BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013896
(434 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 128 bits (322), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 166/344 (48%), Gaps = 25/344 (7%)
Query: 50 QVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKM 109
+V H T LDG +S+R + + LG+ +++ G +GI TM KGE ++F +
Sbjct: 48 EVEVHYTGTLLDGKKFDSSRD----RDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFTI 103
Query: 110 KPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETP 169
P++ YGE +P T P + L F++E++ + + IA D G+ KK++ EG WE P
Sbjct: 104 PPELAYGES----GSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKWENP 159
Query: 170 RAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT 229
+ P EV A+ DG ++S EG FT + L + TM + EK ++ V
Sbjct: 160 KDPDEVFVKYEARLEDG-TVVSKSEG--VEFTVKDGHLCPALAKAVKTMKKGEKVLLAVK 216
Query: 230 SQYLTPSPLMPVVEGCXXXXXXXXXXXXIQ------VRDMLGDGRLIKRRIRDGKGEFPM 283
QY P ++ V ++ D +++K+ +++ +G
Sbjct: 217 PQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEG---Y 273
Query: 284 DCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPG 343
+ P +++ V G L ++ VF D +P EF + E V EG + V M G
Sbjct: 274 ERPNEGAVVTVKITGKL--QDGTVFLKKGHDEQ-EPFEFKTDEEAVIEGLDRAVLNMKKG 330
Query: 344 EIALVTCPPDYAY--DKFLRPANVPEGAHIQWEIELLGFEKPKD 385
E+ALVT PP+YAY + + A VP + + +E+EL+ F K K+
Sbjct: 331 EVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVKDKE 374
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 11/207 (5%)
Query: 29 GSLMKAVMRXXXXXXXXXXXXQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKI 88
G + K +++ +V R DG +V + + + +
Sbjct: 143 GGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSEG--------VEFTVKDGHL 194
Query: 89 LLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPS-TFPKDEELHFEIEMIDFAKAK 147
L + + TM KGE + +KPQ +GE P A P + L ++E++ +
Sbjct: 195 CPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVT 254
Query: 148 IIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLIL--SHREGEPYFFTFGKS 205
I DD ++KKV+ E +G+E P V I+ K DG + L H E EP+ F +
Sbjct: 255 EIGDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEE 314
Query: 206 EVPKGLEMGIGTMTREEKAVIYVTSQY 232
V +GL+ + M + E A++ + +Y
Sbjct: 315 AVIEGLDRAVLNMKKGEVALVTIPPEY 341
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 284 DCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPG 343
D P + VHY G LL+ +K +D+ D D +F G+G V +G++ ++ M G
Sbjct: 41 DTPEVGDEVEVHYTGTLLDGKK---FDSSRDRD-DTFKFKLGQGQVIKGWDQGIKTMKKG 96
Query: 344 EIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWT--GLSFDGIMDEAEK 400
E AL T PP+ AY + P +P A +Q+++ELL + +D G F I+ E +K
Sbjct: 97 ENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDK 155
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 97/226 (42%), Gaps = 24/226 (10%)
Query: 165 GWETPRAPYEVKAWISAKTGDGKLILSHREGEPYF-FTFGKSEVPKGLEMGIGTMTREEK 223
GW+TP EV+ + DGK S R+ + F F G+ +V KG + GI TM + E
Sbjct: 39 GWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGEN 98
Query: 224 AVIYVTSQYL---TPSPLMPVVEGCXXXXXXXXXXXXIQVRDMLGDGRLIKRRIRDG-KG 279
A+ + + + SP P + VRD+ DG + K+ +++G K
Sbjct: 99 ALFTIPPELAYGESGSP--PTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKW 156
Query: 280 EFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRL 339
E P D + V Y+ L D V + + +EF+ +G + V+
Sbjct: 157 ENPKDP----DEVFVKYEARL--------EDGTVVSKSEGVEFTVKDGHLCPALAKAVKT 204
Query: 340 MLPGEIALVTCPPDYAYDKFLRPA-----NVPEGAHIQWEIELLGF 380
M GE L+ P Y + + RPA VP A + ++EL+ +
Sbjct: 205 MKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSW 250
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 98/341 (28%), Positives = 166/341 (48%), Gaps = 25/341 (7%)
Query: 50 QVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKM 109
+V H T LDG +S+R + + LG+ +++ G +GI TM KGE ++F +
Sbjct: 32 EVEVHYTGTLLDGKKFDSSRD----RDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFTI 87
Query: 110 KPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETP 169
P++ YGE +P T P + L F++E++ + + IA D G+ KK++ EG WE P
Sbjct: 88 PPELAYGES----GSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKWENP 143
Query: 170 RAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT 229
+ P EV A+ DG ++S EG FT + L + TM + EK ++ V
Sbjct: 144 KDPDEVFVKYEARLEDG-TVVSKSEG--VEFTVKDGHLCPALAKAVKTMKKGEKVLLAVK 200
Query: 230 SQYLTPSPLMPVVEGCXXXXXXXXXXXXIQ------VRDMLGDGRLIKRRIRDGKGEFPM 283
QY P ++ V ++ D +++K+ +++ +G
Sbjct: 201 PQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEG---Y 257
Query: 284 DCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPG 343
+ P +++ V G L ++ VF + ++ +P EF + E V EG + V M G
Sbjct: 258 ERPNEGAVVTVKITGKL--QDGTVFL-KKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKG 314
Query: 344 EIALVTCPPDYAY--DKFLRPANVPEGAHIQWEIELLGFEK 382
E+ALVT PP+YAY + + A VP + + +E+EL+ F K
Sbjct: 315 EVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVK 355
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 11/207 (5%)
Query: 29 GSLMKAVMRXXXXXXXXXXXXQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKI 88
G + K +++ +V R DG +V + + + +
Sbjct: 127 GGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSEG--------VEFTVKDGHL 178
Query: 89 LLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPS-TFPKDEELHFEIEMIDFAKAK 147
L + + TM KGE + +KPQ +GE P A P + L ++E++ +
Sbjct: 179 CPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVT 238
Query: 148 IIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLIL--SHREGEPYFFTFGKS 205
I DD ++KKV+ E +G+E P V I+ K DG + L H E EP+ F +
Sbjct: 239 EIGDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEE 298
Query: 206 EVPKGLEMGIGTMTREEKAVIYVTSQY 232
V +GL+ + M + E A++ + +Y
Sbjct: 299 AVIEGLDRAVLNMKKGEVALVTIPPEY 325
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 284 DCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPG 343
D P + VHY G LL+ +K +D+ D D +F G+G V +G++ ++ M G
Sbjct: 25 DTPEVGDEVEVHYTGTLLDGKK---FDSSRDRD-DTFKFKLGQGQVIKGWDQGIKTMKKG 80
Query: 344 EIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWT--GLSFDGIMDEAEK 400
E AL T PP+ AY + P +P A +Q+++ELL + +D G F I+ E +K
Sbjct: 81 ENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDK 139
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 97/226 (42%), Gaps = 24/226 (10%)
Query: 165 GWETPRAPYEVKAWISAKTGDGKLILSHREGEPYF-FTFGKSEVPKGLEMGIGTMTREEK 223
GW+TP EV+ + DGK S R+ + F F G+ +V KG + GI TM + E
Sbjct: 23 GWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGEN 82
Query: 224 AVIYVTSQYL---TPSPLMPVVEGCXXXXXXXXXXXXIQVRDMLGDGRLIKRRIRDG-KG 279
A+ + + + SP P + VRD+ DG + K+ +++G K
Sbjct: 83 ALFTIPPELAYGESGSP--PTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKW 140
Query: 280 EFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRL 339
E P D + V Y+ L D V + + +EF+ +G + V+
Sbjct: 141 ENPKDP----DEVFVKYEARL--------EDGTVVSKSEGVEFTVKDGHLCPALAKAVKT 188
Query: 340 MLPGEIALVTCPPDYAYDKFLRPA-----NVPEGAHIQWEIELLGF 380
M GE L+ P Y + + RPA VP A + ++EL+ +
Sbjct: 189 MKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSW 234
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 122/283 (43%), Gaps = 26/283 (9%)
Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLI-LSHREGEPYFFTFGKSEVPKG 210
D GV+K V G G ETP V + K +GK SH EP+ F+ GK +V K
Sbjct: 30 DRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKA 89
Query: 211 LEMGIGTMTREEKAVIYVTSQYLTPS----PLMPVVEGCXXXXXXXXXXXXIQVRDMLGD 266
++G+ TM + E + +Y + P +P + D+L D
Sbjct: 90 WDIGVATMKKGEICHLLCKPEYAYGATGSLPKIP----SNATLFFEVELLDFKGEDLLED 145
Query: 267 GRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGE 326
G +I+R R G+G P + + +H +G +VF D + + F+ GE
Sbjct: 146 GGIIRRTKRRGEG---YSNPNEGARVQIHLEGRCGG---RVF-------DCRDVAFTVGE 192
Query: 327 GL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEK 382
G +P G + + M E ++ P Y + + +P + A + +E+ L FEK
Sbjct: 193 GEDHDIPIGIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEK 252
Query: 383 PKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVI 425
K+ + +++A ++ G FK GK+ A +Y K++
Sbjct: 253 AKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIV 295
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 78/158 (49%), Gaps = 13/158 (8%)
Query: 78 PIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFE 137
P +GK +++ G+ TM KGE+ KP+ YG + P + L FE
Sbjct: 76 PFVFSIGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYG----ATGSLPKIPSNATLFFE 131
Query: 138 IEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEP 197
+E++DF K + + +D G++++ G+G+ P V+ + + G G++ +
