Query 013895
Match_columns 434
No_of_seqs 185 out of 372
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 19:07:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013895.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013895hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yy0_A C-MYC-binding protein; 86.6 0.77 2.6E-05 34.5 4.2 34 326-359 18-51 (53)
2 3a2a_A Voltage-gated hydrogen 83.6 1.9 6.5E-05 32.9 5.1 36 327-362 11-46 (58)
3 3vmx_A Voltage-gated hydrogen 83.1 2.4 8.4E-05 31.5 5.4 34 329-362 6-39 (48)
4 1deb_A APC protein, adenomatou 76.5 5.5 0.00019 29.9 5.5 36 326-361 16-51 (54)
5 1vjh_A BET V I allergen family 62.3 5 0.00017 33.9 3.1 33 205-248 90-122 (122)
6 3b0b_C CENP-X, centromere prot 54.3 14 0.0005 29.8 4.4 44 163-207 6-49 (81)
7 4dra_E Centromere protein X; D 48.0 15 0.00051 30.0 3.5 45 162-207 9-53 (84)
8 3vp9_A General transcriptional 46.4 28 0.00096 29.0 5.0 28 331-358 47-74 (92)
9 1ci6_A Transcription factor AT 44.1 34 0.0012 26.0 4.9 30 328-357 31-60 (63)
10 3i3n_A Kelch-like protein 11; 35.8 25 0.00086 32.7 3.6 155 96-278 91-248 (279)
11 3fs7_A Parvalbumin, thymic; ca 35.1 1.4E+02 0.0046 22.7 7.3 59 208-270 21-82 (109)
12 1hjb_A Ccaat/enhancer binding 34.8 49 0.0017 27.1 4.7 29 331-359 47-75 (87)
13 2wt7_B Transcription factor MA 34.7 54 0.0018 27.1 4.9 33 328-360 56-88 (90)
14 1t2k_D Cyclic-AMP-dependent tr 34.4 58 0.002 24.3 4.7 24 332-355 34-57 (61)
15 2yy0_A C-MYC-binding protein; 34.1 55 0.0019 24.3 4.5 22 327-348 26-47 (53)
16 3qh9_A Liprin-beta-2; coiled-c 33.9 62 0.0021 26.4 5.0 23 327-349 19-41 (81)
17 4dzn_A Coiled-coil peptide CC- 29.7 91 0.0031 20.9 4.4 26 329-354 4-29 (33)
18 1use_A VAsp, vasodilator-stimu 29.1 70 0.0024 23.4 4.1 23 335-357 8-31 (45)
19 1go4_E MAD1 (mitotic arrest de 26.6 72 0.0025 26.8 4.4 26 335-360 13-38 (100)
20 3ie5_A Phenolic oxidative coup 25.7 32 0.0011 30.6 2.3 18 232-249 146-163 (165)
21 2wt7_A Proto-oncogene protein 25.4 1.1E+02 0.0039 22.9 5.0 25 331-355 34-58 (63)
22 1nkp_B MAX protein, MYC proto- 25.4 80 0.0027 24.7 4.3 32 329-360 49-80 (83)
23 2xv5_A Lamin-A/C; structural p 25.1 95 0.0033 24.5 4.7 29 332-360 3-31 (74)
24 1dip_A Delta-sleep-inducing pe 25.0 72 0.0025 25.7 3.9 30 327-356 15-44 (78)
25 3hve_A Gigaxonin; ubiquitin, c 24.9 32 0.0011 31.4 2.2 125 96-248 83-210 (256)
26 4a8u_A Major pollen allergen B 23.8 37 0.0013 29.8 2.3 17 233-249 141-157 (159)
27 1ci6_A Transcription factor AT 23.7 1.5E+02 0.0051 22.4 5.4 33 328-360 24-56 (63)
28 1gu4_A CAAT/enhancer binding p 22.9 84 0.0029 25.1 4.0 25 336-360 38-62 (78)
29 1e09_A PRU AV 1; allergen, maj 22.3 42 0.0014 29.1 2.3 36 206-249 122-157 (159)
30 1jnm_A Proto-oncogene C-JUN; B 21.9 53 0.0018 24.6 2.5 25 336-360 24-48 (62)
