Query 013893
Match_columns 434
No_of_seqs 149 out of 1484
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 08:27:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013893.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013893hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02339 thermosome_arch ther 100.0 2.6E-88 5.5E-93 704.5 49.8 416 13-434 4-426 (519)
2 TIGR02344 chap_CCT_gamma T-com 100.0 1E-87 2.2E-92 700.9 47.8 416 13-434 4-427 (525)
3 TIGR02343 chap_CCT_epsi T-comp 100.0 3.2E-87 7E-92 695.9 50.2 419 12-434 12-437 (532)
4 cd03343 cpn60 cpn60 chaperonin 100.0 5.5E-87 1.2E-91 695.1 49.5 416 13-434 3-423 (517)
5 TIGR02347 chap_CCT_zeta T-comp 100.0 1.4E-86 3.1E-91 689.7 50.8 416 13-434 4-432 (531)
6 cd03339 TCP1_epsilon TCP-1 (CT 100.0 1.1E-86 2.4E-91 692.7 49.7 418 13-434 9-433 (526)
7 cd03340 TCP1_eta TCP-1 (CTT or 100.0 2.7E-86 6E-91 689.7 50.5 416 13-434 4-425 (522)
8 TIGR02346 chap_CCT_theta T-com 100.0 3.8E-86 8.2E-91 687.8 51.3 422 11-434 3-424 (531)
9 KOG0361 Chaperonin complex com 100.0 1.6E-88 3.4E-93 635.8 29.9 420 9-434 4-429 (543)
10 cd03336 TCP1_beta TCP-1 (CTT o 100.0 5.6E-86 1.2E-90 685.6 51.2 414 14-434 2-420 (517)
11 PTZ00212 T-complex protein 1 s 100.0 5.3E-86 1.1E-90 687.6 50.7 416 12-434 9-432 (533)
12 cd03335 TCP1_alpha TCP-1 (CTT 100.0 9E-86 1.9E-90 686.1 49.7 409 20-434 3-424 (527)
13 TIGR02342 chap_CCT_delta T-com 100.0 2.6E-85 5.5E-90 680.7 50.3 406 25-434 8-423 (517)
14 cd03338 TCP1_delta TCP-1 (CTT 100.0 8E-85 1.7E-89 678.2 49.6 410 20-434 3-422 (515)
15 TIGR02345 chap_CCT_eta T-compl 100.0 9.4E-85 2E-89 677.1 49.2 416 12-434 5-426 (522)
16 TIGR02341 chap_CCT_beta T-comp 100.0 3.5E-84 7.7E-89 671.3 50.7 415 13-434 2-421 (519)
17 TIGR02340 chap_CCT_alpha T-com 100.0 7.1E-84 1.5E-88 672.6 50.5 409 20-434 7-428 (536)
18 KOG0362 Chaperonin complex com 100.0 2.1E-84 4.7E-89 626.3 41.0 427 1-434 1-427 (537)
19 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 6E-82 1.3E-86 650.0 46.1 383 16-434 3-389 (484)
20 cd03337 TCP1_gamma TCP-1 (CTT 100.0 7.1E-81 1.5E-85 641.9 43.2 375 13-434 4-386 (480)
21 cd03341 TCP1_theta TCP-1 (CTT 100.0 1.8E-80 3.9E-85 637.7 45.9 374 21-434 3-376 (472)
22 KOG0358 Chaperonin complex com 100.0 8.9E-82 1.9E-86 589.4 29.7 406 25-434 25-440 (534)
23 KOG0363 Chaperonin complex com 100.0 8.4E-80 1.8E-84 573.6 30.7 417 11-434 4-425 (527)
24 cd00309 chaperonin_type_I_II c 100.0 2.8E-77 6E-82 615.2 45.3 364 24-434 6-372 (464)
25 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 2.9E-75 6.2E-80 605.2 44.6 386 38-434 1-391 (485)
26 COG0459 GroL Chaperonin GroEL 100.0 2.4E-75 5.2E-80 597.8 40.9 405 19-433 5-419 (524)
27 KOG0360 Chaperonin complex com 100.0 2.6E-75 5.6E-80 559.7 28.0 408 19-433 13-433 (545)
28 KOG0364 Chaperonin complex com 100.0 5.3E-75 1.1E-79 552.7 23.2 416 13-434 7-427 (527)
29 PRK12849 groEL chaperonin GroE 100.0 4.7E-70 1E-74 565.6 43.7 361 25-434 9-433 (542)
30 cd03344 GroEL GroEL_like type 100.0 7.7E-70 1.7E-74 562.7 42.7 361 25-434 7-431 (520)
31 PRK00013 groEL chaperonin GroE 100.0 1.1E-69 2.5E-74 562.8 42.5 361 25-434 9-433 (542)
32 PTZ00114 Heat shock protein 60 100.0 1.9E-69 4.1E-74 563.8 42.9 362 20-430 17-443 (555)
33 PRK12851 groEL chaperonin GroE 100.0 1.6E-68 3.5E-73 554.7 42.5 359 25-431 10-432 (541)
34 TIGR02348 GroEL chaperonin Gro 100.0 1.3E-68 2.9E-73 554.5 41.6 360 25-434 8-432 (524)
35 PRK12850 groEL chaperonin GroE 100.0 4.4E-68 9.6E-73 551.7 43.0 361 25-433 10-433 (544)
36 PRK12852 groEL chaperonin GroE 100.0 2.9E-67 6.3E-72 546.8 41.7 359 25-431 10-432 (545)
37 CHL00093 groEL chaperonin GroE 100.0 2.2E-66 4.7E-71 538.5 38.9 364 25-434 9-435 (529)
38 PLN03167 Chaperonin-60 beta su 100.0 4.1E-66 8.9E-71 539.5 37.7 363 26-434 66-489 (600)
39 PRK14104 chaperonin GroEL; Pro 100.0 2.3E-65 5E-70 531.0 42.1 357 25-429 10-430 (546)
40 KOG0359 Chaperonin complex com 100.0 1.3E-66 2.8E-71 494.7 19.4 401 25-434 16-423 (520)
41 KOG0357 Chaperonin complex com 100.0 1.7E-48 3.6E-53 360.9 17.5 278 19-434 22-301 (400)
42 cd03334 Fab1_TCP TCP-1 like do 100.0 8.5E-44 1.8E-48 337.8 26.3 229 175-411 18-257 (261)
43 cd03333 chaperonin_like chaper 100.0 1.7E-38 3.7E-43 293.5 24.4 206 159-407 2-209 (209)
44 KOG0356 Mitochondrial chaperon 100.0 6.5E-38 1.4E-42 308.3 27.1 360 21-429 20-444 (550)
45 KOG0230 Phosphatidylinositol-4 99.9 1.7E-26 3.7E-31 248.4 15.9 234 175-416 332-575 (1598)
46 COG1433 Uncharacterized conser 76.6 10 0.00022 31.6 6.5 51 281-332 57-107 (121)
47 PRK13600 putative ribosomal pr 73.7 16 0.00036 28.3 6.6 50 279-328 19-72 (84)
48 cd00851 MTH1175 This uncharact 72.3 11 0.00023 29.9 5.6 38 281-319 55-92 (103)
49 PF02579 Nitro_FeMo-Co: Dinitr 70.0 15 0.00033 28.4 5.9 37 282-319 46-82 (94)
50 cd00562 NifX_NifB This CD repr 68.6 16 0.00036 28.6 6.0 37 282-319 54-90 (102)
51 TIGR03659 IsdE heme ABC transp 54.7 36 0.00078 32.6 6.6 52 282-333 84-141 (289)
52 cd01143 YvrC Periplasmic bindi 53.2 41 0.00089 29.7 6.4 52 282-333 53-111 (195)
53 PRK07283 hypothetical protein; 52.1 65 0.0014 25.6 6.6 50 280-332 25-78 (98)
54 PRK06683 hypothetical protein; 49.7 75 0.0016 24.4 6.3 51 281-334 19-73 (82)
55 PRK13602 putative ribosomal pr 49.3 80 0.0017 24.2 6.5 51 280-333 18-72 (82)
56 PRK09534 btuF corrinoid ABC tr 48.1 47 0.001 33.2 6.4 52 282-333 112-170 (359)
57 cd00852 NifB NifB belongs to a 47.4 68 0.0015 25.6 6.2 31 288-319 64-94 (106)
58 PRK13601 putative L7Ae-like ri 47.0 89 0.0019 24.0 6.3 50 281-333 16-69 (82)
59 PRK07714 hypothetical protein; 46.7 93 0.002 24.7 6.7 51 280-333 25-79 (100)
60 cd01144 BtuF Cobalamin binding 46.3 63 0.0014 29.8 6.7 52 282-333 50-108 (245)
61 PRK04175 rpl7ae 50S ribosomal 45.3 85 0.0018 26.1 6.5 51 279-332 36-91 (122)
62 cd03465 URO-D_like The URO-D _ 44.6 1.9E+02 0.0041 28.1 10.1 44 272-316 204-248 (330)
63 PF01248 Ribosomal_L7Ae: Ribos 43.9 58 0.0013 25.4 5.1 52 279-333 21-77 (95)
64 TIGR03677 rpl7ae 50S ribosomal 42.0 97 0.0021 25.5 6.3 51 279-332 32-87 (117)
65 COG1504 Uncharacterized conser 41.6 1.5E+02 0.0032 24.3 6.8 51 283-333 55-111 (121)
66 cd04743 NPD_PKS 2-Nitropropane 40.4 1.1E+02 0.0023 30.2 7.2 56 280-336 73-128 (320)
67 cd01138 FeuA Periplasmic bindi 40.0 78 0.0017 29.3 6.3 51 282-333 59-113 (248)
68 PRK01018 50S ribosomal protein 39.9 1.3E+02 0.0029 23.9 6.6 50 280-332 23-77 (99)
69 PF12846 AAA_10: AAA-like doma 39.4 84 0.0018 29.7 6.5 58 276-333 240-302 (304)
70 cd01141 TroA_d Periplasmic bin 39.3 72 0.0016 28.0 5.7 50 282-331 62-119 (186)
71 COG1358 RPL8A Ribosomal protei 39.0 1.3E+02 0.0027 24.9 6.4 50 278-327 32-86 (116)
72 PTZ00106 60S ribosomal protein 38.6 1.2E+02 0.0026 24.6 6.2 51 280-333 32-87 (108)
73 PRK03379 vitamin B12-transport 38.1 92 0.002 29.3 6.5 52 282-333 65-123 (260)
74 TIGR03151 enACPred_II putative 37.5 1.4E+02 0.003 29.1 7.7 57 280-336 78-134 (307)
75 TIGR00129 fdhD_narQ formate de 37.2 70 0.0015 30.0 5.3 41 280-320 183-223 (237)
76 COG4359 Uncharacterized conser 36.8 1.1E+02 0.0025 27.5 6.1 76 276-357 76-155 (220)
77 PF07905 PucR: Purine cataboli 36.3 1.5E+02 0.0032 24.5 6.7 45 277-321 60-109 (123)
78 TIGR02663 nifX nitrogen fixati 35.4 1.4E+02 0.0031 24.4 6.4 46 288-334 62-111 (119)
79 COG3962 Acetolactate synthase 35.2 40 0.00088 34.6 3.5 40 391-431 216-255 (617)
80 cd01149 HutB Hemin binding pro 34.8 1.2E+02 0.0027 27.7 6.6 52 282-333 51-110 (235)
81 cd00853 NifX NifX belongs to a 34.4 1.2E+02 0.0026 23.9 5.7 31 288-319 60-90 (102)
82 PRK00724 formate dehydrogenase 34.2 81 0.0018 30.0 5.3 41 280-320 212-252 (263)
83 COG1861 SpsF Spore coat polysa 33.2 1.2E+02 0.0027 28.1 6.0 54 279-332 32-89 (241)
84 COG1526 FdhD Uncharacterized p 32.3 90 0.002 29.8 5.2 41 280-320 212-252 (266)
85 cd01140 FatB Siderophore bindi 31.5 1.3E+02 0.0028 28.2 6.3 52 282-333 65-123 (270)
86 PRK05583 ribosomal protein L7A 31.2 2.2E+02 0.0048 22.9 6.6 51 280-333 24-78 (104)
87 KOG0991 Replication factor C, 30.1 2.2E+02 0.0048 26.9 7.1 86 37-136 183-283 (333)
88 cd01139 TroA_f Periplasmic bin 29.4 1.4E+02 0.0029 29.3 6.3 51 282-332 84-147 (342)
89 cd01146 FhuD Fe3+-siderophore 29.4 1.5E+02 0.0034 27.4 6.4 52 282-333 58-115 (256)
90 PF02634 FdhD-NarQ: FdhD/NarQ 27.7 85 0.0018 29.3 4.2 39 281-319 184-222 (236)
91 KOG2663 Acetolactate synthase, 27.5 67 0.0015 30.2 3.3 29 375-404 121-149 (309)
92 PF01497 Peripla_BP_2: Peripla 26.2 2.3E+02 0.005 25.6 6.9 52 282-333 53-112 (238)
93 PF03060 NMO: Nitronate monoox 26.0 2.1E+02 0.0046 28.1 6.9 55 278-333 102-158 (330)
94 PF07685 GATase_3: CobB/CobQ-l 25.9 1.5E+02 0.0032 25.7 5.2 54 373-426 7-60 (158)
95 PF13380 CoA_binding_2: CoA bi 25.0 2E+02 0.0042 23.5 5.5 38 280-317 70-108 (116)
96 cd01147 HemV-2 Metal binding p 23.9 1.9E+02 0.004 26.8 5.9 52 282-333 67-127 (262)
97 PF02603 Hpr_kinase_N: HPr Ser 23.2 84 0.0018 26.2 3.0 45 275-319 67-113 (127)
98 cd00636 TroA-like Helical back 22.2 2.4E+02 0.0051 22.6 5.7 34 282-315 54-87 (148)
99 PF12554 MOZART1: Mitotic-spin 22.2 1.2E+02 0.0027 20.8 3.0 19 110-128 23-41 (48)
100 PF04471 Mrr_cat: Restriction 21.5 1.4E+02 0.0029 23.5 3.9 28 289-316 79-107 (115)
101 PF00809 Pterin_bind: Pterin b 21.5 1.6E+02 0.0034 26.9 4.7 47 272-318 53-99 (210)
No 1
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=2.6e-88 Score=704.49 Aligned_cols=416 Identities=30% Similarity=0.568 Sum_probs=394.9
Q ss_pred ccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHHhh
Q 013893 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQ 92 (434)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~ 92 (434)
+++++.+++++ ++++..|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|
T Consensus 4 ~~~~~~~~~~~-~~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q 82 (519)
T TIGR02339 4 ILKEGTQRTKG-RDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQ 82 (519)
T ss_pred cccCCcccccH-HHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 46777778888 68999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhccc
Q 013893 93 QEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASK 172 (434)
Q Consensus 93 ~~~~GDGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk 172 (434)
++++||||||+++|+++|++++.+|+++|+||..|++||+.|++.+++.|++++++. +..+.+.|.++++|+++||
T Consensus 83 d~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v----~~~~~~~L~~ia~tsl~sk 158 (519)
T TIGR02339 83 DAEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKI----SPEDRDLLKKVAETSLTGK 158 (519)
T ss_pred HHHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccc----CcccHHHHHHHHHhhhccc
Confidence 999999999999999999999999999999999999999999999999999998873 4456789999999999999
Q ss_pred cc--CchhhHHHHHHHHHHHhCC---CCCCCccccceEEEEcCCCCcccceeeeeEEEeecC--CCCcceeecceEEEEe
Q 013893 173 QF--GQEEILCPLIADACIQVCP---KNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDA--VGSIKNMEKAKVAVFA 245 (434)
Q Consensus 173 ~~--~~~~~ls~Lv~~ai~~v~~---~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~--~~~~~~~~n~kIlll~ 245 (434)
+. .+.++|++|+++|+..+++ ++...||+++|+|++++||+++||++++|++|++++ .+|++.++||||++++
T Consensus 159 ~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~~m~~~i~n~kIlll~ 238 (519)
T TIGR02339 159 ASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDTELVEGIVVDKEPVHPGMPKRVKNAKIALLD 238 (519)
T ss_pred cccchhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcceeEeeEEEecCCCCCCCccccCCCcEEEEe
Confidence 55 5789999999999999975 222358889999999999999999999999999987 4689999999999999
Q ss_pred eeccccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHH
Q 013893 246 GGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRR 325 (434)
Q Consensus 246 ~~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ 325 (434)
++||+++++.++++.+++++++.+++++|++++++++++|++.|++||+++++|++.+++||.++||++++++++++|+|
T Consensus 239 ~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~gI~~v~~v~~~~L~r 318 (519)
T TIGR02339 239 APLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDIEK 318 (519)
T ss_pred ccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCCCEEEecCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeecccCCCCCCCCCcceeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhh
Q 013893 326 FCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMC 405 (434)
Q Consensus 326 ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~ 405 (434)
||++|||++++++++++++++|+|+.|++.++|+++|++|++|+. +..|||+|||+|+.+++|.+|+++||++++++++
T Consensus 319 Ia~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~-~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~ 397 (519)
T TIGR02339 319 LARATGAKIVSSIKEITESDLGYAGLVEERKVGDDKMTFVEGCKN-PKAVTILLRGGTEHVVDELERSIQDALHVVASAL 397 (519)
T ss_pred HHHHhCCEEeCchhhCChhhccCCceEEEEEECCeEEEEEEcCCC-CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999974 8899999999999999999999999999999999
Q ss_pred cCCeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013893 406 RDSRIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 406 ~~~~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
++|++|||||++|++|+++|++++++++|
T Consensus 398 ~~~~vvpGGGa~e~~ls~~l~~~~~~~~~ 426 (519)
T TIGR02339 398 EDGKVVAGGGAVEIELALRLRSYARKIGG 426 (519)
T ss_pred cCCCEeeCCCHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999877654
No 2
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1e-87 Score=700.91 Aligned_cols=416 Identities=26% Similarity=0.459 Sum_probs=392.8
Q ss_pred ccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHHhh
Q 013893 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQ 92 (434)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~ 92 (434)
+++++.+..++ ++++..|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+|+|+++++++|
T Consensus 4 ~~~~~~~~~~~-~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~a~~q 82 (525)
T TIGR02344 4 VLNQNTKRESG-RKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPAAKSMIELSRTQ 82 (525)
T ss_pred eccCCCccccH-HHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHhh
Confidence 35666666667 69999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhccc
Q 013893 93 QEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASK 172 (434)
Q Consensus 93 ~~~~GDGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk 172 (434)
++++||||||+++|+++||++|.+|+++|+||..|++||+.|++.++++|++++++. +..+.+.|.++++|++++|
T Consensus 83 ~~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~----~~~~~~~l~~i~~t~l~sk 158 (525)
T TIGR02344 83 DEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPV----DVNDDAAMLKLIQSCIGTK 158 (525)
T ss_pred hhhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccc----CCCCHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999999999999999998873 5567888999999999999
Q ss_pred c-cCchhhHHHHHHHHHHHhCCCC---CCCcccc-ceEEEEcCCCCcccceeeeeEEEeecCC--CCcceeecceEEEEe
Q 013893 173 Q-FGQEEILCPLIADACIQVCPKN---PANFNVD-NVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFA 245 (434)
Q Consensus 173 ~-~~~~~~ls~Lv~~ai~~v~~~~---~~~~~~~-~I~i~~i~Gg~~~dS~~i~G~v~~~~~~--~~~~~~~n~kIlll~ 245 (434)
+ ..|.++|++++++|+..+++++ ...+|++ +|+|++++||+++||++++|++|++++. +|++.++||||++++
T Consensus 159 ~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~~m~~~~~n~kIlll~ 238 (525)
T TIGR02344 159 FVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHPKMRRYIENPRIVLLD 238 (525)
T ss_pred cchhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCCCCccccCCCCEEEEe
Confidence 5 4789999999999999998753 2256665 5999999999999999999999999864 689999999999999
Q ss_pred eeccccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHH
Q 013893 246 GGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRR 325 (434)
Q Consensus 246 ~~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ 325 (434)
++|++.+++.++++.+++++++++++++|++++++++++|.+.+++||+++++|++.+++||.++||++++++++++|+|
T Consensus 239 ~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~I~av~~v~~~~Ler 318 (525)
T TIGR02344 239 CPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDNNR 318 (525)
T ss_pred cccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCceEEecCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeecccCCCCCCCCCcc-eeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHh
Q 013893 326 FCRTTGAVAMLKLCQPNPDDLGY-VDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAM 404 (434)
Q Consensus 326 ia~~tGa~ii~~~~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~ 404 (434)
||++|||++++++++++++++|+ |+.|+++++|+++|++|++|+. +++|||+|||+|+.+++|++|+++||+++++++
T Consensus 319 Ia~~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~-~~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~ 397 (525)
T TIGR02344 319 IARACGATIVNRPEELRESDVGTGCGLFEVKKIGDEYFTFFTECKD-PKACTILLRGASKDVLNEIERNLQDAMAVARNV 397 (525)
T ss_pred HHHHhCCeEecchhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCC-CCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 9999999999999999999974 889999999999999999999999999999999
Q ss_pred hcCCeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013893 405 CRDSRIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 405 ~~~~~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
++++++|||||++|++||.+|++++.+++|
T Consensus 398 ~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~ 427 (525)
T TIGR02344 398 LLEPKLLPGGGATEMAVSVYLAKKASKLEG 427 (525)
T ss_pred HhCCCcccCCCHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999877664
No 3
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.2e-87 Score=695.91 Aligned_cols=419 Identities=29% Similarity=0.457 Sum_probs=393.3
Q ss_pred ccccc--ccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHH
Q 013893 12 SMLKE--GHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAG 89 (434)
Q Consensus 12 ~~~~~--~~~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~ 89 (434)
.++++ +.++.++ ++++..|+.||.+++++++|||||+||+|||+++.|+++|||||+||+++|+++||+|+|+++++
T Consensus 12 ~~~~~~~~~~~~~~-~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~akll~~~a 90 (532)
T TIGR02343 12 IIIKDQDKKKRLKG-LEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPIAKLMVELS 90 (532)
T ss_pred hhhccccccccccH-HHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCHHHHHHHHHH
Confidence 35677 4556667 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhCCCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhh
Q 013893 90 KAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAV 169 (434)
Q Consensus 90 ~~~~~~~GDGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l 169 (434)
++|++++||||||+++|+++||++|.+|+++|+||..|++||+.|++.++++|++++++... +..+.+.|.++++|++
T Consensus 91 ~~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~--~~~~~~~l~~ia~t~l 168 (532)
T TIGR02343 91 KSQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISD--DNNNKEPLIQAAKTSL 168 (532)
T ss_pred HHHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCc--CCCCHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999987421 3446788999999999
Q ss_pred ccccc-CchhhHHHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccceeeeeEEEeecCC--CCcceeecceEEEEee
Q 013893 170 ASKQF-GQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAG 246 (434)
Q Consensus 170 ~sk~~-~~~~~ls~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~--~~~~~~~n~kIlll~~ 246 (434)
++|+. .+.++|++++++|+..+.+.+...+|+++|+|++++||+++||++++|++|++++. .||+.++||||+++++
T Consensus 169 ~sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~m~~~~~n~kI~l~~~ 248 (532)
T TIGR02343 169 GSKIVSKCHRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQMPKEVKDAKIAILTC 248 (532)
T ss_pred ccchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcccceeEeeEEEecCcCCCCCCeeecCCcEEEEEe
Confidence 99964 56899999999999998653334689999999999999999999999999999874 6899999999999999
Q ss_pred eccccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHH
Q 013893 247 GVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRF 326 (434)
Q Consensus 247 ~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~i 326 (434)
+||+++++.+.++.+++++++..+.++|++++++++++|++.|++||+++++|++.+++||.++||.+++++++++|+||
T Consensus 249 ~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i~~v~~~~~~~l~~I 328 (532)
T TIGR02343 249 PFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGGHELELI 328 (532)
T ss_pred eccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCcEEEEcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeecccCCCCCCCCCcceeeEEEEEEcc--eEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHh
Q 013893 327 CRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGG--ARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAM 404 (434)
Q Consensus 327 a~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~--~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~ 404 (434)
|++|||++++++++++++++|+|+.|++.++|+ ++|++|++|+. ++.|||+|||+|+.+++|.+|+++||+++++++
T Consensus 329 a~~tGa~~i~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~-~~~~TIllrG~t~~~l~E~er~l~DAl~~v~~~ 407 (532)
T TIGR02343 329 AIATGGRIVPRFEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKN-SKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNL 407 (532)
T ss_pred HHHhCCEEecccccCCHhHCcccceEEEEEecCCcceEEEEECCCC-CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987 48999999974 789999999999999999999999999999999
Q ss_pred hcCCeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013893 405 CRDSRIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 405 ~~~~~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
++++++|||||++|++|+++|++++.+++|
T Consensus 408 i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~ 437 (532)
T TIGR02343 408 IKNSRIVYGGGAAEISCSLAVSQEADKYSG 437 (532)
T ss_pred HhCCCEEeCcCHHHHHHHHHHHHHhccCCc
Confidence 999999999999999999999999876654
No 4
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=5.5e-87 Score=695.13 Aligned_cols=416 Identities=32% Similarity=0.593 Sum_probs=394.8
Q ss_pred ccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHHhh
Q 013893 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQ 92 (434)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~ 92 (434)
+++++.+.+++ ++++..|+.||.+++++++|||||+|++|||+++.|+++|||||+|||++|+++||+|+|+++++++|
T Consensus 3 ~~~~~~~~~~~-~~~~~~n~~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q 81 (517)
T cd03343 3 ILKEGTQRTSG-RDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQ 81 (517)
T ss_pred ccCCCcccccH-HHHHHHHHHHHHHHHHHHhCCCCCCCCCceeEcCCCCEEEEccHHHHHHHccCcCHHHHHHHHHHHHH
Confidence 45777777888 68999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhccc
Q 013893 93 QEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASK 172 (434)
Q Consensus 93 ~~~~GDGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk 172 (434)
++++||||||+++|+++|++++.+++++|+||..|++||+.|.+.+++.|++++.+. +..+.+.|.++++|++++|
T Consensus 82 ~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v----~~~~~~~l~~va~ts~~sk 157 (517)
T cd03343 82 DEEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKV----DPDDKDTLRKIAKTSLTGK 157 (517)
T ss_pred HHHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhccc----CCCCHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999999999999999998873 4457889999999999999
Q ss_pred cc-CchhhHHHHHHHHHHHhCCCCC--CCccccceEEEEcCCCCcccceeeeeEEEeecCC--CCcceeecceEEEEeee
Q 013893 173 QF-GQEEILCPLIADACIQVCPKNP--ANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGG 247 (434)
Q Consensus 173 ~~-~~~~~ls~Lv~~ai~~v~~~~~--~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~--~~~~~~~n~kIlll~~~ 247 (434)
+. .+.++|++++++|+..+++++. ..||+++|+|++++|++++||++++|++|++++. .|++.++||||++++++
T Consensus 158 ~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~m~~~~~n~~Illl~~~ 237 (517)
T cd03343 158 GAEAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGMPKRVENAKIALLDAP 237 (517)
T ss_pred chhhHHHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHHcceeeeEEEeccCCCCCCccccCCCcEEEEecc
Confidence 64 6789999999999999976432 3688899999999999999999999999999873 68999999999999999
Q ss_pred ccccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHH
Q 013893 248 VDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFC 327 (434)
Q Consensus 248 l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia 327 (434)
||+++++.++++.+++++++.++.++|++++++++++|++.|+|||+++++|++.+++||.++||++++++++++|+|||
T Consensus 238 Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI~~v~~v~~~~l~~Ia 317 (517)
T cd03343 238 LEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDMEKLA 317 (517)
T ss_pred ccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCcEEEEeCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeecccCCCCCCCCCcceeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcC
Q 013893 328 RTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRD 407 (434)
Q Consensus 328 ~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~ 407 (434)
++|||++++++++++++++|+|+.|++.++|+++|++|++|+. ++.|||+|||+|+.+++|.+|+++||++++++++++
T Consensus 318 ~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~-~~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~ 396 (517)
T cd03343 318 RATGAKIVTNIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKN-PKAVTILLRGGTEHVVDELERALEDALRVVADALED 396 (517)
T ss_pred HHhCCEEecchhhCChhhCCccceEEEEEECCeEEEEEEcCCC-CceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999974 789999999999999999999999999999999999
Q ss_pred CeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013893 408 SRIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 408 ~~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
|++|||||++|++|+++|++++++.+|
T Consensus 397 ~~vvpGGG~~e~~ls~~L~~~~~~~~~ 423 (517)
T cd03343 397 GKVVAGGGAVEIELAKRLREYARSVGG 423 (517)
T ss_pred CCeeeCCCHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999877654
No 5
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.4e-86 Score=689.67 Aligned_cols=416 Identities=24% Similarity=0.403 Sum_probs=391.8
Q ss_pred ccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHHhh
Q 013893 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQ 92 (434)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~ 92 (434)
+++++.+..++ ++++..|+.||.+++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|
T Consensus 4 ~~~~~~~~~~~-~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~a~ll~~~a~~q 82 (531)
T TIGR02347 4 LLNPKAESLRR-DAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPTASMIARAATAQ 82 (531)
T ss_pred cccCCcccccH-HHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHh
Confidence 45666666767 69999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhccc
Q 013893 93 QEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASK 172 (434)
Q Consensus 93 ~~~~GDGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk 172 (434)
++++||||||+++|+++||++|.+|+++|+||..|++||+.|++.++++|++++++.. +..+.+.|.++++|+++||
T Consensus 83 d~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~---~~~~~~~l~~ia~tsl~sK 159 (531)
T TIGR02347 83 DDITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTE---DEVDRELLLNVARTSLRTK 159 (531)
T ss_pred hhhhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCC---CCCCHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999986531 2457889999999999999
Q ss_pred cc-CchhhHHHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccceeeeeEEEeecCC--CCcceeecceEEEEeeecc
Q 013893 173 QF-GQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVD 249 (434)
Q Consensus 173 ~~-~~~~~ls~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~--~~~~~~~n~kIlll~~~l~ 249 (434)
+. +++++|++++++|+..+++++. .+|+++|++++++|++.+||++++|++|++++. .||++++||||++++++|+
T Consensus 160 ~~~~~~~~ls~iv~~Av~~v~~~~~-~i~~~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~~~~~~~n~~Ill~~~~le 238 (531)
T TIGR02347 160 LPIDLADQLTEIVVDAVLAIKKDGE-QIDLFMVEIMEMKHKSATDTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSLE 238 (531)
T ss_pred cchhhHHHHHHHHHHHHHHHhhcCC-CCChhHeEEEEecCCCccccEEEeeEEEecCcCCCCCceeccCceEEEEeCCCC
Confidence 64 6799999999999999987532 588889999999999999999999999998874 5899999999999999999
Q ss_pred ccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcC-------Ce---EEEeCCCcCHHHHHHHHHCCeEEEEeCC
