Query 013895
Match_columns 434
No_of_seqs 185 out of 372
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 08:28:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013895.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013895hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03000 NPH3: NPH3 family; I 100.0 1.2E-94 2.6E-99 702.9 23.6 246 21-271 1-258 (258)
2 PF14363 AAA_assoc: Domain ass 63.6 4.6 0.0001 34.3 1.8 42 224-266 30-71 (98)
3 PF04508 Pox_A_type_inc: Viral 62.8 10 0.00022 25.1 2.8 18 335-352 2-19 (23)
4 PF08581 Tup_N: Tup N-terminal 56.0 26 0.00057 29.3 5.0 30 329-358 34-63 (79)
5 PF07407 Seadorna_VP6: Seadorn 55.9 20 0.00042 37.7 5.0 26 326-351 38-63 (420)
6 KOG2016 NEDD8-activating compl 55.8 25 0.00054 38.4 6.0 62 190-251 343-434 (523)
7 KOG4571 Activating transcripti 52.7 25 0.00053 36.2 5.1 37 328-364 256-292 (294)
8 PF00170 bZIP_1: bZIP transcri 44.0 59 0.0013 25.3 5.0 25 332-356 38-62 (64)
9 PF01166 TSC22: TSC-22/dip/bun 42.9 46 0.00099 26.7 4.2 30 327-356 14-43 (59)
10 PHA03098 kelch-like protein; P 42.9 1.2E+02 0.0025 32.4 8.7 153 96-275 57-211 (534)
11 TIGR01834 PHA_synth_III_E poly 41.6 38 0.00082 35.3 4.6 30 333-362 288-317 (320)
12 PF10186 Atg14: UV radiation r 38.8 90 0.002 30.3 6.6 32 269-300 12-43 (302)
13 PF07106 TBPIP: Tat binding pr 38.4 63 0.0014 29.7 5.1 36 326-361 71-106 (169)
14 PF11853 DUF3373: Protein of u 38.0 24 0.00052 38.6 2.6 34 328-362 26-59 (489)
15 COG2433 Uncharacterized conser 37.7 50 0.0011 37.3 4.9 63 191-255 303-367 (652)
16 PF13764 E3_UbLigase_R4: E3 ub 37.0 22 0.00047 41.2 2.2 49 200-249 278-335 (802)
17 PF10929 DUF2811: Protein of u 36.6 26 0.00056 27.9 1.9 18 234-251 9-26 (57)
18 PF07716 bZIP_2: Basic region 35.2 90 0.002 23.6 4.7 30 331-360 22-51 (54)
19 PF15294 Leu_zip: Leucine zipp 34.2 69 0.0015 32.8 5.0 36 325-360 130-165 (278)
20 smart00338 BRLZ basic region l 34.0 85 0.0018 24.4 4.5 27 330-356 36-62 (65)
21 COG3510 CmcI Cephalosporin hyd 33.7 21 0.00047 35.2 1.3 37 219-255 181-219 (237)
22 KOG4603 TBP-1 interacting prot 33.2 90 0.0019 30.3 5.3 37 324-360 76-112 (201)
23 PF04977 DivIC: Septum formati 32.8 1.1E+02 0.0023 24.0 5.0 32 329-360 19-50 (80)
24 PF05529 Bap31: B-cell recepto 32.7 82 0.0018 29.5 5.0 35 328-362 155-189 (192)
25 PRK15322 invasion protein OrgB 30.8 1.6E+02 0.0036 29.0 6.7 83 165-247 89-204 (210)
26 PF08776 VASP_tetra: VASP tetr 30.0 1.1E+02 0.0024 22.9 4.1 22 335-356 4-26 (40)
27 TIGR02894 DNA_bind_RsfA transc 29.9 1E+02 0.0022 29.3 5.0 27 328-354 105-131 (161)
28 PF14077 WD40_alt: Alternative 29.0 34 0.00073 26.3 1.4 21 337-357 14-34 (48)
29 PF12017 Tnp_P_element: Transp 28.2 1E+02 0.0022 30.6 5.0 28 331-358 15-42 (236)
30 PF02183 HALZ: Homeobox associ 28.2 1.9E+02 0.0041 21.8 5.3 34 327-360 5-38 (45)
31 PHA01750 hypothetical protein 28.0 1E+02 0.0022 25.5 4.0 27 334-360 42-68 (75)
32 KOG4196 bZIP transcription fac 27.9 1.3E+02 0.0029 27.7 5.2 33 328-360 82-114 (135)
33 PF11123 DNA_Packaging_2: DNA 27.1 42 0.00091 28.4 1.7 16 233-248 31-46 (82)
34 PF13618 Gluconate_2-dh3: Gluc 27.0 66 0.0014 27.9 3.1 79 168-266 5-88 (131)
35 PF13815 Dzip-like_N: Iguana/D 26.2 2.5E+02 0.0055 24.5 6.7 53 282-356 64-116 (118)
36 PF04420 CHD5: CHD5-like prote 25.4 1.1E+02 0.0023 28.5 4.3 36 327-362 40-87 (161)
37 PF09789 DUF2353: Uncharacteri 23.9 1.1E+02 0.0023 32.0 4.4 37 324-360 76-112 (319)
38 PF04977 DivIC: Septum formati 23.7 1.9E+02 0.0041 22.6 4.9 37 326-362 23-62 (80)
39 PHA01750 hypothetical protein 23.7 1.6E+02 0.0035 24.4 4.5 34 326-359 41-74 (75)
40 PF08172 CASP_C: CASP C termin 23.1 1E+02 0.0022 30.9 3.9 23 336-358 88-110 (248)
41 PF10932 DUF2783: Protein of u 22.6 64 0.0014 26.0 2.0 20 233-255 11-30 (60)
42 COG3937 Uncharacterized conser 22.1 95 0.0021 27.7 3.1 27 331-357 80-106 (108)
43 PF07707 BACK: BTB And C-termi 21.8 59 0.0013 26.2 1.7 59 211-270 39-97 (103)