31 3rws_A MTN13 protein; zeatin, 21.8 42 0.0015 29.9 2.3 17 233-249 147-163 (168)
32 3v9r_B MHF2, uncharacterized p 21.3 49 0.0017 27.3 2.4 39 168-207 4-42 (88)
33 2wql_A Major allergen DAU C 1; 21.1 40 0.0014 29.6 1.9 32 207-246 123-154 (154)
No 1
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=86.58 E-value=0.77 Score=34.49 Aligned_cols=34 Identities=9% Similarity=0.316 Sum_probs=30.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013895 326 KREVGAQQMEIRKLREEVLRLQSQCNAMQVQIEK 359 (434)
Q Consensus 326 ~re~~~l~~e~~~mr~rv~eLe~~c~~mq~~~ek 359 (434)
..|...|+.|++.||.++.+|..++.+++.++++
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678899999999999999999999999988764
No 2
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=83.63 E-value=1.9 Score=32.95 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=30.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013895 327 REVGAQQMEIRKLREEVLRLQSQCNAMQVQIEKLVE 362 (434)
Q Consensus 327 re~~~l~~e~~~mr~rv~eLe~~c~~mq~~~ekl~~ 362 (434)
+....|+.-+..+-.+|..||-+|+.|.++|+++.+
T Consensus 11 ~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 11 RQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777888999999999999999999999854
No 3
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=83.11 E-value=2.4 Score=31.47 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=29.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013895 329 VGAQQMEIRKLREEVLRLQSQCNAMQVQIEKLVE 362 (434)
Q Consensus 329 ~~~l~~e~~~mr~rv~eLe~~c~~mq~~~ekl~~ 362 (434)
...|+.-++.+=.+|.+||..|..+.++|+++.+
T Consensus 6 l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 6 ILRLKQINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 4467777889999999999999999999998843
No 4
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=76.47 E-value=5.5 Score=29.94 Aligned_cols=36 Identities=17% Similarity=0.288 Sum_probs=32.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013895 326 KREVGAQQMEIRKLREEVLRLQSQCNAMQVQIEKLV 361 (434)
Q Consensus 326 ~re~~~l~~e~~~mr~rv~eLe~~c~~mq~~~ekl~ 361 (434)
+.||..||.|++.=...+..||.+-+.||..+..+.
T Consensus 16 k~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 16 KMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence 578889999999999999999999999999887763
No 5
>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A
Probab=62.25 E-value=5 Score=33.88 Aligned_cols=33 Identities=9% Similarity=0.087 Sum_probs=25.6
Q ss_pred HhcCCCCCChhHHHHHHhhcCCccccccchhHHHHHHHHHhCCC
Q 013895 205 EAAMDSNLSLSEFVALAGALPSHARATDDGLYRAIDTYLKAHPE 248 (434)
Q Consensus 205 EIA~D~nL~~sKF~~LAealPd~AR~~hDgLYRAIDiYLKaHp~ 248 (434)
|...|.+.+|.++.+.+ .++++|||.||-+||.