Q 013893 250 TSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESG-------AE---VIVSGAAVGEMALHFCERYKLMVLKISS 319 (434)
Q Consensus 250 ~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~-------~~---lvl~~~~I~~~al~~l~~~~I~~v~~v~ 319 (434)
+.+++.+.++.+++++++..+++.|++++++++++|.+.+ ++ ||+++++|++.+++||.++||+++++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~i~rv~ 318 (531)
T TIGR02347 239 YEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEGIMALRRAK 318 (531)
T ss_pred CCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCCceEEccCC
Confidence 9999999999999999999999999999999999999866 25 9999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCeecccCCCCCCCCCcceeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHH
Q 013893 320 KFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVN 399 (434)
Q Consensus 320 ~~~L~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~ 399 (434)
+++|+|||++|||++++++++++++++|+|+.|+++.+|+++|++|++|+. ++.|||+|||+|+.+++|.+|+++||++
T Consensus 319 ~~~le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~-~~~~TI~lrG~t~~~l~E~er~l~DAl~ 397 (531)
T TIGR02347 319 RRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETSIGEEKYTFIEEVKN-PKSCTILIKGPNDHTIKQIKDAVRDGLR 397 (531)
T ss_pred HHHHHHHHHHhCCEEecccccCCccccccceEEEEEEECCeEEEEEEcCCC-CCeEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999974 8899999999999999999999999999
Q ss_pred HHHHhhcCCeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013893 400 TYKAMCRDSRIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 400 ~~~~~~~~~~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
++++++++|++|||||++|++|+.+|++++.+++|
T Consensus 398 v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~ 432 (531)
T TIGR02347 398 AVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKG 432 (531)
T ss_pred HHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999877664
No 6
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.1e-86 Score=692.72 Aligned_cols=418 Identities=27% Similarity=0.439 Sum_probs=391.7
Q ss_pred cccccc--ccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHH
Q 013893 13 MLKEGH--KHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGK 90 (434)
Q Consensus 13 ~~~~~~--~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~ 90 (434)
+++++. +...+ ++++..|+.||.+++++++|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++++
T Consensus 9 ~~~~~~~~~~~~~-~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~akll~~~a~ 87 (526)
T cd03339 9 IVREQEKKKRLKG-LEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQIAKLLVELSK 87 (526)
T ss_pred EecCCCccccccH-HHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHHHHHHHHHHH
Confidence 467763 45556 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhCCCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhc
Q 013893 91 AQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVA 170 (434)
Q Consensus 91 ~~~~~~GDGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~ 170 (434)
+|++++||||||+++|+++||++|.+|+++|+||..|++||+.|++.+++.|++++++.. .+..+.+.|.++++|+++
T Consensus 88 ~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~--~~~~~~~~l~~ia~tsl~ 165 (526)
T cd03339 88 SQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIE--FSPDNKEPLIQTAMTSLG 165 (526)
T ss_pred hhhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccC--CCcccHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999988742 133468889999999999
Q ss_pred cccc-CchhhHHHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccceeeeeEEEeecCC--CCcceeecceEEEEeee
Q 013893 171 SKQF-GQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGG 247 (434)
Q Consensus 171 sk~~-~~~~~ls~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~--~~~~~~~n~kIlll~~~ 247 (434)
+|+. .+.++|++++++|+..+.+.+...+|++.|+|++++||+++||++++|++|++++. .|++.++||||++++++
T Consensus 166 sk~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~m~~~~~n~kI~ll~~~ 245 (526)
T cd03339 166 SKIVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQMPKEVKDAKIAILTCP 245 (526)
T ss_pred ccchhhHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHHHcceeeeEEEecccCCCCCCceecCCCEEEEEec
Confidence 9964 56899999999999998653334678889999999999999999999999999875 68999999999999999
Q ss_pred ccccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHH
Q 013893 248 VDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFC 327 (434)
Q Consensus 248 l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia 327 (434)
||+++.+.+.++.++++++++.+.++|++++++++++|.+.|++||+++++|++.+++||.++||++++++++++|+|||
T Consensus 246 le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~~~~LerIa 325 (526)
T cd03339 246 FEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVEIELIA 325 (526)
T ss_pred ccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCEEEEeCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeecccCCCCCCCCCcceeeEEEEEEcc--eEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhh
Q 013893 328 RTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGG--ARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMC 405 (434)
Q Consensus 328 ~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~--~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~ 405 (434)
++|||++++++++++++++|+|+.|++..+|+ ++|++|++|+. ++.|||+|||+|+.+++|.+|+++||++++++++
T Consensus 326 ~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~-~~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~~ 404 (526)
T cd03339 326 IATGGRIVPRFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPN-SKAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLI 404 (526)
T ss_pred HHhCCEEecchhhCChhhcccCceEEEEEecCCCcEEEEEECCCC-CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999985 68899999974 8899999999999999999999999999999999
Q ss_pred cCCeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013893 406 RDSRIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 406 ~~~~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
++|++|||||++|++|+++|++++.+.+|
T Consensus 405 ~~~~vvpGGGa~e~~ls~~l~~~~~~~~~ 433 (526)
T cd03339 405 RDNRIVYGGGAAEISCSLAVEKAADKCSG 433 (526)
T ss_pred hCCCEEeCCCHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999876654
No 7
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.7e-86 Score=689.69 Aligned_cols=416 Identities=27% Similarity=0.482 Sum_probs=391.0
Q ss_pred ccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHHhh
Q 013893 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQ 92 (434)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~ 92 (434)
+++++.+..++ .+++..|+.||.+++++++|||||+||+|||+++.|+++|||||+|||++|+++||+|+|+++++++|
T Consensus 4 ~~~~~~~~~~~-~~~~~~ni~a~~~i~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q 82 (522)
T cd03340 4 LLKEGTDTSQG-KGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPAAKTLVDIAKSQ 82 (522)
T ss_pred cccCCcccccH-HHHHHHHHHHHHHHHHHHhcCCCCCcCceEEEcCCCCEEEeccHHHHHHHccccCHHHHHHHHHHHHh
Confidence 56788787778 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhccc
Q 013893 93 QEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASK 172 (434)
Q Consensus 93 ~~~~GDGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk 172 (434)
++++||||||+++|+++||+++.+++++|+||..|++||+.|++.+++.|++++++.....+..+++.|.++++|+++||
T Consensus 83 ~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK 162 (522)
T cd03340 83 DAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSK 162 (522)
T ss_pred HhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999887421001123677999999999999
Q ss_pred cc-CchhhHHHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccceeeeeEEEeecCC-----CCcceeecceEEEEee
Q 013893 173 QF-GQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV-----GSIKNMEKAKVAVFAG 246 (434)
Q Consensus 173 ~~-~~~~~ls~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~-----~~~~~~~n~kIlll~~ 246 (434)
+. .+.++|++++++|+..+++ ++|+++|+|++++|++++||++++|++|++++. +||+.++||||+++++
T Consensus 163 ~~~~~~~~l~~l~~~A~~~v~~----~~~~~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n~kIll~~~ 238 (522)
T cd03340 163 LIASEKEFFAKMVVDAVLSLDD----DLDLDMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLNV 238 (522)
T ss_pred cchhHHHHHHHHHHHHHHHhcc----cCChhHheEeeecCCChhhceeeeeEEEecccCccccccCCccccCCeEEEEeC
Confidence 65 6789999999999999965 367889999999999999999999999999863 4689999999999999
Q ss_pred eccccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHH
Q 013893 247 GVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRF 326 (434)
Q Consensus 247 ~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~i 326 (434)
+||+.+++.+.++.++++++++.+.+.|++++.++++++.+.|++||+++++|+|.+++||.++||++++++++++|+||
T Consensus 239 ~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~I~~~~~v~~~~l~rI 318 (522)
T cd03340 239 ELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLKRV 318 (522)
T ss_pred CCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeecccCCCCCCCCCcceeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhc
Q 013893 327 CRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCR 406 (434)
Q Consensus 327 a~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~ 406 (434)
|++|||++++++++++++++|+|+.|++.++|+++|++|++|+. ++.|||+|||+++.+++|.+|+++||+++++++++
T Consensus 319 a~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~-~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~ 397 (522)
T cd03340 319 AQATGGSIQTTVSNITDDVLGTCGLFEERQVGGERYNIFTGCPK-AKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIK 397 (522)
T ss_pred HHHHCCEEeeccccCCccccccceEEEEEEECCEEEEEEECCCC-CceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999984 89999999999999999999999999999999999
Q ss_pred CCeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013893 407 DSRIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 407 ~~~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
+|++|||||++|++|+++|++++++.+|
T Consensus 398 ~~~vvpGGG~~E~~ls~~l~~~~~~~~~ 425 (522)
T cd03340 398 NDSVVAGGGAIEMELSKYLRDYSRTIAG 425 (522)
T ss_pred CCCEEECcCHHHHHHHHHHHHHhccCCC
Confidence 9999999999999999999999876654
No 8
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.8e-86 Score=687.75 Aligned_cols=422 Identities=63% Similarity=1.010 Sum_probs=397.0
Q ss_pred ccccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHH
Q 013893 11 QSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGK 90 (434)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~ 90 (434)
+.+++++.++.++.++++..|+.||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~e~a~ 82 (531)
T TIGR02346 3 NSLLKEGYRHMSGLEEAVIKNIEACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPAAKLLVMASE 82 (531)
T ss_pred cccccCCcccccchHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCHHHHHHHHHHH
Confidence 45667776677775679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhCCCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhc
Q 013893 91 AQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVA 170 (434)
Q Consensus 91 ~~~~~~GDGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~ 170 (434)
+|++++||||||+++|+++||+++++++++|+||..|++||+.|++.+++.|+++++..+. +..+.+.|.++++|+++
T Consensus 83 sqd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~--~~~~~~~l~~i~~tsl~ 160 (531)
T TIGR02346 83 MQENEIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVE--DVRNKKELIKALKASIS 160 (531)
T ss_pred HHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCC--CCCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999998863232 44568889999999999
Q ss_pred ccccCchhhHHHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccceeeeeEEEeecCCCCcceeecceEEEEeeeccc
Q 013893 171 SKQFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDT 250 (434)
Q Consensus 171 sk~~~~~~~ls~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~~~~~~~~n~kIlll~~~l~~ 250 (434)
||+.+.+++|++++++|+..+++++.+.+|++.|+|++++|++.++|++++|++|++++.+||+.++||||+++++|+++
T Consensus 161 sK~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~ds~li~Gi~~~~~~~~~~k~i~n~kI~l~~~~l~~ 240 (531)
T TIGR02346 161 SKQYGNEDFLAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSISNSEVLKGMVFNREAEGSVKRVKNAKVAVFSCPLDT 240 (531)
T ss_pred cccCchHHHHHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCChhhceeEeeeEEeccCCCCceeccCCCEEEEecCcCC
Confidence 99765599999999999999987654468899999999999999999999999999998888999999999999999999
Q ss_pred cccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHh
Q 013893 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTT 330 (434)
Q Consensus 251 ~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia~~t 330 (434)
.+++.+.++.++++.++..+.+.|+++++++++++.+.|++||+++++|+|.+++||.++||+++++++..+|+|||.+|
T Consensus 241 ~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~I~av~~~~~~~l~~Ia~~t 320 (531)
T TIGR02346 241 ATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYNIMVLKIPSKFELRRLCKTV 320 (531)
T ss_pred CcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCCcEEEecCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeecccCCCCCCCCCcceeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcCCeE
Q 013893 331 GAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRI 410 (434)
Q Consensus 331 Ga~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~~~v 410 (434)
||++++++++++++++|+|+.|++.++|+++|.+|++++..++.+||+|||+|+.+++|.+|+++||++++++++++|++
T Consensus 321 Ga~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~v 400 (531)
T TIGR02346 321 GATPLARLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENGDSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDNRF 400 (531)
T ss_pred CCEEecccccCCHhHccccceEEEEEECCEEEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999999999999999999988744789999999999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHhhhcCCC
Q 013893 411 VPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 411 vpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
|||||++|++||.+|++++++++|
T Consensus 401 VpGGG~~e~~ls~~L~~~~~~~~~ 424 (531)
T TIGR02346 401 LPGAGATEIELALRLKKYANKLPG 424 (531)
T ss_pred EECcCHHHHHHHHHHHHHhccCCC
Confidence 999999999999999999876654
No 9
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-88 Score=635.78 Aligned_cols=420 Identities=25% Similarity=0.432 Sum_probs=397.7
Q ss_pred ccccccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHH
Q 013893 9 GIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLA 88 (434)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~ 88 (434)
+...++|+|++..+| +.++.+||.||..+++.++|||||+|+||+|+++.|+++|||||+||||.|++-||+|+.|++.
T Consensus 4 ~~ii~lkegtd~sqG-k~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPaaktlVdi 82 (543)
T KOG0361|consen 4 PPIILLKEGTDPSQG-KGQLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPAAKTLVDI 82 (543)
T ss_pred CCEEEeecccCcccC-chhhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChhHHHHHHH
Confidence 456788999999999 6999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhCCCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHh
Q 013893 89 GKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAA 168 (434)
Q Consensus 89 ~~~~~~~~GDGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~ 168 (434)
+++||.++||||||||+||+++|+++-.+++.|+||..|+++|+.|...|++.++++++.........-++.|++++.|+
T Consensus 83 a~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T~ 162 (543)
T KOG0361|consen 83 ARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAATA 162 (543)
T ss_pred HhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988732100111266789999999
Q ss_pred hccc-ccCchhhHHHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccceeeeeEEEeecC-----CCCcceeecceEE
Q 013893 169 VASK-QFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDA-----VGSIKNMEKAKVA 242 (434)
Q Consensus 169 l~sk-~~~~~~~ls~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~-----~~~~~~~~n~kIl 242 (434)
++|| +..+.++|++++++|+..+.. ..+++.|-|+|++||.+.||.+++|+.|++.| +..|+.+.||||+
T Consensus 163 lsSKlI~~ek~fF~~MvVDAV~~ld~----~l~~~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~NpkIl 238 (543)
T KOG0361|consen 163 LSSKLIRQEKEFFAKMVVDAVLTLDN----DLDLNMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFLNPKIL 238 (543)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHhhcc----ccchhhcceeecCCCccchhhhccceeeeehccccchhhCccccCCceEE
Confidence 9999 567899999999999998852 46778999999999999999999999999976 4679999999999
Q ss_pred EEeeeccccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHH
Q 013893 243 VFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFE 322 (434)
Q Consensus 243 ll~~~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~ 322 (434)
++|..||....+.++++++.+++++..+.+.||+.+.+++++|...|+|||++.-.|.|.|.+||+.++|.+..||+.+|
T Consensus 239 ~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdiFCAGRV~~eD 318 (543)
T KOG0361|consen 239 LLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDIFCAGRVPEED 318 (543)
T ss_pred EEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCceecCcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCeecccCCCCCCCCCcceeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHH
Q 013893 323 LRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYK 402 (434)
Q Consensus 323 L~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~ 402 (434)
|.|+..++|+++.++..++.+..+|.|..|+++++|+++|.+|+||+. .+.||++|||+.++.++|.+|++|||++++|
T Consensus 319 l~Rv~~acGGsi~tt~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~-aktcTliLRGgaeqfieE~eRSlHDAImIVr 397 (543)
T KOG0361|consen 319 LNRVMQACGGSIQTTVSDIKEEVLGTCALFEERQVGGERYNLFEGCPK-AKTCTLILRGGAEQFIEETERSLHDAIMIVR 397 (543)
T ss_pred HHHHHHhcCcchhhhhhhcchhhcchhhhHHHHhhcchhhhhhcCCCc-cceeEEEEeccHHHHHHHHhhhhhhHHHHHH
Confidence 999999999999999999999999999999999999999999999985 8999999999999999999999999999999
Q ss_pred HhhcCCeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013893 403 AMCRDSRIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 403 ~~~~~~~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
.++++..||+|||++||+|+++||+++++++|
T Consensus 398 ralkn~~vVaGGGaiEMElSk~lRd~S~ti~g 429 (543)
T KOG0361|consen 398 RALKNDSVVAGGGAIEMELSKYLRDYSRTIAG 429 (543)
T ss_pred HHhccCcEeeCCceeeehHHHHHHHhhcccCc
Confidence 99999999999999999999999999999886
No 10
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5.6e-86 Score=685.57 Aligned_cols=414 Identities=26% Similarity=0.414 Sum_probs=388.1
Q ss_pred cccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcC--CCCEEEecCHHHHHhhccccChHHHHHHHHHHh
Q 013893 14 LKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINH--LDKLFVTNDAATIVNELEVQHPAAKLLVLAGKA 91 (434)
Q Consensus 14 ~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~--~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~ 91 (434)
++++.+..++ ++++..|+.||.+++++++|||||+||+|||+++ .|+++|||||+||+++|+++||+|+|+++++++
T Consensus 2 ~~~~~~~~~~-~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~ 80 (517)
T cd03336 2 LKDGAQEEKG-ETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPAAKVLVDISKV 80 (517)
T ss_pred CCCccccccH-HHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHH
Confidence 3555566667 6999999999999999999999999999999998 499999999999999999999999999999999
Q ss_pred hhhhhCCCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhcc
Q 013893 92 QQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVAS 171 (434)
Q Consensus 92 ~~~~~GDGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~s 171 (434)
|++++||||||+++|+++||++|.+|+++|+||..|++||+.|.+.++++|++++++... .+..+.+.|.++++|+++|
T Consensus 81 qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~-~~~~~~~~l~~ia~t~lss 159 (517)
T cd03336 81 QDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSS-DEEAFREDLLNIARTTLSS 159 (517)
T ss_pred HHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCccc-ccchhHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999999999999999999887411 0112367899999999999
Q ss_pred ccc-CchhhHHHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccceeeeeEEEeecC-CCCcceeecceEEEEeeecc
Q 013893 172 KQF-GQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDA-VGSIKNMEKAKVAVFAGGVD 249 (434)
Q Consensus 172 k~~-~~~~~ls~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~-~~~~~~~~n~kIlll~~~l~ 249 (434)
|+. .+.++|++|+++|+..+.+ .+|+++|++++++|++++||++++|+++++.+ ..||+.++||||++++++|+
T Consensus 160 k~~~~~~~~l~~l~~~A~~~v~~----~~~~~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~~~~~~~~n~kIli~~~~le 235 (517)
T cd03336 160 KILTQDKEHFAELAVDAVLRLKG----SGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGVNQPKRIENAKILIANTPMD 235 (517)
T ss_pred cccchhHHHHHHHHHHHHHHhhc----cCCccceeEEEccCCCccceEEEeeEEEecccCCCCCCeeccccEEEEecCCC
Confidence 964 6789999999999999953 47888999999999999999999999999886 46799999999999999999
Q ss_pred cccccc-ceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHH
Q 013893 250 TSATET-KGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCR 328 (434)
Q Consensus 250 ~~~~~~-~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia~ 328 (434)
+++++. ++++.+++++++..+.+.|+++++++++.|.+.|++++++++.|++.+++||.++||++++++++++|+|||+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~I~av~~v~~~~L~rIa~ 315 (517)
T cd03336 236 TDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIMAIEHADFDGVERLAL 315 (517)
T ss_pred cccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHH
Confidence 999987 7899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeecccCCCCCCCCCcceeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcCC
Q 013893 329 TTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDS 408 (434)
Q Consensus 329 ~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~~ 408 (434)
+|||++++++++++++++|+|+.|++..+|+++|++|++|+. +++|||+|||+|+.+++|.+|+++||++++++++++|
T Consensus 316 ~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~-~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~ 394 (517)
T cd03336 316 VTGGEIASTFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAA-GEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDT 394 (517)
T ss_pred HhCCEEecccCCCCcccccccceEEEEEECCeEEEEEEccCC-CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999984 8999999999999999999999999999999999999
Q ss_pred eEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013893 409 RIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 409 ~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
++|||||++|++|+++|++++++++|
T Consensus 395 ~vvpGGGa~e~~ls~~l~~~~~~~~~ 420 (517)
T cd03336 395 RVVLGGGCSEMLMAKAVEELAKKTPG 420 (517)
T ss_pred CEEeCCCHHHHHHHHHHHHHhhhCCC
Confidence 99999999999999999999887654
No 11
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=5.3e-86 Score=687.58 Aligned_cols=416 Identities=26% Similarity=0.425 Sum_probs=391.0
Q ss_pred cccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcC-----CCCEEEecCHHHHHhhccccChHHHHHH
Q 013893 12 SMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINH-----LDKLFVTNDAATIVNELEVQHPAAKLLV 86 (434)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~-----~g~~~iTndg~tIl~~l~~~hP~a~ll~ 86 (434)
.+++++.+.+++ ++++..|+.||..++++++|||||+||+|||+++ .|+++|||||+|||++|+++||+|+|++
T Consensus 9 ~~~~~~~~~~~~-~~a~~~ni~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~akll~ 87 (533)
T PTZ00212 9 QVLKQGAQEEKG-ETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPAAKILV 87 (533)
T ss_pred HHhcCCcccccH-HHHHHHHHHHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcCHHHHHHH
Confidence 467888888888 7999999999999999999999999999999998 5999999999999999999999999999
Q ss_pred HHHHhhhhhhCCCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHH
Q 013893 87 LAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMK 166 (434)
Q Consensus 87 ~~~~~~~~~~GDGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~ 166 (434)
+++++|++++||||||+++|+++||++|.+|+++|+||..|++||+.|++.++++|++++++... .+..+.+.|.++++
T Consensus 88 ~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~-~~~~~~~~l~~va~ 166 (533)
T PTZ00212 88 DISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGS-DEEKFKEDLLNIAR 166 (533)
T ss_pred HHHHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCc-cchhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999887421 01112678999999
Q ss_pred Hhhccccc-CchhhHHHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccceeeeeEEEeecCC-CCcceeecceEEEE
Q 013893 167 AAVASKQF-GQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV-GSIKNMEKAKVAVF 244 (434)
Q Consensus 167 t~l~sk~~-~~~~~ls~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~-~~~~~~~n~kIlll 244 (434)
|+++||+. .+.++|++++++|+..+.+ .+++++|++++++||+++||++++|+++++.+. .||+.++||||+++
T Consensus 167 t~l~sk~~~~~~~~l~~i~~~av~~i~~----~~~~~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~~~~~~i~n~kIll~ 242 (533)
T PTZ00212 167 TTLSSKLLTVEKDHFAKLAVDAVLRLKG----SGNLDYIQIIKKPGGTLRDSYLEDGFILEKKIGVGQPKRLENCKILVA 242 (533)
T ss_pred HHhcccccchhHHHHHHHHHHHHHHHhc----cCCccceEEEEecCcCccccEEEEeEEEecccCCCCCccccCCcEEEE
Confidence 99999964 5789999999999999864 378889999999999999999999999998764 58999999999999
Q ss_pred eeecccccccc-ceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHH
Q 013893 245 AGGVDTSATET-KGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFEL 323 (434)
Q Consensus 245 ~~~l~~~~~~~-~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L 323 (434)
+++||+++++. ++++.+++++++..+.++|+++++++++.|.+.++++++++++|++.+++||.++||+++++++++++
T Consensus 243 ~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~I~avr~v~~~~l 322 (533)
T PTZ00212 243 NTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAGIMAIEHADFDGM 322 (533)
T ss_pred eCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCCEEEecCCHHHH
Confidence 99999999987 78899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCeecccCCCCCCCCCcceeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHH
Q 013893 324 RRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKA 403 (434)
Q Consensus 324 ~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~ 403 (434)
+|||++|||++++++++++++++|+|+.|++..+|+++|++|++|+. +++|||+|||+|+.+++|.+|+++||++++++
T Consensus 323 ~rIa~~tGa~iis~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~-~~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~ 401 (533)
T PTZ00212 323 ERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAK-GEACTIVLRGASTHILDEAERSLHDALCVLSQ 401 (533)
T ss_pred HHHHHHhCCEEeecCCCCCHHHccCCceEEEEEECCeEEEEEEccCC-CCEEEEEEECCChhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999974 89999999999999999999999999999999
Q ss_pred hhcCCeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013893 404 MCRDSRIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 404 ~~~~~~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
++++|++|||||++|++|+++|++++++.+|
T Consensus 402 ~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~ 432 (533)
T PTZ00212 402 TVKDTRVVLGGGCSEMLMANAVEELAKKVEG 432 (533)
T ss_pred HhhCCCEeeCCCHHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999999999877654
No 12
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=9e-86 Score=686.06 Aligned_cols=409 Identities=28% Similarity=0.486 Sum_probs=383.5
Q ss_pred cccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHHhhhhhhCCC
Q 013893 20 HMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDG 99 (434)
Q Consensus 20 ~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 99 (434)
+.++ +++++.|+.||.+++++++|||||+||+|||+++.|+++|||||+||+++|+++||+|+|+++++++|++++|||
T Consensus 3 ~~~~-~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~q~~~~GDG 81 (527)
T cd03335 3 RTSG-QDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDKEVGDG 81 (527)
T ss_pred cccH-HHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccChHHHHHHHHHHHHHHHhCCC
Confidence 3445 689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHh-hhhcccCCCCCCCHHHHHHHHHHhhccccc-Cch
Q 013893 100 ANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEE-LVEEGSENMDVRNTEEVIYRMKAAVASKQF-GQE 177 (434)
Q Consensus 100 tts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~-~~~ 177 (434)
|||+++|+++||++|.+|+++|+||..|++||+.|++.+++.|++ ++++. +..+++.|.++++|+++||+. .+.