Sbjct: 132 VELLDF-KGEDLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRCG-GRVF----DCRD 185
Query: 198 YFFTFGKSE---VPKGLEMGIGTMTREEKAVIYVTSQY 232
FT G+ E +P G++ + M REE+ ++++ +Y
Sbjct: 186 VAFTVGEGEDHDIPIGIDKALEKMQREEQCILHLGPRY 223
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 119/283 (42%), Gaps = 26/283 (9%)
Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLI-LSHREGEPYFFTFGKSEVPKG 210
D GV+K V G G ETP +V K +GK SH EP+ F+ GK +V K
Sbjct: 30 DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 89
Query: 211 LEMGIGTMTREEKAVIYVTSQYLTPS----PLMPVVEGCXXXXXXXXXXXXIQVRDMLGD 266
++G+ TM R E + +Y S P +P + D+ D
Sbjct: 90 WDIGVATMKRGEICHLLCKPEYAYGSAGSLPKIP----SNATLFFEIELLDFKGEDLFED 145
Query: 267 GRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGE 326
G +I+R R G+G P + + +H +G +D R + F+ GE
Sbjct: 146 GGIIRRTKRKGEG---YSNPNEGATVEIHLEGRCGGR----MFDCR------DVAFTVGE 192
Query: 327 GL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEK 382
G +P G + + M E ++ P Y + + +P + A + +E+ L FEK
Sbjct: 193 GEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEK 252
Query: 383 PKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVI 425
K+ + +++A ++ G FK GK+ A +Y K++
Sbjct: 253 AKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIV 295
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 79/158 (50%), Gaps = 13/158 (8%)
Query: 78 PIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFE 137
P LGK +++ G+ TM +GE+ KP+ YG + P + L FE
Sbjct: 76 PFVFSLGKGQVIKAWDIGVATMKRGEICHLLCKPEYAYG----SAGSLPKIPSNATLFFE 131
Query: 138 IEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEP 197
IE++DF K + + +D G++++ +G+G+ P V+ + + G G++ +
Sbjct: 132 IELLDF-KGEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRCG-GRMF----DCRD 185
Query: 198 YFFTFGKSE---VPKGLEMGIGTMTREEKAVIYVTSQY 232
FT G+ E +P G++ + M REE+ ++Y+ +Y
Sbjct: 186 VAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRY 223
>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
pdb|3O5D|B Chain B, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
Length = 264
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 13/158 (8%)
Query: 78 PIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFE 137
P LGK +++ G+ TM KGE+ KP+ YG + P + L FE
Sbjct: 80 PFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYG----SAGSLPKIPSNATLFFE 135
Query: 138 IEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEP 197
IE++DF K + + +D G++++ +G+G+ P V+ + + G G++ +
Sbjct: 136 IELLDF-KGEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRCG-GRMF----DCRD 189
Query: 198 YFFTFGKSE---VPKGLEMGIGTMTREEKAVIYVTSQY 232
FT G+ E +P G++ + M REE+ ++Y+ +Y
Sbjct: 190 VAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRY 227
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 100/243 (41%), Gaps = 26/243 (10%)
Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGK-LILSHREGEPYFFTFGKSEVPKG 210
D GV+K V G G ETP +V K +GK SH EP+ F+ GK +V K
Sbjct: 34 DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 93
Query: 211 LEMGIGTMTREEKAVIYVTSQYLTPS----PLMPVVEGCXXXXXXXXXXXXIQVRDMLGD 266
++G+ TM + E + +Y S P +P + D+ D
Sbjct: 94 WDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIP----SNATLFFEIELLDFKGEDLFED 149
Query: 267 GRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGE 326
G +I+R R G+G P + + +H +G +D R + F+ GE
Sbjct: 150 GGIIRRTKRKGEG---YSNPNEGATVEIHLEGRCGGR----MFDCR------DVAFTVGE 196
Query: 327 GL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEK 382
G +P G + + M E ++ P Y + + +P + A + +E+ L FEK
Sbjct: 197 GEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEK 256
Query: 383 PKD 385
K+
Sbjct: 257 AKE 259
>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRH|D Chain D, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRI|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
D ++K R G GE + P+ + VHYKG L N +K +D+ D + +P FS G
Sbjct: 34 DRGVLKIVKRVGNGE---ETPMIGDKVYVHYKGKLSNGKK---FDSSHDRN-EPFVFSLG 86
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
+G V + +++ V M GEI + C P+YAY +P A + +EIELL F+
Sbjct: 87 KGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK 142
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGK-LILSHREGEPYFFTFGKSEVPKG 210
D GV+K V G G ETP +V K +GK SH EP+ F+ GK +V K
Sbjct: 34 DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 93
Query: 211 LEMGIGTMTREEKAVIYVTSQY 232
++G+ TM + E + +Y
Sbjct: 94 WDIGVATMKKGEICHLLCKPEY 115
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 78 PIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFE 137
P LGK +++ G+ TM KGE+ KP+ YG + P + L FE
Sbjct: 80 PFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGS----AGSLPKIPSNATLFFE 135
Query: 138 IEMIDF 143
IE++DF
Sbjct: 136 IELLDF 141
>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I
pdb|3O5I|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5I|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5J|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Iii
pdb|3O5K|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|C Chain C, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|D Chain D, Fk1 Domain Of Fkbp51, Crystal Form Viii
Length = 128
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
D ++K R G GE + P+ + VHYKG L N +K +D+ D + +P FS G
Sbjct: 18 DRGVLKIVKRVGNGE---ETPMIGDKVYVHYKGKLSNGKK---FDSSHDRN-EPFVFSLG 70
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
+G V + +++ V M GEI + C P+YAY +P A + +EIELL F+
Sbjct: 71 KGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK 126
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGK-LILSHREGEPYFFTFGKSEVPKG 210
D GV+K V G G ETP +V K +GK SH EP+ F+ GK +V K
Sbjct: 18 DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 77
Query: 211 LEMGIGTMTREEKAVIYVTSQY 232
++G+ TM + E + +Y
Sbjct: 78 WDIGVATMKKGEICHLLCKPEY 99
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 78 PIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFE 137
P LGK +++ G+ TM KGE+ KP+ YG + P + L FE
Sbjct: 64 PFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGS----AGSLPKIPSNATLFFE 119
Query: 138 IEMIDF 143
IE++DF
Sbjct: 120 IELLDF 125
>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I
pdb|3O5M|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5M|B Chain B, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5O|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iii
pdb|3O5P|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv
pdb|3O5Q|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv, In
Presence Of Dmso
pdb|3O5R|A Chain A, Complex Of Fk506 With The Fk1 Domain Mutant A19t Of Fkbp51
pdb|4DRQ|A Chain A, Exploration Of Pipecolate Sulfonamides As Binders Of The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-1-((S)-1-(3,5-
Dichlorophenylsulfonyl)piperidine-2-Carbonyloxy)-3-(3,
4-Dimethoxy - Phenyl)propyl)phenoxy)acetic Acid
pdb|4DRK|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRK|B Chain B, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRM|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRN|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRO|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
(1r)-3-(3,4-Dimethoxyphenyl)-1- Phenylpropyl
(2s)-1-{[(1r,2s)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidine-2-Carboxylate
pdb|4DRP|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-3-(3,4-
Dimethoxyphenyl)-1-((S)-1-(2-((1r,
2s)-2-Ethyl-1-Hydroxy-Cyclohexyl)-
2-Oxoacetyl)piperidine-2-
Carbonyloxy)propyl)phenoxy)acetic Acid From
Cocrystallization
Length = 128
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
D ++K R G GE + P+ + VHYKG L N +K +D+ D + +P FS G
Sbjct: 18 DRGVLKIVKRVGNGE---ETPMIGDKVYVHYKGKLSNGKK---FDSSHDRN-EPFVFSLG 70
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
+G V + +++ V M GEI + C P+YAY +P A + +EIELL F+
Sbjct: 71 KGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK 126
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGK-LILSHREGEPYFFTFGKSEVPKG 210
D GV+K V G G ETP +V K +GK SH EP+ F+ GK +V K
Sbjct: 18 DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 77
Query: 211 LEMGIGTMTREEKAVIYVTSQY 232
++G+ TM + E + +Y
Sbjct: 78 WDIGVATMKKGEICHLLCKPEY 99
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 78 PIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFE 137
P LGK +++ G+ TM KGE+ KP+ YG + P + L FE
Sbjct: 64 PFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGS----AGSLPKIPSNATLFFE 119
Query: 138 IEMIDF 143
IE++DF
Sbjct: 120 IELLDF 125
>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi
pdb|3O5F|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vii
Length = 144
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
D ++K R G GE + P+ + VHYKG L N +K +D+ D + +P FS G
Sbjct: 34 DRGVLKIVKRVGNGE---ETPMIGDKVYVHYKGKLSNGKK---FDSSHDRN-EPFVFSLG 86
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
+G V + +++ V M GEI + C P+YAY +P A + +EIELL F+
Sbjct: 87 KGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK 142
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGK-LILSHREGEPYFFTFGKSEVPKG 210
D GV+K V G G ETP +V K +GK SH EP+ F+ GK +V K
Sbjct: 34 DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 93
Query: 211 LEMGIGTMTREEKAVIYVTSQY 232
++G+ TM + E + +Y
Sbjct: 94 WDIGVATMKKGEICHLLCKPEY 115
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 78 PIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFE 137
P LGK +++ G+ TM KGE+ KP+ YG + P + L FE
Sbjct: 80 PFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGS----AGSLPKIPSNATLFFE 135
Query: 138 IEMIDF 143
IE++DF
Sbjct: 136 IELLDF 141
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 85/168 (50%), Gaps = 17/168 (10%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
D ++ K+ I++G G P S +HY+ N + K F DT ++ QP+E G
Sbjct: 48 DEKVSKQIIKEGHGSKPSKY----STCFLHYRAWTKNSQHK-FEDTW--HEQQPIELVLG 100
Query: 326 -EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDK---FLRPANVPEGAHIQWEIELLGFE 381
E G + V M GE ALV + AY K F P NVP A + +E+E++GF+
Sbjct: 101 KEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFP-NVPPMADLLYEVEVIGFD 159
Query: 382 KPKDWTGLSFDGIMDE----AEKIRVTGNRLFKEGKFELAKAKYEKVI 425
+ K+ S D ++E A++ ++ GN LFKE K E A +YE I
Sbjct: 160 ETKEGKARS-DMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAI 206
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 78 PIRHVLGKSKI-LLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHF 136
PI VLGK K L GL G+ +M GE ++ + ++ YG+ + + P+ P +L +
Sbjct: 94 PIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGK-EGNFSFPNV-PPMADLLY 151
Query: 137 EIEMIDFAKAK 147
E+E+I F + K
Sbjct: 152 EVEVIGFDETK 162
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 27/172 (15%)
Query: 263 MLGDGRLIKRRIRDGKG-EFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
M DG +I+R G+G P + + + L +YK L D + L
Sbjct: 21 MEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF--------------DQRELR 66
Query: 322 FSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAY-----DKFLRPANVPEGAHIQW 373
F GEG +P G E ++ M GE ++V P YA+ +KF +P A +++
Sbjct: 67 FEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKF----QIPPNAELKY 122
Query: 374 EIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVI 425
E+ L FEK K+ ++ + ++++ ++ G FKEGK++ A +Y+K++
Sbjct: 123 ELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIV 174
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 149 IADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSE-- 206
+ +D G+++++ G+G+ P V+ + D + RE F G+ E
Sbjct: 21 MEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDK--LFDQRE---LRFEIGEGENL 75
Query: 207 -VPKGLEMGIGTMTREEKAVIYVTSQY 232
+P GLE I M + E +++Y+ Y
Sbjct: 76 DLPYGLERAIQRMEKGEHSIVYLKPSY 102
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 91 GLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAK 147
GL I M KGE S+ +KP +G P + EL +E+ + F KAK
Sbjct: 80 GLERAIQRMEKGEHSIVYLKPSYAFG---SVGKEKFQIPPNAELKYELHLKSFEKAK 133
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
pdb|1N1A|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
Length = 140
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
D ++K R+G G + P+ + VHY G LL+ K +D+ +D + F G
Sbjct: 30 DEGVLKVIKREGTG---TEMPMIGDRVFVHYTGWLLDGTK---FDSSLDRKDK-FSFDLG 82
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
+G V + +++ + M GE+ +TC P+YAY P +P A + +E+EL F+
Sbjct: 83 KGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK 138
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 8/113 (7%)
Query: 31 LMKAVMRXXXXXXXXXXXXQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILL 90
++K + R +V H T LDG +S+ + LGK +++
Sbjct: 33 VLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLD----RKDKFSFDLGKGEVIK 88
Query: 91 GLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
I TM GEV KP+ YG +P P + L FE+E+ +F
Sbjct: 89 AWDIAIATMKVGEVCHITCKPEYAYGS----AGSPPKIPPNATLVFEVELFEF 137
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 7/93 (7%)
Query: 152 DFGVVKKVINEGQGWETP----RAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEV 207
D GV+K + EG G E P R W+ T K S + + F GK EV
Sbjct: 30 DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGT---KFDSSLDRKDKFSFDLGKGEV 86
Query: 208 PKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMP 240
K ++ I TM E I +Y S P
Sbjct: 87 IKAWDIAIATMKVGEVCHITCKPEYAYGSAGSP 119
>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
D ++K R+G G + P+ + VHY G LL+ K +D+ +D + F G
Sbjct: 34 DEGVLKVIKREGTG---TEMPMIGDRVFVHYTGWLLDGTK---FDSSLDRKDK-FSFDLG 86
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
+G V + +++ + M GE+ +TC P+YAY P +P A + +E+EL F+
Sbjct: 87 KGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK 142
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 8/113 (7%)
Query: 31 LMKAVMRXXXXXXXXXXXXQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILL 90
++K + R +V H T LDG +S+ + LGK +++
Sbjct: 37 VLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLD----RKDKFSFDLGKGEVIK 92
Query: 91 GLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
I TM GEV KP+ YG +P P + L FE+E+ +F
Sbjct: 93 AWDIAIATMKVGEVCHITCKPEYAYGS----AGSPPKIPPNATLVFEVELFEF 141
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 7/93 (7%)
Query: 152 DFGVVKKVINEGQGWETP----RAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEV 207
D GV+K + EG G E P R W+ T K S + + F GK EV
Sbjct: 34 DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGT---KFDSSLDRKDKFSFDLGKGEV 90
Query: 208 PKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMP 240
K ++ I TM E I +Y S P
Sbjct: 91 IKAWDIAIATMKVGEVCHITCKPEYAYGSAGSP 123
>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, Minimized Average Structure
pdb|1ROU|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, 22 Structures
Length = 149
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
D ++K R+G G + P+ + VHY G LL+ K +D+ +D + F G
Sbjct: 29 DEGVLKVIKREGTG---TETPMIGDRVFVHYTGWLLDGTK---FDSSLDRKDK-FSFDLG 81
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
+G V + +++ V M GE+ +TC P+YAY P +P A + +E+EL F+
Sbjct: 82 KGEVIKAWDIAVATMKVGELCRITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK 137
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 8/125 (6%)
Query: 31 LMKAVMRXXXXXXXXXXXXQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILL 90
++K + R +V H T LDG +S+ + LGK +++
Sbjct: 32 VLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLD----RKDKFSFDLGKGEVIK 87
Query: 91 GLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIA 150
+ TM GE+ KP+ YG +P P + L FE+E+ +F +
Sbjct: 88 AWDIAVATMKVGELCRITCKPEYAYGS----AGSPPKIPPNATLVFEVELFEFKGEDLTD 143
Query: 151 DDFGV 155
D+ GV
Sbjct: 144 DEDGV 148
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 7/93 (7%)
Query: 152 DFGVVKKVINEGQGWETP----RAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEV 207
D GV+K + EG G ETP R W+ T K S + + F GK EV
Sbjct: 29 DEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGT---KFDSSLDRKDKFSFDLGKGEV 85
Query: 208 PKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMP 240
K ++ + TM E I +Y S P
Sbjct: 86 IKAWDIAVATMKVGELCRITCKPEYAYGSAGSP 118
>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl
Isomerase
Length = 135
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
DG ++K ++G+G P + + VHY G L N K +D+ D G F+ G
Sbjct: 13 DGGVLKLIKKEGQGVVK---PTTGTTVKVHYVGTLENGTK---FDSSRDR-GDQFSFNLG 65
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELL 378
G V +G+++ V M GE+A T DY Y P +P GA + +E+EL
Sbjct: 66 RGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELF 118
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 11/137 (8%)
Query: 23 RMKIVP---GSLMKAVMRXXXXXXXXXXXXQVAYHCTVRTLDGVIVESTRSEYGGKGIPI 79
++ I P G ++K + + V H +G +S+R +G
Sbjct: 5 KIDITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRD----RGDQF 60
Query: 80 RHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIE 139
LG+ ++ G G+ TM KGEV+ F ++ YG+ +P P L FE+E
Sbjct: 61 SFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGD----AGSPPKIPGGATLIFEVE 116
Query: 140 MIDFAKAKIIADDFGVV 156
+ +++ I D G +