44 PF12029 DUF3516: Domain of un 21.5 49 0.0011 36.0 1.5 50 211-261 197-248 (461)
45 PF06156 DUF972: Protein of un 21.2 86 0.0019 27.6 2.7 22 327-348 36-57 (107)
46 PF06005 DUF904: Protein of un 20.7 1.3E+02 0.0028 24.7 3.5 39 328-366 19-57 (72)
47 PF07989 Microtub_assoc: Micro 20.5 2.1E+02 0.0045 23.7 4.6 32 327-358 43-74 (75)
No 1
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=100.00 E-value=1.2e-94 Score=702.90 Aligned_cols=246 Identities=52% Similarity=0.843 Sum_probs=223.8
Q ss_pred CCChHHHhhccChhHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCCccccccccCCCCCCCCCcccchhhhhhHHHHHH
Q 013895 21 AECWFDDACILDMDYFVKTISGIKAKGVRPDLIGSIIAHYASKWLPDLAYEDANKGLTNFEESPESVTASWMKKRFFVET 100 (434)
Q Consensus 21 ~dWW~eDl~~L~id~f~rvI~amkskg~~~~~I~~~L~~YA~kwLp~~~~~~~~~~~~~~~~~~~s~~~~~~~qR~llEt 100 (434)
+|||||||+.|++|+|+|||.||+++||+|++||++|+|||+||||++.+..... .......+..+.+||.+|||
T Consensus 1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~-----~~~~~~~~~~~~~~r~llEt 75 (258)
T PF03000_consen 1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGS-----SSSAESSTSSENEQRELLET 75 (258)
T ss_pred CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcccccccc-----cccccccchhHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999985432111 11122245567899999999
Q ss_pred HHhhcCCCCCCccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHh
Q 013895 101 LVGILPPEKDSLPCNFFLRLLRTANMVNVEPAYREELEKRISWQLDQASLKELMIPSFSHTCGTLLDVELVSRLVKKFVH 180 (434)
Q Consensus 101 iV~lLP~ek~svsc~FLf~LLR~A~~l~as~~cr~~LEkRIg~QLdqAtLdDLLIPs~~~~~~tlYDVdlV~Ril~~Fl~ 180 (434)
||+|||.++++|||+|||+|||+|+++|+|++||.+||+|||.|||||||+|||||+.+...+|+||||+|+|||++||.
T Consensus 76 iV~lLP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~t~yDVd~V~riv~~Fl~ 155 (258)
T PF03000_consen 76 IVSLLPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGEDTLYDVDLVQRIVEHFLS 155 (258)
T ss_pred HHHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcccchhhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999933344599999999999999999
Q ss_pred cccc------------CccchhHHHHHHHHHHhHHHHhcCCCCCChhHHHHHHhhcCCccccccchhHHHHHHHHHhCCC
Q 013895 181 LDIE------------GAKSGAALVKVAKLVDCYLAEAAMDSNLSLSEFVALAGALPSHARATDDGLYRAIDTYLKAHPE 248 (434)
Q Consensus 181 ~~~~------------~~~~~~~l~kVakLvD~YLaEIA~D~nL~~sKF~~LAealPd~AR~~hDgLYRAIDiYLKaHp~ 248 (434)
+++. ...+..++.+||||||+||+|||+|+||+|+||++|||+||++||++|||||||||+|||+||+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp~ 235 (258)
T PF03000_consen 156 QEEEAGEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKAHPG 235 (258)
T ss_pred cccccccccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHHccc
Confidence 8421 1135689999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHhhhhhccccccCCCCHHHh
Q 013895 249 VTKQERKSLCRLIDSRKLSPEAS 271 (434)
Q Consensus 249 lse~Er~~lC~~ldc~KLS~eAc 271 (434)
||++||++||++|||+|||+|||
T Consensus 236 ls~~Er~~lC~~ldc~KLS~EAC 258 (258)
T PF03000_consen 236 LSEEERKRLCRLLDCQKLSPEAC 258 (258)
T ss_pred CCHHHHHHHHhhCCcccCCcccC
Confidence 99999999999999999999999
No 2
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=63.58 E-value=4.6 Score=34.35 Aligned_cols=42 Identities=21% Similarity=0.383 Sum_probs=32.4
Q ss_pred cCCccccccchhHHHHHHHHHhCCCCcHHhhhhhccccccCCC
Q 013895 224 LPSHARATDDGLYRAIDTYLKAHPEVTKQERKSLCRLIDSRKL 266 (434)
Q Consensus 224 lPd~AR~~hDgLYRAIDiYLKaHp~lse~Er~~lC~~ldc~KL 266 (434)
+|++.......||+|+.+||.+....+. .|-++++.-|.+.+
T Consensus 30 I~E~~g~~~N~ly~a~~~YL~s~~s~~a-~rL~~~~~~~~~~~ 71 (98)
T PF14363_consen 30 IPEFDGLSRNELYDAAQAYLSSKISPSA-RRLKASKSKNSKNL 71 (98)
T ss_pred EEeCCCccccHHHHHHHHHHhhccCccc-ceeeecccCCCCce
Confidence 4555557788999999999999987765 77788877766653
No 3
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=62.77 E-value=10 Score=25.10 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013895 335 EIRKLREEVLRLQSQCNA 352 (434)
Q Consensus 335 e~~~mr~rv~eLe~~c~~ 352 (434)
||+++|.|+.+||++...
