.++++|++|+++++|++|.. ++|+..++...+|..+++|.||.+...
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v-~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILV-EGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCEEECCCceEEEEE-eCCcceEEeccccceeccceeEecCch
Confidence 57889999999999999999999999997 455556788888878999999998776
No 171
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.70 E-value=6.1e-08 Score=81.45 Aligned_cols=36 Identities=33% Similarity=0.391 Sum_probs=33.1
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
.-||+||||||+||+||++|++.|++ |+|+|++..+
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~k---V~i~E~~ls~ 65 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLK---VAIFERKLSF 65 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCce---EEEEEeeccc
Confidence 36999999999999999999999998 9999999664
No 172
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.69 E-value=4.9e-07 Score=86.95 Aligned_cols=57 Identities=18% Similarity=0.137 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p 263 (434)
+..+...+.+.+.+.|++++.+++|+++..+ ++ ...+.+++| ++.+|.||+|+|...
T Consensus 148 p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~-~~~v~~~~g-~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 148 PELAIKAHLRLAREAGAELLFNEPVTAIEAD-GD-GVTVTTADG-TYEAKKLVVSAGAWV 204 (376)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEee-CC-eEEEEeCCC-EEEeeEEEEecCcch
Confidence 4566777777788899999999999999873 33 346777777 799999999999653
No 173
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.69 E-value=2.6e-07 Score=90.77 Aligned_cols=57 Identities=18% Similarity=0.274 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHH----cC--cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890 205 ADIAAFYEGYYAN----KG--IKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 205 ~~~~~~~~~~l~~----~g--V~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p 263 (434)
..+...+.+.+++ .| ++++++++|++++.. ++....|.+.+| ++.+|.||+|+|...
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~-~~~~~~V~T~~G-~i~A~~VVvaAG~~S 273 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERS-NDSLYKIHTNRG-EIRARFVVVSACGYS 273 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec-CCCeEEEEECCC-EEEeCEEEECcChhH
Confidence 4677888888888 77 889999999999873 344567888877 699999999999553
No 174
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.68 E-value=5e-07 Score=87.08 Aligned_cols=61 Identities=21% Similarity=0.269 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHcC-cEEEcCCeEEEEEecCCCcEEEEEeC-CCcEEEcCEEEEccCCccChh
Q 013890 204 TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVNEVKLK-DGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~g-V~~~~~~~v~~i~~~~~g~~~~v~~~-~g~~i~~d~vv~a~G~~p~~~ 266 (434)
..++.+.+.+.+.+.+ |+++.+++|+.++.++ +.+ .++++ +|+++.||++|-|=|......
T Consensus 103 ~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~-~~v-~v~l~~dG~~~~a~llVgADG~~S~vR 165 (387)
T COG0654 103 RSDLLNALLEAARALPNVTLRFGAEVEAVEQDG-DGV-TVTLSFDGETLDADLLVGADGANSAVR 165 (387)
T ss_pred hHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC-Cce-EEEEcCCCcEEecCEEEECCCCchHHH
Confidence 3556777888887766 9999999999999844 333 37777 999999999999999776554
No 175
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.68 E-value=5.2e-08 Score=94.60 Aligned_cols=126 Identities=17% Similarity=0.219 Sum_probs=73.7
Q ss_pred CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC-CCC-----CCCC-Cccc---------cccCCCC---CC
Q 013890 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA-VAP-----YERP-ALSK---------AYLFPEG---TA 61 (434)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~-~~~-----~~~~-~~~~---------~~~~~~~---~~ 61 (434)
||. .+||+|||||++|+++|..|++.|++ |+|+|+.. ... ..+. .++. +++..-. ..
T Consensus 1 ~m~-~~dV~IvGaG~~Gl~~A~~L~~~G~~---v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~ 76 (405)
T PRK08850 1 MMQ-SVDVAIIGGGMVGLALAAALKESDLR---IAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAA 76 (405)
T ss_pred CCC-cCCEEEECccHHHHHHHHHHHhCCCE---EEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCC
Confidence 554 68999999999999999999999987 99999962 110 0010 0100 0000000 00
Q ss_pred CCCCccee---------cCCC-----C------CCCCHhH----HHH-CCcEEEcCCeEEEEeCCCC--EEEcCCCcEEE
Q 013890 62 RLPGFHVC---------VGSG-----G------ERLLPEW----YKE-KGIELILSTEIVRADIASK--TLLSATGLIFK 114 (434)
Q Consensus 62 ~~~~~~~~---------~~~~-----~------~~~~~~~----~~~-~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~ 114 (434)
....+... .... . ...+... +.+ .++++..+++++.+..++. ++.+.++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ 156 (405)
T PRK08850 77 PYIAMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALT 156 (405)
T ss_pred cccEEEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEE
Confidence 00000000 0000 0 0001111 122 3789999999999876544 46667888999
Q ss_pred eceEEEccCCCccccc
Q 013890 115 YQILVIATGSTVLRLT 130 (434)
Q Consensus 115 ~d~lilAtG~~~~~p~ 130 (434)
+|.||.|.|.......
T Consensus 157 a~lvIgADG~~S~vR~ 172 (405)
T PRK08850 157 AKLVVGADGANSWLRR 172 (405)
T ss_pred eCEEEEeCCCCChhHH
Confidence 9999999998765443
No 176
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.68 E-value=3.2e-07 Score=88.56 Aligned_cols=83 Identities=18% Similarity=0.239 Sum_probs=59.4
Q ss_pred HHHHHHHHCCCeEEEEeeCCccCCc-ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEE
Q 013890 177 ELSAALKINNIDVSMVYPEPWCMPR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIV 255 (434)
Q Consensus 177 e~a~~l~~~g~~v~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~v 255 (434)
++...+.+.|.+++..... +.++. ....++.+.+.+.+++.|++++.++.+.++..+ ++ ...+.+ +++++.+|.|
T Consensus 77 d~~~~~~~~Gv~~~~~~~g-~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~-~~~v~~-~~~~i~ad~V 152 (400)
T TIGR00275 77 DLIDFFESLGLELKVEEDG-RVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD-DN-GFGVET-SGGEYEADKV 152 (400)
T ss_pred HHHHHHHHcCCeeEEecCC-EeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CC-eEEEEE-CCcEEEcCEE
Confidence 4445667778877765432 33321 134778889999999999999999999999763 23 345666 4568999999
Q ss_pred EEccCCcc
Q 013890 256 VVGVGGRP 263 (434)
Q Consensus 256 v~a~G~~p 263 (434)
|+|+|...
T Consensus 153 IlAtG~~s 160 (400)
T TIGR00275 153 ILATGGLS 160 (400)
T ss_pred EECCCCcc
Confidence 99999643
No 177
>PLN02612 phytoene desaturase
Probab=98.67 E-value=6.6e-07 Score=90.16 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 013890 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~ 261 (434)
+..+.+.+.+.+++.|++++++++|++|+.++++.+.++.+.+|+++.+|.||+|++.
T Consensus 307 ~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 307 PERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV 364 (567)
T ss_pred hHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence 3567788888888999999999999999876677777788888989999999999863
No 178
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.67 E-value=1.3e-07 Score=93.66 Aligned_cols=119 Identities=18% Similarity=0.307 Sum_probs=68.9
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC-CCCCCCCCccccccCCC----CCCCCCC------------
Q 013890 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA-VAPYERPALSKAYLFPE----GTARLPG------------ 65 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~-~~~~~~~~~~~~~~~~~----~~~~~~~------------ 65 (434)
+..|||||||||+||+.||..+++.|.+ |+++|++. ..+.-.|..+.+..... ....+.+
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~k---V~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq 78 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAK---TLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQ 78 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCc---EEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCc
Confidence 3469999999999999999999999988 99999984 22111111111100000 0000000
Q ss_pred cceec---CC--------CCCCCCH----hHHHH-CCcEEEcCCeEEEEeCCCCE---EEcCCCcEEEeceEEEccCCC
Q 013890 66 FHVCV---GS--------GGERLLP----EWYKE-KGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGST 125 (434)
Q Consensus 66 ~~~~~---~~--------~~~~~~~----~~~~~-~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~lilAtG~~ 125 (434)
+.... +. .....+. +.+.+ .+++++.+ .|..+..+++. |.+.++..+.++.+|+|||..
T Consensus 79 ~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~-~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 79 FRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQG-EVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred eeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence 00000 00 0000111 22222 37888765 78877655553 566788899999999999974
No 179
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.66 E-value=2.8e-07 Score=90.43 Aligned_cols=99 Identities=20% Similarity=0.319 Sum_probs=74.1
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|++|+.+|..+++.|.+ |+++++.+...-. . . +.+ .....+.+++
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~l~~-----------~-~---~~~--------~~~~~~~l~~ 210 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSK---VTVLDAASTILPR-----------E-E---PSV--------AALAKQYMEE 210 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCccCCC-----------C-C---HHH--------HHHHHHHHHH
Confidence 46899999999999999999998876 9999998642100 0 0 000 1233566788
Q ss_pred CCcEEEcCCeEEEEeCCCCEEE-cCCCcEEEeceEEEccCCCcccc
Q 013890 85 KGIELILSTEIVRADIASKTLL-SATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~-~~~~~~~~~d~lilAtG~~~~~p 129 (434)
.|++++.++.+..++.++..+. ..++.++.+|.+|+|+|..|...
T Consensus 211 ~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~ 256 (438)
T PRK07251 211 DGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTE 256 (438)
T ss_pred cCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCcc
Confidence 8999999999999987655443 34567899999999999998754
No 180
>PRK07236 hypothetical protein; Provisional
Probab=98.66 E-value=2.2e-07 Score=89.62 Aligned_cols=122 Identities=17% Similarity=0.147 Sum_probs=71.9
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC-C--ccc---cccCCCCC-----CCCC--Ccce--
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP-A--LSK---AYLFPEGT-----ARLP--GFHV-- 68 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~-~--~~~---~~~~~~~~-----~~~~--~~~~-- 68 (434)
+.++|+|||||++|+++|..|++.|++ |+|+|+.+.....+. . +.. ..+..... ...+ ....
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~ 81 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWD---VDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLD 81 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEe
Confidence 358999999999999999999999987 999999864211110 0 000 00000000 0000 0000
Q ss_pred ecCC-----C------CCCCCHhHHHH--CCcEEEcCCeEEEEeCCCCE--EEcCCCcEEEeceEEEccCCCccc
Q 013890 69 CVGS-----G------GERLLPEWYKE--KGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTVLR 128 (434)
Q Consensus 69 ~~~~-----~------~~~~~~~~~~~--~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lilAtG~~~~~ 128 (434)
..+. . ....+.+.+.+ .+++++.+++++++..+.+. +.+.+++++.+|.||.|-|.+...
T Consensus 82 ~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 82 RDGRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTV 156 (386)
T ss_pred CCCCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchH
Confidence 0000 0 00001111211 24678999999999866554 566788899999999999976544
No 181
>PRK08013 oxidoreductase; Provisional
Probab=98.66 E-value=8.8e-08 Score=92.80 Aligned_cols=123 Identities=18% Similarity=0.245 Sum_probs=73.6
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC-------CC-Cccc---------cccCCCC---CCCCC
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE-------RP-ALSK---------AYLFPEG---TARLP 64 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~-------~~-~~~~---------~~~~~~~---~~~~~ 64 (434)
.+||+||||||+|+++|+.|+++|++ |+|+|+.+..... +. .++. +++..-. .....
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~---v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~ 79 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLR---VAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYH 79 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCE---EEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCcccc
Confidence 58999999999999999999999997 9999998752210 00 0000 0110000 00000
Q ss_pred Ccc---------eec-----CCCCC------CCCHhH----HHH-CCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEece
Q 013890 65 GFH---------VCV-----GSGGE------RLLPEW----YKE-KGIELILSTEIVRADIASK--TLLSATGLIFKYQI 117 (434)
Q Consensus 65 ~~~---------~~~-----~~~~~------~~~~~~----~~~-~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~ 117 (434)
.+. ... +.... ..+.+. +.+ .+++++.++++..++.+.. ++++.+++++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~l 159 (400)
T PRK08013 80 GMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARL 159 (400)
T ss_pred EEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeE
Confidence 000 000 00000 001111 222 3799999999999876554 45567888999999
Q ss_pred EEEccCCCccccc
Q 013890 118 LVIATGSTVLRLT 130 (434)
Q Consensus 118 lilAtG~~~~~p~ 130 (434)
||-|.|.+.....
T Consensus 160 vVgADG~~S~vR~ 172 (400)
T PRK08013 160 VVGADGANSWLRN 172 (400)
T ss_pred EEEeCCCCcHHHH
Confidence 9999998765443
No 182
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.66 E-value=8.1e-08 Score=92.57 Aligned_cols=123 Identities=18% Similarity=0.271 Sum_probs=73.4
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC-------CC-Cccc---------cccCCC---CCCCCC
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE-------RP-ALSK---------AYLFPE---GTARLP 64 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~-------~~-~~~~---------~~~~~~---~~~~~~ 64 (434)
.+||+|||||++|+++|+.|++.|++ |+|+|+.+...+. ++ .++. +++..- ....+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~---v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~ 79 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRS---VAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYK 79 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCc---EEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccc
Confidence 48999999999999999999999997 9999987522111 00 0100 000000 000000
Q ss_pred Cc--------ceecCC-----CC--C----CCCHhH----HHH-CCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceE
Q 013890 65 GF--------HVCVGS-----GG--E----RLLPEW----YKE-KGIELILSTEIVRADIASK--TLLSATGLIFKYQIL 118 (434)
Q Consensus 65 ~~--------~~~~~~-----~~--~----~~~~~~----~~~-~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~l 118 (434)
.+ ...... .. . ..+... +.. .+++++.++++.++..++. ++++.++.++++|.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lv 159 (384)
T PRK08849 80 RLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWV 159 (384)
T ss_pred eEEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEE
Confidence 00 000000 00 0 001111 112 4789999999999876554 567788889999999
Q ss_pred EEccCCCccccc
Q 013890 119 VIATGSTVLRLT 130 (434)
Q Consensus 119 ilAtG~~~~~p~ 130 (434)
|.|+|.....-.
T Consensus 160 IgADG~~S~vR~ 171 (384)
T PRK08849 160 IGADGANSQVRQ 171 (384)
T ss_pred EEecCCCchhHH
Confidence 999998775544
No 183
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.65 E-value=5.5e-07 Score=92.87 Aligned_cols=57 Identities=16% Similarity=0.212 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p 263 (434)
+..+...+.+.+++ |++++.++.|+++... ++. ..|.+.+|+.+.+|.||+|+|...
T Consensus 407 p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~-~~~-~~v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 407 PAELCRALLALAGQ-QLTIHFGHEVARLERE-DDG-WQLDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred HHHHHHHHHHhccc-CcEEEeCCEeeEEEEe-CCE-EEEEECCCcEEECCEEEECCCCCc
Confidence 46778888888888 9999999999999863 333 347788887788999999999654
No 184
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.64 E-value=2.1e-07 Score=92.03 Aligned_cols=99 Identities=21% Similarity=0.299 Sum_probs=73.7
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||++|+.+|..|++.|.+ |+++++.+... +. + ...+ .....+.+++
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~l---~~-----~----~~~~-----------~~~~~~~l~~ 223 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSK---VTVIEMLDRIL---PG-----E----DAEV-----------SKVVAKALKK 223 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCCCCC---CC-----C----CHHH-----------HHHHHHHHHH
Confidence 36899999999999999999999876 99999986421 00 0 0000 1234566778
Q ss_pred CCcEEEcCCeEEEEeCCCCEE--EcCCC--cEEEeceEEEccCCCcccc
Q 013890 85 KGIELILSTEIVRADIASKTL--LSATG--LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v--~~~~~--~~~~~d~lilAtG~~~~~p 129 (434)
.+++++.++.+..++.+++.+ ...++ .++.+|.+|+|+|..|...
T Consensus 224 ~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 224 KGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred cCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence 899999999999988665544 33455 4799999999999998755
No 185
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.62 E-value=1.4e-07 Score=91.76 Aligned_cols=123 Identities=18% Similarity=0.258 Sum_probs=73.0
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC--C------CC-CC-Ccc---ccc------cCCCC---CCC
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA--P------YE-RP-ALS---KAY------LFPEG---TAR 62 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~--~------~~-~~-~~~---~~~------~~~~~---~~~ 62 (434)
.+||+|||||++|+++|+.|+++|++ |+|+|+.+.. . +. +. .++ ... +..-. ...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~---v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~ 78 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLE---VLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASP 78 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCE---EEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcc
Confidence 48999999999999999999999987 9999998621 0 00 00 000 000 00000 000
Q ss_pred CCCcce---------ecCC-----CC--C--------CCCHhHHHHCCcEEEcCCeEEEEeCCCCE--EEcCCCcEEEec
Q 013890 63 LPGFHV---------CVGS-----GG--E--------RLLPEWYKEKGIELILSTEIVRADIASKT--LLSATGLIFKYQ 116 (434)
Q Consensus 63 ~~~~~~---------~~~~-----~~--~--------~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d 116 (434)
...+.. .... .. . ..+.+.+.+.+++++.++.+.++..+... |.+.++.++.+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~ 158 (405)
T PRK05714 79 YSEMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAP 158 (405)
T ss_pred ceeEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeC
Confidence 000000 0000 00 0 01112233468999999999998765543 556778889999
Q ss_pred eEEEccCCCccccc
Q 013890 117 ILVIATGSTVLRLT 130 (434)
Q Consensus 117 ~lilAtG~~~~~p~ 130 (434)
.||.|.|.......
T Consensus 159 ~vVgAdG~~S~vR~ 172 (405)
T PRK05714 159 LVVAADGANSAVRR 172 (405)
T ss_pred EEEEecCCCchhHH
Confidence 99999998765444
No 186
>PRK06126 hypothetical protein; Provisional
Probab=98.61 E-value=2.5e-07 Score=93.40 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=34.0
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
+..+||+|||||++|+++|..|+++|++ |+|+|+.+.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~---v~viEr~~~ 41 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVD---SILVERKDG 41 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCC
Confidence 4568999999999999999999999998 999999865
No 187
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.61 E-value=1.2e-07 Score=91.96 Aligned_cols=124 Identities=19% Similarity=0.187 Sum_probs=72.9
Q ss_pred CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCC--ccc---------cccCC--CCCCCCCCcc
Q 013890 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA--LSK---------AYLFP--EGTARLPGFH 67 (434)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~--~~~---------~~~~~--~~~~~~~~~~ 67 (434)
|+ +..||+|||||++|+++|..|++.|++ |+|+|+.+...-.... +.. ++... ........+.
T Consensus 1 ~~-~~~~V~IvGaGiaGl~~A~~L~~~g~~---v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~ 76 (396)
T PRK08163 1 MT-KVTPVLIVGGGIGGLAAALALARQGIK---VKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLT 76 (396)
T ss_pred CC-CCCeEEEECCcHHHHHHHHHHHhCCCc---EEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceE
Confidence 44 468999999999999999999999987 9999998753210000 000 00000 0000000000
Q ss_pred e--------------------ecCCCC----C----CCCHhHHHHC-CcEEEcCCeEEEEeCCCCE--EEcCCCcEEEec
Q 013890 68 V--------------------CVGSGG----E----RLLPEWYKEK-GIELILSTEIVRADIASKT--LLSATGLIFKYQ 116 (434)
Q Consensus 68 ~--------------------~~~~~~----~----~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d 116 (434)
. ..+... . ..+.+.+.+. +++++.++.+..+..++.. +.+.++.++.+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad 156 (396)
T PRK08163 77 MMDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGD 156 (396)
T ss_pred EEeCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecC
Confidence 0 000000 0 0011112223 4899999999998865543 455677889999
Q ss_pred eEEEccCCCccc
Q 013890 117 ILVIATGSTVLR 128 (434)
Q Consensus 117 ~lilAtG~~~~~ 128 (434)
.+|.|.|.....
T Consensus 157 ~vV~AdG~~S~~ 168 (396)
T PRK08163 157 ALIGCDGVKSVV 168 (396)
T ss_pred EEEECCCcChHH
Confidence 999999987544
No 188
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.61 E-value=1.2e-06 Score=87.40 Aligned_cols=64 Identities=19% Similarity=0.196 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe--CCC--cEEEcCEEEEccC-CccChhhh
Q 013890 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL--KDG--RTLEADIVVVGVG-GRPLISLF 268 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~--~~g--~~i~~d~vv~a~G-~~p~~~~~ 268 (434)
...+.+.+.+.+++.||++++++.++++.. +++++..+.. .++ .++.++.||+|+| +..|.+++
T Consensus 189 g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~-~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~ 257 (506)
T PRK06481 189 GGYLVDGLLKNVQERKIPLFVNADVTKITE-KDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMI 257 (506)
T ss_pred hHHHHHHHHHHHHHcCCeEEeCCeeEEEEe-cCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHH
Confidence 356777888888999999999999999986 4677766655 343 3688999999998 77665544
No 189
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.60 E-value=5.7e-07 Score=74.68 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=29.3
Q ss_pred EEECCCHHHHHHHHHHHHcC--CCCCcEEEEeCCCC
Q 013890 9 VILGGGVSAGYAAREFAKQG--VKPGELAIISKEAV 42 (434)
Q Consensus 9 vIIG~G~aGl~aA~~l~~~g--~~~~~V~vie~~~~ 42 (434)
+|||+|++|++++.+|.++. .+..+|+|||+++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 59999999999999999984 34568999999765
No 190
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.60 E-value=2.3e-06 Score=84.42 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc-----EEEcCEEEEccCC
Q 013890 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGR-----TLEADIVVVGVGG 261 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~-----~i~~d~vv~a~G~ 261 (434)
...+.+.+.+.+++.|+++++++.|++|...+++++.++.+.+|+ ++.+|.||+|+..
T Consensus 212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 212 PERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred hHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 355778888888899999999999999986556777778887665 7999999999874
No 191
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.60 E-value=1.8e-07 Score=91.21 Aligned_cols=37 Identities=22% Similarity=0.486 Sum_probs=33.8
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
..+||+|||||+||+++|..|+++|++ |+|+|+.+..
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~---v~v~E~~~~~ 53 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLR---IALIEAQPAE 53 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCE---EEEEecCCcc
Confidence 468999999999999999999999987 9999998753
No 192
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.59 E-value=1.8e-07 Score=90.44 Aligned_cols=122 Identities=22% Similarity=0.291 Sum_probs=71.5
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCC-------ccc---cccCCCCC------C---CCCC
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA-------LSK---AYLFPEGT------A---RLPG 65 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~-------~~~---~~~~~~~~------~---~~~~ 65 (434)
.+||+|||||++|+++|+.|++.|++ |+|+|+.+........ ++. ..+..... . ....
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ 81 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLR---VALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYD 81 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCe---EEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceE
Confidence 58999999999999999999999987 9999999763210000 000 00000000 0 0000
Q ss_pred cce--------ecC-----CC----------CCCCCHhHHHHCC-cEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEE
Q 013890 66 FHV--------CVG-----SG----------GERLLPEWYKEKG-IELILSTEIVRADIASK--TLLSATGLIFKYQILV 119 (434)
Q Consensus 66 ~~~--------~~~-----~~----------~~~~~~~~~~~~~-v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~li 119 (434)
+.. ... .. ....+.+.+++.+ ++++ ++.+..+..+++ .+++.++.++.+|.+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI 160 (388)
T PRK07608 82 MRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVV 160 (388)
T ss_pred EEEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEE
Confidence 000 000 00 0001112234455 8888 778888875554 3556677789999999
Q ss_pred EccCCCccccc
Q 013890 120 IATGSTVLRLT 130 (434)
Q Consensus 120 lAtG~~~~~p~ 130 (434)
.|+|.......
T Consensus 161 ~adG~~S~vr~ 171 (388)
T PRK07608 161 GADGAHSWVRS 171 (388)
T ss_pred EeCCCCchHHH
Confidence 99998654433
No 193
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.59 E-value=1.5e-07 Score=91.18 Aligned_cols=46 Identities=17% Similarity=0.209 Sum_probs=35.6
Q ss_pred CCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCccccc
Q 013890 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLT 130 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~p~ 130 (434)
.+++++.++.++++..+++ .+++.++..+.+|.+|.|.|.......
T Consensus 126 ~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~ 173 (395)
T PRK05732 126 PGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSALRE 173 (395)
T ss_pred CCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChhhHH
Confidence 4789999999999876554 355667778999999999998764433
No 194
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.58 E-value=2.1e-07 Score=93.87 Aligned_cols=36 Identities=22% Similarity=0.382 Sum_probs=33.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
..+||+||||||+|+++|..|+++|++ |+|||+.+.
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~---v~viE~~~~ 57 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVP---VVLLDDDDT 57 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCc---EEEEeCCCC
Confidence 468999999999999999999999987 999999974
No 195
>PLN02697 lycopene epsilon cyclase
Probab=98.58 E-value=1.7e-07 Score=92.71 Aligned_cols=116 Identities=19% Similarity=0.270 Sum_probs=67.8
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCC-ccccccCCCC-----CCCCCCcceec--------
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA-LSKAYLFPEG-----TARLPGFHVCV-------- 70 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~-------- 70 (434)
.+||+||||||||+++|..|++.|++ |+|||+... +..+. .....+.... ....+......
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~---V~LIe~~~p--~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~ 182 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLN---VGLIGPDLP--FTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMI 182 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCc---EEEecCccc--CCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeec
Confidence 58999999999999999999999987 999998632 22110 1000000000 00000000000
Q ss_pred CCC----CC----CCCHhHHHHCCcEEEcCCeEEEEeCCCCE---EEcCCCcEEEeceEEEccCCCc
Q 013890 71 GSG----GE----RLLPEWYKEKGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGSTV 126 (434)
Q Consensus 71 ~~~----~~----~~~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~lilAtG~~~ 126 (434)
+.. .. ..+.+.+.+.|++++ +..|+.+..+.+. +...++.++.++.||.|+|...
T Consensus 183 ~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~-~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 183 GRAYGRVSRTLLHEELLRRCVESGVSYL-SSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred cCcccEEcHHHHHHHHHHHHHhcCCEEE-eeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 000 00 111222344689884 4588888754432 3456778899999999999866
No 196
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.57 E-value=1.2e-07 Score=84.76 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEe-cCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTT-NADGEVNEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~-~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~ 264 (434)
.....+.++..+++.|+.|+.+..+..++. ++++....|.+.+|..+.++.+|+++|-.-+
T Consensus 152 a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~ 213 (399)
T KOG2820|consen 152 AAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWIN 213 (399)
T ss_pred HHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHH
Confidence 456778889999999999999999988862 3456778899999998999999999995443
No 197
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.57 E-value=2.4e-06 Score=82.57 Aligned_cols=57 Identities=23% Similarity=0.282 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHcC-cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890 204 TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~g-V~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p 263 (434)
+..+.+.+.+.+++.| ..+..++.+..+... . ....|.+.+|+ +.+|.||+|+|...
T Consensus 155 p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~-i~a~~vv~a~G~~~ 212 (387)
T COG0665 155 PRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGT-IEADKVVLAAGAWA 212 (387)
T ss_pred HHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCcc-EEeCEEEEcCchHH
Confidence 4578888888999999 455668888888763 2 55788888886 99999999999543
No 198
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.57 E-value=2.7e-06 Score=71.76 Aligned_cols=174 Identities=18% Similarity=0.178 Sum_probs=111.9
Q ss_pred HHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc------cC-------------------------
Q 013890 156 EAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------FT------------------------- 204 (434)
Q Consensus 156 ~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~------~~------------------------- 204 (434)
+.+.++....++|+|+|++|+-+|..|++.|.+|.++++.-.+...+ |+
T Consensus 23 ~~l~~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g 102 (262)
T COG1635 23 EDLLDYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDG 102 (262)
T ss_pred HHHHhhhhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCc
Confidence 33334456789999999999999999999999999999875543221 11
Q ss_pred ------HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC-----------CCcEEEcCEEEEccCCccChh-
Q 013890 205 ------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK-----------DGRTLEADIVVVGVGGRPLIS- 266 (434)
Q Consensus 205 ------~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~-----------~g~~i~~d~vv~a~G~~p~~~- 266 (434)
.+....+....-+.|.+++....++.+...++.++.++.++ |.-.++++.||-|||.....-
T Consensus 103 ~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~ 182 (262)
T COG1635 103 YYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVS 182 (262)
T ss_pred eEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHH
Confidence 13334444455677899999999999876344367777654 334789999999999766543
Q ss_pred hh-hcc----ccc-cCCc--------EEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhcc
Q 013890 267 LF-KGQ----VAE-NKGG--------IETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 267 ~~-~~~----~~~-~~g~--------i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 332 (434)
++ +.. ... ..+. +.|+.+.+. .||+|++|=.+..-. |.++--+...-=...|+.||+.|+.+
T Consensus 183 ~~~kr~~~l~~~~~Ge~~mw~e~~E~lvV~~T~eV-~pgL~vaGMa~~av~---G~pRMGPiFGgMllSGkkaAe~i~e~ 258 (262)
T COG1635 183 FLAKRIPELGIEVPGEKSMWAERGEDLVVENTGEV-YPGLYVAGMAVNAVH---GLPRMGPIFGGMLLSGKKAAEEILEK 258 (262)
T ss_pred HHHHhccccccccCCCcchhhhHHHHHHHhccccc-cCCeEeehhhHHhhc---CCcccCchhhhhhhchHHHHHHHHHH
Confidence 22 111 111 1122 334444444 899999997775322 22221133333346788888887765
Q ss_pred C
Q 013890 333 E 333 (434)
Q Consensus 333 ~ 333 (434)
+
T Consensus 259 L 259 (262)
T COG1635 259 L 259 (262)
T ss_pred h
Confidence 4
No 199
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.55 E-value=2.5e-06 Score=85.41 Aligned_cols=101 Identities=24% Similarity=0.244 Sum_probs=81.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC--cc-----------CCcccCHHHHHHHHHHHHHcCcEEEcCCeEE
Q 013890 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP--WC-----------MPRLFTADIAAFYEGYYANKGIKIIKGTVAV 229 (434)
Q Consensus 163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~--~~-----------~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~ 229 (434)
...++|||+|+.|+.+|..+++.|.+|+++.+.. .+ .+.....++.+.+.+.+++.|++++.++.+.
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~ 290 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS 290 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 4589999999999999999999999999986531 11 0111346788899999999999999999999
Q ss_pred EEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccCh
Q 013890 230 GFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 230 ~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~ 265 (434)
++...+ ....+.+.+|+++.+|.+|+|+|.+|..
T Consensus 291 ~I~~~~--~~~~V~~~~g~~i~a~~vViAtG~~~r~ 324 (517)
T PRK15317 291 KLEPAA--GLIEVELANGAVLKAKTVILATGARWRN 324 (517)
T ss_pred EEEecC--CeEEEEECCCCEEEcCEEEECCCCCcCC
Confidence 998732 3356777888899999999999987753
No 200
>PRK11445 putative oxidoreductase; Provisional
Probab=98.55 E-value=2.4e-07 Score=88.00 Aligned_cols=119 Identities=18% Similarity=0.269 Sum_probs=68.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCC---ccc---------cccCCCCC-CC---CCCc
Q 013890 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPA---LSK---------AYLFPEGT-AR---LPGF 66 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~---~~~---------~~~~~~~~-~~---~~~~ 66 (434)
|||+||||||||+++|..|++. ++ |+|+|+.+... +..++ ++. ++..+... .. ....
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~---V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~ 77 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MK---VIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVK 77 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CC---EEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceee
Confidence 7999999999999999999997 76 99999986421 11110 110 00000000 00 0000
Q ss_pred ceecCC--------C----CCCCCHhHH---HHCCcEEEcCCeEEEEeCCCCE--EEc-CCCc--EEEeceEEEccCCCc
Q 013890 67 HVCVGS--------G----GERLLPEWY---KEKGIELILSTEIVRADIASKT--LLS-ATGL--IFKYQILVIATGSTV 126 (434)
Q Consensus 67 ~~~~~~--------~----~~~~~~~~~---~~~~v~~~~~~~v~~i~~~~~~--v~~-~~~~--~~~~d~lilAtG~~~ 126 (434)
...... . ....+.+++ ...+++++.++.+..+..+++. +.. .++. ++.+|.+|.|+|...
T Consensus 78 ~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S 157 (351)
T PRK11445 78 TIDLANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANS 157 (351)
T ss_pred EecccccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCc
Confidence 000000 0 001111222 2357899999889888765543 333 3553 689999999999876
Q ss_pred cc
Q 013890 127 LR 128 (434)
Q Consensus 127 ~~ 128 (434)
..
T Consensus 158 ~v 159 (351)
T PRK11445 158 MV 159 (351)
T ss_pred HH
Confidence 44
No 201
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.54 E-value=4.3e-07 Score=91.43 Aligned_cols=123 Identities=15% Similarity=0.181 Sum_probs=72.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-CCCC-Ccc-------------cc------------ccC
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-YERP-ALS-------------KA------------YLF 56 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~-~~~~-~~~-------------~~------------~~~ 56 (434)
..+||+|||||++|+++|..|+++|++ |+|+|+..... ..+. .+. .. ++.
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~---v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~ 85 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVR---VLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLD 85 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEc
Confidence 368999999999999999999999987 99999997521 1110 000 00 000
Q ss_pred CCCCCCCCCcce----ecCCCC-CC----CCHhH----HHH-CCcEEEcCCeEEEEeCCCCEE--EcC--CC--cEEEec
Q 013890 57 PEGTARLPGFHV----CVGSGG-ER----LLPEW----YKE-KGIELILSTEIVRADIASKTL--LSA--TG--LIFKYQ 116 (434)
Q Consensus 57 ~~~~~~~~~~~~----~~~~~~-~~----~~~~~----~~~-~~v~~~~~~~v~~i~~~~~~v--~~~--~~--~~~~~d 116 (434)
... ..+..+.. ..+... .. .+.+. +.+ .+++++.+++++.+..+...+ ++. +| .++++|
T Consensus 86 ~~g-~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad 164 (538)
T PRK06183 86 AKG-RCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRAR 164 (538)
T ss_pred CCC-CEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEE
Confidence 000 00000000 000000 00 11112 223 489999999999998766543 333 45 479999
Q ss_pred eEEEccCCCccccc
Q 013890 117 ILVIATGSTVLRLT 130 (434)
Q Consensus 117 ~lilAtG~~~~~p~ 130 (434)
.||.|.|.+.....
T Consensus 165 ~vVgADG~~S~vR~ 178 (538)
T PRK06183 165 YVVGCDGANSFVRR 178 (538)
T ss_pred EEEecCCCchhHHH
Confidence 99999998765443
No 202
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.53 E-value=1.5e-06 Score=86.75 Aligned_cols=102 Identities=24% Similarity=0.238 Sum_probs=81.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC--CccC-----------CcccCHHHHHHHHHHHHHcCcEEEcCCeE
Q 013890 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE--PWCM-----------PRLFTADIAAFYEGYYANKGIKIIKGTVA 228 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~--~~~~-----------~~~~~~~~~~~~~~~l~~~gV~~~~~~~v 228 (434)
...+++|||+|+.|+.+|..+++.|.+|+++... ..+. +....+++.+.+.+.+++.|++++.+++|
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V 290 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRA 290 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEE
Confidence 4578999999999999999999999999998632 1110 11134677888888999999999999999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccCh
Q 013890 229 VGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 229 ~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~ 265 (434)
.++...+ ....+.+++|+.+.+|.+|+|+|.+|..
T Consensus 291 ~~I~~~~--~~~~v~~~~g~~i~~d~lIlAtGa~~~~ 325 (515)
T TIGR03140 291 KKIETED--GLIVVTLESGEVLKAKSVIVATGARWRK 325 (515)
T ss_pred EEEEecC--CeEEEEECCCCEEEeCEEEECCCCCcCC
Confidence 9997632 2346777888889999999999988643
No 203
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.53 E-value=9.5e-07 Score=77.02 Aligned_cols=98 Identities=29% Similarity=0.402 Sum_probs=68.1
Q ss_pred EEECCCHHHHHHHHHHHHCCCe-EEEEeeCCccCC--------------cc----------------------------c
Q 013890 167 VVVGGGYIGLELSAALKINNID-VSMVYPEPWCMP--------------RL----------------------------F 203 (434)
Q Consensus 167 vVvG~g~~g~e~a~~l~~~g~~-v~~~~~~~~~~~--------------~~----------------------------~ 203 (434)
+|||+|+.|+-+|..|.+.|.+ ++++++.+.+.. .. .
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999999 999998743210 00 0
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC--ccChh
Q 013890 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG--RPLIS 266 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~--~p~~~ 266 (434)
.+++.+.+.+..++.+++++++++|++++.++++ ..|++++++++.||.||+|+|. .|...
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~~~~~~a~~VVlAtG~~~~p~~p 143 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRDGRTIRADRVVLATGHYSHPRIP 143 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEETTS-EEEEEEEEE---SSCSB---
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEecceeeeeeEEEeeeccCCCCcc
Confidence 1245678888889999999999999999985555 7899999988999999999996 55443
No 204
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.53 E-value=1.7e-07 Score=79.32 Aligned_cols=36 Identities=31% Similarity=0.469 Sum_probs=30.3
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
.+||+||||||+||+||++|++.|++ |++||++..+
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~k---V~v~E~~~~~ 52 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLK---VAVIERKLSP 52 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS----EEEEESSSS-
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCe---EEEEecCCCC
Confidence 58999999999999999999999998 9999999764
No 205
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.53 E-value=4.9e-07 Score=88.36 Aligned_cols=36 Identities=25% Similarity=0.536 Sum_probs=33.1
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.++||+||||||||++||+.|+++|++ |+|+|+...
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~---VlllEr~~~ 73 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIE---TFLIERKLD 73 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCC
Confidence 469999999999999999999999997 999999853
No 206
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.51 E-value=2.6e-07 Score=89.21 Aligned_cols=32 Identities=25% Similarity=0.616 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013890 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~ 40 (434)
|||+||||||||+++|+.|++.|++ |+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~---V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIE---TILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCc---EEEEECC
Confidence 7999999999999999999999987 9999998
No 207
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.51 E-value=8.3e-07 Score=85.85 Aligned_cols=99 Identities=14% Similarity=0.275 Sum_probs=73.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC--eEEEEeeCCccCC--cccCHHHH---------HHHHHHHHHcCcEEEcCCeEE
Q 013890 163 NGKAVVVGGGYIGLELSAALKINNI--DVSMVYPEPWCMP--RLFTADIA---------AFYEGYYANKGIKIIKGTVAV 229 (434)
Q Consensus 163 ~~~vvVvG~g~~g~e~a~~l~~~g~--~v~~~~~~~~~~~--~~~~~~~~---------~~~~~~l~~~gV~~~~~~~v~ 229 (434)
.++++|||+|+.|+.+|..|++.+. +|+++.+.+.+.- ..+...+. ..-.+.+.+.||+++.++.|.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~ 82 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK 82 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence 5789999999999999999999876 6899987654211 01222111 001344677899999999999
Q ss_pred EEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccCh
Q 013890 230 GFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 230 ~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~ 265 (434)
.++. +. ..+.+++|+++.+|.+|+|||.+|..
T Consensus 83 ~id~--~~--~~v~~~~g~~~~yd~LViATGs~~~~ 114 (396)
T PRK09754 83 TLGR--DT--RELVLTNGESWHWDQLFIATGAAARP 114 (396)
T ss_pred EEEC--CC--CEEEECCCCEEEcCEEEEccCCCCCC
Confidence 9976 33 24677888899999999999998854
No 208
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.51 E-value=1.1e-07 Score=92.78 Aligned_cols=115 Identities=21% Similarity=0.209 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCC----------------CCCCC------C
Q 013890 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPE----------------GTARL------P 64 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~----------------~~~~~------~ 64 (434)
||||||||+||++||..+++.|.+ |+|||+.+..+.....-....+... ..... +
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~---VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~ 77 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAK---VLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQED 77 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS----EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST----------
T ss_pred CEEEECccHHHHHHHHHHHHCCCE---EEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccc
Confidence 899999999999999999999997 9999999874321100000000000 00000 0
Q ss_pred Ccc----eecC-CCCCCCCHhHHHHCCcEEEcCCeEEEEeCCCCE---EEcCC---CcEEEeceEEEccCC
Q 013890 65 GFH----VCVG-SGGERLLPEWYKEKGIELILSTEIVRADIASKT---LLSAT---GLIFKYQILVIATGS 124 (434)
Q Consensus 65 ~~~----~~~~-~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~~~~---~~~~~~d~lilAtG~ 124 (434)
... .... ......+.+++.+.|++++.++.+.++..+++. |.+.+ ..++.++.+|-|||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 78 RYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 000 0000 011224556667789999999999998887754 33433 467999999999994
No 209
>PRK07588 hypothetical protein; Provisional
Probab=98.50 E-value=7.5e-07 Score=86.13 Aligned_cols=121 Identities=15% Similarity=0.095 Sum_probs=71.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC--Cc-cc--------cc----cCCCC-CCCC-----CC
Q 013890 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP--AL-SK--------AY----LFPEG-TARL-----PG 65 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~--~~-~~--------~~----~~~~~-~~~~-----~~ 65 (434)
||+|||||++|+++|..|+++|++ |+|+|+.+...-... .+ .. ++ ..... ...+ .+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g 78 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHE---PTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTG 78 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCc---eEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCC
Confidence 899999999999999999999987 999999865211000 00 00 00 00000 0000 00
Q ss_pred cc----------eecCCCCCC----CCHhHH---HHCCcEEEcCCeEEEEeCCCCE--EEcCCCcEEEeceEEEccCCCc
Q 013890 66 FH----------VCVGSGGER----LLPEWY---KEKGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTV 126 (434)
Q Consensus 66 ~~----------~~~~~~~~~----~~~~~~---~~~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lilAtG~~~ 126 (434)
.. ...+..... .+.+.+ ...+++++.++++.+++.+.+. +.+.+++++.+|.||-|.|.+.