T Consensus 82 TTt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~----~~~~~~~l~~ia~tsl~sK~~~~~~ 157 (527)
T cd03335 82 TTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISV----DNLGKESLINVAKTSMSSKIIGADS 157 (527)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCC----CccCHHHHHHHHHHHhcccccchhH
Confidence 999999999999999999999999999999999999999999996 77763 444788999999999999965 557
Q ss_pred hhHHHHHHHHHHHhCC--C-CCCCccccceEEEEcCCCCcccceeeeeEEEeecCC--CCcceeecceEEEEeeeccccc
Q 013893 178 EILCPLIADACIQVCP--K-NPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTSA 252 (434)
Q Consensus 178 ~~ls~Lv~~ai~~v~~--~-~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~--~~~~~~~n~kIlll~~~l~~~~ 252 (434)
++|++++++|+..++. . +...+|+++|+|++++|+++++|++++|++|++++. +||+.++||||++++++|++.+
T Consensus 158 ~~ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s~li~Givi~~~~~~~~m~~~i~n~kIlll~~~Le~~~ 237 (527)
T cd03335 158 DFFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKESYLVNGYALNCTRASQGMPTRVKNAKIACLDFNLQKTK 237 (527)
T ss_pred HHHHHHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhcceeeeEEEecccCCCCCcccccCCcEEEEeccCCCCc
Confidence 9999999999999953 1 222588899999999999999999999999998874 6899999999999999999999
Q ss_pred cccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCC
Q 013893 253 TETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGA 332 (434)
Q Consensus 253 ~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia~~tGa 332 (434)
++.++++.++++++++.+.++|++++++++++|.+.|++||+++++|++.+++||.++||++++++++++|+|||++|||
T Consensus 238 ~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~lerIa~~tGa 317 (527)
T cd03335 238 MKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKATGA 317 (527)
T ss_pred cccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCCCCC------CCCCcceeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhc
Q 013893 333 VAMLKLCQPN------PDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCR 406 (434)
Q Consensus 333 ~ii~~~~~l~------~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~ 406 (434)
++++++++++ +.++|+|+.|+++++|+++|++|++|+. +++|||+|||+|+.+++|.+|+++||+++++++++
T Consensus 318 ~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~-~~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~~ 396 (527)
T cd03335 318 TLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKK-RSSASIILRGANDFMLDEMERSLHDALCVVKRTLE 396 (527)
T ss_pred EEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCC-CCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999986653 3479999999999999999999999974 89999999999999999999999999999999999
Q ss_pred CCeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013893 407 DSRIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 407 ~~~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
+|++|||||++|++|+.+|++++++++|
T Consensus 397 ~~~vvpGGGa~e~~ls~~L~~~~~~~~~ 424 (527)
T cd03335 397 SNSVVPGGGAVETALSIYLENFATTLGS 424 (527)
T ss_pred CCCEeeCCCHHHHHHHHHHHHHHhccCc
Confidence 9999999999999999999999877654
No 13
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.6e-85 Score=680.65 Aligned_cols=406 Identities=29% Similarity=0.513 Sum_probs=386.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHHhhhhhhCCCchHHH
Q 013893 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTI 104 (434)
Q Consensus 25 ~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtts~v 104 (434)
.+++..|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++||||||++
T Consensus 8 ~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDGTtt~v 87 (517)
T TIGR02342 8 TDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHPAAKMLVELSKAQDIEAGDGTTSVV 87 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccChHHHHHHHHHHHHHHHhCCCcchHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhcccc-cCchhhHHHH
Q 013893 105 SFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQ-FGQEEILCPL 183 (434)
Q Consensus 105 lLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~-~~~~~~ls~L 183 (434)
+|+++||++|.+|+++|+||..|++||+.|++.++++|+++++|. +..+++.|.++++|++++|+ +.+.++|+++
T Consensus 88 iLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~----~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l 163 (517)
T TIGR02342 88 ILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPV----DLSDREILIKSATTSLSSKVVSQYSSLLAPL 163 (517)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccc----CccCHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 999999999999999999999999999999999999999998873 44578899999999999995 5789999999
Q ss_pred HHHHHHHhCCC-CCCCccccceEEEEcCCCCcccceeeeeEEEeecCC---CCcceeecceEEEEeeeccccccccceEE
Q 013893 184 IADACIQVCPK-NPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV---GSIKNMEKAKVAVFAGGVDTSATETKGTV 259 (434)
Q Consensus 184 v~~ai~~v~~~-~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~---~~~~~~~n~kIlll~~~l~~~~~~~~~~v 259 (434)
+++|+..++++ ....+|+++|+|.+++||+.++|++++|++|++++. +||+.++||||++++++|++.+++.+.++
T Consensus 164 ~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~~mpk~i~n~kI~ll~~~Le~~~~~~~~~~ 243 (517)
T TIGR02342 164 AVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDTELIEGLVFTQKASRSAGGPTRIEKAKIGLIQFQISPPKTDMENQV 243 (517)
T ss_pred HHHHHHHHhccccCCccCHHHeeEEeccCCChhhcEEEeeEEEeccccccCCCCccccCCcEEEEecCCCCCcccccceE
Confidence 99999999763 223688999999999999999999999999999874 68999999999999999999999999999
Q ss_pred EecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCc-----CHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCee
Q 013893 260 LIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAV-----GEMALHFCERYKLMVLKISSKFELRRFCRTTGAVA 334 (434)
Q Consensus 260 ~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I-----~~~al~~l~~~~I~~v~~v~~~~L~~ia~~tGa~i 334 (434)
.++++++++.++++|++++++++++|.+.|++||+|+++| ++.+++||.++||++++++++++|+|||++|||++
T Consensus 244 ~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I~av~~v~~~~LerIa~~tGa~i 323 (517)
T TIGR02342 244 IVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEVEFICKTIGCKP 323 (517)
T ss_pred EeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCCceEEecCCHHHHHHHHHHHCCEE
Confidence 9999999999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCcceeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcCCeEEeCC
Q 013893 335 MLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGA 414 (434)
Q Consensus 335 i~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGg 414 (434)
+++++++++.++|+|+.|++.++|+.+|+++.+|+.+++.+||+|||+|+.+++|.+|+++||+++++++++++++||||
T Consensus 324 i~~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~~~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~VpGG 403 (517)
T TIGR02342 324 IASIDHFTADKLGSAELVEEVTTDGGKIIKITGIQNAGKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGLIPGG 403 (517)
T ss_pred EcchhhcCcccCcCCceEEEEEECCeEEEEEEccCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECc
Confidence 99999999999999999999999999999999997535899999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhhcCCC
Q 013893 415 AATEIELARRLKEFSFKETG 434 (434)
Q Consensus 415 G~~E~~l~~~L~~~a~~~~g 434 (434)
|++|++|+++|++++++.+|
T Consensus 404 Ga~e~~ls~~l~~~~~~~~~ 423 (517)
T TIGR02342 404 GAPEIEIAIKLSKLARTMKG 423 (517)
T ss_pred CHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999877664
No 14
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=8e-85 Score=678.15 Aligned_cols=410 Identities=29% Similarity=0.508 Sum_probs=387.4
Q ss_pred cccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHHhhhhhhCCC
Q 013893 20 HMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDG 99 (434)
Q Consensus 20 ~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 99 (434)
+..+ .++++.|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++|||
T Consensus 3 ~~~~-~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp~a~ll~~~a~~q~~~~GDG 81 (515)
T cd03338 3 KEKP-ADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPAAKMLVELSKAQDIEAGDG 81 (515)
T ss_pred cccH-HHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeeCCCCCEEEECcHHHHHHhCcCcCHHHHHHHHHHHHHHhHhcCC
Confidence 4445 578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhcccc-cCchh
Q 013893 100 ANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQ-FGQEE 178 (434)
Q Consensus 100 tts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~-~~~~~ 178 (434)
|||+++|+++|++++.+++++|+||..|++||+.|.+.++++|++++.+. +..+.+.|.++++|++++|+ +.+++
T Consensus 82 Ttt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v----~~~~~~~l~~va~ts~~sK~~~~~~~ 157 (515)
T cd03338 82 TTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPV----DLNDRESLIKSATTSLNSKVVSQYSS 157 (515)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCC----CCCCHHHHHHHHHHHhccccchhhHH
Confidence 99999999999999999999999999999999999999999999998873 44578899999999999995 46789
Q ss_pred hHHHHHHHHHHHhCCCCC-CCccccceEEEEcCCCCcccceeeeeEEEeecCCC---CcceeecceEEEEeeeccccccc
Q 013893 179 ILCPLIADACIQVCPKNP-ANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVG---SIKNMEKAKVAVFAGGVDTSATE 254 (434)
Q Consensus 179 ~ls~Lv~~ai~~v~~~~~-~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~~---~~~~~~n~kIlll~~~l~~~~~~ 254 (434)
+|++++++|+.++++++. ..+|+++|+|.+++|++++||++++|++|++++.+ ||+.++|||+++++|+|++.+++
T Consensus 158 ~ls~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~~p~~i~n~ki~ll~~~le~~~~~ 237 (515)
T cd03338 158 LLAPIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDTELVDGLVFTQKASKKAGGPTRIEKAKIGLIQFCLSPPKTD 237 (515)
T ss_pred HHHHHHHHHHHHhhcccccCcCCHHHeEEEEecCCChhhceeeeeEEEeccccCcCCCCccccCCcEEEEeccccccccc
Confidence 999999999999987542 47899999999999999999999999999999853 48999999999999999999999
Q ss_pred cceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCc-----CHHHHHHHHHCCeEEEEeCCHHHHHHHHHH
Q 013893 255 TKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAV-----GEMALHFCERYKLMVLKISSKFELRRFCRT 329 (434)
Q Consensus 255 ~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I-----~~~al~~l~~~~I~~v~~v~~~~L~~ia~~ 329 (434)
.+.++.++++++++.+.++|++++++++++|++.|++||+++++| ++.+++||.++||++++++++++|+|||++
T Consensus 238 ~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~~~~LerIa~~ 317 (515)
T cd03338 238 MDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEIEFICKT 317 (515)
T ss_pred cCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCCceEEecCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 899999999999999999999999999999
Q ss_pred hCCeecccCCCCCCCCCcceeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcCCe
Q 013893 330 TGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSR 409 (434)
Q Consensus 330 tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~~~ 409 (434)
|||++++++++++++++|+|+.|++.++|+++|++|++|+.++++|||+|||+|+.+++|.+|+++||++++++++++|+
T Consensus 318 tGa~ii~sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~ 397 (515)
T cd03338 318 IGCKPVASIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKNPGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRA 397 (515)
T ss_pred HCCEEecccccCCHhhCCCCceEEEEEECCeEEEEEEecCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999974358999999999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHhhhcCCC
Q 013893 410 IVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 410 vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
+|||||++|++|+++|++++.+.+|
T Consensus 398 vvpGGG~~e~~ls~~l~~~~~~~~~ 422 (515)
T cd03338 398 LIPGGGAPEIEIALQLSEWARTLTG 422 (515)
T ss_pred EEECCCHHHHHHHHHHHHHhccCCc
Confidence 9999999999999999999876553
No 15
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=9.4e-85 Score=677.14 Aligned_cols=416 Identities=28% Similarity=0.454 Sum_probs=391.7
Q ss_pred cccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHHh
Q 013893 12 SMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKA 91 (434)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~ 91 (434)
.+++++.+..++ .+++..|+.||.+++++++|||||+||+|||+++.| ++|||||+|||++|+++||+|+|+++++++
T Consensus 5 ~~~~~~~~~~~~-~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP~a~ll~~~a~~ 82 (522)
T TIGR02345 5 VLLKEGTDTSQG-KGQLISNINACVAIAEILKTTLGPRGMDKLIVGKNG-ATVSNDGATILKLLDIVHPAAKTLVDIAKS 82 (522)
T ss_pred chhcCCcccccH-HHHHHHHHHHHHHHHHHHhCCCCCCCCceEEECCCC-cEEeCcHHHHHHHhcccChHHHHHHHHHHH
Confidence 456888888888 599999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred hhhhhCCCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhcc
Q 013893 92 QQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVAS 171 (434)
Q Consensus 92 ~~~~~GDGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~s 171 (434)
|++++||||||+++|+++||++|.+++++|+||..|++||+.|++.++++|+++++|.-. .+..+.+.|.++++|+++|
T Consensus 83 q~~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~-~~~~~~~~l~~va~tsl~s 161 (522)
T TIGR02345 83 QDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDE-VKGEQREVLEKCAATALNS 161 (522)
T ss_pred HHHHhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCC-cccccHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999887421 1123567899999999999
Q ss_pred ccc-CchhhHHHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccceeeeeEEEeecC-----CCCcceeecceEEEEe
Q 013893 172 KQF-GQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDA-----VGSIKNMEKAKVAVFA 245 (434)
Q Consensus 172 k~~-~~~~~ls~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~-----~~~~~~~~n~kIlll~ 245 (434)
|+. .++++|++++++|+..++++ .+|+++|+|++++||+++||++++|++|++++ .+||+.++||||++++
T Consensus 162 K~~~~~~~~l~~l~~~A~~~v~~~---~~~~~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~kIll~~ 238 (522)
T TIGR02345 162 KLIAHEKEFFSKMIVDAVLQLDID---DLDLKLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQPKKFANPKILLLN 238 (522)
T ss_pred ccccchHHHHHHHHHHHHHHHhhc---cCChhHheEEeecCCCHHhcceecceEEecccCccccccCCceeccceEEEEe
Confidence 964 67899999999999999753 58889999999999999999999999999985 3568999999999999
Q ss_pred eeccccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHH
Q 013893 246 GGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRR 325 (434)
Q Consensus 246 ~~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ 325 (434)
++|++.+.+.+..+.++++++++.+.+.|+++++++++++.+.|++||+++++|++.+++||.++||+++++++.++++|
T Consensus 239 ~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I~~~~~v~~~dl~r 318 (522)
T TIGR02345 239 VELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHNIFCAGRVSDEDLKR 318 (522)
T ss_pred cCcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHH
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeecccCCCCCCCCCcceeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhh
Q 013893 326 FCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMC 405 (434)
Q Consensus 326 ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~ 405 (434)
||++|||++++++++++++++|+|+.|+++++++++|++|++|+. +++|||+|||+|+.+++|.+|+++||++++++++
T Consensus 319 ia~~tga~ii~~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~-~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~ 397 (522)
T TIGR02345 319 VVKACGGSIQSTTSDLEADVLGTCALFEERQIGSERYNYFTGCPH-AKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAL 397 (522)
T ss_pred HHHHhCCeEEcchhhCChhhccCCceEEEEEECCeEEEEEEcCCC-CceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999974 8899999999999999999999999999999999
Q ss_pred cCCeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013893 406 RDSRIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 406 ~~~~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
+++++|||||++|++|+++|++++++.+|
T Consensus 398 ~~~~vvpGGG~~e~~ls~~l~~~~~~~~~ 426 (522)
T TIGR02345 398 KARKIVAGGGAIEMELSKILREHSKKIDG 426 (522)
T ss_pred cCCCEEeCCCHHHHHHHHHHHHHHhhCCC
Confidence 99899999999999999999999876654
No 16
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.5e-84 Score=671.28 Aligned_cols=415 Identities=24% Similarity=0.398 Sum_probs=387.8
Q ss_pred ccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCC--CCEEEecCHHHHHhhccccChHHHHHHHHHH
Q 013893 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHL--DKLFVTNDAATIVNELEVQHPAAKLLVLAGK 90 (434)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~--g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~ 90 (434)
+++++.+..++ ++++..|+.||.+++++++|||||+||+|||+++. |+++|||||+|||++|+++||+|+|++++++
T Consensus 2 ~~~~~~~~~~~-~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP~akll~~~a~ 80 (519)
T TIGR02341 2 IFKDNAQEERG-ENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDNPAAKVLVDMSK 80 (519)
T ss_pred CccCCCccccH-HHHHHHHHHHHHHHHHHHhcCCCCCcCceEEeccCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHH
Confidence 45666677777 69999999999999999999999999999999986 9999999999999999999999999999999
Q ss_pred hhhhhhCCCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhc
Q 013893 91 AQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVA 170 (434)
Q Consensus 91 ~~~~~~GDGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~ 170 (434)
+|++++||||||+++|+++||++|.+|+++|+||..|++||+.|++.++++|++++++... .+..+.+.|.++++|+++
T Consensus 81 ~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~-~~~~~~~~L~~ia~t~l~ 159 (519)
T TIGR02341 81 VQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGS-DKTKFRDDLLNIARTTLS 159 (519)
T ss_pred HhHhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccC-cccccHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999887421 011146789999999999
Q ss_pred cccc-CchhhHHHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccceeeeeEEEeecCC-CCcceeecceEEEEeeec
Q 013893 171 SKQF-GQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV-GSIKNMEKAKVAVFAGGV 248 (434)
Q Consensus 171 sk~~-~~~~~ls~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~-~~~~~~~n~kIlll~~~l 248 (434)
+|+. .+.+.|++++++|+..+.+ ..|+++|++.+++|+++++|++++|+++++.+. +||+.++||||++++++|
T Consensus 160 ski~~~~~~~~s~l~~~av~~i~~----~~~~~~i~i~k~~G~s~~~s~l~~G~v~~~~~~~~~~~~~~n~~Ili~~~~L 235 (519)
T TIGR02341 160 SKILSQHKDHFAQLAVDAVLRLKG----SGNLDAIQIIKKLGGSLNDSYLDEGFLLEKKIGVNQPKRIENAKILIANTPM 235 (519)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhcc----CCChhheEEEEccCCCcccceEEeeEEEeccCCCCCceeeccccEEEEecCC
Confidence 9965 5789999999999999853 246678999999999999999999999999875 589999999999999999
Q ss_pred ccccccc-ceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHH
Q 013893 249 DTSATET-KGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFC 327 (434)
Q Consensus 249 ~~~~~~~-~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia 327 (434)
++.+++. ++++.+++++++..+.+.|+++++++++.|.+.|++++++++.|++.+++||.++||++++++++.+|+|||
T Consensus 236 e~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~I~~v~~~~~~~l~~ia 315 (519)
T TIGR02341 236 DTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAGVMAIEHADFEGIERLA 315 (519)
T ss_pred CCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCCcEEEecCCHHHHHHHH
Confidence 9999886 788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeecccCCCCCCCCCcceeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcC
Q 013893 328 RTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRD 407 (434)
Q Consensus 328 ~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~ 407 (434)
++|||++++++++++++++|+|+.|++..+|+++|++|.+|+. ++.|||+|||+|+.+++|.+|+++||++++++++++
T Consensus 316 ~~tGa~ii~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~-~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~ 394 (519)
T TIGR02341 316 LVTGGEIVSTFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKL-GEACTIVLRGATQQILDESERSLHDALCVLSQTVKE 394 (519)
T ss_pred HHhCCEEecccccCCccccccCceEEEEEECCEEEEEEEcCCC-CCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999984 899999999999999999999999999999999999
Q ss_pred CeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013893 408 SRIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 408 ~~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
+++||||||+|++|+++|++++++.+|
T Consensus 395 ~~vvpGGGa~e~~ls~~l~~~~~~~~~ 421 (519)
T TIGR02341 395 SRTVLGGGCSEMLMSKAVAVEAQKVPG 421 (519)
T ss_pred CCEEeCCCHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999877654
No 17
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7.1e-84 Score=672.57 Aligned_cols=409 Identities=28% Similarity=0.475 Sum_probs=382.5
Q ss_pred cccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHHhhhhhhCCC
Q 013893 20 HMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDG 99 (434)
Q Consensus 20 ~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 99 (434)
+.++ +++++.|+.||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+|+|+++++++|++++|||
T Consensus 7 ~~~~-~~~~~~ni~~~~~l~~~vkttlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDG 85 (536)
T TIGR02340 7 RTSG-QDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDREVGDG 85 (536)
T ss_pred eecH-HHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeccHHHHHHHhcccChHHHHHHHHHHHHHHHhCCC
Confidence 4455 699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhh-hhcccCCCCCCCHHHHHHHHHHhhccccc-Cch
Q 013893 100 ANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEEL-VEEGSENMDVRNTEEVIYRMKAAVASKQF-GQE 177 (434)
Q Consensus 100 tts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~i~~t~l~sk~~-~~~ 177 (434)
|||+++|+++||++|.+++++|+||..|++||+.|++.+++.|++. ++|. +..+.+.|.++++|+++||+. .++
T Consensus 86 TTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~----~~~~~~~l~~va~tsl~sK~~~~~~ 161 (536)
T TIGR02340 86 TTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSV----DELGREALINVAKTSMSSKIIGLDS 161 (536)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCC----CcccHHHHHHHHHHHhccccchhhH
Confidence 9999999999999999999999999999999999999999999975 6653 444688899999999999964 568
Q ss_pred hhHHHHHHHHHHHhCC---CCCCCccccceEEEEcCCCCcccceeeeeEEEeecCC--CCcceeecceEEEEeeeccccc
Q 013893 178 EILCPLIADACIQVCP---KNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTSA 252 (434)
Q Consensus 178 ~~ls~Lv~~ai~~v~~---~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~--~~~~~~~n~kIlll~~~l~~~~ 252 (434)
++|++++++|+..++. ++...+|+++|++++++||+.++|++++|++|++++. +|++.++||||++++++|++.+
T Consensus 162 ~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~~m~~~~~n~kIli~~~~L~~~~ 241 (536)
T TIGR02340 162 DFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARESYLVKGYALNCTRASQQMPKRIKKAKIACLDFNLQKQK 241 (536)
T ss_pred HHHHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCccccEEEEEEEEecccCCCCCcceecCCcEEEEecCCCCCc
Confidence 9999999999999963 1223578899999999999999999999999998874 7999999999999999999999
Q ss_pred cccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCC
Q 013893 253 TETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGA 332 (434)
Q Consensus 253 ~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia~~tGa 332 (434)
++.++++.++++.+++.+.+.|+++++++++.|.+.+++||+++++|++.+++||.++||++++++++++|+|||++|||
T Consensus 242 ~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~I~~i~rv~~~~LerIa~~tGa 321 (536)
T TIGR02340 242 MALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKATGG 321 (536)
T ss_pred ccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCCCC------CCCCCcceeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhc
Q 013893 333 VAMLKLCQP------NPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCR 406 (434)
Q Consensus 333 ~ii~~~~~l------~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~ 406 (434)
++++++.++ ++.++|+|+.|+++++|+++|++|++++ ++++|||+|||+|+.+++|.+|+++||+++++++++
T Consensus 322 ~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~-~~~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~~ 400 (536)
T TIGR02340 322 TLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTK-GRKSASIILRGANDFMLDEMERSLHDALCVVKRTLE 400 (536)
T ss_pred EEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCC-CCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999998655 3455999999999999999999999997 478999999999999999999999999999999999
Q ss_pred CCeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013893 407 DSRIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 407 ~~~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
+|++|||||++|++|+++|++++++++|
T Consensus 401 ~~~vVpGGGa~e~~ls~~l~~~~~~~~~ 428 (536)
T TIGR02340 401 SNSVVPGGGAVETALSIYLENFATTLGS 428 (536)
T ss_pred CCCEEECCCHHHHHHHHHHHHHhhhCCC
Confidence 9999999999999999999998776553
No 18
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-84 Score=626.34 Aligned_cols=427 Identities=55% Similarity=0.872 Sum_probs=412.0
Q ss_pred CCCCCCCcccccccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccCh
Q 013893 1 MGFSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP 80 (434)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP 80 (434)
|++..|+.+..+++++|++++++.+++...|+.||+++++++||+|||+||+||++|+.|++++|||.+||+++|+++||
T Consensus 1 M~~~vp~a~~~q~~k~g~r~~~~~e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HP 80 (537)
T KOG0362|consen 1 MALTVPKAGIPQMLKEGARSPSGEEEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHP 80 (537)
T ss_pred CCccCCCCchhhHHhccccCcccchHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhCCCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHH
Q 013893 81 AAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEE 160 (434)
Q Consensus 81 ~a~ll~~~~~~~~~~~GDGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 160 (434)
+||+|++++++|+++.||||+++|+|+++||++|++||..|++|..|++||+.|.+.+++.|+++.+..+. |..|.+
T Consensus 81 aakllv~a~~~q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~--d~~d~~- 157 (537)
T KOG0362|consen 81 AAKLLVEATQMQEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIG--DLEDKE- 157 (537)
T ss_pred HHHHHHHHHHHHHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcc--cccChH-
Confidence 99999999999999999999999999999999999999999999999999999999999999999876543 545554
Q ss_pred HHHHHHHhhcccccCchhhHHHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccceeeeeEEEeecCCCCcceeecce
Q 013893 161 VIYRMKAAVASKQFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAK 240 (434)
Q Consensus 161 l~~i~~t~l~sk~~~~~~~ls~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~~~~~~~~n~k 240 (434)
+.+++++.+|.++..+++++++++|++.+.|.. .|+.++|+++|+.|+++.+|+++.||+|++.+.+.+++.+++|
T Consensus 158 --~~~rs~i~skq~~~ed~l~~lVa~ac~si~p~~--~FnvdnIrVcKi~Gg~l~~S~Vv~GmVfkr~~eG~v~~ak~ar 233 (537)
T KOG0362|consen 158 --WALRSVIMSKQYGNEDFLTKLVAKACVSILPLM--SFNVDNIRVCKILGGGLEDSCVVCGMVFKRDPEGEVKSAKDAR 233 (537)
T ss_pred --HHHHHHHHHhhcchHHHHHHHHHHHHHhhcccc--cccccceEEEEEecCCcccceeeEEEEeccccCCcccccccce
Confidence 889999999988889999999999999999873 4999999999999999999999999999999998888899999
Q ss_pred EEEEeeeccccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCH
Q 013893 241 VAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSK 320 (434)
Q Consensus 241 Illl~~~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~ 320 (434)
|++++||++...+++++|+.+++++++..|.+.|+..++..++.|...|++||++.+.|++.+++||++++|++++..++
T Consensus 234 vAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~ImVlqi~Sk 313 (537)
T KOG0362|consen 234 VAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQINSK 313 (537)
T ss_pred eEEEecCCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhccccEEEEEeccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCeecccCCCCCCCCCcceeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHH
Q 013893 321 FELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNT 400 (434)
Q Consensus 321 ~~L~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~ 400 (434)
.||+|||+..||++++++..+.+..+|+|++|...++|+.++++|++....++..|++|||++...+|+.||+++|++++
T Consensus 314 ~eLrrlcrtvGA~~l~rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERAVddgV~t 393 (537)
T KOG0362|consen 314 FDLRRLCRTVGATALPRLFPPAPEELGYCDSVSTQEIGDTLVVVFRWESTGTRVATVVLRGATQSILDDAERAVDDGVNT 393 (537)
T ss_pred hhHHHHHHHcCCccchhccCCCCccccccceeeeeecCCceEEEEeeccCCCceeEEEEcccchhhHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999998764578999999999999999999999999999
Q ss_pred HHHhhcCCeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013893 401 YKAMCRDSRIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 401 ~~~~~~~~~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
.+...++++++||+|++|++|+..|.+++.++||
T Consensus 394 yK~l~~d~rLlpGagatEieLak~i~~~g~~~~G 427 (537)
T KOG0362|consen 394 YKALCSDSRLLPGAGATEIELAKQISSRGATLPG 427 (537)
T ss_pred hhhhccCCccccCCchhHHHHHHHHHHhcccCCC
Confidence 9999999999999999999999999999999987
No 19
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6e-82 Score=649.96 Aligned_cols=383 Identities=24% Similarity=0.425 Sum_probs=359.1
Q ss_pred cccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHHhhhhh
Q 013893 16 EGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEE 95 (434)
Q Consensus 16 ~~~~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~ 95 (434)
++.+..++ ++++..|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|+++
T Consensus 3 ~~~~~~~~-~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~a~l~~~~a~~qd~~ 81 (484)
T cd03342 3 PKAEVLRR-GQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIARAATAQDDI 81 (484)
T ss_pred CCcccccH-HHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHHhhhH
Confidence 44456666 69999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCC-CCHHHHHHHHHHhhcccc-
Q 013893 96 IGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDV-RNTEEVIYRMKAAVASKQ- 173 (434)
Q Consensus 96 ~GDGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~-~~~~~l~~i~~t~l~sk~- 173 (434)
+||||||+++|+++|++++.+++++|+||..|++||+.|.+.++++|++++.+. +. .+.+.+.+++++++++|+
T Consensus 82 ~GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v----~~~~~~~~l~~va~ts~~sk~~ 157 (484)
T cd03342 82 TGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPV----EIDTDRELLLSVARTSLRTKLH 157 (484)
T ss_pred hCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccC----CCCCCHHHHHHHHHHHhCcccc
Confidence 999999999999999999999999999999999999999999999999998763 22 478899999999999995
Q ss_pred cCchhhHHHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccceeeeeEEEeecCC--CCcceeecceEEEEeeecccc
Q 013893 174 FGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTS 251 (434)
Q Consensus 174 ~~~~~~ls~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~--~~~~~~~n~kIlll~~~l~~~ 251 (434)
..++++|++++++|+..+++++ ..||+++|++++++||+++||++++|++|++++. .||+.++||||++++++|++.
T Consensus 158 ~~~~~~l~~l~~~A~~~v~~~~-~~~~~~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m~~~~~n~~Ill~~~~le~~ 236 (484)
T cd03342 158 ADLADQLTEIVVDAVLAIYKPD-EPIDLHMVEIMQMQHKSDSDTKLIRGLVLDHGARHPDMPKRVENAYILTCNVSLEYE 236 (484)
T ss_pred hhHHHHHHHHHHHHHHHHhhcC-CccChhHeEEEEecCCChhhceEEeeEEEecCCCCCCCCccccCceEEEEeCCCCCC
Confidence 5778999999999999998754 3689999999999999999999999999998874 589999999999999999999
Q ss_pred ccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhC
Q 013893 252 ATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTG 331 (434)
Q Consensus 252 ~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia~~tG 331 (434)
+++.+.++.++ ||+++++|++.+++||.++||++++++++++|+|||++||
T Consensus 237 ~~~~~~~~~~~-----------------------------lvi~~~~I~~~al~~l~~~~I~av~~~~~~~l~~ia~~tG 287 (484)
T cd03342 237 KTEVNSGFFYS-----------------------------VVINQKGIDPPSLDMLAKEGILALRRAKRRNMERLTLACG 287 (484)
T ss_pred ccccCcEEEEE-----------------------------EEEeCCCccHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhC
Confidence 88777665542 9999999999999999999999999999999999999999
Q ss_pred CeecccCCCCCCCCCcceeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcCCeEE
Q 013893 332 AVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIV 411 (434)
Q Consensus 332 a~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~~~vv 411 (434)
|++++++++++++++|+|+.|+++.+|+++|++|++|+. ++.|||+|||+|+.+++|.+|+++||++++++++++|++|
T Consensus 288 a~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~-~~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~v 366 (484)
T cd03342 288 GVAMNSVDDLSPECLGYAGLVYERTLGEEKYTFIEGVKN-PKSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVV 366 (484)
T ss_pred CEEecccccCChhhCcccceEEEEEECCeEEEEEECCCC-CcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 999999999999999999999999999999999999974 8999999999999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHhhhcCCC
Q 013893 412 PGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 412 pGgG~~E~~l~~~L~~~a~~~~g 434 (434)
|||||+|++|+.+|++++++++|
T Consensus 367 pGGGa~e~~ls~~L~~~~~~~~~ 389 (484)
T cd03342 367 PGAGAFEVALYAHLKEFKKSVKG 389 (484)
T ss_pred eCCCHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999877654
No 20
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.1e-81 Score=641.90 Aligned_cols=375 Identities=28% Similarity=0.506 Sum_probs=350.4
Q ss_pred ccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHHhh
Q 013893 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQ 92 (434)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~ 92 (434)
+++++.+..++ ++++..|+.||.+++++++|||||+|++|||+++.|+++|||||+|||++|+++||+|+|+++++++|
T Consensus 4 ~~~~~~~~~~~-~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q 82 (480)
T cd03337 4 VLNQNTKRESG-RKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQ 82 (480)
T ss_pred eccCCCccccH-HHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHhH
Confidence 45666666767 69999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhccc
Q 013893 93 QEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASK 172 (434)
Q Consensus 93 ~~~~GDGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk 172 (434)
++++||||||+++|+++||++|.+|+++|+||..|++||+.|++.++++|++++++. +..+.+.|.++++|++++|
T Consensus 83 ~~~~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~----~~~~~~~l~~i~~t~l~sK 158 (480)
T cd03337 83 DEEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPV----DVNDRAQMLKIIKSCIGTK 158 (480)
T ss_pred HHHhCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccc----ccCCHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999998763 5567889999999999999
Q ss_pred c-cCchhhHHHHHHHHHHHhCCCC-CC--Ccccc-ceEEEEcCCCCcccceeeeeEEEeecCC--CCcceeecceEEEEe
Q 013893 173 Q-FGQEEILCPLIADACIQVCPKN-PA--NFNVD-NVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFA 245 (434)
Q Consensus 173 ~-~~~~~~ls~Lv~~ai~~v~~~~-~~--~~~~~-~I~i~~i~Gg~~~dS~~i~G~v~~~~~~--~~~~~~~n~kIlll~ 245 (434)
+ ..|.+.|++++++|+..++++. .. .+|++ +|+|++++||+.+||++++|++|++++. +|+++++||||++++
T Consensus 159 ~~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~~m~~~~~n~kIlll~ 238 (480)
T cd03337 159 FVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPKMRRRIENPRIVLLD 238 (480)
T ss_pred cchhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCCCCCcEecCCCEEEEe
Confidence 5 4789999999999999998752 22 46665 6999999999999999999999999874 689999999999999
Q ss_pred eeccccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHH
Q 013893 246 GGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRR 325 (434)
Q Consensus 246 ~~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ 325 (434)
++|++ ||+++++|++.+++||.++||++++++++++|+|
T Consensus 239 ~~Le~-----------------------------------------lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~L~r 277 (480)
T cd03337 239 CPLEY-----------------------------------------LVITEKGVSDLAQHYLVKAGITALRRVRKTDNNR 277 (480)
T ss_pred cCcce-----------------------------------------EEEeCCCccHHHHHHHHHCCcEEEEeCCHHHHHH
Confidence 99875 9999999999999999999999999999999999
Q ss_pred HHHHhCCeecccCCCCCCCCCcc-eeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHh
Q 013893 326 FCRTTGAVAMLKLCQPNPDDLGY-VDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAM 404 (434)
Q Consensus 326 ia~~tGa~ii~~~~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~ 404 (434)
||++|||++++++++++++++|+ |+.++++++++++|++|++|+. +++|||+|||+|+.+++|.+|+++||+++++++
T Consensus 278 Ia~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~-~~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~ 356 (480)
T cd03337 278 IARACGATIVNRPEELTESDVGTGAGLFEVKKIGDEYFTFITECKD-PKACTILLRGASKDVLNEVERNLQDAMAVARNI 356 (480)
T ss_pred HHHHHCCEEecchhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCC-CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 6788888888899999999974 899999999999999999999999999999999
Q ss_pred hcCCeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013893 405 CRDSRIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 405 ~~~~~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
++++++|||||++||+|+++|++++.+++|
T Consensus 357 ~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~ 386 (480)
T cd03337 357 ILNPKLVPGGGATEMAVSHALSEKAKSIEG 386 (480)
T ss_pred hcCCCEEeCCCHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999999877664
No 21
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.8e-80 Score=637.70 Aligned_cols=374 Identities=61% Similarity=1.003 Sum_probs=351.8
Q ss_pred ccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHHhhhhhhCCCc
Q 013893 21 MSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGA 100 (434)
Q Consensus 21 ~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGt 100 (434)
+.+.++++..|+.+|.++++++++||||+|++|||+++.|+++|||||+|||++|+++||+++|+++++++|++++||||
T Consensus 3 ~~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~~~~~~GDGT 82 (472)
T cd03341 3 YSGLEEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPAAKLLVMASQMQEEEIGDGT 82 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCCh
Confidence 34557999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhcccccCchhhH
Q 013893 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (434)
Q Consensus 101 ts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (434)
||+++|+++||+++.+++++|+||..|++||+.|++.++++|++++++.+. +..+.+.+.++++|+++||..++.++|
T Consensus 83 Tt~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~--~~~~~~~l~~i~~t~l~sk~~~~~~~l 160 (472)
T cd03341 83 NLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIE--DLRNKEEVSKALKTAIASKQYGNEDFL 160 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccC--CccCHHHHHHHHHHHhcccccchHHHH
Confidence 999999999999999999999999999999999999999999999876332 445678899999999999977788999
Q ss_pred HHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccceeeeeEEEeecCCCCcceeecceEEEEeeeccccccccceEEE
Q 013893 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTVL 260 (434)
Q Consensus 181 s~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~~~~~~~~n~kIlll~~~l~~~~~~~~~~v~ 260 (434)
++++++|+..+++++...||+++|+|++++|++.+||++++|++|++.+.++++.++||||++++++|++
T Consensus 161 ~~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds~lv~Giv~~~~~~~~~~~~~n~~Ili~~~~Le~---------- 230 (472)
T cd03341 161 SPLVAEACISVLPENIGNFNVDNIRVVKILGGSLEDSKVVRGMVFKREPEGSVKRVKKAKVAVFSCPFDI---------- 230 (472)
T ss_pred HHHHHHHHHHHhhccCCcCChhHeEEEEecCCCcccceEEeeEEEccccCCCceeccCCcEEEEeccccC----------
Confidence 9999999999987643478999999999999999999999999999888778899999999999999875
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCeecccCCC
Q 013893 261 IHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQ 340 (434)
Q Consensus 261 i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~~~~ 340 (434)
|++||+++++|++.+++||+++||++++++++++|+|||++|||++++++++
T Consensus 231 ----------------------------g~~lvi~~~~I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~ii~~~~~ 282 (472)
T cd03341 231 ----------------------------GVNVIVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPLPRLGA 282 (472)
T ss_pred ----------------------------CCeEEEECCCCCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEeccccc
Confidence 8999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcCCeEEeCCCHHHHH
Q 013893 341 PNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIE 420 (434)
Q Consensus 341 l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGgG~~E~~ 420 (434)
++++++|+|+.|++.++|+++|++|++|+..++.|||+|||+|+.+++|.||+++||++++++++++|++|||||++|++
T Consensus 283 l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ 362 (472)
T cd03341 283 PTPEEIGYCDSVYVEEIGDTKVVVFRQNKEDSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIE 362 (472)
T ss_pred CCHhHCCCceEEEEEEECCeeEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHH
Confidence 99999999999999999999999999996327899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCC
Q 013893 421 LARRLKEFSFKETG 434 (434)
Q Consensus 421 l~~~L~~~a~~~~g 434 (434)
|+++|++++++.+|
T Consensus 363 ls~~l~~~~~~~~~ 376 (472)
T cd03341 363 LAKKLKEYGEKTPG 376 (472)
T ss_pred HHHHHHHHhhccCC
Confidence 99999999776543
No 22
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-82 Score=589.38 Aligned_cols=406 Identities=28% Similarity=0.528 Sum_probs=386.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHHhhhhhhCCCchHHH
Q 013893 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTI 104 (434)
Q Consensus 25 ~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtts~v 104 (434)
+++|.+||+|++++++.++|||||+||||||+++.|+++|||||+|||+.|++-||+|+||++.+.+||.+.||||||+|
T Consensus 25 ~~vR~sni~Aa~avadairTSLGPkGmDKMIq~~~gev~iTNDGaTILk~m~vlhP~akmLvelS~aQD~eaGDGTTsVV 104 (534)
T KOG0358|consen 25 EQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMNVLHPAAKMLVELSAAQDSEAGDGTTSVV 104 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCccchhhHhhcCCCcEEEecChHHHHHHHhhhChHHHHHHHhhhhccccccCCceEEE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhccc-ccCchhhHHHH
Q 013893 105 SFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASK-QFGQEEILCPL 183 (434)
Q Consensus 105 lLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk-~~~~~~~ls~L 183 (434)
+|||+||+.+..|+++|+||+.|.+.|+.|.+.++++|++++.|. +.+|++.|.+-+.|+++|| .+.++..++++
T Consensus 105 ilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~v----elsdre~Li~~atTsLnSKvvSq~s~llapm 180 (534)
T KOG0358|consen 105 ILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPV----ELSDRESLIKSATTSLNSKVVSQYSSLLAPM 180 (534)
T ss_pred EehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCc----ccCcHHHHHHHHHhHhhHHHHHhhccccchH
Confidence 999999999999999999999999999999999999999999883 6789999999999999999 57888899999
Q ss_pred HHHHHHHhC-CCCCCCccccceEEEEcCCCCcccceeeeeEEEeecCC--CCcceeecceEEEEeeeccccccccceEEE
Q 013893 184 IADACIQVC-PKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTSATETKGTVL 260 (434)
Q Consensus 184 v~~ai~~v~-~~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~--~~~~~~~n~kIlll~~~l~~~~~~~~~~v~ 260 (434)
.++|+.++. |.+..+.|+.+|+|.|..||.++|+++++|++|++... .-|++++++||-++.|.+.++++++..++.