T Consensus 90 e~~~~~~~~p~~~~~~~-----------~~~~k~ie~yll~~p~ 122 (122)
T 1vjh_A 90 EKVHKDIDDPHSIIDES-----------VKYFKKLDEAILNFKE 122 (122)
T ss_dssp EESSTTSCCSHHHHHHH-----------HHHHHHHHHHHHHC--
T ss_pred EECCCCCCCHHHHHHHH-----------HHHHHHHHHHHhhCCC
Confidence 45667788888886655 7889999999999984
No 6
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=54.25 E-value=14 Score=29.81 Aligned_cols=44 Identities=27% Similarity=0.317 Sum_probs=34.4
Q ss_pred CccccHHHHHHHHHHHHhccccCccchhHHHHHHHHHHhHHHHhc
Q 013895 163 GTLLDVELVSRLVKKFVHLDIEGAKSGAALVKVAKLVDCYLAEAA 207 (434)
Q Consensus 163 ~tlYDVdlV~Ril~~Fl~~~~~~~~~~~~l~kVakLvD~YLaEIA 207 (434)
+..++.+++.||+..+...+... .+..++..||+++|-|..|..
T Consensus 6 ~~~~~~~lI~ril~~~f~~~ktr-I~~dAl~l~aeyl~iFV~EAv 49 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRTR-VNGDALLLMAELLKVFVREAA 49 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTCE-ECHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCccc-ccHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999977654322 356789999999999999954
No 7
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=47.99 E-value=15 Score=30.01 Aligned_cols=45 Identities=36% Similarity=0.433 Sum_probs=34.6
Q ss_pred CCccccHHHHHHHHHHHHhccccCccchhHHHHHHHHHHhHHHHhc
Q 013895 162 CGTLLDVELVSRLVKKFVHLDIEGAKSGAALVKVAKLVDCYLAEAA 207 (434)
Q Consensus 162 ~~tlYDVdlV~Ril~~Fl~~~~~~~~~~~~l~kVakLvD~YLaEIA 207 (434)
++..+..++|.||+..+...+. .-.+..++..|++++|-|..|..
T Consensus 9 ~~~~i~~~li~ril~~~F~~~k-TkIs~dAl~l~aeyl~iFV~EAv 53 (84)
T 4dra_E 9 AGSGFRKELVSRLLHLHFKDDK-TKVSGDALQLMVELLKVFVVEAA 53 (84)
T ss_dssp --CCCCHHHHHHHHHTTCSSTT-CEECHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCC-ccccHHHHHHHHHHHHHHHHHHH
Confidence 3557899999999998876543 22456789999999999999853
No 8
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=46.35 E-value=28 Score=28.95 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013895 331 AQQMEIRKLREEVLRLQSQCNAMQVQIE 358 (434)
Q Consensus 331 ~l~~e~~~mr~rv~eLe~~c~~mq~~~e 358 (434)
.+-.||+.+|..|.+||.....||+.+|
T Consensus 47 ~Qi~Emq~Ir~tvyeLE~~h~kmKq~YE 74 (92)
T 3vp9_A 47 QQLAEMQQIRNTVYERELTHRKMKDAYE 74 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557899999999999999999999876
No 9
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=44.12 E-value=34 Score=26.02 Aligned_cols=30 Identities=17% Similarity=0.147 Sum_probs=17.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013895 328 EVGAQQMEIRKLREEVLRLQSQCNAMQVQI 357 (434)
Q Consensus 328 e~~~l~~e~~~mr~rv~eLe~~c~~mq~~~ 357 (434)
+...|..++..|+.+|..|+.|+..+++-|
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555556666666666666666555544
No 10
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=35.82 E-value=25 Score=32.68 Aligned_cols=155 Identities=10% Similarity=0.120 Sum_probs=84.5
Q ss_pred HHHHHHHhhcCCCCCCccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhcccCcccccccCCCCCCCccccHHHHHHHH
Q 013895 96 FFVETLVGILPPEKDSLPCNFFLRLLRTANMVNVEPAYREELEKRISWQLDQASLKELMIPSFSHTCGTLLDVELVSRLV 175 (434)
Q Consensus 96 ~llEtiV~lLP~ek~svsc~FLf~LLR~A~~l~as~~cr~~LEkRIg~QLdqAtLdDLLIPs~~~~~~tlYDVdlV~Ril 175 (434)
..++.++..+-.++-.++-.-+..||.+|..+++.. .+..-++-+..+|+..+.-+++.-+. .|+.+-+..