T Consensus 79 ~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 79 RRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred CEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 00 000000000 011111 1246899999999999876654 5567888899999999999876
Q ss_pred cccc
Q 013890 127 LRLT 130 (434)
Q Consensus 127 ~~p~ 130 (434)
....
T Consensus 159 ~vR~ 162 (391)
T PRK07588 159 HVRR 162 (391)
T ss_pred cchh
Confidence 5443
No 210
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.50 E-value=3.6e-07 Score=88.10 Aligned_cols=119 Identities=19% Similarity=0.243 Sum_probs=70.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcC-CCCCcEEEEeCCCCCCCC-----CC-Cccc---------cccCCCC--CCCCCCcce
Q 013890 7 KYVILGGGVSAGYAAREFAKQG-VKPGELAIISKEAVAPYE-----RP-ALSK---------AYLFPEG--TARLPGFHV 68 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g-~~~~~V~vie~~~~~~~~-----~~-~~~~---------~~~~~~~--~~~~~~~~~ 68 (434)
||+|||||++|+++|..|+++| ++ |+|+|+.+..... +. .++. +++.... ......+..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~---v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~ 77 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIK---IALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHV 77 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCce---EEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEE
Confidence 7999999999999999999999 87 9999998653221 00 0000 0000000 000000000
Q ss_pred e---------c-----CCCC------CCCCHh----HHHH-CCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEc
Q 013890 69 C---------V-----GSGG------ERLLPE----WYKE-KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIA 121 (434)
Q Consensus 69 ~---------~-----~~~~------~~~~~~----~~~~-~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilA 121 (434)
. . +... ...+.+ .+.+ .+++++.++.++++..+.. ++.+.++.++.+|.||.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~A 157 (382)
T TIGR01984 78 SDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAA 157 (382)
T ss_pred EcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEe
Confidence 0 0 0000 001111 2233 4899999999999876554 355667788999999999
Q ss_pred cCCCccc
Q 013890 122 TGSTVLR 128 (434)
Q Consensus 122 tG~~~~~ 128 (434)
.|.....
T Consensus 158 dG~~S~v 164 (382)
T TIGR01984 158 DGANSKV 164 (382)
T ss_pred cCCChHH
Confidence 9976543
No 211
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.50 E-value=2.9e-07 Score=66.93 Aligned_cols=78 Identities=18% Similarity=0.373 Sum_probs=57.7
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHCC
Q 013890 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 86 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (434)
+++|||||+.|+-+|..|++.|.+ |+++++.+.+. . .. .... .....+++++.|
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~---vtli~~~~~~~-~--~~---------~~~~-----------~~~~~~~l~~~g 54 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKE---VTLIERSDRLL-P--GF---------DPDA-----------AKILEEYLRKRG 54 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSE---EEEEESSSSSS-T--TS---------SHHH-----------HHHHHHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHHhCcE---EEEEeccchhh-h--hc---------CHHH-----------HHHHHHHHHHCC
Confidence 489999999999999999999876 99999997532 0 00 0000 134567888899
Q ss_pred cEEEcCCeEEEEeCCCCE--EEcCCC
Q 013890 87 IELILSTEIVRADIASKT--LLSATG 110 (434)
Q Consensus 87 v~~~~~~~v~~i~~~~~~--v~~~~~ 110 (434)
++++.++.+.++..++.. |++.||
T Consensus 55 V~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 55 VEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp EEEEESEEEEEEEEETTSEEEEEETS
T ss_pred CEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 999999999999876643 555443
No 212
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.50 E-value=5.2e-07 Score=90.59 Aligned_cols=59 Identities=19% Similarity=0.210 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC---CC--cEEEcCEEEEccCCcc
Q 013890 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK---DG--RTLEADIVVVGVGGRP 263 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~---~g--~~i~~d~vv~a~G~~p 263 (434)
+..+...+....+++|++++++++|+++.. +++.+.+|.+. ++ .++.++.||.|+|...
T Consensus 148 p~rl~~al~~~A~~~Ga~i~~~t~V~~i~~-~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 148 PFRLTAANMLDAKEHGAQILTYHEVTGLIR-EGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred HHHHHHHHHHHHHhCCCEEEeccEEEEEEE-cCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 456777777788899999999999999987 34566666652 23 3789999999999643
No 213
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.50 E-value=4.5e-07 Score=87.51 Aligned_cols=119 Identities=24% Similarity=0.289 Sum_probs=71.1
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC------CC-Cccc---------cccCCCC---CCCCCCcc
Q 013890 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE------RP-ALSK---------AYLFPEG---TARLPGFH 67 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~------~~-~~~~---------~~~~~~~---~~~~~~~~ 67 (434)
||+|||||++|+++|..|+++|++ |+|+|+.+..... +. .++. +++.... ......+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~---v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 77 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLK---IALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIH 77 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCE---EEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEE
Confidence 799999999999999999999987 9999999753211 10 0000 0000000 00000000
Q ss_pred ee---------cCC-----CC----------CCCCHhHHHHCC-cEEEcCCeEEEEeCCCCE--EEcCCCcEEEeceEEE
Q 013890 68 VC---------VGS-----GG----------ERLLPEWYKEKG-IELILSTEIVRADIASKT--LLSATGLIFKYQILVI 120 (434)
Q Consensus 68 ~~---------~~~-----~~----------~~~~~~~~~~~~-v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lil 120 (434)
.. ... .. ...+.+.+.+.+ ++++.++.|+.++...+. +...++.++.+|.+|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~ 157 (385)
T TIGR01988 78 VSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVG 157 (385)
T ss_pred EEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEE
Confidence 00 000 00 001112223445 899999999999866654 4557788899999999
Q ss_pred ccCCCccc
Q 013890 121 ATGSTVLR 128 (434)
Q Consensus 121 AtG~~~~~ 128 (434)
|.|.....
T Consensus 158 adG~~S~v 165 (385)
T TIGR01988 158 ADGANSKV 165 (385)
T ss_pred eCCCCCHH
Confidence 99976543
No 214
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.50 E-value=4.2e-06 Score=81.96 Aligned_cols=134 Identities=19% Similarity=0.220 Sum_probs=90.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc---------------------------------------
Q 013890 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL--------------------------------------- 202 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~--------------------------------------- 202 (434)
..++|+|||+|++|+-+|..|.+.|.+|+++++.+.+...+
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 36899999999999999999999999999998764221100
Q ss_pred ------------------c--CHHHHHHHHHHHHHcCcE--EEcCCeEEEEEecCCCcEEEEEeCCC--c--EEEcCEEE
Q 013890 203 ------------------F--TADIAAFYEGYYANKGIK--IIKGTVAVGFTTNADGEVNEVKLKDG--R--TLEADIVV 256 (434)
Q Consensus 203 ------------------~--~~~~~~~~~~~l~~~gV~--~~~~~~v~~i~~~~~g~~~~v~~~~g--~--~i~~d~vv 256 (434)
+ ..++.+.+.+..++.|+. ++++++|.+++..+ ....|.+.++ . +..+|.||
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~w~V~~~~~~~~~~~~~~d~VI 166 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GKWRVQSKNSGGFSKDEIFDAVV 166 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC--CeEEEEEEcCCCceEEEEcCEEE
Confidence 0 035777888888889998 88999999998732 2345655432 2 45789999
Q ss_pred EccC--CccChhhhhccccccCCc-EEeCCCCCC----CCCceEEecccc
Q 013890 257 VGVG--GRPLISLFKGQVAENKGG-IETDDFFKT----SADDVYAVGDVA 299 (434)
Q Consensus 257 ~a~G--~~p~~~~~~~~~~~~~g~-i~vd~~~~t----~~~~iya~Gd~~ 299 (434)
+|+| ..|+..-+. ++..-.|. +... .++. ...+|-++|-..
T Consensus 167 vAtG~~~~P~~P~ip-G~~~f~G~~iHs~-~yr~~~~~~gk~VvVVG~G~ 214 (461)
T PLN02172 167 VCNGHYTEPNVAHIP-GIKSWPGKQIHSH-NYRVPDPFKNEVVVVIGNFA 214 (461)
T ss_pred EeccCCCCCcCCCCC-CcccCCceEEEec-ccCCccccCCCEEEEECCCc
Confidence 9999 456544332 22211232 3332 2332 356788887544
No 215
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.48 E-value=1.3e-06 Score=83.31 Aligned_cols=113 Identities=16% Similarity=0.206 Sum_probs=66.8
Q ss_pred cEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEeCCCCCCCCCCCccccccCCC------------CCCCCCCcceecCC
Q 013890 7 KYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAVAPYERPALSKAYLFPE------------GTARLPGFHVCVGS 72 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~--g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ 72 (434)
||+|||||+||+++|..|++. |++ |+|+|+.+...-.+.. .++... .....+.+......
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~---V~lle~~~~~~~~~tw---~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~ 74 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFR---IRVIEAGRTIGGNHTW---SFFDSDLSDAQHAWLADLVQTDWPGYEVRFPK 74 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCe---EEEEeCCCCCCCcccc---eecccccchhhhhhhhhhheEeCCCCEEECcc
Confidence 799999999999999999987 666 9999998743322111 011000 00011111111100
Q ss_pred C------CC-----CCCHhH-HHHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcc
Q 013890 73 G------GE-----RLLPEW-YKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL 127 (434)
Q Consensus 73 ~------~~-----~~~~~~-~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~ 127 (434)
. .+ ..+.+. ++..+..++.+..|..++. +.+++.+++++.++.||-|.|..+.
T Consensus 75 ~~~~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~--~~v~l~dg~~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 75 YRRKLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDA--DGVDLAPGTRINARSVIDCRGFKPS 139 (370)
T ss_pred hhhhcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEEeC--CEEEECCCCEEEeeEEEECCCCCCC
Confidence 0 00 011122 2222444666778888854 3466688899999999999997753
No 216
>PRK06753 hypothetical protein; Provisional
Probab=98.48 E-value=1.3e-06 Score=83.83 Aligned_cols=119 Identities=17% Similarity=0.190 Sum_probs=69.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCC--ccc---------cccCC--CCCCCCCCccee--cC
Q 013890 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA--LSK---------AYLFP--EGTARLPGFHVC--VG 71 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~--~~~---------~~~~~--~~~~~~~~~~~~--~~ 71 (434)
||+|||||++|+++|..|++.|++ |+|+|+.+........ +.. +++.. ........+... .+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~---v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g 78 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHE---VKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKG 78 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCC
Confidence 799999999999999999999987 9999999753211000 000 00000 000000000000 00
Q ss_pred C-----------CC----CCCCHhHHHH--CCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCccc
Q 013890 72 S-----------GG----ERLLPEWYKE--KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLR 128 (434)
Q Consensus 72 ~-----------~~----~~~~~~~~~~--~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~ 128 (434)
. .. ...+.+.+.+ .+.+++.++.+++++.+++ ++++.++.++.+|.||-|.|.+...
T Consensus 79 ~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~v 154 (373)
T PRK06753 79 TLLNKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKV 154 (373)
T ss_pred CEEeecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchHH
Confidence 0 00 0011222222 2457888999999986655 3566788889999999999976543
No 217
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.48 E-value=1e-06 Score=87.81 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-----cEEEcCEEEEccCCc
Q 013890 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG-----RTLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g-----~~i~~d~vv~a~G~~ 262 (434)
-..+.+.+.+.+++.|++++++++|++|..+ ++++..+.+.++ +++.+|.||+++...
T Consensus 231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHHHhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence 3568888999999999999999999999873 455455666554 578999999998853
No 218
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.47 E-value=1.7e-06 Score=84.52 Aligned_cols=60 Identities=23% Similarity=0.298 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC---CCc--EEEcCEEEEccCCccC
Q 013890 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK---DGR--TLEADIVVVGVGGRPL 264 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~---~g~--~i~~d~vv~a~G~~p~ 264 (434)
...+.+.+.+.++++||++++++.++++.. +++++.++... +|+ .+.++.||+|+|--..
T Consensus 140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~-e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGVDIRFNTRVTDLIT-EDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESEEEEEEEE-ETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHHhhcCeeeeccceeeeEEE-eCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 467888899999999999999999999988 47788888776 454 5789999999995443
No 219
>PRK05868 hypothetical protein; Validated
Probab=98.47 E-value=8.9e-07 Score=84.80 Aligned_cols=120 Identities=15% Similarity=0.157 Sum_probs=71.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCc--c---------ccccCC--CCCCCCCCcce----
Q 013890 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPAL--S---------KAYLFP--EGTARLPGFHV---- 68 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~--~---------~~~~~~--~~~~~~~~~~~---- 68 (434)
.||+|||||++|+++|..|+++|++ |+|+|+.+...-....+ . -+++.. ...........
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~---v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~ 78 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYS---VTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRD 78 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCC---EEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCC
Confidence 4899999999999999999999987 99999986532100000 0 000000 00000000000
Q ss_pred -----------ecCC----CCC----CCCHhHHH---HCCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCC
Q 013890 69 -----------CVGS----GGE----RLLPEWYK---EKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGS 124 (434)
Q Consensus 69 -----------~~~~----~~~----~~~~~~~~---~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~ 124 (434)
..+. ... ..+.+.+. ..+++++.+++++.++.+.. ++++.++.++++|.||-|.|.
T Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~ 158 (372)
T PRK05868 79 GNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGL 158 (372)
T ss_pred CCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCC
Confidence 0000 000 01112222 25789999999999876554 456678889999999999997
Q ss_pred Cccc
Q 013890 125 TVLR 128 (434)
Q Consensus 125 ~~~~ 128 (434)
+...
T Consensus 159 ~S~v 162 (372)
T PRK05868 159 HSNV 162 (372)
T ss_pred CchH
Confidence 6544
No 220
>PRK07121 hypothetical protein; Validated
Probab=98.47 E-value=6.9e-06 Score=81.83 Aligned_cols=65 Identities=23% Similarity=0.205 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCC-Cc--EEEc-CEEEEccC-CccChhhh
Q 013890 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKD-GR--TLEA-DIVVVGVG-GRPLISLF 268 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~-g~--~i~~-d~vv~a~G-~~p~~~~~ 268 (434)
...+.+.+.+.+++.|+++++++.++++..++++++.+|...+ ++ .+.+ +.||+|+| +.-|.+++
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em~ 245 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAMNREMV 245 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHHH
Confidence 4567778888889999999999999999875557787776643 32 5778 99999999 44444444
No 221
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.47 E-value=1.7e-07 Score=87.87 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=62.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC-CCCCCCCCCcc-----ccccCCC------------CCCC------
Q 013890 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-AVAPYERPALS-----KAYLFPE------------GTAR------ 62 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~-~~~~~~~~~~~-----~~~~~~~------------~~~~------ 62 (434)
||+|||||.||..||+.+++.|.+ |+|+... +....-.|..+ ++.+..+ ....
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~---V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~l 77 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAK---VLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRML 77 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT-----EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCC---EEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhcc
Confidence 899999999999999999999998 9999333 22111111111 0000000 0000
Q ss_pred -----CCCcceecCCCCCCCCH----hHHHH-CCcEEEcCCeEEEEeCCCCE---EEcCCCcEEEeceEEEccCC
Q 013890 63 -----LPGFHVCVGSGGERLLP----EWYKE-KGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGS 124 (434)
Q Consensus 63 -----~~~~~~~~~~~~~~~~~----~~~~~-~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~lilAtG~ 124 (434)
.+..... ...+...+. +.+++ .+++++.. +|+++..+++. |.+.++..+.+|.+|+|||.
T Consensus 78 N~skGpav~a~r-~qvDr~~y~~~~~~~l~~~~nl~i~~~-~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 78 NRSKGPAVHALR-AQVDRDKYSRAMREKLESHPNLTIIQG-EVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp STTS-GGCTEEE-EEE-HHHHHHHHHHHHHTSTTEEEEES--EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred cccCCCCccchH-hhccHHHHHHHHHHHHhcCCCeEEEEc-ccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 0000000 000011122 22333 58999875 89999887764 56788999999999999998
No 222
>PRK07233 hypothetical protein; Provisional
Probab=98.46 E-value=1.2e-06 Score=86.04 Aligned_cols=56 Identities=21% Similarity=0.205 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~ 262 (434)
..+.+.+.+.+++.|++++++++|.+|+.+ ++.+..+ ..+++.+.+|.||+|++..
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~-~~~~~~~-~~~~~~~~ad~vI~a~p~~ 253 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVID-GGGVTGV-EVDGEEEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEEc-CCceEEE-EeCCceEECCEEEECCCHH
Confidence 467788888899999999999999999873 3444333 3566789999999999853
No 223
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.45 E-value=2.4e-07 Score=88.17 Aligned_cols=36 Identities=25% Similarity=0.451 Sum_probs=31.2
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
.+||+|||||++|+++|..|+++|++ |+|||+.+..
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~---v~i~E~~~~~ 36 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGID---VTIIERRPDP 36 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCE---EEEEESSSSC
T ss_pred CceEEEECCCHHHHHHHHHHHhcccc---cccchhcccc
Confidence 37999999999999999999999998 9999999763
No 224
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.45 E-value=8.2e-07 Score=89.94 Aligned_cols=38 Identities=26% Similarity=0.347 Sum_probs=33.6
Q ss_pred CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
||...+||||||+|.||++||+++++. .+ |+|+||...
T Consensus 1 ~~~~~~DVlVIG~G~AGl~AAl~aa~~-~~---VilleK~~~ 38 (583)
T PRK08205 1 MQQHRYDVVIVGAGGAGMRAAIEAGPR-AR---TAVLTKLYP 38 (583)
T ss_pred CcceeccEEEECccHHHHHHHHHHHhC-CC---EEEEeCCCC
Confidence 777789999999999999999999975 55 999999854
No 225
>PRK06847 hypothetical protein; Provisional
Probab=98.44 E-value=4e-06 Score=80.63 Aligned_cols=102 Identities=26% Similarity=0.341 Sum_probs=80.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCC------------------------------------------
Q 013890 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP------------------------------------------ 200 (434)
Q Consensus 163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~------------------------------------------ 200 (434)
.++|+|||+|+.|+-+|..|++.|.+|+++++.+.+..
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~ 83 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT 83 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence 56899999999999999999999999999987642100
Q ss_pred ---c----------------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 013890 201 ---R----------------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 201 ---~----------------~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~ 261 (434)
. ....++.+.+.+.+++.|+++++++.+.+++.++++ ..+.+.+|+++.+|.||.|.|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vI~AdG~ 161 (375)
T PRK06847 84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDG--VTVTFSDGTTGRYDLVVGADGL 161 (375)
T ss_pred EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE--EEEEEcCCCEEEcCEEEECcCC
Confidence 0 001345566777777889999999999999873333 4677889999999999999998
Q ss_pred ccChh
Q 013890 262 RPLIS 266 (434)
Q Consensus 262 ~p~~~ 266 (434)
.+...
T Consensus 162 ~s~~r 166 (375)
T PRK06847 162 YSKVR 166 (375)
T ss_pred Ccchh
Confidence 77664
No 226
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.44 E-value=9.5e-06 Score=80.07 Aligned_cols=59 Identities=29% Similarity=0.467 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEE---eCCC--cEEEcCEEEEccCCcc
Q 013890 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVK---LKDG--RTLEADIVVVGVGGRP 263 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~---~~~g--~~i~~d~vv~a~G~~p 263 (434)
+..+...+.+.+++.|++++++++|++++..+++.+ .+. +.+| .++.+|.||+|+|...
T Consensus 177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEECCEEEECCCcch
Confidence 467888888889999999999999999987444332 233 2334 2689999999999654
No 227
>PRK06996 hypothetical protein; Provisional
Probab=98.44 E-value=7.2e-07 Score=86.41 Aligned_cols=123 Identities=20% Similarity=0.177 Sum_probs=70.0
Q ss_pred CCCCcCcEEEECCCHHHHHHHHHHHHcCC-CCCcEEEEeCCCCCCCC---CC-Cc---------cccccCCCCCCCCCCc
Q 013890 1 MAEKSFKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKEAVAPYE---RP-AL---------SKAYLFPEGTARLPGF 66 (434)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~-~~~~V~vie~~~~~~~~---~~-~~---------~~~~~~~~~~~~~~~~ 66 (434)
|.++.+||+||||||+|+++|..|++.|. +..+|+|+|+.+..... +. .+ .-+.+.. ....+...
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~-~~~~~~~~ 85 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPA-DATPIEHI 85 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchh-cCCcccEE
Confidence 44567899999999999999999999873 11239999997532110 00 00 0000000 00000000
Q ss_pred cee--------------cCCC----------CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCE--EEcCCC---cEEEece
Q 013890 67 HVC--------------VGSG----------GERLLPEWYKEKGIELILSTEIVRADIASKT--LLSATG---LIFKYQI 117 (434)
Q Consensus 67 ~~~--------------~~~~----------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~~---~~~~~d~ 117 (434)
... .... ....+.+.+...++++..+++++.+..+... +.+.++ +++++|.
T Consensus 86 ~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~l 165 (398)
T PRK06996 86 HVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARI 165 (398)
T ss_pred EEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeE
Confidence 000 0000 0111223334568999999999888665554 444433 5899999
Q ss_pred EEEccCC
Q 013890 118 LVIATGS 124 (434)
Q Consensus 118 lilAtG~ 124 (434)
||-|.|.
T Consensus 166 vIgADG~ 172 (398)
T PRK06996 166 AVQAEGG 172 (398)
T ss_pred EEECCCC
Confidence 9999995
No 228
>PLN02661 Putative thiazole synthesis
Probab=98.43 E-value=1.1e-06 Score=81.21 Aligned_cols=36 Identities=33% Similarity=0.437 Sum_probs=31.9
Q ss_pred cCcEEEECCCHHHHHHHHHHHHc-CCCCCcEEEEeCCCCC
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKEAVA 43 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~-g~~~~~V~vie~~~~~ 43 (434)
.+||+|||||++|++||++|++. |++ |+|||+....
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~k---V~viEk~~~~ 128 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVK---VAIIEQSVSP 128 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCe---EEEEecCccc
Confidence 58999999999999999999976 666 9999998653
No 229
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.41 E-value=3.2e-07 Score=91.34 Aligned_cols=57 Identities=21% Similarity=0.179 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~ 262 (434)
..+.+.+.+.++++|++++.+++|++|.. +++++..|.+++|+++++|.||+++|..
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~g~~~~ad~vV~a~~~~ 285 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIIL-ENGKAVGVKLADGEKIYAKRIVSNATRW 285 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEe-cCCcEEEEEeCCCCEEEcCEEEECCChH
Confidence 56788899999999999999999999987 3577788999999899999999998854
No 230
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.41 E-value=2.6e-05 Score=76.66 Aligned_cols=59 Identities=20% Similarity=0.287 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHH-HcCcEEEcCCeEEEEEecCCCcEEEEE---eCCCc--EEEcCEEEEccCCccC
Q 013890 205 ADIAAFYEGYYA-NKGIKIIKGTVAVGFTTNADGEVNEVK---LKDGR--TLEADIVVVGVGGRPL 264 (434)
Q Consensus 205 ~~~~~~~~~~l~-~~gV~~~~~~~v~~i~~~~~g~~~~v~---~~~g~--~i~~d~vv~a~G~~p~ 264 (434)
..+.+.+.+.+. ..|++++++++|..+...+++.. .+. +.+++ ++.+|.||+|.|....
T Consensus 184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w-~v~v~~t~~g~~~~i~Ad~VV~AAGawS~ 248 (497)
T PRK13339 184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGW-EVTVKDRNTGEKREQVADYVFIGAGGGAI 248 (497)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCE-EEEEEecCCCceEEEEcCEEEECCCcchH
Confidence 456677777775 45999999999999986424332 333 34442 6899999999997653
No 231
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.41 E-value=6.3e-07 Score=87.00 Aligned_cols=59 Identities=24% Similarity=0.210 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc-----EEEcCEEEEccCCccC
Q 013890 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGR-----TLEADIVVVGVGGRPL 264 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~-----~i~~d~vv~a~G~~p~ 264 (434)
|..+...+.....++|-++...++|+++.. +++ +.+|+..|.. ++.++.||.|+|.-..
T Consensus 163 daRLv~~~a~~A~~~Ga~il~~~~v~~~~r-e~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d 226 (532)
T COG0578 163 DARLVAANARDAAEHGAEILTYTRVESLRR-EGG-VWGVEVEDRETGETYEIRARAVVNAAGPWVD 226 (532)
T ss_pred hHHHHHHHHHHHHhcccchhhcceeeeeee-cCC-EEEEEEEecCCCcEEEEEcCEEEECCCccHH
Confidence 567777788888999999999999999987 334 8888876542 5889999999996543
No 232
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.41 E-value=6.8e-06 Score=83.65 Aligned_cols=57 Identities=19% Similarity=0.253 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEEcCEEEEccC
Q 013890 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL---KDGR--TLEADIVVVGVG 260 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vv~a~G 260 (434)
...+...+.+.+++.||+++.++.+.++..+++|++.++.. .+|+ .+.++.||+|||
T Consensus 165 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 226 (617)
T PTZ00139 165 GHAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATG 226 (617)
T ss_pred HHHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCC
Confidence 45677788888888999999999999987545778887764 3564 578999999997
No 233
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.41 E-value=2.2e-05 Score=77.58 Aligned_cols=59 Identities=27% Similarity=0.487 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHcC-cEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEEcCEEEEccCCcc
Q 013890 204 TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVNEVKL---KDGR--TLEADIVVVGVGGRP 263 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~g-V~~~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vv~a~G~~p 263 (434)
+..+.+.+.+.+++.| ++++++++|++++.++++.+ .+.+ .+|+ ++.++.||+|.|...
T Consensus 182 ~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 182 FGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcCEEEECCCcch
Confidence 3567788888888876 89999999999987555533 2332 3453 689999999999654
No 234
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.40 E-value=1.1e-06 Score=84.93 Aligned_cols=34 Identities=21% Similarity=0.500 Sum_probs=31.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
+||+||||||||++||+.|++.|++ |+|+|+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~---V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQ---TFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCc---EEEEecCCC
Confidence 5899999999999999999999997 999999754
No 235
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.39 E-value=2.6e-06 Score=83.84 Aligned_cols=101 Identities=22% Similarity=0.358 Sum_probs=72.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CeEEEEeeCCccC------Ccc----cC--HHHHHHHHHHHHHcCcEEEcCCeEE
Q 013890 164 GKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCM------PRL----FT--ADIAAFYEGYYANKGIKIIKGTVAV 229 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g--~~v~~~~~~~~~~------~~~----~~--~~~~~~~~~~l~~~gV~~~~~~~v~ 229 (434)
++++|||+|+.|+.+|..|++++ .+|+++++.+.+. +.. ++ .++.....+.+++.||+++.++.|.
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 80 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV 80 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence 37999999999999999999876 4899999887531 110 11 1233334566788899999999999
Q ss_pred EEEecCCCcEEEEEe-CCCcEEE--cCEEEEccCCccChh
Q 013890 230 GFTTNADGEVNEVKL-KDGRTLE--ADIVVVGVGGRPLIS 266 (434)
Q Consensus 230 ~i~~~~~g~~~~v~~-~~g~~i~--~d~vv~a~G~~p~~~ 266 (434)
+++. +++...+.. .+++++. +|.+|+|||.+|...
T Consensus 81 ~id~--~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 118 (444)
T PRK09564 81 KVDA--KNKTITVKNLKTGSIFNDTYDKLMIATGARPIIP 118 (444)
T ss_pred EEEC--CCCEEEEEECCCCCEEEecCCEEEECCCCCCCCC
Confidence 9986 333333332 2355666 999999999998654
No 236
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.39 E-value=1.7e-06 Score=84.75 Aligned_cols=99 Identities=18% Similarity=0.288 Sum_probs=74.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHC
Q 013890 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
.+|+|||+|++|+.+|..|++.|.+ |+++++.+.... + .+ ...+ .....+.+++.
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~~~--~-----~~----~~~~-----------~~~~~~~l~~~ 192 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKN---VTLIHRSERILN--K-----LF----DEEM-----------NQIVEEELKKH 192 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCc---EEEEECCcccCc--c-----cc----CHHH-----------HHHHHHHHHHc
Confidence 6899999999999999999998876 999998754210 0 00 0000 12345667788
Q ss_pred CcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccc
Q 013890 86 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p 129 (434)
|++++.++.+..++.+...+.+.+++++.+|.+|+|+|.+|..+
T Consensus 193 gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 236 (427)
T TIGR03385 193 EINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNSE 236 (427)
T ss_pred CCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCCHH
Confidence 99999999999998766544566788899999999999988643
No 237
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.37 E-value=8.8e-07 Score=85.03 Aligned_cols=33 Identities=36% Similarity=0.535 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
+||+|||||++|+++|..|++.|++ |+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~---v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIK---TTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCe---EEEecCCC
Confidence 7999999999999999999999997 99999863
No 238
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.37 E-value=2.2e-06 Score=84.04 Aligned_cols=46 Identities=13% Similarity=0.221 Sum_probs=35.9
Q ss_pred CcEEEcCCeEEEEeCC---------CCEEEcCCCcEEEeceEEEccCCCcccccC
Q 013890 86 GIELILSTEIVRADIA---------SKTLLSATGLIFKYQILVIATGSTVLRLTD 131 (434)
Q Consensus 86 ~v~~~~~~~v~~i~~~---------~~~v~~~~~~~~~~d~lilAtG~~~~~p~~ 131 (434)
+++++.++++..+... .-++.+.+++++++|.||-|.|........
T Consensus 134 ~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~ 188 (437)
T TIGR01989 134 NVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVRKA 188 (437)
T ss_pred CeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhHHH
Confidence 4899999999998632 125667788899999999999987655443
No 239
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.37 E-value=1.4e-06 Score=88.86 Aligned_cols=35 Identities=29% Similarity=0.491 Sum_probs=32.5
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.+||||||+|.||++||..+++.|.+ |+||||...
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~---V~lieK~~~ 42 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLR---VAVVCKSLF 42 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCC---EEEEeccCC
Confidence 58999999999999999999999887 999999864
No 240
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.35 E-value=1.6e-05 Score=78.47 Aligned_cols=59 Identities=15% Similarity=0.145 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecC--CC--cEEEEEeCCC---cEEEcCEEEEccCCc
Q 013890 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNA--DG--EVNEVKLKDG---RTLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~--~g--~~~~v~~~~g---~~i~~d~vv~a~G~~ 262 (434)
..-+.+.+.+.+++.|++++++++|++|..++ ++ .++++.+.+| +++.+|.||+|++..
T Consensus 218 ~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~ 283 (474)
T TIGR02732 218 DKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVP 283 (474)
T ss_pred chhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChH
Confidence 34456778888899999999999999998633 23 2666667544 468999999999953
No 241
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.35 E-value=5.1e-06 Score=78.16 Aligned_cols=95 Identities=24% Similarity=0.291 Sum_probs=69.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEe-eCCccCCc------------------------------------------
Q 013890 165 KAVVVGGGYIGLELSAALKINNIDVSMVY-PEPWCMPR------------------------------------------ 201 (434)
Q Consensus 165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~-~~~~~~~~------------------------------------------ 201 (434)
.|+|||+|..|+|+|..+++.|.+|.++. ..+.+...
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 37999999999999999999999999993 32222100
Q ss_pred ----------ccCH-HHHHHHHHHHHH-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 013890 202 ----------LFTA-DIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 202 ----------~~~~-~~~~~~~~~l~~-~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~ 261 (434)
..|. ...+.+++.+++ .+++++ ..+|+++.. +++++.+|.+.+|+++.+|.||+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 0111 344556666766 688887 568999987 578999999999999999999999998
No 242
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.34 E-value=1.6e-06 Score=75.47 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=31.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.+|+|||+|+||++||..|++.|.+ |+|+||..-
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~---vtV~eKg~G 35 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGRE---VTVFEKGRG 35 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcE---EEEEEcCCC
Confidence 4799999999999999999999987 999999975
No 243
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.34 E-value=2.5e-06 Score=84.10 Aligned_cols=99 Identities=16% Similarity=0.240 Sum_probs=72.9
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||++|+.+|..+++.|.+ |+++++.+.... ... +.+ .....+.+++
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~---Vtli~~~~~ll~------------~~d---~e~--------~~~l~~~L~~ 223 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTK---VTIVEMAPQLLP------------GED---EDI--------AHILREKLEN 223 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCcCc------------ccc---HHH--------HHHHHHHHHH
Confidence 36899999999999999999998876 999998854210 000 000 1234566778
Q ss_pred CCcEEEcCCeEEEEeCCCCEEEcC-CC--cEEEeceEEEccCCCcccc
Q 013890 85 KGIELILSTEIVRADIASKTLLSA-TG--LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~-~~--~~~~~d~lilAtG~~~~~p 129 (434)
.|++++.++.+..++.+...+.+. ++ .++.+|.+++|+|..|...
T Consensus 224 ~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~ 271 (458)
T PRK06912 224 DGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQ 271 (458)
T ss_pred CCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCC
Confidence 899999999999998766554432 33 3689999999999998754
No 244
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.33 E-value=1.5e-05 Score=78.87 Aligned_cols=36 Identities=31% Similarity=0.409 Sum_probs=32.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHc----CCCCCcEEEEeCCCCCC
Q 013890 6 FKYVILGGGVSAGYAAREFAKQ----GVKPGELAIISKEAVAP 44 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~----g~~~~~V~vie~~~~~~ 44 (434)
+||+|||||++||+||+.|+++ |.+ |+|+|+++..+
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~---v~vlE~~~r~G 42 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVE---LTLVEASDRVG 42 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCc---EEEEEcCCcCc
Confidence 6999999999999999999998 776 99999998743
No 245
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.33 E-value=8.3e-06 Score=82.58 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEEcCEEEEccCC
Q 013890 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL---KDGR--TLEADIVVVGVGG 261 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vv~a~G~ 261 (434)
...+...+.+..++.||+++.++.+.++..+++|++.++.. .+|+ .+.++.||+|||-
T Consensus 142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 204 (588)
T PRK08958 142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGG 204 (588)
T ss_pred HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence 45677777777778899999999999988655788888764 3554 5789999999993
No 246
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.33 E-value=2.4e-06 Score=86.66 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=32.0
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.+||||||||.||++||+++++.|.+ |+|+||...
T Consensus 12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~---V~lveK~~~ 46 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMAEAGLK---TACITKVFP 46 (598)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCc---EEEEEccCC
Confidence 47999999999999999999998876 999999854
No 247
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.33 E-value=2.6e-06 Score=81.86 Aligned_cols=99 Identities=15% Similarity=0.262 Sum_probs=74.9
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+.+|..|++.|.+ |+++++.+...- .. ++.. ......+.+++
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~---Vtlv~~~~~~l~-------~~--------~~~~-------~~~~l~~~l~~ 195 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKA---VTLVDNAASLLA-------SL--------MPPE-------VSSRLQHRLTE 195 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCe---EEEEecCCcccc-------hh--------CCHH-------HHHHHHHHHHh
Confidence 35899999999999999999998876 999998754210 00 0000 01234566778
Q ss_pred CCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCccc
Q 013890 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLR 128 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~ 128 (434)
.+++++.++.+..+..+.+ .+.+.++.++.+|.+|+|+|..|..
T Consensus 196 ~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 196 MGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNT 241 (377)
T ss_pred CCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcch
Confidence 8999999999999987654 3566788899999999999998853
No 248
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.32 E-value=2.8e-05 Score=76.77 Aligned_cols=55 Identities=29% Similarity=0.410 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHcCc-EEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 013890 205 ADIAAFYEGYYANKGI-KIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 205 ~~~~~~~~~~l~~~gV-~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~ 261 (434)
..+...+.+..+..+. +++++++|++|+..+++ ..|.+.+|+++.+|.||+|+..
T Consensus 218 ~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~--~~v~~~~g~~~~~d~vI~a~p~ 273 (451)
T PRK11883 218 GGLQSLIEALEEKLPAGTIHKGTPVTKIDKSGDG--YEIVLSNGGEIEADAVIVAVPH 273 (451)
T ss_pred cHHHHHHHHHHHhCcCCeEEeCCEEEEEEEcCCe--EEEEECCCCEEEcCEEEECCCH
Confidence 3344444444444443 79999999999874333 4577888989999999999884
No 249
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.32 E-value=9.1e-06 Score=74.89 Aligned_cols=60 Identities=18% Similarity=0.314 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCC------C---------cEEEcCEEEEccCCccC
Q 013890 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKD------G---------RTLEADIVVVGVGGRPL 264 (434)
Q Consensus 205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~------g---------~~i~~d~vv~a~G~~p~ 264 (434)
..+.+++-+..++.||+++.+....++.-++||.+.+|.++| | -++.+..-|+|-|-+..
T Consensus 183 ~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~ 257 (621)
T KOG2415|consen 183 GQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGS 257 (621)
T ss_pred HHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccch
Confidence 346677778889999999999999999888899999988754 2 36788888888885443
No 250
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.32 E-value=1.5e-05 Score=81.12 Aligned_cols=58 Identities=17% Similarity=0.287 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEEcCEEEEccCC
Q 013890 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL---KDGR--TLEADIVVVGVGG 261 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vv~a~G~ 261 (434)
...+...+.+...+.||+++.++.+.++..++++++.++.. .+|+ .+.++.||+|||-
T Consensus 186 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 248 (635)
T PLN00128 186 GHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGG 248 (635)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCC
Confidence 45677777777788899999999999987644677877765 3453 5789999999993
No 251
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.30 E-value=2.8e-06 Score=86.09 Aligned_cols=36 Identities=33% Similarity=0.502 Sum_probs=32.3
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
..+||||||+|.||++||.++++.|.+ |+||||...
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~---V~vleK~~~ 46 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLS---VAVLSKVFP 46 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCc---EEEEeccCC
Confidence 358999999999999999999998886 999999753
No 252
>PLN02661 Putative thiazole synthesis
Probab=98.29 E-value=6.8e-05 Score=69.59 Aligned_cols=168 Identities=16% Similarity=0.126 Sum_probs=103.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CCeEEEEeeCCccCCcc--------------------------cC----------
Q 013890 162 KNGKAVVVGGGYIGLELSAALKIN-NIDVSMVYPEPWCMPRL--------------------------FT---------- 204 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~l~~~-g~~v~~~~~~~~~~~~~--------------------------~~---------- 204 (434)
..-.++|||+|..|+-+|..+++. |.+|+++++...+.... ++
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~h 170 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKH 170 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecc
Confidence 456899999999999999999976 89999999865432100 01
Q ss_pred -HHHHHHHH-HHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC------C--C------cEEEcCEEEEccCCccChh-h
Q 013890 205 -ADIAAFYE-GYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK------D--G------RTLEADIVVVGVGGRPLIS-L 267 (434)
Q Consensus 205 -~~~~~~~~-~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~------~--g------~~i~~d~vv~a~G~~p~~~-~ 267 (434)
....+.+. +.+++.||+++.++.+.++.. +++++.++.+. + + ..+.++.||+|||-....- .
T Consensus 171 a~e~~stLi~ka~~~~gVkI~~~t~V~DLI~-~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga~ 249 (357)
T PLN02661 171 AALFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAT 249 (357)
T ss_pred hHHHHHHHHHHHHhcCCCEEEeCeEeeeEEe-cCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcchhh
Confidence 01112233 344457899999999999876 45677777631 1 1 2689999999999554321 1
Q ss_pred -hh----ccccc---cCCc--------EEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhc
Q 013890 268 -FK----GQVAE---NKGG--------IETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 331 (434)
Q Consensus 268 -~~----~~~~~---~~g~--------i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 331 (434)
.+ .+... .... ..|+.+-+. +|++|++|=.+.... |.++=-+....=...|+.||+.|+.
T Consensus 250 ~~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev-~pgl~~~gm~~~~~~---g~~rmgp~fg~m~~sg~k~a~~~~~ 325 (357)
T PLN02661 250 GVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREV-VPGMIVTGMEVAEID---GSPRMGPTFGAMMISGQKAAHLALK 325 (357)
T ss_pred hhhcccccCCccCCCCccccchhhHHHHHHhccCcc-cCCEEEeccchhhhc---CCCccCchhHhHHhhhHHHHHHHHH
Confidence 11 11100 0111 223333333 899999997765322 2222113333334688999998887
Q ss_pred cCC
Q 013890 332 TEG 334 (434)
Q Consensus 332 ~~~ 334 (434)
.+.
