Query 013896
Match_columns 434
No_of_seqs 330 out of 2996
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 08:28:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013896.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013896hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0543 FKBP-type peptidyl-pro 100.0 9.8E-45 2.1E-49 348.3 25.9 239 161-432 1-242 (397)
2 KOG0549 FKBP-type peptidyl-pro 100.0 1.4E-31 3.1E-36 230.0 16.4 176 200-384 1-179 (188)
3 KOG0549 FKBP-type peptidyl-pro 100.0 8E-30 1.7E-34 219.2 16.0 171 81-259 1-177 (188)
4 KOG0543 FKBP-type peptidyl-pro 100.0 1.3E-28 2.7E-33 237.2 20.0 186 37-258 1-190 (397)
5 KOG0544 FKBP-type peptidyl-pro 100.0 3.2E-28 7E-33 184.8 11.8 106 268-380 2-107 (108)
6 COG0545 FkpA FKBP-type peptidy 99.9 1.1E-27 2.4E-32 210.8 12.6 114 20-144 92-205 (205)
7 KOG0544 FKBP-type peptidyl-pro 99.9 1.9E-27 4E-32 180.7 11.8 107 30-144 2-108 (108)
8 COG0545 FkpA FKBP-type peptidy 99.9 6.2E-25 1.3E-29 193.4 12.1 106 265-380 99-204 (205)
9 PRK11570 peptidyl-prolyl cis-t 99.9 1.1E-23 2.4E-28 191.9 14.2 114 20-144 93-206 (206)
10 KOG0552 FKBP-type peptidyl-pro 99.9 1.4E-23 3E-28 189.6 12.8 120 14-144 105-226 (226)
11 TIGR03516 ppisom_GldI peptidyl 99.9 3E-22 6.6E-27 178.1 13.7 111 24-144 64-176 (177)
12 PRK10902 FKBP-type peptidyl-pr 99.9 3.2E-21 6.9E-26 182.0 14.3 116 20-147 137-252 (269)
13 PRK11570 peptidyl-prolyl cis-t 99.8 3.1E-20 6.7E-25 169.3 13.8 106 265-380 100-205 (206)
14 KOG0552 FKBP-type peptidyl-pro 99.8 5.5E-20 1.2E-24 166.3 11.9 108 265-381 118-226 (226)
15 PF00254 FKBP_C: FKBP-type pep 99.8 1.2E-19 2.6E-24 145.7 12.3 94 41-141 1-94 (94)
16 TIGR03516 ppisom_GldI peptidyl 99.8 1.4E-19 3.1E-24 161.0 13.9 110 265-381 67-176 (177)
17 KOG0545 Aryl-hydrocarbon recep 99.8 7.6E-21 1.6E-25 171.2 5.7 164 265-432 8-212 (329)
18 PF00254 FKBP_C: FKBP-type pep 99.8 1.6E-18 3.5E-23 139.2 11.4 91 284-378 3-94 (94)
19 PRK10902 FKBP-type peptidyl-pr 99.8 7.7E-18 1.7E-22 159.1 14.3 109 265-384 144-252 (269)
20 PRK15095 FKBP-type peptidyl-pr 99.6 3.8E-14 8.3E-19 123.8 12.2 84 44-143 4-87 (156)
21 PRK15095 FKBP-type peptidyl-pr 99.5 2.4E-14 5.1E-19 125.1 10.0 70 286-359 5-74 (156)
22 COG1047 SlpA FKBP-type peptidy 99.5 5.4E-13 1.2E-17 116.1 11.5 86 44-145 2-87 (174)
23 COG1047 SlpA FKBP-type peptidy 99.4 1.1E-12 2.4E-17 114.2 11.0 69 287-359 4-72 (174)
24 PRK10737 FKBP-type peptidyl-pr 99.4 1.4E-12 2.9E-17 117.2 11.7 83 44-143 2-84 (196)
25 PRK10737 FKBP-type peptidyl-pr 99.4 1E-12 2.3E-17 117.9 9.6 68 287-359 4-71 (196)
26 TIGR00115 tig trigger factor. 98.7 3.3E-08 7.1E-13 100.6 9.0 98 45-158 147-244 (408)
27 TIGR00115 tig trigger factor. 98.6 4.3E-07 9.3E-12 92.5 13.8 87 286-384 147-233 (408)
28 PRK01490 tig trigger factor; P 98.6 1.1E-07 2.5E-12 97.5 9.0 97 45-157 158-254 (435)
29 PRK01490 tig trigger factor; P 98.5 1.6E-06 3.5E-11 89.0 14.0 86 286-383 158-243 (435)
30 COG0544 Tig FKBP-type peptidyl 98.5 3.4E-07 7.4E-12 92.9 7.4 98 45-158 158-255 (441)
31 COG0544 Tig FKBP-type peptidyl 98.4 4.9E-06 1.1E-10 84.6 12.9 86 287-384 159-244 (441)
32 KOG0545 Aryl-hydrocarbon recep 97.7 1.2E-05 2.5E-10 73.8 0.7 83 25-111 6-91 (329)
33 KOG4648 Uncharacterized conser 96.8 0.00096 2.1E-08 64.2 3.4 37 390-426 89-125 (536)
34 KOG0547 Translocase of outer m 96.5 0.0027 5.9E-08 63.8 4.5 41 387-427 104-144 (606)
35 KOG4234 TPR repeat-containing 96.5 0.0038 8.3E-08 56.0 4.7 37 392-428 89-125 (271)
36 TIGR00990 3a0801s09 mitochondr 96.3 0.0052 1.1E-07 66.1 5.8 64 364-428 94-157 (615)
37 KOG0553 TPR repeat-containing 95.4 0.021 4.5E-07 54.4 4.9 39 390-428 73-111 (304)
38 PF07719 TPR_2: Tetratricopept 94.4 0.1 2.3E-06 32.3 4.6 30 399-428 2-31 (34)
39 PF00515 TPR_1: Tetratricopept 94.1 0.13 2.8E-06 32.0 4.6 29 399-427 2-30 (34)
40 PF13176 TPR_7: Tetratricopept 93.4 0.16 3.5E-06 32.4 4.1 27 401-427 2-28 (36)
41 KOG0546 HSP90 co-chaperone CPR 92.2 0.12 2.6E-06 50.4 3.1 41 390-430 214-254 (372)
42 KOG0551 Hsp90 co-chaperone CNS 92.1 0.17 3.7E-06 49.0 4.0 34 394-427 77-110 (390)
43 PF13414 TPR_11: TPR repeat; P 91.6 0.22 4.7E-06 36.5 3.4 32 397-428 2-33 (69)
44 KOG0548 Molecular co-chaperone 88.6 0.53 1.2E-05 48.3 4.3 31 397-427 357-387 (539)
45 KOG0550 Molecular chaperone (D 88.5 0.41 8.8E-06 47.7 3.2 37 391-427 242-278 (486)
46 PF13181 TPR_8: Tetratricopept 88.2 1.3 2.9E-05 27.2 4.5 29 399-427 2-30 (34)
47 PF13374 TPR_10: Tetratricopep 87.8 1.4 3.1E-05 28.2 4.7 34 398-431 2-35 (42)
48 cd02681 MIT_calpain7_1 MIT: do 85.6 2 4.3E-05 32.6 4.9 35 396-430 4-38 (76)
49 cd02682 MIT_AAA_Arch MIT: doma 85.4 2.5 5.3E-05 32.0 5.3 38 395-432 3-40 (75)
50 cd02683 MIT_1 MIT: domain cont 84.3 2.3 5E-05 32.4 4.8 36 396-431 4-39 (77)
51 PF04212 MIT: MIT (microtubule 83.9 3.4 7.3E-05 30.5 5.5 37 395-431 2-38 (69)
52 PF13424 TPR_12: Tetratricopep 83.7 3.3 7.2E-05 30.9 5.6 34 397-430 4-37 (78)
53 cd02677 MIT_SNX15 MIT: domain 83.2 2.7 5.8E-05 31.8 4.7 37 395-431 3-39 (75)
54 cd02678 MIT_VPS4 MIT: domain c 82.7 3.3 7.2E-05 31.2 5.1 37 394-430 2-38 (75)
55 cd02684 MIT_2 MIT: domain cont 82.6 3 6.6E-05 31.5 4.8 37 395-431 3-39 (75)
56 KOG0550 Molecular chaperone (D 80.2 1.8 4E-05 43.2 3.6 52 373-428 28-79 (486)
57 PF13424 TPR_12: Tetratricopep 79.4 5.3 0.00011 29.7 5.3 36 394-429 42-77 (78)
58 cd02656 MIT MIT: domain contai 78.9 5.8 0.00013 29.7 5.4 37 395-431 3-39 (75)
59 smart00745 MIT Microtubule Int 76.7 7 0.00015 29.4 5.3 37 395-431 5-41 (77)
60 smart00028 TPR Tetratricopepti 76.4 3.5 7.7E-05 23.5 3.0 27 401-427 4-30 (34)