Sbjct: 117 LFEWSAEDISPDRDGTI 133
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 139 EMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEP 197
E ID K D GV+K + EGQG P VK +G S R+ G+
Sbjct: 4 EKIDITPKK----DGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQ 59
Query: 198 YFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQY 232
+ F G+ V KG ++G+ TMT+ E A + S Y
Sbjct: 60 FSFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDY 94
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 8/121 (6%)
Query: 275 RDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFE 334
R+G G + P+ + VHY G LL+ K +D+ +D + F G+G V + ++
Sbjct: 59 REGTG---TEMPMIGDRVFVHYTGWLLDGTK---FDSSLDRKDK-FSFDLGKGEVIKAWD 111
Query: 335 MCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGI 394
+ + M GE+ +TC P+YAY P +P A + +E+EL F K +D T GI
Sbjct: 112 IAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF-KGEDLTEEEDGGI 170
Query: 395 M 395
+
Sbjct: 171 I 171
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 85/206 (41%), Gaps = 17/206 (8%)
Query: 31 LMKAVMRXXXXXXXXXXXXQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILL 90
++K + R +V H T LDG +S+ + LGK +++
Sbjct: 53 VLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLD----RKDKFSFDLGKGEVIK 108
Query: 91 GLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKII- 149
I TM GEV KP+ YG +P P + L FE+E+ +F +
Sbjct: 109 AWDIAIATMKVGEVCHITCKPEYAYGS----AGSPPKIPPNATLVFEVELFEFKGEDLTE 164
Query: 150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSE--- 206
+D G+++++ G+G+ P V+ + D + RE F G+ E
Sbjct: 165 EEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDK--LFDQRE---LRFEIGEGENLD 219
Query: 207 VPKGLEMGIGTMTREEKAVIYVTSQY 232
+P GLE I M + E +++Y+ Y
Sbjct: 220 LPYGLERAIQRMEKGEHSIVYLKPSY 245
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 96/243 (39%), Gaps = 24/243 (9%)
Query: 152 DFGVVKKVINEGQGWETP----RAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEV 207
D GV+K + EG G E P R W+ T K S + + F GK EV
Sbjct: 50 DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGT---KFDSSLDRKDKFSFDLGKGEV 106
Query: 208 PKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCXXXXXXXXXXXXIQVRDMLG-- 265
K ++ I TM E I +Y S P + D+
Sbjct: 107 IKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGEDLTEEE 166
Query: 266 DGRLIKRRIRDGKGEF-PMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSS 324
DG +I+R G+G P + + + L +YK L ++ + F E
Sbjct: 167 DGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRF------------EIGE 214
Query: 325 GEGL-VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEK 382
GE L +P G E ++ M GE ++V P YA+ + +P A +++E+ L FEK
Sbjct: 215 GENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEK 274
Query: 383 PKD 385
K+
Sbjct: 275 AKE 277
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 91 GLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAK 147
GL I M KGE S+ +KP +G P + EL +E+ + F KAK
Sbjct: 223 GLERAIQRMEKGEHSIVYLKPSYAFG---SVGKEKFQIPPNAELKYELHLKSFEKAK 276
>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin
Length = 107
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
P VHY GML N +K +D+ D + +P +F G+ V +GFE M G+
Sbjct: 16 PKKGQTCVVHYTGMLQNGKK---FDSSRDRN-KPFKFRIGKQEVIKGFEEGAAQMSLGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
A +TC PD AY P +P A + +++ELL E
Sbjct: 72 AKLTCTPDVAYGATGHPGVIPPNATLIFDVELLNLE 107
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 54 HCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQM 113
H T +G +S+R + P + +GK +++ G EG M G+ + P +
Sbjct: 25 HYTGMLQNGKKFDSSRD----RNKPFKFRIGKQEVIKGFEEGAAQMSLGQRAKLTCTPDV 80
Query: 114 HYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
YG P P + L F++E+++
Sbjct: 81 AYGA----TGHPGVIPPNATLIFDVELLNL 106
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLE 212
GV + I+ G G P+ + +GK S R+ +P+ F GK EV KG E
Sbjct: 1 GVEIETISPGDGRTFPKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFE 60
Query: 213 MGIGTMTREEKAVIYVT 229
G M+ ++A + T
Sbjct: 61 EGAAQMSLGQRAKLTCT 77
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti
pdb|2LPV|A Chain A, Solution Structure Of Fkbp12 From Aedes Aegypti
Length = 108
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
P + VHY G L + KVF +R G+P F+ G G V G++ V M G+
Sbjct: 17 PKAGQVAVVHYTGTL--ADGKVFDSSRTR--GKPFRFTVGRGEVIRGWDEGVAQMSVGQR 72
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
A + C PDYAY P +P A + +++ELL E
Sbjct: 73 AKLVCSPDYAYGSRGHPGVIPPNATLTFDVELLRVE 108
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 50 QVAY-HCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFK 108
QVA H T DG + +S+R+ +G P R +G+ +++ G EG+ M G+ +
Sbjct: 21 QVAVVHYTGTLADGKVFDSSRT----RGKPFRFTVGRGEVIRGWDEGVAQMSVGQRAKLV 76
Query: 109 MKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMI 141
P YG P P + L F++E++
Sbjct: 77 CSPDYAYGSR----GHPGVIPPNATLTFDVELL 105
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin
Length = 107
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
P VHY GML E+ K F +R N +P +F G+ V GFE V M G+
Sbjct: 16 PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGFEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
A +T PDYAY P +P A + +++ELL E
Sbjct: 72 AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLE 212
GV + I+ G G P+ + DGK S R+ +P+ F GK EV +G E
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGFE 60
Query: 213 MGIGTMTREEKAVIYVTSQY 232
G+ M+ ++A + ++ Y
Sbjct: 61 EGVAQMSVGQRAKLTISPDY 80
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 54 HCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQM 113
H T DG +S+R + P + +LGK +++ G EG+ M G+ + + P
Sbjct: 25 HYTGMLEDGKKFDSSRD----RNKPFKFMLGKQEVIRGFEEGVAQMSVGQRAKLTISPDY 80
Query: 114 HYGEDDCPVAAPSTFPKDEELHFEIEMI 141
YG P P L F++E++
Sbjct: 81 AYGA----TGHPGIIPPHATLVFDVELL 104
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 27/172 (15%)
Query: 263 MLGDGRLIKRRIRDGKG-EFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
M DG +I+R G+G P + + + L +YK L D + L
Sbjct: 21 MEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF--------------DQRELR 66
Query: 322 FSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAY-----DKFLRPANVPEGAHIQW 373
F GEG +P G E ++ GE ++V P YA+ +KF +P A +++
Sbjct: 67 FEIGEGENLDLPYGLERAIQRXEKGEHSIVYLKPSYAFGSVGKEKF----QIPPNAELKY 122
Query: 374 EIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVI 425
E+ L FEK K+ + + ++++ ++ G FKEGK++ A +Y+K++
Sbjct: 123 ELHLKSFEKAKESWEXNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIV 174
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding
Protein
pdb|1FKL|A Chain A, Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin-
Immunosuppressant Complex
Length = 107
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
P VHY GML E+ K F +R N +P +F G+ V G+E V M G+
Sbjct: 16 PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFVLGKQEVIRGWEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
A +T PDYAY P +P A + +++ELL E
Sbjct: 72 AKLTISPDYAYGATGHPGIIPPNATLIFDVELLKLE 107
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 54 HCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQM 113
H T DG +S+R + P + VLGK +++ G EG+ M G+ + + P
Sbjct: 25 HYTGMLEDGKKFDSSRD----RNKPFKFVLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY 80
Query: 114 HYGEDDCPVAAPSTFPKDEELHFEIEMI 141
YG P P + L F++E++
Sbjct: 81 AYGA----TGHPGIIPPNATLIFDVELL 104
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLE 212
GV + I+ G G P+ + DGK S R+ +P+ F GK EV +G E
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFVLGKQEVIRGWE 60
Query: 213 MGIGTMTREEKAVIYVTSQY 232
G+ M+ ++A + ++ Y
Sbjct: 61 EGVAQMSVGQRAKLTISPDY 80
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin Complexed
With Fkbp12: Is The Cyclohexyl Moiety Part Of The
Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin Complex
Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
P VHY GML E+ K F +R N +P +F G+ V G+E V M G+
Sbjct: 16 PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
A +T PDYAY P +P A + +++ELL E
Sbjct: 72 AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 54 HCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQM 113
H T DG +S+R + P + +LGK +++ G EG+ M G+ + + P
Sbjct: 25 HYTGMLEDGKKFDSSRD----RNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY 80
Query: 114 HYGEDDCPVAAPSTFPKDEELHFEIEMI 141
YG P P L F++E++
Sbjct: 81 AYGA----TGHPGIIPPHATLVFDVELL 104
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLE 212
GV + I+ G G P+ + DGK S R+ +P+ F GK EV +G E