T Consensus 326 ~l~ 328 (357)
T PLN02661 326 ALG 328 (357)
T ss_pred HHc
Confidence 664
No 253
>PRK07538 hypothetical protein; Provisional
Probab=98.29 E-value=3.3e-06 Score=82.27 Aligned_cols=33 Identities=21% Similarity=0.429 Sum_probs=31.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
||+|||||++|+++|..|+++|++ |+|+|+.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIE---VVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCc---EEEEEcCCc
Confidence 899999999999999999999987 999999875
No 254
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.28 E-value=6.8e-05 Score=67.77 Aligned_cols=63 Identities=19% Similarity=0.187 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh
Q 013890 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF 268 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~ 268 (434)
...-...+++.-...+-++.+++.|..+..-++| ..+...+|++-.+|.||+|+=......++
T Consensus 216 ~ggS~~yvq~laa~~~~~i~t~~~V~~l~rlPdG--v~l~~~~G~s~rFD~vViAth~dqAl~mL 278 (447)
T COG2907 216 AGGSRAYVQRLAADIRGRIETRTPVCRLRRLPDG--VVLVNADGESRRFDAVVIATHPDQALALL 278 (447)
T ss_pred ccchHHHHHHHhccccceeecCCceeeeeeCCCc--eEEecCCCCccccceeeeecChHHHHHhc
Confidence 4444556666555555569999999999887888 34666789888999999988654333333
No 255
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.28 E-value=4.1e-06 Score=79.11 Aligned_cols=99 Identities=20% Similarity=0.363 Sum_probs=78.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CeEEEEeeCCccCCcc----------cCHHHHHHHHHHHHHcC-cEEEcCCeEE
Q 013890 163 NGKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPRL----------FTADIAAFYEGYYANKG-IKIIKGTVAV 229 (434)
Q Consensus 163 ~~~vvVvG~g~~g~e~a~~l~~~g--~~v~~~~~~~~~~~~~----------~~~~~~~~~~~~l~~~g-V~~~~~~~v~ 229 (434)
.+++||+|+|+.|+.++..|.+.- .+++++++.+..+-.. -+.++...+.+.+++.+ |+++.+ +|+
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~ 81 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EVT 81 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEE-EEE
Confidence 579999999999999999999875 8899999988654211 12345557778888555 888876 678
Q ss_pred EEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChh
Q 013890 230 GFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 230 ~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~ 266 (434)
+|+. ++ ..|.++++.++++|.+|+++|..++..
T Consensus 82 ~ID~--~~--k~V~~~~~~~i~YD~LVvalGs~~~~f 114 (405)
T COG1252 82 DIDR--DA--KKVTLADLGEISYDYLVVALGSETNYF 114 (405)
T ss_pred EEcc--cC--CEEEeCCCccccccEEEEecCCcCCcC
Confidence 8876 44 357888877899999999999988865
No 256
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.28 E-value=2e-06 Score=74.86 Aligned_cols=101 Identities=22% Similarity=0.349 Sum_probs=71.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCC--cccCH-----------HHH--H--HHHHHHHHcCcEEEcCCe
Q 013890 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--RLFTA-----------DIA--A--FYEGYYANKGIKIIKGTV 227 (434)
Q Consensus 165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~--~~~~~-----------~~~--~--~~~~~l~~~gV~~~~~~~ 227 (434)
+++|||+|+.|+.+|..|.+.+.+++++++.+.... ..+.. ... + .+.+.+...+++++.++.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 80 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK 80 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence 589999999999999999999999999977653211 00011 011 1 334445788999999999
Q ss_pred EEEEEecCCCc-------EEEEEeCCCcEEEcCEEEEccCCccChh
Q 013890 228 AVGFTTNADGE-------VNEVKLKDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 228 v~~i~~~~~g~-------~~~v~~~~g~~i~~d~vv~a~G~~p~~~ 266 (434)
+.++... ++. +......++.++.+|.+|+|+|.+|...
T Consensus 81 v~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~ 125 (201)
T PF07992_consen 81 VVSIDPE-SKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTP 125 (201)
T ss_dssp EEEEEES-TTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEE
T ss_pred ccccccc-ccccccCcccceeeccCCceEecCCeeeecCcccccee
Confidence 9999873 332 1122345667899999999999887755
No 257
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.28 E-value=2.7e-06 Score=82.12 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=32.7
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.+||+|||||++|+++|..|++.|++ |+|+|+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~---v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGID---NVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCC---EEEEECCCC
Confidence 48999999999999999999999998 999999974
No 258
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.27 E-value=5.6e-06 Score=80.78 Aligned_cols=102 Identities=17% Similarity=0.216 Sum_probs=72.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc-c---------CHHHHHHHHHHHHHcCcEEEcCCeEEEE
Q 013890 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-F---------TADIAAFYEGYYANKGIKIIKGTVAVGF 231 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~-~---------~~~~~~~~~~~l~~~gV~~~~~~~v~~i 231 (434)
+.++++|||+|+.|+.+|..|.+.+.+|+++++.+.+.-.. + ..++...+.+.++..+++++.+ +|++|
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~V~~I 87 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRA-VVYDV 87 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEE-EEEEE
Confidence 45789999999999999999977778999999887643211 1 1223334556677788988764 78889
Q ss_pred EecCCCcEEEEEe--------CCCcEEEcCEEEEccCCccChh
Q 013890 232 TTNADGEVNEVKL--------KDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 232 ~~~~~g~~~~v~~--------~~g~~i~~d~vv~a~G~~p~~~ 266 (434)
+. +.+...+.. .+|+++++|.+|+|+|.+|...
T Consensus 88 d~--~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~ 128 (424)
T PTZ00318 88 DF--EEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTF 128 (424)
T ss_pred Ec--CCCEEEEecccccccccCCceEecCCEEEECCCcccCCC
Confidence 76 333222211 4567899999999999987643
No 259
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.27 E-value=6.5e-05 Score=72.65 Aligned_cols=97 Identities=22% Similarity=0.273 Sum_probs=74.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc-----------------c-----------------------
Q 013890 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-----------------F----------------------- 203 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~-----------------~----------------------- 203 (434)
-.|+|||+|+.|.-+|..|++.|.+|.++++.+.+.... +
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~ 83 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIE 83 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEe
Confidence 368999999999999999999999999999864431100 0
Q ss_pred ----------CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 013890 204 ----------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 204 ----------~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~ 261 (434)
...+.+++.+..++.|++++.++.+..+..++++.+..+. .++.++.++.||.|.|.
T Consensus 84 ~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~a~~vI~AdG~ 150 (396)
T COG0644 84 VPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVR-AGDDEVRAKVVIDADGV 150 (396)
T ss_pred cCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEE-cCCEEEEcCEEEECCCc
Confidence 1134456777888999999999999999875556544433 44468999999999985
No 260
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.26 E-value=4.7e-06 Score=79.73 Aligned_cols=97 Identities=19% Similarity=0.299 Sum_probs=72.9
Q ss_pred cEEEECCCHHHHHHHHHHHHC---CCeEEEEeeCCccCC-ccc---------CHHHHHHHHHHHHHcCcEEEcCCeEEEE
Q 013890 165 KAVVVGGGYIGLELSAALKIN---NIDVSMVYPEPWCMP-RLF---------TADIAAFYEGYYANKGIKIIKGTVAVGF 231 (434)
Q Consensus 165 ~vvVvG~g~~g~e~a~~l~~~---g~~v~~~~~~~~~~~-~~~---------~~~~~~~~~~~l~~~gV~~~~~~~v~~i 231 (434)
+++|||+|+.|+.+|..+.+. +.+|+++++.+.+.- ..+ ..++...+.+.+++.||+++.+ ++.++
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i 79 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI 79 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence 589999999999999998643 678999998765321 111 1233344566777889999876 78888
Q ss_pred EecCCCcEEEEEeCCCcEEEcCEEEEccCCccChh
Q 013890 232 TTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 232 ~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~ 266 (434)
+. +++ .|.+++|+++.+|.+|+|||.+|...
T Consensus 80 d~--~~~--~V~~~~g~~~~yD~LviAtG~~~~~~ 110 (364)
T TIGR03169 80 DP--DRR--KVLLANRPPLSYDVLSLDVGSTTPLS 110 (364)
T ss_pred ec--ccC--EEEECCCCcccccEEEEccCCCCCCC
Confidence 76 332 57788898999999999999888754
No 261
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.26 E-value=1.4e-05 Score=76.78 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=31.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013890 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
.++|||||++||+||++|++++ ++.+|+|+|+++..
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~-p~~~i~lfE~~~r~ 37 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAG-PDVEVTLFEADDRV 37 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhC-CCCcEEEEecCCCC
Confidence 6999999999999999999997 35669999998663
No 262
>PRK10262 thioredoxin reductase; Provisional
Probab=98.26 E-value=3.7e-05 Score=72.23 Aligned_cols=100 Identities=13% Similarity=0.116 Sum_probs=71.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc---c--------CCc----ccCHHHHHHHHHHHHHcCcEEEcCC
Q 013890 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW---C--------MPR----LFTADIAAFYEGYYANKGIKIIKGT 226 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~---~--------~~~----~~~~~~~~~~~~~l~~~gV~~~~~~ 226 (434)
+.++++|||+|+.|+.+|..+.+.|.++.+++.... + ++. ...+.+.+.+.+.....+++++.+
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 83 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD- 83 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee-
Confidence 467899999999999999999999999988863211 0 010 122456777788888888888776
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccCh
Q 013890 227 VAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 227 ~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~ 265 (434)
.+..++. .+....+..+++ ++.+|.||+|+|.+|..
T Consensus 84 ~v~~v~~--~~~~~~v~~~~~-~~~~d~vilAtG~~~~~ 119 (321)
T PRK10262 84 HINKVDL--QNRPFRLTGDSG-EYTCDALIIATGASARY 119 (321)
T ss_pred EEEEEEe--cCCeEEEEecCC-EEEECEEEECCCCCCCC
Confidence 4667765 222234444333 78999999999998864
No 263
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.25 E-value=3.8e-06 Score=87.93 Aligned_cols=97 Identities=26% Similarity=0.437 Sum_probs=73.8
Q ss_pred EEEECCCHHHHHHHHHHHHCC---CeEEEEeeCCccC------CcccC-----HHHHHHHHHHHHHcCcEEEcCCeEEEE
Q 013890 166 AVVVGGGYIGLELSAALKINN---IDVSMVYPEPWCM------PRLFT-----ADIAAFYEGYYANKGIKIIKGTVAVGF 231 (434)
Q Consensus 166 vvVvG~g~~g~e~a~~l~~~g---~~v~~~~~~~~~~------~~~~~-----~~~~~~~~~~l~~~gV~~~~~~~v~~i 231 (434)
++|||+|+.|+.+|..+.+.+ .+|+++.+.+.+. +.++. +++.....+.+++.||++++++.|.++
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 589999999999999987754 6899999887642 11111 122223356778899999999999999
Q ss_pred EecCCCcEEEEEeCCCcEEEcCEEEEccCCccChh
Q 013890 232 TTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 232 ~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~ 266 (434)
+. +. ..|.+.+|+++.+|.+|+|||.+|...
T Consensus 81 d~--~~--k~V~~~~g~~~~yD~LVlATGs~p~~p 111 (785)
T TIGR02374 81 DT--DQ--KQVITDAGRTLSYDKLILATGSYPFIL 111 (785)
T ss_pred EC--CC--CEEEECCCcEeeCCEEEECCCCCcCCC
Confidence 86 33 357788898999999999999988654
No 264
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.25 E-value=4.9e-06 Score=81.73 Aligned_cols=33 Identities=27% Similarity=0.404 Sum_probs=31.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcC-CCCCcEEEEeCCCC
Q 013890 7 KYVILGGGVSAGYAAREFAKQG-VKPGELAIISKEAV 42 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g-~~~~~V~vie~~~~ 42 (434)
||||||+|.||++||.+++++| .+ |+||||.+.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~---V~vlEk~~~ 34 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAAN---VVLLEKMPV 34 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCcc---EEEEecCCC
Confidence 7999999999999999999999 76 999999875
No 265
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.25 E-value=4.1e-06 Score=82.81 Aligned_cols=98 Identities=16% Similarity=0.248 Sum_probs=73.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHC
Q 013890 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
.+++|||+|+.|+.+|..|++.|.+ |+++++.+... +. + . +.+ .....+.+++.
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l---~~-----~----~---~~~--------~~~l~~~l~~~ 226 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAE---VTIVEALPRIL---PG-----E----D---KEI--------SKLAERALKKR 226 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCCcC---Cc-----C----C---HHH--------HHHHHHHHHHc
Confidence 5899999999999999999998876 99999985421 00 0 0 000 12345667788
Q ss_pred CcEEEcCCeEEEEeCCCCEE--EcCCC---cEEEeceEEEccCCCcccc
Q 013890 86 GIELILSTEIVRADIASKTL--LSATG---LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~v--~~~~~---~~~~~d~lilAtG~~~~~p 129 (434)
+++++.++.+..++.+.+.+ ...++ +++.+|.+|+|+|.+|...
T Consensus 227 gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~ 275 (462)
T PRK06416 227 GIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTE 275 (462)
T ss_pred CCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCC
Confidence 99999999999998765443 33444 6799999999999998754
No 266
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.25 E-value=4.6e-06 Score=82.61 Aligned_cols=99 Identities=17% Similarity=0.284 Sum_probs=71.8
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||++|+.+|..|++.|.+ |+++++.+... + .....+ .....+.+++
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~---Vtli~~~~~il---~---------~~~~~~-----------~~~l~~~l~~ 233 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVE---VTVVEAADRIL---P---------TEDAEL-----------SKEVARLLKK 233 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCe---EEEEEecCccC---C---------cCCHHH-----------HHHHHHHHHh
Confidence 36899999999999999999998876 99999886421 0 000000 1234466778
Q ss_pred CCcEEEcCCeEEEEeC--CCCE-E-EcCCC--cEEEeceEEEccCCCcccc
Q 013890 85 KGIELILSTEIVRADI--ASKT-L-LSATG--LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~--~~~~-v-~~~~~--~~~~~d~lilAtG~~~~~p 129 (434)
.|++++.++.+..++. +++. + ...++ .++.+|.+++|+|.+|..+
T Consensus 234 ~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 284 (472)
T PRK05976 234 LGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTE 284 (472)
T ss_pred cCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCC
Confidence 8999999999999874 3332 2 23345 4689999999999998754
No 267
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.24 E-value=4.8e-06 Score=80.75 Aligned_cols=34 Identities=35% Similarity=0.352 Sum_probs=31.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.+|+|||||++|+++|..|++.|++ |+|+|+.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~---V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWA---VTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCc
Confidence 6899999999999999999999987 999999875
No 268
>PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A ....
Probab=98.24 E-value=1.5e-05 Score=58.41 Aligned_cols=79 Identities=20% Similarity=0.430 Sum_probs=62.6
Q ss_pred eeEEeecCcceEEeecCC--CcEEEEcCCCccccCCcEEEEEEeCCEEEEEEEecCChHHHHHHHHHHHcCCCCCChhhh
Q 013890 346 YFYSRAFDLSWQFYGDNV--GDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVL 423 (434)
Q Consensus 346 ~~~~~~~~~~~~~~G~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~ 423 (434)
||||.+++..++.+|... ++.+..++.. ...|..+++++|+++|+..++ .+.++..+..+|+.+..+ +-+.|
T Consensus 1 ~FWSdQ~~~~iq~~G~~~~~~~~v~rg~~~----~~~~~~~y~~~g~lva~~~vn-~~~~~~~~rrli~~~~~~-~~~~l 74 (85)
T PF14759_consen 1 WFWSDQYGVRIQIAGLPGGADEVVVRGDPE----SGKFVAFYLRDGRLVAAVSVN-RPRDLRAARRLIAAGARV-DPARL 74 (85)
T ss_dssp EEEEEETTEEEEEEE-STTSSEEEEEEETT----TTEEEEEEEETTEEEEEEEES--HHHHHHHHHHHHTT-B---HHHH
T ss_pred CeecccCCCeEEEEECCCCCCEEEEEccCC----CCcEEEEEEcCCEEEEEEecC-CHHHHHHHHHHHHCCCCc-CHHHh
Confidence 689999999999999765 3455666644 578888999999999999997 588999999999999988 67899
Q ss_pred hccCCCc
Q 013890 424 KNEGLSF 430 (434)
Q Consensus 424 ~~~~~~~ 430 (434)
.++.++.
T Consensus 75 ~d~~~~L 81 (85)
T PF14759_consen 75 ADPSVDL 81 (85)
T ss_dssp HSTTSHH
T ss_pred cCCCCCh
Confidence 9988764
No 269
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.23 E-value=5e-06 Score=84.66 Aligned_cols=60 Identities=15% Similarity=0.204 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecC-CCcEEEEEe---CCCc--EEEcCEEEEccCCcc
Q 013890 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNA-DGEVNEVKL---KDGR--TLEADIVVVGVGGRP 263 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~-~g~~~~v~~---~~g~--~i~~d~vv~a~G~~p 263 (434)
+..+...+.+..++.|++++.++.|.++..++ ++.+..|.. .+++ ++.+|.||+|+|...
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 56788888899999999999999999998643 466666654 2343 589999999999553
No 270
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.23 E-value=1.3e-05 Score=78.23 Aligned_cols=33 Identities=18% Similarity=0.434 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHHHcC-CCCCcEEEEeCCCC
Q 013890 7 KYVILGGGVSAGYAAREFAKQG-VKPGELAIISKEAV 42 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g-~~~~~V~vie~~~~ 42 (434)
+|+|||||++|+++|..|++.| .+ |+|+|+.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~---v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLN---VQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCC---EEEEecCCc
Confidence 6999999999999999999987 46 999999865
No 271
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.23 E-value=3.9e-06 Score=79.83 Aligned_cols=101 Identities=14% Similarity=0.101 Sum_probs=69.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc--------cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 013890 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL--------FTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~ 233 (434)
.+++++|||+|+.|+++|..|.+.|.+|+++++.+.+.... ++.+......+.+.+.|++++.++.+..+..
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~~~ 96 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCGEP 96 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeeccc
Confidence 47899999999999999999999999999999887653211 2334444455667777999999988765432
Q ss_pred --cCCCcEEEEEe--CCCcEEEcCEEEEccCCc
Q 013890 234 --NADGEVNEVKL--KDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 234 --~~~g~~~~v~~--~~g~~i~~d~vv~a~G~~ 262 (434)
..++....... .++..+.+|.+|+|+|..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~ 129 (352)
T PRK12770 97 LHEEEGDEFVERIVSLEELVKKYDAVLIATGTW 129 (352)
T ss_pred cccccccccccccCCHHHHHhhCCEEEEEeCCC
Confidence 00111111111 112247899999999973
No 272
>PRK14694 putative mercuric reductase; Provisional
Probab=98.23 E-value=6e-06 Score=81.68 Aligned_cols=98 Identities=18% Similarity=0.323 Sum_probs=72.2
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+..|..|++.|.+ |+++++....+. . ...+ .....+.+++
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~---Vtlv~~~~~l~~---------~----~~~~-----------~~~l~~~l~~ 230 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSR---VTVLARSRVLSQ---------E----DPAV-----------GEAIEAAFRR 230 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEECCCCCCC---------C----CHHH-----------HHHHHHHHHh
Confidence 36899999999999999999999876 999987532110 0 0000 1244567778
Q ss_pred CCcEEEcCCeEEEEeCCCCEEEc-CCCcEEEeceEEEccCCCcccc
Q 013890 85 KGIELILSTEIVRADIASKTLLS-ATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~-~~~~~~~~d~lilAtG~~~~~p 129 (434)
.|++++.++.+..++.++..+.+ .++.++.+|.+++|+|..|...
T Consensus 231 ~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~ 276 (468)
T PRK14694 231 EGIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATGRTPNTE 276 (468)
T ss_pred CCCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCCCCcC
Confidence 89999999999999876654322 2345799999999999998754
No 273
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.23 E-value=7.6e-06 Score=83.57 Aligned_cols=37 Identities=14% Similarity=0.218 Sum_probs=33.4
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHc-CCCCCcEEEEeCCCC
Q 013890 3 EKSFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKEAV 42 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~-g~~~~~V~vie~~~~ 42 (434)
++.+||+||||||+||++|+.|+++ |.+ |+|||+.+.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~---v~IiE~~~~ 67 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDIT---TRIVERKPG 67 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCc---EEEEEcCCC
Confidence 4578999999999999999999995 887 999999864
No 274
>PRK07236 hypothetical protein; Provisional
Probab=98.23 E-value=1.1e-05 Score=77.85 Aligned_cols=103 Identities=24% Similarity=0.352 Sum_probs=74.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc-----ccCHHHHHHHHH-----------------------
Q 013890 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-----LFTADIAAFYEG----------------------- 213 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~-----~~~~~~~~~~~~----------------------- 213 (434)
...+|+|||+|+.|+.+|..|++.|.+|+++++.+..... .+.+...+.+.+
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g 84 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDG 84 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCC
Confidence 4578999999999999999999999999999988643221 022222222221
Q ss_pred --------------------HHHH--cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChh
Q 013890 214 --------------------YYAN--KGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 214 --------------------~l~~--~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~ 266 (434)
.|.+ .+++++.++.+++++.++++ ..+.+++|+++.+|+||.|-|.+....
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vIgADG~~S~vR 157 (386)
T PRK07236 85 RVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDR--VTARFADGRRETADLLVGADGGRSTVR 157 (386)
T ss_pred CEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCe--EEEEECCCCEEEeCEEEECCCCCchHH
Confidence 1111 13568999999999874333 468889999999999999999776654
No 275
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.23 E-value=1.8e-06 Score=60.31 Aligned_cols=32 Identities=31% Similarity=0.431 Sum_probs=28.1
Q ss_pred EECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890 10 ILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (434)
Q Consensus 10 IIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~ 44 (434)
|||||++||++|..|++.|++ |+|+|+++...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~---v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYR---VTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSE---EEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCc---EEEEecCcccC
Confidence 899999999999999999876 99999998643
No 276
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.23 E-value=6.6e-06 Score=79.55 Aligned_cols=35 Identities=11% Similarity=0.263 Sum_probs=32.7
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
++||+|||||++|+++|..|++.|++ |+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~---v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGID---SVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCC---EEEEEcCCc
Confidence 48999999999999999999999997 999999974
No 277
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.22 E-value=7.6e-06 Score=79.23 Aligned_cols=100 Identities=17% Similarity=0.246 Sum_probs=76.3
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+-.|..+++.|.+ |+|+|+.+...- .....+ .+...+.+++
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~---VTiie~~~~iLp------------~~D~ei-----------~~~~~~~l~~ 226 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSK---VTVVERGDRILP------------GEDPEI-----------SKELTKQLEK 226 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCCCC------------cCCHHH-----------HHHHHHHHHh
Confidence 46799999999999999999999987 999999975320 000000 1344566667
Q ss_pred CCcEEEcCCeEEEEeCCCC--EEEcCCCc--EEEeceEEEccCCCccccc
Q 013890 85 KGIELILSTEIVRADIASK--TLLSATGL--IFKYQILVIATGSTVLRLT 130 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~--~~~~d~lilAtG~~~~~p~ 130 (434)
.++.++.++.+..+...++ .+.++++. .+.+|.+++|+|-+|+...
T Consensus 227 ~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~ 276 (454)
T COG1249 227 GGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDG 276 (454)
T ss_pred CCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCC
Confidence 7899999999999877654 45556665 7899999999999998664
No 278
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.22 E-value=9.2e-06 Score=85.19 Aligned_cols=91 Identities=21% Similarity=0.225 Sum_probs=69.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc-------c-cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 013890 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-------L-FTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~-------~-~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~ 233 (434)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+... + ++.+....-.+.+++.||++++++.+ .+..
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di~l 616 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DLTV 616 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EEEh
Confidence 4689999999999999999999999999999987654221 1 34556666667888899999999876 2322
Q ss_pred cCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890 234 NADGEVNEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 234 ~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~ 264 (434)
.+.+...+|.||+|||.++.
T Consensus 617 -----------e~L~~~gYDaVILATGA~~~ 636 (1019)
T PRK09853 617 -----------EQLKNEGYDYVVVAIGADKN 636 (1019)
T ss_pred -----------hhheeccCCEEEECcCCCCC
Confidence 22234568999999998754
No 279
>PLN02487 zeta-carotene desaturase
Probab=98.22 E-value=3.7e-05 Score=76.92 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=47.9
Q ss_pred cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecC--CC--cEEEEEe---CCCcEEEcCEEEEccCCc
Q 013890 203 FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA--DG--EVNEVKL---KDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 203 ~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~--~g--~~~~v~~---~~g~~i~~d~vv~a~G~~ 262 (434)
+...+.+.+.+.++++|+++++++.|++|..+. ++ .+.++.+ .+++++.+|.||+|++..
T Consensus 293 ~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 293 PDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP 359 (569)
T ss_pred chHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence 455688889999999999999999999998742 33 3677887 344578999999999964
No 280
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.21 E-value=8.5e-06 Score=85.47 Aligned_cols=100 Identities=24% Similarity=0.496 Sum_probs=75.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC----CCeEEEEeeCCccC------Cccc----CHHHHHHHHHHHHHcCcEEEcCCeE
Q 013890 163 NGKAVVVGGGYIGLELSAALKIN----NIDVSMVYPEPWCM------PRLF----TADIAAFYEGYYANKGIKIIKGTVA 228 (434)
Q Consensus 163 ~~~vvVvG~g~~g~e~a~~l~~~----g~~v~~~~~~~~~~------~~~~----~~~~~~~~~~~l~~~gV~~~~~~~v 228 (434)
.++++|||+|+.|+.+|..|.+. +.+|+++.+.+.+. +.++ ..++.....+.+++.||+++.++.+
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V 82 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERA 82 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEE
Confidence 35899999999999999999764 47899998877642 1111 1222223345678899999999999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChh
Q 013890 229 VGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 229 ~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~ 266 (434)
.+++. +. ..|.+.+|+++.+|.+|+|||.+|...
T Consensus 83 ~~Id~--~~--~~V~~~~G~~i~yD~LVIATGs~p~~p 116 (847)
T PRK14989 83 ITINR--QE--KVIHSSAGRTVFYDKLIMATGSYPWIP 116 (847)
T ss_pred EEEeC--CC--cEEEECCCcEEECCEEEECCCCCcCCC
Confidence 99876 33 346778888999999999999988654
No 281
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.21 E-value=2.3e-05 Score=72.49 Aligned_cols=98 Identities=20% Similarity=0.251 Sum_probs=74.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc-------------------------------------------
Q 013890 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------------- 201 (434)
Q Consensus 165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~------------------------------------------- 201 (434)
.++|||+|+.|+-+|..|++.|.+|+++++.+.....
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE 81 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence 5899999999999999999999999999987532100
Q ss_pred ------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC-CCcEEEcCEEEEccCCccC
Q 013890 202 ------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK-DGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 202 ------~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~-~g~~i~~d~vv~a~G~~p~ 264 (434)
.-...+.+.+.+.+++.|++++.+++++++..++++ + .+.+. ++.++.+|.||.|+|....
T Consensus 82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~-~-~~~~~~~~~~~~a~~vv~a~G~~s~ 149 (295)
T TIGR02032 82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDR-V-VVIVRGGEGTVTAKIVIGADGSRSI 149 (295)
T ss_pred CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCE-E-EEEEcCccEEEEeCEEEECCCcchH
Confidence 012346667778888899999999999998763333 2 34434 3457999999999997653
No 282
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.21 E-value=5.5e-06 Score=87.77 Aligned_cols=93 Identities=18% Similarity=0.102 Sum_probs=73.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc--------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 013890 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~ 233 (434)
.+++|+|||+|+.|+.+|..|++.|++|+++++.+.+... -++.++.+...+.+++.||+|+.++.+.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG---- 380 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG---- 380 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec----
Confidence 4799999999999999999999999999999987654321 1466777777888999999999886541
Q ss_pred cCCCcEEEEEeCCCcEEEcCEEEEccCCc-cC
Q 013890 234 NADGEVNEVKLKDGRTLEADIVVVGVGGR-PL 264 (434)
Q Consensus 234 ~~~g~~~~v~~~~g~~i~~d~vv~a~G~~-p~ 264 (434)
..+.+++.....+|.|++|||.. |.
T Consensus 381 ------~dit~~~l~~~~yDAV~LAtGA~~pr 406 (944)
T PRK12779 381 ------KTATLEDLKAAGFWKIFVGTGAGLPT 406 (944)
T ss_pred ------cEEeHHHhccccCCEEEEeCCCCCCC
Confidence 13455555556799999999974 43
No 283
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.20 E-value=2e-06 Score=82.13 Aligned_cols=118 Identities=21% Similarity=0.308 Sum_probs=69.0
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC----CCCCC--CCccccccCCCCCCCCCC-----------
Q 013890 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV----APYER--PALSKAYLFPEGTARLPG----------- 65 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~----~~~~~--~~~~~~~~~~~~~~~~~~----------- 65 (434)
++.|||+|||||.||+.||...+|.|.+ ++++.-+.. .+++- ..+.|+.+..+ ...+-+
T Consensus 2 ~~~~DVIVIGgGHAG~EAA~AaARmG~k---tlLlT~~~dtig~msCNPaIGG~~KG~lvrE-IDALGG~Mg~~~D~~~I 77 (621)
T COG0445 2 PKEYDVIVIGGGHAGVEAALAAARMGAK---TLLLTLNLDTIGEMSCNPAIGGPGKGHLVRE-IDALGGLMGKAADKAGI 77 (621)
T ss_pred CCCCceEEECCCccchHHHHhhhccCCe---EEEEEcCCCceeecccccccCCcccceeEEe-ehhccchHHHhhhhcCC
Confidence 3459999999999999999999999987 777766643 11110 11112211110 000000
Q ss_pred -cce-ecCC----------CCCCCCHhHHH-----HCCcEEEcCCeEEEEeCCCC----EEEcCCCcEEEeceEEEccCC
Q 013890 66 -FHV-CVGS----------GGERLLPEWYK-----EKGIELILSTEIVRADIASK----TLLSATGLIFKYQILVIATGS 124 (434)
Q Consensus 66 -~~~-~~~~----------~~~~~~~~~~~-----~~~v~~~~~~~v~~i~~~~~----~v~~~~~~~~~~d~lilAtG~ 124 (434)
|.. ..+. .+...+..+++ ..+++++++ .|.++..++. -|.+.+|..+.++.|||+||.
T Consensus 78 Q~r~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGT 156 (621)
T COG0445 78 QFRMLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT 156 (621)
T ss_pred chhhccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence 000 0000 00112222222 258888887 7777665333 367789999999999999996
Q ss_pred C
Q 013890 125 T 125 (434)
Q Consensus 125 ~ 125 (434)
-
T Consensus 157 F 157 (621)
T COG0445 157 F 157 (621)
T ss_pred c
Confidence 3
No 284
>PRK06116 glutathione reductase; Validated
Probab=98.20 E-value=7.3e-06 Score=80.75 Aligned_cols=99 Identities=17% Similarity=0.129 Sum_probs=74.6
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+-+|..|++.|.+ |+++++.+...- .+ ...+ .....+.+++
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l~--------~~----~~~~-----------~~~l~~~L~~ 220 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSE---THLFVRGDAPLR--------GF----DPDI-----------RETLVEEMEK 220 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCCcc--------cc----CHHH-----------HHHHHHHHHH
Confidence 36899999999999999999998876 999998753210 00 0000 1234566778
Q ss_pred CCcEEEcCCeEEEEeCCC-C--EEEcCCCcEEEeceEEEccCCCcccc
Q 013890 85 KGIELILSTEIVRADIAS-K--TLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~-~--~v~~~~~~~~~~d~lilAtG~~~~~p 129 (434)
.|++++.++.+.+++.++ . .+.+.+++++.+|.+++|+|.+|...
T Consensus 221 ~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~ 268 (450)
T PRK06116 221 KGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTD 268 (450)
T ss_pred CCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCC
Confidence 899999999999997543 2 35566788899999999999988754
No 285
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.19 E-value=6.5e-06 Score=80.67 Aligned_cols=96 Identities=14% Similarity=0.190 Sum_probs=73.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHC
Q 013890 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
.+++|||||+.|+-+|..|++.|.+ |+++++.+... +. +. ..+ .....+.+++.
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~---Vtli~~~~~l~---~~-----~d----~~~-----------~~~l~~~l~~~ 202 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLH---PTLIHRSDKIN---KL-----MD----ADM-----------NQPILDELDKR 202 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCc---EEEEecccccc---hh-----cC----HHH-----------HHHHHHHHHhc
Confidence 5899999999999999999998876 99999875421 00 00 000 12345667788
Q ss_pred CcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccc
Q 013890 86 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p 129 (434)
|++++.++.+.+++. ..+.+.+++.+.+|.+++|+|.+|...
T Consensus 203 gI~i~~~~~v~~i~~--~~v~~~~g~~~~~D~vl~a~G~~pn~~ 244 (438)
T PRK13512 203 EIPYRLNEEIDAING--NEVTFKSGKVEHYDMIIEGVGTHPNSK 244 (438)
T ss_pred CCEEEECCeEEEEeC--CEEEECCCCEEEeCEEEECcCCCcChH
Confidence 999999999999864 467777788899999999999998643
No 286
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.18 E-value=5.7e-06 Score=81.58 Aligned_cols=90 Identities=21% Similarity=0.237 Sum_probs=70.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCC-------c-ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 013890 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------R-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~-------~-~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~ 233 (434)
.+++++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ..+.++.....+.+++.||+++.++.+..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~--- 215 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR--- 215 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC---
Confidence 468999999999999999999999999999998876421 1 13567778888889999999999987521
Q ss_pred cCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890 234 NADGEVNEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 234 ~~~g~~~~v~~~~g~~i~~d~vv~a~G~~ 262 (434)
.+.+++. .+.+|.||+|||..
T Consensus 216 -------~v~~~~~-~~~~d~vvlAtGa~ 236 (457)
T PRK11749 216 -------DITLDEL-RAGYDAVFIGTGAG 236 (457)
T ss_pred -------ccCHHHH-HhhCCEEEEccCCC
Confidence 1222233 26799999999985
No 287
>PRK07846 mycothione reductase; Reviewed
Probab=98.18 E-value=9.2e-06 Score=79.80 Aligned_cols=98 Identities=22% Similarity=0.304 Sum_probs=71.2
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... +. + ...+ .....+ +.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~---Vtli~~~~~ll---~~-----~----d~~~-----------~~~l~~-l~~ 218 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVR---VTVVNRSGRLL---RH-----L----DDDI-----------SERFTE-LAS 218 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCccc---cc-----c----CHHH-----------HHHHHH-HHh
Confidence 36899999999999999999998876 99999985421 00 0 0000 011122 234
Q ss_pred CCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCcccc
Q 013890 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~p 129 (434)
.+++++.++.+.+++.+++ .+.+.+++++.+|.+++|+|.+|...
T Consensus 219 ~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~ 265 (451)
T PRK07846 219 KRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGD 265 (451)
T ss_pred cCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCcc
Confidence 6799999999999986554 35556778899999999999998754
No 288
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.17 E-value=8.3e-06 Score=80.68 Aligned_cols=99 Identities=18% Similarity=0.231 Sum_probs=72.5
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+..... + ...+ .....+.+++
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l~~--------~----d~~~-----------~~~l~~~l~~ 219 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSE---VTILQRSDRLLPR--------E----EPEI-----------SAAVEEALAE 219 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCCcCCCc--------c----CHHH-----------HHHHHHHHHH
Confidence 36899999999999999999999876 9999998542100 0 0000 1234566778
Q ss_pred CCcEEEcCCeEEEEeCCCC--EEEcC---CCcEEEeceEEEccCCCcccc
Q 013890 85 KGIELILSTEIVRADIASK--TLLSA---TGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~---~~~~~~~d~lilAtG~~~~~p 129 (434)
.+++++.++.+..+..+++ .+.+. +++++.+|.+++|+|.+|...
T Consensus 220 ~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~ 269 (463)
T TIGR02053 220 EGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTD 269 (463)
T ss_pred cCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCC
Confidence 8999999998999876543 23332 235799999999999998755
No 289
>PRK12839 hypothetical protein; Provisional
Probab=98.17 E-value=4.7e-05 Score=76.85 Aligned_cols=65 Identities=22% Similarity=0.245 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe--CCCc-EE-EcCEEEEccC-CccChhhh
Q 013890 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL--KDGR-TL-EADIVVVGVG-GRPLISLF 268 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~--~~g~-~i-~~d~vv~a~G-~~p~~~~~ 268 (434)
+..+...+.+..++.|++++.++.++++..++++++.+|.. .+++ .+ .++.||+|+| +.-|.++.
T Consensus 213 g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~~~~ 282 (572)
T PRK12839 213 GTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPNDVDRR 282 (572)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCHHHH
Confidence 56677788888899999999999999997645688888765 3443 23 4589999997 55555544
No 290
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.17 E-value=8.6e-05 Score=74.78 Aligned_cols=64 Identities=27% Similarity=0.213 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC-CCc--EEEc-CEEEEccC-CccChhhh
Q 013890 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK-DGR--TLEA-DIVVVGVG-GRPLISLF 268 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~-~g~--~i~~-d~vv~a~G-~~p~~~~~ 268 (434)
...+...+.+.+++.||+++.++.++++.. ++|++.+|... +|+ .+.+ +.||+|+| +.-|.++.
T Consensus 216 G~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~em~ 284 (564)
T PRK12845 216 GQALAAGLFAGVLRAGIPIWTETSLVRLTD-DGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDMEMR 284 (564)
T ss_pred hHHHHHHHHHHHHHCCCEEEecCEeeEEEe-cCCEEEEEEEEECCcEEEEEcCCEEEEecCCccccHHHH
Confidence 577888888889999999999999999875 46888887543 343 3455 57999988 66565544
No 291
>PRK06370 mercuric reductase; Validated
Probab=98.16 E-value=1e-05 Score=79.96 Aligned_cols=99 Identities=17% Similarity=0.190 Sum_probs=72.6
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+..... . . +.+ .....+.+++
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~---Vtli~~~~~~l~~--------~----~---~~~--------~~~l~~~l~~ 224 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSE---VTVIERGPRLLPR--------E----D---EDV--------AAAVREILER 224 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCCCCcc--------c----C---HHH--------HHHHHHHHHh
Confidence 36899999999999999999999876 9999998642100 0 0 000 1234566778
Q ss_pred CCcEEEcCCeEEEEeCCCCE--EEc---CCCcEEEeceEEEccCCCcccc
Q 013890 85 KGIELILSTEIVRADIASKT--LLS---ATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~---~~~~~~~~d~lilAtG~~~~~p 129 (434)
.|++++.++.+..++.+++. +.+ .++.++.+|.+|+|+|.+|...
T Consensus 225 ~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 225 EGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTD 274 (463)
T ss_pred CCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCC
Confidence 89999999999999865442 332 2345799999999999998754
No 292
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.16 E-value=9.8e-06 Score=80.16 Aligned_cols=99 Identities=21% Similarity=0.251 Sum_probs=74.2
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+.+|..+++.|.+ |+++++.+...- .+. ..+ .....+.+++
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l~--------~~d----~~~-----------~~~l~~~l~~ 228 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVK---VTLINTRDRLLS--------FLD----DEI-----------SDALSYHLRD 228 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCcCC--------cCC----HHH-----------HHHHHHHHHH
Confidence 46899999999999999999999876 999998854210 000 000 1234566778
Q ss_pred CCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCcccc
Q 013890 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~p 129 (434)
.|++++.++.+..+..+++ .+.+.++.++.+|.+++|+|.+|...
T Consensus 229 ~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 229 SGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTD 275 (461)
T ss_pred cCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCcccc
Confidence 8999999999999875444 34456777899999999999998754
No 293
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.15 E-value=1.3e-05 Score=78.76 Aligned_cols=99 Identities=19% Similarity=0.239 Sum_probs=73.6
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+.+|..+++.|.+ |+++++.+..... + ...+ .....+.+++
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~---Vtli~~~~~~l~~--------~----d~~~-----------~~~l~~~l~~ 219 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQ---VTLIYRGELILRG--------F----DDDM-----------RALLARNMEG 219 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEEeCCCCCcc--------c----CHHH-----------HHHHHHHHHH
Confidence 35799999999999999999998876 9999987542100 0 0000 1234566778
Q ss_pred CCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCcccc
Q 013890 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~p 129 (434)
.|++++.++.+..++..+. .+.+.+++++.+|.+|+|+|..|...