61 cd02680 MIT_calpain7_2 MIT: do 76.1 6.1 0.00013 29.9 4.6 36 395-430 3-38 (75)
62 PF13432 TPR_16: Tetratricopep 74.2 3.8 8.1E-05 29.3 3.1 23 404-426 3-25 (65)
63 PF13428 TPR_14: Tetratricopep 73.8 6.7 0.00015 25.9 4.0 27 401-427 4-30 (44)
64 PF13174 TPR_6: Tetratricopept 67.5 11 0.00024 22.4 3.8 27 401-427 3-29 (33)
65 PF13432 TPR_16: Tetratricopep 63.0 18 0.00039 25.6 4.7 31 397-427 30-60 (65)
66 PF13414 TPR_11: TPR repeat; P 61.4 17 0.00038 26.0 4.5 30 398-427 37-67 (69)
67 PF04010 DUF357: Protein of un 57.3 38 0.00082 25.6 5.6 41 390-430 27-67 (75)
68 PF14559 TPR_19: Tetratricopep 54.5 13 0.00027 26.6 2.7 21 408-428 1-21 (68)
69 KOG0553 TPR repeat-containing 53.4 16 0.00034 35.3 3.7 30 398-427 149-178 (304)
70 PF09976 TPR_21: Tetratricopep 51.7 12 0.00026 31.7 2.5 26 400-425 120-145 (145)
71 PF10579 Rapsyn_N: Rapsyn N-te 50.0 31 0.00068 26.4 4.1 35 396-430 4-38 (80)
72 PF08969 USP8_dimer: USP8 dime 48.0 58 0.0013 26.6 5.9 45 387-431 27-71 (115)
73 PF13371 TPR_9: Tetratricopept 47.8 28 0.00061 25.1 3.7 30 398-427 29-58 (73)
74 KOG0548 Molecular co-chaperone 46.9 28 0.00061 36.1 4.5 35 394-428 220-254 (539)
75 PF08631 SPO22: Meiosis protei 46.6 42 0.00091 32.1 5.6 40 388-427 236-275 (278)
76 PLN03098 LPA1 LOW PSII ACCUMUL 46.4 27 0.00059 35.7 4.4 35 393-427 70-104 (453)
77 KOG2114 Vacuolar assembly/sort 44.0 21 0.00045 39.1 3.2 33 398-430 368-400 (933)
78 PRK02603 photosystem I assembl 43.9 43 0.00092 29.2 4.8 34 394-427 31-64 (172)
79 PF09122 DUF1930: Domain of un 43.2 23 0.00049 25.6 2.3 23 209-231 35-57 (68)
80 PF10516 SHNi-TPR: SHNi-TPR; 43.1 52 0.0011 21.3 3.8 28 404-431 7-34 (38)
81 PF14938 SNAP: Soluble NSF att 42.0 38 0.00082 32.4 4.5 37 396-432 112-149 (282)
82 PF12895 Apc3: Anaphase-promot 41.1 46 0.00099 25.0 4.1 22 403-424 63-84 (84)
83 COG4387 Mu-like prophage prote 38.8 31 0.00067 28.5 2.7 22 413-434 82-103 (139)
84 PF07720 TPR_3: Tetratricopept 38.6 91 0.002 19.8 4.4 26 402-427 5-32 (36)
85 PF10602 RPN7: 26S proteasome 37.5 52 0.0011 29.2 4.3 31 398-428 36-66 (177)
86 KOG2003 TPR repeat-containing 35.0 17 0.00036 37.0 0.8 26 402-427 241-266 (840)
87 PF09122 DUF1930: Domain of un 34.3 44 0.00096 24.1 2.6 23 90-112 35-57 (68)
88 PF02071 NSF: Aromatic-di-Alan 33.6 21 0.00045 17.0 0.6 11 417-427 1-11 (12)
89 cd00189 TPR Tetratricopeptide 33.5 53 0.0011 23.4 3.3 22 404-425 6-27 (100)
90 PRK15359 type III secretion sy 33.2 53 0.0011 27.9 3.6 26 401-426 61-86 (144)
91 PRK10370 formate-dependent nit 32.4 62 0.0014 29.2 4.1 31 399-429 145-175 (198)
92 PF05942 PaREP1: Archaeal PaRE 30.5 90 0.002 25.5 4.4 36 394-429 2-37 (115)
93 PF13371 TPR_9: Tetratricopept 30.4 62 0.0014 23.2 3.2 23 406-428 3-25 (73)
94 COG1278 CspC Cold shock protei 29.6 1.6E+02 0.0034 21.8 4.9 20 162-181 13-33 (67)
95 PLN03088 SGT1, suppressor of 28.3 80 0.0017 31.5 4.4 30 399-428 71-100 (356)
96 TIGR02552 LcrH_SycD type III s 27.9 1E+02 0.0022 25.1 4.5 29 399-427 18-46 (135)
97 PF15015 NYD-SP12_N: Spermatog 27.4 1.8E+02 0.0039 29.8 6.4 38 391-431 172-209 (569)
98 PRK02603 photosystem I assembl 27.1 1.1E+02 0.0023 26.6 4.6 31 398-428 72-102 (172)
99 PRK15359 type III secretion sy 26.7 94 0.002 26.3 4.0 29 399-427 93-121 (144)
100 PF12690 BsuPI: Intracellular 26.6 98 0.0021 23.7 3.7 43 175-228 24-66 (82)
101 TIGR02795 tol_pal_ybgF tol-pal 26.4 1E+02 0.0022 24.1 4.1 27 401-427 42-68 (119)
102 PF13838 Clathrin_H_link: Clat 25.7 55 0.0012 24.1 2.0 21 401-421 9-29 (66)
103 KOG1840 Kinesin light chain [C 25.6 1.2E+02 0.0026 31.9 5.2 37 395-431 238-274 (508)
104 PF14853 Fis1_TPR_C: Fis1 C-te 25.1 1.1E+02 0.0024 21.3 3.4 24 404-427 7-30 (53)
105 PF07030 DUF1320: Protein of u 24.7 84 0.0018 26.3 3.3 21 414-434 84-104 (130)
106 PF15469 Sec5: Exocyst complex 23.2 92 0.002 27.6 3.4 26 406-431 94-119 (182)
107 PF00970 FAD_binding_6: Oxidor 23.2 3.5E+02 0.0075 20.7 9.1 70 156-230 17-94 (99)
108 PF13041 PPR_2: PPR repeat fam 22.9 1E+02 0.0023 20.4 2.9 21 406-426 11-31 (50)
109 PF11817 Foie-gras_1: Foie gra 22.6 1.1E+02 0.0024 28.7 4.0 30 401-430 181-210 (247)
110 TIGR03302 OM_YfiO outer membra 22.2 1.3E+02 0.0029 27.3 4.5 30 398-427 33-62 (235)
111 PF14938 SNAP: Soluble NSF att 22.2 1.4E+02 0.0031 28.4 4.8 38 393-430 30-67 (282)
112 PRK12450 foldase protein PrsA; 21.6 1.1E+02 0.0025 29.7 4.0 28 322-349 195-222 (309)
113 smart00386 HAT HAT (Half-A-TPR 21.4 98 0.0021 17.8 2.3 18 412-429 1-18 (33)
114 COG1849 Uncharacterized protei 21.4 3.3E+02 0.0071 21.4 5.5 41 390-430 33-73 (90)
115 TIGR00756 PPR pentatricopeptid 21.0 1.4E+02 0.003 17.3 3.0 21 406-426 8-28 (35)
116 PF01535 PPR: PPR repeat; Int 20.8 1.1E+02 0.0025 17.3 2.5 21 406-426 8-28 (31)
117 CHL00033 ycf3 photosystem I as 20.7 1.7E+02 0.0038 25.1 4.7 32 396-427 33-64 (168)
No 1
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-45 Score=348.29 Aligned_cols=239 Identities=38% Similarity=0.595 Sum_probs=219.2
Q ss_pred ecCCCCCCCCCCCeEEEEEEEEeCCCcEEeecCCCCCeEEEeCCCCccchHHHHHhcCccccEEEEEEeeeccCCCCCCC
Q 013896 161 NEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMP 240 (434)
Q Consensus 161 ~~G~g~~~p~~gd~V~v~y~~~~~dg~~~~s~~~~~p~~~~~g~~~~~~gl~~~l~~mk~Ge~~~~~v~~~~~~~~~~~~ 240 (434)
+.|.|+.+|..|+.|.+||++++.||+.|+|+.++.||.|.+|.|+++.||+.++.+|+.|+ ...|+
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d~~~~~~~lg~g~vi~~~~~gv~tm~~g~-------------~~~pp 67 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRDGDPFKFDLGKGSVIKGWDLGVATMKKGE-------------AGSPP 67 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccCCCceeeecCCCccccccccccccccccc-------------cCCCC