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 213 MGIGTMTREEKAVIYVTSQY 232
G+ M+ ++A + ++ Y
Sbjct: 61 EGVAQMSVGQRAKLTISPDY 80
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
P VHY GML E+ K F +R N +P +F G+ V G+E V M G+
Sbjct: 18 PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWEEGVAQMSVGQR 73
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
A +T PDYAY P +P A + +++ELL E
Sbjct: 74 AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 109
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 54 HCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQM 113
H T DG +S+R + P + +LGK +++ G EG+ M G+ + + P
Sbjct: 27 HYTGMLEDGKKFDSSRD----RNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY 82
Query: 114 HYGEDDCPVAAPSTFPKDEELHFEIEMI 141
YG P P L F++E++
Sbjct: 83 AYGA----TGHPGIIPPHATLVFDVELL 106
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKG 210
GV + I+ G G P+ + DGK S R+ +P+ F GK EV +G
Sbjct: 1 SMGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRG 60
Query: 211 LEMGIGTMTREEKAVIYVTSQY 232
E G+ M+ ++A + ++ Y
Sbjct: 61 WEEGVAQMSVGQRAKLTISPDY 82
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp-
12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
Length = 107
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
P VHY GML E+ K F +R N +P +F G+ V G+E V M G+
Sbjct: 16 PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
A +T PDYAY P +P A + +++ELL E
Sbjct: 72 AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 54 HCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQM 113
H T DG +S+R + P + +LGK +++ G EG+ M G+ + + P
Sbjct: 25 HYTGMLEDGKKFDSSRD----RNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY 80
Query: 114 HYGEDDCPVAAPSTFPKDEELHFEIEMI 141
YG P P L F++E++
Sbjct: 81 AYGA----TGHPGIIPPHATLVFDVELL 104
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 158 KVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIG 216
+ I+ G G P+ + DGK S R+ +P+ F GK EV +G E G+
Sbjct: 5 ETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVA 64
Query: 217 TMTREEKAVIYVTSQY 232
M+ ++A + ++ Y
Sbjct: 65 QMSVGQRAKLTISPDY 80
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin
Length = 107
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
P VHY GML E+ K F +R N +P +F G+ V G E V M G+
Sbjct: 16 PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGLEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
A +T PDYAY P +P A + +++ELL E
Sbjct: 72 AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLE 212
GV + I+ G G P+ + DGK S R+ +P+ F GK EV +GLE
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGLE 60
Query: 213 MGIGTMTREEKAVIYVTSQY 232
G+ M+ ++A + ++ Y
Sbjct: 61 EGVAQMSVGQRAKLTISPDY 80
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 54 HCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQM 113
H T DG +S+R + P + +LGK +++ GL EG+ M G+ + + P
Sbjct: 25 HYTGMLEDGKKFDSSRD----RNKPFKFMLGKQEVIRGLEEGVAQMSVGQRAKLTISPDY 80
Query: 114 HYGEDDCPVAAPSTFPKDEELHFEIEMI 141
YG P P L F++E++
Sbjct: 81 AYGA----TGHPGIIPPHATLVFDVELL 104
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
P VHY GML E+ K F +R N +P +F G+ V G+E V M G+
Sbjct: 16 PKRGQTCVVHYTGML--EDGKKFDSSRDKN--KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
A +T PDYAY P +P A + +++ELL E
Sbjct: 72 AKLTISPDYAYGATGVPGIIPPHATLVFDVELLKLE 107
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 54 HCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQM 113
H T DG +S+R K P + +LGK +++ G EG+ M G+ + + P
Sbjct: 25 HYTGMLEDGKKFDSSRD----KNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY 80
Query: 114 HYGEDDCPVAAPSTFPKDEELHFEIEMI 141
YG P P L F++E++
Sbjct: 81 AYGA----TGVPGIIPPHATLVFDVELL 104
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLE 212
GV + I+ G G P+ + DGK S R+ +P+ F GK EV +G E
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDKNKPFKFMLGKQEVIRGWE 60
Query: 213 MGIGTMTREEKAVIYVTSQY 232
G+ M+ ++A + ++ Y
Sbjct: 61 EGVAQMSVGQRAKLTISPDY 80
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
P VHY GML E+ K F +R N +P +F G+ V G+E V M G+
Sbjct: 16 PKAGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
A +T PDYAY P +P A + +++ELL E
Sbjct: 72 AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLE 212
GV + I+ G G P+A + DGK S R+ +P+ F GK EV +G E
Sbjct: 1 GVQVETISPGDGRTFPKAGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 213 MGIGTMTREEKAVIYVTSQY 232
G+ M+ ++A + ++ Y
Sbjct: 61 EGVAQMSVGQRAKLTISPDY 80
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 54 HCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQM 113
H T DG +S+R + P + +LGK +++ G EG+ M G+ + + P
Sbjct: 25 HYTGMLEDGKKFDSSRD----RNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY 80
Query: 114 HYGEDDCPVAAPSTFPKDEELHFEIEMI 141
YG P P L F++E++
Sbjct: 81 AYGA----TGHPGIIPPHATLVFDVELL 104
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12
Length = 107
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
P VHY GML E+ K F +R N +P +F G+ V G++ V M G+
Sbjct: 16 PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWQEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
A +T PDYAY P +P A + +++ELL E
Sbjct: 72 AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 54 HCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQM 113
H T DG +S+R + P + +LGK +++ G EG+ M G+ + + P
Sbjct: 25 HYTGMLEDGKKFDSSRD----RNKPFKFMLGKQEVIRGWQEGVAQMSVGQRAKLTISPDY 80
Query: 114 HYGEDDCPVAAPSTFPKDEELHFEIEMI 141
YG P P L F++E++
Sbjct: 81 AYGA----TGHPGIIPPHATLVFDVELL 104
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLE 212
GV + I+ G G P+ + DGK S R+ +P+ F GK EV +G +
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWQ 60
Query: 213 MGIGTMTREEKAVIYVTSQY 232
G+ M+ ++A + ++ Y
Sbjct: 61 EGVAQMSVGQRAKLTISPDY 80
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12
Length = 107
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
P VHY GML E+ K F +R N +P +F G+ V G+ V M G+
Sbjct: 16 PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWAEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
A +T PDYAY P +P A + +++ELL E
Sbjct: 72 AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 54 HCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQM 113
H T DG +S+R + P + +LGK +++ G EG+ M G+ + + P
Sbjct: 25 HYTGMLEDGKKFDSSRD----RNKPFKFMLGKQEVIRGWAEGVAQMSVGQRAKLTISPDY 80
Query: 114 HYGEDDCPVAAPSTFPKDEELHFEIEMI 141
YG P P L F++E++
Sbjct: 81 AYGA----TGHPGIIPPHATLVFDVELL 104
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLE 212
GV + I+ G G P+ + DGK S R+ +P+ F GK EV +G
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWA 60
Query: 213 MGIGTMTREEKAVIYVTSQY 232
G+ M+ ++A + ++ Y
Sbjct: 61 EGVAQMSVGQRAKLTISPDY 80
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
Length = 107
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
P VHY GML + KKV D+ D + +P +F G+ V G+E V M G+
Sbjct: 16 PKRGQTCVVHYTGML-EDGKKV--DSSRDRN-KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
A +T PDYAY P +P A + +++ELL E
Sbjct: 72 AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 54 HCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQM 113
H T DG V+S+R + P + +LGK +++ G EG+ M G+ + + P
Sbjct: 25 HYTGMLEDGKKVDSSRD----RNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY 80
Query: 114 HYGEDDCPVAAPSTFPKDEELHFEIEMI 141
YG P P L F++E++
Sbjct: 81 AYGA----TGHPGIIPPHATLVFDVELL 104
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLE 212
GV + I+ G G P+ + DGK + S R+ +P+ F GK EV +G E
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKVDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 213 MGIGTMTREEKAVIYVTSQY 232
G+ M+ ++A + ++ Y
Sbjct: 61 EGVAQMSVGQRAKLTISPDY 80
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506
Binding Domain From Plasmodium Vivax
pdb|3IHZ|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3IHZ|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3NI6|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3NI6|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3PA7|A Chain A, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
pdb|3PA7|B Chain B, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
Length = 126
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
DG ++K +R G+G + P + + VHY G L KVF +R N P +F G
Sbjct: 14 DGGVVKTILRKGEG-GEENAPKKGNEVTVHYVGKL-ESSGKVFDSSRERN--VPFKFHLG 69
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 380
+G V +G+++CV M E V Y Y + ++P + + +EIEL+ F
Sbjct: 70 QGEVIKGWDICVASMTKNEKCSVRLDSKYGYGEEGCGESIPGNSVLIFEIELISF 124