T Consensus 220 ~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~ 266 (446)
T TIGR01424 220 RGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTK 266 (446)
T ss_pred CCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCCC
Confidence 8999999999999875433 45556778899999999999988653
No 294
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.15 E-value=1.2e-05 Score=81.51 Aligned_cols=64 Identities=19% Similarity=0.167 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCC-Cc--EEEc-CEEEEccC-CccChhhh
Q 013890 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKD-GR--TLEA-DIVVVGVG-GRPLISLF 268 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~-g~--~i~~-d~vv~a~G-~~p~~~~~ 268 (434)
...+...+.+.+++.||+++.++.+.++.. +++++.+|...+ ++ ++.+ +.||+|+| +..|.+++
T Consensus 220 G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~ 288 (578)
T PRK12843 220 GNALIGRLLYSLRARGVRILTQTDVESLET-DHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLR 288 (578)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEe-eCCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHH
Confidence 567788888999999999999999999876 367888877644 33 4676 78999999 55555554
No 295
>PLN02463 lycopene beta cyclase
Probab=98.14 E-value=3.3e-05 Score=75.34 Aligned_cols=98 Identities=19% Similarity=0.270 Sum_probs=73.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC-Ccc----------------------------------------
Q 013890 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-PRL---------------------------------------- 202 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~-~~~---------------------------------------- 202 (434)
-.++|||+|+.|+-+|..|++.|.+|.++++.+... +..
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y 108 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY 108 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence 379999999999999999999999999998764211 000
Q ss_pred ---cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890 203 ---FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 203 ---~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~ 264 (434)
...++.+.+.+.+.+.||+++ ...|.+++..+++ ..|.+++|+++.+|.||.|+|..+.
T Consensus 109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~--~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESK--SLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe--EEEEECCCCEEEcCEEEECcCCCcC
Confidence 011233556666677899997 5688999873333 5688899989999999999998754
No 296
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.14 E-value=1.1e-05 Score=79.92 Aligned_cols=99 Identities=19% Similarity=0.219 Sum_probs=72.7
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+.+|..|++.|.+ |+|+++.+... + .....+ .....+.+++
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~---Vtlv~~~~~~l---~---------~~d~~~-----------~~~l~~~l~~ 225 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVD---VTIVEFLDRAL---P---------NEDAEV-----------SKEIAKQYKK 225 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEecCCCcC---C---------ccCHHH-----------HHHHHHHHHH
Confidence 35899999999999999999999876 99999875311 0 000000 1234567788
Q ss_pred CCcEEEcCCeEEEEeCCCCE--EEcC--CC--cEEEeceEEEccCCCcccc
Q 013890 85 KGIELILSTEIVRADIASKT--LLSA--TG--LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~--~~--~~~~~d~lilAtG~~~~~p 129 (434)
.|++++.++.+..+..+++. +.+. ++ .++.+|.+++|+|.+|...
T Consensus 226 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 276 (466)
T PRK07818 226 LGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVE 276 (466)
T ss_pred CCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCC
Confidence 89999999999999765543 3332 45 4799999999999998754
No 297
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.14 E-value=3.6e-05 Score=77.67 Aligned_cols=98 Identities=16% Similarity=0.283 Sum_probs=75.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC------------Cc---ccCHHHHHHHHHHHHHcCcEEEcCCeE
Q 013890 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM------------PR---LFTADIAAFYEGYYANKGIKIIKGTVA 228 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~------------~~---~~~~~~~~~~~~~l~~~gV~~~~~~~v 228 (434)
..++|||+|+.|+.+|..+++.|.+|+++++.. +. +. ....++.+.+.+.+++.|++++ +..+
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V 82 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEV 82 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEE
Confidence 479999999999999999999999999998753 21 10 0124677788888888999986 6678
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChh
Q 013890 229 VGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 229 ~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~ 266 (434)
..+.. ++....+.+.++ ++.+|.+|+|||.+|...
T Consensus 83 ~~i~~--~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~ 117 (555)
T TIGR03143 83 LDVDF--DGDIKTIKTARG-DYKTLAVLIATGASPRKL 117 (555)
T ss_pred EEEEe--cCCEEEEEecCC-EEEEeEEEECCCCccCCC
Confidence 88876 334445666666 689999999999987653
No 298
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.14 E-value=1.4e-05 Score=79.44 Aligned_cols=33 Identities=27% Similarity=0.472 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
|||+|||||+||+.+|..+++.|.+ |+|+|++.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~---v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAK---TLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCC---EEEEeccc
Confidence 6999999999999999999999987 99999874
No 299
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.12 E-value=1.3e-05 Score=78.79 Aligned_cols=99 Identities=17% Similarity=0.193 Sum_probs=73.5
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+-.|..|++.|.+ |+++++.+... . . + ...+ .....+.+++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~---Vtli~~~~~il-~------~-~----d~~~-----------~~~~~~~l~~ 219 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSE---THLVIRHERVL-R------S-F----DSMI-----------SETITEEYEK 219 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCCC-c------c-c----CHHH-----------HHHHHHHHHH
Confidence 36899999999999999999999876 99999885421 0 0 0 0000 1234566778
Q ss_pred CCcEEEcCCeEEEEeCCC-C--EEEcCCC-cEEEeceEEEccCCCcccc
Q 013890 85 KGIELILSTEIVRADIAS-K--TLLSATG-LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~-~--~v~~~~~-~~~~~d~lilAtG~~~~~p 129 (434)
.|++++.++.+..+..+. . .+.+.++ ..+.+|.+++|+|..|...
T Consensus 220 ~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 220 EGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred cCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 899999999999987542 2 3555566 5799999999999998754
No 300
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.11 E-value=4.6e-05 Score=73.74 Aligned_cols=102 Identities=24% Similarity=0.312 Sum_probs=77.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC--------------C-----------------c----------
Q 013890 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--------------P-----------------R---------- 201 (434)
Q Consensus 163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~--------------~-----------------~---------- 201 (434)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+..- + .
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 85 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMRV 85 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEEE
Confidence 4579999999999999999999999999999754210 0 0
Q ss_pred ---------cc---------------CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 013890 202 ---------LF---------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVV 257 (434)
Q Consensus 202 ---------~~---------------~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~ 257 (434)
.+ ...+.+.+.+.+++.|++++.++.++++..++++ ..+++++|+++.+|.||.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~a~~vV~ 163 (392)
T PRK08773 86 WDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADR--VRLRLDDGRRLEAALAIA 163 (392)
T ss_pred EeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCe--EEEEECCCCEEEeCEEEE
Confidence 00 0123445566677789999999999999873333 457788888999999999
Q ss_pred ccCCccChh
Q 013890 258 GVGGRPLIS 266 (434)
Q Consensus 258 a~G~~p~~~ 266 (434)
|.|..+...
T Consensus 164 AdG~~S~vr 172 (392)
T PRK08773 164 ADGAASTLR 172 (392)
T ss_pred ecCCCchHH
Confidence 999987543
No 301
>PRK06834 hypothetical protein; Provisional
Probab=98.10 E-value=5.4e-05 Score=75.11 Aligned_cols=101 Identities=33% Similarity=0.542 Sum_probs=77.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC---Cc--ccC----------------------------------
Q 013890 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM---PR--LFT---------------------------------- 204 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~---~~--~~~---------------------------------- 204 (434)
..|+|||+|+.|+-+|..|++.|.+|+++++.+... ++ .+.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 83 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD 83 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence 479999999999999999999999999998764311 00 000
Q ss_pred ----------------HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChh
Q 013890 205 ----------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 205 ----------------~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~ 266 (434)
..+.+.+.+.+++.|++++.++++++++.++++ ..+++.+|+++.+|+||.|.|.++...
T Consensus 84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~--v~v~~~~g~~i~a~~vVgADG~~S~vR 159 (488)
T PRK06834 84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG--VDVELSDGRTLRAQYLVGCDGGRSLVR 159 (488)
T ss_pred cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEEEEecCCCCCcH
Confidence 123344556677789999999999999874443 456777888899999999999887654
No 302
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.09 E-value=1.4e-05 Score=79.29 Aligned_cols=99 Identities=13% Similarity=0.220 Sum_probs=72.4
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+..... . ...+ .....+.+++
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l~~--------~----d~~~-----------~~~~~~~l~~ 236 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAE---VTILEALPAFLAA--------A----DEQV-----------AKEAAKAFTK 236 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEeCCCccCCc--------C----CHHH-----------HHHHHHHHHH
Confidence 36899999999999999999998876 9999998642100 0 0000 1233466778
Q ss_pred CCcEEEcCCeEEEEeCCCCE--EEcCC--C--cEEEeceEEEccCCCcccc
Q 013890 85 KGIELILSTEIVRADIASKT--LLSAT--G--LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~~--~--~~~~~d~lilAtG~~~~~p 129 (434)
.|++++.++.+..++.+.+. +...+ + ..+.+|.+++|+|..|...
T Consensus 237 ~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~ 287 (475)
T PRK06327 237 QGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTD 287 (475)
T ss_pred cCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCC
Confidence 89999999999999866543 33333 2 4699999999999998755
No 303
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.09 E-value=5.2e-05 Score=75.51 Aligned_cols=137 Identities=24% Similarity=0.288 Sum_probs=89.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc------------------------------c----------
Q 013890 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------------------------------F---------- 203 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~------------------------------~---------- 203 (434)
|||+|||+|.+|+-.+..|.+.|.+++++++.+.+...+ +
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 799999999999999999999999999999876542110 0
Q ss_pred -CHHHHHHHHHHHHHcCc--EEEcCCeEEEEEecCCC---cEEEEEeCC-Cc--EEEcCEEEEccCC--ccChhhh-hcc
Q 013890 204 -TADIAAFYEGYYANKGI--KIIKGTVAVGFTTNADG---EVNEVKLKD-GR--TLEADIVVVGVGG--RPLISLF-KGQ 271 (434)
Q Consensus 204 -~~~~~~~~~~~l~~~gV--~~~~~~~v~~i~~~~~g---~~~~v~~~~-g~--~i~~d~vv~a~G~--~p~~~~~-~~~ 271 (434)
..++.+.++...+..++ .+.++++|.+++..++. ....|++.+ |+ +..+|.|++|+|. .|+.... -.+
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~G 161 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFPG 161 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----CT
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhhh
Confidence 14688888999888887 58899999999864442 235566644 42 3468999999994 4554431 123
Q ss_pred ccccCCcEEeCCCCCC----CCCceEEeccccc
Q 013890 272 VAENKGGIETDDFFKT----SADDVYAVGDVAT 300 (434)
Q Consensus 272 ~~~~~g~i~vd~~~~t----~~~~iya~Gd~~~ 300 (434)
++.-+|.+.--...+. ...+|-++|-..+
T Consensus 162 ~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~S 194 (531)
T PF00743_consen 162 LEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNS 194 (531)
T ss_dssp GGGHCSEEEEGGG--TGGGGTTSEEEEESSSHH
T ss_pred hhcCCeeEEccccCcChhhcCCCEEEEEeCCHh
Confidence 3333455555544443 4567888886554
No 304
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.09 E-value=5.3e-05 Score=73.39 Aligned_cols=102 Identities=22% Similarity=0.248 Sum_probs=75.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc----------------------------------cc-----
Q 013890 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------LF----- 203 (434)
Q Consensus 163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~----------------------------------~~----- 203 (434)
+.+|+|||+|+.|+-+|..|++.|.+|+++++.+.+... ++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA 83 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence 568999999999999999999999999999887542100 00
Q ss_pred ------------------------CHHHHHHHHHHHHHc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEc
Q 013890 204 ------------------------TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVG 258 (434)
Q Consensus 204 ------------------------~~~~~~~~~~~l~~~-gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a 258 (434)
..++.+.+.+.+.+. +++++.++.++++..++++ ..+.+.+|+++.+|+||.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vV~A 161 (396)
T PRK08163 84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG--VTVFDQQGNRWTGDALIGC 161 (396)
T ss_pred CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc--eEEEEcCCCEEecCEEEEC
Confidence 001223344445454 4999999999999863333 4577888889999999999
Q ss_pred cCCccChh
Q 013890 259 VGGRPLIS 266 (434)
Q Consensus 259 ~G~~p~~~ 266 (434)
.|......
T Consensus 162 dG~~S~~r 169 (396)
T PRK08163 162 DGVKSVVR 169 (396)
T ss_pred CCcChHHH
Confidence 99876653
No 305
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.07 E-value=9.1e-06 Score=79.80 Aligned_cols=92 Identities=18% Similarity=0.199 Sum_probs=69.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC-------Cc-ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 013890 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~-------~~-~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~ 233 (434)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+.+. +. .++.++.+...+.+++.||+++.++.+.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~---- 207 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVG---- 207 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccC----
Confidence 46799999999999999999999999999999876442 11 1466777777788899999999987541
Q ss_pred cCCCcEEEEEeCCCcEEEcCEEEEccCC-ccC
Q 013890 234 NADGEVNEVKLKDGRTLEADIVVVGVGG-RPL 264 (434)
Q Consensus 234 ~~~g~~~~v~~~~g~~i~~d~vv~a~G~-~p~ 264 (434)
..+.+++. ...+|.||+|||. +|.
T Consensus 208 ------~~v~~~~~-~~~yd~viiAtGa~~p~ 232 (449)
T TIGR01316 208 ------KTATLEEL-FSQYDAVFIGTGAGLPK 232 (449)
T ss_pred ------CcCCHHHH-HhhCCEEEEeCCCCCCC
Confidence 11333333 3468999999997 554
No 306
>PRK08244 hypothetical protein; Provisional
Probab=98.07 E-value=5.8e-05 Score=75.35 Aligned_cols=103 Identities=23% Similarity=0.411 Sum_probs=75.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc------------------------------------------
Q 013890 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------------ 201 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~------------------------------------------ 201 (434)
..|+|||+|+.|+-+|..|++.|.+|+++++.+.....
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL 82 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence 36999999999999999999999999999976432100
Q ss_pred -c------------cC-HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-cEEEcCEEEEccCCccChh
Q 013890 202 -L------------FT-ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG-RTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 202 -~------------~~-~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g-~~i~~d~vv~a~G~~p~~~ 266 (434)
+ ++ ..+.+.+.+.+++.|++++.++++++++.++++....+...+| +++.+|+||.|.|.+....
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~vR 162 (493)
T PRK08244 83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIVR 162 (493)
T ss_pred CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChHHH
Confidence 0 00 1344556667778899999999999998744443223333356 4799999999999877553
No 307
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=0.00013 Score=67.10 Aligned_cols=99 Identities=15% Similarity=0.198 Sum_probs=75.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCe-EEEEeeCC-c--------------cCCcccCHHHHHHHHHHHHHcCcEEEcCCe
Q 013890 164 GKAVVVGGGYIGLELSAALKINNID-VSMVYPEP-W--------------CMPRLFTADIAAFYEGYYANKGIKIIKGTV 227 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g~~-v~~~~~~~-~--------------~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~ 227 (434)
-.++|||+|+.|+-+|..+.+.+.+ +.+++... . +......+++.+.+++..+..|+++.. ..
T Consensus 4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~ 82 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE 82 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EE
Confidence 4689999999999999999999988 44444321 1 111124567888888888899999988 67
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChh
Q 013890 228 AVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 228 v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~ 266 (434)
+.+++..++ ...|.+.+++ +.++.||+|||..+...
T Consensus 83 v~~v~~~~~--~F~v~t~~~~-~~ak~vIiAtG~~~~~~ 118 (305)
T COG0492 83 VEKVELEGG--PFKVKTDKGT-YEAKAVIIATGAGARKL 118 (305)
T ss_pred EEEEeecCc--eEEEEECCCe-EEEeEEEECcCCcccCC
Confidence 777776222 5788888887 99999999999766543
No 308
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.06 E-value=3e-05 Score=76.67 Aligned_cols=98 Identities=17% Similarity=0.273 Sum_probs=73.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHC
Q 013890 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
.+++|||+|..|+-+|..|++.|.+ |+++++.+...-. . .... .....+.+++.
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~---Vtli~~~~~~l~~-----------~-d~~~-----------~~~l~~~L~~~ 231 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVK---VTLVSSRDRVLPG-----------E-DADA-----------AEVLEEVFARR 231 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCcCCCC-----------C-CHHH-----------HHHHHHHHHHC
Confidence 5799999999999999999998876 9999987542100 0 0000 12345677889
Q ss_pred CcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCcccc
Q 013890 86 GIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~p 129 (434)
|++++.++.+..++.+++ .+.+.+++++.+|.+++|+|..|...
T Consensus 232 gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~ 277 (466)
T PRK07845 232 GMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTA 277 (466)
T ss_pred CcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCC
Confidence 999999999999865443 34556778899999999999998754
No 309
>PLN02507 glutathione reductase
Probab=98.05 E-value=2e-05 Score=78.31 Aligned_cols=99 Identities=17% Similarity=0.256 Sum_probs=73.6
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+-.|..+++.|.+ |+|+++.+... . . +. ..+ .....+.+++
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~---Vtli~~~~~~l-~------~-~d----~~~-----------~~~l~~~l~~ 256 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGAT---VDLFFRKELPL-R------G-FD----DEM-----------RAVVARNLEG 256 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEEecCCcC-c------c-cC----HHH-----------HHHHHHHHHh
Confidence 35899999999999999999998876 99999875311 0 0 00 000 1234466778
Q ss_pred CCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCcccc
Q 013890 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~p 129 (434)
.|++++.++.+..+..+++ .+...+++++.+|.+++|+|.+|...
T Consensus 257 ~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~ 303 (499)
T PLN02507 257 RGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTK 303 (499)
T ss_pred CCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCC
Confidence 8999999999999875433 35556677899999999999998754
No 310
>PRK07045 putative monooxygenase; Reviewed
Probab=98.05 E-value=6.5e-05 Score=72.58 Aligned_cols=104 Identities=19% Similarity=0.280 Sum_probs=78.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCC---------c--------------------c-----------
Q 013890 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP---------R--------------------L----------- 202 (434)
Q Consensus 163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~---------~--------------------~----------- 202 (434)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.. . .
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~ 84 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKE 84 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCc
Confidence 34799999999999999999999999999987653310 0 0
Q ss_pred ------c------C-------HHHHHHHHHHHH-HcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890 203 ------F------T-------ADIAAFYEGYYA-NKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 203 ------~------~-------~~~~~~~~~~l~-~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~ 262 (434)
+ + .++.+.+.+.+. ..|++++++++++.++.++++.+..|++++|+++.+|+||-|.|.+
T Consensus 85 ~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~ 164 (388)
T PRK07045 85 LIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGAR 164 (388)
T ss_pred EEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCC
Confidence 0 0 022233444443 3579999999999998766666667888999999999999999987
Q ss_pred cChh
Q 013890 263 PLIS 266 (434)
Q Consensus 263 p~~~ 266 (434)
....
T Consensus 165 S~vR 168 (388)
T PRK07045 165 SMIR 168 (388)
T ss_pred hHHH
Confidence 6554
No 311
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.04 E-value=1.7e-05 Score=77.27 Aligned_cols=97 Identities=26% Similarity=0.330 Sum_probs=76.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHC
Q 013890 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
.+++|||+|+.|+.+|..|+++|++ |+++|+.+...-. ++. +.+ ...+.+.++..
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~---v~l~e~~~~~~~~-------~~~-------~~~--------~~~~~~~l~~~ 191 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKK---VTLIEAADRLGGQ-------LLD-------PEV--------AEELAELLEKY 191 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCe---EEEEEcccccchh-------hhh-------HHH--------HHHHHHHHHHC
Confidence 6899999999999999999999987 9999999753211 000 100 24556788889
Q ss_pred CcEEEcCCeEEEEeCCCCE-----EEcCCCcEEEeceEEEccCCCcc
Q 013890 86 GIELILSTEIVRADIASKT-----LLSATGLIFKYQILVIATGSTVL 127 (434)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~-----v~~~~~~~~~~d~lilAtG~~~~ 127 (434)
+++++.+..+..++...+. +...++..+.+|.+++++|.+|.
T Consensus 192 gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 192 GVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred CcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence 9999999999999976653 45667788999999999999984
No 312
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.04 E-value=2e-05 Score=77.82 Aligned_cols=99 Identities=12% Similarity=0.194 Sum_probs=71.5
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+..|..+++.|.+ |+++|+.+...- . + ...+ .....+.+++
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~---Vtlie~~~~il~-------~-~----d~~~-----------~~~l~~~l~~ 227 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQ---VTVVEYLDRICP-------G-T----DTET-----------AKTLQKALTK 227 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEeCCCCCCC-------C-C----CHHH-----------HHHHHHHHHh
Confidence 46899999999999999999999876 999998754210 0 0 0000 1234566778
Q ss_pred CCcEEEcCCeEEEEeCCCCE--EEcC-----CCcEEEeceEEEccCCCcccc
Q 013890 85 KGIELILSTEIVRADIASKT--LLSA-----TGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~-----~~~~~~~d~lilAtG~~~~~p 129 (434)
.|++++.++.+..+..+++. +.+. ++..+.+|.+++|+|..|...
T Consensus 228 ~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 279 (466)
T PRK06115 228 QGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQ 279 (466)
T ss_pred cCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccc
Confidence 89999999999998764433 2221 235799999999999988643
No 313
>PRK12831 putative oxidoreductase; Provisional
Probab=98.03 E-value=1.5e-05 Score=78.57 Aligned_cols=93 Identities=23% Similarity=0.253 Sum_probs=68.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC-------Ccc-cCHH-HHHHHHHHHHHcCcEEEcCCeEEEEE
Q 013890 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PRL-FTAD-IAAFYEGYYANKGIKIIKGTVAVGFT 232 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~-------~~~-~~~~-~~~~~~~~l~~~gV~~~~~~~v~~i~ 232 (434)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+.+. +.+ ++.+ +.....+.+++.||++++++.+..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~-- 216 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK-- 216 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC--
Confidence 47899999999999999999999999999998765431 110 2233 666667788899999999985521
Q ss_pred ecCCCcEEEEEeCCC-cEEEcCEEEEccCC-ccC
Q 013890 233 TNADGEVNEVKLKDG-RTLEADIVVVGVGG-RPL 264 (434)
Q Consensus 233 ~~~~g~~~~v~~~~g-~~i~~d~vv~a~G~-~p~ 264 (434)
.+.+++. +++.+|.|++|||. +|.
T Consensus 217 --------~v~~~~~~~~~~~d~viiAtGa~~~~ 242 (464)
T PRK12831 217 --------TVTIDELLEEEGFDAVFIGSGAGLPK 242 (464)
T ss_pred --------cCCHHHHHhccCCCEEEEeCCCCCCC
Confidence 1222332 24569999999997 454
No 314
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.02 E-value=9.2e-05 Score=69.82 Aligned_cols=38 Identities=26% Similarity=0.392 Sum_probs=34.8
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~ 44 (434)
+..||||||+|.+||++|.+|.+.|++ |+|+|..+...
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~---v~ilEar~r~G 43 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQ---VQILEARDRVG 43 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcE---EEEEeccCCcC
Confidence 468999999999999999999999998 99999998754
No 315
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.01 E-value=3.1e-05 Score=77.09 Aligned_cols=97 Identities=14% Similarity=0.120 Sum_probs=72.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHC
Q 013890 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
.+++|||||+.|+-.|..|++.|.+ |+++++....+. +. ..+ .....+.+++.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~---Vtli~~~~~l~~---------~d----~~~-----------~~~l~~~l~~~ 235 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFD---VTVAVRSIPLRG---------FD----RQC-----------SEKVVEYMKEQ 235 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCccccc---------CC----HHH-----------HHHHHHHHHHc
Confidence 5899999999999999999999876 999986421110 00 000 12445677888
Q ss_pred CcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCcccc
Q 013890 86 GIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~p 129 (434)
|++++.++.+..+..... .+.+.+++++.+|.+++|+|.+|...
T Consensus 236 GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~ 281 (499)
T PTZ00052 236 GTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIK 281 (499)
T ss_pred CCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCcc
Confidence 999999988887765333 35556778899999999999998754
No 316
>PRK13748 putative mercuric reductase; Provisional
Probab=98.01 E-value=2.6e-05 Score=79.21 Aligned_cols=98 Identities=17% Similarity=0.239 Sum_probs=71.5
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+-+|..|++.|.+ |+|+++....+. . ...+ .....+.+++
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtli~~~~~l~~---------~----d~~~-----------~~~l~~~l~~ 322 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSK---VTILARSTLFFR---------E----DPAI-----------GEAVTAAFRA 322 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCE---EEEEecCccccc---------c----CHHH-----------HHHHHHHHHH
Confidence 36899999999999999999999876 999998532110 0 0000 1234567788
Q ss_pred CCcEEEcCCeEEEEeCCCCEEEc-CCCcEEEeceEEEccCCCcccc
Q 013890 85 KGIELILSTEIVRADIASKTLLS-ATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~-~~~~~~~~d~lilAtG~~~~~p 129 (434)
.|++++.++.+..+..++..+.+ .++.++.+|.+++|+|..|...
T Consensus 323 ~gI~i~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~ 368 (561)
T PRK13748 323 EGIEVLEHTQASQVAHVDGEFVLTTGHGELRADKLLVATGRAPNTR 368 (561)
T ss_pred CCCEEEcCCEEEEEEecCCEEEEEecCCeEEeCEEEEccCCCcCCC
Confidence 99999999999998765544322 2234699999999999998754
No 317
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.01 E-value=2.6e-05 Score=76.68 Aligned_cols=99 Identities=19% Similarity=0.250 Sum_probs=72.3
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+-.|..|++.|.+ |+++++.+...- ... +.+ .....+.+++
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l~------------~~~---~~~--------~~~l~~~l~~ 211 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSK---VTILEAASLFLP------------RED---RDI--------ADNIATILRD 211 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCCC------------CcC---HHH--------HHHHHHHHHh
Confidence 35899999999999999999998876 999999753210 000 000 1234567788
Q ss_pred CCcEEEcCCeEEEEeCCCCEEEcC-CCcEEEeceEEEccCCCcccc
Q 013890 85 KGIELILSTEIVRADIASKTLLSA-TGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~-~~~~~~~d~lilAtG~~~~~p 129 (434)
.|++++.++.+.+++.++..+.+. ++.++.+|.+++|+|..|...
T Consensus 212 ~gV~v~~~~~v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G~~pn~~ 257 (441)
T PRK08010 212 QGVDIILNAHVERISHHENQVQVHSEHAQLAVDALLIASGRQPATA 257 (441)
T ss_pred CCCEEEeCCEEEEEEEcCCEEEEEEcCCeEEeCEEEEeecCCcCCC
Confidence 899999999999998665544332 234589999999999998753
No 318
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.01 E-value=0.00011 Score=71.46 Aligned_cols=99 Identities=31% Similarity=0.471 Sum_probs=75.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCC--CeEEEEeeCCccCCc-----------------------------------------
Q 013890 165 KAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPR----------------------------------------- 201 (434)
Q Consensus 165 ~vvVvG~g~~g~e~a~~l~~~g--~~v~~~~~~~~~~~~----------------------------------------- 201 (434)
.|+|||+|+.|+-+|..|++.| .+|+++++.+...+.
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~ 82 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDSR 82 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeCC
Confidence 6899999999999999999985 899999876421000
Q ss_pred ----------cc---------------CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 013890 202 ----------LF---------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVV 256 (434)
Q Consensus 202 ----------~~---------------~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv 256 (434)
.+ ...+.+.+.+.+.+.|++++.++++++++.++++ ..+.+++|+++.+|+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vI 160 (403)
T PRK07333 83 TSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEG--VTVTLSDGSVLEARLLV 160 (403)
T ss_pred CCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCE--EEEEECCCCEEEeCEEE
Confidence 00 0234556666777889999999999999863332 45778888899999999
Q ss_pred EccCCccCh
Q 013890 257 VGVGGRPLI 265 (434)
Q Consensus 257 ~a~G~~p~~ 265 (434)
.|.|.+...
T Consensus 161 ~AdG~~S~v 169 (403)
T PRK07333 161 AADGARSKL 169 (403)
T ss_pred EcCCCChHH
Confidence 999987654
No 319
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.01 E-value=3.3e-05 Score=75.95 Aligned_cols=98 Identities=21% Similarity=0.266 Sum_probs=70.4
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+..|..|++.|.+ |++|++.+.... .+. ..+ .....+. .+
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~---Vtli~~~~~ll~--------~~d----~~~-----------~~~l~~~-~~ 221 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTR---VTIVNRSTKLLR--------HLD----EDI-----------SDRFTEI-AK 221 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCc---EEEEEccCcccc--------ccC----HHH-----------HHHHHHH-Hh
Confidence 36899999999999999999998876 999998754210 000 000 0112222 34
Q ss_pred CCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCcccc
Q 013890 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~p 129 (434)
.+++++.++.+..++.+++ .+.+.+++++.+|.+++|+|.+|...
T Consensus 222 ~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~ 268 (452)
T TIGR03452 222 KKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGD 268 (452)
T ss_pred cCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCC
Confidence 6899999999999986554 34455677899999999999998653
No 320
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.01 E-value=7.6e-06 Score=81.62 Aligned_cols=58 Identities=24% Similarity=0.281 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCC----cEEEcCEEEEccCCcc
Q 013890 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG----RTLEADIVVVGVGGRP 263 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g----~~i~~d~vv~a~G~~p 263 (434)
+..+...+....++.|++++.++.|.++..+ +....+.+.++ .++.++.||.|+|...
T Consensus 154 ~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~--~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 154 DARLVVLNALDAAERGATILTRTRCVSARRE--GGLWRVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred HHHHHHHHHHHHHHCCCEEecCcEEEEEEEc--CCEEEEEEEeCCCCEEEEEecEEEECCCccH
Confidence 5667777778889999999999999999873 33345665554 3589999999999644
No 321
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.00 E-value=8.6e-05 Score=72.19 Aligned_cols=101 Identities=23% Similarity=0.361 Sum_probs=75.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc----------cCCc-------------------------c------
Q 013890 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW----------CMPR-------------------------L------ 202 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~----------~~~~-------------------------~------ 202 (434)
..|+|||+|+.|+-+|..|++.|.+|+++++.+. ..++ .
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 82 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEM 82 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeE
Confidence 3699999999999999999999999999997651 0000 0
Q ss_pred ------------cC---------------HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEE
Q 013890 203 ------------FT---------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIV 255 (434)
Q Consensus 203 ------------~~---------------~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~v 255 (434)
++ ..+.+.+.+.+++.|++++.++++.+++.++++ ..|.+.+|+++.+|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~g~~~~a~~v 160 (405)
T PRK05714 83 QVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDD--WLLTLADGRQLRAPLV 160 (405)
T ss_pred EEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEE
Confidence 00 012234445566779999999999999874444 4577888989999999
Q ss_pred EEccCCccChh
Q 013890 256 VVGVGGRPLIS 266 (434)
Q Consensus 256 v~a~G~~p~~~ 266 (434)
|.|.|......
T Consensus 161 VgAdG~~S~vR 171 (405)
T PRK05714 161 VAADGANSAVR 171 (405)
T ss_pred EEecCCCchhH
Confidence 99999876554
No 322
>PRK14727 putative mercuric reductase; Provisional
Probab=98.00 E-value=2.8e-05 Score=77.08 Aligned_cols=97 Identities=18% Similarity=0.267 Sum_probs=70.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHC
Q 013890 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
.+++|||+|+.|+-.|..+++.|.+ |+++++....+. +. +.. .....+.+++.
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~---Vtlv~~~~~l~~---------~d-------~~~--------~~~l~~~L~~~ 241 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSR---VTILARSTLLFR---------ED-------PLL--------GETLTACFEKE 241 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCE---EEEEEcCCCCCc---------ch-------HHH--------HHHHHHHHHhC
Confidence 6899999999999999999998876 999987532110 00 000 12345667788
Q ss_pred CcEEEcCCeEEEEeCCCCEEEc-CCCcEEEeceEEEccCCCcccc
Q 013890 86 GIELILSTEIVRADIASKTLLS-ATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~v~~-~~~~~~~~d~lilAtG~~~~~p 129 (434)
|++++.++.+..+..++..+.+ .++.++.+|.+++|+|..|...
T Consensus 242 GV~i~~~~~V~~i~~~~~~~~v~~~~g~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 242 GIEVLNNTQASLVEHDDNGFVLTTGHGELRAEKLLISTGRHANTH 286 (479)
T ss_pred CCEEEcCcEEEEEEEeCCEEEEEEcCCeEEeCEEEEccCCCCCcc
Confidence 9999999999988755443322 2334689999999999998654
No 323
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.00 E-value=8.4e-05 Score=72.82 Aligned_cols=66 Identities=12% Similarity=0.111 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecC-CCcEEEEEeCC-CcEEEcCEEEEccC-CccChhhhh
Q 013890 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNA-DGEVNEVKLKD-GRTLEADIVVVGVG-GRPLISLFK 269 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~-~g~~~~v~~~~-g~~i~~d~vv~a~G-~~p~~~~~~ 269 (434)
...+.+.+.+.+++.|++++++++++++..++ ++.+..+...+ +.++.++.||+|+| +..|.+++.
T Consensus 122 g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~~ 190 (432)
T TIGR02485 122 GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWLR 190 (432)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHHH
Confidence 35677888888999999999999999998643 56677766543 35789999999999 666666553
No 324
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.00 E-value=2.1e-05 Score=77.64 Aligned_cols=92 Identities=20% Similarity=0.235 Sum_probs=70.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC-------Cc-ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 013890 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~-------~~-~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~ 233 (434)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+.+. +. .++.++.+...+.+++.|++++.++.+...
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 217 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD-- 217 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc--
Confidence 46899999999999999999999999999998876542 11 146677777778899999999999876321
Q ss_pred cCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890 234 NADGEVNEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 234 ~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~ 264 (434)
+.+++ ....+|.||+|+|..+.
T Consensus 218 --------~~~~~-~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 218 --------ISLDD-LLEDYDAVFLGVGTYRS 239 (467)
T ss_pred --------cCHHH-HHhcCCEEEEEeCCCCC
Confidence 11111 12469999999998764
No 325
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.99 E-value=0.0001 Score=71.11 Aligned_cols=98 Identities=22% Similarity=0.337 Sum_probs=73.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCC-CeEEEEeeCCccCCc--------cc--------------------------------
Q 013890 165 KAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWCMPR--------LF-------------------------------- 203 (434)
Q Consensus 165 ~vvVvG~g~~g~e~a~~l~~~g-~~v~~~~~~~~~~~~--------~~-------------------------------- 203 (434)
.|+|||+|+.|+-+|..|++.| .+|+++++.+..-.. .+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 3799999999999999999999 999999876432110 00
Q ss_pred -----------------------CHHHHHHHHHHHHH-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEcc
Q 013890 204 -----------------------TADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGV 259 (434)
Q Consensus 204 -----------------------~~~~~~~~~~~l~~-~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~ 259 (434)
..++.+.+.+.+.+ .|++++.+++++++..++++ ..+.+++|+++.+|+||.|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vV~Ad 158 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY--VRVTLDNGQQLRAKLLIAAD 158 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe--EEEEECCCCEEEeeEEEEec
Confidence 01234445555566 49999999999999864443 45777888889999999999
Q ss_pred CCccC
Q 013890 260 GGRPL 264 (434)
Q Consensus 260 G~~p~ 264 (434)
|....
T Consensus 159 G~~S~ 163 (382)
T TIGR01984 159 GANSK 163 (382)
T ss_pred CCChH
Confidence 97654
No 326
>PRK07208 hypothetical protein; Provisional
Probab=97.99 E-value=9.1e-06 Score=80.84 Aligned_cols=58 Identities=24% Similarity=0.327 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe--CCCc--EEEcCEEEEccCCc
Q 013890 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL--KDGR--TLEADIVVVGVGGR 262 (434)
Q Consensus 205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~--~~g~--~i~~d~vv~a~G~~ 262 (434)
..+.+.+.+.+++.|++++++++|++|..++++.+..+.. .+|+ ++.+|.||+++...
T Consensus 218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~ 279 (479)
T PRK07208 218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLR 279 (479)
T ss_pred chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHH
Confidence 4577888888999999999999999998855554444443 2453 58899999998853
No 327
>PRK07588 hypothetical protein; Provisional
Probab=97.98 E-value=0.0001 Score=71.34 Aligned_cols=99 Identities=18% Similarity=0.217 Sum_probs=72.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc------------------------------------------
Q 013890 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------------------------------------------ 202 (434)
Q Consensus 165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~------------------------------------------ 202 (434)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+....
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRRK 81 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCEE
Confidence 68999999999999999999999999998765431100
Q ss_pred --cC-----------------HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890 203 --FT-----------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 203 --~~-----------------~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p 263 (434)
++ .++.+.+.+.+ ..|+++++++++++++.++++ ..+.+++|+++.+|+||-|-|.+.
T Consensus 82 ~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 82 ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEHRDG--VRVTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred EEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEECCCe--EEEEECCCCEEEeCEEEECCCCCc
Confidence 00 01122222223 347999999999999874333 457888999999999999999876
Q ss_pred Chh
Q 013890 264 LIS 266 (434)
Q Consensus 264 ~~~ 266 (434)
.+.
T Consensus 159 ~vR 161 (391)
T PRK07588 159 HVR 161 (391)
T ss_pred cch
Confidence 654
No 328
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.97 E-value=2.7e-05 Score=76.35 Aligned_cols=92 Identities=16% Similarity=0.174 Sum_probs=66.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHH--CCCeEEEEeeCCccCCcc---------cCHHHHHHHHHHHHHcCcEEEcCCeEEE
Q 013890 162 KNGKAVVVGGGYIGLELSAALKI--NNIDVSMVYPEPWCMPRL---------FTADIAAFYEGYYANKGIKIIKGTVAVG 230 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~l~~--~g~~v~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~gV~~~~~~~v~~ 230 (434)
.+++|+|||+|+.|+.+|..|.+ .|.+|+++++.+.+.... ....+...+.+.+.+.+|+++.+..+.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg- 103 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLG- 103 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEEC-
Confidence 46899999999999999999987 799999999988654211 112344556677788899999875542
Q ss_pred EEecCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890 231 FTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 231 i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~ 264 (434)
..+.+++-. ..+|.||+|+|..+.
T Consensus 104 ---------~dvtl~~L~-~~yDaVIlAtGa~~~ 127 (491)
T PLN02852 104 ---------RDVSLSELR-DLYHVVVLAYGAESD 127 (491)
T ss_pred ---------ccccHHHHh-hhCCEEEEecCCCCC
Confidence 123333332 368999999998753
No 329
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.97 E-value=3.6e-05 Score=76.27 Aligned_cols=97 Identities=12% Similarity=0.160 Sum_probs=69.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHC
Q 013890 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
.+++|||||+.|+-+|..|++.|.+ |+++++....+. + ...+ .....+.+++.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~---Vtli~~~~~l~~---------~----d~~~-----------~~~l~~~L~~~ 233 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLD---VTVMVRSILLRG---------F----DQDC-----------ANKVGEHMEEH 233 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCc---EEEEEecccccc---------c----CHHH-----------HHHHHHHHHHc
Confidence 5799999999999999999999876 999987421110 0 0000 12345677888
Q ss_pred CcEEEcCCeEEEEeCCCC--EEEcCCC---cEEEeceEEEccCCCcccc
Q 013890 86 GIELILSTEIVRADIASK--TLLSATG---LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~--~v~~~~~---~~~~~d~lilAtG~~~~~p 129 (434)
|++++.++.+..+...+. .+...++ .++.+|.+++|+|..|...
T Consensus 234 gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~ 282 (484)
T TIGR01438 234 GVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTR 282 (484)
T ss_pred CCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCC
Confidence 999999988877765433 3444444 3799999999999988653
No 330
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.97 E-value=4.5e-06 Score=77.66 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 013890 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~ 261 (434)
..++..+.+-+++.|-++.+.++|++|.. ++|++.+|.++||+++.+..|+..++.
T Consensus 264 Gavs~aia~~~~~~GaeI~tka~Vq~Ill-d~gka~GV~L~dG~ev~sk~VvSNAt~ 319 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAGAEIFTKATVQSILL-DSGKAVGVRLADGTEVRSKIVVSNATP 319 (561)
T ss_pred hHHHHHHHHHHHhccceeeehhhhhheec-cCCeEEEEEecCCcEEEeeeeecCCch
Confidence 46788889999999999999999999987 459999999999999999888886664
No 331
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.96 E-value=3.3e-05 Score=76.35 Aligned_cols=99 Identities=15% Similarity=0.264 Sum_probs=71.5
Q ss_pred cCcEEEECCCHHHHHHHHHHHHc---CCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQ---GVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEW 81 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~---g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (434)
..+++|||||+.|+-+|..+... |.+ |+|+++.+..... + ...+ .....+.
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~---Vtli~~~~~il~~--------~----d~~~-----------~~~l~~~ 240 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGK---VTLCYRNNMILRG--------F----DSTL-----------RKELTKQ 240 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCe---EEEEecCCccccc--------c----CHHH-----------HHHHHHH
Confidence 36899999999999999776654 554 9999988642100 0 0000 1234566
Q ss_pred HHHCCcEEEcCCeEEEEeCCC---CEEEcCCCcEEEeceEEEccCCCcccc
Q 013890 82 YKEKGIELILSTEIVRADIAS---KTLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 82 ~~~~~v~~~~~~~v~~i~~~~---~~v~~~~~~~~~~d~lilAtG~~~~~p 129 (434)
+++.|++++.++.+..+..+. ..+.+.++.++.+|.+++|+|.+|...