Confidence 36889999999999999999999999999999889999999999999999999999999833 25778
Q ss_pred CcCCCceEEEEEEeEEEEEeeeccCCcceEEEEEeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCcE
Q 013896 241 VVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPL 320 (434)
Q Consensus 241 ~ip~~~~l~~~vel~~~~~~~d~~~d~~~~k~il~~G~g~~~~~~P~~g~~V~v~y~~~~~~~~g~~~~ds~~~~~~~p~ 320 (434)
.+|++++|.|+|+|. |++|+|+|+++|.|. ..+|..|..|.|||.|++.+ + +|+++ ...|
T Consensus 68 ~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd--~~~P~~g~~V~v~~~G~~~~--~-~f~~~-----~~~f 127 (397)
T KOG0543|consen 68 KIPSNATLLFEVELL----------DGGIIKRIIREGEGD--YSRPNKGAVVKVHLEGELED--G-VFDQR-----ELRF 127 (397)
T ss_pred CCCCCcceeeeeccc----------CCceEEeeeecCCCC--CCCCCCCcEEEEEEEEEECC--c-ceecc-----ccce
Confidence 999999999999998 799999999999996 36799999999999999987 4 77443 3448
Q ss_pred EEEeCC-CCcchHHHHHHhcCCcccEEEEEecCCcccc-cCCCCCCCCCCceEEEEEEEeeee-cCCCCCCCChhhhHHH
Q 013896 321 EFSSGE-GLVPEGFEMCVRLMLPGEIALVTCPPDYAYD-KFLRPANVPEGAHIQWEIELLGFE-KPKDWTGLSFDGIMDE 397 (434)
Q Consensus 321 ~~~lG~-~~~~~gle~~l~~M~~Ge~~~v~v~~~~ayg-~~g~~~~ip~~~~l~f~ieLl~v~-~~~~~~~~~~~e~~~~ 397 (434)
+|.+|+ ..++.||+.+|++|++||++.|+|+|+|||| ..++++.|||+++|.|+|+|+++. +....|.|..+|++++
T Consensus 128 e~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e~l~~ 207 (397)
T KOG0543|consen 128 EFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKEDESWKMFAEERLEA 207 (397)
T ss_pred EEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcccccccchHHHHHH
Confidence 999998 5799999999999999999999999999999 556677999999999999999999 7888899999999999
Q ss_pred HHHHHHHHhHHHhcCcHHHHHHHHHHHHHHHhhhh
Q 013896 398 AEKIRVTGNRLFKEGKFELAKAKYEKVIFSVLKIA 432 (434)
Q Consensus 398 a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~l~~~~ 432 (434)
|.++|++||.+||+++|..|+.+|+||+.+|++..
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~ 242 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRR 242 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999998754
No 2
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.4e-31 Score=229.95 Aligned_cols=176 Identities=23% Similarity=0.336 Sum_probs=148.0
Q ss_pred EEeCCCCccchHHHHHhcCccccEEEEEEeeeccCCCCCCCCcCCCceEEEEEEeEEEEEe---eeccCCcceEEEEEeC
Q 013896 200 FTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQV---RDMLGDGRLIKRRIRD 276 (434)
Q Consensus 200 ~~~g~~~~~~gl~~~l~~mk~Ge~~~~~v~~~~~~~~~~~~~ip~~~~l~~~vel~~~~~~---~d~~~d~~~~k~il~~ 276 (434)
|++|.+.+++|+++++..|+.||+..+.+|++++|+... ...-..+++.+.++.+... .....+..+...++++
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I~v~~~ 77 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGG---RGDLNILVITILLVLLFRASAAEKWNPDEELQIGVLKK 77 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCcccccccc---cccccceEEEeeeeehhhhhhhhhcCCCCceeEEEEEC
Confidence 467889999999999999999999999999999999432 2223346777776665433 2334567777777777
Q ss_pred CCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCcEEEEeCCCCcchHHHHHHhcCCcccEEEEEecCCccc
Q 013896 277 GKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY 356 (434)
Q Consensus 277 G~g~~~~~~P~~g~~V~v~y~~~~~~~~g~~~~ds~~~~~~~p~~~~lG~~~~~~gle~~l~~M~~Ge~~~v~v~~~~ay 356 (434)
=... ......||++++||++.++| |++| ||++. +++|++|+||.+++|+|||++|.+||+||++.++|||++||
T Consensus 78 p~~C--~~kak~GD~l~~HY~g~leD--Gt~f-dSS~~-rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~LgY 151 (188)
T KOG0549|consen 78 PEEC--PEKAKKGDTLHVHYTGSLED--GTKF-DSSYS-RGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLGY 151 (188)
T ss_pred Cccc--cccccCCCEEEEEEEEEecC--CCEE-eeecc-CCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccccC
Confidence 3321 23357899999999999988 9999 88888 68999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCceEEEEEEEeeeecCC
Q 013896 357 DKFLRPANVPEGAHIQWEIELLGFEKPK 384 (434)
Q Consensus 357 g~~g~~~~ip~~~~l~f~ieLl~v~~~~ 384 (434)
|++|.++.||++++|+|+|||+++.+.+
T Consensus 152 G~~G~~~~IP~~A~LiFdiELv~i~~~~ 179 (188)
T KOG0549|consen 152 GERGAPPKIPGDAVLIFDIELVKIERGP 179 (188)
T ss_pred ccCCCCCCCCCCeeEEEEEEEEEeecCC
Confidence 9999998999999999999999999864
No 3
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8e-30 Score=219.18 Aligned_cols=171 Identities=20% Similarity=0.301 Sum_probs=142.5
Q ss_pred EEcCCCcccccHHHhhcCCCCCcEEEEEEecccccCCCCCCCCCCCCCCCcceEEEEEEEEeeeeccccc---ccccE-E
Q 013896 81 HVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIA---DDFGV-V 156 (434)
Q Consensus 81 ~~lG~~~~i~g~~~al~~m~~Ge~~~i~ip~~~ayG~~g~~~~~~~~ip~~~~lv~~i~l~~i~~~~~~~---~d~g~-~ 156 (434)
|++|.+++++|++++|.+|+.||++++++||+++||..+.. .-..++|.+.++.+....... .+..+ +
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I 72 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG--------DLNILVITILLVLLFRASAAEKWNPDEELQI 72 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCcccccccccc--------cccceEEEeeeeehhhhhhhhhcCCCCceeE
Confidence 45788999999999999999999999999999999965532 235678888888776554322 22333 2
Q ss_pred EEeeecCCCCCCCCCCCeEEEEEEEEeCCCcEEeec-CCCCCeEEEeCCCCccchHHHHHhcCccccEEEEEEeeeccCC
Q 013896 157 KKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSH-REGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTP 235 (434)
Q Consensus 157 k~i~~~G~g~~~p~~gd~V~v~y~~~~~dg~~~~s~-~~~~p~~~~~g~~~~~~gl~~~l~~mk~Ge~~~~~v~~~~~~~ 235 (434)
....+.-.+..+.+.||.+.+||++.+.||++|||| .++.|+.|+||.+++++|||+||..|++||++++.|||+++||
T Consensus 73 ~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~LgYG 152 (188)