T Consensus 91 ~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~-L~~~c~~~L~~~l~~~n~~~i~~~A~------~~~~~~L~~-- 161 (279)
T 3i3n_A 91 DTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIR-LKEFCGEFLKKKLHLSNCVAIHSLAH------MYTLSQLAL-- 161 (279)
T ss_dssp HHHHHHHHHHHHSEEEEETTTHHHHHHHHHHTTCHH-HHHHHHHHHHHHCCTTTHHHHHHHHH------HTTCHHHHH--
T ss_pred HHHHHHHHhhCcCCcccCHHHHHHHHHHHHHHCcHH-HHHHHHHHHHHcCCcchHHHHHHHHH------HcCcHHHHH--
Confidence 456666666655555566677899999999999853 33344444444444433222222111 122211111
Q ss_pred HHHHhccccCccchhHHHHHHHHHHhHHHHhcCCC---CCChhHHHHHHhhcCCccccccchhHHHHHHHHHhCCCCcHH
Q 013895 176 KKFVHLDIEGAKSGAALVKVAKLVDCYLAEAAMDS---NLSLSEFVALAGALPSHARATDDGLYRAIDTYLKAHPEVTKQ 252 (434)
Q Consensus 176 ~~Fl~~~~~~~~~~~~l~kVakLvD~YLaEIA~D~---nL~~sKF~~LAealPd~AR~~hDgLYRAIDiYLKaHp~lse~ 252 (434)
..-+.|..+..+|...+ +|+...+..|-.. ++-.=.+.+.+|.||-.+++.+|.--..
T Consensus 162 ------------------~~~~~i~~~f~~v~~~~~f~~L~~~~l~~lL~~-d~L~v~sE~~vf~av~~W~~~~~~~r~~ 222 (279)
T 3i3n_A 162 ------------------KAADMIRRNFHKVIQDEEFYTLPFHLIRDWLSD-LEITVDSEEVLFETVLKWVQRNAEERER 222 (279)
T ss_dssp ------------------HHHHHHHHTHHHHTTSSGGGGSCHHHHHHHHTC-SSCCCSCHHHHHHHHHHHHHTTHHHHTT
T ss_pred ------------------HHHHHHHHHHHHHhcCcChhcCCHHHHHHHhcC-cCCCCCCHHHHHHHHHHHHHcCHHHHHH
Confidence 22223333333443322 4666666555543 1112245788999999999976532112
Q ss_pred hhhhhccccccCCCCHHHhHHHHhCC
Q 013895 253 ERKSLCRLIDSRKLSPEASLHAAQND 278 (434)
Q Consensus 253 Er~~lC~~ldc~KLS~eAc~HAaQNe 278 (434)
.-.+|.+.+-..-||++-..+.++++
T Consensus 223 ~~~~ll~~VRf~l~~~~~L~~~v~~~ 248 (279)
T 3i3n_A 223 YFEELFKLLRLSQMKPTYLTRHVKPE 248 (279)
T ss_dssp THHHHHTTSCGGGSCHHHHHHTTTTS
T ss_pred HHHHHHHhcCCCCCCHHHHHHHhhcc
Confidence 22456667777778888777766655
No 11
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=35.13 E-value=1.4e+02 Score=22.74 Aligned_cols=59 Identities=12% Similarity=0.220 Sum_probs=43.0
Q ss_pred CCCCCChhHHHHHHhhcCCccccccchhHHHHHHHHHhCCC-CcHHhhhhhccccc--cCCCCHHH
Q 013895 208 MDSNLSLSEFVALAGALPSHARATDDGLYRAIDTYLKAHPE-VTKQERKSLCRLID--SRKLSPEA 270 (434)
Q Consensus 208 ~D~nL~~sKF~~LAealPd~AR~~hDgLYRAIDiYLKaHp~-lse~Er~~lC~~ld--c~KLS~eA 270 (434)
.|..+....|..+...- ....+.+.+|.+.|=+.+.+ |+.+|-..+++.+. ..+++.+.
