BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013895
         (434 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1XDF|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
           Llpr-10.2a From Yellow Lupine
 pdb|1XDF|B Chain B, Crystal Structure Of Pathogenesis-Related Protein
           Llpr-10.2a From Yellow Lupine
          Length = 157

 Score = 30.0 bits (66), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 228 ARATDDGLYRAIDTYLKAHPE 248
           A+A  D  ++AI+ YL AHPE
Sbjct: 135 AKARGDAFFKAIENYLSAHPE 155


>pdb|2QIM|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
           Llpr-10.2b From Yellow Lupine In Complex With Cytokinin
 pdb|3E85|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
           Llpr-10.2b From Yellow Lupine In Complex With
           Diphenylurea
          Length = 158

 Score = 29.3 bits (64), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 10/21 (47%), Positives = 16/21 (76%)

Query: 228 ARATDDGLYRAIDTYLKAHPE 248
           A+A  D  ++AI++YL AHP+
Sbjct: 136 AKARGDAFFKAIESYLSAHPD 156


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,954,044
Number of Sequences: 62578
Number of extensions: 462753
Number of successful extensions: 1180
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1178
Number of HSP's gapped (non-prelim): 4
length of query: 434
length of database: 14,973,337
effective HSP length: 102
effective length of query: 332
effective length of database: 8,590,381
effective search space: 2852006492
effective search space used: 2852006492
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)