T Consensus 181 AVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDte~i~glvl~~~~~~~~gptriekAkIglIQF~iS~PKtdmen~ii 260 (534)
T KOG0358|consen 181 AVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDTELIKGLVLTQKASKSAGPTRIEKAKIGLIQFQISPPKTDMENQII 260 (534)
T ss_pred HHHHHHhccCcccccccchhhhhhHHhhCCccchhhhhcceEEeeecccCCCcchhhhceeeEEEEEecCCCCCcccceE
Confidence 999999985 45566789999999999999999999999999998763 368999999999999999999999999999
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCc-----CHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCeec
Q 013893 261 IHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAV-----GEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAM 335 (434)
Q Consensus 261 i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I-----~~~al~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii 335 (434)
++++.+++.++++|++|+.+++++|++.|+||+++|++| +|.++|||.+-+|++++.+.++|++.+|+..|+.|+
T Consensus 261 v~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klkimvikdieRediefick~l~c~Pi 340 (534)
T KOG0358|consen 261 VNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIMVIKDIEREDIEFICKTLGCKPI 340 (534)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCcEEEEccccHhhHHHHHhhcCCeec
Confidence 999999999999999999999999999999999999986 889999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCcceeeEEEEEE-cceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcCCeEEeCC
Q 013893 336 LKLCQPNPDDLGYVDSVSVEEI-GGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGA 414 (434)
Q Consensus 336 ~~~~~l~~~~lG~~~~v~~~~i-g~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGg 414 (434)
.+++.++++.+|+++.+++... |+.+++.+.|+.+.++++||++||++.-.++|.+|++|||||++|++.+.+.++|||
T Consensus 341 a~id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GG 420 (534)
T KOG0358|consen 341 ADIDHFTADKLGSADLVEETDSSGEGKIVKITGIQNAGRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGG 420 (534)
T ss_pred chhhhcChhhcCcchhhhhcccCCCccEEEEEEeecCCCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCC
Confidence 9999999999999999988754 556899999987657899999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhhcCCC
Q 013893 415 AATEIELARRLKEFSFKETG 434 (434)
Q Consensus 415 G~~E~~l~~~L~~~a~~~~g 434 (434)
|+.||++|..|..+|+++.|
T Consensus 421 GapEieia~~L~~~a~t~eG 440 (534)
T KOG0358|consen 421 GAPEIEIALRLSALARTLEG 440 (534)
T ss_pred CCcchHHHHHHHHHHhhhcc
Confidence 99999999999999988765
No 23
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-80 Score=573.59 Aligned_cols=417 Identities=26% Similarity=0.416 Sum_probs=392.1
Q ss_pred ccccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcC--CCCEEEecCHHHHHhhccccChHHHHHHHH
Q 013893 11 QSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINH--LDKLFVTNDAATIVNELEVQHPAAKLLVLA 88 (434)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~--~g~~~iTndg~tIl~~l~~~hP~a~ll~~~ 88 (434)
.++|+++..+..+ +.+++..+.++..+.++++|||||+||+||++.. .|.+.+||||+|||+++.+++|+||+|++.
T Consensus 4 ~~i~~~~~~eErg-e~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpaAkvLv~~ 82 (527)
T KOG0363|consen 4 VQIFKDGATEERG-ENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPAAKVLVDI 82 (527)
T ss_pred hhhhcccchhhhh-hhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCchhhheecc
Confidence 4678999889888 7999999999999999999999999999999874 478999999999999999999999999999
Q ss_pred HHhhhhhhCCCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHh
Q 013893 89 GKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAA 168 (434)
Q Consensus 89 ~~~~~~~~GDGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~ 168 (434)
++.||.++|||||||++|+++||++|.+|+.+.+||+.|++|||.|.+.|++.|.+.+++... ....-+++|+++++|.
T Consensus 83 S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~-~~~kfr~DLl~iarTT 161 (527)
T KOG0363|consen 83 SKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSS-DKEKFREDLLKIARTT 161 (527)
T ss_pred ccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998876321 1112378999999999
Q ss_pred hcccc-cCchhhHHHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccceeeeeEEEeecC-CCCcceeecceEEEEee
Q 013893 169 VASKQ-FGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDA-VGSIKNMEKAKVAVFAG 246 (434)
Q Consensus 169 l~sk~-~~~~~~ls~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~-~~~~~~~~n~kIlll~~ 246 (434)
++||+ +...+||++|+++|+.++..+ -|++.|+|+|.+||+++||++-+|+++++.+ .+.|++++|+||++-|.
T Consensus 162 L~SKiLsq~kehFaelavdAV~rLkGs----~nL~~IqIIK~~Gg~l~dSfLDeGFlL~K~igv~qpkriena~iLIANT 237 (527)
T KOG0363|consen 162 LSSKILSQDKEHFAELAVDAVLRLKGS----TNLEAIQIIKKLGGKLEDSFLDEGFLLDKKIGVNQPKRIENAKILIANT 237 (527)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCC----CCccceeeehhcCCccccccccccceeccccCCCCcccccccceEEecC
Confidence 99995 566899999999999999754 4677899999999999999999999999987 57899999999999999
Q ss_pred eccccccccc-eEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHH
Q 013893 247 GVDTSATETK-GTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRR 325 (434)
Q Consensus 247 ~l~~~~~~~~-~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ 325 (434)
++|.++.+.. +.+.+++...+..+...|++.++.++++|.+.|+|+++...-|.++..++|...||++++..+.+-+||
T Consensus 238 ~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dagi~aIEHADFdGiER 317 (527)
T KOG0363|consen 238 PMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAGIMAIEHADFDGIER 317 (527)
T ss_pred CCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcCcceeecccchhHHH
Confidence 9999988764 679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeecccCCCCCCCCCcceeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhh
Q 013893 326 FCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMC 405 (434)
Q Consensus 326 ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~ 405 (434)
++.+||+.+++++++++..++|+|+.+++..+|+++++.|.||+. +..|||+|||+|++++||.+|++||||+++....
T Consensus 318 LalvtGGeI~STFd~p~~~klG~C~~IeeimiGed~li~FSGv~~-GeActIVlrGat~q~LDEaeRslHDALcVLaqtv 396 (527)
T KOG0363|consen 318 LALVTGGEIVSTFDNPELVKLGECDLIEEIMIGEDKLIKFSGVKL-GEACTIVLRGATQQILDEAERSLHDALCVLAQTV 396 (527)
T ss_pred HhhcccceeeeccCCcchhccccchhhHHHhcCccceeeeccccc-ccceEEEEecccHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999985 8899999999999999999999999999999999
Q ss_pred cCCeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013893 406 RDSRIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 406 ~~~~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
++.+++.||||.||..|..+.++|+..||
T Consensus 397 ~esrvv~GgG~sEm~Ma~av~~~A~~~pG 425 (527)
T KOG0363|consen 397 KESRVVLGGGCSEMLMAKAVDKEAQETPG 425 (527)
T ss_pred ccceeeecCCcHHHHHHHHHHHHHhhCCc
Confidence 99999999999999999999999999997
No 24
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.8e-77 Score=615.17 Aligned_cols=364 Identities=37% Similarity=0.612 Sum_probs=346.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHHhhhhhhCCCchHH
Q 013893 24 LDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLT 103 (434)
Q Consensus 24 ~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtts~ 103 (434)
.++++..|++||..++++++|||||+|++|||+++.|+++|||||+||+++|+++||+++++++++++|++++||||||+
T Consensus 6 ~~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~a~ll~~~~~~~~~~~GDGTtt~ 85 (464)
T cd00309 6 GEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPAAKLLVEVAKSQDDEVGDGTTTV 85 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHHHHHHHHHHHHHHhHhCCchhHH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhcccc-cCchhhHHH
Q 013893 104 ISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQ-FGQEEILCP 182 (434)
Q Consensus 104 vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~-~~~~~~ls~ 182 (434)
++|+++|++++.+++++|+||..|++||+.|++.++++|++++++. +..+.+.|.++++|+++||+ +.|+++|++
T Consensus 86 viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~----~~~~~~~l~~ia~tsl~sK~~~~~~~~l~~ 161 (464)
T cd00309 86 VVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPI----DVEDREELLKVATTSLNSKLVSGGDDFLGE 161 (464)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCcc----CCCCHHHHHHHhHhcccccccccchHHHHH
Confidence 9999999999999999999999999999999999999999999873 45678999999999999995 578999999
Q ss_pred HHHHHHHHhCCCCCCCccccceEEEEcCCCCcccceeeeeEEEeecCC--CCcceeecceEEEEeeeccccccccceEEE
Q 013893 183 LIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTSATETKGTVL 260 (434)
Q Consensus 183 Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~--~~~~~~~n~kIlll~~~l~~~~~~~~~~v~ 260 (434)
++++|+..+++++. .++.++|+|++++||+++||++++|++|++++. .|++.++||||++++++|++
T Consensus 162 l~~~Ai~~v~~~~~-~~~~~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m~~~~~n~~Ili~~~~Le~---------- 230 (464)
T cd00309 162 LVVDAVLKVGKENG-DVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYMPKRLENAKILLLDCKLEY---------- 230 (464)
T ss_pred HHHHHHHHhccccC-ccccceEEEEecCCCCcccceeeeeEEEecCCCCCCCceeecCceEEEEecCcce----------
Confidence 99999999987543 677889999999999999999999999999874 57899999999999999975
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCeecccCCC
Q 013893 261 IHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQ 340 (434)
Q Consensus 261 i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~~~~ 340 (434)
||+++++|++.+++||.++||++++++++++|+|||++|||++++++++
T Consensus 231 -------------------------------lIi~~~~I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii~~~~~ 279 (464)
T cd00309 231 -------------------------------VVIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVSRLED 279 (464)
T ss_pred -------------------------------EEecCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEeccccc
Confidence 9999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcCCeEEeCCCHHHHH
Q 013893 341 PNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIE 420 (434)
Q Consensus 341 l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGgG~~E~~ 420 (434)
++++++|+|+.|++.++|+++|++|.+++. ++.|||+|||+|+.+++|.+|+++||++++++++++|++|||||++|++
T Consensus 280 ~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~-~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ 358 (464)
T cd00309 280 LTPEDLGTAGLVEETKIGDEKYTFIEGCKG-GKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIE 358 (464)
T ss_pred CCcccCccccEEEEEEEcCeeEEEEEecCC-CCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHH
Confidence 999999999999999999999999999974 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCC
Q 013893 421 LARRLKEFSFKETG 434 (434)
Q Consensus 421 l~~~L~~~a~~~~g 434 (434)
|+++|++++.+.+|
T Consensus 359 ls~~L~~~~~~~~~ 372 (464)
T cd00309 359 LSKALEELAKTLPG 372 (464)
T ss_pred HHHHHHHHhcccch
Confidence 99999999876553
No 25
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=2.9e-75 Score=605.17 Aligned_cols=386 Identities=32% Similarity=0.552 Sum_probs=363.2
Q ss_pred HHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHHhhhhhhCCCchHHHHHHHHHHHHHHHH
Q 013893 38 LSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEEL 117 (434)
Q Consensus 38 l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtts~vlLa~~ll~~a~~l 117 (434)
|++++++||||+|++|||+++.|+++|||||+||+++|+++||+++++++++++|++++||||||+++|+++|++++.++
T Consensus 1 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~~P~~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~l 80 (485)
T PF00118_consen 1 LADIVKSSLGPKGRDKLIVNDSGKIIITNDGATILKSLKINHPIAKLLVEASKSQDEEVGDGTTSVVLLACELLRNALKL 80 (485)
T ss_dssp HHHHHGCCSSTTS-EEEEEESSSSEEEESSHHHHHHHSTBSSHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhcccCcCCCCCeEEEEcCCCCeEEEechhHHHHHhhhccchhhhHHHhHHHHHhhhccccceeeecccchhhhhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhcccc-cCchhhHHHHHHHHHHHhCCCCC
Q 013893 118 IRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQ-FGQEEILCPLIADACIQVCPKNP 196 (434)
Q Consensus 118 i~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~-~~~~~~ls~Lv~~ai~~v~~~~~ 196 (434)
+++|+||..|++||+.|++.+++.|++++++. +..+ +.++++++|++++|+ ..|.++|++++++|+..+.+
T Consensus 81 i~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~----~~~~-~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~--- 152 (485)
T PF00118_consen 81 IKKGIHPQEIIRGLQEALKIILEYLEKISIPI----NNDD-ESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKS--- 152 (485)
T ss_dssp HHTTS-HHHHHHHHHHHHHHHHHHHHHHSEES----TSTS-HHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTT---
T ss_pred hhccccccchhhhhhhhhhhhhhhhhhhhccc----cccc-hhhhhhhcccccccccccchhhhhhhHHHHHHhhcc---
Confidence 99999999999999999999999999998874 2122 899999999999995 57899999999999954432
Q ss_pred CCccccceEEEEcCCCCcccceeeeeEEEeecCC--CCcceeecceEEEEeeeccccccccceEEEecCHHHHHHHHHHH
Q 013893 197 ANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTE 274 (434)
Q Consensus 197 ~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~--~~~~~~~n~kIlll~~~l~~~~~~~~~~v~i~~~~~l~~~~~~E 274 (434)
++|+++++++++.|++.+||++++|++|++.+. +|+++++||||++++++|++.++ .+.++.++++++++.+.++|
T Consensus 153 -~~~~~~i~i~~i~g~~~~dS~li~Giv~~~~~~~~~~~~~~~~~~Ill~~~~L~~~~~-~~~~~~~~~~~~~~~~~~~e 230 (485)
T PF00118_consen 153 -NFDLDNIKIIKIPGGSISDSELINGIVLDKGFSSPNMPKKIENPKILLLNCPLEYSKS-FKSEIRITSPEQLDELSKQE 230 (485)
T ss_dssp -THHGGGEEEEEEESSSSGGEEEESEEEESSSBSSTTSBSEEESEEEEEESSEBSSCCH-STEEEEESSTHHHHHHHHHH
T ss_pred -cccccchhhhhhccccccccccccceeeeccccccccccccccceEEeeecccccccc-cccccchhhHHHHHHHHhhh
Confidence 278888999999999999999999999999874 57999999999999999999998 89999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcceeeEEE
Q 013893 275 EAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSV 354 (434)
Q Consensus 275 ~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~ 354 (434)
++++++++++|.+.|++||+++++|++.++++|.++||.+++++++++|++||++|||++++++++++++++|+|+.+++
T Consensus 231 ~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~ii~~~~~l~~~~lG~~~~v~~ 310 (485)
T PF00118_consen 231 KKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGILVIRRVSKEDLERIARATGASIISSLDDLSDEDLGFCKSVEE 310 (485)
T ss_dssp HHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHEEESSEHHHHHHHHHHHHTSBEBSSCGGSTGGGSEEEEEEEE
T ss_pred hhhhccccceEeeeccceeeeecccccccchhhhhhhhhccccchHHHHHhhhcccCCcEecccccccchhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred EEEcceEEEEEe--ecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcCCeEEeCCCHHHHHHHHHHHHhhhcC
Q 013893 355 EEIGGARVTIVR--NEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKE 432 (434)
Q Consensus 355 ~~ig~~~~~~~~--~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGgG~~E~~l~~~L~~~a~~~ 432 (434)
..+++++|++|+ ++. .++.+||+|||+++.+++|.+++++||+++++++++++++|||||++|++|+++|++++++.
T Consensus 311 ~~i~~~~~~~~~~~~~~-~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~~ 389 (485)
T PF00118_consen 311 REIGNKKYIFIEGIGCL-SSKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKSL 389 (485)
T ss_dssp EEETSSEEEEEEEHSES-SSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHCS
T ss_pred ccccccccccccccccc-ccCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhcc
Confidence 999999999999 465 38999999999999999999999999999999999999999999999999999999998876
Q ss_pred CC
Q 013893 433 TG 434 (434)
Q Consensus 433 ~g 434 (434)
++
T Consensus 390 ~~ 391 (485)
T PF00118_consen 390 SG 391 (485)
T ss_dssp SS
T ss_pred cC
Confidence 54
No 26
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-75 Score=597.78 Aligned_cols=405 Identities=30% Similarity=0.458 Sum_probs=377.7
Q ss_pred ccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHHhhhhhhCC
Q 013893 19 KHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGD 98 (434)
Q Consensus 19 ~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GD 98 (434)
+...+ ++++..|+.|+..+++++++||||+||+|||+++.|+++|||||+||+++|+++||.|+|+++++++|++++||
T Consensus 5 ~~~~~-~~a~~~~~~~~~~la~~vkttLGPkG~~k~l~~~~g~~~iTnDG~tIlkeielehp~akll~eva~~qd~e~GD 83 (524)
T COG0459 5 ERKFG-EDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPGAKLLVEVAKKQDDEAGD 83 (524)
T ss_pred ccccc-HHHHHHHHHHHHHHHHHHHhccCCCcCceEEecCCCCEEEecCcceehhhhhccCchhHHHHHHHHHHHHHhcC
Confidence 34455 69999999999999999999999999999999997799999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhcccccCchh
Q 013893 99 GANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEE 178 (434)
Q Consensus 99 Gtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~ 178 (434)
||||++||+++||+++.+++.+|+||..|++||++|.+.++++|++++.+.. ..+.+. +++.|++++|..+..+
T Consensus 84 GTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~----~~~~~~--~~~~t~v~sk~~~~~~ 157 (524)
T COG0459 84 GTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVS----DSEEEL--KIAITSVASKSANSDE 157 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCC----cchhhh--hhhhheeeeeeccChH
Confidence 9999999999999999999999999999999999999999999999998842 222223 8899999999664448
Q ss_pred hHHHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccceeeeeEEEeecC---CCCc-ceeecceEEEEeeeccccccc
Q 013893 179 ILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDA---VGSI-KNMEKAKVAVFAGGVDTSATE 254 (434)
Q Consensus 179 ~ls~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~---~~~~-~~~~n~kIlll~~~l~~~~~~ 254 (434)
+|++++++|+.+++.+.. |++.|.+.+..|++.+++++++|++|++++ ..|| +.++||+|++++++|++.+++
T Consensus 158 ~i~~lv~~Av~~v~~~~~---d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~~~~e~~~Ili~d~~l~~~k~~ 234 (524)
T COG0459 158 EIGELVVEAVEKVGKEQS---DLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLDKKLEIKKPE 234 (524)
T ss_pred HHHHHHHHHHHHhccccc---ccCCeEEEEecCCCccceEEEeeEEecCCccCCCCCCccccccceEEEEcccccccccc
Confidence 999999999999986532 788999999999999999999999999944 4688 899999999999999999999
Q ss_pred cceEEEecCHHHHHHHHHHHH-HHHHHHHHHHHHcCCe-EEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHH-HHHHHHhC
Q 013893 255 TKGTVLIHNAEQLENYAKTEE-AKVEGLIKAVAESGAE-VIVSGAAVGEMALHFCERYKLMVLKISSKFEL-RRFCRTTG 331 (434)
Q Consensus 255 ~~~~v~i~~~~~l~~~~~~E~-~~~~~~v~~i~~~~~~-lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L-~~ia~~tG 331 (434)
.+.++.+++++++..|.++|+ +.+..+++++.+.++| +++++++|+|.+++||.+.+|++++++.++++ ++|++++|
T Consensus 235 l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~~~l~~~~g 314 (524)
T COG0459 235 LPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGERLAKLGG 314 (524)
T ss_pred CcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhHHHHHHccC
Confidence 999999999999999999999 9999999999999999 99999999999999999999999999999999 89999999
Q ss_pred CeecccCCCCCCCCCcc--eeeEEEEEEcceEEEEEeecCC-CCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcCC
Q 013893 332 AVAMLKLCQPNPDDLGY--VDSVSVEEIGGARVTIVRNEGG-GNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDS 408 (434)
Q Consensus 332 a~ii~~~~~l~~~~lG~--~~~v~~~~ig~~~~~~~~~~~~-~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~~ 408 (434)
|++++.++++++..+|. |..|++..+|+.++.+|.+++. .++.|||++||+|+.+++|.+|+++|||+++++++++|
T Consensus 315 a~~v~~~~d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~g 394 (524)
T COG0459 315 AKIVSVLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQERKAKAGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEG 394 (524)
T ss_pred ceEEeecccCceeecCccccceEEEeeccchhhhhhhhhhhcCCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999 9999999999999999999863 26899999999999999999999999999999999999
Q ss_pred eEEeCCCHHHHHHHHHHHHhhhcCC
Q 013893 409 RIVPGAAATEIELARRLKEFSFKET 433 (434)
Q Consensus 409 ~vvpGgG~~E~~l~~~L~~~a~~~~ 433 (434)
++|||||++|++++.+|++++.+.+
T Consensus 395 ~iV~GGGa~e~~~a~~L~~~~~~~~ 419 (524)
T COG0459 395 KIVPGGGAAEIEAALRLREYAMTVE 419 (524)
T ss_pred CeEeCCCHHHHHHHHHHHhhhccCC
Confidence 9999999999999999999854443
No 27
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-75 Score=559.68 Aligned_cols=408 Identities=28% Similarity=0.470 Sum_probs=381.2
Q ss_pred ccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHHhhhhhhCC
Q 013893 19 KHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGD 98 (434)
Q Consensus 19 ~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GD 98 (434)
...+| +.++..|..|+.++++++++||||-|++||++|+.|++.+||||+|||+.|.++||++|+|++.++.|++++||
T Consensus 13 e~~sg-~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa~KiLvelaq~qd~evgD 91 (545)
T KOG0360|consen 13 ERLSG-ERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPAAKVLVELAQLQDEEVGD 91 (545)
T ss_pred Ccccc-hhhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchHHHHHHHHHHhccccccC
Confidence 34567 68999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhh-hhcccCCCCCCCHHHHHHHHHHhhccc-ccCc
Q 013893 99 GANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEEL-VEEGSENMDVRNTEEVIYRMKAAVASK-QFGQ 176 (434)
Q Consensus 99 Gtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~i~~t~l~sk-~~~~ 176 (434)
|||++++++++|+++|.+|+..++||..|++||+.|+..+++++.+- ..+ +|...++.|.++++|+++|| +...
T Consensus 92 gttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~----vd~lg~~~Lin~~ktsmsSK~i~~d 167 (545)
T KOG0360|consen 92 GTTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKP----VDSLGTQILINLAKTSMSSKIIGMD 167 (545)
T ss_pred CceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceee----hhhcchHHHHHHHHhhhcceecccc
Confidence 99999999999999999999999999999999999999999998864 333 36677899999999999999 5677
Q ss_pred hhhHHHHHHHHHHHhCCC---CCCCccccceEEEEcCCCCcccceeeeeEEEeecCC--CCcceeecceEEEEeeecccc
Q 013893 177 EEILCPLIADACIQVCPK---NPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTS 251 (434)
Q Consensus 177 ~~~ls~Lv~~ai~~v~~~---~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~--~~~~~~~n~kIlll~~~l~~~ 251 (434)
.++|++++++|+..+.-- +.....++.++|.|..|.+.-+|.+++|+.++.... .||+.+.|+||+++++.|...