T Consensus 2 E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSE 19 (23)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 789999999999998764
No 4
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=55.97 E-value=26 Score=29.33 Aligned_cols=30 Identities=27% Similarity=0.467 Sum_probs=26.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013895 329 VGAQQMEIRKLREEVLRLQSQCNAMQVQIE 358 (434)
Q Consensus 329 ~~~l~~e~~~mr~rv~eLe~~c~~mq~~~e 358 (434)
...+-.||+.+|..|.+||.....||+++|
T Consensus 34 i~~Qi~Em~~ir~~v~eLE~~h~kmK~~YE 63 (79)
T PF08581_consen 34 INSQIQEMQQIRQKVYELEQAHRKMKQQYE 63 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667999999999999999999999977
No 5
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=55.88 E-value=20 Score=37.73 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=22.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHH
Q 013895 326 KREVGAQQMEIRKLREEVLRLQSQCN 351 (434)
Q Consensus 326 ~re~~~l~~e~~~mr~rv~eLe~~c~ 351 (434)
..||..||.|++.+|.+|++||.+..
T Consensus 38 r~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 38 RMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 46888999999999999999987655
No 6
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=55.81 E-value=25 Score=38.36 Aligned_cols=62 Identities=21% Similarity=0.288 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHhHHHHhcCCCC----------------CChhHHHHHHhhcCCccc-----cccch---------hHHHH
Q 013895 190 AALVKVAKLVDCYLAEAAMDSN----------------LSLSEFVALAGALPSHAR-----ATDDG---------LYRAI 239 (434)
Q Consensus 190 ~~l~kVakLvD~YLaEIA~D~n----------------L~~sKF~~LAealPd~AR-----~~hDg---------LYRAI 239 (434)
.-...|.+.+-.+|-+++.+|. |++-.|..|++-.-++.+ .+.|. +|||+
T Consensus 343 ~D~~~v~~~v~~vlk~lgr~~~sIs~~~ik~fCkna~~lkv~r~~~~~eey~~s~~~~~~~~~~e~~~~~~~~~~~lRav 422 (523)
T KOG2016|consen 343 ADALEVERRVQEVLKSLGRSPDSISDDVIKLFCKNAAKLKVCRGRTLAEEYEKSITELIKYSSNENYSNEIGFYLLLRAV 422 (523)
T ss_pred hhHHHHHHHHHHHHHHhCCCccccCHHHHHHHHhhhhcceeeecchhhhhhcccchhhhhhccccccchhHHHHHHHHHH
Confidence 3566899999999999999854 566666667776544434 33334 79999
Q ss_pred HHHHHhCCCCcH
Q 013895 240 DTYLKAHPEVTK 251 (434)
Q Consensus 240 DiYLKaHp~lse 251 (434)
|.||+.|-....
T Consensus 423 drfl~~~gk~pG 434 (523)
T KOG2016|consen 423 DRFLKEKGKYPG 434 (523)
T ss_pred HHHHHHhcCCCC
Confidence 999998877655
No 7
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=52.72 E-value=25 Score=36.20 Aligned_cols=37 Identities=14% Similarity=0.255 Sum_probs=29.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013895 328 EVGAQQMEIRKLREEVLRLQSQCNAMQVQIEKLVEKK 364 (434)
Q Consensus 328 e~~~l~~e~~~mr~rv~eLe~~c~~mq~~~ekl~~~k 364 (434)
|...|...++.+|.++.+||+|...||+-|.-.-++|
T Consensus 256 e~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~~r 292 (294)
T KOG4571|consen 256 ELEGLEKRNEELKDQASELEREIRYLKQLILEVYKKR 292 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4446677799999999999999999999887554433
No 8
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=44.00 E-value=59 Score=25.31 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 013895 332 QQMEIRKLREEVLRLQSQCNAMQVQ 356 (434)
Q Consensus 332 l~~e~~~mr~rv~eLe~~c~~mq~~ 356 (434)
|..+++.|+.++..|+.+|..|+.+
T Consensus 38 L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 38 LESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444444444444443
No 9
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=42.91 E-value=46 Score=26.75 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=24.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013895 327 REVGAQQMEIRKLREEVLRLQSQCNAMQVQ 356 (434)
Q Consensus 327 re~~~l~~e~~~mr~rv~eLe~~c~~mq~~ 356 (434)
.|.+.||..|..+..++.+||.|+.-+|+.
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567788888888888888888888887764
No 10
>PHA03098 kelch-like protein; Provisional
Probab=42.87 E-value=1.2e+02 Score=32.42 Aligned_cols=153 Identities=13% Similarity=0.081 Sum_probs=82.3
Q ss_pred HHHHHHHhhcCCCCCCccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhcccCcccccccCCCCCCCccccHHHHHHHH
Q 013895 96 FFVETLVGILPPEKDSLPCNFFLRLLRTANMVNVEPAYREELEKRISWQLDQASLKELMIPSFSHTCGTLLDVELVSRLV 175 (434)
Q Consensus 96 ~llEtiV~lLP~ek~svsc~FLf~LLR~A~~l~as~~cr~~LEkRIg~QLdqAtLdDLLIPs~~~~~~tlYDVdlV~Ril 175 (434)
..++.|+..+-..+-.++..-+..||.+|..+.+.. .+..=|+.+...|+..+.-+++--+..|....|++
T Consensus 57 ~~~~~~l~y~Ytg~~~i~~~~~~~ll~~A~~l~~~~-l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~-------- 127 (534)
T PHA03098 57 DSFNEVIKYIYTGKINITSNNVKDILSIANYLIIDF-LINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYS-------- 127 (534)
T ss_pred HHHHHHHHHhcCCceEEcHHHHHHHHHHHHHhCcHH-HHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHH--------
Confidence 489999999988887788888999999999999875 33333333334444333323322111111111111
Q ss_pred HHHHhccccCccchhHHHHHHHHHHhHHHHhcCCCCCChhHHHHHHhhcCCccc--cccchhHHHHHHHHHhCCCCcHHh
Q 013895 176 KKFVHLDIEGAKSGAALVKVAKLVDCYLAEAAMDSNLSLSEFVALAGALPSHAR--ATDDGLYRAIDTYLKAHPEVTKQE 253 (434)
Q Consensus 176 ~~Fl~~~~~~~~~~~~l~kVakLvD~YLaEIA~D~nL~~sKF~~LAealPd~AR--~~hDgLYRAIDiYLKaHp~lse~E 253 (434)
..-..|.....++..++.+.--.+..|...|.+..= ...+.+|.||-.+++.++.--...