T KOG0549|consen 73 GVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLGYG 152 (188)
T ss_pred EEEECCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccccCc
Confidence 222222336688999999999999999999999996 5789999999999999999999999999999999999999999
Q ss_pred CC-CCCCcCCCceEEEEEEeEEEEE
Q 013896 236 SP-LMPVVEGCEEVHFEVELVHLIQ 259 (434)
Q Consensus 236 ~~-~~~~ip~~~~l~~~vel~~~~~ 259 (434)
+. .++.||+++.|.|||||+.+.+
T Consensus 153 ~~G~~~~IP~~A~LiFdiELv~i~~ 177 (188)
T KOG0549|consen 153 ERGAPPKIPGDAVLIFDIELVKIER 177 (188)
T ss_pred cCCCCCCCCCCeeEEEEEEEEEeec
Confidence 85 4677999999999999999864
No 4
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.3e-28 Score=237.24 Aligned_cols=186 Identities=32% Similarity=0.547 Sum_probs=170.4
Q ss_pred ecCCCCCCCCCCCEEEEEEEEEECCCcEEEeeccCCCCCCccEEEEcCCCcccccHHHhhcCCCCCcEEEEEEecccccC
Q 013896 37 RPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYG 116 (434)
Q Consensus 37 ~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~p~~~~lG~~~~i~g~~~al~~m~~Ge~~~i~ip~~~ayG 116 (434)
++|+|..+|..||.|.+||++++.||+.|+||.+ +.|+.|.+|.++++.||..++..|+. |
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-----~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g 61 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-----GDPFKFDLGKGSVIKGWDLGVATMKK--------------G 61 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccC-----CCceeeecCCCccccccccccccccc--------------c
Confidence 4789998899999999999999999999999986 67999999999999999999999998 5
Q ss_pred CCCCCCCCCCCCCCcceEEEEEEEEeeeecccccccccEEEEeeecCCC-CCCCCCCCeEEEEEEEEeCCCcEEeecCCC
Q 013896 117 EDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQG-WETPRAPYEVKAWISAKTGDGKLILSHREG 195 (434)
Q Consensus 117 ~~g~~~~~~~~ip~~~~lv~~i~l~~i~~~~~~~~d~g~~k~i~~~G~g-~~~p~~gd~V~v~y~~~~~dg~~~~s~~~~ 195 (434)
+.+. ||.||++++|.|+|+|+ |++++|+|++.|.| ...|..|..|++||.+++.++ +|+++.
T Consensus 62 ~~~~----pp~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~-- 124 (397)
T KOG0543|consen 62 EAGS----PPKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQRE-- 124 (397)
T ss_pred ccCC----CCCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceeccc--
Confidence 5554 48999999999999999 89999999999999 899999999999999999888 777653
Q ss_pred CCeEEEeCC-CCccchHHHHHhcCccccEEEEEEeeeccCCC--CCCCCcCCCceEEEEEEeEEEE
Q 013896 196 EPYFFTFGK-SEVPKGLEMGIGTMTREEKAVIYVTSQYLTPS--PLMPVVEGCEEVHFEVELVHLI 258 (434)
Q Consensus 196 ~p~~~~~g~-~~~~~gl~~~l~~mk~Ge~~~~~v~~~~~~~~--~~~~~ip~~~~l~~~vel~~~~ 258 (434)
..|.|.+|. ..++.||+.||..|++||.+.|+|+++|+||+ +.++.||||+.|.|+|+|+++.
T Consensus 125 ~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~ 190 (397)
T KOG0543|consen 125 LRFEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFE 190 (397)
T ss_pred cceEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCCCCCCCCCceEEEEEEEEeee
Confidence 237888887 57999999999999999999999999999994 4679999999999999999995
No 5
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.2e-28 Score=184.85 Aligned_cols=106 Identities=36% Similarity=0.607 Sum_probs=100.1
Q ss_pred ceEEEEEeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCcEEEEeCCCCcchHHHHHHhcCCcccEEE
Q 013896 268 RLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIAL 347 (434)
Q Consensus 268 ~~~k~il~~G~g~~~~~~P~~g~~V~v~y~~~~~~~~g~~~~ds~~~~~~~p~~~~lG~~~~~~gle~~l~~M~~Ge~~~ 347 (434)
++.+.+|.+|+|. ..|..|++|++||++.+.| |+.| ||+.| ++.||.|.+|.+.+|.||++++..|.+||+++
T Consensus 2 Gv~~~~i~~Gdg~---tfpK~Gqtvt~hYtg~L~d--G~kf-DSs~d-r~kPfkf~IGkgeVIkGwdegv~qmsvGekak 74 (108)
T KOG0544|consen 2 GVEKQVISPGDGR---TFPKKGQTVTVHYTGTLQD--GKKF-DSSRD-RGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAK 74 (108)
T ss_pred CceeEEeeCCCCc---ccCCCCCEEEEEEEeEecC--CcEe-ecccc-cCCCeeEEecCcceeechhhcchhccccccce
Confidence 4778999999996 4489999999999999998 9999 88888 68999999999999999999999999999999
Q ss_pred EEecCCcccccCCCCCCCCCCceEEEEEEEeee
Q 013896 348 VTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 380 (434)
Q Consensus 348 v~v~~~~ayg~~g~~~~ip~~~~l~f~ieLl~v 380 (434)
++|+|+||||..|.+..||||++|+|+||||++
T Consensus 75 Lti~pd~aYG~~G~p~~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 75 LTISPDYAYGPRGHPGGIPPNATLVFDVELLKV 107 (108)
T ss_pred eeeccccccCCCCCCCccCCCcEEEEEEEEEec
Confidence 999999999999998899999999999999987
No 6
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.1e-27 Score=210.78 Aligned_cols=114 Identities=31% Similarity=0.622 Sum_probs=107.2
Q ss_pred cccCeeecCCceEEEEEecCCCCCCCCCCCEEEEEEEEEECCCcEEEeeccCCCCCCccEEEEcCCCcccccHHHhhcCC
Q 013896 20 DKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTM 99 (434)
Q Consensus 20 ~~~~~~~~~~gl~~~i~~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~p~~~~lG~~~~i~g~~~al~~m 99 (434)
.....+++++||.|++++.|+|.. |..+|.|.+||++++.||++||||++ +++|+.|.+| ++|+||.++|.+|
T Consensus 92 k~~~v~~~~sgl~y~~~~~G~G~~-~~~~~~V~vhY~G~l~~G~vFDsS~~----rg~p~~f~l~--~vI~Gw~egl~~M 164 (205)
T COG0545 92 KEKGVKTLPSGLQYKVLKAGDGAA-PKKGDTVTVHYTGTLIDGTVFDSSYD----RGQPAEFPLG--GVIPGWDEGLQGM 164 (205)
T ss_pred ccCCceECCCCcEEEEEeccCCCC-CCCCCEEEEEEEEecCCCCccccccc----cCCCceeecC--CeeehHHHHHhhC
Confidence 456778899999999999999997 99999999999999999999999999 9999999996 9999999999999
Q ss_pred CCCcEEEEEEecccccCCCCCCCCCCCCCCCcceEEEEEEEEeee
Q 013896 100 LKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA 144 (434)
Q Consensus 100 ~~Ge~~~i~ip~~~ayG~~g~~~~~~~~ip~~~~lv~~i~l~~i~ 144 (434)
++|++|+++|||++|||.+|.+ ..||||++|+|+|+|+++.