T Consensus 168 s~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~~asq~m~~~i~~~Kiacld~~Lqk~ 247 (545)
T KOG0360|consen 168 SDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESMLLPGYALNCSVASQMMPLRIKNAKIACLDFTLQKT 247 (545)
T ss_pred hHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccchhheeecceeeeccHhhhccccccccceeeeEecccccc
Confidence 899999999999987532 334567789999999999999999999999998873 689999999999999999888
Q ss_pred ccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhC
Q 013893 252 ATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTG 331 (434)
Q Consensus 252 ~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia~~tG 331 (434)
+.+....+.+.+++.++.+.+.|....++.+++|...|+|||+++++|||..++||.++|+++|||+++++|++||++||
T Consensus 248 km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veagamAVrR~~k~dlk~iakatG 327 (545)
T KOG0360|consen 248 KMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAGAMAVRRCKKEDLKRIAKATG 327 (545)
T ss_pred cccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcchhhhHHHHHHHHHHHHHhhC
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeecccCCCC------CCCCCcceeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhh
Q 013893 332 AVAMLKLCQP------NPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMC 405 (434)
Q Consensus 332 a~ii~~~~~l------~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~ 405 (434)
|++++++.++ ++..+|+|+.|.+.+|+++.++++.+.+. ..|+|+|||++++.+||++|++|||+++++..+
T Consensus 328 at~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka--~~aSiILrgaNd~~~DEmers~hdaL~VlkrtL 405 (545)
T KOG0360|consen 328 ATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKA--TSASIILRGANDFMLDEMERSLHDALCVLKRTL 405 (545)
T ss_pred CeeeehhhccccccccChhhccchhHHHHHhcccceeEEeccCcc--ceeeEEEecCCcccHhhhccchhhHHHHHHHHh
Confidence 9999999755 45679999999999999999999999874 499999999999999999999999999999999
Q ss_pred cCCeEEeCCCHHHHHHHHHHHHhhhcCC
Q 013893 406 RDSRIVPGAAATEIELARRLKEFSFKET 433 (434)
Q Consensus 406 ~~~~vvpGgG~~E~~l~~~L~~~a~~~~ 433 (434)
+.+++||||||+|.+|+-+|+.||.+++
T Consensus 406 es~~vvpGGG~vE~aLs~yle~~a~s~~ 433 (545)
T KOG0360|consen 406 ESKSVVPGGGAVETALSIYLENFATSVG 433 (545)
T ss_pred ccCccccCccHHHHHHHHHHHhhcccCc
Confidence 9999999999999999999999998764
No 28
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-75 Score=552.69 Aligned_cols=416 Identities=26% Similarity=0.475 Sum_probs=395.3
Q ss_pred ccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHHhh
Q 013893 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQ 92 (434)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~ 92 (434)
.+..++...+| ..+...||+|.++++++++||+||+.|.||+.++.|.+..||||..||+++++.||+|+-+++.+.+|
T Consensus 7 ~~~~~~~re~g-~kvq~~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tndg~ailrei~Vahpaaksmiel~rtq 85 (527)
T KOG0364|consen 7 VLSKNTKRESG-RKVQLGNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQ 85 (527)
T ss_pred ecccccCcCcc-ccccccchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCcHHHHHHHhhcCcchhhHhhhhhcc
Confidence 34556677778 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhccc
Q 013893 93 QEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASK 172 (434)
Q Consensus 93 ~~~~GDGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk 172 (434)
|+++||||||+++|++++|.++..++++++||..|+++|.+|++.++..+++++.+ +|.+|...+++++++++.+|
T Consensus 86 deevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~----~d~~~~~km~~vi~~~v~tk 161 (527)
T KOG0364|consen 86 DEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIP----VDVKDQAKMLRVINSSVGTK 161 (527)
T ss_pred cccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhccc----CCcccHHHHHhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999998877 37788899999999999999
Q ss_pred c-cCchhhHHHHHHHHHHHhCCCCCCCccc-cceEEEEcCCCCcccceeeeeEEEeecCC--CCcceeecceEEEEeeec
Q 013893 173 Q-FGQEEILCPLIADACIQVCPKNPANFNV-DNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGV 248 (434)
Q Consensus 173 ~-~~~~~~ls~Lv~~ai~~v~~~~~~~~~~-~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~--~~~~~~~n~kIlll~~~l 248 (434)
+ +.|++..+++..+|+..++.+++..||+ .+.++.|++||.+++|++++|+.+.++.. .|++.++||||++++|||
T Consensus 162 ~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpkmrr~IenprivLlD~~L 241 (527)
T KOG0364|consen 162 FNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPKMRRAIENPRIVLLDCPL 241 (527)
T ss_pred hhhhhcchhhhHHHHHHHHhhhccCceechhhhccccccCcccccccceecceeeccccCcHHHHHHhhcCcEEEecCCc
Confidence 6 5799999999999999998876667888 59999999999999999999999999875 489999999999999999
Q ss_pred cccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHH
Q 013893 249 DTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCR 328 (434)
Q Consensus 249 ~~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia~ 328 (434)
+|.+.+..+++.+..-+++...++-|++++..+++.|....|+||+++++++|.+++||.++||.+++++++.|-.|+++
T Consensus 242 eykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~iT~~rr~rKtDn~ria~ 321 (527)
T KOG0364|consen 242 EYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANITAIRRLRKTDNNRIAR 321 (527)
T ss_pred cCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCchhhhhhhccccchhhh
Confidence 99999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeecccCCCCCCCCCcc-eeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcC
Q 013893 329 TTGAVAMLKLCQPNPDDLGY-VDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRD 407 (434)
Q Consensus 329 ~tGa~ii~~~~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~ 407 (434)
++||+++++.+++.+.+.|+ |+.|++.++|++.|+||..|.. |+.|||++|||+..+++|.+|.++||+.+.++.+-+
T Consensus 322 acga~iv~rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~-pkaCtillrg~skdil~e~ernlqda~~varn~ii~ 400 (527)
T KOG0364|consen 322 ACGARIVNRPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKE-PKACTILLRGPSKDILNEVERNLQDAMGVARNVIIN 400 (527)
T ss_pred hcCceeccChhhCchhccCcccceeeeeccCchhhhhhhhcCC-CcceEEEeccCchhHHHHHHHHhhhHHHHHHHhccC
Confidence 99999999999999999996 8899999999999999999985 999999999999999999999999999999999999
Q ss_pred CeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013893 408 SRIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 408 ~~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
|+++||||++||.+|+.|++.+...+|
T Consensus 401 PklvPGGGAtEMAvs~~L~qksa~~~G 427 (527)
T KOG0364|consen 401 PKLVPGGGATEMAVSHELRQKSALMTG 427 (527)
T ss_pred CcccCCccHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999998776654
No 29
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=4.7e-70 Score=565.64 Aligned_cols=361 Identities=23% Similarity=0.336 Sum_probs=325.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccCh----HHHHHHHHHHhhhhhhCCCc
Q 013893 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP----AAKLLVLAGKAQQEEIGDGA 100 (434)
Q Consensus 25 ~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGt 100 (434)
++++..|+.++.+++++++|||||+||+|||+++.|+++|||||+||+++++++|| +|+|++++|++|++++||||
T Consensus 9 ~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~GDGT 88 (542)
T PRK12849 9 EEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKTNDVAGDGT 88 (542)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHhcCCccCCCc
Confidence 69999999999999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhcccccCchhhH
Q 013893 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (434)
Q Consensus 101 ts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (434)
||+++|+++||++|.+|+++|+||..|++||+.|++.+++.|+++++|. .+.+.|.++++|+.+ +++++
T Consensus 89 TtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~------~~~~~l~~va~ts~~-----~~~~l 157 (542)
T PRK12849 89 TTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPV------SGSEEIAQVATISAN-----GDEEI 157 (542)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCC------CCHHHHHHHHHHhcC-----ChHHH
Confidence 9999999999999999999999999999999999999999999998863 367789999998874 47899
Q ss_pred HHHHHHHHHHhCCCCCCCccccceEEEEcCCCCccc-ceeeeeEEEeecCC---------CCcceeecceEEEEeeeccc
Q 013893 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHN-STIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDT 250 (434)
Q Consensus 181 s~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~d-S~~i~G~v~~~~~~---------~~~~~~~n~kIlll~~~l~~ 250 (434)
++++++|+..+++++ . +.+. .|++.+| |++++|++|++++. .|++.++||+|+++++.+
T Consensus 158 ~~lv~~Av~~v~~~g--~-----i~i~--~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i-- 226 (542)
T PRK12849 158 GELIAEAMEKVGKDG--V-----ITVE--ESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKI-- 226 (542)
T ss_pred HHHHHHHHHHhccCC--c-----EeEE--eCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCc--
Confidence 999999999997543 2 3333 6888876 79999999998763 368899999999999954
Q ss_pred cccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHC------CeEEEEeCC-----
Q 013893 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERY------KLMVLKISS----- 319 (434)
Q Consensus 251 ~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~------~I~~v~~v~----- 319 (434)
++++++. ++++++.+.+++|||++++|++.++++|.++ +|++|++++
T Consensus 227 -----------~~~~~~~-----------~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r 284 (542)
T PRK12849 227 -----------SSLQDLL-----------PLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRR 284 (542)
T ss_pred -----------CCHHHHH-----------HHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchh
Confidence 4555554 3678899999999999999999999999988 999999987
Q ss_pred HHHHHHHHHHhCCeecc-----cCCCCCCCCCcceeeEEEEEEcceEEEEEeecCCC-----------------------
Q 013893 320 KFELRRFCRTTGAVAML-----KLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGG----------------------- 371 (434)
Q Consensus 320 ~~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~----------------------- 371 (434)
+++|+|||++|||++++ ++++++++++|+|+.|++.+ ++++++.+|+..
T Consensus 285 ~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~ 361 (542)
T PRK12849 285 KAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITK---DNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDR 361 (542)
T ss_pred HhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEee---eeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 55699999999999999 68888888999999998864 788889888631
Q ss_pred -----------CceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcCCeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013893 372 -----------NSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 372 -----------~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
++.|||+|||+|+.+++|.+|+++||++++++++++| +|||||++|++++.+|++++ +++|
T Consensus 362 ~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g-~VpGGGa~e~~ls~~L~~~~-~~~g 433 (542)
T PRK12849 362 EKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEG-IVPGGGVALLRAAKALDELA-GLNG 433 (542)
T ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eecCCCHHHHHHHHHHHHhh-CCCh
Confidence 2589999999999999999999999999999999998 99999999999999999987 6654
No 30
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=7.7e-70 Score=562.66 Aligned_cols=361 Identities=23% Similarity=0.346 Sum_probs=328.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccCh----HHHHHHHHHHhhhhhhCCCc
Q 013893 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP----AAKLLVLAGKAQQEEIGDGA 100 (434)
Q Consensus 25 ~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGt 100 (434)
++++..|+++|..++++++|||||+||+|||+++.|+++|||||+||+++++++|| +|+++++++++|++++||||
T Consensus 7 ~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~GDGT 86 (520)
T cd03344 7 EEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVAGDGT 86 (520)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhhccccCCCc
Confidence 58999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhcccccCchhhH
Q 013893 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (434)
Q Consensus 101 ts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (434)
||+++|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|. ++.+.|.++++|++++ ++++
T Consensus 87 TtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i------~~~~~l~~va~ts~~~-----~~~l 155 (520)
T cd03344 87 TTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPV------KTKEEIAQVATISANG-----DEEI 155 (520)
T ss_pred chHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCC------CCHHHHHHHHHHhcCC-----hHHH
Confidence 9999999999999999999999999999999999999999999998863 3688999999999975 6899
Q ss_pred HHHHHHHHHHhCCCCCCCccccceEEEEcCCCCccc-ceeeeeEEEeecCC---------CCcceeecceEEEEeeeccc
Q 013893 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHN-STIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDT 250 (434)
Q Consensus 181 s~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~d-S~~i~G~v~~~~~~---------~~~~~~~n~kIlll~~~l~~ 250 (434)
++++++|+..+++++ .|.+ .+|++.+| +++++|++|++++. .|++.++||+|+++++++
T Consensus 156 ~~lv~~A~~~v~~~~-------~i~v--~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l-- 224 (520)
T cd03344 156 GELIAEAMEKVGKDG-------VITV--EEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKI-- 224 (520)
T ss_pred HHHHHHHHHHhccCC-------cEEE--EeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCC--
Confidence 999999999997542 2444 47999988 79999999998753 245789999999999985
Q ss_pred cccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCe------EEEEeC-----C
Q 013893 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKL------MVLKIS-----S 319 (434)
Q Consensus 251 ~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I------~~v~~v-----~ 319 (434)
++++++. ++++.+.+.|++|||++++|++.++++|.++|| ++|+++ +
T Consensus 225 -----------~~~~~l~-----------~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~ 282 (520)
T cd03344 225 -----------SSIQELL-----------PILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRR 282 (520)
T ss_pred -----------CCHHHHH-----------HHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCccc
Confidence 4555544 357889999999999999999999999999988 999977 8
Q ss_pred HHHHHHHHHHhCCeecc-----cCCCCCCCCCcceeeEEEEEEcceEEEEEeecCCC-----------------------
Q 013893 320 KFELRRFCRTTGAVAML-----KLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGG----------------------- 371 (434)
Q Consensus 320 ~~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~----------------------- 371 (434)
+++|+|||++|||++++ ++++++++++|+|+.|++.+ ++++++.+|+..
T Consensus 283 ~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~ 359 (520)
T cd03344 283 KAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTK---DDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDK 359 (520)
T ss_pred HHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEee---ceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999 78888888999999999876 788889888531
Q ss_pred -----------CceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcCCeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013893 372 -----------NSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 372 -----------~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
++.|||+|||+|+.+++|.+|+++||++++++++++| +|||||++|++++.+|++++. .+|
T Consensus 360 ~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~~~-~~~ 431 (520)
T cd03344 360 EKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEG-IVPGGGVALLRASPALDKLKA-LNG 431 (520)
T ss_pred HHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCCcHHHHHHHHHHHHhcc-CCh
Confidence 2599999999999999999999999999999999998 999999999999999999876 553
No 31
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.1e-69 Score=562.80 Aligned_cols=361 Identities=22% Similarity=0.337 Sum_probs=329.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccCh----HHHHHHHHHHhhhhhhCCCc
Q 013893 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP----AAKLLVLAGKAQQEEIGDGA 100 (434)
Q Consensus 25 ~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGt 100 (434)
++++..|+.||..++++++|||||+|++|||+++.|+++|||||+|||++|+++|| +|+|+++++++|++++||||
T Consensus 9 ~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~~qd~e~GDGT 88 (542)
T PRK00013 9 EDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVAGDGT 88 (542)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHHhcCcccCCcc
Confidence 68999999999999999999999999999999999999999999999999999999 69999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhcccccCchhhH
Q 013893 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (434)
Q Consensus 101 ts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (434)
||+++|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|. .+.+.|.+++.|+++ +++.+
T Consensus 89 TtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~------~~~~~l~~va~ts~~-----~~~~l 157 (542)
T PRK00013 89 TTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPV------EDKEEIAQVATISAN-----GDEEI 157 (542)
T ss_pred chHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCC------CCHHHHHHHHHhccc-----chHHH
Confidence 9999999999999999999999999999999999999999999998873 267889999988774 47899
Q ss_pred HHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccceeeeeEEEeecCC---------CCcceeecceEEEEeeecccc
Q 013893 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDTS 251 (434)
Q Consensus 181 s~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~---------~~~~~~~n~kIlll~~~l~~~ 251 (434)
++++++|+..+++++ .|+|.+.+| ...+|++++|++|++++. +|++.++||+|+++|+.+
T Consensus 158 s~lv~~Av~~v~~~g-------~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i--- 226 (542)
T PRK00013 158 GKLIAEAMEKVGKEG-------VITVEESKG-FETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKI--- 226 (542)
T ss_pred HHHHHHHHHHhCcCC-------cEEEEEcCC-CCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCcc---
Confidence 999999999997542 378888777 778999999999998763 358889999999999954
Q ss_pred ccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCC------eEEEEeCC-----H
Q 013893 252 ATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYK------LMVLKISS-----K 320 (434)
Q Consensus 252 ~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~------I~~v~~v~-----~ 320 (434)
++++++. ++++++.+.|++|||++++|++.++++|.+++ |++|++++ +
T Consensus 227 ----------~~~~~l~-----------~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~ 285 (542)
T PRK00013 227 ----------SNIQDLL-----------PVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRK 285 (542)
T ss_pred ----------CCHHHHH-----------HHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchh
Confidence 4566654 56788999999999999999999999999986 99999987 8
Q ss_pred HHHHHHHHHhCCeecc-----cCCCCCCCCCcceeeEEEEEEcceEEEEEeecCCCCc----------------------
Q 013893 321 FELRRFCRTTGAVAML-----KLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNS---------------------- 373 (434)
Q Consensus 321 ~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~---------------------- 373 (434)
++|+|||++|||++++ ++++++++++|+|+.|++.. ++|++|++|+. ++
T Consensus 286 ~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~-~~~i~~ri~~l~~~~~~~~~~~~~ 361 (542)
T PRK00013 286 AMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTK---DNTTIVDGAGD-KEAIKARVAQIKAQIEETTSDYDR 361 (542)
T ss_pred hhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEec---CEEEEEeCCCC-HHHHHHHHHHHHHHHhhcCCHHHH
Confidence 8999999999999999 79999999999999999874 78999988863 43
Q ss_pred -------------eEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcCCeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013893 374 -------------VSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 374 -------------~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
.+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|++++++|+++ ++++|
T Consensus 362 ~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g-~VpGGGa~e~~~s~~L~~~-~~~~~ 433 (542)
T PRK00013 362 EKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEG-IVPGGGVALLRAAPALEAL-KGLNG 433 (542)
T ss_pred HHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCcHHHHHHHHHHHHHh-cCCCh
Confidence 78999999999999999999999999999999998 9999999999999999987 55543
No 32
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=1.9e-69 Score=563.80 Aligned_cols=362 Identities=19% Similarity=0.304 Sum_probs=326.9
Q ss_pred cccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccCh----HHHHHHHHHHhhhhh
Q 013893 20 HMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP----AAKLLVLAGKAQQEE 95 (434)
Q Consensus 20 ~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP----~a~ll~~~~~~~~~~ 95 (434)
...+ ++++..|+.+|..++++++|||||+||+|||+++.|+++|||||+||+++++++|| +|+|+++++++|+++
T Consensus 17 ~~~~-~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a~~qd~e 95 (555)
T PTZ00114 17 IRFG-DEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASKTNDK 95 (555)
T ss_pred hhhH-HHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHHHhhccc
Confidence 3345 69999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred hCCCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhcccccC
Q 013893 96 IGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFG 175 (434)
Q Consensus 96 ~GDGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~ 175 (434)
+||||||+++||++||+++.+++++|+||..|++||+.|.+.++++|++++.|. .+.+.|.++++|++++
T Consensus 96 vGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v------~~~~~l~~va~ts~~~---- 165 (555)
T PTZ00114 96 AGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPV------KTKEDILNVATISANG---- 165 (555)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCC------CCHHHHHHHHHHHcCC----
Confidence 999999999999999999999999999999999999999999999999998763 2677899999998865
Q ss_pred chhhHHHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccc-eeeeeEEEeecCC---------CCcceeecceEEEEe
Q 013893 176 QEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNS-TIVRGMVLKSDAV---------GSIKNMEKAKVAVFA 245 (434)
Q Consensus 176 ~~~~ls~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS-~~i~G~v~~~~~~---------~~~~~~~n~kIlll~ 245 (434)
++++++++++|+..+++++ .|.+.+|++..|| ++++|++|++++. .|++.++||+|++++
T Consensus 166 -~~~l~~li~eAv~~vg~~g---------~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d 235 (555)
T PTZ00114 166 -DVEIGSLIADAMDKVGKDG---------TITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTD 235 (555)
T ss_pred -hHHHHHHHHHHHHHhCcCC---------cEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEc
Confidence 5789999999999997542 2677789999998 8999999998763 368889999999999
Q ss_pred eeccccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCC------eEEEEe--
Q 013893 246 GGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYK------LMVLKI-- 317 (434)
Q Consensus 246 ~~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~------I~~v~~-- 317 (434)
++|+ +++++ ..+++++.+.+++|+|++++|++.++++|..++ |++|++
T Consensus 236 ~~L~-------------~~~~i-----------~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~ 291 (555)
T PTZ00114 236 KKIS-------------SIQSI-----------LPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPG 291 (555)
T ss_pred CCCC-------------CHHHH-----------HHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCC
Confidence 9986 33443 456778999999999999999999999999886 999988
Q ss_pred ---CCHHHHHHHHHHhCCeecccC------CCCCCCCCcceeeEEEEEEcceEEEEEeecCC------------------
Q 013893 318 ---SSKFELRRFCRTTGAVAMLKL------CQPNPDDLGYVDSVSVEEIGGARVTIVRNEGG------------------ 370 (434)
Q Consensus 318 ---v~~~~L~~ia~~tGa~ii~~~------~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~------------------ 370 (434)
+++++|+|||.+|||+++++. ++++++++|+|+.|++.+ ++++++.+++.
T Consensus 292 ~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~---~~~~~~~~~~~~~~i~~r~~~l~~~~~~~ 368 (555)
T PTZ00114 292 FGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTK---DETVILTGGGDKAEIKERVELLRSQIERT 368 (555)
T ss_pred CCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEe---ceEEEEeCCCcHHHHHHHHHHHHHHHHhc
Confidence 567999999999999999997 777788899999999987 45666766540
Q ss_pred ----------------CCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcCCeEEeCCCHHHHHHHHHHHHhhh
Q 013893 371 ----------------GNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSF 430 (434)
Q Consensus 371 ----------------~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGgG~~E~~l~~~L~~~a~ 430 (434)
+++.+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+++|.+|++++.
T Consensus 369 ~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~g-vVpGGGa~e~~~s~~L~~~~~ 443 (555)
T PTZ00114 369 TSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEG-IVPGGGVALLRASKLLDKLEE 443 (555)
T ss_pred CCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCcHHHHHHHHHHHHHhh
Confidence 36899999999999999999999999999999999988 999999999999999999875
No 33
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.6e-68 Score=554.68 Aligned_cols=359 Identities=21% Similarity=0.310 Sum_probs=325.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccCh----HHHHHHHHHHhhhhhhCCCc
Q 013893 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP----AAKLLVLAGKAQQEEIGDGA 100 (434)
Q Consensus 25 ~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGt 100 (434)
++++..|+.++..++++++|||||+||+|||+++.|+++|||||+||+++++++|| +|+|+++++++|++++||||
T Consensus 10 ~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e~GDGT 89 (541)
T PRK12851 10 VEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKTNDVAGDGT 89 (541)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHHhhhHhhCCCc
Confidence 58999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhcccccCchhhH
Q 013893 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (434)
Q Consensus 101 ts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (434)
||+++|+++||+++.+++++|+||..|++||+.|++.++++|++++++. + +.+.+.+++++++ ++++.|
T Consensus 90 TtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~----~--~~~~l~~va~~s~-----~~~~~l 158 (541)
T PRK12851 90 TTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPV----T--TNAEIAQVATISA-----NGDAEI 158 (541)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCC----C--CHHHHHHHHHHhc-----cChHHH
Confidence 9999999999999999999999999999999999999999999998863 2 5678999998876 357899
Q ss_pred HHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccceeeeeEEEeecCC---------CCcceeecceEEEEeeecccc
Q 013893 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDTS 251 (434)
Q Consensus 181 s~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~---------~~~~~~~n~kIlll~~~l~~~ 251 (434)
++++++|+..+++++ .|+|.+.. +...++++++|++|++++. +|++.++||+|+++|++++
T Consensus 159 ~~lv~~Av~~vg~~g-------~i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~-- 228 (541)
T PRK12851 159 GRLVAEAMEKVGNEG-------VITVEESK-TAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKIS-- 228 (541)
T ss_pred HHHHHHHHHHhcccC-------ceEEEEcc-CCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcC--
Confidence 999999999997542 35666655 5667899999999998762 3899999999999999753
Q ss_pred ccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCe------EEEEe-----CCH
Q 013893 252 ATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKL------MVLKI-----SSK 320 (434)
Q Consensus 252 ~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I------~~v~~-----v~~ 320 (434)
+.++ +.++++.+.+.+++|||++++|++.++++|.++|| ++|++ +++
T Consensus 229 -----------~~~~-----------i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~ 286 (541)
T PRK12851 229 -----------NLQD-----------LLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRK 286 (541)
T ss_pred -----------cHHH-----------HHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccH
Confidence 2222 45678899999999999999999999999999986 89997 889
Q ss_pred HHHHHHHHHhCCeecc-----cCCCCCCCCCcceeeEEEEEEcceEEEEEeecCCCC-----------------------
Q 013893 321 FELRRFCRTTGAVAML-----KLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGN----------------------- 372 (434)
Q Consensus 321 ~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~----------------------- 372 (434)
++|+|||++|||++++ ++++++++++|+|+.|++.+ ++|+++.+|+. +
T Consensus 287 ~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~-~~~i~~ri~~l~~~~~~~~~~~~~ 362 (541)
T PRK12851 287 AMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEK---ENTTIIDGAGS-KTEIEGRVAQIRAQIEETTSDYDR 362 (541)
T ss_pred hHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEc---ceEEEEcCCCC-HHHHHHHHHHHHHHHHhcCCHHHH
Confidence 9999999999999999 68888888999999999976 78888988763 3
Q ss_pred ------------ceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcCCeEEeCCCHHHHHHHHHHHHhhhc
Q 013893 373 ------------SVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFK 431 (434)
Q Consensus 373 ------------~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGgG~~E~~l~~~L~~~a~~ 431 (434)
..+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+++|.+|++++..
T Consensus 363 ~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g-~VpGGGa~e~~~s~~L~~~~~~ 432 (541)
T PRK12851 363 EKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRAVKALDKLETA 432 (541)
T ss_pred HHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCchHHHHHHHHHHHHHhcC
Confidence 288999999999999999999999999999999998 9999999999999999988754
No 34
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=1.3e-68 Score=554.46 Aligned_cols=360 Identities=22% Similarity=0.331 Sum_probs=323.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccCh----HHHHHHHHHHhhhhhhCCCc
Q 013893 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP----AAKLLVLAGKAQQEEIGDGA 100 (434)
Q Consensus 25 ~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGt 100 (434)
++++..|++|+.+++++++|||||+||+|||+++.|+++|||||+||+++++++|| +++++++++++|++++||||
T Consensus 8 ~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e~GDGT 87 (524)
T TIGR02348 8 EEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTNDVAGDGT 87 (524)
T ss_pred HHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHccCceeCCCc
Confidence 59999999999999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhcccccCchhhH
Q 013893 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (434)
Q Consensus 101 ts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (434)
||+++|+++||+++.+++++|+||..|++||+.|++.++++|+++++|. .+.+.|.++++++.+ +++++
T Consensus 88 TtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~------~~~~~l~~va~ts~~-----~~~~l 156 (524)
T TIGR02348 88 TTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPV------KGKKEIAQVATISAN-----NDEEI 156 (524)
T ss_pred chHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCC------CCHHHHHHHHHHhcc-----ChHHH
Confidence 9999999999999999999999999999999999999999999998863 267889999998875 47899
Q ss_pred HHHHHHHHHHhCCCCCCCccccceEEEEcCCCCc-ccceeeeeEEEeecCC---------CCcceeecceEEEEeeeccc
Q 013893 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGL-HNSTIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDT 250 (434)
Q Consensus 181 s~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~-~dS~~i~G~v~~~~~~---------~~~~~~~n~kIlll~~~l~~ 250 (434)
++++++|+..+++++ .|.|.. |+.. ++|++++|++|++++. .|++.++||+|+++++.+
T Consensus 157 ~~lv~~A~~~v~~~~-------~i~v~~--g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i-- 225 (524)
T TIGR02348 157 GSLIAEAMEKVGKDG-------VITVEE--SKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKI-- 225 (524)
T ss_pred HHHHHHHHHHhCcCC-------cEeeec--CCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCc--
Confidence 999999999997643 244443 6666 6799999999998863 257889999999999964
Q ss_pred cccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHC------CeEEEEeCCH----
Q 013893 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERY------KLMVLKISSK---- 320 (434)
Q Consensus 251 ~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~------~I~~v~~v~~---- 320 (434)
++++++ .++++.+.+.|++|||++++|++.++++|.++ +|++|++++.
T Consensus 226 -----------~~~~~i-----------~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r 283 (524)
T TIGR02348 226 -----------SNIKDL-----------LPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRR 283 (524)
T ss_pred -----------CCHHHH-----------HHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchh
Confidence 345554 45688899999999999999999999999886 8999998854
Q ss_pred -HHHHHHHHHhCCeecc-----cCCCCCCCCCcceeeEEEEEEcceEEEEEeecCCCCc---------------------
Q 013893 321 -FELRRFCRTTGAVAML-----KLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNS--------------------- 373 (434)
Q Consensus 321 -~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~--------------------- 373 (434)
++|+|||++|||++++ ++++++++++|+|+.|++.+ ++++++.+++. ++
T Consensus 284 ~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~-~~~~~~ri~~l~~~~~~~~~~~~ 359 (524)
T TIGR02348 284 KAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDK---DNTTIVEGAGD-KAAIKARVAQIKAQIEETTSDYD 359 (524)
T ss_pred hhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEee---cEEEEEcCCCC-HHHHHHHHHHHHHHHHhcCCHHH
Confidence 7999999999999999 89999999999999998875 68888888752 33
Q ss_pred --------------eEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcCCeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013893 374 --------------VSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 374 --------------~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
.+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|++++.+|++ +.+.+|
T Consensus 360 ~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g-~VpGGGa~e~~~s~~L~~-~~~~~~ 432 (524)
T TIGR02348 360 REKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEG-IVPGGGVALLRAAAALEG-LKGDNE 432 (524)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHH-hccCCh
Confidence 78999999999999999999999999999999998 999999999999999998 666553
No 35
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=4.4e-68 Score=551.73 Aligned_cols=361 Identities=20% Similarity=0.332 Sum_probs=322.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChH----HHHHHHHHHhhhhhhCCCc
Q 013893 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPA----AKLLVLAGKAQQEEIGDGA 100 (434)
Q Consensus 25 ~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~----a~ll~~~~~~~~~~~GDGt 100 (434)
++++..|+.||.+++++++|||||+||+|||+++.|+++|||||+||+++++++||+ |+|+++++++|++++||||
T Consensus 10 ~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~~qd~e~GDGT 89 (544)
T PRK12850 10 TDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKTNDLAGDGT 89 (544)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHhhhcchhcCCc
Confidence 589999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhcccccCchhhH
Q 013893 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (434)
Q Consensus 101 ts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (434)
||+++|+++||++|.+++++|+||..|++||+.|++.++++|++++.+. .+.+.|.+++++++++ ++.+
T Consensus 90 Tt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v------~~~~~l~~va~~s~~~-----~~~l 158 (544)
T PRK12850 90 TTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKV------TSSKEIAQVATISANG-----DESI 158 (544)
T ss_pred chHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCC------CCHHHHHHHHHHhcCC-----HHHH
Confidence 9999999999999999999999999999999999999999999998763 3678899999988765 6899
Q ss_pred HHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccceeeeeEEEeecCC---------CCcceeecceEEEEeeecccc
Q 013893 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDTS 251 (434)
Q Consensus 181 s~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~---------~~~~~~~n~kIlll~~~l~~~ 251 (434)
++++++|+..+++++ .++++.+ +..| .++++++|++|++++. .|++.++||+|+++|+.+
T Consensus 159 ~~lv~eAv~~vg~~g--~i~v~~~---~~~g---~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i--- 227 (544)
T PRK12850 159 GEMIAEAMDKVGKEG--VITVEEA---KTLG---TELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKI--- 227 (544)
T ss_pred HHHHHHHHHHhcccC--ceeeEEc---cccC---cceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEeccc---
Confidence 999999999997643 3444332 2233 6889999999998763 258889999999999954
Q ss_pred ccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCe------EEEEe-----CCH
Q 013893 252 ATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKL------MVLKI-----SSK 320 (434)
Q Consensus 252 ~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I------~~v~~-----v~~ 320 (434)
++.++ +.++++++.+.|++|||++++|++.++++|.++|| ++|++ +++
T Consensus 228 ----------~~~~~-----------i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~ 286 (544)
T PRK12850 228 ----------SNLQD-----------LLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRK 286 (544)
T ss_pred ----------CCHHH-----------HHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccH
Confidence 23222 55678899999999999999999999999999999 99998 789
Q ss_pred HHHHHHHHHhCCeecc-----cCCCCCCCCCcceeeEEEEEEcceEEEEEeecCC-------------------------
Q 013893 321 FELRRFCRTTGAVAML-----KLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGG------------------------- 370 (434)
Q Consensus 321 ~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~------------------------- 370 (434)
++|+|||++|||++++ ++++++++++|+|+.|++.+ +++++|.+|+.