T Consensus 21 ~~g~i~~~eF~~~~~~~----~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~ 82 (109)
T 3fs7_A 21 AADSFNYKSFFSTVGLS----SKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAE 82 (109)
T ss_dssp STTCCCHHHHHHHHTCT----TCCHHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTTSCCCCHHH
T ss_pred CCCcCcHHHHHHHHhcC----CCcHHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcccccCCHHH
Confidence 68889999999887652 23556677888877666654 89999888888774 45566554
No 12
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=34.84 E-value=49 Score=27.06 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=15.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013895 331 AQQMEIRKLREEVLRLQSQCNAMQVQIEK 359 (434)
Q Consensus 331 ~l~~e~~~mr~rv~eLe~~c~~mq~~~ek 359 (434)
.|..|+..|+.+|..|++|...++..+-.
T Consensus 47 ~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 47 ELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555554443
No 13
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=34.67 E-value=54 Score=27.08 Aligned_cols=33 Identities=33% Similarity=0.442 Sum_probs=17.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013895 328 EVGAQQMEIRKLREEVLRLQSQCNAMQVQIEKL 360 (434)
Q Consensus 328 e~~~l~~e~~~mr~rv~eLe~~c~~mq~~~ekl 360 (434)
|+..|+.+++.|+.+..++.++...|++.++.+
T Consensus 56 e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 56 EKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555555555555555555555555543
No 14
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=34.38 E-value=58 Score=24.27 Aligned_cols=24 Identities=17% Similarity=0.165 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 013895 332 QQMEIRKLREEVLRLQSQCNAMQV 355 (434)
Q Consensus 332 l~~e~~~mr~rv~eLe~~c~~mq~ 355 (434)
|..++..|+.+|..|+.+...+++
T Consensus 34 L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 34 LSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 15
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=34.09 E-value=55 Score=24.29 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=10.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHH
Q 013895 327 REVGAQQMEIRKLREEVLRLQS 348 (434)
Q Consensus 327 re~~~l~~e~~~mr~rv~eLe~ 348 (434)
.|+..|+..++.++.++.+|+.
T Consensus 26 ~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 26 LELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554444
No 16
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=33.87 E-value=62 Score=26.35 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=18.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHH
Q 013895 327 REVGAQQMEIRKLREEVLRLQSQ 349 (434)
Q Consensus 327 re~~~l~~e~~~mr~rv~eLe~~ 349 (434)
+..+.|-.||..+|.+|.+||.|
T Consensus 19 ~~~E~L~qEi~~Lr~kv~elEnE 41 (81)
T 3qh9_A 19 RKAEELLQELRHLKIKVEELENE 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 44557888999999999999844
No 17
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=29.67 E-value=91 Score=20.90 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=12.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH
Q 013895 329 VGAQQMEIRKLREEVLRLQSQCNAMQ 354 (434)
Q Consensus 329 ~~~l~~e~~~mr~rv~eLe~~c~~mq 354 (434)
+..|++|+..++.++.-|+-+...++
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555544444443
No 18
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=29.10 E-value=70 Score=23.39 Aligned_cols=23 Identities=9% Similarity=0.432 Sum_probs=12.6
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHH
Q 013895 335 EIRKLREEV-LRLQSQCNAMQVQI 357 (434)
Q Consensus 335 e~~~mr~rv-~eLe~~c~~mq~~~ 357 (434)
++++++.++ .|+.+|...||++|
T Consensus 8 dle~~KqEIL~E~RkElqK~K~EI 31 (45)
T 1use_A 8 DLQRVKQELLEEVKKELQKVKEEI 31 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555543 34566666666653
No 19
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=26.58 E-value=72 Score=26.81 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013895 335 EIRKLREEVLRLQSQCNAMQVQIEKL 360 (434)
Q Consensus 335 e~~~mr~rv~eLe~~c~~mq~~~ekl 360 (434)
++..+|.++..||+++..++++++.+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~L 38 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRML 38 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666665555543
No 20
>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} SCOP: d.129.3.0
Probab=25.66 E-value=32 Score=30.61 Aligned_cols=18 Identities=39% Similarity=0.809 Sum_probs=15.1
Q ss_pred cchhHHHHHHHHHhCCCC
Q 013895 232 DDGLYRAIDTYLKAHPEV 249 (434)
Q Consensus 232 hDgLYRAIDiYLKaHp~l 249 (434)
-.+++++||.||-+||..