T Consensus 241 L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 241 LRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred HHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcc
Confidence 778999999999999887542 245566777899999999999998654
No 332
>PLN02568 polyamine oxidase
Probab=97.95 E-value=1.1e-05 Score=80.48 Aligned_cols=44 Identities=23% Similarity=0.263 Sum_probs=36.8
Q ss_pred CCCCcCcEEEECCCHHHHHHHHHHHHcCC--CCCcEEEEeCCCCCC
Q 013890 1 MAEKSFKYVILGGGVSAGYAAREFAKQGV--KPGELAIISKEAVAP 44 (434)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~--~~~~V~vie~~~~~~ 44 (434)
||++.+||+|||||++||+||..|++.|. +..+|+|+|+....+
T Consensus 1 ~~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~G 46 (539)
T PLN02568 1 MVAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIG 46 (539)
T ss_pred CCCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcC
Confidence 88888999999999999999999998871 112399999998743
No 333
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.94 E-value=4.1e-05 Score=75.72 Aligned_cols=98 Identities=12% Similarity=0.232 Sum_probs=71.0
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... + .+ ...+ .....+.+++
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l---~-----~~----d~~~-----------~~~~~~~l~~ 222 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVK---VTVFERGDRIL---P-----LE----DPEV-----------SKQAQKILSK 222 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCcC---c-----ch----hHHH-----------HHHHHHHHhh
Confidence 46899999999999999999999876 99999885421 0 00 0000 1233456667
Q ss_pred CCcEEEcCCeEEEEeCCCC-EEEc----CCCcEEEeceEEEccCCCcccc
Q 013890 85 KGIELILSTEIVRADIASK-TLLS----ATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~-~v~~----~~~~~~~~d~lilAtG~~~~~p 129 (434)
. ++++.++.+..++.+++ .+.+ .++.++.+|.+++|+|..|...
T Consensus 223 ~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~ 271 (460)
T PRK06292 223 E-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTD 271 (460)
T ss_pred c-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCC
Confidence 7 99999999999876543 3432 2335799999999999998765
No 334
>PRK06184 hypothetical protein; Provisional
Probab=97.94 E-value=0.00014 Score=72.85 Aligned_cols=100 Identities=24% Similarity=0.394 Sum_probs=74.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc----------------------------------c-------
Q 013890 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------L------- 202 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~----------------------------------~------- 202 (434)
..|+|||+|+.|+-+|..|++.|.+|+++++.+.+... .
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 83 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGSV 83 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCceE
Confidence 47999999999999999999999999999876432100 0
Q ss_pred ----------------------cC-HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCcEEEcCEEE
Q 013890 203 ----------------------FT-ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL---KDGRTLEADIVV 256 (434)
Q Consensus 203 ----------------------~~-~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~---~~g~~i~~d~vv 256 (434)
++ ..+.+.+.+.+.+.|+++++++++.+++.++++. .+.+ .+++++.+|.||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v--~v~~~~~~~~~~i~a~~vV 161 (502)
T PRK06184 84 AESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGV--TARVAGPAGEETVRARYLV 161 (502)
T ss_pred EEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcE--EEEEEeCCCeEEEEeCEEE
Confidence 00 1133456667777899999999999998744442 3444 556789999999
Q ss_pred EccCCccCh
Q 013890 257 VGVGGRPLI 265 (434)
Q Consensus 257 ~a~G~~p~~ 265 (434)
.|.|.+...
T Consensus 162 gADG~~S~v 170 (502)
T PRK06184 162 GADGGRSFV 170 (502)
T ss_pred ECCCCchHH
Confidence 999976543
No 335
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.94 E-value=0.00015 Score=69.88 Aligned_cols=99 Identities=21% Similarity=0.357 Sum_probs=74.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCC-------c--ccC-------------------------------
Q 013890 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------R--LFT------------------------------- 204 (434)
Q Consensus 165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~-------~--~~~------------------------------- 204 (434)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+-. + .+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 379999999999999999999999999988753200 0 000
Q ss_pred -------------------------HHHHHHHHHHHHHcC-cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEc
Q 013890 205 -------------------------ADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVG 258 (434)
Q Consensus 205 -------------------------~~~~~~~~~~l~~~g-V~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a 258 (434)
..+.+.+.+.+.+.| ++++.+++|++++.++ +. ..+.+++|+++.+|+||.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~-~~-~~v~~~~g~~~~~~~vi~a 158 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHS-DH-VELTLDDGQQLRARLLVGA 158 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecC-Ce-eEEEECCCCEEEeeEEEEe
Confidence 123344555566667 9999999999998633 33 4578889989999999999
Q ss_pred cCCccCh
Q 013890 259 VGGRPLI 265 (434)
Q Consensus 259 ~G~~p~~ 265 (434)
.|.....
T Consensus 159 dG~~S~v 165 (385)
T TIGR01988 159 DGANSKV 165 (385)
T ss_pred CCCCCHH
Confidence 9976554
No 336
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.94 E-value=0.00024 Score=60.54 Aligned_cols=110 Identities=19% Similarity=0.220 Sum_probs=73.2
Q ss_pred HHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc------cC-------------------------
Q 013890 156 EAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------FT------------------------- 204 (434)
Q Consensus 156 ~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~------~~------------------------- 204 (434)
+.+.+.....++|||+|++|+-+|..|++.|.+|.++++...+.... |+
T Consensus 10 ~~l~~~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g 89 (230)
T PF01946_consen 10 EDLYDYLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDG 89 (230)
T ss_dssp HHHHHHTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSE
T ss_pred HHHHhhccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCe
Confidence 33333356789999999999999999999999999999875443211 11
Q ss_pred ------HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC-----------CCcEEEcCEEEEccCCccCh
Q 013890 205 ------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK-----------DGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 205 ------~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~-----------~g~~i~~d~vv~a~G~~p~~ 265 (434)
.+....+....-+.|++++..+.++.+-..+++++.++..+ |.-.+++..||-|||.....
T Consensus 90 ~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v 167 (230)
T PF01946_consen 90 YYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEV 167 (230)
T ss_dssp EEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSS
T ss_pred EEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHH
Confidence 12333444445568999999999999865444788877663 22479999999999976654
No 337
>PRK09126 hypothetical protein; Provisional
Probab=97.93 E-value=0.00016 Score=69.94 Aligned_cols=101 Identities=27% Similarity=0.395 Sum_probs=73.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC-------Cc-----------------------------------
Q 013890 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR----------------------------------- 201 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~-------~~----------------------------------- 201 (434)
-+|+|||+|+.|+-+|..|++.|.+|+++++.+.+- ..
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~ 83 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKVL 83 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEEE
Confidence 469999999999999999999999999998765310 00
Q ss_pred --------ccC---------------HHHHHHHHHHH-HHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 013890 202 --------LFT---------------ADIAAFYEGYY-ANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVV 257 (434)
Q Consensus 202 --------~~~---------------~~~~~~~~~~l-~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~ 257 (434)
.++ ..+.+.+.+.+ +..|++++.++++++++.++++ ..|.+++|+++.+|+||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~a~~vI~ 161 (392)
T PRK09126 84 NGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG--AQVTLANGRRLTARLLVA 161 (392)
T ss_pred cCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe--EEEEEcCCCEEEeCEEEE
Confidence 000 01222233333 3468999999999999863333 457788899999999999
Q ss_pred ccCCccChh
Q 013890 258 GVGGRPLIS 266 (434)
Q Consensus 258 a~G~~p~~~ 266 (434)
|.|..+...
T Consensus 162 AdG~~S~vr 170 (392)
T PRK09126 162 ADSRFSATR 170 (392)
T ss_pred eCCCCchhh
Confidence 999877654
No 338
>PRK05868 hypothetical protein; Validated
Probab=97.93 E-value=9.7e-05 Score=70.82 Aligned_cols=101 Identities=16% Similarity=0.150 Sum_probs=73.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc--c--cCH-------------H--------------------
Q 013890 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--L--FTA-------------D-------------------- 206 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~--~--~~~-------------~-------------------- 206 (434)
++|+|||+|+.|+-+|..|++.|.+|+++++.+.+... . +.+ .
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 47999999999999999999999999999877543110 0 000 0
Q ss_pred ---------------------HHHHHHHHHH---HcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890 207 ---------------------IAAFYEGYYA---NKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 207 ---------------------~~~~~~~~l~---~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~ 262 (434)
....+.+.+. ..|+++++++++++++.++++ ..+.+++|+++.+|+||-|-|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~--v~v~~~dg~~~~adlvIgADG~~ 159 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDS--VRVTFERAAAREFDLVIGADGLH 159 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCe--EEEEECCCCeEEeCEEEECCCCC
Confidence 0112222222 358999999999999763332 46888999999999999999987
Q ss_pred cChh
Q 013890 263 PLIS 266 (434)
Q Consensus 263 p~~~ 266 (434)
....
T Consensus 160 S~vR 163 (372)
T PRK05868 160 SNVR 163 (372)
T ss_pred chHH
Confidence 7664
No 339
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.92 E-value=3.3e-05 Score=72.87 Aligned_cols=101 Identities=17% Similarity=0.237 Sum_probs=79.3
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
...||++|+|..|+-+|..|.....+ |++|++++.+- ..++.+ ...+.+.+++++
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~---VT~V~~e~~~~-------~~lf~~---------------~i~~~~~~y~e~ 267 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKS---VTVVFPEPWLL-------PRLFGP---------------SIGQFYEDYYEN 267 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCce---EEEEccCccch-------hhhhhH---------------HHHHHHHHHHHh
Confidence 45799999999999999999998766 99999996521 111111 112456788999
Q ss_pred CCcEEEcCCeEEEEeCCC--C--EEEcCCCcEEEeceEEEccCCCccccc
Q 013890 85 KGIELILSTEIVRADIAS--K--TLLSATGLIFKYQILVIATGSTVLRLT 130 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~--~--~v~~~~~~~~~~d~lilAtG~~~~~p~ 130 (434)
.+++++.++.+.++.... + .|.+.++.++.+|-||+.+|++|....
T Consensus 268 kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~ 317 (478)
T KOG1336|consen 268 KGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSF 317 (478)
T ss_pred cCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccccc
Confidence 999999999888877544 2 467789999999999999999998765
No 340
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.92 E-value=0.00018 Score=70.26 Aligned_cols=98 Identities=21% Similarity=0.315 Sum_probs=72.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc--------------cc--------------------------
Q 013890 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------------LF-------------------------- 203 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~--------------~~-------------------------- 203 (434)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+.+... .+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSA 85 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCCc
Confidence 47999999999999999999999999999876421100 00
Q ss_pred ---------------------CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890 204 ---------------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 204 ---------------------~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~ 262 (434)
...+.+.+.+.+++.|++++.++.|+++..+ ++.+..+. .+|.++.+|.||.|.|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~-~~g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 86 MTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVE-ADGDVIEAKTVILADGVN 163 (428)
T ss_pred eeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEE-cCCcEEECCEEEEEeCCC
Confidence 0112345666677889999999999998763 45544444 566789999999999975
Q ss_pred c
Q 013890 263 P 263 (434)
Q Consensus 263 p 263 (434)
.
T Consensus 164 s 164 (428)
T PRK10157 164 S 164 (428)
T ss_pred H
Confidence 4
No 341
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.92 E-value=2.9e-05 Score=81.32 Aligned_cols=94 Identities=16% Similarity=0.208 Sum_probs=70.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC-------Cc-ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 013890 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~-------~~-~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~ 233 (434)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+.+. +. -++.++.+...+.+++.||+++.++.+.
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~---- 505 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVG---- 505 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEC----
Confidence 46789999999999999999999999999999764321 11 1356677777778889999999987541
Q ss_pred cCCCcEEEEEeCCCcEEEcCEEEEccCC-ccCh
Q 013890 234 NADGEVNEVKLKDGRTLEADIVVVGVGG-RPLI 265 (434)
Q Consensus 234 ~~~g~~~~v~~~~g~~i~~d~vv~a~G~-~p~~ 265 (434)
..+.+++.....+|.||+|+|. .|..
T Consensus 506 ------~~v~~~~l~~~~ydavvlAtGa~~~~~ 532 (752)
T PRK12778 506 ------KTITIEELEEEGFKGIFIASGAGLPNF 532 (752)
T ss_pred ------CcCCHHHHhhcCCCEEEEeCCCCCCCC
Confidence 1233344345669999999997 4543
No 342
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.91 E-value=0.00019 Score=69.36 Aligned_cols=99 Identities=26% Similarity=0.365 Sum_probs=75.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc---------cc-------------------------------
Q 013890 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR---------LF------------------------------- 203 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~---------~~------------------------------- 203 (434)
.+|+|||+|+.|+-+|..|.+.|.+|+++++.+..... .+
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 85 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVF 85 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEE
Confidence 47999999999999999999999999999877543110 00
Q ss_pred ------------------------CHHHHHHHHHHHHHcC-cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEc
Q 013890 204 ------------------------TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVG 258 (434)
Q Consensus 204 ------------------------~~~~~~~~~~~l~~~g-V~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a 258 (434)
...+.+.+.+.+++.| ++++ +.++++++..+++ ..+.+.+|+++.+|.||.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~a 162 (388)
T PRK07608 86 GDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDA--ATLTLADGQVLRADLVVGA 162 (388)
T ss_pred ECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCe--EEEEECCCCEEEeeEEEEe
Confidence 1123445556677777 9998 8889998763333 4578888888999999999
Q ss_pred cCCccCh
Q 013890 259 VGGRPLI 265 (434)
Q Consensus 259 ~G~~p~~ 265 (434)
.|.....
T Consensus 163 dG~~S~v 169 (388)
T PRK07608 163 DGAHSWV 169 (388)
T ss_pred CCCCchH
Confidence 9987654
No 343
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.91 E-value=1.3e-05 Score=79.83 Aligned_cols=58 Identities=26% Similarity=0.361 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCC---Cc--EEEcCEEEEccCCcc
Q 013890 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKD---GR--TLEADIVVVGVGGRP 263 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~---g~--~i~~d~vv~a~G~~p 263 (434)
+..+...+.+..++.|++++.+++|.++..+ ++ ...+.+.+ |+ ++.++.||.|+|...
T Consensus 154 ~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~-~~-~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 154 DARLVVLNARDAAERGAEILTRTRVVSARRE-NG-LWHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEe-CC-EEEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 4566677777788999999999999999763 33 23455443 43 689999999999644
No 344
>PTZ00058 glutathione reductase; Provisional
Probab=97.90 E-value=6e-05 Score=75.58 Aligned_cols=99 Identities=12% Similarity=0.111 Sum_probs=71.6
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+-.|..+++.|.+ |+++++.+... + .+ ...+ .....+.+++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~---Vtli~~~~~il---~-----~~----d~~i-----------~~~l~~~L~~ 290 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAE---SYIFARGNRLL---R-----KF----DETI-----------INELENDMKK 290 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCc---EEEEEeccccc---c-----cC----CHHH-----------HHHHHHHHHH
Confidence 46899999999999999999999876 99999875311 0 00 0000 1234566778
Q ss_pred CCcEEEcCCeEEEEeCCCC---EEEcCC-CcEEEeceEEEccCCCcccc
Q 013890 85 KGIELILSTEIVRADIASK---TLLSAT-GLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~---~v~~~~-~~~~~~d~lilAtG~~~~~p 129 (434)
.|++++.+..+..++.+.. .+...+ ++++.+|.+++|+|.+|...
T Consensus 291 ~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~ 339 (561)
T PTZ00058 291 NNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTE 339 (561)
T ss_pred CCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCcc
Confidence 8999999999999875432 233333 35799999999999888643
No 345
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.89 E-value=4.2e-05 Score=75.78 Aligned_cols=90 Identities=23% Similarity=0.262 Sum_probs=68.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC-------Cc-ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 013890 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~-------~~-~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~ 233 (434)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+.+. +. .++.++.....+.+++.||+++.++.+.. ..
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~-~~ 220 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGV-DI 220 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCC-cc
Confidence 35799999999999999999999999999999877542 11 13556777777888999999999987631 10
Q ss_pred cCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890 234 NADGEVNEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 234 ~~~g~~~~v~~~~g~~i~~d~vv~a~G~~ 262 (434)
. .+.....+|.|++|+|..
T Consensus 221 ---------~-~~~~~~~~d~VilAtGa~ 239 (485)
T TIGR01317 221 ---------S-ADELKEQFDAVVLAGGAT 239 (485)
T ss_pred ---------C-HHHHHhhCCEEEEccCCC
Confidence 0 011135689999999987
No 346
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.89 E-value=6.6e-05 Score=74.66 Aligned_cols=81 Identities=22% Similarity=0.203 Sum_probs=64.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEE
Q 013890 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNE 241 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~ 241 (434)
.+++++|+|+|.+|+++|..|.+.|.+|+++++.+. +....+.+.+++.||+++.+..+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~--------~~~~~~~~~l~~~gv~~~~~~~~~------------ 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD--------ERHRALAAILEALGATVRLGPGPT------------ 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch--------hhhHHHHHHHHHcCCEEEECCCcc------------
Confidence 478999999999999999999999999999986532 233455667888899998775432
Q ss_pred EEeCCCcEEEcCEEEEccCCccChhhh
Q 013890 242 VKLKDGRTLEADIVVVGVGGRPLISLF 268 (434)
Q Consensus 242 v~~~~g~~i~~d~vv~a~G~~p~~~~~ 268 (434)
....+|+||+++|..|+.+++
T Consensus 75 ------~~~~~D~Vv~s~Gi~~~~~~~ 95 (480)
T PRK01438 75 ------LPEDTDLVVTSPGWRPDAPLL 95 (480)
T ss_pred ------ccCCCCEEEECCCcCCCCHHH
Confidence 024589999999999999865
No 347
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.89 E-value=5.7e-05 Score=79.73 Aligned_cols=90 Identities=14% Similarity=0.111 Sum_probs=66.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc--------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEec
Q 013890 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 234 (434)
Q Consensus 163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~ 234 (434)
+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+... ..+.+..+...+.+.+.||+++.+... .
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~-d---- 611 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSP-D---- 611 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEeccc-c----
Confidence 578999999999999999999999999999987643221 124556666667788899999987421 1
Q ss_pred CCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890 235 ADGEVNEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 235 ~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~ 264 (434)
+.+.+.+...+|.|++|||.++.
T Consensus 612 -------~~ve~l~~~gYDaVIIATGA~~~ 634 (1012)
T TIGR03315 612 -------LTVAELKNQGYKYVILAIGAWKH 634 (1012)
T ss_pred -------eEhhhhhcccccEEEECCCCCCC
Confidence 11222234568999999998754
No 348
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.89 E-value=0.00013 Score=69.26 Aligned_cols=102 Identities=28% Similarity=0.394 Sum_probs=73.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc------------------------------------------
Q 013890 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------------------------------------------ 202 (434)
Q Consensus 165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~------------------------------------------ 202 (434)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+....
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~ 82 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD 82 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence 68999999999999999999999999999874431100
Q ss_pred -------------------------c-CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC-CCc--EEEcC
Q 013890 203 -------------------------F-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK-DGR--TLEAD 253 (434)
Q Consensus 203 -------------------------~-~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~-~g~--~i~~d 253 (434)
+ ...+.+.+.+.+++.|+++++++++..+..+.++....+... +|+ ++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~ad 162 (356)
T PF01494_consen 83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEAD 162 (356)
T ss_dssp SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEES
T ss_pred ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEe
Confidence 0 024666777788888999999999999987555533333333 343 68999
Q ss_pred EEEEccCCccChh
Q 013890 254 IVVVGVGGRPLIS 266 (434)
Q Consensus 254 ~vv~a~G~~p~~~ 266 (434)
+||-|-|.+..+.
T Consensus 163 lvVgADG~~S~vR 175 (356)
T PF01494_consen 163 LVVGADGAHSKVR 175 (356)
T ss_dssp EEEE-SGTT-HHH
T ss_pred eeecccCcccchh
Confidence 9999999877654
No 349
>PLN02697 lycopene epsilon cyclase
Probab=97.88 E-value=0.0002 Score=71.19 Aligned_cols=98 Identities=20% Similarity=0.262 Sum_probs=71.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc-----------------------------------------
Q 013890 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL----------------------------------------- 202 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~----------------------------------------- 202 (434)
-.++|||+|+.|+-+|..+++.|.+|.++++...+....
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~ 188 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR 188 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence 479999999999999999999999999998643221110
Q ss_pred c-CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890 203 F-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 203 ~-~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p 263 (434)
+ ...+.+.+.+.+.+.|+++ .++.|+++...+++ ...+.+.+|.++.++.||.|+|..+
T Consensus 189 V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~-~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 189 VSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDG-LRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred EcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCc-EEEEEEcCCcEEECCEEEECCCcCh
Confidence 0 0123355566667789998 57789998763333 3334567888999999999999866
No 350
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.88 E-value=0.00016 Score=70.90 Aligned_cols=73 Identities=16% Similarity=0.226 Sum_probs=57.7
Q ss_pred CCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890 186 NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 186 g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p 263 (434)
+..-.+..+.+..+. +..+.+.+....++.|..++.++.|+++... ++...+|.+..| .+++..+|-|+|+..
T Consensus 171 ~v~g~Ly~P~DG~~D---P~~lC~ala~~A~~~GA~viE~cpV~~i~~~-~~~~~gVeT~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 171 DVYGGLYSPGDGVMD---PAGLCQALARAASALGALVIENCPVTGLHVE-TDKFGGVETPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred HheeeeecCCCcccC---HHHHHHHHHHHHHhcCcEEEecCCcceEEee-cCCccceeccCc-ceecceEEechhHHH
Confidence 334456666665543 5678889999999999999999999999874 444458999888 699999999999755
No 351
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.87 E-value=0.00015 Score=72.28 Aligned_cols=96 Identities=20% Similarity=0.199 Sum_probs=69.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC-ccC--C--c---------------cc--------------------
Q 013890 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP-WCM--P--R---------------LF-------------------- 203 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~-~~~--~--~---------------~~-------------------- 203 (434)
-.|+|||+|+.|+++|..+++.|.+|.++++.. .+. + . .+
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~ 84 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNT 84 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeeccc
Confidence 369999999999999999999999999998763 110 0 0 00
Q ss_pred -------------CH-HHHHHHHHHHHHc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 013890 204 -------------TA-DIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 204 -------------~~-~~~~~~~~~l~~~-gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~ 261 (434)
|. .+...+.+.+.+. |++++ ...+.++.. +++.+.+|.+.+|..+.|+.||+|+|.
T Consensus 85 skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~-e~grV~GV~t~dG~~I~Ak~VIlATGT 155 (618)
T PRK05192 85 SKGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIV-ENGRVVGVVTQDGLEFRAKAVVLTTGT 155 (618)
T ss_pred CCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEe-cCCEEEEEEECCCCEEECCEEEEeeCc
Confidence 00 1123344445444 78876 456777765 467788899999999999999999993
No 352
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.87 E-value=1.8e-05 Score=77.75 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=34.9
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~ 44 (434)
++++|||||||+|||+||++|.+.|++ |+|+|..+..+
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~---V~VLEARdRvG 51 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFD---VLVLEARDRVG 51 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCc---eEEEeccCCcC
Confidence 467999999999999999999999998 99999998754
No 353
>PRK06753 hypothetical protein; Provisional
Probab=97.85 E-value=0.00015 Score=69.56 Aligned_cols=100 Identities=15% Similarity=0.178 Sum_probs=71.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc----ccCHHH---------------------------------
Q 013890 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----LFTADI--------------------------------- 207 (434)
Q Consensus 165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~----~~~~~~--------------------------------- 207 (434)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+... .+.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~ 81 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL 81 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence 6899999999999999999999999999987643110 000000
Q ss_pred ---------------HHHHHHHHHH--cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChh
Q 013890 208 ---------------AAFYEGYYAN--KGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 208 ---------------~~~~~~~l~~--~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~ 266 (434)
...+.+.|.+ .+.++++++++++++.+ ++. ..+++++|+++.+|+||-|-|.+..+.
T Consensus 82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~-~~~-v~v~~~~g~~~~~~~vigadG~~S~vR 155 (373)
T PRK06753 82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENE-TDK-VTIHFADGESEAFDLCIGADGIHSKVR 155 (373)
T ss_pred eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEec-CCc-EEEEECCCCEEecCEEEECCCcchHHH
Confidence 0112222222 24578899999999863 333 467888999999999999999876664
No 354
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.85 E-value=0.00024 Score=69.34 Aligned_cols=102 Identities=24% Similarity=0.357 Sum_probs=71.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC----Cc--ccC--------------------------------
Q 013890 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM----PR--LFT-------------------------------- 204 (434)
Q Consensus 163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~----~~--~~~-------------------------------- 204 (434)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+- +. .+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 97 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD 97 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence 3579999999999999999999999999998765321 00 000
Q ss_pred -----------------------HHHHHHHHHHHHHc-CcEEEcCCeEEEEEecCCCcEEEEEeCC--C-cEEEcCEEEE
Q 013890 205 -----------------------ADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVNEVKLKD--G-RTLEADIVVV 257 (434)
Q Consensus 205 -----------------------~~~~~~~~~~l~~~-gV~~~~~~~v~~i~~~~~g~~~~v~~~~--g-~~i~~d~vv~ 257 (434)
..+.+.+.+.+.+. ||++++++++++++.++++ ..+.+.+ + .++.+|+||.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~--~~v~~~~~~~~~~i~adlvIg 175 (415)
T PRK07364 98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA--ATVTLEIEGKQQTLQSKLVVA 175 (415)
T ss_pred CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--eEEEEccCCcceEEeeeEEEE
Confidence 11223333444443 7999999999999764443 3455553 2 3699999999
Q ss_pred ccCCccChh
Q 013890 258 GVGGRPLIS 266 (434)
Q Consensus 258 a~G~~p~~~ 266 (434)
|.|......
T Consensus 176 ADG~~S~vR 184 (415)
T PRK07364 176 ADGARSPIR 184 (415)
T ss_pred eCCCCchhH
Confidence 999877654
No 355
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.84 E-value=0.00054 Score=66.98 Aligned_cols=137 Identities=26% Similarity=0.310 Sum_probs=91.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCe-EEEEeeCCccCCc---------------------c--c------C--HHHHHH
Q 013890 163 NGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPWCMPR---------------------L--F------T--ADIAAF 210 (434)
Q Consensus 163 ~~~vvVvG~g~~g~e~a~~l~~~g~~-v~~~~~~~~~~~~---------------------~--~------~--~~~~~~ 210 (434)
-.+++|||+|++|+-+|..|.+.|.. +.++++.+.+... + + + ..+.+.
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y 87 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDY 87 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHH
Confidence 45899999999999999999999998 9999887533211 0 1 0 126778
Q ss_pred HHHHHHHcCcEE--EcCCeEEEEEecCCCcEEEEEeCCCcE--EEcCEEEEccCC--ccChhhhhccccccCCcEEeCC-
Q 013890 211 YEGYYANKGIKI--IKGTVAVGFTTNADGEVNEVKLKDGRT--LEADIVVVGVGG--RPLISLFKGQVAENKGGIETDD- 283 (434)
Q Consensus 211 ~~~~l~~~gV~~--~~~~~v~~i~~~~~g~~~~v~~~~g~~--i~~d~vv~a~G~--~p~~~~~~~~~~~~~g~i~vd~- 283 (434)
+...+++.++.. ..++.|..+..++++....|+++++.+ +.+|.||+|||. .|+..-+. +...-.|.+.--.
T Consensus 88 ~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~-G~~~f~g~~~HS~~ 166 (443)
T COG2072 88 IKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFA-GLDEFKGRILHSAD 166 (443)
T ss_pred HHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCC-CccCCCceEEchhc
Confidence 888888877654 445666667666677778899988866 459999999995 33333221 2222233333221
Q ss_pred ---CCCCCCCceEEeccccc
Q 013890 284 ---FFKTSADDVYAVGDVAT 300 (434)
Q Consensus 284 ---~~~t~~~~iya~Gd~~~ 300 (434)
.....-++|-++|--++
T Consensus 167 ~~~~~~~~GKrV~VIG~GaS 186 (443)
T COG2072 167 WPNPEDLRGKRVLVIGAGAS 186 (443)
T ss_pred CCCccccCCCeEEEECCCcc
Confidence 22234577888886655
No 356
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.84 E-value=9.4e-05 Score=66.47 Aligned_cols=36 Identities=25% Similarity=0.444 Sum_probs=33.5
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
..+||+|||+|.|||.||.+|+..|.+ |+++|++..
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~---V~ildQEge 39 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKR---VLILDQEGE 39 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCce---EEEEccccc
Confidence 468999999999999999999999987 999999876
No 357
>PRK07190 hypothetical protein; Provisional
Probab=97.84 E-value=0.00027 Score=70.05 Aligned_cols=100 Identities=16% Similarity=0.309 Sum_probs=74.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCC----------------------------------------cc-
Q 013890 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP----------------------------------------RL- 202 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~----------------------------------------~~- 202 (434)
..|+|||+|++|+-+|..|++.|.+|.++++.+.... ..
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i 85 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI 85 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence 4799999999999999999999999999987643110 00
Q ss_pred --------------------cC-HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 013890 203 --------------------FT-ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 203 --------------------~~-~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~ 261 (434)
++ ..+.+.+.+.+++.|++++.++++++++.++++ ..+.+.+|+++.++.||.|.|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~--v~v~~~~g~~v~a~~vVgADG~ 163 (487)
T PRK07190 86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAG--CLTTLSNGERIQSRYVIGADGS 163 (487)
T ss_pred eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe--eEEEECCCcEEEeCEEEECCCC
Confidence 00 112334555677889999999999999875444 3455677888999999999998
Q ss_pred ccCh
Q 013890 262 RPLI 265 (434)
Q Consensus 262 ~p~~ 265 (434)
+...
T Consensus 164 ~S~v 167 (487)
T PRK07190 164 RSFV 167 (487)
T ss_pred CHHH
Confidence 6544
No 358
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.83 E-value=0.00028 Score=68.21 Aligned_cols=97 Identities=19% Similarity=0.281 Sum_probs=71.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc----------------------------c--------------
Q 013890 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------L-------------- 202 (434)
Q Consensus 165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~----------------------------~-------------- 202 (434)
.++|||+|+.|+-+|..|++.|.+|.++++.+.+... .
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 3799999999999999999999999999976432100 0
Q ss_pred -c-CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890 203 -F-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 203 -~-~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p 263 (434)
+ ...+.+.+.+.+.+.|++++ ...+..+..+ ++....|.+.+|+++.++.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~-~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEAD-GVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEec-CCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 0 02334556666677799886 5578888763 2334567788888999999999999876
No 359
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.83 E-value=8.9e-05 Score=73.38 Aligned_cols=97 Identities=10% Similarity=0.224 Sum_probs=68.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHC
Q 013890 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
.+++|||||+.|+.+|..+++.|.+ |+|+++.+...-. + ...+ .....+.+++.
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~---Vtlv~~~~~il~~--------~----d~~~-----------~~~~~~~l~~~ 228 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSE---VDVVEMFDQVIPA--------A----DKDI-----------VKVFTKRIKKQ 228 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCC---EEEEecCCCCCCc--------C----CHHH-----------HHHHHHHHhhc
Confidence 6899999999999999999999876 9999988642100 0 0000 11234555566
Q ss_pred CcEEEcCCeEEEEeCCCCE--EEcCC--C--cEEEeceEEEccCCCcccc
Q 013890 86 GIELILSTEIVRADIASKT--LLSAT--G--LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~--v~~~~--~--~~~~~d~lilAtG~~~~~p 129 (434)
++++.++.+..+...++. +...+ + .++.+|.+|+|+|.+|...
T Consensus 229 -v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~ 277 (471)
T PRK06467 229 -FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGK 277 (471)
T ss_pred -eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCC
Confidence 999999999988754443 33322 2 4699999999999998754
No 360
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.83 E-value=0.00023 Score=68.62 Aligned_cols=101 Identities=21% Similarity=0.273 Sum_probs=72.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc--cC---C---c--ccCH----------------------------
Q 013890 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW--CM---P---R--LFTA---------------------------- 205 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~--~~---~---~--~~~~---------------------------- 205 (434)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+. +. . + .+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~ 83 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET 83 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence 4799999999999999999999999999996531 00 0 0 0000
Q ss_pred ---------------------------HHHHHHHHHHHH-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 013890 206 ---------------------------DIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVV 257 (434)
Q Consensus 206 ---------------------------~~~~~~~~~l~~-~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~ 257 (434)
.+...+.+.+++ .|++++.++++++++.++++ ..+++++|+++.+|+||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~~~lvIg 161 (384)
T PRK08849 84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG--NRVTLESGAEIEAKWVIG 161 (384)
T ss_pred EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe--EEEEECCCCEEEeeEEEE
Confidence 011112222323 47999999999999874444 468888999999999999
Q ss_pred ccCCccChh
Q 013890 258 GVGGRPLIS 266 (434)
Q Consensus 258 a~G~~p~~~ 266 (434)
|.|.+....
T Consensus 162 ADG~~S~vR 170 (384)
T PRK08849 162 ADGANSQVR 170 (384)
T ss_pred ecCCCchhH
Confidence 999887765
No 361
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.81 E-value=0.00047 Score=69.79 Aligned_cols=104 Identities=24% Similarity=0.311 Sum_probs=73.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc----------------------------------c------
Q 013890 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------L------ 202 (434)
Q Consensus 163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~----------------------------------~------ 202 (434)
..+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+... .
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 102 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE 102 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence 357999999999999999999999999999877532100 0
Q ss_pred -------------------cC-HHHHHHHHHHHHHc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCc-EEEcCEEEEccC
Q 013890 203 -------------------FT-ADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVNEVKLKDGR-TLEADIVVVGVG 260 (434)
Q Consensus 203 -------------------~~-~~~~~~~~~~l~~~-gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~-~i~~d~vv~a~G 260 (434)
++ ..+.+.+.+.+++. ++++++++++++++.++++....+...+|+ ++.+|.||.|.|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG 182 (547)
T PRK08132 103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDG 182 (547)
T ss_pred EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCC
Confidence 00 11223444555554 799999999999987545433334444554 689999999999
Q ss_pred CccChh
Q 013890 261 GRPLIS 266 (434)
Q Consensus 261 ~~p~~~ 266 (434)
.+....
T Consensus 183 ~~S~vR 188 (547)
T PRK08132 183 ARSPLR 188 (547)
T ss_pred CCcHHH
Confidence 877653
No 362
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.81 E-value=5.8e-05 Score=80.89 Aligned_cols=92 Identities=24% Similarity=0.236 Sum_probs=68.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCC-------c-ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEec
Q 013890 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------R-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 234 (434)
Q Consensus 163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~-------~-~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~ 234 (434)
+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. . .++.++.+...+.+++.||++++++.+..
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~---- 505 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGK---- 505 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccCC----
Confidence 57899999999999999999999999999998764421 1 13577888888889999999999965410
Q ss_pred CCCcEEEEEeCCC-cEEEcCEEEEccCCc-cC
Q 013890 235 ADGEVNEVKLKDG-RTLEADIVVVGVGGR-PL 264 (434)
Q Consensus 235 ~~g~~~~v~~~~g-~~i~~d~vv~a~G~~-p~ 264 (434)
.+...+- +...+|.||+|||.. |.
T Consensus 506 ------~~~~~~l~~~~~yDaViIATGa~~pr 531 (1006)
T PRK12775 506 ------TFTVPQLMNDKGFDAVFLGVGAGAPT 531 (1006)
T ss_pred ------ccCHHHHhhccCCCEEEEecCCCCCC
Confidence 1111111 124589999999984 44
No 363
>PRK08013 oxidoreductase; Provisional
Probab=97.80 E-value=0.00034 Score=67.84 Aligned_cols=101 Identities=19% Similarity=0.204 Sum_probs=74.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc----------ccC-----------------------------
Q 013890 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------LFT----------------------------- 204 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~----------~~~----------------------------- 204 (434)
..|+|||+|+.|+-+|..|++.|.+|+++++.+.+... .+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~~ 83 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGMEV 83 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEEE
Confidence 47999999999999999999999999999976531100 000
Q ss_pred ---------------------------HHHHHHHHHHHHHc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 013890 205 ---------------------------ADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVV 256 (434)
Q Consensus 205 ---------------------------~~~~~~~~~~l~~~-gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv 256 (434)
..+.+.+.+.+++. ||+++.++++.+++.++++ ..+.+.+|+++.+|+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v~v~~~~g~~i~a~lvV 161 (400)
T PRK08013 84 WDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE--AFLTLKDGSMLTARLVV 161 (400)
T ss_pred EeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--EEEEEcCCCEEEeeEEE
Confidence 01223334444453 7999999999999764443 45778889999999999
Q ss_pred EccCCccChh
Q 013890 257 VGVGGRPLIS 266 (434)
Q Consensus 257 ~a~G~~p~~~ 266 (434)
-|-|.+....
T Consensus 162 gADG~~S~vR 171 (400)
T PRK08013 162 GADGANSWLR 171 (400)
T ss_pred EeCCCCcHHH
Confidence 9999876654
No 364
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.79 E-value=6.2e-05 Score=74.47 Aligned_cols=91 Identities=18% Similarity=0.147 Sum_probs=68.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc--------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 013890 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~ 233 (434)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+.+... .++.++.....+.+.+.||++++++.+.. ..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-~~ 220 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK-DI 220 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC-cC
Confidence 3579999999999999999999999999999987654211 13556666667788999999999986531 10
Q ss_pred cCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890 234 NADGEVNEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 234 ~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p 263 (434)
.. +.....+|.|++|+|..+
T Consensus 221 ---------~~-~~~~~~~d~vvlAtGa~~ 240 (471)
T PRK12810 221 ---------TA-EELLAEYDAVFLGTGAYK 240 (471)
T ss_pred ---------CH-HHHHhhCCEEEEecCCCC
Confidence 00 111246899999999873
No 365
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.78 E-value=0.00036 Score=67.00 Aligned_cols=99 Identities=14% Similarity=0.278 Sum_probs=72.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC----ccCC--c--cc---------------------------------
Q 013890 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEP----WCMP--R--LF--------------------------------- 203 (434)
Q Consensus 165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~----~~~~--~--~~--------------------------------- 203 (434)
+|+|||+|+.|+-+|..|++.|.+|+++++.+ .+.. + .+
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 82 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDNK 82 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEECC
Confidence 68999999999999999999999999999652 1000 0 00
Q ss_pred --------------------CHHHHHHHHHHHHHcC-cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890 204 --------------------TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 204 --------------------~~~~~~~~~~~l~~~g-V~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~ 262 (434)
..++.+.+.+.+++.+ ++++.+++++++..++++ ..+.+.++ ++.+|+||-|-|.+
T Consensus 83 g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~v~~~~~-~~~adlvIgADG~~ 159 (374)
T PRK06617 83 ASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY--SIIKFDDK-QIKCNLLIICDGAN 159 (374)
T ss_pred CceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe--EEEEEcCC-EEeeCEEEEeCCCC
Confidence 0123444555555554 899999999999764443 35777776 89999999999987
Q ss_pred cChh
Q 013890 263 PLIS 266 (434)
Q Consensus 263 p~~~ 266 (434)
....
T Consensus 160 S~vR 163 (374)
T PRK06617 160 SKVR 163 (374)
T ss_pred chhH
Confidence 7664
No 366
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.78 E-value=5.8e-05 Score=67.27 Aligned_cols=58 Identities=16% Similarity=0.084 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHcCcEEEcCCeEEEEEecCCC---cEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890 207 IAAFYEGYYANKGIKIIKGTVAVGFTTNADG---EVNEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 207 ~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g---~~~~v~~~~g~~i~~d~vv~a~G~~p~ 264 (434)
+...+-+.++..|-++.++.+++.+..+.++ -...|.-..++++.+..+|-|+|...+
T Consensus 198 v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sd 258 (453)
T KOG2665|consen 198 VTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSD 258 (453)
T ss_pred HHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHh
Confidence 3444555578889999999999998764443 122344444678999999999997654
No 367
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.77 E-value=0.00045 Score=66.82 Aligned_cols=101 Identities=18% Similarity=0.279 Sum_probs=74.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC-------------------------C---cc------------
Q 013890 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------------------------P---RL------------ 202 (434)
Q Consensus 163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~-------------------------~---~~------------ 202 (434)
...|+|||+|+.|+-+|..|++.|.+|+++++.+... . ..
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE 84 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence 3479999999999999999999999999998764100 0 00
Q ss_pred ----------c---------------CHHHHHHHHHHHHHc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 013890 203 ----------F---------------TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVV 256 (434)
Q Consensus 203 ----------~---------------~~~~~~~~~~~l~~~-gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv 256 (434)
+ ...+.+.+.+.+++. |++++.++.+.++...+++ ..+.+++|+++.+|+||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI 162 (391)
T PRK08020 85 TWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG--WELTLADGEEIQAKLVI 162 (391)
T ss_pred EEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe--EEEEECCCCEEEeCEEE
Confidence 0 012233444455555 9999999999999763333 46777888899999999
Q ss_pred EccCCccCh
Q 013890 257 VGVGGRPLI 265 (434)
Q Consensus 257 ~a~G~~p~~ 265 (434)
.|.|.....