T Consensus 128 ------------------~~~~~i~~nf~~v~~~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~~~~~~~r~~~ 189 (534)
T PHA03098 128 ------------------AAYNYIRNNIELIYNDPDFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTSKKNNKYKD 189 (534)
T ss_pred ------------------HHHHHHHHHHHHHhcCchhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHHHHHhcChhhhHhH
Confidence 111233333344554433222223444444544332 246789999999998776333222
Q ss_pred hhhhccccccCCCCHHHhHHHH
Q 013895 254 RKSLCRLIDSRKLSPEASLHAA 275 (434)
Q Consensus 254 r~~lC~~ldc~KLS~eAc~HAa 275 (434)
-.+|-+.+-..-|+++-.....
T Consensus 190 ~~~ll~~vR~~~~~~~~l~~~~ 211 (534)
T PHA03098 190 ICLILKVLRITFLSEEGIKKLK 211 (534)
T ss_pred HHHHHhhccccccCHHHHHHHH
Confidence 2345555555555555554443
No 11
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=41.65 E-value=38 Score=35.27 Aligned_cols=30 Identities=10% Similarity=0.329 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013895 333 QMEIRKLREEVLRLQSQCNAMQVQIEKLVE 362 (434)
Q Consensus 333 ~~e~~~mr~rv~eLe~~c~~mq~~~ekl~~ 362 (434)
|.||+.+..||.|||++...|+++++.+.+
T Consensus 288 RsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 288 RSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 458999999999999999999999998743
No 12
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=38.80 E-value=90 Score=30.25 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=26.5
Q ss_pred HHhHHHHhCCCCchHHHHHHHHHHHHhhhhhh
Q 013895 269 EASLHAAQNDRLPVRAVIQVLFSEQAKLNKQL 300 (434)
Q Consensus 269 eAc~HAaQNeRlPlR~vVQvLf~eQ~~lr~~i 300 (434)
=.|.|.++|.-+.++.-++-+..+.-.++..+
T Consensus 12 ~~C~~C~~~~L~~~~~~l~~~~~~~~~l~~~i 43 (302)
T PF10186_consen 12 FYCANCVNNRLLELRSELQQLKEENEELRRRI 43 (302)
T ss_pred eECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999988888999998888888887665
No 13
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=38.45 E-value=63 Score=29.72 Aligned_cols=36 Identities=25% Similarity=0.502 Sum_probs=27.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013895 326 KREVGAQQMEIRKLREEVLRLQSQCNAMQVQIEKLV 361 (434)
Q Consensus 326 ~re~~~l~~e~~~mr~rv~eLe~~c~~mq~~~ekl~ 361 (434)
..|...+..++..++.++.+|+.+|+.++.++..+.
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~ 106 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLS 106 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667777788888888888888888888877763
No 14
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=38.00 E-value=24 Score=38.64 Aligned_cols=34 Identities=18% Similarity=0.403 Sum_probs=26.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013895 328 EVGAQQMEIRKLREEVLRLQSQCNAMQVQIEKLVE 362 (434)
Q Consensus 328 e~~~l~~e~~~mr~rv~eLe~~c~~mq~~~ekl~~ 362 (434)
|...+| +|+.|+.+|.+||++...|+.+++|.-+
T Consensus 26 ~~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 26 DIDLLQ-KIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred hhHHHH-HHHHHHHHHHHHHHhhcccccccchhhH
Confidence 444555 8999999999999999988888887633
No 15
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=37.66 E-value=50 Score=37.27 Aligned_cols=63 Identities=29% Similarity=0.338 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhHHHHhcCCCCCChhHHHHHHhhcCCcccccc--chhHHHHHHHHHhCCCCcHHhhh
Q 013895 191 ALVKVAKLVDCYLAEAAMDSNLSLSEFVALAGALPSHARATD--DGLYRAIDTYLKAHPEVTKQERK 255 (434)
Q Consensus 191 ~l~kVakLvD~YLaEIA~D~nL~~sKF~~LAealPd~AR~~h--DgLYRAIDiYLKaHp~lse~Er~ 255 (434)
...++|.-++.-|. -||..|++++=+.+-...+-+....| |.|=-|+..|+.--|.|..-||+
T Consensus 303 ~V~KiAasf~A~ly--~P~~dLsveEK~~~~r~~~~~~~ddH~RDALAAA~kAY~~yk~kl~~vEr~ 367 (652)
T COG2433 303 TVKKIAASFNAVLY--TPDRDLSVEEKQEALRTLKISVSDDHERDALAAAYKAYLAYKPKLEKVERK 367 (652)
T ss_pred HHHHHHHHcCCccc--CCcccCCHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555554442 46777777777776666676666666 88988999999887877777775
No 16
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=36.96 E-value=22 Score=41.15 Aligned_cols=49 Identities=29% Similarity=0.542 Sum_probs=34.4
Q ss_pred HhHHHHhcCCCCCChhHHHHHHhhcCCcc--c-----cccchhHH-HHHHHHH-hCCCC
Q 013895 200 DCYLAEAAMDSNLSLSEFVALAGALPSHA--R-----ATDDGLYR-AIDTYLK-AHPEV 249 (434)
Q Consensus 200 D~YLaEIA~D~nL~~sKF~~LAealPd~A--R-----~~hDgLYR-AIDiYLK-aHp~l 249 (434)
|.|=.+..+|..+.+..|..+++++|.++ . ..+=|++. |++ ||. .+|.+
T Consensus 278 ~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~-YL~~~~P~~ 335 (802)
T PF13764_consen 278 DKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAID-YLLKHFPSL 335 (802)
T ss_pred hhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHH-HHHHhCccc
Confidence 44444566667789999999999999887 2 23456666 888 665 55654
No 17
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=36.61 E-value=26 Score=27.94 Aligned_cols=18 Identities=22% Similarity=0.591 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHhCCCCcH
Q 013895 234 GLYRAIDTYLKAHPEVTK 251 (434)
Q Consensus 234 gLYRAIDiYLKaHp~lse 251 (434)
-||.|+..||+.||+-..