T Consensus 165 ~vG~k~~l~IP~~laYG~~g~~----g~Ippns~LvFeVeLl~v~ 205 (205)
T COG0545 165 KVGGKRKLTIPPELAYGERGVP----GVIPPNSTLVFEVELLDVK 205 (205)
T ss_pred CCCceEEEEeCchhccCcCCCC----CCCCCCCeEEEEEEEEecC
Confidence 9999999999999999999965 4599999999999999873
No 7
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.9e-27 Score=180.73 Aligned_cols=107 Identities=30% Similarity=0.602 Sum_probs=102.6
Q ss_pred ceEEEEEecCCCCCCCCCCCEEEEEEEEEECCCcEEEeeccCCCCCCccEEEEcCCCcccccHHHhhcCCCCCcEEEEEE
Q 013896 30 SLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKM 109 (434)
Q Consensus 30 gl~~~i~~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~p~~~~lG~~~~i~g~~~al~~m~~Ge~~~i~i 109 (434)
|+.+.++.+|+|..+|++||+|++||++.+.||+.||||++ ++.|+.|.+|.+++|.||++++..|.+||++++.|
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~d----r~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti 77 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRD----RGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTI 77 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccc----cCCCeeEEecCcceeechhhcchhccccccceeee
Confidence 68899999999988899999999999999999999999999 89999999999999999999999999999999999
Q ss_pred ecccccCCCCCCCCCCCCCCCcceEEEEEEEEeee
Q 013896 110 KPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA 144 (434)
Q Consensus 110 p~~~ayG~~g~~~~~~~~ip~~~~lv~~i~l~~i~ 144 (434)
+|++|||..|.+ ..||||++|+|+|||+++.
T Consensus 78 ~pd~aYG~~G~p----~~IppNatL~FdVEll~v~ 108 (108)
T KOG0544|consen 78 SPDYAYGPRGHP----GGIPPNATLVFDVELLKVN 108 (108)
T ss_pred ccccccCCCCCC----CccCCCcEEEEEEEEEecC
Confidence 999999999954 6899999999999999873
No 8
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=6.2e-25 Score=193.45 Aligned_cols=106 Identities=32% Similarity=0.533 Sum_probs=100.1
Q ss_pred CCcceEEEEEeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCcEEEEeCCCCcchHHHHHHhcCCccc
Q 013896 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGE 344 (434)
Q Consensus 265 ~d~~~~k~il~~G~g~~~~~~P~~g~~V~v~y~~~~~~~~g~~~~ds~~~~~~~p~~~~lG~~~~~~gle~~l~~M~~Ge 344 (434)
..+++.+++++.|+|.. |..+++|+|||+|+|.| |++| ||+++ +++|+.|.|| ++|+||+++|.+|++|+
T Consensus 99 ~~sgl~y~~~~~G~G~~----~~~~~~V~vhY~G~l~~--G~vF-DsS~~-rg~p~~f~l~--~vI~Gw~egl~~M~vG~ 168 (205)
T COG0545 99 LPSGLQYKVLKAGDGAA----PKKGDTVTVHYTGTLID--GTVF-DSSYD-RGQPAEFPLG--GVIPGWDEGLQGMKVGG 168 (205)
T ss_pred CCCCcEEEEEeccCCCC----CCCCCEEEEEEEEecCC--CCcc-ccccc-cCCCceeecC--CeeehHHHHHhhCCCCc
Confidence 46899999999999976 58899999999999998 9999 88887 6999999999 79999999999999999
Q ss_pred EEEEEecCCcccccCCCCCCCCCCceEEEEEEEeee
Q 013896 345 IALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 380 (434)
Q Consensus 345 ~~~v~v~~~~ayg~~g~~~~ip~~~~l~f~ieLl~v 380 (434)
+++++|||++|||+++.++.||||++|+|+|+|+++
T Consensus 169 k~~l~IP~~laYG~~g~~g~Ippns~LvFeVeLl~v 204 (205)
T COG0545 169 KRKLTIPPELAYGERGVPGVIPPNSTLVFEVELLDV 204 (205)
T ss_pred eEEEEeCchhccCcCCCCCCCCCCCeEEEEEEEEec
Confidence 999999999999999988789999999999999987
No 9
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.91 E-value=1.1e-23 Score=191.88 Aligned_cols=114 Identities=24% Similarity=0.443 Sum_probs=106.5
Q ss_pred cccCeeecCCceEEEEEecCCCCCCCCCCCEEEEEEEEEECCCcEEEeeccCCCCCCccEEEEcCCCcccccHHHhhcCC
Q 013896 20 DKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTM 99 (434)
Q Consensus 20 ~~~~~~~~~~gl~~~i~~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~p~~~~lG~~~~i~g~~~al~~m 99 (434)
.+++.+.+++|++|+++++|+|.. |+.+|.|.+||++++.||++|++|+. ++.|+.|.+| ++++||+++|.+|
T Consensus 93 k~~gv~~t~sGl~y~vi~~G~G~~-p~~~d~V~v~Y~g~l~dG~vfdss~~----~g~P~~f~l~--~vipG~~eaL~~M 165 (206)
T PRK11570 93 KKEGVNSTESGLQFRVLTQGEGAI-PARTDRVRVHYTGKLIDGTVFDSSVA----RGEPAEFPVN--GVIPGWIEALTLM 165 (206)
T ss_pred hcCCcEECCCCcEEEEEeCCCCCC-CCCCCEEEEEEEEEECCCCEEEeccC----CCCCeEEEee--chhhHHHHHHcCC
Confidence 466788999999999999999996 99999999999999999999999998 7889999994 7999999999999
Q ss_pred CCCcEEEEEEecccccCCCCCCCCCCCCCCCcceEEEEEEEEeee
Q 013896 100 LKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA 144 (434)
Q Consensus 100 ~~Ge~~~i~ip~~~ayG~~g~~~~~~~~ip~~~~lv~~i~l~~i~ 144 (434)
++|++++|+|||++|||+.|.+ +.|||+++|+|+|+|++|.
T Consensus 166 ~~G~k~~~~IP~~lAYG~~g~~----~~Ipp~s~Lif~veLl~i~ 206 (206)
T PRK11570 166 PVGSKWELTIPHELAYGERGAG----ASIPPFSTLVFEVELLEIL 206 (206)
T ss_pred CCCCEEEEEECHHHcCCCCCCC----CCcCCCCeEEEEEEEEEEC
Confidence 9999999999999999999864 6899999999999999973
No 10
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.4e-23 Score=189.57 Aligned_cols=120 Identities=24% Similarity=0.485 Sum_probs=110.0
Q ss_pred CCCChhcccCeeecCCceEEEEEecCCCCCCCCCCCEEEEEEEEEEC-CCcEEEeeccCCCCCCccEE-EEcCCCccccc
Q 013896 14 KAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTL-DGVIVESTRSEYGGKGIPIR-HVLGKSKILLG 91 (434)
Q Consensus 14 ~~~~~~~~~~~~~~~~gl~~~i~~~G~g~~~~~~gd~V~v~y~~~~~-dg~~~~st~~~~~~~~~p~~-~~lG~~~~i~g 91 (434)
....|++.+...++++||.|+.++.|+|+. +..|+.|.+||.+++. +|.+|++++. +.|+. |.+|.+++|+|
T Consensus 105 ~~~~ek~~~~~~tl~~Gl~y~D~~vG~G~~-a~~G~rV~v~Y~Gkl~~~GkvFd~~~~-----~kp~~~f~lg~g~VIkG 178 (226)
T KOG0552|consen 105 SKEVEKQKPKSRTLPGGLRYEDLRVGSGPS-AKKGKRVSVRYIGKLKGNGKVFDSNFG-----GKPFKLFRLGSGEVIKG 178 (226)
T ss_pred cccccccCccceecCCCcEEEEEEecCCCC-CCCCCEEEEEEEEEecCCCeEeecccC-----CCCccccccCCCCCCch
Confidence 334566666667899999999999999997 9999999999999998 8999999986 67888 99999999999
Q ss_pred HHHhhcCCCCCcEEEEEEecccccCCCCCCCCCCCCCCCcceEEEEEEEEeee
Q 013896 92 LLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA 144 (434)
Q Consensus 92 ~~~al~~m~~Ge~~~i~ip~~~ayG~~g~~~~~~~~ip~~~~lv~~i~l~~i~ 144 (434)
|+.+|.+|++|.+++|+|||++|||.++.+ .||||++|+|+|+|+.+.