T Consensus 163 ~AdG~~S~v 171 (391)
T PRK08020 163 GADGANSQV 171 (391)
T ss_pred EeCCCCchh
Confidence 999987754
No 368
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.75 E-value=0.0005 Score=66.69 Aligned_cols=101 Identities=18% Similarity=0.242 Sum_probs=71.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc------------------------------------------
Q 013890 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------------ 201 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~------------------------------------------ 201 (434)
++|+|||+|+.|+-+|..|++.|.+|+++++.+.+...
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 68999999999999999999999999999876432100
Q ss_pred -cc-------------------C-HHHHHHHHHHHHH-cCcEEEcCCeEEEEEecCCCcEEEEEe---CCCcEEEcCEEE
Q 013890 202 -LF-------------------T-ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVNEVKL---KDGRTLEADIVV 256 (434)
Q Consensus 202 -~~-------------------~-~~~~~~~~~~l~~-~gV~~~~~~~v~~i~~~~~g~~~~v~~---~~g~~i~~d~vv 256 (434)
.+ . .++.+.+.+.+.+ .|++++++++++++..++++ ..+++ .+++++.+|+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~--v~v~~~~~~~~~~~~adlvI 160 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS--ITATIIRTNSVETVSAAYLI 160 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc--eEEEEEeCCCCcEEecCEEE
Confidence 00 0 1222334444444 47999999999999864333 33444 344679999999
Q ss_pred EccCCccChh
Q 013890 257 VGVGGRPLIS 266 (434)
Q Consensus 257 ~a~G~~p~~~ 266 (434)
-|-|.+....
T Consensus 161 gADG~~S~vR 170 (400)
T PRK06475 161 ACDGVWSMLR 170 (400)
T ss_pred ECCCccHhHH
Confidence 9999876554
No 369
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.74 E-value=0.00042 Score=67.37 Aligned_cols=102 Identities=21% Similarity=0.357 Sum_probs=73.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC-CccC----C--c--ccCH----------------------------
Q 013890 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE-PWCM----P--R--LFTA---------------------------- 205 (434)
Q Consensus 163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~-~~~~----~--~--~~~~---------------------------- 205 (434)
..+|+|||+|+.|+-+|..|++.|.+|+++++. +... + + .+.+
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 357999999999999999999999999999975 1100 0 0 0000
Q ss_pred ----------------------------HHHHHHHHHHHH-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 013890 206 ----------------------------DIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVV 256 (434)
Q Consensus 206 ----------------------------~~~~~~~~~l~~-~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv 256 (434)
.+.+.+.+.+.+ .||+++.+++++++..++++ ..+.+++|+++.+|+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~lvI 161 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE--AWLTLDNGQALTAKLVV 161 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe--EEEEECCCCEEEeCEEE
Confidence 122233333434 47999999999999763333 46788899999999999
Q ss_pred EccCCccChh
Q 013890 257 VGVGGRPLIS 266 (434)
Q Consensus 257 ~a~G~~p~~~ 266 (434)
.|.|......
T Consensus 162 gADG~~S~vR 171 (405)
T PRK08850 162 GADGANSWLR 171 (405)
T ss_pred EeCCCCChhH
Confidence 9999776543
No 370
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.74 E-value=8.5e-05 Score=76.29 Aligned_cols=92 Identities=22% Similarity=0.269 Sum_probs=70.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCC--------cccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 013890 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--------RLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~ 233 (434)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+.+.. .-++.++.+...+.+++.||++++++.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--- 385 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR--- 385 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC---
Confidence 368999999999999999999999999999998875421 114667777777888999999999986521
Q ss_pred cCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890 234 NADGEVNEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 234 ~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~ 264 (434)
+ +.+.+ ....+|.|++|+|..+.
T Consensus 386 --~-----~~~~~-l~~~~DaV~latGa~~~ 408 (639)
T PRK12809 386 --D-----ITFSD-LTSEYDAVFIGVGTYGM 408 (639)
T ss_pred --c-----CCHHH-HHhcCCEEEEeCCCCCC
Confidence 0 11111 12468999999997643
No 371
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.73 E-value=0.0004 Score=70.07 Aligned_cols=101 Identities=25% Similarity=0.338 Sum_probs=72.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc----------------------------------c------
Q 013890 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------L------ 202 (434)
Q Consensus 163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~----------------------------------~------ 202 (434)
..+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+... +
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~ 89 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR 89 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence 458999999999999999999999999999877432100 0
Q ss_pred ----cC-----------------HHHHHHHHHHHHH-cCcEEEcCCeEEEEEecCCCcEEEEEeC--CC--cEEEcCEEE
Q 013890 203 ----FT-----------------ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVNEVKLK--DG--RTLEADIVV 256 (434)
Q Consensus 203 ----~~-----------------~~~~~~~~~~l~~-~gV~~~~~~~v~~i~~~~~g~~~~v~~~--~g--~~i~~d~vv 256 (434)
++ +.+.+.+.+.+.+ .|+++++++++++++.++++. .+.++ +| +++.+|+||
T Consensus 90 ~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v--~v~~~~~~G~~~~i~ad~vV 167 (538)
T PRK06183 90 CLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGV--TVTLTDADGQRETVRARYVV 167 (538)
T ss_pred EEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeE--EEEEEcCCCCEEEEEEEEEE
Confidence 00 1222344445555 489999999999998755553 34444 56 479999999
Q ss_pred EccCCccCh
Q 013890 257 VGVGGRPLI 265 (434)
Q Consensus 257 ~a~G~~p~~ 265 (434)
-|.|.+...
T Consensus 168 gADG~~S~v 176 (538)
T PRK06183 168 GCDGANSFV 176 (538)
T ss_pred ecCCCchhH
Confidence 999976654
No 372
>PRK10015 oxidoreductase; Provisional
Probab=97.73 E-value=0.00054 Score=66.92 Aligned_cols=99 Identities=20% Similarity=0.303 Sum_probs=72.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC------------------Ccc-----------------------
Q 013890 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM------------------PRL----------------------- 202 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~------------------~~~----------------------- 202 (434)
-.++|||+|+.|+-+|..|++.|.+|.++++.+.+. +.+
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEESA 85 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCCc
Confidence 479999999999999999999999999998764320 000
Q ss_pred ----c----------------CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890 203 ----F----------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 203 ----~----------------~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~ 262 (434)
+ ...+.+.+.+.+++.|++++.+++|+.+.. +++.+..+.. ++.++.+|.||.|.|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~-~~~~v~~v~~-~~~~i~A~~VI~AdG~~ 163 (429)
T PRK10015 86 VTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVR-EGNKVTGVQA-GDDILEANVVILADGVN 163 (429)
T ss_pred eEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEE-eCCEEEEEEe-CCeEEECCEEEEccCcc
Confidence 0 011223466667788999999999999876 3455555554 44579999999999975
Q ss_pred cC
Q 013890 263 PL 264 (434)
Q Consensus 263 p~ 264 (434)
..
T Consensus 164 s~ 165 (429)
T PRK10015 164 SM 165 (429)
T ss_pred hh
Confidence 43
No 373
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.72 E-value=0.00054 Score=68.35 Aligned_cols=97 Identities=16% Similarity=0.231 Sum_probs=70.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC------------------Cc-------------------------
Q 013890 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM------------------PR------------------------- 201 (434)
Q Consensus 165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~------------------~~------------------------- 201 (434)
.++|||+|..|+++|..+++.|.+|.++++..... ..
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s 81 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS 81 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence 48999999999999999999999999998653110 00
Q ss_pred ----------ccCH-HHHHHHHHHHHHc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890 202 ----------LFTA-DIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 202 ----------~~~~-~~~~~~~~~l~~~-gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~ 262 (434)
.+|. .+...+.+.+++. |++++.+ .+.++..++++.+.+|.+.+|..+.||.||+|+|.-
T Consensus 82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtf 153 (617)
T TIGR00136 82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTF 153 (617)
T ss_pred CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCcc
Confidence 0000 1123445555555 7888765 566665434678889999999999999999999965
No 374
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.69 E-value=0.00012 Score=75.30 Aligned_cols=92 Identities=21% Similarity=0.208 Sum_probs=68.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC-------Cc-ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 013890 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~-------~~-~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~ 233 (434)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+.+. +. .++.++.+...+.+++.|+++++++.+. ..
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~d- 269 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-RD- 269 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-Cc-
Confidence 35799999999999999999999999999999876542 11 1356677777788889999999887541 11
Q ss_pred cCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890 234 NADGEVNEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 234 ~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~ 264 (434)
+.+++. ...+|.|++|+|..+.
T Consensus 270 --------v~~~~~-~~~~DaVilAtGa~~~ 291 (652)
T PRK12814 270 --------ITLEEL-QKEFDAVLLAVGAQKA 291 (652)
T ss_pred --------cCHHHH-HhhcCEEEEEcCCCCC
Confidence 112221 2358999999998754
No 375
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.68 E-value=4e-05 Score=72.50 Aligned_cols=85 Identities=27% Similarity=0.449 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHc-CcEEEcCCeEEEEEecCCCcEEEEEe---C--CCcEEEcCEEEEccCCccChhhhhccccc--cC
Q 013890 205 ADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVNEVKL---K--DGRTLEADIVVVGVGGRPLISLFKGQVAE--NK 276 (434)
Q Consensus 205 ~~~~~~~~~~l~~~-gV~~~~~~~v~~i~~~~~g~~~~v~~---~--~g~~i~~d~vv~a~G~~p~~~~~~~~~~~--~~ 276 (434)
..+.+.+.+.+.+. |++++++++|+.++..++|. ..|.+ . +..++.++.|++..|-....-+-+.+++. .-
T Consensus 181 G~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~-W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi~e~~gy 259 (488)
T PF06039_consen 181 GALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGR-WEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGIPEGKGY 259 (488)
T ss_pred HHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCC-EEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCChhhccc
Confidence 34566666667666 99999999999999876773 33443 2 23579999999999976544444556654 33
Q ss_pred CcEEeC-CCCCCCCC
Q 013890 277 GGIETD-DFFKTSAD 290 (434)
Q Consensus 277 g~i~vd-~~~~t~~~ 290 (434)
|+..|- .+++++.|
T Consensus 260 ggfPVsG~fl~~~n~ 274 (488)
T PF06039_consen 260 GGFPVSGQFLRCKNP 274 (488)
T ss_pred CCCcccceEEecCCH
Confidence 444444 55666544
No 376
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.66 E-value=0.00022 Score=69.13 Aligned_cols=92 Identities=13% Similarity=0.151 Sum_probs=61.9
Q ss_pred CCCcEEEECCCHHHHHHHHHH-HHCCCeEEEEeeCCccCCcc---c------CHHHHHHHHHHHHHcCcEEEcCCeEEEE
Q 013890 162 KNGKAVVVGGGYIGLELSAAL-KINNIDVSMVYPEPWCMPRL---F------TADIAAFYEGYYANKGIKIIKGTVAVGF 231 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~l-~~~g~~v~~~~~~~~~~~~~---~------~~~~~~~~~~~l~~~gV~~~~~~~v~~i 231 (434)
.+++|+|||+|+.|+.+|..| ++.|.+|+++++.+.+.... . -..+...+.+.+...+++++.+..+..
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~- 116 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV- 116 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC-
Confidence 478999999999999999965 56799999999988764321 0 124455555556677888875433211
Q ss_pred EecCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890 232 TTNADGEVNEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 232 ~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~ 264 (434)
.+..++= .-.+|.||+|+|..+.
T Consensus 117 ---------Dvt~eeL-~~~YDAVIlAtGA~~l 139 (506)
T PTZ00188 117 ---------DLKMEEL-RNHYNCVIFCCGASEV 139 (506)
T ss_pred ---------ccCHHHH-HhcCCEEEEEcCCCCC
Confidence 1111111 2268999999997754
No 377
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.66 E-value=0.00057 Score=73.69 Aligned_cols=101 Identities=24% Similarity=0.279 Sum_probs=70.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCccc----------CHHHHHHHHHHHHHc-CcEEEcCCeEEEE
Q 013890 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF----------TADIAAFYEGYYANK-GIKIIKGTVAVGF 231 (434)
Q Consensus 163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~-gV~~~~~~~v~~i 231 (434)
..+|+|||+|+.|+..|..+++.|.+|+++++.+.+..... ..++...+.+.+++. +|+++.+++|..+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i 242 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY 242 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence 46899999999999999999999999999998765432211 123434455566655 5999999998887
Q ss_pred EecCCCcEEEEEe-C-------CC------cEEEcCEEEEccCCccCh
Q 013890 232 TTNADGEVNEVKL-K-------DG------RTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 232 ~~~~~g~~~~v~~-~-------~g------~~i~~d~vv~a~G~~p~~ 265 (434)
.. ++.+..+.. . ++ .++.+|.||+|||.++..
T Consensus 243 ~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~ 288 (985)
T TIGR01372 243 YD--HNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERP 288 (985)
T ss_pred ec--CCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcC
Confidence 53 222221210 0 11 158999999999987754
No 378
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.65 E-value=4.9e-05 Score=74.20 Aligned_cols=95 Identities=21% Similarity=0.356 Sum_probs=27.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc--------------------------------------------
Q 013890 166 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-------------------------------------------- 201 (434)
Q Consensus 166 vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~-------------------------------------------- 201 (434)
|+|||+|+.|+-.|..+++.|.+|.++++.+.+...
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~~ 81 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYGW 81 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST--------------
T ss_pred EEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccccccc
Confidence 799999999999999999999999999988654210
Q ss_pred ----ccCHH-HHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCC---CcEEEcCEEEEccCC
Q 013890 202 ----LFTAD-IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKD---GRTLEADIVVVGVGG 261 (434)
Q Consensus 202 ----~~~~~-~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~---g~~i~~d~vv~a~G~ 261 (434)
.+++. ....+.+.+++.||++++++.+.++.. +++++.+|.+.+ ..++.++.+|-|||.
T Consensus 82 ~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~-~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 82 VSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIR-DGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp --------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 01111 222355566778999999999999987 466788888865 457999999999994
No 379
>PLN02985 squalene monooxygenase
Probab=97.64 E-value=6.3e-05 Score=74.93 Aligned_cols=36 Identities=25% Similarity=0.446 Sum_probs=32.8
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
..+||+|||||++|+++|..|++.|++ |+|+|+...
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~G~~---V~vlEr~~~ 77 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKDGRR---VHVIERDLR 77 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHcCCe---EEEEECcCC
Confidence 468999999999999999999999987 999999753
No 380
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.64 E-value=5.9e-05 Score=76.13 Aligned_cols=37 Identities=22% Similarity=0.422 Sum_probs=34.0
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 2 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
|...+||||||+|.|||+||.++++.|.+ |+||||.+
T Consensus 1 ~~~~~DVvVVG~G~AGl~AAl~Aa~~G~~---VivlEK~~ 37 (549)
T PRK12834 1 MAMDADVIVVGAGLAGLVAAAELADAGKR---VLLLDQEN 37 (549)
T ss_pred CCccCCEEEECcCHHHHHHHHHHHHCCCe---EEEEeCCC
Confidence 34679999999999999999999999987 99999987
No 381
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.64 E-value=0.0012 Score=63.89 Aligned_cols=138 Identities=22% Similarity=0.232 Sum_probs=91.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc----------------------------------------
Q 013890 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR---------------------------------------- 201 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~---------------------------------------- 201 (434)
..++++|||+|++|+-.|..|.+.|.++++++|.+.+...
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~ 84 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR 84 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence 3689999999999999999999999999999988554210
Q ss_pred cc-C-HHHHHHHHHHHHHcCc--EEEcCCeEEEEEecCCCcEEEEEeCCC----cEEEcCEEEEccCCc--cChhhhhcc
Q 013890 202 LF-T-ADIAAFYEGYYANKGI--KIIKGTVAVGFTTNADGEVNEVKLKDG----RTLEADIVVVGVGGR--PLISLFKGQ 271 (434)
Q Consensus 202 ~~-~-~~~~~~~~~~l~~~gV--~~~~~~~v~~i~~~~~g~~~~v~~~~g----~~i~~d~vv~a~G~~--p~~~~~~~~ 271 (434)
.+ + .++.+.|....+..++ .+.+++++..+....+| ...|.+.++ ++.-+|.|++|+|-. |+.......
T Consensus 85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~g-kW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~ 163 (448)
T KOG1399|consen 85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKG-KWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGP 163 (448)
T ss_pred cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCC-ceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCC
Confidence 00 1 1567778888888876 57778888888763323 356666544 367789999999965 555544332
Q ss_pred -ccccCCcEE-eCCCCCC---CCCceEEeccccc
Q 013890 272 -VAENKGGIE-TDDFFKT---SADDVYAVGDVAT 300 (434)
Q Consensus 272 -~~~~~g~i~-vd~~~~t---~~~~iya~Gd~~~ 300 (434)
+..-.|.+. .-++-.. ....|.++|--.+
T Consensus 164 ~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~S 197 (448)
T KOG1399|consen 164 GIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNS 197 (448)
T ss_pred chhhcCCcceehhhccCcccccCceEEEECCCcc
Confidence 223234333 3333222 4577888884443
No 382
>PRK06185 hypothetical protein; Provisional
Probab=97.64 E-value=0.00089 Score=65.13 Aligned_cols=102 Identities=24% Similarity=0.366 Sum_probs=72.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc----c------------------------------------
Q 013890 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----L------------------------------------ 202 (434)
Q Consensus 163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~----~------------------------------------ 202 (434)
...|+|||+|++|+-+|..|++.|.+|+++++.+..... .
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~ 85 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR 85 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence 457999999999999999999999999999976421000 0
Q ss_pred ------c--------------CHHHHHHHHHHHHH-cCcEEEcCCeEEEEEecCCCcEEEEE--eCCCc-EEEcCEEEEc
Q 013890 203 ------F--------------TADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVNEVK--LKDGR-TLEADIVVVG 258 (434)
Q Consensus 203 ------~--------------~~~~~~~~~~~l~~-~gV~~~~~~~v~~i~~~~~g~~~~v~--~~~g~-~i~~d~vv~a 258 (434)
+ ...+.+.+.+.+.+ .|++++.++++.++..+ ++.+..+. ..+|+ ++.+|+||.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g~~~i~a~~vI~A 164 (407)
T PRK06185 86 TVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDGPGEIRADLVVGA 164 (407)
T ss_pred EEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCCcEEEEeCEEEEC
Confidence 0 01233344444444 48999999999999763 44444343 34664 7999999999
Q ss_pred cCCccCh
Q 013890 259 VGGRPLI 265 (434)
Q Consensus 259 ~G~~p~~ 265 (434)
.|.....
T Consensus 165 dG~~S~v 171 (407)
T PRK06185 165 DGRHSRV 171 (407)
T ss_pred CCCchHH
Confidence 9976543
No 383
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.64 E-value=6.8e-05 Score=71.41 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=31.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.||+|||||++|+.+|+.|+++|++ |+|+|+.+.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~---V~LiE~rp~ 36 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVP---VELYEMRPV 36 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCc---EEEEEccCc
Confidence 6999999999999999999999988 999997654
No 384
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.64 E-value=7e-05 Score=71.03 Aligned_cols=35 Identities=26% Similarity=0.466 Sum_probs=31.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013890 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
+|++|||||++|+++|..|++.|.+ |+|+|+.+..
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~---V~viEk~~~i 36 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKR---VLVVEKRNHI 36 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCCC
Confidence 6999999999999999999998876 9999998653
No 385
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.62 E-value=0.00097 Score=64.42 Aligned_cols=100 Identities=30% Similarity=0.319 Sum_probs=72.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc--------------------------------------c--
Q 013890 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------------------------------------L-- 202 (434)
Q Consensus 163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~--------------------------------------~-- 202 (434)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+..... .
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~ 86 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRL 86 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCC
Confidence 347999999999999999999999999999876432000 0
Q ss_pred -------c---------------CHHHHHHHHHHHHHc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEcc
Q 013890 203 -------F---------------TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGV 259 (434)
Q Consensus 203 -------~---------------~~~~~~~~~~~l~~~-gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~ 259 (434)
+ ...+.+.+.+.+.+. ++. +.++++.+++.++++ ..+++++|+++.+|+||.|.
T Consensus 87 ~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~Ad 163 (388)
T PRK07494 87 IRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDE--VTVTLADGTTLSARLVVGAD 163 (388)
T ss_pred CCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCe--EEEEECCCCEEEEeEEEEec
Confidence 0 012234445555555 455 779999999764443 35778888899999999999
Q ss_pred CCccCh
Q 013890 260 GGRPLI 265 (434)
Q Consensus 260 G~~p~~ 265 (434)
|.....
T Consensus 164 G~~S~v 169 (388)
T PRK07494 164 GRNSPV 169 (388)
T ss_pred CCCchh
Confidence 987644
No 386
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.61 E-value=0.00024 Score=72.45 Aligned_cols=98 Identities=15% Similarity=0.078 Sum_probs=68.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhH-HHH
Q 013890 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEW-YKE 84 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 84 (434)
.+++|||||+.|+-.|..+++.|.+ |+++++.+...- .+. ..+ .....+. +++
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~e---VTLIe~~~~ll~--------~~d----~ei-----------s~~l~~~ll~~ 366 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSE---VVSFEYSPQLLP--------LLD----ADV-----------AKYFERVFLKS 366 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCe---EEEEeccCcccc--------cCC----HHH-----------HHHHHHHHhhc
Confidence 5799999999999999999998876 999999864210 000 000 0122333 356
Q ss_pred CCcEEEcCCeEEEEeCCCC--EEE--cCC-------C--------cEEEeceEEEccCCCcccc
Q 013890 85 KGIELILSTEIVRADIASK--TLL--SAT-------G--------LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~--~~~-------~--------~~~~~d~lilAtG~~~~~p 129 (434)
.|++++.++.+..+..... .+. ..+ + +++.+|.+++|+|-+|...
T Consensus 367 ~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~ 430 (659)
T PTZ00153 367 KPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTN 430 (659)
T ss_pred CCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCc
Confidence 7999999999999876442 232 211 1 2699999999999998754
No 387
>PLN02546 glutathione reductase
Probab=97.60 E-value=0.00035 Score=70.16 Aligned_cols=99 Identities=17% Similarity=0.163 Sum_probs=69.3
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+-.|..|++.+.+ |+|+++.+...-. + .... .....+.+++
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~---Vtlv~~~~~il~~--------~----d~~~-----------~~~l~~~L~~ 305 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSD---VHVFIRQKKVLRG--------F----DEEV-----------RDFVAEQMSL 305 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCe---EEEEEeccccccc--------c----CHHH-----------HHHHHHHHHH
Confidence 46899999999999999999998765 9999987531100 0 0000 1233466778
Q ss_pred CCcEEEcCCeEEEEeCC-CCE--EEcCCCcEEEeceEEEccCCCcccc
Q 013890 85 KGIELILSTEIVRADIA-SKT--LLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~-~~~--v~~~~~~~~~~d~lilAtG~~~~~p 129 (434)
.|++++.++.+..+... +.. +...++....+|.+++|+|.+|...
T Consensus 306 ~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 306 RGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred CCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCC
Confidence 99999999999888642 232 3333444445899999999998754
No 388
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.60 E-value=0.0005 Score=67.06 Aligned_cols=99 Identities=19% Similarity=0.248 Sum_probs=69.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCC-CeEEEEeeCCccCCcc----cCH-------------HH-------------------
Q 013890 165 KAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWCMPRL----FTA-------------DI------------------- 207 (434)
Q Consensus 165 ~vvVvG~g~~g~e~a~~l~~~g-~~v~~~~~~~~~~~~~----~~~-------------~~------------------- 207 (434)
+|+|||+|..|+-+|..|++.| .+|+++++.+.+.... +.+ .+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 7999999999999999999998 5999999875532100 000 00
Q ss_pred ----------------------HHHHHHHHHH--cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890 208 ----------------------AAFYEGYYAN--KGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 208 ----------------------~~~~~~~l~~--~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p 263 (434)
...+.+.|.+ ..+.++++++|++++.++++ ..+.+++|+++.+|.||.|.|.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEE--VQVLFTDGTEYRCDLLIGADGIKS 159 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCc--EEEEEcCCCEEEeeEEEECCCccH
Confidence 0011222221 14567889999999874444 468888998999999999999776
Q ss_pred Ch
Q 013890 264 LI 265 (434)
Q Consensus 264 ~~ 265 (434)
..
T Consensus 160 ~v 161 (414)
T TIGR03219 160 AL 161 (414)
T ss_pred HH
Confidence 54
No 389
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.60 E-value=0.00019 Score=74.00 Aligned_cols=91 Identities=22% Similarity=0.292 Sum_probs=67.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC-------Cc-ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 013890 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~-------~~-~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~ 233 (434)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+.+. +. -++.++.+...+.+++.||+++.++.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--- 402 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK--- 402 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC---
Confidence 46899999999999999999999999999999876532 11 13566666667788899999999986521
Q ss_pred cCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890 234 NADGEVNEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 234 ~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p 263 (434)
+ +...+- ...+|.|++|+|..+
T Consensus 403 --~-----i~~~~~-~~~~DavilAtGa~~ 424 (654)
T PRK12769 403 --D-----ISLESL-LEDYDAVFVGVGTYR 424 (654)
T ss_pred --c-----CCHHHH-HhcCCEEEEeCCCCC
Confidence 0 111111 236899999999754
No 390
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.60 E-value=0.0011 Score=64.27 Aligned_cols=100 Identities=20% Similarity=0.321 Sum_probs=71.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHC---CCeEEEEeeCC-c--cCCc--------------------ccC-------------
Q 013890 164 GKAVVVGGGYIGLELSAALKIN---NIDVSMVYPEP-W--CMPR--------------------LFT------------- 204 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~---g~~v~~~~~~~-~--~~~~--------------------~~~------------- 204 (434)
.+|+|||+|+.|+-+|..|++. |.+|+++++.. . ..+. ..+
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~ 83 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHIH 83 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEEE
Confidence 4799999999999999999998 99999999841 1 0000 000
Q ss_pred ----------------------------HHHHHHHHHHHHH-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEE
Q 013890 205 ----------------------------ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIV 255 (434)
Q Consensus 205 ----------------------------~~~~~~~~~~l~~-~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~v 255 (434)
.++.+.+.+.+.+ .|++++.+++++++...+++ ..+.+++|.++.+|.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~v 161 (395)
T PRK05732 84 VSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGS--VRVTLDDGETLTGRLL 161 (395)
T ss_pred EecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEE
Confidence 0122334444444 47999999999999763333 4577888888999999
Q ss_pred EEccCCccCh
Q 013890 256 VVGVGGRPLI 265 (434)
Q Consensus 256 v~a~G~~p~~ 265 (434)
|.|.|.....
T Consensus 162 I~AdG~~S~v 171 (395)
T PRK05732 162 VAADGSHSAL 171 (395)
T ss_pred EEecCCChhh
Confidence 9999987653
No 391
>PLN02576 protoporphyrinogen oxidase
Probab=97.59 E-value=8.9e-05 Score=74.15 Aligned_cols=38 Identities=26% Similarity=0.316 Sum_probs=34.1
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHc-CCCCCcEEEEeCCCCCC
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKEAVAP 44 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~-g~~~~~V~vie~~~~~~ 44 (434)
..+||+|||||++||+||+.|.+. |++ |+|+|+++..+
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~---v~vlEa~~rvG 49 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVN---VLVTEARDRVG 49 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCC---EEEEecCCCCC
Confidence 457999999999999999999998 887 99999998754
No 392
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.59 E-value=0.00024 Score=63.56 Aligned_cols=72 Identities=22% Similarity=0.279 Sum_probs=50.8
Q ss_pred CCeEEEEeeCCccCCcccCHHHHHHHHHHHHHc------CcEEEcCCeEEEEEecCCCcEEEEEeCC--C--cEEEcCEE
Q 013890 186 NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK------GIKIIKGTVAVGFTTNADGEVNEVKLKD--G--RTLEADIV 255 (434)
Q Consensus 186 g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------gV~~~~~~~v~~i~~~~~g~~~~v~~~~--g--~~i~~d~v 255 (434)
|..|---+|+.+.+|. ..++...+...+++. -+++.++++|+.|.. .+|.+.+|..-| | ..+.+|.|
T Consensus 122 GHSvpRTHr~s~plpp--gfei~~~L~~~l~k~as~~pe~~ki~~nskvv~il~-n~gkVsgVeymd~sgek~~~~~~~V 198 (477)
T KOG2404|consen 122 GHSVPRTHRSSGPLPP--GFEIVKALSTRLKKKASENPELVKILLNSKVVDILR-NNGKVSGVEYMDASGEKSKIIGDAV 198 (477)
T ss_pred CCCCCcccccCCCCCC--chHHHHHHHHHHHHhhhcChHHHhhhhcceeeeeec-CCCeEEEEEEEcCCCCccceecCce
Confidence 4555555677777775 345555555555432 378899999999985 688888877643 4 35788999
Q ss_pred EEccC
Q 013890 256 VVGVG 260 (434)
Q Consensus 256 v~a~G 260 (434)
|+|+|
T Consensus 199 VlatG 203 (477)
T KOG2404|consen 199 VLATG 203 (477)
T ss_pred EEecC
Confidence 99998
No 393
>PRK09897 hypothetical protein; Provisional
Probab=97.58 E-value=0.0013 Score=65.37 Aligned_cols=98 Identities=11% Similarity=0.085 Sum_probs=65.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CeEEEEeeCCccCCc----------------------------------------
Q 013890 164 GKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPR---------------------------------------- 201 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g--~~v~~~~~~~~~~~~---------------------------------------- 201 (434)
++|+|||+|+.|+-++..|.+.+ .+|+++++...+...
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 48999999999999999998764 478998875432210
Q ss_pred --------------c-----cCHHHHH---HHHHHHHHcC--cEEEcCCeEEEEEecCCCcEEEEEeCC-CcEEEcCEEE
Q 013890 202 --------------L-----FTADIAA---FYEGYYANKG--IKIIKGTVAVGFTTNADGEVNEVKLKD-GRTLEADIVV 256 (434)
Q Consensus 202 --------------~-----~~~~~~~---~~~~~l~~~g--V~~~~~~~v~~i~~~~~g~~~~v~~~~-g~~i~~d~vv 256 (434)
+ +...+.+ .+.+.+.+.| ++++.+++|++++..+++ ..+.+.+ +..+.+|.||
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g--~~V~t~~gg~~i~aD~VV 159 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAG--VMLATNQDLPSETFDLAV 159 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCE--EEEEECCCCeEEEcCEEE
Confidence 0 0000111 1222334555 788889999999874333 4566655 4679999999
Q ss_pred EccCCcc
Q 013890 257 VGVGGRP 263 (434)
Q Consensus 257 ~a~G~~p 263 (434)
+|+|..+
T Consensus 160 LAtGh~~ 166 (534)
T PRK09897 160 IATGHVW 166 (534)
T ss_pred ECCCCCC
Confidence 9999644
No 394
>PRK02106 choline dehydrogenase; Validated
Probab=97.58 E-value=8.1e-05 Score=75.41 Aligned_cols=39 Identities=18% Similarity=0.442 Sum_probs=35.7
Q ss_pred CCCCcCcEEEECCCHHHHHHHHHHHH-cCCCCCcEEEEeCCCC
Q 013890 1 MAEKSFKYVILGGGVSAGYAAREFAK-QGVKPGELAIISKEAV 42 (434)
Q Consensus 1 Mm~~~~dvvIIG~G~aGl~aA~~l~~-~g~~~~~V~vie~~~~ 42 (434)
||...||+||||||++|+.+|..|++ .|++ |+|||+.+.
T Consensus 1 ~~~~~~D~iIVG~G~aG~vvA~rLae~~g~~---VlvlEaG~~ 40 (560)
T PRK02106 1 MTTMEYDYIIIGAGSAGCVLANRLSEDPDVS---VLLLEAGGP 40 (560)
T ss_pred CCCCcCcEEEECCcHHHHHHHHHHHhCCCCe---EEEecCCCc
Confidence 78888999999999999999999999 6776 999999964
No 395
>PRK11445 putative oxidoreductase; Provisional
Probab=97.58 E-value=0.0014 Score=62.40 Aligned_cols=97 Identities=16% Similarity=0.285 Sum_probs=67.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC--------CcccCH-------------------------------
Q 013890 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--------PRLFTA------------------------------- 205 (434)
Q Consensus 165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~--------~~~~~~------------------------------- 205 (434)
.|+|||+|+.|+-+|..|++. .+|+++++.+... ...+.+
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~ 81 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL 81 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence 689999999999999999999 9999999775310 000000
Q ss_pred ------------------HHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe-CCCc--EEEcCEEEEccCCccC
Q 013890 206 ------------------DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL-KDGR--TLEADIVVVGVGGRPL 264 (434)
Q Consensus 206 ------------------~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~-~~g~--~i~~d~vv~a~G~~p~ 264 (434)
++.+.+.+ ..+.|++++.++.+++++..+++ ..+.+ ++|+ ++.+|.||.|.|....
T Consensus 82 ~~~~~~~~~~~~~~i~R~~~~~~L~~-~~~~gv~v~~~~~v~~i~~~~~~--~~v~~~~~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 82 ANSLTRNYQRSYINIDRHKFDLWLKS-LIPASVEVYHNSLCRKIWREDDG--YHVIFRADGWEQHITARYLVGADGANSM 158 (351)
T ss_pred cccchhhcCCCcccccHHHHHHHHHH-HHhcCCEEEcCCEEEEEEEcCCE--EEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence 01111222 23568999999999999864444 34554 5664 6899999999998755
Q ss_pred h
Q 013890 265 I 265 (434)
Q Consensus 265 ~ 265 (434)
.
T Consensus 159 v 159 (351)
T PRK11445 159 V 159 (351)
T ss_pred H
Confidence 4
No 396
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.57 E-value=0.00039 Score=69.15 Aligned_cols=134 Identities=16% Similarity=0.124 Sum_probs=80.3
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|.+|+++|..|+++|.+ |+++|+.+... .....+.+++
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~---V~~~d~~~~~~------------------------------~~~~~~~l~~ 62 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGAR---VTVVDDGDDER------------------------------HRALAAILEA 62 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCchhh------------------------------hHHHHHHHHH
Confidence 45899999999999999999999986 99999764200 0122455777
Q ss_pred CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhc-CC
Q 013890 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAK-KN 163 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~-~~ 163 (434)
.|++++.+..+. ....+|.+|+++|..|..|.. ......++-.....+- +...+... +.
T Consensus 63 ~gv~~~~~~~~~--------------~~~~~D~Vv~s~Gi~~~~~~~---~~a~~~gi~v~~~~e~---~~~~~~~~~~~ 122 (480)
T PRK01438 63 LGATVRLGPGPT--------------LPEDTDLVVTSPGWRPDAPLL---AAAADAGIPVWGEVEL---AWRLRDPDRPA 122 (480)
T ss_pred cCCEEEECCCcc--------------ccCCCCEEEECCCcCCCCHHH---HHHHHCCCeecchHHH---HHHhhhccCCC
Confidence 899998774332 114589999999998876642 2222223222222222 11122111 12
Q ss_pred CcEEEECCC---HHHHHHHHHHHHCCCeEEE
Q 013890 164 GKAVVVGGG---YIGLELSAALKINNIDVSM 191 (434)
Q Consensus 164 ~~vvVvG~g---~~g~e~a~~l~~~g~~v~~ 191 (434)
+.|.|-|+- -+.--++..|...|.++..
T Consensus 123 ~~I~VTGTnGKTTTt~mi~~iL~~~g~~~~~ 153 (480)
T PRK01438 123 PWLAVTGTNGKTTTVQMLASMLRAAGLRAAA 153 (480)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHHHcCCCeEE
Confidence 345666642 2333456666677766554
No 397
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00068 Score=57.56 Aligned_cols=97 Identities=14% Similarity=0.147 Sum_probs=72.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEee--------------------CCccCCcccCHHHHHHHHHHHHHcCcEE
Q 013890 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYP--------------------EPWCMPRLFTADIAAFYEGYYANKGIKI 222 (434)
Q Consensus 163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~--------------------~~~~~~~~~~~~~~~~~~~~l~~~gV~~ 222 (434)
..+++|||+|+.+.-.|..+++...+..+++. -|.|......+++.+.++++.++.|-++
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i 87 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI 87 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence 35899999999999999998887655555432 2333333456899999999999999999
Q ss_pred EcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890 223 IKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 223 ~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p 263 (434)
+.. +|.+++. .+....+.+ |.+.+.+|.||+|||...
T Consensus 88 ~tE-tVskv~~--sskpF~l~t-d~~~v~~~avI~atGAsA 124 (322)
T KOG0404|consen 88 ITE-TVSKVDL--SSKPFKLWT-DARPVTADAVILATGASA 124 (322)
T ss_pred eee-ehhhccc--cCCCeEEEe-cCCceeeeeEEEecccce
Confidence 876 5677766 444445544 555799999999999654
No 398
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.56 E-value=0.00048 Score=65.80 Aligned_cols=94 Identities=22% Similarity=0.306 Sum_probs=63.9
Q ss_pred cEEEECCCHHHHHHHHHHHHC--CCeEEEEeeCCccCCc----c----cCHHHHH-------------------------
Q 013890 165 KAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPR----L----FTADIAA------------------------- 209 (434)
Q Consensus 165 ~vvVvG~g~~g~e~a~~l~~~--g~~v~~~~~~~~~~~~----~----~~~~~~~------------------------- 209 (434)
.++|||+|..|+.+|..|.+. |.+|.++++.+...+. + .++....
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 378999999999999999987 9999999987633221 1 1111100
Q ss_pred ---------HHHHH-HHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890 210 ---------FYEGY-YANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 210 ---------~~~~~-l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~ 264 (434)
.+.+. +++.+..++++++|.++.. ++ |++++|+++.+|.||.|.|.++.
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~--~~----v~l~dg~~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDA--DG----VDLAPGTRINARSVIDCRGFKPS 139 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeC--CE----EEECCCCEEEeeEEEECCCCCCC
Confidence 11111 2222444677888888843 33 55578999999999999998764
No 399
>PTZ00367 squalene epoxidase; Provisional
Probab=97.56 E-value=8.3e-05 Score=74.60 Aligned_cols=35 Identities=23% Similarity=0.557 Sum_probs=32.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
..+||+|||||++|+++|..|++.|++ |+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~---V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRK---VLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCE---EEEEcccc
Confidence 358999999999999999999999987 99999975
No 400
>PLN02268 probable polyamine oxidase
Probab=97.55 E-value=9.9e-05 Score=72.48 Aligned_cols=36 Identities=19% Similarity=0.378 Sum_probs=32.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~ 44 (434)
.+|+|||||.|||+||+.|.+.|++ |+|+|+.+..+
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~---v~vlEa~~r~G 36 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFK---VTLLESRDRIG 36 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCe---EEEEeCCCCCC
Confidence 3799999999999999999998886 99999998754
No 401
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.54 E-value=0.0015 Score=64.22 Aligned_cols=62 Identities=18% Similarity=0.124 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC--CCc--EEEcCEEEEccC-CccChhhh
Q 013890 207 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK--DGR--TLEADIVVVGVG-GRPLISLF 268 (434)
Q Consensus 207 ~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~--~g~--~i~~d~vv~a~G-~~p~~~~~ 268 (434)
+.+.+.+.+++.|++++++++++++..++++++.++... +++ .+.++.||+|+| +..|.++.
T Consensus 132 l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m~ 198 (439)
T TIGR01813 132 IVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEMI 198 (439)
T ss_pred HHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHHH
Confidence 334555566778999999999999987556777766553 343 478999999999 56655544
No 402
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.52 E-value=0.00024 Score=73.34 Aligned_cols=92 Identities=17% Similarity=0.202 Sum_probs=72.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc--------cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 013890 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL--------FTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~ 233 (434)
.++++.|||+|+.|+-+|..|.+.|..|++.+|+++....+ +|+.+.++-.+.+.+.||+|..|+++-+-
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~-- 1861 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH-- 1861 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc--
Confidence 57899999999999999999999999999999998864321 57778888888999999999999765321
Q ss_pred cCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890 234 NADGEVNEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 234 ~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~ 264 (434)
+. -|+-.-+.|.||+|+|..-.
T Consensus 1862 --------vs-~d~l~~~~daiv~a~gst~p 1883 (2142)
T KOG0399|consen 1862 --------VS-LDELKKENDAIVLATGSTTP 1883 (2142)
T ss_pred --------cc-HHHHhhccCeEEEEeCCCCC
Confidence 11 12222357889999996543
No 403
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.52 E-value=0.0014 Score=64.27 Aligned_cols=102 Identities=23% Similarity=0.338 Sum_probs=74.4
Q ss_pred cEEEECCCHHHHHHHHHHHH----CCCeEEEEeeCC--ccC------------Cc--c----------------------
Q 013890 165 KAVVVGGGYIGLELSAALKI----NNIDVSMVYPEP--WCM------------PR--L---------------------- 202 (434)
Q Consensus 165 ~vvVvG~g~~g~e~a~~l~~----~g~~v~~~~~~~--~~~------------~~--~---------------------- 202 (434)
.|+|||+|+.|+-+|..|++ .|.+|+++++.+ ... .+ .