T Consensus 287 ~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~ 363 (544)
T PRK12850 287 AMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITK---ENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDRE 363 (544)
T ss_pred HHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEe---eeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 9999999999999999 68888888999999998875 78899988863
Q ss_pred ---------CCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcCCeEEeCCCHHHHHHHHHHHHhhhcCC
Q 013893 371 ---------GNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKET 433 (434)
Q Consensus 371 ---------~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGgG~~E~~l~~~L~~~a~~~~ 433 (434)
+++.+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|++++.+|+++ .+.+
T Consensus 364 ~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~-~~~~ 433 (544)
T PRK12850 364 KLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRARSALRGL-KGAN 433 (544)
T ss_pred HHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHhc-cCCC
Confidence 12489999999999999999999999999999999997 9999999999999999987 4444
No 36
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.9e-67 Score=546.80 Aligned_cols=359 Identities=19% Similarity=0.297 Sum_probs=322.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccc----cChHHHHHHHHHHhhhhhhCCCc
Q 013893 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEV----QHPAAKLLVLAGKAQQEEIGDGA 100 (434)
Q Consensus 25 ~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~----~hP~a~ll~~~~~~~~~~~GDGt 100 (434)
+++++.|+.++..++++++|||||+||+|||+++.|+++|||||+||++++++ +||+|+|+++++++|++++||||
T Consensus 10 ~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~~q~~e~GDGT 89 (545)
T PRK12852 10 GDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDLAGDGT 89 (545)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHhhcCceecCCc
Confidence 58999999999999999999999999999999999999999999999999999 59999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhcccccCchhhH
Q 013893 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (434)
Q Consensus 101 ts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (434)
||+++||++||+++.+|+++|+||..|++||+.|++.+++.|+++++|. + +.+++.++++++.++ ++.+
T Consensus 90 TtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v----~--~~~~l~~va~~s~~~-----~~~l 158 (545)
T PRK12852 90 TTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPV----A--SSAEIAQVGTISANG-----DAAI 158 (545)
T ss_pred chHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccC----C--CHHHHHHHHhhhcCC-----hHHH
Confidence 9999999999999999999999999999999999999999999998873 2 356699999887765 5889
Q ss_pred HHHHHHHHHHhCCCCCCCccccceEEEEcCCCCc-ccceeeeeEEEeecCC---------CCcceeecceEEEEeeeccc
Q 013893 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGL-HNSTIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDT 250 (434)
Q Consensus 181 s~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~-~dS~~i~G~v~~~~~~---------~~~~~~~n~kIlll~~~l~~ 250 (434)
++++++|+..+++++ . |.+. .|+.. .+|++++|+.|++++. .|+..++||+|+++++.+
T Consensus 159 ~~li~eA~~~vg~~g--~-----i~v~--~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i-- 227 (545)
T PRK12852 159 GKMIAQAMQKVGNEG--V-----ITVE--ENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKL-- 227 (545)
T ss_pred HHHHHHHHHHhccCC--c-----eeee--cCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCcc--
Confidence 999999999998643 2 3333 27765 7899999999998763 378889999999998754
Q ss_pred cccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHC------CeEEEEeCC-----
Q 013893 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERY------KLMVLKISS----- 319 (434)
Q Consensus 251 ~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~------~I~~v~~v~----- 319 (434)
++++ .+.++++.+.+.+++|||++++|++.++++|..+ +|++|++++
T Consensus 228 -----------~~~~-----------~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r 285 (545)
T PRK12852 228 -----------SGLQ-----------AMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRR 285 (545)
T ss_pred -----------CCHH-----------HHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccch
Confidence 3443 3445788999999999999999999999999876 799999877
Q ss_pred HHHHHHHHHHhCCeecc-----cCCCCCCCCCcceeeEEEEEEcceEEEEEeecCCC-----------------------
Q 013893 320 KFELRRFCRTTGAVAML-----KLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGG----------------------- 371 (434)
Q Consensus 320 ~~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~----------------------- 371 (434)
+++|+|||.+|||++++ ++++++++++|+|+.|++.+ ++++++.++...
T Consensus 286 ~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~ 362 (545)
T PRK12852 286 KAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDK---ENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDR 362 (545)
T ss_pred HhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEc---cEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHH
Confidence 89999999999999999 68888888999999999886 678888887521
Q ss_pred -----------CceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcCCeEEeCCCHHHHHHHHHHHHhhhc
Q 013893 372 -----------NSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFK 431 (434)
Q Consensus 372 -----------~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGgG~~E~~l~~~L~~~a~~ 431 (434)
++.+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|++++.+|++++.+
T Consensus 363 ~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g-~VpGGGa~e~~~s~~L~~~~~~ 432 (545)
T PRK12852 363 EKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEG-IVPGGGVALLRAKKAVGRINND 432 (545)
T ss_pred HHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCchHHHHHHHHHHHHhhcC
Confidence 3789999999999999999999999999999999998 9999999999999999988754
No 37
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=2.2e-66 Score=538.52 Aligned_cols=364 Identities=19% Similarity=0.262 Sum_probs=317.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHH----HHHHHHHhhhhhhCCCc
Q 013893 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAK----LLVLAGKAQQEEIGDGA 100 (434)
Q Consensus 25 ~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~----ll~~~~~~~~~~~GDGt 100 (434)
+++++..+++|..++++++|||||+||+|||+++.|+++|||||+|||++++++||+++ |+++++++|++++||||
T Consensus 9 ~~~~~~~~~g~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~~~~~e~GDGT 88 (529)
T CHL00093 9 DNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDVAGDGT 88 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHHhcCceecCCC
Confidence 58999999999999999999999999999999999999999999999999999999995 88889999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhcccccCchhhH
Q 013893 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (434)
Q Consensus 101 ts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (434)
||+++|+++||++|.+++++|+||..|++||+.|.+.+++.|+++++|. + +.+.|.++++++++ +++.|
T Consensus 89 TtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v----~--d~~~L~~VA~ts~~-----~~~~l 157 (529)
T CHL00093 89 TTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPV----E--DIQAITQVASISAG-----NDEEV 157 (529)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCC----C--CHHHHHHHHHHhcc-----ChHHH
Confidence 9999999999999999999999999999999999999999999998763 2 67889999998876 47899
Q ss_pred HHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccceeeeeEEEeecCC---------CCcceeecceEEEEeeecccc
Q 013893 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDTS 251 (434)
Q Consensus 181 s~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~---------~~~~~~~n~kIlll~~~l~~~ 251 (434)
++|+++|+..+++++ .++ +.. .++..+++++++|++|++++. .|+..++||+|++++++|++.
T Consensus 158 ~~lv~eAv~~vg~~g--~i~-----~~~-g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~ 229 (529)
T CHL00093 158 GSMIADAIEKVGREG--VIS-----LEE-GKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLV 229 (529)
T ss_pred HHHHHHHHHHhccCC--cee-----ecC-CCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCCCch
Confidence 999999999997643 233 221 233456789999999998763 233358999999999999743
Q ss_pred ccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHH--HH----CCeEEEEeCC-----H
Q 013893 252 ATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFC--ER----YKLMVLKISS-----K 320 (434)
Q Consensus 252 ~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l--~~----~~I~~v~~v~-----~ 320 (434)
+ ..+.++++.+.+.+++++|++++|++.++.+| ++ ++|++|++++ +
T Consensus 230 ~-----------------------~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k 286 (529)
T CHL00093 230 Q-----------------------QDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRK 286 (529)
T ss_pred H-----------------------HHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchH
Confidence 2 12456788999999999999999999777755 76 5999999994 4
Q ss_pred HHHHHHHHHhCCeecc-----cCCCCCCCCCcceeeEEEEEEcceEEEEEee---------cCC----------------
Q 013893 321 FELRRFCRTTGAVAML-----KLCQPNPDDLGYVDSVSVEEIGGARVTIVRN---------EGG---------------- 370 (434)
Q Consensus 321 ~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~---------~~~---------------- 370 (434)
++|+|||.+|||++++ +++++++.++|+|+.|++.+ +++++|++ |+.
T Consensus 287 ~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 363 (529)
T CHL00093 287 AMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTK---DSTTIIADGNEEQVKARCEQLRKQIEIADSSYEKEK 363 (529)
T ss_pred HHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEec---CEEEEEecCcHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence 8899999999999999 68899989999999999875 67888874 221
Q ss_pred --------CCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcCCeEEeCCCHHHHHHHHHHHHhhh-cCCC
Q 013893 371 --------GNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSF-KETG 434 (434)
Q Consensus 371 --------~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGgG~~E~~l~~~L~~~a~-~~~g 434 (434)
++..+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+++|.+|++++. +++|
T Consensus 364 l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~g 435 (529)
T CHL00093 364 LQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEG-IVPGGGATLVHLSENLKTWAKNNLKE 435 (529)
T ss_pred HHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCcHHHHHHHHHHHHHhccCCCh
Confidence 11478899999999999999999999999999999998 999999999999999999976 5654
No 38
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=4.1e-66 Score=539.52 Aligned_cols=363 Identities=21% Similarity=0.303 Sum_probs=322.6
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChH----HHHHHHHHHhhhhhhCCCch
Q 013893 26 EAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPA----AKLLVLAGKAQQEEIGDGAN 101 (434)
Q Consensus 26 ~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~----a~ll~~~~~~~~~~~GDGtt 101 (434)
++++..+.+|..+++++++||||+||+|||+++.|+++|||||+||+++++++||+ |+|+++++++|++++|||||
T Consensus 66 ~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~evGDGTT 145 (600)
T PLN03167 66 SAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTT 145 (600)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHHHHHhhhhhhCCCcc
Confidence 79999999999999999999999999999999999999999999999999999995 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhcccccCchhhHH
Q 013893 102 LTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEILC 181 (434)
Q Consensus 102 s~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~ls 181 (434)
|+++|+++||+++.++++.|+||..|++||+.|.+.+++.|++++.+. + + +.|.+++.+++++ ++.|+
T Consensus 146 TvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v----~--d-~~L~~vA~tS~~~-----~~~i~ 213 (600)
T PLN03167 146 TSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEV----E--D-SELADVAAVSAGN-----NYEVG 213 (600)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccC----C--H-HHHHHHHHHhccC-----cHHHH
Confidence 999999999999999999999999999999999999999999998763 2 3 5699999998864 57899
Q ss_pred HHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccc-eeeeeEEEeecCC---------CCcceeecceEEEEeeecccc
Q 013893 182 PLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNS-TIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDTS 251 (434)
Q Consensus 182 ~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS-~~i~G~v~~~~~~---------~~~~~~~n~kIlll~~~l~~~ 251 (434)
+|+++|+..+++++ . |.+ ..|++.+|+ ++++|++|++++. +|+++++||+|+++++.
T Consensus 214 ~liaeAv~~Vg~~g--~-----i~v--~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~---- 280 (600)
T PLN03167 214 NMIAEAMSKVGRKG--V-----VTL--EEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKK---- 280 (600)
T ss_pred HHHHHHHHHhccCC--c-----EEe--ccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccc----
Confidence 99999999997643 1 222 268899987 9999999999863 58899999999999975
Q ss_pred ccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHH------HCCeEEEEeCC-----H
Q 013893 252 ATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCE------RYKLMVLKISS-----K 320 (434)
Q Consensus 252 ~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~------~~~I~~v~~v~-----~ 320 (434)
+++++++.+++ +.+.+.++++|+++++|++.++++|. ..+|++|++++ +
T Consensus 281 ---------i~~~~~l~~~l-----------e~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~ 340 (600)
T PLN03167 281 ---------ITNARDLIGIL-----------EDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKS 340 (600)
T ss_pred ---------cCCHHHHHHHH-----------HHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchH
Confidence 45677777654 46777899999999999999999998 67899999996 8
Q ss_pred HHHHHHHHHhCCeecc-----cCCCCCCCCCcceeeEEEEE-----Ecc--------eEEEEEeecCC------------
Q 013893 321 FELRRFCRTTGAVAML-----KLCQPNPDDLGYVDSVSVEE-----IGG--------ARVTIVRNEGG------------ 370 (434)
Q Consensus 321 ~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~-----ig~--------~~~~~~~~~~~------------ 370 (434)
++|+|||.+|||++++ ++++++++++|+|+.|++.+ +|+ +++.+|+++..
T Consensus 341 ~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~ 420 (600)
T PLN03167 341 QYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLN 420 (600)
T ss_pred HHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHH
Confidence 8999999999999999 68888888999999999987 765 36777776530
Q ss_pred -----CCceEEEE-EecCCHhHHHHHHHHHHHHHHHHHHhhcCCeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013893 371 -----GNSVSTVV-LRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 371 -----~~~~~TIl-lrG~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
-+.++|++ +||+|+.+++|.+|+++||++++++++++| +|||||++|++++.+|++++.+++|
T Consensus 421 ~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~g-vVpGGGa~el~ls~~L~~~~~~~~~ 489 (600)
T PLN03167 421 ERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLASKVDAIKDTLEN 489 (600)
T ss_pred HHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHhcCCC
Confidence 02345665 999999999999999999999999999999 9999999999999999998876553
No 39
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=2.3e-65 Score=531.04 Aligned_cols=357 Identities=20% Similarity=0.302 Sum_probs=318.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhcccc----ChHHHHHHHHHHhhhhhhCCCc
Q 013893 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQ----HPAAKLLVLAGKAQQEEIGDGA 100 (434)
Q Consensus 25 ~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~----hP~a~ll~~~~~~~~~~~GDGt 100 (434)
+++++.|++|+..++++++|||||+||+|||+++.|+++|||||+||+++++++ ||+++|+++++++|++++||||
T Consensus 10 ~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~qd~e~GDGT 89 (546)
T PRK14104 10 VDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSADAAGDGT 89 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHhhcccccCcc
Confidence 589999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhcccccCchhhH
Q 013893 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (434)
Q Consensus 101 ts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (434)
||+++||++||+++.+++++|+||..|++||+.|.+.+++.|+++++|. + +.+++.++++++.+++ +.+
T Consensus 90 TTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v----~--~~~~l~~va~~s~~~d-----~~i 158 (546)
T PRK14104 90 TTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKV----T--SNDEIAQVGTISANGD-----AEI 158 (546)
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccC----C--CHHHHHHHHHHHhcCc-----hHH
Confidence 9999999999999999999999999999999999999999999999873 2 3467899999887753 779
Q ss_pred HHHHHHHHHHhCCCCCCCccccceEEEEcCCCCc-ccceeeeeEEEeecCC---------CCcceeecceEEEEeeeccc
Q 013893 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGL-HNSTIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDT 250 (434)
Q Consensus 181 s~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~-~dS~~i~G~v~~~~~~---------~~~~~~~n~kIlll~~~l~~ 250 (434)
++++++|+..+++++ . |.+.. ++.. +++++++|++|++++. .++..++||+|++++..
T Consensus 159 ~~lv~~Av~~vg~~g--~-----i~v~~--~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~--- 226 (546)
T PRK14104 159 GKFLADAMKKVGNEG--V-----ITVEE--AKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKK--- 226 (546)
T ss_pred HHHHHHHHHHhccCC--c-----eeeEe--cccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhh---
Confidence 999999999997643 2 44443 2345 5899999999998873 24677889999999843
Q ss_pred cccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHH------CCeEEEEeCC-----
Q 013893 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCER------YKLMVLKISS----- 319 (434)
Q Consensus 251 ~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~------~~I~~v~~v~----- 319 (434)
++++++ +.++++.+.+.+++|||++++|++.|+++|.. .+|++|++++
T Consensus 227 ----------i~~~~~-----------i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r 285 (546)
T PRK14104 227 ----------LSSLNE-----------LLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRR 285 (546)
T ss_pred ----------hcCHHH-----------HHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcch
Confidence 344444 34678899999999999999999999999985 5789999887
Q ss_pred HHHHHHHHHHhCCeeccc-----CCCCCCCCCcceeeEEEEEEcceEEEEEeecCCC-----------------------
Q 013893 320 KFELRRFCRTTGAVAMLK-----LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGG----------------------- 371 (434)
Q Consensus 320 ~~~L~~ia~~tGa~ii~~-----~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~----------------------- 371 (434)
+++|+|||.+|||+++++ +++++++++|+|+.+++ ++++++++.+|+..
T Consensus 286 ~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~ 362 (546)
T PRK14104 286 KAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMI---DKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDR 362 (546)
T ss_pred HHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEE---cCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 799999999999999999 88888899999999875 56788999888631
Q ss_pred -----------CceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcCCeEEeCCCHHHHHHHHHHHHhh
Q 013893 372 -----------NSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFS 429 (434)
Q Consensus 372 -----------~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGgG~~E~~l~~~L~~~a 429 (434)
++.+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|++++.+|+++.
T Consensus 363 ~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g-~VpGGGa~e~~~s~~L~~~~ 430 (546)
T PRK14104 363 EKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEG-IVPGGGVALLRASEQLKGIK 430 (546)
T ss_pred HHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cCcCchHHHHHHHHHHHHhh
Confidence 2899999999999999999999999999999999998 99999999999999999874
No 40
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-66 Score=494.70 Aligned_cols=401 Identities=23% Similarity=0.408 Sum_probs=381.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHHhhhhhhCCCchHHH
Q 013893 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTI 104 (434)
Q Consensus 25 ~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtts~v 104 (434)
..+..-|+.++..+.+++++.+||.|..||++++.|++.+|.||.+.+.+|+++||-+-++..++-+|++..|||||++|
T Consensus 16 ~aal~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPTa~lIakaatAqdd~tGDGttS~V 95 (520)
T KOG0359|consen 16 QAALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPTASLIAKVATAQDDITGDGTTSVV 95 (520)
T ss_pred hcceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCchHHHHHHHHHHhhcccCCCcceEE
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhccccc-CchhhHHHH
Q 013893 105 SFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQF-GQEEILCPL 183 (434)
Q Consensus 105 lLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~-~~~~~ls~L 183 (434)
+|.++++++|..++..|+||..|.+||+.|.+.++++|+....+ .+++.|..+++|++++|.. ...+.++++
T Consensus 96 lligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~-------~~~~~L~~va~tsl~Tkv~~~la~~lt~~ 168 (520)
T KOG0359|consen 96 LLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSRE-------VDRETLKDVARTSLRTKVHAELADVLTPI 168 (520)
T ss_pred EeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccc-------hhHHHHHHHHHHhhcCcccHHHHhHhHHH
Confidence 99999999999999999999999999999999999999965544 4689999999999999965 678999999
Q ss_pred HHHHHHHhCCCCCCCccccceEEEEcCCCCcccceeeeeEEEeecCC--CCcceeecceEEEEeeeccccccccceEEEe
Q 013893 184 IADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTSATETKGTVLI 261 (434)
Q Consensus 184 v~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~--~~~~~~~n~kIlll~~~l~~~~~~~~~~v~i 261 (434)
+++|+..+.+ ....+|+.++.|.++.-.+..|+.+++|++++++.. .||++++|+.|+++|.+|||++++.++.+.+
T Consensus 169 vv~aVl~i~~-~~~~idl~mveim~mq~~s~~dT~~v~glvLdhg~rHpdmp~~~e~a~iL~~NvSLEYEK~EinsgffY 247 (520)
T KOG0359|consen 169 VVDSVLCIRR-QEEPIDLFMVEIMEMQHKSLHDTSLVQGLVLDHGARHPDMPRRVEDAYILICNVSLEYEKPEINSGFFY 247 (520)
T ss_pred HHhhheeecc-CCCCcchhHHHhhhhccCchhhhHHhhhhhccCCCCCcccccchhceEEEEeeccccccccccccchhc
Confidence 9999999873 334689999999999989999999999999999874 5999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHcCCe----EEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCeeccc
Q 013893 262 HNAEQLENYAKTEEAKVEGLIKAVAESGAE----VIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLK 337 (434)
Q Consensus 262 ~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~----lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~ 337 (434)
++++|.+.+...|++++.+.+++|++++-. ||+.|++|||..++.|+++||+++||.++..|||+..+||+..+++
T Consensus 248 sta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gIlaLRRAKRRNmERL~lacGG~a~ns 327 (520)
T KOG0359|consen 248 STAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGILALRRAKRRNMERLVLACGGEAVNS 327 (520)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcchHHHHHHhhhhHHHHHHhhccceecc
Confidence 999999999999999999999999987643 7889999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcceeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcCCeEEeCCCHH
Q 013893 338 LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAAT 417 (434)
Q Consensus 338 ~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGgG~~ 417 (434)
+++++++.+|+|+.|.++++|+++|+|+++|+. ++.|||+++||+++.+.++|.+++|++++++++++++.++||||++
T Consensus 328 vddLtp~~LG~aglVye~tlGEEkfTFIE~~~~-p~S~TiLikgpnkht~tQikdairdglrav~ntl~d~~~i~Gaga~ 406 (520)
T KOG0359|consen 328 VDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNN-PSSVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAF 406 (520)
T ss_pred cccCChhhccccceeEEeeccceeeEeeecCCC-CcceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccCchHH
Confidence 999999999999999999999999999999985 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCC
Q 013893 418 EIELARRLKEFSFKETG 434 (434)
Q Consensus 418 E~~l~~~L~~~a~~~~g 434 (434)
|..++++|+...++++|
T Consensus 407 ~va~~~~lr~~k~~vkg 423 (520)
T KOG0359|consen 407 EVALGRHLRESKKSVKG 423 (520)
T ss_pred HHHHHHHHHHhhhccCc
Confidence 99999999988777775
No 41
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-48 Score=360.88 Aligned_cols=278 Identities=29% Similarity=0.476 Sum_probs=261.8
Q ss_pred ccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHHhhhhhhCC
Q 013893 19 KHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGD 98 (434)
Q Consensus 19 ~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GD 98 (434)
....| -++.+.|+-+.++++.+++||+||+|++|+++.+.|++.+|||| .|++++++...+..|+.++||
T Consensus 22 ~Ri~G-~ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndg---------d~~IakLmv~LS~sqd~eIgd 91 (400)
T KOG0357|consen 22 DRLFG-LDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDG---------VHQIAKLIVILSKSQDDEIGD 91 (400)
T ss_pred chhhH-HHHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeecc---------chHHHHHHHHhcccchhhhcc
Confidence 33445 59999999999999999999999999999999999999999999 789999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhcccccCchh
Q 013893 99 GANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEE 178 (434)
Q Consensus 99 Gtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~ 178 (434)
|||.+++|++.+++++.+++.+|+||..|.+||..+.+.+.+.|++++.+. +
T Consensus 92 GtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~-------e--------------------- 143 (400)
T KOG0357|consen 92 GTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPF-------E--------------------- 143 (400)
T ss_pred CCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhcccc-------c---------------------
Confidence 999999999999999999999999999999999999999988887764330 0
Q ss_pred hHHHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccceeeeeEEEeecCCCCcceeecceEEEEeeeccccccccceE
Q 013893 179 ILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGT 258 (434)
Q Consensus 179 ~ls~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~~~~~~~~n~kIlll~~~l~~~~~~~~~~ 258 (434)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCeecccC
Q 013893 259 VLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKL 338 (434)
Q Consensus 259 v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~~ 338 (434)
++++++.+++.|+++++|||++||.|-++|.+++..+||||.-.++|-||.+||++|++++
T Consensus 144 -------------------f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lpavrwVGGpEiEliAiaT~grIVprF 204 (400)
T KOG0357|consen 144 -------------------FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRF 204 (400)
T ss_pred -------------------HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCCceeecCCcceEEEEeecCCeeeccH
Confidence 2356789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcceeeEEEEEEc--ceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcCCeEEeCCCH
Q 013893 339 CQPNPDDLGYVDSVSVEEIG--GARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAA 416 (434)
Q Consensus 339 ~~l~~~~lG~~~~v~~~~ig--~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGgG~ 416 (434)
++++++++|+|+.|++..+| .+++.++++|++ ++.+||.+||+++-+++|.||++|||||+++++++|.++|+|||+
T Consensus 205 ~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~n-skaVTifvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGa 283 (400)
T KOG0357|consen 205 SELTAEKLGFAGLVREISFGTTKDKMLVIEQCKN-SKAVTIFVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGA 283 (400)
T ss_pred hhhCHhhccccceEEEEecccccceEEEEEecCC-CceEEEEEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCch
Confidence 99999999999999999998 468999999985 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCC
Q 013893 417 TEIELARRLKEFSFKETG 434 (434)
Q Consensus 417 ~E~~l~~~L~~~a~~~~g 434 (434)
.|+.||-.+.+-|.++||
T Consensus 284 aEiscslav~~ead~~~g 301 (400)
T KOG0357|consen 284 AEISCALAVSQEADKIPG 301 (400)
T ss_pred HHhhhhhHhhHhhccCCc
Confidence 999999999999998887
No 42
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=100.00 E-value=8.5e-44 Score=337.80 Aligned_cols=229 Identities=18% Similarity=0.252 Sum_probs=211.9
Q ss_pred CchhhHHHHHHHHHHHhCCCC--CCCcccc-ceEEEEcCCCCcccceeeeeEEEeecCC--CCcceeecceEEEEeeecc
Q 013893 175 GQEEILCPLIADACIQVCPKN--PANFNVD-NVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVD 249 (434)
Q Consensus 175 ~~~~~ls~Lv~~ai~~v~~~~--~~~~~~~-~I~i~~i~Gg~~~dS~~i~G~v~~~~~~--~~~~~~~n~kIlll~~~l~ 249 (434)
.|.++|++++++|+..+.+.. .+.+|++ +|+|++++||+++||++++|+++++.+. +||+.++||||++++++|+
T Consensus 18 ~~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~~~m~~~i~n~kIlll~~~Le 97 (261)
T cd03334 18 SWLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHKRMPSKIKNPRILLLQGPLE 97 (261)
T ss_pred HHHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCCccCCcccCCCcEEEEeeeec
Confidence 578999999999999997542 2468886 6999999999999999999999999874 6999999999999999999
Q ss_pred ccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHH
Q 013893 250 TSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRT 329 (434)
Q Consensus 250 ~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia~~ 329 (434)
+++++. ++++++.++++|++++++++++|.+.|+||||++++|++.+++||.++||++++++++++|+|||++
T Consensus 98 ~~~~~~-------~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~~v~~~dl~rIa~~ 170 (261)
T cd03334 98 YQRVEN-------KLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVLNVKPSVLERISRC 170 (261)
T ss_pred cccccC-------CHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEEecCHHHHHHHHHH
Confidence 998863 5788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeecccC-CCCCCCCCcceeeEEEEEEcc-----eEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHH
Q 013893 330 TGAVAMLKL-CQPNPDDLGYVDSVSVEEIGG-----ARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKA 403 (434)
Q Consensus 330 tGa~ii~~~-~~l~~~~lG~~~~v~~~~ig~-----~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~ 403 (434)
|||++++++ +.++++.+|+|+.|+++++|+ ++|++|++|+. ++++||+|||+|+++++|++|+++||++++++
T Consensus 171 tGa~ii~~i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~-~~~~TIlLRG~t~~~lde~eR~i~Dal~v~~~ 249 (261)
T cd03334 171 TGADIISSMDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPK-ELGCTILLRGGDLEELKKVKRVVEFMVFAAYH 249 (261)
T ss_pred hCCEEecChhhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCC-CceeEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999994 588999999999999999996 69999999984 88999999999999999999999999999999
Q ss_pred hhcCCeEE
Q 013893 404 MCRDSRIV 411 (434)
Q Consensus 404 ~~~~~~vv 411 (434)
+..+..++
T Consensus 250 ~~le~~~~ 257 (261)
T cd03334 250 LKLETSFL 257 (261)
T ss_pred HHHhHHHH
Confidence 99887543
No 43
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=100.00 E-value=1.7e-38 Score=293.47 Aligned_cols=206 Identities=27% Similarity=0.462 Sum_probs=193.8
Q ss_pred HHHHHHHHHhhcccccCchhhHHHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccceeeeeEEEeecCC--CCccee
Q 013893 159 EEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNM 236 (434)
Q Consensus 159 ~~l~~i~~t~l~sk~~~~~~~ls~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~--~~~~~~ 236 (434)
+.|.++++|+++||+..|.+++++++++|+..+++++. .++.++|+|++++||+++||++++|++|++++. .||+.+
T Consensus 2 ~~l~~ia~ts~~sk~~~~~~~l~~l~~~Av~~v~~~~~-~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m~~~~ 80 (209)
T cd03333 2 ELLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNR-MDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYMPKRL 80 (209)
T ss_pred hHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccCC-CCchHHEEEEEecCcChhhceeEeeEEEeccccCCCCCeEc
Confidence 46889999999999966899999999999999987543 577789999999999999999999999999874 589999
Q ss_pred ecceEEEEeeeccccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEE
Q 013893 237 EKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLK 316 (434)
Q Consensus 237 ~n~kIlll~~~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~ 316 (434)
+||||++++++|++ ||+++++|++.+++||.++||++++
T Consensus 81 ~n~~Ill~~~~le~-----------------------------------------vii~~~~I~~~al~~l~~~~I~~v~ 119 (209)
T cd03333 81 ENAKILLLDCPLEY-----------------------------------------VVIAEKGIDDLALHYLAKAGIMAVR 119 (209)
T ss_pred CCCcEEEEeCCeeE-----------------------------------------EEEecCcccHHHHHHHHHCCCEEEE
Confidence 99999999999986 9999999999999999999999999
Q ss_pred eCCHHHHHHHHHHhCCeecccCCCCCCCCCcceeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHH
Q 013893 317 ISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDD 396 (434)
Q Consensus 317 ~v~~~~L~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~d 396 (434)
++++++|+|||++|||++++++++++++.+|+|+.|++.++|++++++|++|+. +++|||+|||+|+.+++|.||+++|
T Consensus 120 ~~~~~~l~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~-~~~~tIllrG~t~~~l~e~kr~l~d 198 (209)
T cd03333 120 RVKKEDLERIARATGATIVSSLEDLTPEDLGTAELVEETKIGEEKLTFIEGCKG-GKAATILLRGATEVELDEVKRSLHD 198 (209)
T ss_pred eCCHHHHHHHHHHHCCEEecccccCChhhceeeeEEEEEEECCeEEEEEEcCCC-CCEEEEEEECCCHhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999974 8999999999999999999999999
Q ss_pred HHHHHHHhhcC
Q 013893 397 GVNTYKAMCRD 407 (434)
Q Consensus 397 al~~~~~~~~~ 407 (434)
|++++++++++
T Consensus 199 al~~~~~~~~~ 209 (209)
T cd03333 199 ALCAVRAAVEE 209 (209)
T ss_pred HHHHHHHHhhC
Confidence 99999999864
No 44
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-38 Score=308.35 Aligned_cols=360 Identities=21% Similarity=0.304 Sum_probs=302.9
Q ss_pred ccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChH----HHHHHHHHHhhhhhh
Q 013893 21 MSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPA----AKLLVLAGKAQQEEI 96 (434)
Q Consensus 21 ~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~----a~ll~~~~~~~~~~~ 96 (434)
..| .+++...++++..||+++..|+||+||+++|....|.|.|||||.|+.+++++.++. |+++.+.+...++..
T Consensus 20 ~fg-~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~gaklvq~va~~tN~~a 98 (550)
T KOG0356|consen 20 KFG-KDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIGAKLVQDVANNTNEEA 98 (550)
T ss_pred ccC-HHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhccHHHHHHHhhccCcc
Confidence 345 589999999999999999999999999999999999999999999999999998886 999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhcccccCc
Q 013893 97 GDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQ 176 (434)
Q Consensus 97 GDGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~ 176 (434)
|||||++++|++++..++.+-+.+|.+|..|.+|...+.+.+.+.|++++.|+ ...+.+.+++..+.++
T Consensus 99 gdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~V------tt~eeIaqVAtiSAng----- 167 (550)
T KOG0356|consen 99 GDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPV------TTPEEIAQVATISANG----- 167 (550)
T ss_pred ccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCC------CCHHHHHHHHhhhcCC-----
Confidence 99999999999999999999999999999999999999999999999999874 3578899999877665
Q ss_pred hhhHHHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccc-eeeeeEEEeecCC---------CCcceeecceEEEEee
Q 013893 177 EEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNS-TIVRGMVLKSDAV---------GSIKNMEKAKVAVFAG 246 (434)
Q Consensus 177 ~~~ls~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS-~~i~G~v~~~~~~---------~~~~~~~n~kIlll~~ 246 (434)
+....+++.+|+.++++++ -|.++ .|....|. ++++||-|++++. .+..+++||++++.+-
T Consensus 168 D~~ig~li~~a~~kvG~~G-------VItv~--~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~k 238 (550)
T KOG0356|consen 168 DKEIGNLISDAMKKVGRKG-------VITVK--DGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEK 238 (550)
T ss_pred cHHHHHHHHHHHHHhCcCC-------eEEee--cCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhh
Confidence 5778889999999998875 24444 36666654 9999999999873 2445677888887654
Q ss_pred eccccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCC------eEEEEeCC-
Q 013893 247 GVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYK------LMVLKISS- 319 (434)
Q Consensus 247 ~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~------I~~v~~v~- 319 (434)
. ++++.++.+.+ +.-.+...+++++..+|+.+++..|.-++ +++++.+.