T Consensus 179 ~d~gv~GMkvGGkRrviIPp~lgYg~~g~~-----~IppnstL~fdVEL~~v~ 226 (226)
T KOG0552|consen 179 WDVGVEGMKVGGKRRVIIPPELGYGKKGVP-----EIPPNSTLVFDVELLSVK 226 (226)
T ss_pred HHHhhhhhccCCeeEEEeCccccccccCcC-----cCCCCCcEEEEEEEEecC
Confidence 999999999999999999999999999975 899999999999999873
No 11
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.88 E-value=3e-22 Score=178.11 Aligned_cols=111 Identities=19% Similarity=0.326 Sum_probs=101.6
Q ss_pred eeecCCceEEEEEec--CCCCCCCCCCCEEEEEEEEEECCCcEEEeeccCCCCCCccEEEEcCCCcccccHHHhhcCCCC
Q 013896 24 MKIVPGSLMKAVMRP--GGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK 101 (434)
Q Consensus 24 ~~~~~~gl~~~i~~~--G~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~p~~~~lG~~~~i~g~~~al~~m~~ 101 (434)
...+++|++|.+++. |+|.. |+.||.|++||++++.||++|++++. ..|+.|.+|.+++++||+++|.+|++
T Consensus 64 ~~~t~sGl~Y~v~~~~~g~g~~-p~~gd~V~v~Y~~~~~dG~v~~ss~~-----~~P~~f~vg~~~vi~Gl~e~L~~Mk~ 137 (177)
T TIGR03516 64 YETSQNGFWYYYNQKDTGEGTT-PEFGDLVTFEYDIRALDGDVIYSEEE-----LGPQTYKVDQQDLFSGLRDGLKLMKE 137 (177)
T ss_pred ceECCCccEEEEEEecCCCCCc-CCCCCEEEEEEEEEeCCCCEEEeCCC-----CCCEEEEeCCcchhHHHHHHHcCCCC
Confidence 467899999999976 56664 99999999999999999999999985 35999999999999999999999999
Q ss_pred CcEEEEEEecccccCCCCCCCCCCCCCCCcceEEEEEEEEeee
Q 013896 102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA 144 (434)
Q Consensus 102 Ge~~~i~ip~~~ayG~~g~~~~~~~~ip~~~~lv~~i~l~~i~ 144 (434)
||+++|+|||++|||..|.+ +.||||++|+|+|+|++|+
T Consensus 138 Ge~~~~~iP~~~AYG~~g~~----~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 138 GETATFLFPSHKAYGYYGDQ----NKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred CCEEEEEECHHHcCCCCCCC----CCcCcCCcEEEEEEEEEec
Confidence 99999999999999999854 5799999999999999985
No 12
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.86 E-value=3.2e-21 Score=182.03 Aligned_cols=116 Identities=25% Similarity=0.520 Sum_probs=106.7
Q ss_pred cccCeeecCCceEEEEEecCCCCCCCCCCCEEEEEEEEEECCCcEEEeeccCCCCCCccEEEEcCCCcccccHHHhhcCC
Q 013896 20 DKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTM 99 (434)
Q Consensus 20 ~~~~~~~~~~gl~~~i~~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~p~~~~lG~~~~i~g~~~al~~m 99 (434)
.+++.+.+++||+|+++++|+|.. |+.||.|.|||++++.||++|++++. ++.|+.|.+ +++++||+++|.+|
T Consensus 137 k~~gv~~t~sGl~y~Vi~~G~G~~-p~~gD~V~V~Y~g~l~dG~vfdss~~----~g~p~~f~l--~~vipG~~EaL~~M 209 (269)
T PRK10902 137 KEKGVKTTSTGLLYKVEKEGTGEA-PKDSDTVVVNYKGTLIDGKEFDNSYT----RGEPLSFRL--DGVIPGWTEGLKNI 209 (269)
T ss_pred cCCCcEECCCccEEEEEeCCCCCC-CCCCCEEEEEEEEEeCCCCEeecccc----CCCceEEec--CCcchHHHHHHhcC
Confidence 456788899999999999999996 99999999999999999999999987 778999998 57999999999999
Q ss_pred CCCcEEEEEEecccccCCCCCCCCCCCCCCCcceEEEEEEEEeeeecc
Q 013896 100 LKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAK 147 (434)
Q Consensus 100 ~~Ge~~~i~ip~~~ayG~~g~~~~~~~~ip~~~~lv~~i~l~~i~~~~ 147 (434)
++|++++|+||++++||..+.+ .|||+++|+|+|+|++|....
T Consensus 210 k~Gek~~l~IP~~laYG~~g~~-----gIppns~LvfeVeLl~V~~~~ 252 (269)
T PRK10902 210 KKGGKIKLVIPPELAYGKAGVP-----GIPANSTLVFDVELLDVKPAP 252 (269)
T ss_pred CCCcEEEEEECchhhCCCCCCC-----CCCCCCcEEEEEEEEEeccCc
Confidence 9999999999999999998853 699999999999999997543
No 13
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.84 E-value=3.1e-20 Score=169.27 Aligned_cols=106 Identities=31% Similarity=0.484 Sum_probs=97.7
Q ss_pred CCcceEEEEEeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCcEEEEeCCCCcchHHHHHHhcCCccc
Q 013896 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGE 344 (434)
Q Consensus 265 ~d~~~~k~il~~G~g~~~~~~P~~g~~V~v~y~~~~~~~~g~~~~ds~~~~~~~p~~~~lG~~~~~~gle~~l~~M~~Ge 344 (434)
.++++.++++++|+|.. |..++.|+|||++++.| |++| |+++. +++|+.|.+| .+++||+++|.+|++|+
T Consensus 100 t~sGl~y~vi~~G~G~~----p~~~d~V~v~Y~g~l~d--G~vf-dss~~-~g~P~~f~l~--~vipG~~eaL~~M~~G~ 169 (206)
T PRK11570 100 TESGLQFRVLTQGEGAI----PARTDRVRVHYTGKLID--GTVF-DSSVA-RGEPAEFPVN--GVIPGWIEALTLMPVGS 169 (206)
T ss_pred CCCCcEEEEEeCCCCCC----CCCCCEEEEEEEEEECC--CCEE-EeccC-CCCCeEEEee--chhhHHHHHHcCCCCCC
Confidence 45789999999999974 68999999999999987 9999 66666 5889999997 59999999999999999
Q ss_pred EEEEEecCCcccccCCCCCCCCCCceEEEEEEEeee
Q 013896 345 IALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 380 (434)
Q Consensus 345 ~~~v~v~~~~ayg~~g~~~~ip~~~~l~f~ieLl~v 380 (434)
++.|+|||++|||+.+.++.|||+++|+|+|||++|
T Consensus 170 k~~~~IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 170 KWELTIPHELAYGERGAGASIPPFSTLVFEVELLEI 205 (206)
T ss_pred EEEEEECHHHcCCCCCCCCCcCCCCeEEEEEEEEEE
Confidence 999999999999999988899999999999999997
No 14
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=5.5e-20 Score=166.33 Aligned_cols=108 Identities=31% Similarity=0.512 Sum_probs=99.8
Q ss_pred CCcceEEEEEeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCcEE-EEeCCCCcchHHHHHHhcCCcc
Q 013896 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE-FSSGEGLVPEGFEMCVRLMLPG 343 (434)
Q Consensus 265 ~d~~~~k~il~~G~g~~~~~~P~~g~~V~v~y~~~~~~~~g~~~~ds~~~~~~~p~~-~~lG~~~~~~gle~~l~~M~~G 343 (434)
-.+||+++-++-|+|.. |..|+.|.+||.|++.+ +|++| |+++. +.|+. |.+|.+.+|+||+.+|.+|++|
T Consensus 118 l~~Gl~y~D~~vG~G~~----a~~G~rV~v~Y~Gkl~~-~GkvF-d~~~~--~kp~~~f~lg~g~VIkG~d~gv~GMkvG 189 (226)
T KOG0552|consen 118 LPGGLRYEDLRVGSGPS----AKKGKRVSVRYIGKLKG-NGKVF-DSNFG--GKPFKLFRLGSGEVIKGWDVGVEGMKVG 189 (226)
T ss_pred cCCCcEEEEEEecCCCC----CCCCCEEEEEEEEEecC-CCeEe-ecccC--CCCccccccCCCCCCchHHHhhhhhccC
Confidence 45899999999999975 58999999999999995 59999 66664 88999 9999999999999999999999
Q ss_pred cEEEEEecCCcccccCCCCCCCCCCceEEEEEEEeeee
Q 013896 344 EIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381 (434)
Q Consensus 344 e~~~v~v~~~~ayg~~g~~~~ip~~~~l~f~ieLl~v~ 381 (434)
.+++|+|||++|||.++.+ .||||++|+|+|||+.+.