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~~ 81 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSDR 81 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhhc
Confidence 58999999999999999998 799999999832 210 00 0
Q ss_pred -------------------cC--------------HHHHHHHHHHHHHcC---cEEEcCCeEEEEEec-----CCCcEEE
Q 013890 203 -------------------FT--------------ADIAAFYEGYYANKG---IKIIKGTVAVGFTTN-----ADGEVNE 241 (434)
Q Consensus 203 -------------------~~--------------~~~~~~~~~~l~~~g---V~~~~~~~v~~i~~~-----~~g~~~~ 241 (434)
++ ..+.+.+.+.+++.+ ++++.++++.+++.. +++....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~ 161 (437)
T TIGR01989 82 IQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVH 161 (437)
T ss_pred CCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceE
Confidence 00 123344555566654 999999999999641 2233357
Q ss_pred EEeCCCcEEEcCEEEEccCCccChh
Q 013890 242 VKLKDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 242 v~~~~g~~i~~d~vv~a~G~~p~~~ 266 (434)
+.+.+|+++.+|+||-|-|......
T Consensus 162 v~~~~g~~i~a~llVgADG~~S~vR 186 (437)
T TIGR01989 162 ITLSDGQVLYTKLLIGADGSNSNVR 186 (437)
T ss_pred EEEcCCCEEEeeEEEEecCCCChhH
Confidence 8889999999999999999877665
No 404
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.52 E-value=0.00019 Score=67.65 Aligned_cols=35 Identities=23% Similarity=0.475 Sum_probs=30.1
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
..|||||||||.||.-||...+|.|.+ .+++..+-
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~---TlLlT~~l 61 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGAR---TLLLTHNL 61 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCc---eEEeeccc
Confidence 468999999999999999999999977 57776663
No 405
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.51 E-value=0.00011 Score=74.34 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=32.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
+..+|+|||||++|+++|..|++.|++ |+|+|+.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~---V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFD---VLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCe---EEEEeccc
Confidence 458999999999999999999999987 99999975
No 406
>PRK06996 hypothetical protein; Provisional
Probab=97.51 E-value=0.0013 Score=63.76 Aligned_cols=98 Identities=22% Similarity=0.290 Sum_probs=73.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC----CeEEEEeeCCccCCc-------------------------------------
Q 013890 163 NGKAVVVGGGYIGLELSAALKINN----IDVSMVYPEPWCMPR------------------------------------- 201 (434)
Q Consensus 163 ~~~vvVvG~g~~g~e~a~~l~~~g----~~v~~~~~~~~~~~~------------------------------------- 201 (434)
...|+|||+|+.|+-+|..|++.| .+|+++++.+..-..
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~ 90 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQR 90 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEecC
Confidence 458999999999999999999987 469999875311000
Q ss_pred -c-------------------c-CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCC---cEEEcCEEEE
Q 013890 202 -L-------------------F-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG---RTLEADIVVV 257 (434)
Q Consensus 202 -~-------------------~-~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g---~~i~~d~vv~ 257 (434)
. . ...+.+.+.+.+++.|++++.++++.+++.++++ ..+.+.++ +++.+|+||-
T Consensus 91 ~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~--v~v~~~~~~g~~~i~a~lvIg 168 (398)
T PRK06996 91 GHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADG--VTLALGTPQGARTLRARIAVQ 168 (398)
T ss_pred CCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe--EEEEECCCCcceEEeeeEEEE
Confidence 0 0 1245667777888889999999999999764444 45666654 5899999999
Q ss_pred ccCCc
Q 013890 258 GVGGR 262 (434)
Q Consensus 258 a~G~~ 262 (434)
|-|..
T Consensus 169 ADG~~ 173 (398)
T PRK06996 169 AEGGL 173 (398)
T ss_pred CCCCC
Confidence 99953
No 407
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.48 E-value=0.0019 Score=62.47 Aligned_cols=101 Identities=20% Similarity=0.241 Sum_probs=72.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC--Cc----c-----------------------------------
Q 013890 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--PR----L----------------------------------- 202 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~--~~----~----------------------------------- 202 (434)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+... .. .
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~ 82 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR 82 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence 479999999999999999999999999999775310 00 0
Q ss_pred -----c-------------CHHHHHHHHHHHHHcCcEEEcCCeEEEEEe-cCCCcEEEEEe-CCCc--EEEcCEEEEccC
Q 013890 203 -----F-------------TADIAAFYEGYYANKGIKIIKGTVAVGFTT-NADGEVNEVKL-KDGR--TLEADIVVVGVG 260 (434)
Q Consensus 203 -----~-------------~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~-~~~g~~~~v~~-~~g~--~i~~d~vv~a~G 260 (434)
+ ...+.+.+.+...+.|+++++++++++++. ++++ ..|.+ .+|+ ++.+|+||-|-|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~--~~V~~~~~G~~~~i~ad~vVgADG 160 (392)
T PRK08243 83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDR--PYVTYEKDGEEHRLDCDFIAGCDG 160 (392)
T ss_pred EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCc--eEEEEEcCCeEEEEEeCEEEECCC
Confidence 0 012233444455678999999999998875 2233 34555 4664 689999999999
Q ss_pred CccChh
Q 013890 261 GRPLIS 266 (434)
Q Consensus 261 ~~p~~~ 266 (434)
.+..+.
T Consensus 161 ~~S~vR 166 (392)
T PRK08243 161 FHGVSR 166 (392)
T ss_pred CCCchh
Confidence 877654
No 408
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.46 E-value=0.00015 Score=72.55 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=32.3
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
..+||||||+| +|++||.++++.|.+ |+||||...
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~---V~vlEk~~~ 40 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLS---VALVEATDK 40 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCc---EEEEecCCC
Confidence 36899999999 999999999999987 999999875
No 409
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.43 E-value=0.0021 Score=61.66 Aligned_cols=96 Identities=28% Similarity=0.349 Sum_probs=70.4
Q ss_pred EEEECCCHHHHHHHHHH--HHCCCeEEEEeeCCcc--CCc----cc----------------------------------
Q 013890 166 AVVVGGGYIGLELSAAL--KINNIDVSMVYPEPWC--MPR----LF---------------------------------- 203 (434)
Q Consensus 166 vvVvG~g~~g~e~a~~l--~~~g~~v~~~~~~~~~--~~~----~~---------------------------------- 203 (434)
++|||+|+.|+-+|..| .+.|.+|.++++.+.. ... +.
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~Y 81 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYPY 81 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccce
Confidence 78999999999999999 7789999999876543 110 00
Q ss_pred ----CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890 204 ----TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 204 ----~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~ 264 (434)
...+.+.+.+.+.+.| ....++.|.+|+..++ ...+.+++|+++.++.||-|.|..+.
T Consensus 82 ~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~--~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 82 CMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETGD--GVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred EEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecCc--eEEEEECCCCEEEeeEEEECCCcccc
Confidence 0134445555666445 4567889999987443 35678899999999999999996554
No 410
>PRK13984 putative oxidoreductase; Provisional
Probab=97.43 E-value=0.00039 Score=71.18 Aligned_cols=91 Identities=20% Similarity=0.128 Sum_probs=67.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc--------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 013890 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~ 233 (434)
++++++|||+|+.|+.+|..|.+.|.+|+++++.+..... .++.++.....+.+++.|++++.++.+..-
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~-- 359 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGKD-- 359 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCCc--
Confidence 5788999999999999999999999999999887654211 134556666667888999999999876320
Q ss_pred cCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890 234 NADGEVNEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 234 ~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p 263 (434)
+..++ ....+|.||+|+|..+
T Consensus 360 --------~~~~~-~~~~yD~vilAtGa~~ 380 (604)
T PRK13984 360 --------IPLEE-LREKHDAVFLSTGFTL 380 (604)
T ss_pred --------CCHHH-HHhcCCEEEEEcCcCC
Confidence 11111 1357999999999763
No 411
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.43 E-value=0.00011 Score=68.00 Aligned_cols=62 Identities=13% Similarity=0.233 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHcCcEEEcCCeEEEEEec-CCCcEEEEEeCC--Cc----EEEcCEEEEccCCccChhhh
Q 013890 207 IAAFYEGYYANKGIKIIKGTVAVGFTTN-ADGEVNEVKLKD--GR----TLEADIVVVGVGGRPLISLF 268 (434)
Q Consensus 207 ~~~~~~~~l~~~gV~~~~~~~v~~i~~~-~~g~~~~v~~~~--g~----~i~~d~vv~a~G~~p~~~~~ 268 (434)
....+...+++.|++++.++.|.+|..+ +++++++|.+.+ +. .+.++.||+|.|.--...++
T Consensus 195 ~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LL 263 (296)
T PF00732_consen 195 ATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLL 263 (296)
T ss_dssp HHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHH
T ss_pred hhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhh
Confidence 3455666666669999999999999542 466777776643 33 46789999999965555544
No 412
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.43 E-value=0.0016 Score=62.69 Aligned_cols=58 Identities=21% Similarity=0.359 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCC---cEEEEEe-CCCc--EE---EcCEEEEccCCc
Q 013890 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG---EVNEVKL-KDGR--TL---EADIVVVGVGGR 262 (434)
Q Consensus 205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g---~~~~v~~-~~g~--~i---~~d~vv~a~G~~ 262 (434)
+.+...+.+.|+++||+|+++++|+.+..+.++ .+..+.+ .+|+ .+ +-|+|++..|..
T Consensus 207 eSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~ 273 (500)
T PF06100_consen 207 ESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSM 273 (500)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCcc
Confidence 567888999999999999999999999763222 2333433 3443 23 358899888854
No 413
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.41 E-value=0.0025 Score=61.51 Aligned_cols=98 Identities=19% Similarity=0.366 Sum_probs=67.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeeC-Ccc--C------------------------------Cc----------
Q 013890 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPE-PWC--M------------------------------PR---------- 201 (434)
Q Consensus 165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~-~~~--~------------------------------~~---------- 201 (434)
.|+|||+|+.|+-+|..|++.|.+|.++++. +.. + +.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS 81 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence 5899999999999999999999999999876 210 0 00
Q ss_pred ---c---cC-HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCC------C--cEEEcCEEEEccCCccCh
Q 013890 202 ---L---FT-ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKD------G--RTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 202 ---~---~~-~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~------g--~~i~~d~vv~a~G~~p~~ 265 (434)
+ ++ ..+.+.+.+.+.+.|++++.+ .++++..++++ ..+.+.+ | .++.+|.||.|.|.+...
T Consensus 82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~--~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v 157 (388)
T TIGR02023 82 EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDG--VTLTYRTPKKGAGGEKGSVEADVVIGADGANSPV 157 (388)
T ss_pred CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCe--EEEEEEeccccCCCcceEEEeCEEEECCCCCcHH
Confidence 0 01 123345556667789999765 58888763333 3455442 2 378999999999976544
No 414
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.41 E-value=0.0035 Score=59.29 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=39.8
Q ss_pred CHhHHHHCCcEEEcCCeEEEEeCCCC---EEEcCCCcEEEeceEEEccCC
Q 013890 78 LPEWYKEKGIELILSTEIVRADIASK---TLLSATGLIFKYQILVIATGS 124 (434)
Q Consensus 78 ~~~~~~~~~v~~~~~~~v~~i~~~~~---~v~~~~~~~~~~d~lilAtG~ 124 (434)
..+.+++.|++++++++|.++..++. .+.+.+|.++.+|+||+|.|-
T Consensus 179 i~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Gr 228 (486)
T COG2509 179 IREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGR 228 (486)
T ss_pred HHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCc
Confidence 34556678999999999999998775 577788999999999999994
No 415
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.41 E-value=0.00018 Score=71.18 Aligned_cols=51 Identities=22% Similarity=0.337 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccC
Q 013890 206 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVG 260 (434)
Q Consensus 206 ~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G 260 (434)
.+.+.+.+.+.+ ++++++++|++|+..+++ ..|.+.+|+++.+|.||+|+.
T Consensus 227 ~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~--~~v~~~~g~~~~ad~VI~a~p 277 (463)
T PRK12416 227 TIIDRLEEVLTE--TVVKKGAVTTAVSKQGDR--YEISFANHESIQADYVVLAAP 277 (463)
T ss_pred HHHHHHHHhccc--ccEEcCCEEEEEEEcCCE--EEEEECCCCEEEeCEEEECCC
Confidence 344555555533 579999999999874443 467778888899999999986
No 416
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.41 E-value=0.00023 Score=67.36 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=34.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~ 44 (434)
...+|||||||.|||+||..|.++|..+ ++|+|..+..+
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~--~~IlEa~dRIG 58 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFID--VLILEASDRIG 58 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCce--EEEEEeccccC
Confidence 4578999999999999999999888765 99999998754
No 417
>PRK07538 hypothetical protein; Provisional
Probab=97.41 E-value=0.0023 Score=62.40 Aligned_cols=102 Identities=23% Similarity=0.308 Sum_probs=68.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc----------------------------------c-------
Q 013890 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL----------------------------------F------- 203 (434)
Q Consensus 165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~----------------------------------~------- 203 (434)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.+.. +
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI 81 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence 68999999999999999999999999998875321100 0
Q ss_pred -------------------CHHHHHHHHHHHHH-cC-cEEEcCCeEEEEEecCCCcEEEEEeC-C--CcEEEcCEEEEcc
Q 013890 204 -------------------TADIAAFYEGYYAN-KG-IKIIKGTVAVGFTTNADGEVNEVKLK-D--GRTLEADIVVVGV 259 (434)
Q Consensus 204 -------------------~~~~~~~~~~~l~~-~g-V~~~~~~~v~~i~~~~~g~~~~v~~~-~--g~~i~~d~vv~a~ 259 (434)
...+.+.+.+.+.+ .| +++++++++++++.++++.+..+... + ++++.+|+||-|-
T Consensus 82 ~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgAD 161 (413)
T PRK07538 82 WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGAD 161 (413)
T ss_pred eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECC
Confidence 00122233334333 35 57999999999987555533332221 1 2489999999999
Q ss_pred CCccChh
Q 013890 260 GGRPLIS 266 (434)
Q Consensus 260 G~~p~~~ 266 (434)
|.+....
T Consensus 162 G~~S~vR 168 (413)
T PRK07538 162 GIHSAVR 168 (413)
T ss_pred CCCHHHh
Confidence 9766543
No 418
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.0002 Score=68.80 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=32.7
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~ 44 (434)
+|+|+|||.|||+||.+|+++|++ |+|+|..+..+
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~---vt~~ea~~~~G 36 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYD---VTLYEARDRLG 36 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCc---eEEEeccCccC
Confidence 799999999999999999999997 99999998754
No 419
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.39 E-value=0.00021 Score=72.47 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=33.3
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
..+||||||+|.||++||+.+++.|.+ |+|+||...
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~---VivlEk~~~ 45 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLD---TLVVEKSAH 45 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCc---EEEEEcCCC
Confidence 468999999999999999999999987 999999975
No 420
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.38 E-value=0.0032 Score=52.13 Aligned_cols=42 Identities=31% Similarity=0.489 Sum_probs=32.8
Q ss_pred cCcEEE-cCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 013890 218 KGIKII-KGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 218 ~gV~~~-~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~ 261 (434)
.||++. ...+|..+...+++ ..+.+++|..+.+|.||+|+|.
T Consensus 113 ~~i~v~~~~~~V~~i~~~~~~--~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 113 AGITVRHVRAEVVDIRRDDDG--YRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCcEEEEEeeEEEEEEEcCCc--EEEEECCCCEEEeCEEEECCCC
Confidence 355554 35588899885555 5788899999999999999995
No 421
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.36 E-value=0.00064 Score=68.98 Aligned_cols=91 Identities=20% Similarity=0.211 Sum_probs=66.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCC--------cccCHHHHHHHHHHHHHcCcEEEcCCeE-EEEE
Q 013890 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--------RLFTADIAAFYEGYYANKGIKIIKGTVA-VGFT 232 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~gV~~~~~~~v-~~i~ 232 (434)
.+++|+|||+|++|+.+|..|++.|.+|+++++.+.+.. ..++.++.+.-.+.+++.|++++.++.+ ..+.
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~ 215 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDIT 215 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCC
Confidence 578999999999999999999999999999987665421 1134555665566778899999988765 3222
Q ss_pred ecCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890 233 TNADGEVNEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 233 ~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~ 264 (434)
. +. + ...+|.|++|+|..+.
T Consensus 216 ~--~~------~----~~~~D~Vi~AtG~~~~ 235 (564)
T PRK12771 216 L--EQ------L----EGEFDAVFVAIGAQLG 235 (564)
T ss_pred H--HH------H----HhhCCEEEEeeCCCCC
Confidence 1 00 1 1247999999997654
No 422
>PRK06126 hypothetical protein; Provisional
Probab=97.34 E-value=0.0034 Score=63.53 Aligned_cols=103 Identities=24% Similarity=0.324 Sum_probs=70.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc-----------------------------------------
Q 013890 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------------- 201 (434)
Q Consensus 163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~----------------------------------------- 201 (434)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+.....
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~ 86 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR 86 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence 468999999999999999999999999999876421100
Q ss_pred -------------c----------------------cC-HHHHHHHHHHHHH-cCcEEEcCCeEEEEEecCCCcEEEEEe
Q 013890 202 -------------L----------------------FT-ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVNEVKL 244 (434)
Q Consensus 202 -------------~----------------------~~-~~~~~~~~~~l~~-~gV~~~~~~~v~~i~~~~~g~~~~v~~ 244 (434)
. .+ ..+.+.+.+.+++ .|+++++++.+++++.++++....+..
T Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~ 166 (545)
T PRK06126 87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVED 166 (545)
T ss_pred CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEE
Confidence 0 00 0122334444444 489999999999998744442222221
Q ss_pred -CCCc--EEEcCEEEEccCCccCh
Q 013890 245 -KDGR--TLEADIVVVGVGGRPLI 265 (434)
Q Consensus 245 -~~g~--~i~~d~vv~a~G~~p~~ 265 (434)
.+|+ ++.+|+||.|.|.+...
T Consensus 167 ~~~g~~~~i~ad~vVgADG~~S~V 190 (545)
T PRK06126 167 LDGGESLTIRADYLVGCDGARSAV 190 (545)
T ss_pred CCCCcEEEEEEEEEEecCCcchHH
Confidence 3453 68999999999976543
No 423
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.33 E-value=0.00067 Score=65.11 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=31.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCcc
Q 013890 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 198 (434)
Q Consensus 165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~ 198 (434)
+|+|||+|..|+|+|..|++.|.+|+++++.+..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 6899999999999999999999999999976654
No 424
>PLN02676 polyamine oxidase
Probab=97.32 E-value=0.00032 Score=69.50 Aligned_cols=39 Identities=23% Similarity=0.393 Sum_probs=33.9
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~ 44 (434)
..+||+|||||++||+||++|++.|.+ +|+|+|+.+..+
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~--~v~vlE~~~~~G 63 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIE--DILILEATDRIG 63 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCC--cEEEecCCCCCC
Confidence 468999999999999999999999862 299999998653
No 425
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.30 E-value=0.0033 Score=60.72 Aligned_cols=102 Identities=17% Similarity=0.201 Sum_probs=71.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC--C----ccc----------------------------------
Q 013890 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--P----RLF---------------------------------- 203 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~--~----~~~---------------------------------- 203 (434)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+... . ..+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDGQ 82 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCCE
Confidence 579999999999999999999999999999876310 0 000
Q ss_pred ------------------C-HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC-CCc--EEEcCEEEEccCC
Q 013890 204 ------------------T-ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK-DGR--TLEADIVVVGVGG 261 (434)
Q Consensus 204 ------------------~-~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~-~g~--~i~~d~vv~a~G~ 261 (434)
. ..+...+.+.+.+.|+.++++..++.+...++.. ..|.+. +|+ ++.+|+||-|-|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~-~~V~~~~~g~~~~i~adlvIGADG~ 161 (390)
T TIGR02360 83 RFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDR-PYVTFERDGERHRLDCDFIAGCDGF 161 (390)
T ss_pred EEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCc-cEEEEEECCeEEEEEeCEEEECCCC
Confidence 0 1222344555566788888888777765412222 356664 675 6899999999997
Q ss_pred ccChh
Q 013890 262 RPLIS 266 (434)
Q Consensus 262 ~p~~~ 266 (434)
+....
T Consensus 162 ~S~VR 166 (390)
T TIGR02360 162 HGVSR 166 (390)
T ss_pred chhhH
Confidence 76554
No 426
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.29 E-value=0.0051 Score=59.52 Aligned_cols=100 Identities=22% Similarity=0.326 Sum_probs=66.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCC---cc---------------------------------------
Q 013890 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP---RL--------------------------------------- 202 (434)
Q Consensus 165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~---~~--------------------------------------- 202 (434)
+|+|||+|+.|+-+|..|++.|.+|.++++.+.... ..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~~ 81 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRTL 81 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccCC
Confidence 689999999999999999999999999987643110 00
Q ss_pred --------cC-HHHHHHHHHHHHHcCcEEEcCCeEEEEEec-CCCcEEEEEe--CC-----C--cEEEcCEEEEccCCcc
Q 013890 203 --------FT-ADIAAFYEGYYANKGIKIIKGTVAVGFTTN-ADGEVNEVKL--KD-----G--RTLEADIVVVGVGGRP 263 (434)
Q Consensus 203 --------~~-~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~-~~g~~~~v~~--~~-----g--~~i~~d~vv~a~G~~p 263 (434)
++ ..+.+.+.+...+.|++++.++ +..+... ..+....+++ .+ | .++.+++||.|.|..+
T Consensus 82 ~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S 160 (398)
T TIGR02028 82 KEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS 160 (398)
T ss_pred CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence 00 1122345556677899998775 6666421 1222233432 21 3 3789999999999876
Q ss_pred Ch
Q 013890 264 LI 265 (434)
Q Consensus 264 ~~ 265 (434)
..
T Consensus 161 ~v 162 (398)
T TIGR02028 161 RV 162 (398)
T ss_pred HH
Confidence 54
No 427
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.28 E-value=0.0014 Score=61.29 Aligned_cols=102 Identities=21% Similarity=0.289 Sum_probs=72.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc-c---------CHHHHHHHHHHHHHc--CcEEEcCCeEE
Q 013890 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-F---------TADIAAFYEGYYANK--GIKIIKGTVAV 229 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~-~---------~~~~~~~~~~~l~~~--gV~~~~~~~v~ 229 (434)
+.++++|+|+|+.|+-+...|-..-++|+++.+.+.|+-.. + -..+.+.+....+.. +++++. ++-.
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~e-Aec~ 132 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLE-AECT 132 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEe-cccE
Confidence 56899999999999999999998899999999888764211 1 245677777777666 455543 3445
Q ss_pred EEEecCCCcEEEE--EeCCC----cEEEcCEEEEccCCccChh
Q 013890 230 GFTTNADGEVNEV--KLKDG----RTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 230 ~i~~~~~g~~~~v--~~~~g----~~i~~d~vv~a~G~~p~~~ 266 (434)
.+++ +.+.+.+ .++++ -.+.+|.+|+|+|..+++.
T Consensus 133 ~iDp--~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TF 173 (491)
T KOG2495|consen 133 KIDP--DNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTF 173 (491)
T ss_pred eecc--cccEEEEeeeccCCCcceeeecccEEEEeccCCCCCC
Confidence 5655 3333333 33444 3688999999999988874
No 428
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.26 E-value=0.00037 Score=70.36 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=33.1
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.++||||||+|.+|++||..+++.|.+ |+|||+...
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~---v~liEk~~~ 40 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLE---PLIVEKQDK 40 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCc---EEEEecCCC
Confidence 368999999999999999999999987 999999865
No 429
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.25 E-value=0.0007 Score=70.73 Aligned_cols=34 Identities=26% Similarity=0.213 Sum_probs=32.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~ 195 (434)
.+++|+|||+|+.|+.+|..|++.|++|+++++.
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 5789999999999999999999999999999975
No 430
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.21 E-value=0.00062 Score=62.53 Aligned_cols=99 Identities=14% Similarity=0.236 Sum_probs=75.1
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+.+|||||..||-.+.-..+.|-+ |+++|-.+...-. +..+ + .+.++..+.+
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGse---VT~VEf~~~i~~~--------mD~E----i-----------sk~~qr~L~k 264 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSE---VTVVEFLDQIGGV--------MDGE----I-----------SKAFQRVLQK 264 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCe---EEEEEehhhhccc--------cCHH----H-----------HHHHHHHHHh
Confidence 46899999999999999999999876 9999988653211 1000 0 2356778888
Q ss_pred CCcEEEcCCeEEEEeCCCC-E--EEcC---CC--cEEEeceEEEccCCCcccc
Q 013890 85 KGIELILSTEIVRADIASK-T--LLSA---TG--LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~-~--v~~~---~~--~~~~~d~lilAtG~~~~~p 129 (434)
.++.|..++.|..+.+... . +.+. ++ +++++|.+++++|-+|+.-
T Consensus 265 QgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~ 317 (506)
T KOG1335|consen 265 QGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTE 317 (506)
T ss_pred cCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCccccc
Confidence 9999999999999987665 3 3332 22 5789999999999999753
No 431
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.20 E-value=0.00046 Score=66.25 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.||+|||||++|+.||..|+++|++ |+|+|+.+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~---V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVP---VILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCc---EEEEecccc
Confidence 3799999999999999999999987 999998754
No 432
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.19 E-value=0.0076 Score=61.41 Aligned_cols=35 Identities=31% Similarity=0.449 Sum_probs=32.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 013890 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 196 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~ 196 (434)
+..+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 56899999999999999999999999999999865
No 433
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.18 E-value=0.0006 Score=61.23 Aligned_cols=37 Identities=30% Similarity=0.460 Sum_probs=33.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC
Q 013890 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY 45 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~ 45 (434)
+|++|||+|.+|+..|..|+++|.+ |+|+||.++.+.
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~---VLIvekR~HIGG 38 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKR---VLIVEKRNHIGG 38 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCE---EEEEeccccCCC
Confidence 8999999999999999999998987 999999987553
No 434
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.13 E-value=0.00057 Score=63.70 Aligned_cols=35 Identities=23% Similarity=0.434 Sum_probs=32.1
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
+.+|||||||.+|+++|..|.++|++ |+|+|+...
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~---v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGID---VVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCe---EEEEeeccc
Confidence 36899999999999999999999998 999999654
No 435
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.13 E-value=0.0012 Score=62.56 Aligned_cols=73 Identities=21% Similarity=0.267 Sum_probs=57.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc------cCHH------HHHHHHHHHHHcCcEEEcCCeEE
Q 013890 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------FTAD------IAAFYEGYYANKGIKIIKGTVAV 229 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~------~~~~------~~~~~~~~l~~~gV~~~~~~~v~ 229 (434)
-.++++|||||..|++.|..|++.|.+|+++++.+.+..++ |+.. ++-.+.+....-+|++++.++|+
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~ 202 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVE 202 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeee
Confidence 35799999999999999999999999999999998876542 2221 22334445556789999999999
Q ss_pred EEEec
Q 013890 230 GFTTN 234 (434)
Q Consensus 230 ~i~~~ 234 (434)
+++++
T Consensus 203 ev~G~ 207 (622)
T COG1148 203 EVSGS 207 (622)
T ss_pred eeccc
Confidence 98763
No 436
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.12 E-value=0.0016 Score=62.94 Aligned_cols=97 Identities=16% Similarity=0.178 Sum_probs=65.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC------------------------------------------Cc
Q 013890 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM------------------------------------------PR 201 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~------------------------------------------~~ 201 (434)
-.|+|||+|..|+|.|.+.++.|.++.+++-...-. ..
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~ 84 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNS 84 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccC
Confidence 478999999999999999999999988876442110 00
Q ss_pred cc-----------CH-HHHHHHHHHHH-HcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 013890 202 LF-----------TA-DIAAFYEGYYA-NKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 202 ~~-----------~~-~~~~~~~~~l~-~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~ 261 (434)
.. |. .....+++.++ ..++.++.+ .|.++...++.++.+|.+.+|..+.|+.||++||.
T Consensus 85 sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGT 156 (621)
T COG0445 85 SKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT 156 (621)
T ss_pred CCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence 00 00 11223333333 346666655 45555542333589999999999999999999994
No 437
>PLN02529 lysine-specific histone demethylase 1
Probab=97.11 E-value=0.00068 Score=69.74 Aligned_cols=37 Identities=22% Similarity=0.330 Sum_probs=33.8
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~ 44 (434)
.+||+|||||++|++||..|+++|++ |+|+|+.+..+
T Consensus 160 ~~~v~viGaG~aGl~aA~~l~~~g~~---v~v~E~~~~~G 196 (738)
T PLN02529 160 EGSVIIVGAGLAGLAAARQLLSFGFK---VVVLEGRNRPG 196 (738)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCc---EEEEecCccCc
Confidence 57999999999999999999999987 99999997644
No 438
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.11 E-value=0.00091 Score=62.43 Aligned_cols=58 Identities=22% Similarity=0.434 Sum_probs=42.3
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-CCCC-CccccccCCCCCCCC
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-YERP-ALSKAYLFPEGTARL 63 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~-~~~~-~~~~~~~~~~~~~~~ 63 (434)
..+|+|+|||.+||++|++|++++. +..|+|+|..+..+ |-+. ....++++...+..+
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p-~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtl 70 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGP-DVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTL 70 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCC-CceEEEEecCCcccceeeeccCCCceeeccCCCcc
Confidence 4689999999999999999999874 56688899998753 3333 344555555554443
No 439
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.07 E-value=0.00066 Score=62.40 Aligned_cols=36 Identities=25% Similarity=0.460 Sum_probs=32.6
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
...||+|||||.+|-+.|..|++.|.+ |.||||+-.
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRr---VhVIERDl~ 79 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRR---VHVIERDLS 79 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcE---EEEEecccc
Confidence 458999999999999999999999977 999999943
No 440
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.06 E-value=0.00061 Score=71.47 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEeCCCC
Q 013890 7 KYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAV 42 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~--g~~~~~V~vie~~~~ 42 (434)
+|+|||||+||+++|..|++. |++ |+|+|+++.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~---V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHE---VTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCe---EEEEecCCC
Confidence 799999999999999999998 666 999999975
No 441
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.06 E-value=0.014 Score=54.64 Aligned_cols=117 Identities=23% Similarity=0.259 Sum_probs=76.9
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-------CCCCCccccccCCCCCCCCCC------------
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-------YERPALSKAYLFPEGTARLPG------------ 65 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~-------~~~~~~~~~~~~~~~~~~~~~------------ 65 (434)
.+||+|||||||||+||..++++|.+ |+|||+.+... -.||.+++.........+.|+
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~---V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~f 79 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRR---VLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARF 79 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCE---EEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhC
Confidence 68999999999999999999999987 99999998722 122322221110000111110
Q ss_pred -------c------ceec---CCCC---------CCCCHhHHHHCCcEEEcCCeEEEEeCCC--CEEEcCCCcEEEeceE
Q 013890 66 -------F------HVCV---GSGG---------ERLLPEWYKEKGIELILSTEIVRADIAS--KTLLSATGLIFKYQIL 118 (434)
Q Consensus 66 -------~------~~~~---~~~~---------~~~~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~~~~~~~~~~d~l 118 (434)
| .... |.-. .+.....+++.||+++.+++|..++.++ ..+.+.++.++.+|.+
T Consensus 80 t~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~l 159 (408)
T COG2081 80 TPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSL 159 (408)
T ss_pred CHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEE
Confidence 0 0000 0000 0112233456899999999999999876 4577778889999999
Q ss_pred EEccCC
Q 013890 119 VIATGS 124 (434)
Q Consensus 119 ilAtG~ 124 (434)
|+|||.
T Consensus 160 ilAtGG 165 (408)
T COG2081 160 ILATGG 165 (408)
T ss_pred EEecCC
Confidence 999994
No 442
>PLN02985 squalene monooxygenase
Probab=97.05 E-value=0.0095 Score=59.52 Aligned_cols=102 Identities=18% Similarity=0.232 Sum_probs=67.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc----c------------------------------------
Q 013890 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----L------------------------------------ 202 (434)
Q Consensus 163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~----~------------------------------------ 202 (434)
..+++|||+|..|+-+|..|++.|.+|+++++.+..... .
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~g~ 122 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDGK 122 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEECCE
Confidence 457999999999999999999999999999876321000 0
Q ss_pred -----c-----------------CHHHHHHHHHHHHHc-CcEEEcCCeEEEEEecCCCcEEEEEe--CCCcE--EEcCEE
Q 013890 203 -----F-----------------TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVNEVKL--KDGRT--LEADIV 255 (434)
Q Consensus 203 -----~-----------------~~~~~~~~~~~l~~~-gV~~~~~~~v~~i~~~~~g~~~~v~~--~~g~~--i~~d~v 255 (434)
+ ..++.+.+.+.+++. ||+++.+ ++.++.. +++.+.+|++ .+|++ +.+|+|
T Consensus 123 ~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~-~~~~v~gV~~~~~dG~~~~~~AdLV 200 (514)
T PLN02985 123 EAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIE-EKGVIKGVTYKNSAGEETTALAPLT 200 (514)
T ss_pred EEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEE-cCCEEEEEEEEcCCCCEEEEECCEE
Confidence 0 012334445555444 6888866 4555544 3454445554 46654 568999
Q ss_pred EEccCCccChh
Q 013890 256 VVGVGGRPLIS 266 (434)
Q Consensus 256 v~a~G~~p~~~ 266 (434)
|.|.|......
T Consensus 201 VgADG~~S~vR 211 (514)
T PLN02985 201 VVCDGCYSNLR 211 (514)
T ss_pred EECCCCchHHH
Confidence 99999876654
No 443
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.03 E-value=0.00089 Score=69.31 Aligned_cols=37 Identities=24% Similarity=0.407 Sum_probs=33.7
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~ 44 (434)
..+|+|||||++|++||+.|.+.|++ |+|+|+....+
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~---v~v~E~~~r~G 274 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFK---VVVLEGRARPG 274 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCc---EEEEeccccCC
Confidence 57899999999999999999999987 99999997654
No 444
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.02 E-value=0.00078 Score=73.79 Aligned_cols=36 Identities=31% Similarity=0.475 Sum_probs=33.1
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
..+||||||+|.||++||.++++.|.+ |+|+||.+.
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~---VivlEK~~~ 443 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQ---VILLEKEAK 443 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCc---EEEEEccCC
Confidence 358999999999999999999999987 999999875
No 445
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.02 E-value=0.0086 Score=59.24 Aligned_cols=96 Identities=27% Similarity=0.377 Sum_probs=66.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCC--------------c----------------ccC---------
Q 013890 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--------------R----------------LFT--------- 204 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~--------------~----------------~~~--------- 204 (434)
..|+|||+|..|+-+|..+++.|.+|.++++.+.... . ..+
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~ 81 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS 81 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3689999999999999999999999999876421100 0 001
Q ss_pred --------------------------------------HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCC
Q 013890 205 --------------------------------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKD 246 (434)
Q Consensus 205 --------------------------------------~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~ 246 (434)
..+.+.+.+.+++.||+++.+ .+..+.. +++++..+.. +
T Consensus 82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~-~~g~v~Gv~~-~ 158 (466)
T PRK08401 82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAI-KNGKAYGVFL-D 158 (466)
T ss_pred HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEe-eCCEEEEEEE-C
Confidence 123344445566678888765 6666654 3566666665 4
Q ss_pred CcEEEcCEEEEccCCc
Q 013890 247 GRTLEADIVVVGVGGR 262 (434)
Q Consensus 247 g~~i~~d~vv~a~G~~ 262 (434)
++.+.++.||+|||-.
T Consensus 159 g~~i~a~~VVLATGG~ 174 (466)
T PRK08401 159 GELLKFDATVIATGGF 174 (466)
T ss_pred CEEEEeCeEEECCCcC
Confidence 5679999999999953
No 446
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.01 E-value=0.0021 Score=62.55 Aligned_cols=88 Identities=20% Similarity=0.180 Sum_probs=68.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc--------ccCHHHHHHHHHHHHHcCcEEEcCCeEE-EEE
Q 013890 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------LFTADIAAFYEGYYANKGIKIIKGTVAV-GFT 232 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~gV~~~~~~~v~-~i~ 232 (434)
.+++|.|||+|+.|+.+|..|++.|+.|+++++.+..... .++.++.+...+.|++.|++|+.++.+- .+.
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it 201 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDIT 201 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcCC
Confidence 4689999999999999999999999999999888765322 1466888999999999999999997753 221
Q ss_pred ecCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 013890 233 TNADGEVNEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 233 ~~~~g~~~~v~~~~g~~i~~d~vv~a~G~ 261 (434)
+++= .-+.|.|++++|.
T Consensus 202 -----------~~~L-~~e~Dav~l~~G~ 218 (457)
T COG0493 202 -----------LEEL-LKEYDAVFLATGA 218 (457)
T ss_pred -----------HHHH-HHhhCEEEEeccc
Confidence 1111 1234999999994
No 447
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.00 E-value=0.00082 Score=66.79 Aligned_cols=56 Identities=13% Similarity=0.275 Sum_probs=41.1
Q ss_pred HHHHHcCcEEEcCCeEEEEEecCC--CcEEEEEeC---CCc--EEEcCEEEEccCCccChhhh
Q 013890 213 GYYANKGIKIIKGTVAVGFTTNAD--GEVNEVKLK---DGR--TLEADIVVVGVGGRPLISLF 268 (434)
Q Consensus 213 ~~l~~~gV~~~~~~~v~~i~~~~~--g~~~~v~~~---~g~--~i~~d~vv~a~G~~p~~~~~ 268 (434)
+.++..+++++.++.|.+|..+++ +++..|... +|+ ++.|+.||+|.|-.-+..++
T Consensus 222 ~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLL 284 (544)
T TIGR02462 222 DDAPSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQIL 284 (544)
T ss_pred hhccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHH
Confidence 334466699999999999987544 356666443 343 58899999999977776655
No 448
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.00 E-value=0.014 Score=57.34 Aligned_cols=102 Identities=19% Similarity=0.269 Sum_probs=67.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC---Ccc----------c--------------------------
Q 013890 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM---PRL----------F-------------------------- 203 (434)
Q Consensus 163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~---~~~----------~-------------------------- 203 (434)
.-.|+|||+|+.|+-+|..|++.|.+|.++++.+... ... +
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~~ 118 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGK 118 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEecc
Confidence 3579999999999999999999999999998764210 000 0
Q ss_pred -----------C-HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCC-CcEEEEEeCC-------C--cEEEcCEEEEccCC
Q 013890 204 -----------T-ADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD-GEVNEVKLKD-------G--RTLEADIVVVGVGG 261 (434)
Q Consensus 204 -----------~-~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~-g~~~~v~~~~-------g--~~i~~d~vv~a~G~ 261 (434)
+ ..+.+.+.+...+.|++++.+ .+.++....+ +....+.+.+ | .++.+|.||-|.|.
T Consensus 119 ~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~ 197 (450)
T PLN00093 119 TLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGA 197 (450)
T ss_pred cCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCc
Confidence 0 012234555667789999865 4667753211 1122344321 3 47999999999997
Q ss_pred ccCh
Q 013890 262 RPLI 265 (434)
Q Consensus 262 ~p~~ 265 (434)
....
T Consensus 198 ~S~v 201 (450)
T PLN00093 198 NSRV 201 (450)
T ss_pred chHH
Confidence 6544
No 449
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.98 E-value=0.005 Score=61.66 Aligned_cols=102 Identities=23% Similarity=0.404 Sum_probs=76.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC---CCeEEEEeeCCcc------CCcccC-----HHHHHHHHHHHHHcCcEEEcCCeE
Q 013890 163 NGKAVVVGGGYIGLELSAALKIN---NIDVSMVYPEPWC------MPRLFT-----ADIAAFYEGYYANKGIKIIKGTVA 228 (434)
Q Consensus 163 ~~~vvVvG~g~~g~e~a~~l~~~---g~~v~~~~~~~~~------~~~~~~-----~~~~~~~~~~l~~~gV~~~~~~~v 228 (434)
..+++|||.|..|..+...+.+. -..+|++...++. +.+.+. +++.-.-.++.+++||+++.+.++
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v 82 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV 82 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence 46899999999999888888773 3568887655432 111121 233334456889999999999999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh
Q 013890 229 VGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF 268 (434)
Q Consensus 229 ~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~ 268 (434)
..|.. +. ..|.+++|.++.+|.+++|||..|.....
T Consensus 83 ~~idr--~~--k~V~t~~g~~~~YDkLilATGS~pfi~Pi 118 (793)
T COG1251 83 IQIDR--AN--KVVTTDAGRTVSYDKLIIATGSYPFILPI 118 (793)
T ss_pred EEecc--Cc--ceEEccCCcEeecceeEEecCccccccCC
Confidence 99976 33 46888999999999999999999987553
No 450
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=96.92 E-value=0.0076 Score=53.09 Aligned_cols=102 Identities=20% Similarity=0.244 Sum_probs=67.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc----------------c---CHHHHHHHHHH-----------
Q 013890 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL----------------F---TADIAAFYEGY----------- 214 (434)
Q Consensus 165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~----------------~---~~~~~~~~~~~----------- 214 (434)
+|+|||+|..|+-+|..|...|.+|++++++.....++ | ++...+.+...