T Consensus 146 ~~~~~K~ie~yllanp~~ 163 (165)
T 3ie5_A 146 AYEFYKQVEEYLAANPEV 163 (165)
T ss_dssp HHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHHhChhh
Confidence 356899999999999963
No 21
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=25.45 E-value=1.1e+02 Score=22.92 Aligned_cols=25 Identities=16% Similarity=0.209 Sum_probs=10.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 013895 331 AQQMEIRKLREEVLRLQSQCNAMQV 355 (434)
Q Consensus 331 ~l~~e~~~mr~rv~eLe~~c~~mq~ 355 (434)
.|..++..|+.+|..|+.++..++.
T Consensus 34 ~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 34 QLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 22
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=25.36 E-value=80 Score=24.71 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=22.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013895 329 VGAQQMEIRKLREEVLRLQSQCNAMQVQIEKL 360 (434)
Q Consensus 329 ~~~l~~e~~~mr~rv~eLe~~c~~mq~~~ekl 360 (434)
+..|+.+++.|..++.+|+.+...+++++..+
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666667777777777777777777777654
No 23
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=25.13 E-value=95 Score=24.53 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013895 332 QQMEIRKLREEVLRLQSQCNAMQVQIEKL 360 (434)
Q Consensus 332 l~~e~~~mr~rv~eLe~~c~~mq~~~ekl 360 (434)
+..|.+..+..+..||.++..++.+|++.
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~q 31 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQ 31 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777777777777777766644
No 24
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=25.04 E-value=72 Score=25.68 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=22.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013895 327 REVGAQQMEIRKLREEVLRLQSQCNAMQVQ 356 (434)
Q Consensus 327 re~~~l~~e~~~mr~rv~eLe~~c~~mq~~ 356 (434)
+|...||..|..+-.++.+||.|++-+|+-
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566778888888888888888887777654
No 25
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=24.86 E-value=32 Score=31.42 Aligned_cols=125 Identities=6% Similarity=0.074 Sum_probs=61.6
Q ss_pred HHHHHHHhhcCCCCCCccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhcccCcccccccCCCCCCCccccHHHHHHHH
Q 013895 96 FFVETLVGILPPEKDSLPCNFFLRLLRTANMVNVEPAYREELEKRISWQLDQASLKELMIPSFSHTCGTLLDVELVSRLV 175 (434)
Q Consensus 96 ~llEtiV~lLP~ek~svsc~FLf~LLR~A~~l~as~~cr~~LEkRIg~QLdqAtLdDLLIPs~~~~~~tlYDVdlV~Ril 175 (434)
..++.++..+-.++-.++..-+..+|.+|..+++.. .+..-++-+..+|+.-+.-+++.-+. .|+.+-+....