T Consensus 9 ~L~~~m~~fie~hP~WDQ 26 (57)
T PF10929_consen 9 DLHQAMKDFIETHPNWDQ 26 (57)
T ss_pred HHHHHHHHHHHcCCCchH
Confidence 599999999999998654
No 18
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=35.18 E-value=90 Score=23.63 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013895 331 AQQMEIRKLREEVLRLQSQCNAMQVQIEKL 360 (434)
Q Consensus 331 ~l~~e~~~mr~rv~eLe~~c~~mq~~~ekl 360 (434)
.-+..++.|..+|..|+.+...|+++++.|
T Consensus 22 rkk~~~~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 22 RKKQREEELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888888888888888888888776
No 19
>PF15294 Leu_zip: Leucine zipper
Probab=34.16 E-value=69 Score=32.80 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=30.3
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013895 325 SKREVGAQQMEIRKLREEVLRLQSQCNAMQVQIEKL 360 (434)
Q Consensus 325 ~~re~~~l~~e~~~mr~rv~eLe~~c~~mq~~~ekl 360 (434)
-..|+..|+.|++++|.|+..+|++|..+-.+-.++
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl 165 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKL 165 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999886554444
No 20
>smart00338 BRLZ basic region leucin zipper.
Probab=34.04 E-value=85 Score=24.43 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=13.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013895 330 GAQQMEIRKLREEVLRLQSQCNAMQVQ 356 (434)
Q Consensus 330 ~~l~~e~~~mr~rv~eLe~~c~~mq~~ 356 (434)
..|..+++.|+.+|..|+.++..++.+
T Consensus 36 ~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 36 EQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555444
No 21
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=33.65 E-value=21 Score=35.20 Aligned_cols=37 Identities=22% Similarity=0.408 Sum_probs=27.8
Q ss_pred HHHhhcC--CccccccchhHHHHHHHHHhCCCCcHHhhh
Q 013895 219 ALAGALP--SHARATDDGLYRAIDTYLKAHPEVTKQERK 255 (434)
Q Consensus 219 ~LAealP--d~AR~~hDgLYRAIDiYLKaHp~lse~Er~ 255 (434)
.+.+-+| +..+..-+|=|+||..||+.||+==|.++.
T Consensus 181 s~v~dlp~~~~p~~~g~gP~~AVe~ylr~~p~~yEiD~~ 219 (237)
T COG3510 181 SNVNDLPGPVLPWRFGGGPYEAVEAYLREFPQDYEIDTS 219 (237)
T ss_pred ccccCCCCcccchhcCCChHHHHHHHHHhCCcccccchh
Confidence 3445567 556667899999999999999975555543
No 22
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=33.18 E-value=90 Score=30.25 Aligned_cols=37 Identities=30% Similarity=0.459 Sum_probs=28.0
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013895 324 LSKREVGAQQMEIRKLREEVLRLQSQCNAMQVQIEKL 360 (434)
Q Consensus 324 ~~~re~~~l~~e~~~mr~rv~eLe~~c~~mq~~~ekl 360 (434)
++..|.+.|..+|..+.++|..|+..|+.|-.+|.-|
T Consensus 76 ~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L 112 (201)
T KOG4603|consen 76 VSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKEL 112 (201)
T ss_pred CChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677778888888888888888888887777665
No 23
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=32.79 E-value=1.1e+02 Score=24.04 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=20.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013895 329 VGAQQMEIRKLREEVLRLQSQCNAMQVQIEKL 360 (434)
Q Consensus 329 ~~~l~~e~~~mr~rv~eLe~~c~~mq~~~ekl 360 (434)
...++.++..++.++.+++.+-..++++++++
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555566666666666666666666666666
No 24
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=32.70 E-value=82 Score=29.52 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=26.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013895 328 EVGAQQMEIRKLREEVLRLQSQCNAMQVQIEKLVE 362 (434)
Q Consensus 328 e~~~l~~e~~~mr~rv~eLe~~c~~mq~~~ekl~~ 362 (434)
++..+..|++.++.++.+-|.+...||+|.+.+.+
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566778888888888888888888888887643
No 25
>PRK15322 invasion protein OrgB; Provisional
Probab=30.78 E-value=1.6e+02 Score=29.03 Aligned_cols=83 Identities=17% Similarity=0.107 Sum_probs=57.0
Q ss_pred cccHHHHHHHHHHHHhccccCcc-----chhHHHHHHHHHHhHHHHhcCCC--------------------CCChhHHHH
Q 013895 165 LLDVELVSRLVKKFVHLDIEGAK-----SGAALVKVAKLVDCYLAEAAMDS--------------------NLSLSEFVA 219 (434)
Q Consensus 165 lYDVdlV~Ril~~Fl~~~~~~~~-----~~~~l~kVakLvD~YLaEIA~D~--------------------nL~~sKF~~ 219 (434)
+-|+|...++++.|+..-..... -...-...+.=+-.||.|..+++ ..+|..|++
T Consensus 89 Ld~pd~LL~~le~Wl~~l~~~~~pL~l~lP~~ak~~~~~L~~~l~e~w~~~~~i~yhd~~rFV~~~g~qIaEFsPq~~v~ 168 (210)
T PRK15322 89 VDHPETLLTVLDEWLRDFDKPEGQLFLTLPVNAKKDHQKLMVLLMENWPGTFNLKYHQEQRFIMSCGDQIAEFSPEQFVE 168 (210)