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 149 IADDFGVVKKVINEGQGWE--TPRAPYEVKA-WISAKTGDGKLILSHREGE-PYFFTFGK 204
+ +D GVVK ++ +G+G E P+ EV ++ GK+ S RE P+ F G+
Sbjct: 11 LTEDGGVVKTILRKGEGGEENAPKKGNEVTVHYVGKLESSGKVFDSSRERNVPFKFHLGQ 70
Query: 205 SEVPKGLEMGIGTMTREEKAVIYVTSQY 232
EV KG ++ + +MT+ EK + + S+Y
Sbjct: 71 GEVIKGWDICVASMTKNEKCSVRLDSKY 98
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 61 DGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDC 120
G + +S+R + +P + LG+ +++ G + +M K E ++ + YGE+ C
Sbjct: 50 SGKVFDSSRE----RNVPFKFHLGQGEVIKGWDICVASMTKNEKCSVRLDSKYGYGEEGC 105
Query: 121 PVAAPSTFPKDEELHFEIEMIDF 143
+ P + L FEIE+I F
Sbjct: 106 ----GESIPGNSVLIFEIELISF 124
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
P VHY GML E+ K +R N +P +F G+ V G+E V M G+
Sbjct: 16 PKRGQTCVVHYTGML--EDGKKMDSSRDRN--KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
A +T PDYAY P +P A + +++ELL E
Sbjct: 72 AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 54 HCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQM 113
H T DG ++S+R + P + +LGK +++ G EG+ M G+ + + P
Sbjct: 25 HYTGMLEDGKKMDSSRD----RNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY 80
Query: 114 HYGEDDCPVAAPSTFPKDEELHFEIEMI 141
YG P P L F++E++
Sbjct: 81 AYGA----TGHPGIIPPHATLVFDVELL 104
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLE 212
GV + I+ G G P+ + DGK + S R+ +P+ F GK EV +G E
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKMDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 213 MGIGTMTREEKAVIYVTSQY 232
G+ M+ ++A + ++ Y
Sbjct: 61 EGVAQMSVGQRAKLTISPDY 80
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl
Cis-Trans Isomerase From Giardia Lamblia, Seattle
Structural Genomics Center For Infectious Disease Target
Gilaa.00840.A
Length = 130
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 157 KKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGI 215
KKV+ G G P+A +V + DGK S R G+P+ FT G EV KG + G+
Sbjct: 28 KKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGV 87
Query: 216 GTMTREEKAVIYVTSQ 231
TMT EKA+ + Q
Sbjct: 88 ATMTLGEKALFTIPYQ 103
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 268 RLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEG 327
+L K+ + G G + P + VHY G + K F +R + G+P +F+ G G
Sbjct: 25 QLEKKVLTPGDG---VTKPQAGKKVTVHYDGRF--PDGKQFDSSR--SRGKPFQFTLGAG 77
Query: 328 LVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELL 378
V +G++ V M GE AL T P AY + P +P A + +E+ELL
Sbjct: 78 EVIKGWDQGVATMTLGEKALFTIPYQLAYGERGYPPVIPPKATLVFEVELL 128
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 50 QVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKM 109
+V H R DG +S+RS +G P + LG +++ G +G+ TM GE ++F +
Sbjct: 45 KVTVHYDGRFPDGKQFDSSRS----RGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFTI 100
Query: 110 KPQMHYGEDDCPVAAPSTFPKDEELHFEIEMI 141
Q+ YGE P P L FE+E++
Sbjct: 101 PYQLAYGERGY----PPVIPPKATLVFEVELL 128
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug
Complexes. Crystallographic And Functional Analysis
Length = 113
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
+G + RI G G P L+ +HY G L N +K +D+ VD G P + + G
Sbjct: 5 EGNVKIDRISPGDGA---TFPKTGDLVTIHYTGTLENGQK---FDSSVDR-GSPFQCNIG 57
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELL 378
G V +G+++ + + GE A +T P YAY P +P + + +++ELL
Sbjct: 58 VGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELL 110
Score = 28.9 bits (63), Expect = 6.1, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 75 KGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEEL 134
+G P + +G +++ G GIP + GE + + YG P P P + L
Sbjct: 48 RGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTIPGPYAYG----PRGFPGLIPPNSTL 103
Query: 135 HFEIEMI 141
F++E++
Sbjct: 104 VFDVELL 110
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 292 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 351
+ VHY G L + +K F ++ ND P EF G G+V +G++ V+ M G + +T P
Sbjct: 125 VSVHYTGWLTDGQK--FDSSKDRND--PFEFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 352 PDYAYDKFLRPANVPEGAHIQWEIELL 378
P Y +P A + +E+ELL
Sbjct: 181 PQLGYGARGAGGVIPPNATLVFEVELL 207
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 51 VAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMK 110
V+ H T DG +S++ + P VLG ++ G EG+ M G V +
Sbjct: 125 VSVHYTGWLTDGQKFDSSKD----RNDPFEFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 111 PQMHYGEDDCPVAAPSTFPKDEELHFEIEMID 142
PQ+ YG A P + L FE+E++D
Sbjct: 181 PQLGYG----ARGAGGVIPPNATLVFEVELLD 208
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
pdb|2VN1|B Chain B, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
Length = 129
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
++ DG +IK ++ G E + P + + VHY G L E +D+ D + P +
Sbjct: 11 ELTADGGVIKTILKKGD-EGEENIPKKGNEVTVHYVGKL--ESTGKVFDSSFDRN-VPFK 66
Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 380
F +G V +G+++CV M E LV Y Y ++P + + +EIELL F
Sbjct: 67 FHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35
From Plasmodium Falciparum
Length = 135
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
++ DG +IK ++ G E + P + + VHY G L E +D+ D + P +
Sbjct: 11 ELTADGGVIKTILKKGD-EGEENIPKKGNEVTVHYVGKL--ESTGKVFDSSFDRN-VPFK 66
Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 380
F +G V +G+++CV M E LV Y Y ++P + + +EIELL F
Sbjct: 67 FHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 292 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 351
+ VHY G L + +K +D+ D + P F G G+V +G++ V+ M G + +T P
Sbjct: 33 VSVHYTGWLTDGQK---FDSSKDRN-DPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 88
Query: 352 PDYAYDKFLRPANVPEGAHIQWEIELL 378
P Y +P A + +E+ELL
Sbjct: 89 PQLGYGARGAGGVIPPNATLVFEVELL 115
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 51 VAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMK 110
V+ H T DG +S++ + P VLG ++ G EG+ M G V +
Sbjct: 33 VSVHYTGWLTDGQKFDSSKD----RNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 88
Query: 111 PQMHYGEDDCPVAAPSTFPKDEELHFEIEMID 142
PQ+ YG A P + L FE+E++D
Sbjct: 89 PQLGYGAR----GAGGVIPPNATLVFEVELLD 116
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 292 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 351
+ VHY G L + +K +D+ D + P F G G+V +G++ V+ M G + +T P
Sbjct: 49 VSVHYTGWLTDGQK---FDSSKDRN-DPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 104
Query: 352 PDYAYDKFLRPANVPEGAHIQWEIELL 378
P Y +P A + +E+ELL
Sbjct: 105 PQLGYGARGAGGVIPPNATLVFEVELL 131
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 51 VAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMK 110
V+ H T DG +S++ + P VLG ++ G EG+ M G V +
Sbjct: 49 VSVHYTGWLTDGQKFDSSKD----RNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 104
Query: 111 PQMHYGEDDCPVAAPSTFPKDEELHFEIEMID 142
PQ+ YG A P + L FE+E++D
Sbjct: 105 PQLGYGAR----GAGGVIPPNATLVFEVELLD 132
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 292 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 351
+ VHY G L + +K F ++ ND P F G G+V +G++ V+ M G + +T P
Sbjct: 125 VSVHYTGWLTDGQK--FDSSKDRND--PFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 352 PDYAYDKFLRPANVPEGAHIQWEIELL 378
P Y +P A + +E+ELL
Sbjct: 181 PQLGYGARGAAGVIPPNATLVFEVELL 207
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 51 VAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMK 110
V+ H T DG +S++ + P VLG ++ G EG+ M G V +
Sbjct: 125 VSVHYTGWLTDGQKFDSSKD----RNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 111 PQMHYGEDDCPVAAPSTFPKDEELHFEIEMID 142
PQ+ YG A P + L FE+E++D
Sbjct: 181 PQLGYG----ARGAAGVIPPNATLVFEVELLD 208
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 292 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 351
+ VHY G L + +K F ++ ND P F G G+V +G++ V+ M G + +T P
Sbjct: 125 VSVHYTGWLTDGQK--FGSSKDRND--PFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 352 PDYAYDKFLRPANVPEGAHIQWEIELL 378
P Y +P A + +E+ELL
Sbjct: 181 PQLGYGARGAGGVIPPNATLVFEVELL 207
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 51 VAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMK 110
V+ H T DG S++ + P VLG ++ G EG+ M G V +
Sbjct: 125 VSVHYTGWLTDGQKFGSSKD----RNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 111 PQMHYGEDDCPVAAPSTFPKDEELHFEIEMID 142
PQ+ YG A P + L FE+E++D
Sbjct: 181 PQLGYG----ARGAGGVIPPNATLVFEVELLD 208
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2
pdb|2PBC|B Chain B, Fk506-Binding Protein 2
pdb|2PBC|C Chain C, Fk506-Binding Protein 2
pdb|2PBC|D Chain D, Fk506-Binding Protein 2
Length = 102