T Consensus 239 k-------------i~~v~~ivp~L-----------E~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgf 294 (550)
T KOG0356|consen 239 K-------------ISSVQSIVPAL-----------ELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGF 294 (550)
T ss_pred h-------------hhHHHHHhHHH-----------HHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCC
Confidence 3 45666666543 34445667899999999999999887553 56777764
Q ss_pred ----HHHHHHHHHHhCCeeccc------CCCCCCCCCcceeeEEEEEEcceEEEEEeecC--------------------
Q 013893 320 ----KFELRRFCRTTGAVAMLK------LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEG-------------------- 369 (434)
Q Consensus 320 ----~~~L~~ia~~tGa~ii~~------~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~-------------------- 369 (434)
+..+.+++-+||+.++.. ++.....++|.|..+.+.. +....+.+-.
T Consensus 295 Gdnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtk---d~t~ll~g~~~~~~v~~rIeqik~~~e~t~ 371 (550)
T KOG0356|consen 295 GDNRKNLLKDIAILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTK---DDTMLLKGKGNKAQVEGRIEQIKEMIEETT 371 (550)
T ss_pred cchHHHhhhHHHHHhhhhhhccchhhcccccCchhhcCcceeEEEec---CcceeeCCCCCHHHHHHHHHHHHHHHHhhh
Confidence 556999999999999875 4455678899999987764 2222333210
Q ss_pred --------------CCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcCCeEEeCCCHHHHHHHHHHHHhh
Q 013893 370 --------------GGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFS 429 (434)
Q Consensus 370 --------------~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGgG~~E~~l~~~L~~~a 429 (434)
.+..+++|.+.|.++.+++|.+.++.||++++++++++| +|||||++.++|+..|.+..
T Consensus 372 ~~ye~ekl~er~a~ls~gvavi~vGg~se~Ev~ekk~rv~dalnat~aaveeG-ivpGGG~all~~~~~l~~lk 444 (550)
T KOG0356|consen 372 SDYEKEKLNERLAKLSGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEG-IVPGGGTALLRAIPVLDELK 444 (550)
T ss_pred hhhhHhHHHHHHHHhcCCeEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcC-cccCCchHHHHhhhhhhhcc
Confidence 146789999999999999999999999999999999999 99999999999999997764
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=99.94 E-value=1.7e-26 Score=248.38 Aligned_cols=234 Identities=16% Similarity=0.228 Sum_probs=209.5
Q ss_pred CchhhHHHHHHHHHHHhCCCC--CCCccc-cceEEEEcCCCCcccceeeeeEEEeecCC--CCcceeecceEEEEeeecc
Q 013893 175 GQEEILCPLIADACIQVCPKN--PANFNV-DNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVD 249 (434)
Q Consensus 175 ~~~~~ls~Lv~~ai~~v~~~~--~~~~~~-~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~--~~~~~~~n~kIlll~~~l~ 249 (434)
.|.+.+..|+++|+..+.|+. .+.+|+ ++|+|++++||...||+++.|+++.+.+. .|..++++|||+++.++|+
T Consensus 332 ~W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k~M~~~~e~prilll~g~le 411 (1598)
T KOG0230|consen 332 EWLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHKRMATKYENPRILLLGGPLE 411 (1598)
T ss_pred hHHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccceeeeEEEeecchhhhhhhhhccCCceEEEecchh
Confidence 478889999999999998852 235666 69999999999999999999999999874 6999999999999999999
Q ss_pred ccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHH
Q 013893 250 TSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRT 329 (434)
Q Consensus 250 ~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia~~ 329 (434)
|++... ....++..+++|+++++..|.+|...++|+++++++|++.|+++|...+|.++-++++..|+||+++
T Consensus 412 yqrisn-------~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~I~lvlnvK~s~leRIsR~ 484 (1598)
T KOG0230|consen 412 YQRISN-------QLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKGISLVLNVKRSLLERISRC 484 (1598)
T ss_pred hhhhhc-------cccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccCeEEEEeccHHHHHHHHHH
Confidence 987542 1345677788899999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeecccCCCCCCCCCcceeeEEEEEEc-----ceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHh
Q 013893 330 TGAVAMLKLCQPNPDDLGYVDSVSVEEIG-----GARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAM 404 (434)
Q Consensus 330 tGa~ii~~~~~l~~~~lG~~~~v~~~~ig-----~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~ 404 (434)
|||.|+++++.++...+|+|+.|+++++- .++++||++|+. +.+|||+|||....++.+.|+.++-++.+++++
T Consensus 485 tga~I~~siDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~-~lG~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l 563 (1598)
T KOG0230|consen 485 TGADIVPSVDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPK-PLGCTILLRGDSLEELKKVKHVVQYLVFAAYHL 563 (1598)
T ss_pred hcCceecchhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCC-CCCceEEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998875 468899999985 899999999999999999999999999999999
Q ss_pred hcCCeEEeCCCH
Q 013893 405 CRDSRIVPGAAA 416 (434)
Q Consensus 405 ~~~~~vvpGgG~ 416 (434)
.-+..++.--|+
T Consensus 564 ~LE~SflaDe~a 575 (1598)
T KOG0230|consen 564 ALETSFLADEGA 575 (1598)
T ss_pred HHhhhhhhccCC
Confidence 766555544443
No 46
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=76.57 E-value=10 Score=31.65 Aligned_cols=51 Identities=10% Similarity=0.132 Sum_probs=39.8
Q ss_pred HHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCC
Q 013893 281 LIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGA 332 (434)
Q Consensus 281 ~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia~~tGa 332 (434)
..+.|++.|+++|+++ .+.+-+..+|..+||-++.-.+...=+.|-....+
T Consensus 57 ~a~~l~~~gvdvvi~~-~iG~~a~~~l~~~GIkv~~~~~~~V~e~i~~~~~g 107 (121)
T COG1433 57 IAELLVDEGVDVVIAS-NIGPNAYNALKAAGIKVYVAPGGTVEEAIKAFLEG 107 (121)
T ss_pred HHHHHHHcCCCEEEEC-ccCHHHHHHHHHcCcEEEecCCCCHHHHHHHHhcC
Confidence 4567889999999998 89999999999999999988774444444444443
No 47
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=73.67 E-value=16 Score=28.26 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCeEEEeCCCcCHHHHH----HHHHCCeEEEEeCCHHHHHHHHH
Q 013893 279 EGLIKAVAESGAEVIVSGAAVGEMALH----FCERYKLMVLKISSKFELRRFCR 328 (434)
Q Consensus 279 ~~~v~~i~~~~~~lvl~~~~I~~~al~----~l~~~~I~~v~~v~~~~L~~ia~ 328 (434)
++.++.|.+-.+.+|+..+++++.... +|.++||.++--.++.+|-+.|-
T Consensus 19 kqt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s~~~LGkAcg 72 (84)
T PRK13600 19 KETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALGKHVG 72 (84)
T ss_pred HHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHhC
Confidence 456677777788999999999988766 55689999999999988866553
No 48
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=72.31 E-value=11 Score=29.86 Aligned_cols=38 Identities=24% Similarity=0.366 Sum_probs=32.9
Q ss_pred HHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCC
Q 013893 281 LIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISS 319 (434)
Q Consensus 281 ~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~ 319 (434)
..+.|...++++|++. .+.+.+...|.++||-++....
T Consensus 55 ~~~~l~~~~v~~vi~~-~iG~~~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 55 AAEFLADEGVDVVIVG-GIGPRALNKLRNAGIKVYKGAE 92 (103)
T ss_pred HHHHHHHcCCCEEEeC-CCCcCHHHHHHHCCCEEEEcCC
Confidence 4556667899999996 6999999999999999998776
No 49
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=69.96 E-value=15 Score=28.38 Aligned_cols=37 Identities=27% Similarity=0.421 Sum_probs=31.4
Q ss_pred HHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCC
Q 013893 282 IKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISS 319 (434)
Q Consensus 282 v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~ 319 (434)
.+.|...++++|++. .|.+.+...|.++||-++....
T Consensus 46 ~~~l~~~~v~~li~~-~iG~~~~~~L~~~gI~v~~~~~ 82 (94)
T PF02579_consen 46 AKFLAEEGVDVLICG-GIGEGAFRALKEAGIKVYQGAG 82 (94)
T ss_dssp HHHHHHTTESEEEES-CSCHHHHHHHHHTTSEEEESTS
T ss_pred HHHHHHcCCCEEEEe-CCCHHHHHHHHHCCCEEEEcCC
Confidence 445666899999998 6899999999999999999743
No 50
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=68.60 E-value=16 Score=28.64 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=32.0
Q ss_pred HHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCC
Q 013893 282 IKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISS 319 (434)
Q Consensus 282 v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~ 319 (434)
.+.+...++++|++. ++.+.+...|.++||.++....
T Consensus 54 ~~~l~~~~v~~vi~~-~iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 54 ARLLALEGCDAVLVG-GIGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHHCCCcEEEEc-ccCccHHHHHHHcCCEEEEcCC
Confidence 445667899999999 5999999999999999998765
No 51
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=54.75 E-value=36 Score=32.63 Aligned_cols=52 Identities=12% Similarity=0.054 Sum_probs=40.3
Q ss_pred HHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEe-C-C----HHHHHHHHHHhCCe
Q 013893 282 IKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKI-S-S----KFELRRFCRTTGAV 333 (434)
Q Consensus 282 v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~-v-~----~~~L~~ia~~tGa~ 333 (434)
++.|...+|||||.....++...+.|.+.||.++-. . . .+.++.+++++|..
T Consensus 84 ~E~I~al~PDlIi~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i~~lg~~~G~~ 141 (289)
T TIGR03659 84 MEKIKSLKPTVVLSVTTLEEDLGPKFKQLGVEATFLNLTSVDGMKKSITELGEKYGRE 141 (289)
T ss_pred HHHHhccCCcEEEEcCcccHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHHHHHhCCH
Confidence 457888999999998888888889999999866432 1 2 34588888888864
No 52
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=53.19 E-value=41 Score=29.69 Aligned_cols=52 Identities=12% Similarity=0.119 Sum_probs=37.5
Q ss_pred HHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEE--eCC-----HHHHHHHHHHhCCe
Q 013893 282 IKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLK--ISS-----KFELRRFCRTTGAV 333 (434)
Q Consensus 282 v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~--~v~-----~~~L~~ia~~tGa~ 333 (434)
++.|.+.+|+|||......+...+.|.+.||.++- ... .+.++.+++++|-.
T Consensus 53 ~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~~ 111 (195)
T cd01143 53 VEKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGAE 111 (195)
T ss_pred HHHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCCh
Confidence 45788899999998766666677889999995432 222 24577888888863
No 53
>PRK07283 hypothetical protein; Provisional
Probab=52.08 E-value=65 Score=25.60 Aligned_cols=50 Identities=18% Similarity=0.267 Sum_probs=38.2
Q ss_pred HHHHHHHHcCCeEEEeCCCcCHHHH----HHHHHCCeEEEEeCCHHHHHHHHHHhCC
Q 013893 280 GLIKAVAESGAEVIVSGAAVGEMAL----HFCERYKLMVLKISSKFELRRFCRTTGA 332 (434)
Q Consensus 280 ~~v~~i~~~~~~lvl~~~~I~~~al----~~l~~~~I~~v~~v~~~~L~~ia~~tGa 332 (434)
...+.|.+-++.+||.+.+.++... +.|..++|.++...++++ |.+++|=
T Consensus 25 ~v~~aik~gk~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~t~~e---LG~a~Gk 78 (98)
T PRK07283 25 LVVKAIQSGQAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTVFSTLE---LSAAVGK 78 (98)
T ss_pred HHHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHHH---HHHHhCC
Confidence 3456677778999999999999888 566678999988776654 5777773
No 54
>PRK06683 hypothetical protein; Provisional
Probab=49.67 E-value=75 Score=24.40 Aligned_cols=51 Identities=12% Similarity=0.129 Sum_probs=38.6
Q ss_pred HHHHHHHcCCeEEEeCCCcCHHHHH----HHHHCCeEEEEeCCHHHHHHHHHHhCCee
Q 013893 281 LIKAVAESGAEVIVSGAAVGEMALH----FCERYKLMVLKISSKFELRRFCRTTGAVA 334 (434)
Q Consensus 281 ~v~~i~~~~~~lvl~~~~I~~~al~----~l~~~~I~~v~~v~~~~L~~ia~~tGa~i 334 (434)
.++.|.+-++.+|+...+.++...+ ++..++|.++...++.+ |.+++|-.+
T Consensus 19 v~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~t~~e---LG~A~G~~~ 73 (82)
T PRK06683 19 TLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESVRK---LGKVAGIQV 73 (82)
T ss_pred HHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEECCHHH---HHHHhCCcc
Confidence 4567777889999999999987766 45678999988776655 477777643
No 55
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=49.31 E-value=80 Score=24.20 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=38.2
Q ss_pred HHHHHHHHcCCeEEEeCCCcCHHHHH----HHHHCCeEEEEeCCHHHHHHHHHHhCCe
Q 013893 280 GLIKAVAESGAEVIVSGAAVGEMALH----FCERYKLMVLKISSKFELRRFCRTTGAV 333 (434)
Q Consensus 280 ~~v~~i~~~~~~lvl~~~~I~~~al~----~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 333 (434)
+.++.|.+-++.+|+.+.+.++.... +|.+++|.++.--++.+| .+++|-.
T Consensus 18 ~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s~~eL---G~a~G~~ 72 (82)
T PRK13602 18 QTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSMKKL---GKACGIE 72 (82)
T ss_pred HHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECCHHHH---HHHHCCC
Confidence 34567777889999999999987654 457789998887766554 6666654
No 56
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=48.12 E-value=47 Score=33.15 Aligned_cols=52 Identities=17% Similarity=0.204 Sum_probs=39.3
Q ss_pred HHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeC---C----HHHHHHHHHHhCCe
Q 013893 282 IKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKIS---S----KFELRRFCRTTGAV 333 (434)
Q Consensus 282 v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v---~----~~~L~~ia~~tGa~ 333 (434)
+++|..++|||||....-.+...+.|.+.||.++... + .+.++.+++++|-.
T Consensus 112 ~E~Il~l~PDLVi~~~~~~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~~lG~i~G~e 170 (359)
T PRK09534 112 VEAVVGLDPDLVLAPNAVAGDTVTRLREAGITVFHFPAATSIEDVAEKTATIGRLTGNC 170 (359)
T ss_pred HHHHhcCCCCEEEEcCCCchHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHHHHHhCCH
Confidence 5688899999999876556667888999999876542 2 24567888888863
No 57
>cd00852 NifB NifB belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme as part of nitrogen fixation in bacteria. This domain is sometimes found fused to a N-terminal domain (the Radical SAM domain) in nifB-like proteins.
Probab=47.41 E-value=68 Score=25.58 Aligned_cols=31 Identities=13% Similarity=0.240 Sum_probs=27.1
Q ss_pred cCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCC
Q 013893 288 SGAEVIVSGAAVGEMALHFCERYKLMVLKISS 319 (434)
Q Consensus 288 ~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~ 319 (434)
.++++|++. +|.+.+...|.++||-+++...
T Consensus 64 ~~~~vvi~~-~iG~~a~~~L~~~GI~v~~~~~ 94 (106)
T cd00852 64 SDCDAVLCA-KIGDEPKEKLEEAGIEVIEAYA 94 (106)
T ss_pred cCCcEEeeh-hhCccHHHHHHHCCCEEEEecC
Confidence 589998887 8999999999999999996654
No 58
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=47.04 E-value=89 Score=24.04 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=37.2
Q ss_pred HHHHHHHcCCeEEEeCCCcCHHHHH----HHHHCCeEEEEeCCHHHHHHHHHHhCCe
Q 013893 281 LIKAVAESGAEVIVSGAAVGEMALH----FCERYKLMVLKISSKFELRRFCRTTGAV 333 (434)
Q Consensus 281 ~v~~i~~~~~~lvl~~~~I~~~al~----~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 333 (434)
.++.|.+-++.+||++.+.++.... ++..++|.++..-++.+ |.+++|-.
T Consensus 16 vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~t~~e---LG~A~G~~ 69 (82)
T PRK13601 16 TLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDTMKE---LGVMCGID 69 (82)
T ss_pred HHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeCCHHH---HHHHHCCc
Confidence 4567777889999999999987766 45678999876666655 46777754
No 59
>PRK07714 hypothetical protein; Provisional
Probab=46.66 E-value=93 Score=24.75 Aligned_cols=51 Identities=16% Similarity=0.257 Sum_probs=37.6
Q ss_pred HHHHHHHHcCCeEEEeCCCcCHHHHHH----HHHCCeEEEEeCCHHHHHHHHHHhCCe
Q 013893 280 GLIKAVAESGAEVIVSGAAVGEMALHF----CERYKLMVLKISSKFELRRFCRTTGAV 333 (434)
Q Consensus 280 ~~v~~i~~~~~~lvl~~~~I~~~al~~----l~~~~I~~v~~v~~~~L~~ia~~tGa~ 333 (434)
...+.+.+-.+.+||.+.+.++....- |..++|.++...++++| ..++|-.
T Consensus 25 ~v~~al~~g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~sk~eL---G~a~Gk~ 79 (100)
T PRK07714 25 LVLKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMRKVENRQQL---GHAIGKD 79 (100)
T ss_pred HHHHHHHhCCceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEeCCHHHH---HHHhCCC
Confidence 345677777899999999999876654 45679998887777555 6667754
No 60
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=46.30 E-value=63 Score=29.77 Aligned_cols=52 Identities=12% Similarity=0.144 Sum_probs=37.8
Q ss_pred HHHHHHcCCeEEEeCCCcCHH-HHHHHHHCCeEEEEe-C-C----HHHHHHHHHHhCCe
Q 013893 282 IKAVAESGAEVIVSGAAVGEM-ALHFCERYKLMVLKI-S-S----KFELRRFCRTTGAV 333 (434)
Q Consensus 282 v~~i~~~~~~lvl~~~~I~~~-al~~l~~~~I~~v~~-v-~----~~~L~~ia~~tGa~ 333 (434)
++.|...+|+|||....-++. ..+.|.+.||.++-. . . .+.++.|++++|-.
T Consensus 50 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~lg~~~g~~ 108 (245)
T cd01144 50 LERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEPQTLDDILADIRRLGTLAGRP 108 (245)
T ss_pred HHHHHhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhCCh
Confidence 468888999999997655444 488899999865432 1 2 34588899988875
No 61
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=45.29 E-value=85 Score=26.12 Aligned_cols=51 Identities=25% Similarity=0.309 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCeEEEeCCCcCHH-H----HHHHHHCCeEEEEeCCHHHHHHHHHHhCC
Q 013893 279 EGLIKAVAESGAEVIVSGAAVGEM-A----LHFCERYKLMVLKISSKFELRRFCRTTGA 332 (434)
Q Consensus 279 ~~~v~~i~~~~~~lvl~~~~I~~~-a----l~~l~~~~I~~v~~v~~~~L~~ia~~tGa 332 (434)
++.++.|.+-.+.+||.+.++++. . ..++.++||..+..-++.+| .+++|-
T Consensus 36 ~~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk~eL---G~a~Gk 91 (122)
T PRK04175 36 NETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSKKDL---GKAAGL 91 (122)
T ss_pred HHHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCHHHH---HHHhCC
Confidence 355667777778999999999773 2 23467789988777767554 555554
No 62
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=44.64 E-value=1.9e+02 Score=28.11 Aligned_cols=44 Identities=14% Similarity=0.128 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEE-eCCCcCHHHHHHHHHCCeEEEE
Q 013893 272 KTEEAKVEGLIKAVAESGAEVIV-SGAAVGEMALHFCERYKLMVLK 316 (434)
Q Consensus 272 ~~E~~~~~~~v~~i~~~~~~lvl-~~~~I~~~al~~l~~~~I~~v~ 316 (434)
+.-..+++++++.+...+..+++ +.+... ..++++.+.|+-++.
T Consensus 204 e~~~p~~k~i~~~i~~~g~~~~lH~cG~~~-~~~~~l~~~~~d~~~ 248 (330)
T cd03465 204 EFSLPYLKKVFDAIKALGGPVIHHNCGDTA-PILELMADLGADVFS 248 (330)
T ss_pred HHhhHHHHHHHHHHHHcCCceEEEECCCch-hHHHHHHHhCCCeEe
Confidence 44566777888888777665555 334433 456666666655444
No 63
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=43.90 E-value=58 Score=25.36 Aligned_cols=52 Identities=21% Similarity=0.361 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCeEEEeCCCcCHHHH-----HHHHHCCeEEEEeCCHHHHHHHHHHhCCe
Q 013893 279 EGLIKAVAESGAEVIVSGAAVGEMAL-----HFCERYKLMVLKISSKFELRRFCRTTGAV 333 (434)
Q Consensus 279 ~~~v~~i~~~~~~lvl~~~~I~~~al-----~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 333 (434)
++..+.+.+-.+.+|+.+.++++... .++.+++|.++...++.+| .+++|-.
T Consensus 21 ~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~s~~eL---G~~~g~~ 77 (95)
T PF01248_consen 21 KEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVPSKEEL---GRACGKK 77 (95)
T ss_dssp HHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEESHHHHH---HHHTTSS
T ss_pred HHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEECCHHHH---HHHHCCC
Confidence 45566777778889999999887433 4667899999988866555 6666654
No 64
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=42.05 E-value=97 Score=25.52 Aligned_cols=51 Identities=22% Similarity=0.258 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCCeEEEeCCCcCHH-H----HHHHHHCCeEEEEeCCHHHHHHHHHHhCC
Q 013893 279 EGLIKAVAESGAEVIVSGAAVGEM-A----LHFCERYKLMVLKISSKFELRRFCRTTGA 332 (434)
Q Consensus 279 ~~~v~~i~~~~~~lvl~~~~I~~~-a----l~~l~~~~I~~v~~v~~~~L~~ia~~tGa 332 (434)
+...+.|.+-.+.+|+.+.++++. . .++|.+++|..+..-++.+| .+++|-
T Consensus 32 ~~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk~eL---G~a~Gk 87 (117)
T TIGR03677 32 NEVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKKEDL---GAAAGL 87 (117)
T ss_pred HHHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCHHHH---HHHhCC
Confidence 345566777778999999999763 3 33567889988777777655 555554
No 65
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=41.57 E-value=1.5e+02 Score=24.30 Aligned_cols=51 Identities=25% Similarity=0.405 Sum_probs=43.2
Q ss_pred HHHHHcCCeEEEeCCCc------CHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCe
Q 013893 283 KAVAESGAEVIVSGAAV------GEMALHFCERYKLMVLKISSKFELRRFCRTTGAV 333 (434)
Q Consensus 283 ~~i~~~~~~lvl~~~~I------~~~al~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 333 (434)
+.+.+.++.+|++.-++ ++.+.++|.+.++-++..+-++.++|.-..-|+.
T Consensus 55 e~~lee~~E~ivvGTG~~G~l~l~~ea~e~~r~k~~~vi~~pT~EAikr~nel~~~k 111 (121)
T COG1504 55 EELLEEGPEVIVVGTGQSGMLELSEEAREFFRKKGCEVIELPTPEAIKRYNELRGKK 111 (121)
T ss_pred HHHHhcCCcEEEEecCceeEEEeCHHHHHHHHhcCCeEEEeCCHHHHHHHHHHhccc
Confidence 34555799999987665 7999999999999999999999999998888763
No 66
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=40.37 E-value=1.1e+02 Score=30.23 Aligned_cols=56 Identities=9% Similarity=-0.000 Sum_probs=41.3
Q ss_pred HHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCeecc
Q 013893 280 GLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAML 336 (434)
Q Consensus 280 ~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~ 336 (434)
..++.+.+.+|.+|+...+.+.. .+.|.++||.++-.+..-..-+-+.-.|+..+-
T Consensus 73 ~~l~vi~e~~v~~V~~~~G~P~~-~~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD~vV 128 (320)
T cd04743 73 AQLAVVRAIKPTFALIAGGRPDQ-ARALEAIGISTYLHVPSPGLLKQFLENGARKFI 128 (320)
T ss_pred HHHHHHHhcCCcEEEEcCCChHH-HHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEE
Confidence 35677888999999999887776 588999999998776543333446667876653
No 67
>cd01138 FeuA Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=39.98 E-value=78 Score=29.27 Aligned_cols=51 Identities=12% Similarity=0.091 Sum_probs=35.9
Q ss_pred HHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCC----HHHHHHHHHHhCCe
Q 013893 282 IKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISS----KFELRRFCRTTGAV 333 (434)
Q Consensus 282 v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~----~~~L~~ia~~tGa~ 333 (434)
+++|..++|||||+.....+ ..+-|.+.+..++-..+ .+.++.+++++|..
T Consensus 59 ~E~i~~l~PDlVi~~~~~~~-~~~~l~~~~p~~~~~~~~~~~~~~i~~lg~~~g~~ 113 (248)
T cd01138 59 LEKVLELKPDLIIVSSKQEE-NYEKLSKIAPTVPVSYNSSDWEEQLKEIGKLLNKE 113 (248)
T ss_pred HHHHhccCCCEEEeCCccHH-HHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHhCcH
Confidence 46788899999999877665 66777777644332221 46788888888864
No 68
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=39.88 E-value=1.3e+02 Score=23.86 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=37.1
Q ss_pred HHHHHHHHcCCeEEEeCCCcCHHHHH----HHHHCCeEEEEeC-CHHHHHHHHHHhCC
Q 013893 280 GLIKAVAESGAEVIVSGAAVGEMALH----FCERYKLMVLKIS-SKFELRRFCRTTGA 332 (434)
Q Consensus 280 ~~v~~i~~~~~~lvl~~~~I~~~al~----~l~~~~I~~v~~v-~~~~L~~ia~~tGa 332 (434)
..++.|.+.++.+||.+.+.++.... ++.+++|.++... ++.+| .+++|-
T Consensus 23 ~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~tk~eL---G~a~Gk 77 (99)
T PRK01018 23 RTIKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEGSSVEL---GTLCGK 77 (99)
T ss_pred HHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCHHHH---HHHhCC
Confidence 34567777889999999999876655 5567899988864 66555 677774
No 69
>PF12846 AAA_10: AAA-like domain
Probab=39.42 E-value=84 Score=29.65 Aligned_cols=58 Identities=7% Similarity=0.094 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHcCCeEEEeCCCcCHHH-----HHHHHHCCeEEEEeCCHHHHHHHHHHhCCe
Q 013893 276 AKVEGLIKAVAESGAEVIVSGAAVGEMA-----LHFCERYKLMVLKISSKFELRRFCRTTGAV 333 (434)
Q Consensus 276 ~~~~~~v~~i~~~~~~lvl~~~~I~~~a-----l~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 333 (434)
+.+.++++...+.|+.+++....+++.. -..+.+-+..++-+....+.+.+++..|-+
T Consensus 240 ~~~~~~~~~~Rk~g~~~~l~tQ~~~~l~~~~~~~~i~~n~~~~i~~~~~~~~~~~l~~~~gl~ 302 (304)
T PF12846_consen 240 EFLDELLREGRKYGVGLILATQSPSDLPKSPIEDAILANCNTKIIFRLEDSDDAELAELFGLT 302 (304)
T ss_pred hhhhHHHHHHHhcCCEEEEeeCCHHHHhccchHHHHHHhCCcEEEecCChHHHHHHHHHcCcC
Confidence 3455677788899999999999999988 788999999999888888887799988764
No 70
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=39.32 E-value=72 Score=28.04 Aligned_cols=50 Identities=10% Similarity=0.078 Sum_probs=35.1
Q ss_pred HHHHHHcCCeEEEeCCCcCHH-HHHHHHHCCeEEEEeC-----C--HHHHHHHHHHhC
Q 013893 282 IKAVAESGAEVIVSGAAVGEM-ALHFCERYKLMVLKIS-----S--KFELRRFCRTTG 331 (434)
Q Consensus 282 v~~i~~~~~~lvl~~~~I~~~-al~~l~~~~I~~v~~v-----~--~~~L~~ia~~tG 331 (434)
++.|...+|+|||......+. ..+.|.+.||.++-.- . .+.++.+.+++|
T Consensus 62 ~E~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~~~~~~~~~~~i~~~g~~~g 119 (186)
T cd01141 62 VELIVALKPDLVILYGGFQAQTILDKLEQLGIPVLYVNEYPSPLGRAEWIKFAAAFYG 119 (186)
T ss_pred HHHHhccCCCEEEEecCCCchhHHHHHHHcCCCEEEeCCCCChhhHHHHHHHHHHHcC
Confidence 568888999999987655553 8888999998543321 1 234677777777
No 71
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=38.99 E-value=1.3e+02 Score=24.92 Aligned_cols=50 Identities=22% Similarity=0.321 Sum_probs=37.8
Q ss_pred HHHHHHHHHHcCCeEEEeCCCcCHH-HH----HHHHHCCeEEEEeCCHHHHHHHH
Q 013893 278 VEGLIKAVAESGAEVIVSGAAVGEM-AL----HFCERYKLMVLKISSKFELRRFC 327 (434)
Q Consensus 278 ~~~~v~~i~~~~~~lvl~~~~I~~~-al----~~l~~~~I~~v~~v~~~~L~~ia 327 (434)
++..++.|.+-.+.+|+.+.++++. .. .+|+++||.++--.++.+|-+.+
T Consensus 32 ~~e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~sk~~LG~a~ 86 (116)
T COG1358 32 TNEVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSKKELGKAV 86 (116)
T ss_pred HHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCCHHHHHHHh
Confidence 4566777777789999999999933 22 35667999999998888875544
No 72
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=38.62 E-value=1.2e+02 Score=24.65 Aligned_cols=51 Identities=12% Similarity=0.125 Sum_probs=37.6
Q ss_pred HHHHHHHHcCCeEEEeCCCcCHHHH----HHHHHCCeEEEEe-CCHHHHHHHHHHhCCe
Q 013893 280 GLIKAVAESGAEVIVSGAAVGEMAL----HFCERYKLMVLKI-SSKFELRRFCRTTGAV 333 (434)
Q Consensus 280 ~~v~~i~~~~~~lvl~~~~I~~~al----~~l~~~~I~~v~~-v~~~~L~~ia~~tGa~ 333 (434)
..++.|.+-++.+||++.+.++... +++..++|.++.. -+..+ |.+++|-.