T Consensus 83 ~~f~~ll~~~Yt~~~~i~~~~v~~ll~~A~~l~i~~-l~~~c~~~L~~~l~~~n~~~i~~~A~------~~~~~~L~~~~ 155 (256)
T 3hve_A 83 MVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTD-LKTLCCEFLEGCIAAENCIGIRDFAL------HYCLHHVHYLA 155 (256)
T ss_dssp HHHHHHHHHHHHSCCCCC-CCHHHHHHHHHHHTCHH-HHHHHHHHHHHTCCSSTTHHHHHHHH------HTTCHHHHHHH
T ss_pred HHHHHHHhhccCCCCcccHhHHHHHHHHHHHHChHH-HHHHHHHHHHhhCCHhhHHHHHHHHH------HcCcHHHHHHH
Confidence 466677766666655677778899999999999863 33344444444444333333322111 12222111111
Q ss_pred HHHHhccccCccchhHHHHHHHHHHhHHHHhcCC---CCCChhHHHHHHhhcCCccccccchhHHHHHHHHHhCCC
Q 013895 176 KKFVHLDIEGAKSGAALVKVAKLVDCYLAEAAMD---SNLSLSEFVALAGALPSHARATDDGLYRAIDTYLKAHPE 248 (434)
Q Consensus 176 ~~Fl~~~~~~~~~~~~l~kVakLvD~YLaEIA~D---~nL~~sKF~~LAealPd~AR~~hDgLYRAIDiYLKaHp~ 248 (434)
. +.|..+..+|... .+|+...+..|-.. ++-.=.+.+.+|.||-.+++.+|.
T Consensus 156 ~--------------------~~i~~~f~~v~~~~~f~~L~~~~l~~lL~~-d~L~v~~E~~v~~av~~W~~~~~~ 210 (256)
T 3hve_A 156 T--------------------EYLETHFRDVSSTEEFLELSPQKLKEVISL-EKLNVGNERYVFEAVIRWIAHDTE 210 (256)
T ss_dssp H--------------------HHHHHHHHHHTTCHHHHSSCHHHHHHHHHC-C-------CTTHHHHTTTCCC--C
T ss_pred H--------------------HHHHHHHHHHhCCcchhcCCHHHHHHHHcc-CCCCCCCHHHHHHHHHHHHHcCHH
Confidence 1 2222222233221 15666666666554 111113578899999999887653
No 26
>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A
Probab=23.84 E-value=37 Score=29.80 Aligned_cols=17 Identities=41% Similarity=0.810 Sum_probs=14.4
Q ss_pred chhHHHHHHHHHhCCCC
Q 013895 233 DGLYRAIDTYLKAHPEV 249 (434)
Q Consensus 233 DgLYRAIDiYLKaHp~l 249 (434)
.+++++||.||-+||..
T Consensus 141 ~~~~k~ie~yll~np~~ 157 (159)
T 4a8u_A 141 ETLLRAVESYLLAHSDA 157 (159)
T ss_dssp HHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHhhChhh
Confidence 37899999999999963
No 27
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=23.66 E-value=1.5e+02 Score=22.38 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=21.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013895 328 EVGAQQMEIRKLREEVLRLQSQCNAMQVQIEKL 360 (434)
Q Consensus 328 e~~~l~~e~~~mr~rv~eLe~~c~~mq~~~ekl 360 (434)
+...|..+.+.|..+-.+|+.++..++.++.-+
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666667777777777777777776654
No 28
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=22.94 E-value=84 Score=25.12 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 013895 336 IRKLREEVLRLQSQCNAMQVQIEKL 360 (434)
Q Consensus 336 ~~~mr~rv~eLe~~c~~mq~~~ekl 360 (434)
.+.+..++.+|+.+...++.+|+.|
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L 62 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQL 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666655
No 29
>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A
Probab=22.34 E-value=42 Score=29.12 Aligned_cols=36 Identities=25% Similarity=0.473 Sum_probs=26.1
Q ss_pred hcCCCCCChhHHHHHHhhcCCccccccchhHHHHHHHHHhCCCC
Q 013895 206 AAMDSNLSLSEFVALAGALPSHARATDDGLYRAIDTYLKAHPEV 249 (434)
Q Consensus 206 IA~D~nL~~sKF~~LAealPd~AR~~hDgLYRAIDiYLKaHp~l 249 (434)
...+.++++.+.... ...-.++|+|||.||.+||..