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~ 82 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP 82 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence 68999999999999999999999999999875433221 0 11122111111
Q ss_pred ------------------------------HHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-cEEEcCEEEEccCCcc
Q 013890 215 ------------------------------YANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG-RTLEADIVVVGVGGRP 263 (434)
Q Consensus 215 ------------------------------l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g-~~i~~d~vv~a~G~~p 263 (434)
+.....++.++++|+++... ++...+.+++| ....+|.|++++..--
T Consensus 83 ~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LAtdL~V~~~~rVt~v~~~--~~~W~l~~~~g~~~~~~d~vvla~PAPQ 160 (331)
T COG3380 83 AVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLATDLTVVLETRVTEVART--DNDWTLHTDDGTRHTQFDDVVLAIPAPQ 160 (331)
T ss_pred cccccccCCCCCCCCCCccccCcchHHHHHHHhccchhhhhhhhhhheec--CCeeEEEecCCCcccccceEEEecCCCc
Confidence 11224567777888888663 34467888666 4678999999987543
Q ss_pred Chhhh
Q 013890 264 LISLF 268 (434)
Q Consensus 264 ~~~~~ 268 (434)
...++
T Consensus 161 ~~~LL 165 (331)
T COG3380 161 TATLL 165 (331)
T ss_pred chhhc
Confidence 33444
No 451
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.0081 Score=54.72 Aligned_cols=101 Identities=23% Similarity=0.293 Sum_probs=78.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEe-eC----------Ccc--CCcccCHHHHHHHHHHHHHcCcEEEcCCeE
Q 013890 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVY-PE----------PWC--MPRLFTADIAAFYEGYYANKGIKIIKGTVA 228 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~-~~----------~~~--~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v 228 (434)
.+-.++|||+|+.|.-.|-..++.|.+.-++. |- ..+ .+....+.++..+.+..++..|.++...+.
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra 289 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRA 289 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhh
Confidence 45689999999999999999999887755542 10 001 122246789999999999999999988887
Q ss_pred EEEEec-CCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890 229 VGFTTN-ADGEVNEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 229 ~~i~~~-~~g~~~~v~~~~g~~i~~d~vv~a~G~~ 262 (434)
+++++. ..+....|++++|..+.+..+|++||.+
T Consensus 290 ~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 290 SKLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred hcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 787763 2355678999999999999999999954
No 452
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=96.84 E-value=0.002 Score=57.01 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=32.0
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcC-CC--CCcEEEEeCCCC
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQG-VK--PGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g-~~--~~~V~vie~~~~ 42 (434)
..++++|||||..|.++|++|.+.+ ++ ...|++||+...
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~I 50 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEI 50 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccc
Confidence 3579999999999999999999875 22 235999999865
No 453
>PRK07804 L-aspartate oxidase; Provisional
Probab=96.83 E-value=0.018 Score=58.03 Aligned_cols=98 Identities=28% Similarity=0.373 Sum_probs=69.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCC---------------c----------------c----------
Q 013890 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP---------------R----------------L---------- 202 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~---------------~----------------~---------- 202 (434)
-.|+|||+|..|+-+|..+++.|.+|.++++.+.... . .
T Consensus 17 ~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~~~ 96 (541)
T PRK07804 17 ADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRSLV 96 (541)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 4799999999999999999999999999876532100 0 0
Q ss_pred ----------------c-----------------------------CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCC
Q 013890 203 ----------------F-----------------------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 237 (434)
Q Consensus 203 ----------------~-----------------------------~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g 237 (434)
| ...+.+.+.+.+++.||+++.++.+.++..++++
T Consensus 97 ~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g 176 (541)
T PRK07804 97 AEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDLLTDGTG 176 (541)
T ss_pred HHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCC
Confidence 0 0123344455566778888889899988764456
Q ss_pred cEEEEEeC-------CC-cEEEcCEEEEccCC
Q 013890 238 EVNEVKLK-------DG-RTLEADIVVVGVGG 261 (434)
Q Consensus 238 ~~~~v~~~-------~g-~~i~~d~vv~a~G~ 261 (434)
++.++... ++ ..+.++.||+|+|-
T Consensus 177 ~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG 208 (541)
T PRK07804 177 AVAGVTLHVLGEGSPDGVGAVHAPAVVLATGG 208 (541)
T ss_pred eEEEEEEEeccCCCCCcEEEEEcCeEEECCCC
Confidence 77776553 22 36889999999994
No 454
>PRK08275 putative oxidoreductase; Provisional
Probab=96.83 E-value=0.022 Score=57.68 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=40.8
Q ss_pred HHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEEcCEEEEccCCc
Q 013890 208 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL---KDGR--TLEADIVVVGVGGR 262 (434)
Q Consensus 208 ~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vv~a~G~~ 262 (434)
.+.+.+.+++.||+++.++.+.++..++++++.++.. .+|+ .+.++.||+|||-.
T Consensus 140 ~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (554)
T PRK08275 140 KKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAA 199 (554)
T ss_pred HHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCc
Confidence 3455555677899999999999997643677777653 3564 47899999999954
No 455
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=96.77 E-value=0.024 Score=57.66 Aligned_cols=50 Identities=26% Similarity=0.380 Sum_probs=37.4
Q ss_pred HHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEEcCEEEEccCC
Q 013890 211 YEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL---KDGR--TLEADIVVVGVGG 261 (434)
Q Consensus 211 ~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vv~a~G~ 261 (434)
+.+.+++.||+++.++.++++.. +++++.++.. .+|+ .+.++.||+|+|-
T Consensus 135 L~~~~~~~gv~i~~~~~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG 189 (566)
T TIGR01812 135 LYEQCLKLGVSFFNEYFALDLIH-DDGRVRGVVAYDLKTGEIVFFRAKAVVLATGG 189 (566)
T ss_pred HHHHHHHcCCEEEeccEEEEEEE-eCCEEEEEEEEECCCCcEEEEECCeEEECCCc
Confidence 34445567899999999999876 3677776654 3564 5889999999994
No 456
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.72 E-value=0.0015 Score=65.58 Aligned_cols=58 Identities=16% Similarity=0.259 Sum_probs=41.8
Q ss_pred HHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC--CC---c-EEEcCEEEEccCCccChhhh
Q 013890 210 FYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK--DG---R-TLEADIVVVGVGGRPLISLF 268 (434)
Q Consensus 210 ~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~--~g---~-~i~~d~vv~a~G~~p~~~~~ 268 (434)
.+...+++.++++.+++.++.+.. +.++...+... ++ + ...++.||+|.|...+..++
T Consensus 208 ~l~~a~~~~nl~v~t~a~v~ri~~-~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL 271 (542)
T COG2303 208 YLKPALKRPNLTLLTGARVRRILL-EGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLL 271 (542)
T ss_pred cchhHhcCCceEEecCCEEEEEEE-ECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHH
Confidence 444467778899999999999987 34555555553 33 1 25679999999987777765
No 457
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=96.72 E-value=0.023 Score=58.41 Aligned_cols=103 Identities=24% Similarity=0.337 Sum_probs=70.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC-CCeEEEEeeCCccCCc----------------------------------c-----
Q 013890 163 NGKAVVVGGGYIGLELSAALKIN-NIDVSMVYPEPWCMPR----------------------------------L----- 202 (434)
Q Consensus 163 ~~~vvVvG~g~~g~e~a~~l~~~-g~~v~~~~~~~~~~~~----------------------------------~----- 202 (434)
.-.|+|||+|+.|+-+|..|+++ |.+|.++++.+..... +
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~ 111 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDP 111 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCC
Confidence 45899999999999999999995 9999999876432100 0
Q ss_pred --------------------------cC-HHHHHHHHHHHHHcC--cEEEcCCeEEEEEecCCC-cEEEEEeC------C
Q 013890 203 --------------------------FT-ADIAAFYEGYYANKG--IKIIKGTVAVGFTTNADG-EVNEVKLK------D 246 (434)
Q Consensus 203 --------------------------~~-~~~~~~~~~~l~~~g--V~~~~~~~v~~i~~~~~g-~~~~v~~~------~ 246 (434)
+. ..+.+.+.+.+++.| +++..++++++++.++++ ....+++. +
T Consensus 112 ~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~ 191 (634)
T PRK08294 112 ADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHE 191 (634)
T ss_pred ccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCC
Confidence 00 023344555566665 577889999999764322 22345553 3
Q ss_pred C--cEEEcCEEEEccCCccCh
Q 013890 247 G--RTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 247 g--~~i~~d~vv~a~G~~p~~ 265 (434)
| +++.+|+||-|=|.+...
T Consensus 192 g~~~tv~A~~lVGaDGa~S~V 212 (634)
T PRK08294 192 GEEETVRAKYVVGCDGARSRV 212 (634)
T ss_pred CceEEEEeCEEEECCCCchHH
Confidence 5 579999999999976544
No 458
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=96.70 E-value=0.03 Score=56.04 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 013890 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 196 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~ 196 (434)
-.|+|||||.+|+-+|..++++|.+|.++++.+
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d 39 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGRGLSVLLCEQDD 39 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 479999999999999999999999999999864
No 459
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=96.64 E-value=0.034 Score=56.90 Aligned_cols=96 Identities=13% Similarity=0.190 Sum_probs=66.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCeEEEEeeCCccCCcc--------------------------------cCH----
Q 013890 164 GKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPRL--------------------------------FTA---- 205 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~--g~~v~~~~~~~~~~~~~--------------------------------~~~---- 205 (434)
-.|+|||+|..|+-+|..+++. |.+|.++++.+...... .++
T Consensus 12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv~ 91 (608)
T PRK06854 12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLVY 91 (608)
T ss_pred eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHHHH
Confidence 3699999999999999999998 99999988653210000 000
Q ss_pred -----------------------------------------HHHHHHHHHHHHcC-cEEEcCCeEEEEEecCCCcEEEEE
Q 013890 206 -----------------------------------------DIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVNEVK 243 (434)
Q Consensus 206 -----------------------------------------~~~~~~~~~l~~~g-V~~~~~~~v~~i~~~~~g~~~~v~ 243 (434)
.+...+.+.+++.| |+++.++.+.++.. +++++.++.
T Consensus 92 ~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~-~~g~v~Gv~ 170 (608)
T PRK06854 92 DIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLV-DDNRIAGAV 170 (608)
T ss_pred HHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEE-eCCEEEEEE
Confidence 11222333444555 99999999999875 356666653
Q ss_pred ---eCCCc--EEEcCEEEEccC
Q 013890 244 ---LKDGR--TLEADIVVVGVG 260 (434)
Q Consensus 244 ---~~~g~--~i~~d~vv~a~G 260 (434)
..+++ .+.++.||+|+|
T Consensus 171 ~~~~~~g~~~~i~AkaVILATG 192 (608)
T PRK06854 171 GFSVRENKFYVFKAKAVIVATG 192 (608)
T ss_pred EEEccCCcEEEEECCEEEECCC
Confidence 23554 689999999999
No 460
>PRK06175 L-aspartate oxidase; Provisional
Probab=96.50 E-value=0.036 Score=54.28 Aligned_cols=53 Identities=21% Similarity=0.317 Sum_probs=37.8
Q ss_pred HHHHHHHHHH-cCcEEEcCCeEEEEEecCCCcEEEEE-eCCCc--EEEcCEEEEccCC
Q 013890 208 AAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVNEVK-LKDGR--TLEADIVVVGVGG 261 (434)
Q Consensus 208 ~~~~~~~l~~-~gV~~~~~~~v~~i~~~~~g~~~~v~-~~~g~--~i~~d~vv~a~G~ 261 (434)
.+.+.+.+++ .||+++.++.+.++.. +++++.++. ..+++ .+.++.||+|+|-
T Consensus 131 ~~~L~~~~~~~~gV~i~~~t~v~~Li~-~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG 187 (433)
T PRK06175 131 EKILLKKVKKRKNITIIENCYLVDIIE-NDNTCIGAICLKDNKQINIYSKVTILATGG 187 (433)
T ss_pred HHHHHHHHHhcCCCEEEECcEeeeeEe-cCCEEEEEEEEECCcEEEEEcCeEEEccCc
Confidence 3444445544 5999999999999875 356666654 33444 5889999999995
No 461
>PLN03000 amine oxidase
Probab=96.50 E-value=0.0039 Score=64.84 Aligned_cols=37 Identities=27% Similarity=0.395 Sum_probs=33.6
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~ 44 (434)
..+|+|||||++|++||..|++.|++ |+|+|+.+..+
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~---V~VlE~~~riG 220 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFK---VTVLEGRKRPG 220 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCc---EEEEEccCcCC
Confidence 47999999999999999999999987 99999998744
No 462
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.50 E-value=0.037 Score=55.34 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 013890 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 196 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~ 196 (434)
-.|+|||||.+|+-+|..|+++|.+|.++++.+
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d 39 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGRGLKVLLCEKDD 39 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence 479999999999999999999999999999874
No 463
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=96.49 E-value=0.041 Score=56.20 Aligned_cols=43 Identities=19% Similarity=0.294 Sum_probs=33.7
Q ss_pred CcEEEcCCeEEEEEecCCCcEEEEEeC---CCc--EEEcCEEEEccCC
Q 013890 219 GIKIIKGTVAVGFTTNADGEVNEVKLK---DGR--TLEADIVVVGVGG 261 (434)
Q Consensus 219 gV~~~~~~~v~~i~~~~~g~~~~v~~~---~g~--~i~~d~vv~a~G~ 261 (434)
||+++.++.+.++..++++++.+|... +|+ .+.++.||+|||-
T Consensus 147 gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG 194 (603)
T TIGR01811 147 LVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGG 194 (603)
T ss_pred CcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 789999999998876455678887753 453 5789999999984
No 464
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.49 E-value=0.044 Score=56.01 Aligned_cols=52 Identities=19% Similarity=0.271 Sum_probs=38.3
Q ss_pred HHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEEcCEEEEccCC
Q 013890 210 FYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL---KDGR--TLEADIVVVGVGG 261 (434)
Q Consensus 210 ~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vv~a~G~ 261 (434)
.+.+.+++.||+++.++.+.++..+++|++.++.. .+|+ .+.++.||+|||-
T Consensus 154 ~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 210 (598)
T PRK09078 154 TLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGG 210 (598)
T ss_pred HHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 34444566789999999999887644477888764 3554 6789999999993
No 465
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.47 E-value=0.041 Score=55.85 Aligned_cols=50 Identities=10% Similarity=0.074 Sum_probs=37.4
Q ss_pred HHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC---CCc--EEEcCEEEEccC
Q 013890 210 FYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK---DGR--TLEADIVVVGVG 260 (434)
Q Consensus 210 ~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~---~g~--~i~~d~vv~a~G 260 (434)
.+.+.+++.||+++.++.++++.. ++|++.++... +++ .+.++.||+|||
T Consensus 141 ~L~~~~~~~gv~i~~~~~~~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 195 (566)
T PRK06452 141 TLFERTSGLNVDFYNEWFSLDLVT-DNKKVVGIVAMQMKTLTPFFFKTKAVVLATG 195 (566)
T ss_pred HHHHHHHhCCCEEEeCcEEEEEEE-ECCEEEEEEEEECCCCeEEEEEeCeEEECCC
Confidence 344445567899999999998876 46888887653 332 578999999999
No 466
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=96.46 E-value=0.039 Score=55.02 Aligned_cols=56 Identities=29% Similarity=0.332 Sum_probs=39.6
Q ss_pred HHHHHHHHHHH-cCcEEEcCCeEEEEEecCCCcEEEEEeCC-C--cEEEcCEEEEccCCcc
Q 013890 207 IAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVNEVKLKD-G--RTLEADIVVVGVGGRP 263 (434)
Q Consensus 207 ~~~~~~~~l~~-~gV~~~~~~~v~~i~~~~~g~~~~v~~~~-g--~~i~~d~vv~a~G~~p 263 (434)
+.+.+.+.+++ .||+++.++.++++.. +++.+.++...+ + ..+.++.||+|+|-..
T Consensus 130 l~~~L~~~~~~~~gi~i~~~~~v~~l~~-~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 130 VITTLVKKALNHPNIRIIEGENALDLLI-ETGRVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHhcCCcEEEECeEeeeeec-cCCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 33445555555 5899999999999876 356666665543 3 3689999999999543
No 467
>PF14721 AIF_C: Apoptosis-inducing factor, mitochondrion-associated, C-term; PDB: 3GD4_A 1GV4_A 3GD3_A 1M6I_A.
Probab=96.46 E-value=0.024 Score=43.45 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=21.2
Q ss_pred HHHHHhccCCCCcccCCCCCCeeEEee-cCcceEEeecC
Q 013890 325 AVKTIMATEGGKTVTGYDYLPYFYSRA-FDLSWQFYGDN 362 (434)
Q Consensus 325 aa~~i~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~G~~ 362 (434)
|++||.+.. .+|.++|+||+.. |++.+..+|.-
T Consensus 1 AG~NM~ga~-----~py~hq~~fwSdlgp~vgyeAvG~~ 34 (133)
T PF14721_consen 1 AGENMTGAN-----KPYWHQSMFWSDLGPDVGYEAVGIV 34 (133)
T ss_dssp HHHHHTTT--------S-S--EEEEESSTTEEEEEEES-
T ss_pred CCccccCCC-----CcccccchhHhhcCCCcCeEEeeec
Confidence 567888754 7899999999998 58888888854
No 468
>PLN02785 Protein HOTHEAD
Probab=96.44 E-value=0.0037 Score=63.35 Aligned_cols=34 Identities=18% Similarity=0.557 Sum_probs=30.7
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.||+||||||.||+.+|..|.+ +.+ |+|||+...
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~---VLllE~G~~ 88 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQ-NFS---VLLLERGGV 88 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhc-CCc---EEEEecCCC
Confidence 5999999999999999999999 455 999999863
No 469
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.43 E-value=0.016 Score=57.25 Aligned_cols=82 Identities=24% Similarity=0.194 Sum_probs=58.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEE
Q 013890 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNE 241 (434)
Q Consensus 162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~ 241 (434)
.+++++|+|+|.+|+.+|..|.+.|++|+++++... ..+ +...+.+.+.|++++.+.....
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~-------~~~-~~~~~~l~~~~~~~~~~~~~~~----------- 64 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEE-------DQL-KEALEELGELGIELVLGEYPEE----------- 64 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-------HHH-HHHHHHHHhcCCEEEeCCcchh-----------
Confidence 478999999999999999999999999999976531 122 2223446677877665433210
Q ss_pred EEeCCCcEEEcCEEEEccCCccChhhh
Q 013890 242 VKLKDGRTLEADIVVVGVGGRPLISLF 268 (434)
Q Consensus 242 v~~~~g~~i~~d~vv~a~G~~p~~~~~ 268 (434)
..-.+|.||.++|..|+.+.+
T Consensus 65 ------~~~~~d~vv~~~g~~~~~~~~ 85 (450)
T PRK14106 65 ------FLEGVDLVVVSPGVPLDSPPV 85 (450)
T ss_pred ------HhhcCCEEEECCCCCCCCHHH
Confidence 012479999999988887755
No 470
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.39 E-value=0.015 Score=57.42 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=31.7
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
+.++++|+|+|..|+++|..|+++|++ |+++|++.
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~---V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAK---VILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCc
Confidence 457899999999999999999999987 99998874
No 471
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.39 E-value=0.0066 Score=42.24 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=29.5
Q ss_pred EECCCHHHHHHHHHHHHCCCeEEEEeeCCccCC
Q 013890 168 VVGGGYIGLELSAALKINNIDVSMVYPEPWCMP 200 (434)
Q Consensus 168 VvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~ 200 (434)
|||+|.+|+-+|..|.+.|.+|+++++.+.+..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG 33 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGG 33 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSG
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCc
Confidence 799999999999999999999999999887654
No 472
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.37 E-value=0.036 Score=53.20 Aligned_cols=101 Identities=23% Similarity=0.306 Sum_probs=62.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC---CeEEEEeeCCccCCcc--------------------c----CHH----------
Q 013890 164 GKAVVVGGGYIGLELSAALKINN---IDVSMVYPEPWCMPRL--------------------F----TAD---------- 206 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g---~~v~~~~~~~~~~~~~--------------------~----~~~---------- 206 (434)
.+|+|||+|++|+.+|..|.+.- ..++++++.+.+.... + +.+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 47999999999999999998752 1277777664432100 0 111
Q ss_pred ------------------------HHHHHHHHHHHcC---cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEcc
Q 013890 207 ------------------------IAAFYEGYYANKG---IKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGV 259 (434)
Q Consensus 207 ------------------------~~~~~~~~l~~~g---V~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~ 259 (434)
+.+.+...+++.- |.++ .++...+...+++....+...+|+...||.+|+||
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~-~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat 160 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTI-REEATSVRQDTNAGGYLVTTADGPSEIADIIVLAT 160 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEE-eeeeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence 2222222333322 4333 33444444433566677888999999999999999
Q ss_pred CCccCh
Q 013890 260 GGRPLI 265 (434)
Q Consensus 260 G~~p~~ 265 (434)
|..+..
T Consensus 161 gh~~~~ 166 (474)
T COG4529 161 GHSAPP 166 (474)
T ss_pred cCCCCC
Confidence 966554
No 473
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.36 E-value=0.0031 Score=63.57 Aligned_cols=58 Identities=14% Similarity=0.226 Sum_probs=42.1
Q ss_pred HHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-c---EEEcCEEEEccCCccChhhh
Q 013890 210 FYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG-R---TLEADIVVVGVGGRPLISLF 268 (434)
Q Consensus 210 ~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g-~---~i~~d~vv~a~G~~p~~~~~ 268 (434)
.+....++.|++++.++.|.+|..+ ++++++|++.++ + .+.++.||+|.|.--...++
T Consensus 199 ~l~~a~~r~nl~i~~~~~V~rI~~~-~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LL 260 (532)
T TIGR01810 199 YLHPAMKRPNLEVQTRAFVTKINFE-GNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLL 260 (532)
T ss_pred HhhhhccCCCeEEEeCCEEEEEEec-CCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHH
Confidence 4444445678999999999999873 667788877443 2 35789999999965444444
No 474
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.34 E-value=0.056 Score=55.64 Aligned_cols=47 Identities=26% Similarity=0.400 Sum_probs=36.4
Q ss_pred HHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC---CCc--EEEcCEEEEccCC
Q 013890 214 YYANKGIKIIKGTVAVGFTTNADGEVNEVKLK---DGR--TLEADIVVVGVGG 261 (434)
Q Consensus 214 ~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~---~g~--~i~~d~vv~a~G~ 261 (434)
.+++.||+++.++.+.++.. +++++.+|... +|+ .+.++.||+|||-
T Consensus 179 ~~~~~gV~i~~~t~v~~Li~-d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG 230 (640)
T PRK07573 179 QIAAGTVKMYTRTEMLDLVV-VDGRARGIVARNLVTGEIERHTADAVVLATGG 230 (640)
T ss_pred HHHhcCCEEEeceEEEEEEE-eCCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence 45567899999999998876 36777777653 453 5889999999994
No 475
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.32 E-value=0.088 Score=53.64 Aligned_cols=56 Identities=20% Similarity=0.272 Sum_probs=41.2
Q ss_pred HHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC-CCc--EEEcC-EEEEccC-CccChhhhh
Q 013890 214 YYANKGIKIIKGTVAVGFTTNADGEVNEVKLK-DGR--TLEAD-IVVVGVG-GRPLISLFK 269 (434)
Q Consensus 214 ~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~-~g~--~i~~d-~vv~a~G-~~p~~~~~~ 269 (434)
..++.|+++++++.++++..+++|++.+|... +++ .+.++ .||+|+| +.-|.++++
T Consensus 222 ~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~ 282 (584)
T PRK12835 222 ALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRK 282 (584)
T ss_pred HHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHH
Confidence 44567899999999999987667888887653 343 46786 5889888 666666654
No 476
>PLN02976 amine oxidase
Probab=96.32 E-value=0.0055 Score=66.44 Aligned_cols=36 Identities=22% Similarity=0.417 Sum_probs=32.9
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
.++|+|||||++|+++|..|.+.|++ |+|+|+.+..
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~---V~VlEa~~~v 728 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFS---VTVLEARSRI 728 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCc---EEEEeeccCC
Confidence 47999999999999999999999987 9999998664
No 477
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=96.27 E-value=0.029 Score=52.68 Aligned_cols=35 Identities=37% Similarity=0.540 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc
Q 013890 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 197 (434)
Q Consensus 163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~ 197 (434)
..+|+|||||..|+-.|..|.+.|.+|.+++.+..
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 35899999999999999999999999999987543
No 478
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.25 E-value=0.019 Score=54.55 Aligned_cols=32 Identities=28% Similarity=0.308 Sum_probs=28.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~ 195 (434)
-.|+|||+|..|+|.|.+.++.|.+.++++..
T Consensus 29 ~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred ccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 47999999999999999999999998887654
No 479
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.19 E-value=0.073 Score=53.85 Aligned_cols=52 Identities=21% Similarity=0.395 Sum_probs=37.3
Q ss_pred HHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEEcCEEEEccCC
Q 013890 210 FYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL---KDGR--TLEADIVVVGVGG 261 (434)
Q Consensus 210 ~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vv~a~G~ 261 (434)
.+.+.+++.||+++.++.+.++..++++++.++.. .+|+ .+.++.||+|||-
T Consensus 139 ~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 195 (543)
T PRK06263 139 GLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGG 195 (543)
T ss_pred HHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCC
Confidence 34445556789999999999987644444766653 4554 5889999999994
No 480
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.16 E-value=0.082 Score=53.86 Aligned_cols=52 Identities=21% Similarity=0.310 Sum_probs=38.3
Q ss_pred HHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEEcCEEEEccCCc
Q 013890 210 FYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL---KDGR--TLEADIVVVGVGGR 262 (434)
Q Consensus 210 ~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vv~a~G~~ 262 (434)
.+.+.+++.||+++.++.+.++.. +++++.++.. .+|+ .+.++.||+|+|--
T Consensus 140 ~L~~~~~~~gi~i~~~t~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~ 196 (575)
T PRK05945 140 ELVNNLRRYGVTIYDEWYVMRLIL-EDNQAKGVVMYHIADGRLEVVRAKAVMFATGGY 196 (575)
T ss_pred HHHHHHhhCCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence 345556677899999999999875 3676666642 4554 58899999999953
No 481
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=96.16 E-value=0.0056 Score=55.55 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=32.1
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCC-CCcEEEEeCCCCCC
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGVK-PGELAIISKEAVAP 44 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~-~~~V~vie~~~~~~ 44 (434)
.+||+|||||..|.+.|..|.++-.+ ..+|+|+|+++...
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtyt 126 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYT 126 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCccc
Confidence 57999999999999999999875221 13599999997643
No 482
>PTZ00367 squalene epoxidase; Provisional
Probab=96.13 E-value=0.06 Score=54.39 Aligned_cols=33 Identities=27% Similarity=0.337 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 013890 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 196 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~ 196 (434)
-+++|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 34 ~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 479999999999999999999999999999864
No 483
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.09 E-value=0.11 Score=52.98 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=28.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~ 195 (434)
-.|+|||+|..|+-.|..+++.|.+|.++++.
T Consensus 13 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~ 44 (591)
T PRK07057 13 FDVVIVGAGGSGMRASLQLARAGLSVAVLSKV 44 (591)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence 47999999999999999999999999998874
No 484
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.06 E-value=0.031 Score=55.34 Aligned_cols=136 Identities=18% Similarity=0.152 Sum_probs=74.7
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHCC
Q 013890 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 86 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (434)
+|+|||.|++|+++|+.|+++|++ |+++|++....+ ....+.+++.|
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~---V~~~D~~~~~~~------------------------------~~~~~~l~~~g 48 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWE---VVVSDRNDSPEL------------------------------LERQQELEQEG 48 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCE---EEEECCCCchhh------------------------------HHHHHHHHHcC
Confidence 589999999999999999999987 999998753110 11123456678
Q ss_pred cEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcE
Q 013890 87 IELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKA 166 (434)
Q Consensus 87 v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v 166 (434)
+.+..+... +.+..... .-.+|.+|+.+|..+..|.. ......++-.....+-+. .... ..+.+
T Consensus 49 i~~~~g~~~---~~~~~~~~-----~~~~d~vv~s~gi~~~~~~~---~~a~~~~i~v~~~~~~~~---~~~~--~~~~I 112 (459)
T PRK02705 49 ITVKLGKPL---ELESFQPW-----LDQPDLVVVSPGIPWDHPTL---VELRERGIEVIGEIELAW---RALK--HIPWV 112 (459)
T ss_pred CEEEECCcc---chhhhhHH-----hhcCCEEEECCCCCCCCHHH---HHHHHcCCcEEEhHHHHH---Hhhc--CCCEE
Confidence 888765321 11100000 12468888888877654431 111112222222222221 1111 23456
Q ss_pred EEECCC---HHHHHHHHHHHHCCCeEEE
Q 013890 167 VVVGGG---YIGLELSAALKINNIDVSM 191 (434)
Q Consensus 167 vVvG~g---~~g~e~a~~l~~~g~~v~~ 191 (434)
.|-|+- -+.--++..|...|.+...
T Consensus 113 ~VTGT~GKTTTt~ml~~iL~~~g~~~~~ 140 (459)
T PRK02705 113 GITGTNGKTTVTALLAHILQAAGLNAPA 140 (459)
T ss_pred EEeCCCchHHHHHHHHHHHHHcCCCeEE
Confidence 666642 2333456677777776544
No 485
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.06 E-value=0.023 Score=59.90 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHHHC--CCeEEEEeeCCc
Q 013890 165 KAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPW 197 (434)
Q Consensus 165 ~vvVvG~g~~g~e~a~~l~~~--g~~v~~~~~~~~ 197 (434)
+|+|||+|+.|+-+|..|++. |.+|+++++.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 689999999999999999998 899999998764
No 486
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=96.02 E-value=0.0017 Score=54.74 Aligned_cols=36 Identities=31% Similarity=0.276 Sum_probs=31.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.||||||+|.+||+||+.+.++. ++.+|++||..-.
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~r-PdlkvaIIE~SVa 112 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNR-PDLKVAIIESSVA 112 (328)
T ss_pred cceEEECCCccccceeeeeeccC-CCceEEEEEeeec
Confidence 59999999999999999999764 4677999999854
No 487
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.92 E-value=0.11 Score=52.89 Aligned_cols=31 Identities=29% Similarity=0.472 Sum_probs=27.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCC---CeEEEEeeC
Q 013890 165 KAVVVGGGYIGLELSAALKINN---IDVSMVYPE 195 (434)
Q Consensus 165 ~vvVvG~g~~g~e~a~~l~~~g---~~v~~~~~~ 195 (434)
.|+|||+|..|+-+|..+++.| .+|.++++.
T Consensus 7 DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~ 40 (577)
T PRK06069 7 DVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKT 40 (577)
T ss_pred CEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcc
Confidence 6999999999999999999988 799998764
No 488
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.91 E-value=0.12 Score=53.16 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=28.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~ 195 (434)
-.|+|||+|..|+-+|..+++.|.+|.++++.
T Consensus 9 ~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~ 40 (626)
T PRK07803 9 YDVVVIGAGGAGLRAAIEARERGLRVAVVCKS 40 (626)
T ss_pred ecEEEECcCHHHHHHHHHHHHCCCCEEEEecc
Confidence 36999999999999999999999999998765
No 489
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.88 E-value=0.16 Score=51.81 Aligned_cols=54 Identities=15% Similarity=0.202 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCcEEEcCCeEEEEEecCC---CcEEEEEe---CCCc--EEEcCEEEEccCCc
Q 013890 209 AFYEGYYANKGIKIIKGTVAVGFTTNAD---GEVNEVKL---KDGR--TLEADIVVVGVGGR 262 (434)
Q Consensus 209 ~~~~~~l~~~gV~~~~~~~v~~i~~~~~---g~~~~v~~---~~g~--~i~~d~vv~a~G~~ 262 (434)
..+.+.+++.||+++.++.+.++..+++ |++.++.. .+|+ .+.++.||+|||--
T Consensus 144 ~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 205 (583)
T PRK08205 144 QTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGS 205 (583)
T ss_pred HHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCC
Confidence 3455556678999999999999875332 77777754 3554 57899999999953
No 490
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.76 E-value=0.15 Score=52.06 Aligned_cols=33 Identities=30% Similarity=0.479 Sum_probs=29.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~ 195 (434)
+..|+|||+|..|+-.|..+++.|.+|.++++.
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~ 35 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLV 35 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEcc
Confidence 447999999999999999999999999999854
No 491
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=95.66 E-value=0.11 Score=49.47 Aligned_cols=83 Identities=22% Similarity=0.281 Sum_probs=61.1
Q ss_pred HHHHHHHHHCCCeEEEEeeCCccCCc-ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-cEEEcC
Q 013890 176 LELSAALKINNIDVSMVYPEPWCMPR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG-RTLEAD 253 (434)
Q Consensus 176 ~e~a~~l~~~g~~v~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g-~~i~~d 253 (434)
-++...|.+.|.... .++..++.|. .-..++.+.+...+++.||+++++++|++|+. ++ ..+.+.++ ..+.+|
T Consensus 57 ~d~~~fF~~~Gi~~~-~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~~--~~--~~v~~~~~~~~~~a~ 131 (376)
T TIGR03862 57 VALQDWARGLGIETF-VGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQG--GT--LRFETPDGQSTIEAD 131 (376)
T ss_pred HHHHHHHHHCCCceE-ECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEeC--Cc--EEEEECCCceEEecC
Confidence 356677888887633 3455566653 23467889999999999999999999999932 33 45666443 469999
Q ss_pred EEEEccCCcc
Q 013890 254 IVVVGVGGRP 263 (434)
Q Consensus 254 ~vv~a~G~~p 263 (434)
.||+|+|-.+
T Consensus 132 ~vIlAtGG~s 141 (376)
T TIGR03862 132 AVVLALGGAS 141 (376)
T ss_pred EEEEcCCCcc
Confidence 9999999654
No 492
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=95.66 E-value=0.018 Score=53.80 Aligned_cols=101 Identities=15% Similarity=0.201 Sum_probs=67.6
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCC-CCCcEE-EEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHH
Q 013890 5 SFKYVILGGGVSAGYAAREFAKQGV-KPGELA-IISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY 82 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~-~~~~V~-vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (434)
+..|-|||+|.-|--.|+.|.++-- ...+|. ||+.... .. .-+|.+. .+...+-+
T Consensus 347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~n----m~------------kiLPeyl-------s~wt~eki 403 (659)
T KOG1346|consen 347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYN----ME------------KILPEYL-------SQWTIEKI 403 (659)
T ss_pred cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCC----hh------------hhhHHHH-------HHHHHHHH
Confidence 4679999999999999999987621 122232 3433311 00 1122111 12234556
Q ss_pred HHCCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCccc
Q 013890 83 KEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLR 128 (434)
Q Consensus 83 ~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~ 128 (434)
++.|+.++.+..|..+....+ .+.+.||.++..|.+|+|+|..|..
T Consensus 404 r~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ 451 (659)
T KOG1346|consen 404 RKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNS 451 (659)
T ss_pred HhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCch
Confidence 778999999988887765544 4667899999999999999999864
No 493
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=95.64 E-value=0.013 Score=58.02 Aligned_cols=39 Identities=18% Similarity=0.457 Sum_probs=33.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~ 44 (434)
..||.||||||.||...|..|.+. +..+|+|+|+....+
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn--~~~~VLLLEaGg~~~ 94 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSEN--PNWSVLLLEAGGDPP 94 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccC--CCceEEEEecCCCCc
Confidence 469999999999999999999985 345599999998753
No 494
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=95.62 E-value=0.013 Score=51.22 Aligned_cols=92 Identities=16% Similarity=0.268 Sum_probs=57.8
Q ss_pred cEEEECCCHHHHHHHHHHHHC--CCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcE----------EE--cCCeEEE
Q 013890 165 KAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIK----------II--KGTVAVG 230 (434)
Q Consensus 165 ~vvVvG~g~~g~e~a~~l~~~--g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~----------~~--~~~~v~~ 230 (434)
+.+|||||..|+.+|..|+.+ ..++.++..++-.-. -.--+.+.+++++..|+ +. .+. |..
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vks----vtn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~-v~~ 75 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKS----VTNYQKIGQYLEKFDVKEQNCHELGPDFRRFLND-VVT 75 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHH----HhhHHHHHHHHHhcCccccchhhhcccHHHHHHh-hhh
Confidence 368999999999999999876 456777765543221 11122333344433332 10 011 333
Q ss_pred EEecCCCcEEEEEeCCCcEEEcCEEEEccCCccCh
Q 013890 231 FTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 231 i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~ 265 (434)
+.. .--.+.+++|.++.++.+++|+|.+|-.
T Consensus 76 ~~s----~ehci~t~~g~~~ky~kKOG~tg~kPkl 106 (334)
T KOG2755|consen 76 WDS----SEHCIHTQNGEKLKYFKLCLCTGYKPKL 106 (334)
T ss_pred hcc----ccceEEecCCceeeEEEEEEecCCCcce
Confidence 322 1136888999999999999999999964
No 495
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=95.61 E-value=0.25 Score=50.08 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=29.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 013890 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 196 (434)
Q Consensus 164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~ 196 (434)
-.|+|||+|..|+-.|..+++.|.+|.++++.+
T Consensus 5 ~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 5 ADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 468999999999999999999999999987665
No 496
>PRK07395 L-aspartate oxidase; Provisional
Probab=95.60 E-value=0.093 Score=53.04 Aligned_cols=44 Identities=27% Similarity=0.479 Sum_probs=31.5
Q ss_pred cCcEEEcCCeEEEEEecC-CCcEEEEEe-CCCc--EEEcCEEEEccCC
Q 013890 218 KGIKIIKGTVAVGFTTNA-DGEVNEVKL-KDGR--TLEADIVVVGVGG 261 (434)
Q Consensus 218 ~gV~~~~~~~v~~i~~~~-~g~~~~v~~-~~g~--~i~~d~vv~a~G~ 261 (434)
.||+++.++.+.++..++ ++++.++.. .+|+ .+.++.||+|||-
T Consensus 148 ~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG 195 (553)
T PRK07395 148 PNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGG 195 (553)
T ss_pred CCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCC
Confidence 378888888888876533 367777654 3453 3789999999995
No 497
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=95.59 E-value=0.022 Score=54.99 Aligned_cols=58 Identities=21% Similarity=0.192 Sum_probs=44.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC-CccCCcccCHHHHHHHHHHHHHcCc
Q 013890 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE-PWCMPRLFTADIAAFYEGYYANKGI 220 (434)
Q Consensus 163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~gV 220 (434)
...|+|||+|+.|+-+|..|++.|.+|+++++. ..+.+......+...-.+.|++.|+
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~ 60 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGL 60 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCC
Confidence 357999999999999999999999999999997 3444332233344555677888887
No 498
>PRK08071 L-aspartate oxidase; Provisional
Probab=95.58 E-value=0.11 Score=52.13 Aligned_cols=44 Identities=25% Similarity=0.445 Sum_probs=31.3
Q ss_pred cCcEEEcCCeEEEEEecCCCcEEEEEeCC--Cc--EEEcCEEEEccCCc
Q 013890 218 KGIKIIKGTVAVGFTTNADGEVNEVKLKD--GR--TLEADIVVVGVGGR 262 (434)
Q Consensus 218 ~gV~~~~~~~v~~i~~~~~g~~~~v~~~~--g~--~i~~d~vv~a~G~~ 262 (434)
.||+++.++.+.++.. +++++.++...+ |+ .+.++.||+|+|--
T Consensus 142 ~gV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~ 189 (510)
T PRK08071 142 PHVTVVEQEMVIDLII-ENGRCIGVLTKDSEGKLKRYYADYVVLASGGC 189 (510)
T ss_pred cCCEEEECeEhhheee-cCCEEEEEEEEECCCcEEEEEcCeEEEecCCC
Confidence 4777887877777764 356666666533 33 57899999999953
No 499
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=95.53 E-value=0.16 Score=56.04 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 013890 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 196 (434)
Q Consensus 163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~ 196 (434)
...|+|||+|..|+-.|...++.|.+|.++++.+
T Consensus 409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~ 442 (1167)
T PTZ00306 409 PARVIVVGGGLAGCSAAIEAASCGAQVILLEKEA 442 (1167)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccC
Confidence 3569999999999999999999999999988763
No 500
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=95.53 E-value=0.056 Score=50.92 Aligned_cols=57 Identities=21% Similarity=0.281 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~ 262 (434)
+..+...+.+.+++.|++++.+++|+++.. .++.+..|.+.+| ++.+|.||+|+|..
T Consensus 136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~-~~~~~~~v~~~~g-~~~a~~vV~a~G~~ 192 (337)
T TIGR02352 136 PRALLKALEKALEKLGVEIIEHTEVQHIEI-RGEKVTAIVTPSG-DVQADQVVLAAGAW 192 (337)
T ss_pred hHHHHHHHHHHHHHcCCEEEccceEEEEEe-eCCEEEEEEcCCC-EEECCEEEEcCChh
Confidence 678888999999999999999999999986 3555667787777 79999999999954
Done!