T ss_pred ccCHHHHHHHHHHHHHhCccccCceeEecChhhhhhHHHHHHHHHHhcCCCeEEEEcCCCceEEEeCCchhccCHHHHHH
Confidence 44788999999999985433211 12334455666677888866544 378999999
Q ss_pred HHhh--------cCCccccccchhHHHHHHHHHhCC
Q 013895 220 LAGA--------LPSHARATDDGLYRAIDTYLKAHP 247 (434)
Q Consensus 220 LAea--------lPd~AR~~hDgLYRAIDiYLKaHp 247 (434)
.|+. +|.-+|...||=-.|.=-|||.|-
T Consensus 169 ~a~~~l~~~~d~~~~~~r~ls~~~l~al~~~~~~~~ 204 (210)
T PRK15322 169 TAVGVIKHHLDELPQDCRTISDNAINALIDEWKTKT 204 (210)
T ss_pred HHHHHHHhCccchHHHHHHHhHHHHHHHHHHHHHhc
Confidence 9986 566777777777777766777763
No 26
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=30.00 E-value=1.1e+02 Score=22.88 Aligned_cols=22 Identities=14% Similarity=0.530 Sum_probs=11.6
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHH
Q 013895 335 EIRKLREEVL-RLQSQCNAMQVQ 356 (434)
Q Consensus 335 e~~~mr~rv~-eLe~~c~~mq~~ 356 (434)
++++|+.++. |+.+|...||++
T Consensus 4 dle~~KqEIL~EvrkEl~K~K~E 26 (40)
T PF08776_consen 4 DLERLKQEILEEVRKELQKVKEE 26 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555543 355555555555
No 27
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=29.89 E-value=1e+02 Score=29.29 Aligned_cols=27 Identities=11% Similarity=0.131 Sum_probs=12.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 013895 328 EVGAQQMEIRKLREEVLRLQSQCNAMQ 354 (434)
Q Consensus 328 e~~~l~~e~~~mr~rv~eLe~~c~~mq 354 (434)
|+..|+.++..++.++..||++...++
T Consensus 105 e~~~l~~e~~~l~~~~e~Le~e~~~L~ 131 (161)
T TIGR02894 105 ENERLKNQNESLQKRNEELEKELEKLR 131 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555445554444444444443
No 28
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=29.03 E-value=34 Score=26.32 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013895 337 RKLREEVLRLQSQCNAMQVQI 357 (434)
Q Consensus 337 ~~mr~rv~eLe~~c~~mq~~~ 357 (434)
+.+|.||.|||.|.+.+++-=
T Consensus 14 e~l~vrv~eLEeEV~~LrKIN 34 (48)
T PF14077_consen 14 EQLRVRVSELEEEVRTLRKIN 34 (48)
T ss_pred chheeeHHHHHHHHHHHHHHh
Confidence 567899999999999887643
No 29
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=28.21 E-value=1e+02 Score=30.64 Aligned_cols=28 Identities=21% Similarity=0.495 Sum_probs=16.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013895 331 AQQMEIRKLREEVLRLQSQCNAMQVQIE 358 (434)
Q Consensus 331 ~l~~e~~~mr~rv~eLe~~c~~mq~~~e 358 (434)
.++.|+..|+.++.+||++...++++++
T Consensus 15 ~~~~e~~~Lk~kir~le~~l~~Lk~~l~ 42 (236)
T PF12017_consen 15 TLKIENKKLKKKIRRLEKELKKLKQKLE 42 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666555543
No 30
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=28.20 E-value=1.9e+02 Score=21.76 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=25.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013895 327 REVGAQQMEIRKLREEVLRLQSQCNAMQVQIEKL 360 (434)
Q Consensus 327 re~~~l~~e~~~mr~rv~eLe~~c~~mq~~~ekl 360 (434)
++-..|+..-+.++.+...|.++-..++.++..+
T Consensus 5 ~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 5 RDYDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777777777777777777777766
No 31
>PHA01750 hypothetical protein
Probab=27.99 E-value=1e+02 Score=25.53 Aligned_cols=27 Identities=22% Similarity=0.443 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013895 334 MEIRKLREEVLRLQSQCNAMQVQIEKL 360 (434)
Q Consensus 334 ~e~~~mr~rv~eLe~~c~~mq~~~ekl 360 (434)
.|+++++.+++++.....+++++++.+
T Consensus 42 ~ELdNL~~ei~~~kikqDnl~~qv~ei 68 (75)
T PHA01750 42 SELDNLKTEIEELKIKQDELSRQVEEI 68 (75)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 345555555555554444455554443
No 32
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=27.88 E-value=1.3e+02 Score=27.72 Aligned_cols=33 Identities=33% Similarity=0.441 Sum_probs=23.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013895 328 EVGAQQMEIRKLREEVLRLQSQCNAMQVQIEKL 360 (434)
Q Consensus 328 e~~~l~~e~~~mr~rv~eLe~~c~~mq~~~ekl 360 (434)
++..|..+++.|+.++++|..|....+...+++
T Consensus 82 ~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l 114 (135)
T KOG4196|consen 82 EKAELQQQVEKLKEENSRLRRELDAYKSKYEAL 114 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444666777777777777777777777777776
No 33
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=27.10 E-value=42 Score=28.39 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=14.5
Q ss_pred chhHHHHHHHHHhCCC
Q 013895 233 DGLYRAIDTYLKAHPE 248 (434)
Q Consensus 233 DgLYRAIDiYLKaHp~ 248 (434)
-.||-||+.||..|..