T Consensus 122 ~~~~~~~~~~~~~~~--------~~~~~~~~k~ie~yll~~~~~ 157 (159)
T 1e09_A 122 TKGNVEIKEEHVKAG--------KEKASNLFKLIETYLKGHPDA 157 (159)
T ss_dssp ECSSCCCCHHHHHHH--------HHHHHHHHHHHHHHHHHCTTS
T ss_pred ECCCCCCCHHHHHHH--------HHHHHHHHHHHHHHHHhChhh
Confidence 456677777766422 334678999999999999963
No 30
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=21.92 E-value=53 Score=24.62 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 013895 336 IRKLREEVLRLQSQCNAMQVQIEKL 360 (434)
Q Consensus 336 ~~~mr~rv~eLe~~c~~mq~~~ekl 360 (434)
++.|..+|.+|+.+...++.++..+
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L 48 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANML 48 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 31
>3rws_A MTN13 protein; zeatin, cytokinin, hormone, lucerne, nodulin, NODU plant protein; HET: ZEA; 1.85A {Medicago truncatula}
Probab=21.78 E-value=42 Score=29.90 Aligned_cols=17 Identities=29% Similarity=0.815 Sum_probs=14.7
Q ss_pred chhHHHHHHHHHhCCCC
Q 013895 233 DGLYRAIDTYLKAHPEV 249 (434)
Q Consensus 233 DgLYRAIDiYLKaHp~l 249 (434)
-+++++||.||-+||..
T Consensus 147 ~~~~k~ie~yllanp~~ 163 (168)
T 3rws_A 147 EGFTKAVESFLLANPDY 163 (168)
T ss_dssp HHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhChHh
Confidence 46899999999999974
No 32
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=21.34 E-value=49 Score=27.32 Aligned_cols=39 Identities=13% Similarity=0.154 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhccccCccchhHHHHHHHHHHhHHHHhc
Q 013895 168 VELVSRLVKKFVHLDIEGAKSGAALVKVAKLVDCYLAEAA 207 (434)
Q Consensus 168 VdlV~Ril~~Fl~~~~~~~~~~~~l~kVakLvD~YLaEIA 207 (434)
.+++.||+..|...+.. ..+...+..|+|.||-|..|..
T Consensus 4 ~~llaRIL~~~F~~~kT-rIt~da~~lv~kY~diFVrEAv 42 (88)
T 3v9r_B 4 KEALIKILSQNEGGNDM-KIADEVVPMIQKYLDIFIDEAV 42 (88)
T ss_dssp SHHHHHHHTTTSCSSCC-EECTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCc-eecHHHHHHHHHHHHHHHHHHH
Confidence 46889999977764432 2345688999999999999853
No 33
>2wql_A Major allergen DAU C 1; pathogenesis-related protein, plant defense; HET: P4C; 2.70A {Daucus carota} PDB: 2bk0_A
Probab=21.14 E-value=40 Score=29.62 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=21.5
Q ss_pred cCCCCCChhHHHHHHhhcCCccccccchhHHHHHHHHHhC
Q 013895 207 AMDSNLSLSEFVALAGALPSHARATDDGLYRAIDTYLKAH 246 (434)
Q Consensus 207 A~D~nL~~sKF~~LAealPd~AR~~hDgLYRAIDiYLKaH 246 (434)
..|..+++.+..+.++.. .|+|+|||-||=+|
T Consensus 123 ~~~~~~~ee~~~~~~~~~--------~~~~KaiEayLlan 154 (154)
T 2wql_A 123 KGDAVVPEENIKFADAQN--------TALFKAIEAYLIAN 154 (154)
T ss_dssp STTCCCCHHHHHHHHHHH--------HHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHH--------HhHHHHHHHHHhcC
Confidence 345566666665544432 58999999999776
Done!