T Consensus 190 GkRrviIPp~lgYg~~g~~-~IppnstL~fdVEL~~v~ 226 (226)
T KOG0552|consen 190 GKRRVIIPPELGYGKKGVP-EIPPNSTLVFDVELLSVK 226 (226)
T ss_pred CeeEEEeCccccccccCcC-cCCCCCcEEEEEEEEecC
Confidence 9999999999999999997 899999999999999873
No 15
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.82 E-value=1.2e-19 Score=145.74 Aligned_cols=94 Identities=36% Similarity=0.639 Sum_probs=86.9
Q ss_pred CCCCCCCCCEEEEEEEEEECCCcEEEeeccCCCCCCccEEEEcCCCcccccHHHhhcCCCCCcEEEEEEecccccCCCCC
Q 013896 41 GDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDC 120 (434)
Q Consensus 41 g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~p~~~~lG~~~~i~g~~~al~~m~~Ge~~~i~ip~~~ayG~~g~ 120 (434)
|+.+|+.||.|.+||++++.+|+.|++++. .+.|+.|.+|.+++++||++||.+|++||+++|+||++++||+.+.
T Consensus 1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~----~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~ 76 (94)
T PF00254_consen 1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQ----EGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGL 76 (94)
T ss_dssp SSSSBSTTSEEEEEEEEEETTSEEEEETTT----TTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTB
T ss_pred CCccCCCCCEEEEEEEEEECCCcEEEEeee----cCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCcccc
Confidence 455699999999999999999999999987 6789999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCcceEEEEEEEE
Q 013896 121 PVAAPSTFPKDEELHFEIEMI 141 (434)
Q Consensus 121 ~~~~~~~ip~~~~lv~~i~l~ 141 (434)
. +..||++++|+|+|+|+
T Consensus 77 ~---~~~ip~~~~l~f~Iell 94 (94)
T PF00254_consen 77 E---PPKIPPNSTLVFEIELL 94 (94)
T ss_dssp C---TTTBTTTSEEEEEEEEE
T ss_pred C---CCCcCCCCeEEEEEEEC
Confidence 4 24699999999999996
No 16
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.82 E-value=1.4e-19 Score=161.03 Aligned_cols=110 Identities=18% Similarity=0.215 Sum_probs=96.4
Q ss_pred CCcceEEEEEeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCcEEEEeCCCCcchHHHHHHhcCCccc
Q 013896 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGE 344 (434)
Q Consensus 265 ~d~~~~k~il~~G~g~~~~~~P~~g~~V~v~y~~~~~~~~g~~~~ds~~~~~~~p~~~~lG~~~~~~gle~~l~~M~~Ge 344 (434)
...|+.+.++.++.|.. ..|..||.|++||++++.+ |++| ++++. ..|+.|.+|.+++++||+++|.+|++||
T Consensus 67 t~sGl~Y~v~~~~~g~g--~~p~~gd~V~v~Y~~~~~d--G~v~-~ss~~--~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge 139 (177)
T TIGR03516 67 SQNGFWYYYNQKDTGEG--TTPEFGDLVTFEYDIRALD--GDVI-YSEEE--LGPQTYKVDQQDLFSGLRDGLKLMKEGE 139 (177)
T ss_pred CCCccEEEEEEecCCCC--CcCCCCCEEEEEEEEEeCC--CCEE-EeCCC--CCCEEEEeCCcchhHHHHHHHcCCCCCC
Confidence 45788888887644432 2368999999999999988 9999 55554 5699999999999999999999999999
Q ss_pred EEEEEecCCcccccCCCCCCCCCCceEEEEEEEeeee
Q 013896 345 IALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381 (434)
Q Consensus 345 ~~~v~v~~~~ayg~~g~~~~ip~~~~l~f~ieLl~v~ 381 (434)
++.|.+||++|||..+.+..||||++|+|+|+|++|.
T Consensus 140 ~~~~~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 140 TATFLFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred EEEEEECHHHcCCCCCCCCCcCcCCcEEEEEEEEEec
Confidence 9999999999999999888899999999999999985
No 17
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=7.6e-21 Score=171.16 Aligned_cols=164 Identities=27% Similarity=0.400 Sum_probs=137.1
Q ss_pred CCcceEEEEEeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCcEEEEeCCCCcchHHHHHHhcCCccc
Q 013896 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGE 344 (434)
Q Consensus 265 ~d~~~~k~il~~G~g~~~~~~P~~g~~V~v~y~~~~~~~~g~~~~ds~~~~~~~p~~~~lG~~~~~~gle~~l~~M~~Ge 344 (434)
.-.++.|+||..|+|..+..+ +|..|++||.....++.++++|||+. .++|+++++|...-+|.||.+|.+|+++|
T Consensus 8 ~~~gv~Kril~~G~g~l~e~~--dGTrv~FHfrtl~~~e~~tviDDsRk--~gkPmeiiiGkkFkL~VwE~il~tM~v~E 83 (329)
T KOG0545|consen 8 NVEGVKKRILHGGTGELPEFI--DGTRVIFHFRTLKCDEERTVIDDSRK--VGKPMEIIIGKKFKLEVWEIILTTMRVHE 83 (329)
T ss_pred cchhhhHhhccCCCccCcccc--CCceEEEEEEecccCcccccccchhh--cCCCeEEeeccccccHHHHHHHHHHhhhh
Confidence 346899999999999877665 59999999999998877889988886 49999999999999999999999999999
Q ss_pred EEEEEecCC----ccc----------ccCCCC-----------------------CCCCCCceEEEEEEEeeeecCC---
Q 013896 345 IALVTCPPD----YAY----------DKFLRP-----------------------ANVPEGAHIQWEIELLGFEKPK--- 384 (434)
Q Consensus 345 ~~~v~v~~~----~ay----------g~~g~~-----------------------~~ip~~~~l~f~ieLl~v~~~~--- 384 (434)
.++|+|.-. |-| |..... .....-++|+|.|||++|..|.
T Consensus 84 vaqF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq 163 (329)
T KOG0545|consen 84 VAQFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQ 163 (329)
T ss_pred HHHhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhc
Confidence 999987742 222 111100 0011126799999999999875
Q ss_pred -CCCCCChhhhHHHHHHHHHHHhHHHhcCcHHHHHHHHHHHHHHHhhhh
Q 013896 385 -DWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVIFSVLKIA 432 (434)
Q Consensus 385 -~~~~~~~~e~~~~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~l~~~~ 432 (434)
+.|.||.+|++.++..++++||.+|+.|.|++|+.+|+.|+.+|+.-.
T Consensus 164 ~e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~ 212 (329)
T KOG0545|consen 164 RETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQ 212 (329)
T ss_pred cccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999999999999999999999999999998643
No 18
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.78 E-value=1.6e-18 Score=139.17 Aligned_cols=91 Identities=35% Similarity=0.598 Sum_probs=82.6
Q ss_pred CCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCcEEEEeCCCCcchHHHHHHhcCCcccEEEEEecCCcccccCCC-C
Q 013896 284 DCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLR-P 362 (434)
Q Consensus 284 ~~P~~g~~V~v~y~~~~~~~~g~~~~ds~~~~~~~p~~~~lG~~~~~~gle~~l~~M~~Ge~~~v~v~~~~ayg~~g~-~ 362 (434)
.+|..||.|+|||++++.+ |++| ++++. .++|++|.+|.+.+++||+.+|.+|++||+++|.|||+++||+.+. .