T Consensus 31 PQLYnAI~k~L~RHkF 46 (82)
T PF11123_consen 31 PQLYNAIGKLLDRHKF 46 (82)
T ss_pred hHHHHHHHHHHHHccc
Confidence 4799999999999986
No 34
>PF13618 Gluconate_2-dh3: Gluconate 2-dehydrogenase subunit 3
Probab=26.97 E-value=66 Score=27.88 Aligned_cols=79 Identities=23% Similarity=0.405 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhccccCccchhHHHHHHHHHHhHHHHhcCCCCCChhHHHHHHhhcCCccccccchhHHHHHHHHH---
Q 013895 168 VELVSRLVKKFVHLDIEGAKSGAALVKVAKLVDCYLAEAAMDSNLSLSEFVALAGALPSHARATDDGLYRAIDTYLK--- 244 (434)
Q Consensus 168 VdlV~Ril~~Fl~~~~~~~~~~~~l~kVakLvD~YLaEIA~D~nL~~sKF~~LAealPd~AR~~hDgLYRAIDiYLK--- 244 (434)
..++..|++..+=.++. .++.-..|+..||.||+. ...|+..+..-+|| .++|-+-+
T Consensus 5 ~~~L~ai~~~iiP~~~~---pgA~~~~v~~fId~~l~~----------------~~~~~~~~~~~~gl-~~ld~~a~~~~ 64 (131)
T PF13618_consen 5 AATLAAIADTIIPADDT---PGASDAGVPEFIDRMLAD----------------CYMPEDRRAFRAGL-AALDAYAQKRY 64 (131)
T ss_pred HHHHHHHHHHhcCCCCC---CChhhcChHHHHHHHHhc----------------CCCHHHHHHHHHHH-HHHHHHHHHHh
Confidence 34566666666644321 244556799999999988 22233444555555 56666653
Q ss_pred --hCCCCcHHhhhhhccccccCCC
Q 013895 245 --AHPEVTKQERKSLCRLIDSRKL 266 (434)
Q Consensus 245 --aHp~lse~Er~~lC~~ldc~KL 266 (434)
.-..|+.++|..|-.-|.-.+.
T Consensus 65 g~~F~~l~~~~~~~lL~~~~~~~~ 88 (131)
T PF13618_consen 65 GKSFAELSPAQREALLDALEKSEA 88 (131)
T ss_pred CCChhhCCHHHHHHHHHHHHhccc
Confidence 3356999999988776665554
No 35
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=26.25 E-value=2.5e+02 Score=24.55 Aligned_cols=53 Identities=21% Similarity=0.313 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHhhhhhhccCCCCCCCCCCCCCCCCcchhccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013895 282 VRAVIQVLFSEQAKLNKQLDWSGSFSGIRSPNIGFDPSAARCLSKREVGAQQMEIRKLREEVLRLQSQCNAMQVQ 356 (434)
Q Consensus 282 lR~vVQvLf~eQ~~lr~~i~~~g~~~~~~~~~~~~~~~~~~~~~~re~~~l~~e~~~mr~rv~eLe~~c~~mq~~ 356 (434)
+++.+|=|+.-|-.|-..+. ....+.+.+..++++++..+.+++.++..+|++
T Consensus 64 aQl~ieYLl~~q~~L~~~~~----------------------~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 64 AQLSIEYLLHCQEYLSSQLE----------------------QLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45777777777766654431 001233445555666666666666666665554
No 36
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=25.36 E-value=1.1e+02 Score=28.46 Aligned_cols=36 Identities=25% Similarity=0.382 Sum_probs=22.7
Q ss_pred hhhhhhhHHHHHHHHHHHH------------HHHHHHHHHHHHHHhhh
Q 013895 327 REVGAQQMEIRKLREEVLR------------LQSQCNAMQVQIEKLVE 362 (434)
Q Consensus 327 re~~~l~~e~~~mr~rv~e------------Le~~c~~mq~~~ekl~~ 362 (434)
++...++.|+..++.++.. |++++..+..|++++.+
T Consensus 40 ~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~ 87 (161)
T PF04420_consen 40 KEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNK 87 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666655543 67777777777776643
No 37
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=23.91 E-value=1.1e+02 Score=32.00 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=32.8
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013895 324 LSKREVGAQQMEIRKLREEVLRLQSQCNAMQVQIEKL 360 (434)
Q Consensus 324 ~~~re~~~l~~e~~~mr~rv~eLe~~c~~mq~~~ekl 360 (434)
-+..+|..|+.|++.+|.++.|++.+|.-++..+.+.
T Consensus 76 ~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 76 ESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 4456788999999999999999999999999988875
No 38
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=23.66 E-value=1.9e+02 Score=22.58 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=28.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHhhh
Q 013895 326 KREVGAQQMEIRKLREEVLRLQSQCNAM---QVQIEKLVE 362 (434)
Q Consensus 326 ~re~~~l~~e~~~mr~rv~eLe~~c~~m---q~~~ekl~~ 362 (434)
..+...++.+++.++.+..+|+.+...+ ...+++..+
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3567788888888999999999888888 344666654
No 39
>PHA01750 hypothetical protein
Probab=23.65 E-value=1.6e+02 Score=24.39 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=29.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013895 326 KREVGAQQMEIRKLREEVLRLQSQCNAMQVQIEK 359 (434)
Q Consensus 326 ~re~~~l~~e~~~mr~rv~eLe~~c~~mq~~~ek 359 (434)
..|...|+.|++..+.+..+||.+..++++.++|
T Consensus 41 ~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~dk 74 (75)
T PHA01750 41 NSELDNLKTEIEELKIKQDELSRQVEEIKRKLDK 74 (75)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcc
Confidence 3577789999999999999999999999887765
No 40
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=23.14 E-value=1e+02 Score=30.89 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013895 336 IRKLREEVLRLQSQCNAMQVQIE 358 (434)
Q Consensus 336 ~~~mr~rv~eLe~~c~~mq~~~e 358 (434)
=|+.|.|+.|||.|.+..++++.