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 291 LLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTC 350
+L +HY G L E +D+ + + QP FS G G V +G++ + M GE +
Sbjct: 11 VLHMHYTGKL---EDGTEFDSSLPQN-QPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVI 66
Query: 351 PPDYAYDKFLRPANVPEGAHIQWEIELLGFEK 382
P + Y + P +P GA + +E+ELL E+
Sbjct: 67 PSELGYGERGAPPKIPGGATLVFEVELLKIER 98
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 54 HCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQM 113
H T + DG +S+ + P LG +++ G +G+ M +GE + ++
Sbjct: 15 HYTGKLEDGTEFDSSLPQ----NQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSEL 70
Query: 114 HYGEDDCPVAAPSTFPKDEELHFEIEMIDFAK 145
YGE P P L FE+E++ +
Sbjct: 71 GYGERGA----PPKIPGGATLVFEVELLKIER 98
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 292 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 351
+ VHY G L + +K F ++ ND P F G G+V +G++ V+ M G + +T P
Sbjct: 125 VSVHYTGWLTDGQK--FDSSKDRND--PFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 352 PDYAYDKFLRPANVPEGAHIQWEIELL 378
P Y +P A + +E+ELL
Sbjct: 181 PQLGYGARGAGGVIPPNATLVFEVELL 207
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 51 VAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMK 110
V+ H T DG +S++ + P VLG ++ G EG+ M G V +
Sbjct: 125 VSVHYTGWLTDGQKFDSSKD----RNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 111 PQMHYGEDDCPVAAPSTFPKDEELHFEIEMID 142
PQ+ YG A P + L FE+E++D
Sbjct: 181 PQLGYG----ARGAGGVIPPNATLVFEVELLD 208
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 292 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 351
+ VHY G L + +K F ++ ND P F G G+V +G++ V+ M G + +T P
Sbjct: 125 VSVHYTGWLTDGQK--FDSSKDRND--PFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 352 PDYAYDKFLRPANVPEGAHIQWEIELL 378
P Y +P A + +E+ELL
Sbjct: 181 PQLGYGARGAGGVIPPNATLVFEVELL 207
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 51 VAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMK 110
V+ H T DG +S++ + P VLG ++ G EG+ M G V +
Sbjct: 125 VSVHYTGWLTDGQKFDSSKD----RNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 111 PQMHYGEDDCPVAAPSTFPKDEELHFEIEMID 142
PQ+ YG A P + L FE+E++D
Sbjct: 181 PQLGYG----ARGAGGVIPPNATLVFEVELLD 208
>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
pdb|2F4E|B Chain B, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
Length = 180
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 62/124 (50%), Gaps = 12/124 (9%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
D ++ K+ I++G G P S +HY+ N + K F DT ++ QP+E G
Sbjct: 48 DEKVSKQIIKEGHGSKPSKY----STCFLHYRAWTKNSQHK-FEDTW--HEQQPIELVLG 100
Query: 326 -EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDK---FLRPANVPEGAHIQWEIELLGFE 381
E G + V M GE ALV + AY K F P NVP A + +E+E++GF+
Sbjct: 101 KEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFP-NVPPMADLLYEVEVIGFD 159
Query: 382 KPKD 385
+ K+
Sbjct: 160 ETKE 163
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 78 PIRHVLGKSKI-LLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHF 136
PI VLGK K L GL G+ +M GE ++ + ++ YG++ + P+ P +L +
Sbjct: 94 PIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGN-FSFPNVPPM-ADLLY 151
Query: 137 EIEMIDFAKAK 147
E+E+I F + K
Sbjct: 152 EVEVIGFDETK 162
>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25
Length = 116
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 54 HC--TVRTLDGVIVES---TRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFK 108
HC T DG + ++ T ++ P+ +G K++ G E + TM KGE + +
Sbjct: 24 HCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLE 83
Query: 109 MKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
++P+ YG+ P A P + +L FE+E++D
Sbjct: 84 IEPEWAYGKKGQPDAK---IPPNAKLTFEVELVDI 115
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 283 MDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDN------DGQPLEFSSGEGLVPEGFEMC 336
+ P ++ Y G L + +DT + + +PL F G G V G++
Sbjct: 14 TNFPKKGDVVHCWYTGTL---QDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEA 70
Query: 337 VRLMLPGEIALVTCPPDYAYDKFLRP-ANVPEGAHIQWEIELLGFE 381
+ M GE A + P++AY K +P A +P A + +E+EL+ +
Sbjct: 71 LLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDID 116
>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex
Length = 119
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 54 HC--TVRTLDGVIVES---TRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFK 108
HC T DG + ++ T S+ P+ +G K++ G E + TM KGE + +
Sbjct: 27 HCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLE 86
Query: 109 MKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
++P+ YG+ P A P + +L FE+E++D
Sbjct: 87 IEPEWAYGKKGQPDAK---IPPNTKLIFEVELVDI 118
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 283 MDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDN------DGQPLEFSSGEGLVPEGFEMC 336
+ P ++ Y G L + +DT + + +PL F G G V G++
Sbjct: 17 TNFPKKGDVVHCWYTGTLPDG---TVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEA 73
Query: 337 VRLMLPGEIALVTCPPDYAYDKFLRP-ANVPEGAHIQWEIELLGFE 381
+ M GE A + P++AY K +P A +P + +E+EL+ +
Sbjct: 74 LLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDID 119
>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6
Length = 134
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 7/122 (5%)
Query: 259 QVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQ 318
++ D+ GD ++K IR+G G D D+ + V Y G L + ++ +D+
Sbjct: 18 RMLDISGDRGVLKDVIREGAG----DLVAPDASVLVKYSGYLEHMDRP--FDSNYFRK-T 70
Query: 319 PLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELL 378
P GE + G E+ + M GE+A P+YAY P +P + +EIELL
Sbjct: 71 PRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELL 130
Query: 379 GF 380
F
Sbjct: 131 DF 132
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 83 LGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMID 142
LG+ L G+ G+ +M +GE++ F KP YG C P P + + FEIE++D
Sbjct: 76 LGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGC----PPLIPPNTTVLFEIELLD 131
Query: 143 F 143
F
Sbjct: 132 F 132
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ2|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 292 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 351
+ VHY G L + +K +D+ D + P F G G+V +G++ V+ M G + +T P
Sbjct: 29 VSVHYTGWLTDGQK---FDSSKDRN-DPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 84
Query: 352 PDYAYDKFLRPANVPEGAHIQWEIELL 378
P Y +P A + +E+ELL
Sbjct: 85 PQLGYGAGGAGGVIPPNATLVFEVELL 111
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 51 VAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMK 110
V+ H T DG +S++ + P VLG ++ G EG+ M G V +
Sbjct: 29 VSVHYTGWLTDGQKFDSSKD----RNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 84
Query: 111 PQMHYGEDDCPVAAPSTFPKDEELHFEIEMID 142
PQ+ Y A P + L FE+E++D
Sbjct: 85 PQLGY----GAGGAGGVIPPNATLVFEVELLD 112
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|B Chain B, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|C Chain C, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|D Chain D, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|E Chain E, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|F Chain F, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|G Chain G, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|H Chain H, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|I Chain I, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|J Chain J, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
Length = 125
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 291 LLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTC 350
L+ VHY+G L ++ +F+ T N+GQP+ F+ G +G++ ++ M GE +
Sbjct: 34 LMLVHYEGYL-EKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRKLII 92
Query: 351 PPDYAYDKFLRPANVPEGAHIQWEIELL 378
PP Y K + +P + + + I+LL
Sbjct: 93 PPALGYGKEGK-GKIPPESTLIFNIDLL 119
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 185 DGKLILS---HREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV 228
DG L S H G+P +FT G E KG + G+ M EK + +
Sbjct: 46 DGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRKLII 92
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 38.1 bits (87), Expect = 0.009, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 294 VHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPD 353
VHY G L + +K +D+ D + P F G G V +G++ V+ M G + +T PP
Sbjct: 31 VHYTGWLTDGQK---FDSSKDRN-DPFAFVLGGGHVIKGWDEGVQGMKVGGVRRLTIPPQ 86
Query: 354 YAYDKFLRPANVPEGAHIQWEIELL 378
Y +P A + +E+ELL
Sbjct: 87 LGYGARGAGGVIPPNATLVFEVELL 111