T Consensus 32 ~vlkalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~t~~e---LG~A~Gk~ 87 (108)
T PTZ00106 32 STLKALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNNND---LGTACGRH 87 (108)
T ss_pred HHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCCCHHH---HHHHhCCc
Confidence 4566777788999999999988754 4667789998874 55555 47777743
No 73
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=38.06 E-value=92 Score=29.31 Aligned_cols=52 Identities=10% Similarity=0.127 Sum_probs=36.3
Q ss_pred HHHHHHcCCeEEEeCCC-cCHHHHHHHHHCCeEEEEeC--C----HHHHHHHHHHhCCe
Q 013893 282 IKAVAESGAEVIVSGAA-VGEMALHFCERYKLMVLKIS--S----KFELRRFCRTTGAV 333 (434)
Q Consensus 282 v~~i~~~~~~lvl~~~~-I~~~al~~l~~~~I~~v~~v--~----~~~L~~ia~~tGa~ 333 (434)
++.|..++||||+...+ -.+...+.|.+.||.++..- + .+.++.+++++|-.
T Consensus 65 ~E~il~l~PDlVi~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~i~~lg~~~g~~ 123 (260)
T PRK03379 65 LERIVALKPDLVLAWRGGNAERQVDQLASLGIKVMWVDATSIEQIANALRQLAPWSPQP 123 (260)
T ss_pred HHHHHhcCCCEEEEecCCCcHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHcCCH
Confidence 45788899999998643 34567788889998765432 2 24577788888753
No 74
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=37.49 E-value=1.4e+02 Score=29.15 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=41.0
Q ss_pred HHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCeecc
Q 013893 280 GLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAML 336 (434)
Q Consensus 280 ~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~ 336 (434)
+.++.+.+.++++|.+..+.++...+.+.++|+.++-.+...+.-+-+.-.|+..+.
T Consensus 78 ~~~~~~~~~~v~~v~~~~g~p~~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~Iv 134 (307)
T TIGR03151 78 ELVDLVIEEKVPVVTTGAGNPGKYIPRLKENGVKVIPVVASVALAKRMEKAGADAVI 134 (307)
T ss_pred HHHHHHHhCCCCEEEEcCCCcHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEE
Confidence 356677788999998888777778888999998887766544333444455877663
No 75
>TIGR00129 fdhD_narQ formate dehydrogenase family accessory protein FdhD. FdhD in E. coli and NarQ in B. subtilis are required for the activity of formate dehydrogenase. The gene name in B. subtilis reflects the requirement of the neighboring gene narA for nitrate assimilation, for which NarQ is not required. In some species, the gene is associated not with a known formate dehydrogenase but with a related putative molybdopterin-binding oxidoreductase. A reasonable hypothesis is that this protein helps prepare a required cofactor for assembly into the holoenzyme.
Probab=37.16 E-value=70 Score=29.98 Aligned_cols=41 Identities=17% Similarity=0.386 Sum_probs=35.4
Q ss_pred HHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCH
Q 013893 280 GLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSK 320 (434)
Q Consensus 280 ~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~ 320 (434)
+++.+..+.|+++|++...-...+.++..+.||+.+..++.
T Consensus 183 emv~Ka~~aGIpvlvS~sapT~lavelA~~~giTLigf~R~ 223 (237)
T TIGR00129 183 EMVQKAARCGVPIIASKSAPTDLAIEVAEESNITLIGFARN 223 (237)
T ss_pred HHHHHHHHcCCCEEEEcccchHHHHHHHHHhCCEEEEEecC
Confidence 35778888999999999999999999999999998887654
No 76
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=36.80 E-value=1.1e+02 Score=27.50 Aligned_cols=76 Identities=13% Similarity=0.211 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCC----eEEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcceee
Q 013893 276 AKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYK----LMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDS 351 (434)
Q Consensus 276 ~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~----I~~v~~v~~~~L~~ia~~tGa~ii~~~~~l~~~~lG~~~~ 351 (434)
..+++.++.+.+.++++++++.+.++.+-.+|.+.. |-.++.++..+- -..-| .-++-....+.+|+|+.
T Consensus 76 p~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~---ih~dg---~h~i~~~~ds~fG~dK~ 149 (220)
T COG4359 76 PGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDY---IHIDG---QHSIKYTDDSQFGHDKS 149 (220)
T ss_pred ccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCce---EcCCC---ceeeecCCccccCCCcc
Confidence 457788999999999999999999999988887655 777776654321 00001 01122234467888887
Q ss_pred EEEEEE
Q 013893 352 VSVEEI 357 (434)
Q Consensus 352 v~~~~i 357 (434)
-.+...
T Consensus 150 ~vI~~l 155 (220)
T COG4359 150 SVIHEL 155 (220)
T ss_pred hhHHHh
Confidence 555443
No 77
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=36.35 E-value=1.5e+02 Score=24.46 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHcCCeEEEeCCC-----cCHHHHHHHHHCCeEEEEeCCHH
Q 013893 277 KVEGLIKAVAESGAEVIVSGAA-----VGEMALHFCERYKLMVLKISSKF 321 (434)
Q Consensus 277 ~~~~~v~~i~~~~~~lvl~~~~-----I~~~al~~l~~~~I~~v~~v~~~ 321 (434)
.+.++++.+.+.|+--+.+..+ |++.+.++++++++.++.-+..-
T Consensus 60 ~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPli~ip~~~ 109 (123)
T PF07905_consen 60 ELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGLPLIEIPWEV 109 (123)
T ss_pred HHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCCCEEEeCCCC
Confidence 3456788999988876666544 99999999999999999876543
No 78
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=35.43 E-value=1.4e+02 Score=24.41 Aligned_cols=46 Identities=15% Similarity=0.118 Sum_probs=35.7
Q ss_pred cCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCC----HHHHHHHHHHhCCee
Q 013893 288 SGAEVIVSGAAVGEMALHFCERYKLMVLKISS----KFELRRFCRTTGAVA 334 (434)
Q Consensus 288 ~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~----~~~L~~ia~~tGa~i 334 (434)
.++++|||. +|.+.+...|.+.||-+++.-. .+.|+.+.+..-..+
T Consensus 62 ~~c~vvi~~-~IG~~a~~~L~~~gI~~~~~~~~~~v~eal~~l~~~~~~~~ 111 (119)
T TIGR02663 62 KDCAILYCL-AIGGPAAAKVVAAKIHPIKVNEPESISELLERLQKMLKGNP 111 (119)
T ss_pred CCCcEEEEh-hcCccHHHHHHHcCCeeEecCCCccHHHHHHHHHHHHcCCC
Confidence 589998887 8999999999999999997432 456777777664433
No 79
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=35.21 E-value=40 Score=34.62 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhhcCCeEEeCCCHHHHHHHHHHHHhhhc
Q 013893 391 ERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFK 431 (434)
Q Consensus 391 ~~~i~dal~~~~~~~~~~~vvpGgG~~E~~l~~~L~~~a~~ 431 (434)
++.+.+|+..+|++ ++|-+|.|||+-+-.....|+.|++.
T Consensus 216 ~~eL~~A~~lik~a-k~PlIvaGGGv~YS~A~~~L~af~E~ 255 (617)
T COG3962 216 ERELADAAALIKSA-KKPLIVAGGGVLYSGAREALRAFAET 255 (617)
T ss_pred HHHHHHHHHHHHhc-CCCEEEecCceeechHHHHHHHHHHh
Confidence 35677788888887 56779999999998888899988864
No 80
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=34.76 E-value=1.2e+02 Score=27.71 Aligned_cols=52 Identities=12% Similarity=0.158 Sum_probs=36.9
Q ss_pred HHHHHHcCCeEEEeCCC-cCHHHHHHHHHCCeEEEEe--C-C----HHHHHHHHHHhCCe
Q 013893 282 IKAVAESGAEVIVSGAA-VGEMALHFCERYKLMVLKI--S-S----KFELRRFCRTTGAV 333 (434)
Q Consensus 282 v~~i~~~~~~lvl~~~~-I~~~al~~l~~~~I~~v~~--v-~----~~~L~~ia~~tGa~ 333 (434)
+++|..++|+||+.... .++...+.|.+.||.++-. . . .+.++.++.++|-.
T Consensus 51 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gipvv~~~~~~~~~~~~~~~~~lg~i~g~e 110 (235)
T cd01149 51 AEGVLSLKPTLVIASDEAGPPEALDQLRAAGVPVVTVPSTPTLDGLLTKIRQVAQALGVP 110 (235)
T ss_pred HHHhhccCCCEEEEcCCCCCHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHHhCCH
Confidence 35788899999999664 4556778899999876542 2 2 34577788877764
No 81
>cd00853 NifX NifX belongs to a family of iron-molybdenum cluster-binding proteins that includes NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. The protein is part of the nitrogen fixation gene cluster in nitrogen-fixing bacteria and has sequence similarity to other members of the cluster.
Probab=34.42 E-value=1.2e+02 Score=23.90 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=27.2
Q ss_pred cCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCC
Q 013893 288 SGAEVIVSGAAVGEMALHFCERYKLMVLKISS 319 (434)
Q Consensus 288 ~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~ 319 (434)
.++++||+. +|.+.+...|.++||-++....
T Consensus 60 ~~~~vvi~~-~iG~~a~~~L~~~GI~v~~~~~ 90 (102)
T cd00853 60 EDCAILYCA-AIGGPAAARLVRAGIHPIKVPE 90 (102)
T ss_pred CCCcEEEEh-hcChhHHHHHHHcCCEEEEcCC
Confidence 488998887 8999999999999999997664
No 82
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=34.22 E-value=81 Score=30.04 Aligned_cols=41 Identities=17% Similarity=0.331 Sum_probs=35.3
Q ss_pred HHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCH
Q 013893 280 GLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSK 320 (434)
Q Consensus 280 ~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~ 320 (434)
+++.+..+.|+++|++-..-...+.++..+.||+.|..++.
T Consensus 212 emv~Ka~~aGipvivS~saPT~lAVelA~~~giTLiGf~R~ 252 (263)
T PRK00724 212 EMVQKAAMAGIPILVAVSAPTSLAVELAEELGLTLVGFARG 252 (263)
T ss_pred HHHHHHHHcCCcEEEEcccchHHHHHHHHHhCCEEEEEecC
Confidence 35778888999999999999999999999999998877654
No 83
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=33.22 E-value=1.2e+02 Score=28.09 Aligned_cols=54 Identities=20% Similarity=0.252 Sum_probs=38.8
Q ss_pred HHHHHHHHHcC--CeEEEe--CCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCC
Q 013893 279 EGLIKAVAESG--AEVIVS--GAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGA 332 (434)
Q Consensus 279 ~~~v~~i~~~~--~~lvl~--~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia~~tGa 332 (434)
..+++++.+.. -++|+. .+.=++....+|.++|+.+++--..+.|+|++.+..+
T Consensus 32 ~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~G~~vfrGs~~dVL~Rf~~a~~a 89 (241)
T COG1861 32 EYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSHGFYVFRGSEEDVLQRFIIAIKA 89 (241)
T ss_pred HHHHHHHhccccccceEEEecCCcchhHHHHHHHHcCeeEecCCHHHHHHHHHHHHHh
Confidence 34556665544 344443 3445666667899999999999999999999987755
No 84
>COG1526 FdhD Uncharacterized protein required for formate dehydrogenase activity [Energy production and conversion]
Probab=32.28 E-value=90 Score=29.79 Aligned_cols=41 Identities=20% Similarity=0.304 Sum_probs=36.2
Q ss_pred HHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCH
Q 013893 280 GLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSK 320 (434)
Q Consensus 280 ~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~ 320 (434)
+++++.++.|++++++-....+.+.+...+.||+.|..++.
T Consensus 212 EmV~Kaa~~Gipil~S~SAPT~Lai~~Ae~~~iTLvgf~R~ 252 (266)
T COG1526 212 EMVQKAAMAGIPILASVSAPTSLAIEAAERLGLTLVGFVRG 252 (266)
T ss_pred HHHHHHHHhCCcEEEEcccchHHHHHHHHHcCCEEEEEecC
Confidence 35788899999999999999999999999999998887754
No 85
>cd01140 FatB Siderophore binding protein FatB. These proteins have been shown to function as ABC-type initial receptors in the siderophore-mediated iron uptake in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=31.47 E-value=1.3e+02 Score=28.18 Aligned_cols=52 Identities=15% Similarity=0.173 Sum_probs=35.5
Q ss_pred HHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCC-------HHHHHHHHHHhCCe
Q 013893 282 IKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISS-------KFELRRFCRTTGAV 333 (434)
Q Consensus 282 v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~-------~~~L~~ia~~tGa~ 333 (434)
++.|..++||||+....-.+...++....++.++..-. .+.++.+++++|-.
T Consensus 65 ~E~i~al~PDlvi~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~lg~~~g~~ 123 (270)
T cd01140 65 LEAIAALKPDLIIIGGRLAEKYDELKKIAPTIDLGADLKNYLESVKQNIETLGKIFGKE 123 (270)
T ss_pred HHHHhcCCCCEEEECCccHHHHHHHHHhCCeeEEecCchHHHHHHHHHHHHHHHHhCcH
Confidence 45788899999998765555555556667776665321 23588888888853
No 86
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=31.18 E-value=2.2e+02 Score=22.89 Aligned_cols=51 Identities=16% Similarity=0.160 Sum_probs=36.8
Q ss_pred HHHHHHHHcCCeEEEeCCCcCHHHHHHH----HHCCeEEEEeCCHHHHHHHHHHhCCe
Q 013893 280 GLIKAVAESGAEVIVSGAAVGEMALHFC----ERYKLMVLKISSKFELRRFCRTTGAV 333 (434)
Q Consensus 280 ~~v~~i~~~~~~lvl~~~~I~~~al~~l----~~~~I~~v~~v~~~~L~~ia~~tGa~ 333 (434)
...+.|.+-++.+||.+.+.++....-+ ..++|.++...++++ |..++|=.
T Consensus 24 ~v~~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~~e---Lg~a~Gk~ 78 (104)
T PRK05583 24 KCEEAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSKEE---LGNAIGRD 78 (104)
T ss_pred HHHHHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecCHHH---HHHHhCCC
Confidence 3455677778999999999988766544 457888888776655 46677754
No 87
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=30.06 E-value=2.2e+02 Score=26.90 Aligned_cols=86 Identities=16% Similarity=0.302 Sum_probs=50.5
Q ss_pred HHHHhhhhcCCCCCccceeEcCCCCE-------------EEecCHHHHHhhccccChH--HHHHHHHHHhhhhhhCCCch
Q 013893 37 QLSTITRTSLGPNGMNKMVINHLDKL-------------FVTNDAATIVNELEVQHPA--AKLLVLAGKAQQEEIGDGAN 101 (434)
Q Consensus 37 ~l~~~v~tslGP~G~~kli~~~~g~~-------------~iTndg~tIl~~l~~~hP~--a~ll~~~~~~~~~~~GDGtt 101 (434)
.+++.=+--|-+.|..-+|....|+. .=+=++..++|-.+..||. -+|+..+...--
T Consensus 183 ~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~~~~-------- 254 (333)
T KOG0991|consen 183 EVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLKRNI-------- 254 (333)
T ss_pred HHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHhccH--------
Confidence 44444455666677776666544421 0111334566667788995 566665544322
Q ss_pred HHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 013893 102 LTISFAGEILQGAEELIRMGLHPSEIISGYTKAIN 136 (434)
Q Consensus 102 s~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~ 136 (434)
--|..++.+.++ .|++|..|+..+....+
T Consensus 255 ---~~A~~il~~lw~---lgysp~Dii~~~FRv~K 283 (333)
T KOG0991|consen 255 ---DEALKILAELWK---LGYSPEDIITTLFRVVK 283 (333)
T ss_pred ---HHHHHHHHHHHH---cCCCHHHHHHHHHHHHH
Confidence 236677776554 59999999987654433
No 88
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=29.44 E-value=1.4e+02 Score=29.28 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=35.1
Q ss_pred HHHHHHcCCeEEEeCCCc-----CHHHHHHHHHCCeEEEEeC----C----HHHHHHHHHHhCC
Q 013893 282 IKAVAESGAEVIVSGAAV-----GEMALHFCERYKLMVLKIS----S----KFELRRFCRTTGA 332 (434)
Q Consensus 282 v~~i~~~~~~lvl~~~~I-----~~~al~~l~~~~I~~v~~v----~----~~~L~~ia~~tGa 332 (434)
+++|..++|+|||..... .....+.|.+.||.++-.- + .+.++.+++++|-
T Consensus 84 ~E~l~~l~PDLIi~~~~~~~~~~~~~~~~~l~~~gipvv~~~~~~~~~~~~~~~i~~lg~i~g~ 147 (342)
T cd01139 84 VEKVLTLKPDLVILNIWAKTTAEESGILEKLEQAGIPVVFVDFRQKPLKNTTPSMRLLGKALGR 147 (342)
T ss_pred HHHHhhcCCCEEEEeccccccchhhHHHHHHHHcCCcEEEEeCCCchhhhHHHHHHHHHHHhCC
Confidence 567888999999986543 3457778888887654321 1 3457778888775
No 89
>cd01146 FhuD Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.
Probab=29.35 E-value=1.5e+02 Score=27.40 Aligned_cols=52 Identities=21% Similarity=0.189 Sum_probs=35.5
Q ss_pred HHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCC--H----HHHHHHHHHhCCe
Q 013893 282 IKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISS--K----FELRRFCRTTGAV 333 (434)
Q Consensus 282 v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~--~----~~L~~ia~~tGa~ 333 (434)
+++|..++|+|||......+...+.|.+.+..++-... . +.++.+++++|..
T Consensus 58 ~E~i~~l~PDlii~~~~~~~~~~~~l~~~~p~v~~~~~~~~~~~~~~i~~lg~~~g~~ 115 (256)
T cd01146 58 LEAIAALKPDLILGSASRHDEIYDQLSQIAPTVLLDSSPWLAEWKENLRLIAKALGKE 115 (256)
T ss_pred HHHHHhcCCCEEEeecccchhHHHHHHhhCCEEEecCCCcHHHHHHHHHHHHHHhCcH
Confidence 45788899999999887776566667665544333332 2 2578888888864
No 90
>PF02634 FdhD-NarQ: FdhD/NarQ family; InterPro: IPR003786 Formate dehydrogenase is required for nitrate inducible formate dehydrogenase activity. In Wolinella succinogenes it is a membranous molybdo-enzyme which is involved in phosphorylative electron transport. The functional formate dehydrogenase may be made up of three or four different subunits []. In Escherichia coli, FdhD is required for the formation of active formate dehydrogenases.; GO: 0008863 formate dehydrogenase (NAD+) activity, 0009326 formate dehydrogenase complex; PDB: 2PW9_D.
Probab=27.70 E-value=85 Score=29.31 Aligned_cols=39 Identities=21% Similarity=0.416 Sum_probs=26.5
Q ss_pred HHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCC
Q 013893 281 LIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISS 319 (434)
Q Consensus 281 ~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~ 319 (434)
++.+..+.|+++|++...-...+.++-.+.||+.+..++
T Consensus 184 mv~Ka~~aGipvivS~sapT~~av~~A~~~gitLigf~R 222 (236)
T PF02634_consen 184 MVQKAARAGIPVIVSRSAPTSLAVELARKLGITLIGFAR 222 (236)
T ss_dssp HHHHHHHHT-SEEEESS-B-HHHHHHHHHHT-EEEEEEE
T ss_pred HHHHHHHcCCCEEEEcccccHHHHHHHHHhCCEEEEEec
Confidence 566777778888888888888888888888887766553
No 91
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=27.52 E-value=67 Score=30.21 Aligned_cols=29 Identities=38% Similarity=0.725 Sum_probs=24.7
Q ss_pred EEEEEecCCHhHHHHHHHHHHHHHHHHHHh
Q 013893 375 STVVLRGSTDSILDDLERAVDDGVNTYKAM 404 (434)
Q Consensus 375 ~TIllrG~t~~~l~e~~~~i~dal~~~~~~ 404 (434)
.||+|+| ++..+++.++.++|-+++++-.
T Consensus 121 mTIVl~G-td~VveQa~rQiedlVnV~aVl 149 (309)
T KOG2663|consen 121 MTIVLQG-TDGVVEQARRQIEDLVNVYAVL 149 (309)
T ss_pred ceEEEec-cHHHHHHHHHHHHHhhhhheee
Confidence 4999999 6788899999999999887543
No 92
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=26.20 E-value=2.3e+02 Score=25.62 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=37.8
Q ss_pred HHHHHHcCCeEEEeCCCc-CHHHHHHHHHCCeEEEEeCC-------HHHHHHHHHHhCCe
Q 013893 282 IKAVAESGAEVIVSGAAV-GEMALHFCERYKLMVLKISS-------KFELRRFCRTTGAV 333 (434)
Q Consensus 282 v~~i~~~~~~lvl~~~~I-~~~al~~l~~~~I~~v~~v~-------~~~L~~ia~~tGa~ 333 (434)
+++|..++|+|||..... ......-+.+.+|.++-.-. .+.++.++.++|..
T Consensus 53 ~E~i~~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~i~~lg~~~g~~ 112 (238)
T PF01497_consen 53 LEAILALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSSPFDDWKEQIRQLGKALGKE 112 (238)
T ss_dssp HHHHHHT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTTCSHHHHHHHHHHHHHHTSH
T ss_pred HHHHHhCCCCEEEEeccccchHHHHHHhcccceEEEeecccchHHHHHHHHHHHHhcccH
Confidence 357888999999998887 67777777888987664332 35688999999975
No 93
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=26.02 E-value=2.1e+02 Score=28.08 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=38.0
Q ss_pred HHHHHHHHHHcCCeEEEeCCCcC-HHHHHHHHHCCeEEEEeCC-HHHHHHHHHHhCCe
Q 013893 278 VEGLIKAVAESGAEVIVSGAAVG-EMALHFCERYKLMVLKISS-KFELRRFCRTTGAV 333 (434)
Q Consensus 278 ~~~~v~~i~~~~~~lvl~~~~I~-~~al~~l~~~~I~~v~~v~-~~~L~~ia~~tGa~ 333 (434)
+...++.+.+.++++|...-+.. +...+.+.++||.++-.+. .++.+. +.-.|+.
T Consensus 102 ~~~~~~~~~~~~~~~v~~~~G~p~~~~i~~l~~~gi~v~~~v~s~~~A~~-a~~~G~D 158 (330)
T PF03060_consen 102 FEEQLDVALEAKPDVVSFGFGLPPPEVIERLHAAGIKVIPQVTSVREARK-AAKAGAD 158 (330)
T ss_dssp HHHHHHHHHHS--SEEEEESSSC-HHHHHHHHHTT-EEEEEESSHHHHHH-HHHTT-S
T ss_pred cccccccccccceEEEEeecccchHHHHHHHHHcCCccccccCCHHHHHH-hhhcCCC
Confidence 55667788888999988877777 8888999999999887765 555554 4445643
No 94
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=25.88 E-value=1.5e+02 Score=25.67 Aligned_cols=54 Identities=6% Similarity=-0.034 Sum_probs=42.1
Q ss_pred ceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcCCeEEeCCCHHHHHHHHHHH
Q 013893 373 SVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLK 426 (434)
Q Consensus 373 ~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGgG~~E~~l~~~L~ 426 (434)
..--|+|.|+-+.+.+..-..-......++.+.++|..+.|=+.-.+.|.+.|.
T Consensus 7 ~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i~ 60 (158)
T PF07685_consen 7 DADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESII 60 (158)
T ss_pred CCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHHh
Confidence 344678888888887766666666777888888888888888888888999887
No 95
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=24.99 E-value=2e+02 Score=23.49 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=24.0
Q ss_pred HHHHHHHHcCCe-EEEeCCCcCHHHHHHHHHCCeEEEEe
Q 013893 280 GLIKAVAESGAE-VIVSGAAVGEMALHFCERYKLMVLKI 317 (434)
Q Consensus 280 ~~v~~i~~~~~~-lvl~~~~I~~~al~~l~~~~I~~v~~ 317 (434)
..++.+.+.|+. +++..+..++.+.+++.++|+-++..
T Consensus 70 ~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 70 EIVDEAAALGVKAVWLQPGAESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp HHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-EEEES
T ss_pred HHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCEEEeC
Confidence 346677777776 45556677888888999999888743
No 96
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=23.88 E-value=1.9e+02 Score=26.82 Aligned_cols=52 Identities=10% Similarity=0.122 Sum_probs=33.1
Q ss_pred HHHHHHcCCeEEEeCCCcCH-HHHHHHHH-CCeEEEEeCC-------HHHHHHHHHHhCCe
Q 013893 282 IKAVAESGAEVIVSGAAVGE-MALHFCER-YKLMVLKISS-------KFELRRFCRTTGAV 333 (434)
Q Consensus 282 v~~i~~~~~~lvl~~~~I~~-~al~~l~~-~~I~~v~~v~-------~~~L~~ia~~tGa~ 333 (434)
+++|..++|||||....... ...+.|.+ .||.++..-. .+.++.+++++|-.
T Consensus 67 ~E~i~~l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~~~~~~~~~~i~~lg~~~g~~ 127 (262)
T cd01147 67 YEKIAALKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGGDSLEDTPEQIRLLGKVLGKE 127 (262)
T ss_pred HHHHHhcCCCEEEEecCCccchhHHHHHHhhCCCEEEEecCCchHhHHHHHHHHHHHhCCH
Confidence 45888899999998766554 23444544 7765443221 23477888888853
No 97
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=23.21 E-value=84 Score=26.20 Aligned_cols=45 Identities=11% Similarity=0.233 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHcCCeEEEeCCCc--CHHHHHHHHHCCeEEEEeCC
Q 013893 275 EAKVEGLIKAVAESGAEVIVSGAAV--GEMALHFCERYKLMVLKISS 319 (434)
Q Consensus 275 ~~~~~~~v~~i~~~~~~lvl~~~~I--~~~al~~l~~~~I~~v~~v~ 319 (434)
.+..++.++++...++++||.+.+. ++..++.+.++++.+++-..
T Consensus 67 ~~~r~~~l~~l~~~~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t~~ 113 (127)
T PF02603_consen 67 EEERKERLEKLFSYNPPCIIVTRGLEPPPELIELAEKYNIPLLRTPL 113 (127)
T ss_dssp HHHHCCHHHHHCTTT-S-EEEETTT---HHHHHHHHHCT--EEEESS
T ss_pred HHHHHHHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHhCCcEEEcCC
Confidence 3344566788888999988877665 68888899999999987643
No 98
>cd00636 TroA-like Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between two globular domains linked by a single helix. Many of these proteins also possess a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). The TroA-like proteins differ in their fold and ligand-binding mechanism from the PBPI and PBPII proteins, but are structurally similar, however, to the beta-subunit of the nitrogenase molybdenum-iron protein MoFe. Most TroA-like proteins are encoded by ABC-type operons and appear to function as periplasmic components of ABC transporters in metal ion uptake.
Probab=22.17 E-value=2.4e+02 Score=22.63 Aligned_cols=34 Identities=15% Similarity=0.193 Sum_probs=24.9
Q ss_pred HHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEE
Q 013893 282 IKAVAESGAEVIVSGAAVGEMALHFCERYKLMVL 315 (434)
Q Consensus 282 v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v 315 (434)
.+.|...+|++||..+...+...+.+.+.||.++
T Consensus 54 ~E~l~~l~pDlvi~~~~~~~~~~~~l~~~~i~~~ 87 (148)
T cd00636 54 LEKIAALKPDLIIANGSGLEAWLDKLSKIAIPVV 87 (148)
T ss_pred HHHHhccCCCEEEEecccchhHHHHHHHhCCCEE
Confidence 3466777999999988776666777888775433
No 99
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=22.16 E-value=1.2e+02 Score=20.76 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=11.0
Q ss_pred HHHHHHHHHHcCCChhhHH
Q 013893 110 ILQGAEELIRMGLHPSEII 128 (434)
Q Consensus 110 ll~~a~~li~~gi~p~~Ii 128 (434)
-|.-+.+|++.|++|..+.
T Consensus 23 tL~ici~L~e~GVnPeaLA 41 (48)
T PF12554_consen 23 TLSICIELCENGVNPEALA 41 (48)
T ss_pred HHHHHHHHHHCCCCHHHHH
Confidence 3444556666677766544
No 100
>PF04471 Mrr_cat: Restriction endonuclease; InterPro: IPR007560 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. This entry represents Mrr, a type IV restriction endonuclease involved in the acceptance of modified foreign DNA, restricting both adenine- and cytosine-methylated DNA. Plasmids carrying HincII, HpaI, and TaqI R and M genes are severely restricted in Escherichia coli strains that are Mrr+ []. Mrr appears to be the final effector of the bacterial SOS response, which is not only a vital reply to DNA damage but also constitutes an essential mechanism for the generation of genetic variability that in turn fuels adaptation and resistance development in bacterial populations []. Mrr possesses a cleavage domain that is similar to that found in type II restriction enzymes, however it has an unusual glutamine residue at the central position of the (D/E)-(D/E)XK hallmark of the active site [].; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0009307 DNA restriction-modification system; PDB: 1Y88_A.
Probab=21.53 E-value=1.4e+02 Score=23.54 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=15.6
Q ss_pred CCeEEEeCCCcCHHHHHHHHH-CCeEEEE
Q 013893 289 GAEVIVSGAAVGEMALHFCER-YKLMVLK 316 (434)
Q Consensus 289 ~~~lvl~~~~I~~~al~~l~~-~~I~~v~ 316 (434)
..-++++..++++.|.++..+ ++|.++.
T Consensus 79 ~~~iivt~~~~t~~a~~~~~~~~~I~l~d 107 (115)
T PF04471_consen 79 DKGIIVTSSGFTPEAKEFAEKFKNIELID 107 (115)
T ss_dssp SEEEEE-SSEE-HHHHHHHH---------
T ss_pred CEEEEEECCcCCHHHHHHHHhhccccccc
Confidence 445888899999999999988 7755543
No 101
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=21.51 E-value=1.6e+02 Score=26.93 Aligned_cols=47 Identities=11% Similarity=0.084 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeC
Q 013893 272 KTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKIS 318 (434)
Q Consensus 272 ~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v 318 (434)
++|.+++...++.+.+...++.++=....+.+.+...++|.-++-++
T Consensus 53 ~eE~~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~aL~~g~~~ind~ 99 (210)
T PF00809_consen 53 EEEMERLVPVLQAIREENPDVPLSIDTFNPEVAEAALKAGADIINDI 99 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHTSSEEEET
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCHHHHHHHHHcCcceEEec
Confidence 35667777777777764445555555555555555544455444443
Done!