T Consensus 88 RDRFR~Rn~ELE~elr~~~~~~~ 110 (248)
T PF08172_consen 88 RDRFRQRNAELEEELRKQQQTIS 110 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666655555544444
No 41
>PF10932 DUF2783: Protein of unknown function (DUF2783); InterPro: IPR021233 This is a bacterial family of uncharacterised protein.
Probab=22.63 E-value=64 Score=26.02 Aligned_cols=20 Identities=25% Similarity=0.579 Sum_probs=17.4
Q ss_pred chhHHHHHHHHHhCCCCcHHhhh
Q 013895 233 DGLYRAIDTYLKAHPEVTKQERK 255 (434)
Q Consensus 233 DgLYRAIDiYLKaHp~lse~Er~ 255 (434)
|+.|.+ .+.+|.+||++|-.
T Consensus 11 D~fY~~---Li~aH~gLs~e~S~ 30 (60)
T PF10932_consen 11 DDFYEA---LIEAHRGLSDEQSA 30 (60)
T ss_pred hHHHHH---HHHHHhCCCHHHHH
Confidence 999998 58899999998854
No 42
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=22.09 E-value=95 Score=27.72 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=20.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013895 331 AQQMEIRKLREEVLRLQSQCNAMQVQI 357 (434)
Q Consensus 331 ~l~~e~~~mr~rv~eLe~~c~~mq~~~ 357 (434)
..+.+|+.++.||.+||++...++.++
T Consensus 80 ~r~~~~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 80 ARQSEMDELTERVDALERQVADLENKL 106 (108)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 335577888888888888888877665
No 43
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=21.79 E-value=59 Score=26.24 Aligned_cols=59 Identities=24% Similarity=0.414 Sum_probs=41.1
Q ss_pred CCChhHHHHHHhhcCCccccccchhHHHHHHHHHhCCCCcHHhhhhhccccccCCCCHHH
Q 013895 211 NLSLSEFVALAGALPSHARATDDGLYRAIDTYLKAHPEVTKQERKSLCRLIDSRKLSPEA 270 (434)
Q Consensus 211 nL~~sKF~~LAealPd~AR~~hDgLYRAIDiYLKaHp~lse~Er~~lC~~ldc~KLS~eA 270 (434)
+|++..+..+-.. ++-.-.+.|.+|.||-.|++.++.-.+..-..|.+.+...-||++-
T Consensus 39 ~L~~~~l~~iL~~-~~l~v~~E~~v~~av~~W~~~~~~~r~~~~~~Ll~~iR~~~l~~~~ 97 (103)
T PF07707_consen 39 ELPFDQLIEILSS-DDLNVSSEDDVFEAVLRWLKHNPENREEHLKELLSCIRFPLLSPEE 97 (103)
T ss_dssp CS-HHHHHHHHHT-SS--ECTCCCHHHHHHHHHHCTHHHHTTTHHHHHCCCHHHCT-HHH
T ss_pred cCCHHHHHHHHhc-cccccccHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCCcccCCHHH
Confidence 5888888887775 5554568899999999999998865555556666766666666653
No 44
>PF12029 DUF3516: Domain of unknown function (DUF3516); InterPro: IPR021904 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 460 to 473 amino acids in length. This domain is found associated with PF00270 from PFAM, PF00271 from PFAM.
Probab=21.52 E-value=49 Score=36.01 Aligned_cols=50 Identities=24% Similarity=0.274 Sum_probs=35.8
Q ss_pred CCChhHHHHHHhhcCCccccccchhHHHHHHHHHhCCCCcHHhh--hhhcccc
Q 013895 211 NLSLSEFVALAGALPSHARATDDGLYRAIDTYLKAHPEVTKQER--KSLCRLI 261 (434)
Q Consensus 211 nL~~sKF~~LAealPd~AR~~hDgLYRAIDiYLKaHp~lse~Er--~~lC~~l 261 (434)
++--..=+++-|-| .+.+|..|-||-|.++|-+.|||+.+.+- |.|-|=|
T Consensus 197 GveYeERMe~Leev-tyPkPL~e~L~~af~~y~~~hPWv~~~~l~PKSVvRdM 248 (461)
T PF12029_consen 197 GVEYEERMERLEEV-TYPKPLAELLEAAFETYRRGHPWVGDFELSPKSVVRDM 248 (461)
T ss_pred CCCHHHHHHHHhhC-CCCCchHHHHHHHHHHHHhcCCcccCCCCCcchHHHHH
Confidence 44444444444444 37899999999999999999999988764 3444433
No 45
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=21.24 E-value=86 Score=27.59 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=17.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHH
Q 013895 327 REVGAQQMEIRKLREEVLRLQS 348 (434)
Q Consensus 327 re~~~l~~e~~~mr~rv~eLe~ 348 (434)
.||..|+.|++.+|.++.+++.
T Consensus 36 EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 36 EENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 6778888888888888888776
No 46
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=20.66 E-value=1.3e+02 Score=24.72 Aligned_cols=39 Identities=21% Similarity=0.334 Sum_probs=26.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 013895 328 EVGAQQMEIRKLREEVLRLQSQCNAMQVQIEKLVEKKKG 366 (434)
Q Consensus 328 e~~~l~~e~~~mr~rv~eLe~~c~~mq~~~ekl~~~k~~ 366 (434)
.+..|+.+++.++.+...|+.+-..++.+.+++...+.+
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~ 57 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNA 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777777777777777777777766544444
No 47
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=20.53 E-value=2.1e+02 Score=23.66 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=22.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013895 327 REVGAQQMEIRKLREEVLRLQSQCNAMQVQIE 358 (434)
Q Consensus 327 re~~~l~~e~~~mr~rv~eLe~~c~~mq~~~e 358 (434)
.+|-.|+.++..|+.++.++++......+.++
T Consensus 43 keNieLKve~~~L~~el~~~~~~l~~a~~~~e 74 (75)
T PF07989_consen 43 KENIELKVEVESLKRELQEKKKLLKEAEKAIE 74 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666777777777777777777666666554
Done!