Score = 37.4 bits (85), Expect = 0.018, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 51 VAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMK 110
V+ H T DG +S++ + P VLG ++ G EG+ M G V +
Sbjct: 29 VSVHYTGWLTDGQKFDSSKD----RNDPFAFVLGGGHVIKGWDEGVQGMKVGGVRRLTIP 84
Query: 111 PQMHYGEDDCPVAAPSTFPKDEELHFEIEMID 142
PQ+ YG A P + L FE+E++D
Sbjct: 85 PQLGYGAR----GAGGVIPPNATLVFEVELLD 112
>pdb|2F2D|A Chain A, Solution Structure Of The Fk506-Binding Domain Of Human
Fkbp38
pdb|3EY6|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Human
Fkbp38
Length = 121
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 10/116 (8%)
Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
D+LG+G L K+ + G P+ ++ VH + L N TRV + + L
Sbjct: 6 DILGNGLLRKKTLVPGPPGSSR--PVKGQVVTVHLQTSLEN-------GTRVQEEPE-LV 55
Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIEL 377
F+ G+ V + ++ V LM GE A+VT Y Y R +P A + E+ L
Sbjct: 56 FTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTL 111
>pdb|2AWG|A Chain A, Structure Of The Ppiase Domain Of The Human Fk506-Binding
Protein 8
Length = 118
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 10/116 (8%)
Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
D+LG+G L K+ + G P+ ++ VH + L N TRV + + L
Sbjct: 8 DILGNGLLRKKTLVPGPPGSSR--PVKGQVVTVHLQTSLEN-------GTRVQEEPE-LV 57
Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIEL 377
F+ G+ V + ++ V LM GE A+VT Y Y R +P A + E+ L
Sbjct: 58 FTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTL 113
>pdb|2LKN|A Chain A, Solution Structure Of The Ppiase Domain Of Human
Aryl-Hydrocarbon Receptor-Interacting Protein (Aip)
Length = 165
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 271 KRRIRDGKGEFPMDCPLHD-SLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLV 329
KR I++G+GE P D + HY+ + ++E V D+R G+P+E G+
Sbjct: 14 KRVIQEGRGELP---DFQDGTKATFHYRTLHSDDEGTVLDDSRAR--GKPMELIIGKKFK 68
Query: 330 PEGFEMCVRLMLPGEIALVTC 350
+E V M GEIA C
Sbjct: 69 LPVWETIVCTMREGEIAQFLC 89
>pdb|1IX5|A Chain A, Solution Structure Of The Methanococcus
Thermolithotrophicus Fkbp
Length = 151
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 314 DNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY 356
D + +PLEF GEG + +GFE V M G+ V P + AY
Sbjct: 39 DREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY 81
>pdb|2JWX|A Chain A, Solution Structure Of The N-Terminal Domain Of Human
Fkbp38 (Fkbp38ntd)
Length = 157
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
D+LG+G L K+ + G P+ ++ VH + L N TRV + + L
Sbjct: 38 DILGNGLLRKKTLVPGPPGSSR--PVKGQVVTVHLQTSLEN-------GTRVQEEPE-LV 87
Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY-DKFLRPANVPEGAHIQWEIEL 377
F+ G+ V + ++ V LM GE A+VT Y Y + R +P A + E+ L
Sbjct: 88 FTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTL 144
>pdb|2D9F|A Chain A, Solution Structure Of Ruh-047, An Fkbp Domain From Human
Cdna
Length = 135
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
D+LG+G L K+ + G P+ ++ VH + L N TRV + + L
Sbjct: 12 DILGNGLLRKKTLVPGPPGSSR--PVKGQVVTVHLQTSLEN-------GTRVQEEPE-LV 61
Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYD-KFLRPANVPEGAHIQWEIEL 377
F+ G+ V + ++ V LM GE A+VT Y Y + R +P A + E+ L
Sbjct: 62 FTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTL 118
>pdb|4DT4|A Chain A, Crystal Structure Of The Ppiase-Chaperone Slpa With The
Chaperone Binding Site Occupied By The Linker Of The
Purification Tag
Length = 169
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 51 VAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMK 110
V H T++ DG ESTR+ G P LG + + GL + + + G+ + F ++
Sbjct: 31 VLVHFTLKLDDGTTAESTRN----NGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLE 86
Query: 111 PQMHYG 116
P +G
Sbjct: 87 PDAAFG 92
>pdb|3UOT|A Chain A, Crystal Structure Of Mdc1 Fha Domain In Complex With A
Phosphorylated Peptide From The Mdc1 N-Terminus
pdb|3UOT|B Chain B, Crystal Structure Of Mdc1 Fha Domain In Complex With A
Phosphorylated Peptide From The Mdc1 N-Terminus
Length = 122
Score = 30.4 bits (67), Expect = 2.1, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 16/84 (19%)
Query: 113 MHYGED------DCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGW 166
+H G++ DC VA P FP + H EIE++ + KA I+ D G
Sbjct: 33 LHLGKNVVGRXPDCSVALP--FPSISKQHAEIEILAWDKAPILRD--------CGSLNGT 82
Query: 167 ETPRAPYEVKAWISAKTGDGKLIL 190
+ R P + +S + D +LIL
Sbjct: 83 QILRPPKVLSPGVSHRLRDQELIL 106
>pdb|3UN0|B Chain B, Crystal Structure Of Mdc1 Fha Domain
pdb|3UN0|A Chain A, Crystal Structure Of Mdc1 Fha Domain
Length = 115
Score = 30.0 bits (66), Expect = 2.4, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 119 DCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAW 178
DC VA P FP + H EIE++ + KA I+ D G + R P +
Sbjct: 38 DCSVALP--FPSISKQHAEIEILAWDKAPILRD--------CGSLNGTQILRPPKVLSPG 87
Query: 179 ISAKTGDGKLIL 190
+S + D +LIL
Sbjct: 88 VSHRLRDQELIL 99
>pdb|3UMZ|A Chain A, Crystal Structure Of The Human Mdc1 Fha Domain
pdb|3UMZ|B Chain B, Crystal Structure Of The Human Mdc1 Fha Domain
pdb|3UNM|A Chain A, Crystal Structure Of The Human Mdc1 Fha Domain
pdb|3UNM|B Chain B, Crystal Structure Of The Human Mdc1 Fha Domain
pdb|3UNN|A Chain A, Monomeric Structure Of The Human Mdc1 Fha Domain In
Complex With An Mdc1 Phospho-T4 Peptide
Length = 113
Score = 30.0 bits (66), Expect = 2.4, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 119 DCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAW 178
DC VA P FP + H EIE++ + KA I+ D G + R P +
Sbjct: 36 DCSVALP--FPSISKQHAEIEILAWDKAPILRD--------CGSLNGTQILRPPKVLSPG 85
Query: 179 ISAKTGDGKLIL 190
+S + D +LIL
Sbjct: 86 VSHRLRDQELIL 97
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13
pdb|1U79|B Chain B, Crystal Structure Of Atfkbp13
pdb|1U79|C Chain C, Crystal Structure Of Atfkbp13
pdb|1U79|D Chain D, Crystal Structure Of Atfkbp13
pdb|1U79|E Chain E, Crystal Structure Of Atfkbp13
pdb|1Y0O|A Chain A, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|B Chain B, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|C Chain C, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|D Chain D, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|E Chain E, Crystal Structure Of Reduced Atfkbp13
Length = 129
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 75 KGIPIRHVLGKSKILLGL------LEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTF 128
+G P+ +G +++ G +GIP ML G ++ P++ YG+ S
Sbjct: 53 RGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCL 112
Query: 129 -PKDEELHFEIEMIDFA 144
P L F+IE I A
Sbjct: 113 IPPASVLLFDIEYIGKA 129
>pdb|1ROV|A Chain A, Lipoxygenase-3 Treated With Cumene Hydroperoxide
Length = 857
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 58 RTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMK 110
R++ ++ +T+++ GKG LGK+ L G++ +PT+ G+ S FK+
Sbjct: 56 RSVSLQLISATKADANGKG-----KLGKATFLEGIITSLPTLGAGQ-SAFKIN 102
>pdb|1IK3|A Chain A, Lipoxygenase-3 (Soybean) Complex With 13(S)-Hydroperoxy-
9(Z),11(E)-Octadecadienoic Acid
pdb|1HU9|A Chain A, Lipoxygenase-3 (Soybean) Complex With 4-Hydroperoxy-2-
Methoxy-Phenol
pdb|1JNQ|A Chain A, Lipoxygenase-3 (Soybean) Complex With Epigallocathechin
(Egc)
pdb|1N8Q|A Chain A, Lipoxygenase In Complex With Protocatechuic Acid
pdb|1NO3|A Chain A, Refined Structure Of Soybean Lipoxygenase-3 With
4-nitrocatechol At 2.15 Angstrom Resolution
pdb|1RRH|A Chain A, Soybean Lipoxygenase (Lox-3) At Ambient Temperatures At
2.0 A Resolution
pdb|1RRL|A Chain A, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
pdb|1RRL|B Chain B, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
pdb|1LNH|A Chain A, Lipoxygenase-3(Soybean) Non-Heme Fe(Ii) Metalloprotein
Length = 857
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 58 RTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMK 110
R++ ++ +T+++ GKG LGK+ L G++ +PT+ G+ S FK+
Sbjct: 56 RSVSLQLISATKADANGKG-----KLGKATFLEGIITSLPTLGAGQ-SAFKIN 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.140 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,440,755
Number of Sequences: 62578
Number of extensions: 599995
Number of successful extensions: 1454
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1259
Number of HSP's gapped (non-prelim): 163
length of query: 434
length of database: 14,973,337
effective HSP length: 102
effective length of query: 332
effective length of database: 8,590,381
effective search space: 2852006492
effective search space used: 2852006492
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)