T Consensus 3 ~~~~~gd~V~i~y~~~~~~--g~~~-~~~~~-~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~ 78 (94)
T PF00254_consen 3 RTPKEGDTVTIHYTGRLED--GKVF-DSSYQ-EGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEP 78 (94)
T ss_dssp SSBSTTSEEEEEEEEEETT--SEEE-EETTT-TTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCT
T ss_pred ccCCCCCEEEEEEEEEECC--CcEE-EEeee-cCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCC
Confidence 4478999999999999986 9999 55544 4789999999999999999999999999999999999999999988 4
Q ss_pred CCCCCCceEEEEEEEe
Q 013896 363 ANVPEGAHIQWEIELL 378 (434)
Q Consensus 363 ~~ip~~~~l~f~ieLl 378 (434)
..||++++|+|+|+|+
T Consensus 79 ~~ip~~~~l~f~Iell 94 (94)
T PF00254_consen 79 PKIPPNSTLVFEIELL 94 (94)
T ss_dssp TTBTTTSEEEEEEEEE
T ss_pred CCcCCCCeEEEEEEEC
Confidence 4799999999999996
No 19
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.76 E-value=7.7e-18 Score=159.09 Aligned_cols=109 Identities=28% Similarity=0.502 Sum_probs=98.4
Q ss_pred CCcceEEEEEeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCcEEEEeCCCCcchHHHHHHhcCCccc
Q 013896 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGE 344 (434)
Q Consensus 265 ~d~~~~k~il~~G~g~~~~~~P~~g~~V~v~y~~~~~~~~g~~~~ds~~~~~~~p~~~~lG~~~~~~gle~~l~~M~~Ge 344 (434)
.++|+.++|+++|+|.. |..||.|+|||++++.| |++| ++++. ++.|+.|.++ .++|||+.+|.+|++|+
T Consensus 144 t~sGl~y~Vi~~G~G~~----p~~gD~V~V~Y~g~l~d--G~vf-dss~~-~g~p~~f~l~--~vipG~~EaL~~Mk~Ge 213 (269)
T PRK10902 144 TSTGLLYKVEKEGTGEA----PKDSDTVVVNYKGTLID--GKEF-DNSYT-RGEPLSFRLD--GVIPGWTEGLKNIKKGG 213 (269)
T ss_pred CCCccEEEEEeCCCCCC----CCCCCEEEEEEEEEeCC--CCEe-ecccc-CCCceEEecC--CcchHHHHHHhcCCCCc
Confidence 46789999999999964 68999999999999977 9999 66665 4789999986 49999999999999999
Q ss_pred EEEEEecCCcccccCCCCCCCCCCceEEEEEEEeeeecCC
Q 013896 345 IALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPK 384 (434)
Q Consensus 345 ~~~v~v~~~~ayg~~g~~~~ip~~~~l~f~ieLl~v~~~~ 384 (434)
++.|+||++++||..+.+ .|||+++|+|+|+|++|.+.+
T Consensus 214 k~~l~IP~~laYG~~g~~-gIppns~LvfeVeLl~V~~~~ 252 (269)
T PRK10902 214 KIKLVIPPELAYGKAGVP-GIPANSTLVFDVELLDVKPAP 252 (269)
T ss_pred EEEEEECchhhCCCCCCC-CCCCCCcEEEEEEEEEeccCc
Confidence 999999999999999875 799999999999999998644
No 20
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.56 E-value=3.8e-14 Score=123.82 Aligned_cols=84 Identities=26% Similarity=0.398 Sum_probs=74.3
Q ss_pred CCCCCCEEEEEEEEEECCCcEEEeeccCCCCCCccEEEEcCCCcccccHHHhhcCCCCCcEEEEEEecccccCCCCCCCC
Q 013896 44 TPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVA 123 (434)
Q Consensus 44 ~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~p~~~~lG~~~~i~g~~~al~~m~~Ge~~~i~ip~~~ayG~~g~~~~ 123 (434)
.++.||.|.+||++++.||++|++|+. .+.|+.|.+|.+++++||++||.+|++|++++|.|||++|||...
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~----~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d---- 75 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRN----NGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS---- 75 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCC----CCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC----
Confidence 378999999999999999999999986 678999999999999999999999999999999999999999764
Q ss_pred CCCCCCCcceEEEEEEEEee
Q 013896 124 APSTFPKDEELHFEIEMIDF 143 (434)
Q Consensus 124 ~~~~ip~~~~lv~~i~l~~i 143 (434)
..++..+....+
T Consensus 76 --------~~~v~~vp~~~f 87 (156)
T PRK15095 76 --------PDLIQYFSRRDF 87 (156)
T ss_pred --------hHHEEEecHHHC
Confidence 445555555554
No 21
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.55 E-value=2.4e-14 Score=125.13 Aligned_cols=70 Identities=21% Similarity=0.326 Sum_probs=63.7
Q ss_pred CCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCcEEEEeCCCCcchHHHHHHhcCCcccEEEEEecCCcccccC
Q 013896 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKF 359 (434)
Q Consensus 286 P~~g~~V~v~y~~~~~~~~g~~~~ds~~~~~~~p~~~~lG~~~~~~gle~~l~~M~~Ge~~~v~v~~~~ayg~~ 359 (434)
...++.|++||++++.| |++| ||++. +++|+.|.+|.+++++||+.+|.+|++|+++.|.|||++|||+.
T Consensus 5 i~~~~~V~v~Y~~~~~d--G~v~-dst~~-~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~ 74 (156)
T PRK15095 5 VQSNSAVLVHFTLKLDD--GSTA-ESTRN-NGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVP 74 (156)
T ss_pred cCCCCEEEEEEEEEeCC--CCEE-EECCC-CCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCC
Confidence 36899999999999977 9998 66654 37999999999999999999999999999999999999999964
No 22
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=5.4e-13 Score=116.11 Aligned_cols=86 Identities=26% Similarity=0.416 Sum_probs=75.1
Q ss_pred CCCCCCEEEEEEEEEECCCcEEEeeccCCCCCCccEEEEcCCCcccccHHHhhcCCCCCcEEEEEEecccccCCCCCCCC
Q 013896 44 TPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVA 123 (434)
Q Consensus 44 ~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~p~~~~lG~~~~i~g~~~al~~m~~Ge~~~i~ip~~~ayG~~g~~~~ 123 (434)
++++||.|+++|++++.||++|++|.. ...|+.|.+|.+++++||++||.+|.+|++..+.|||+.|||.+.
T Consensus 2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e----~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~---- 73 (174)
T COG1047 2 KIEKGDVVSLHYTLKVEDGEVVDTTDE----NYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYD---- 73 (174)
T ss_pred cccCCCEEEEEEEEEecCCcEEEcccc----cCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCC----
Confidence 368999999999999999999999976 577999999999999999999999999999999999999999864
Q ss_pred CCCCCCCcceEEEEEEEEeeee
Q 013896 124 APSTFPKDEELHFEIEMIDFAK 145 (434)
Q Consensus 124 ~~~~ip~~~~lv~~i~l~~i~~ 145 (434)
..|+-.+.+-.+..
T Consensus 74 --------~~lvq~vp~~~F~~ 87 (174)
T COG1047 74 --------PDLVQRVPRDEFQG 87 (174)
T ss_pred --------hHHeEEecHHHhCc
Confidence 45555555555544
No 23
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.1e-12 Score=114.18 Aligned_cols=69 Identities=26% Similarity=0.396 Sum_probs=62.9
Q ss_pred CCCCeEEEEEEEEEecCCCcEEEeccCCCCCCcEEEEeCCCCcchHHHHHHhcCCcccEEEEEecCCcccccC
Q 013896 287 LHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKF 359 (434)
Q Consensus 287 ~~g~~V~v~y~~~~~~~~g~~~~ds~~~~~~~p~~~~lG~~~~~~gle~~l~~M~~Ge~~~v~v~~~~ayg~~ 359 (434)
..|+.|++||++++.| |++| ||+.. ..+|+.|.+|.+++++|||+||.+|.+|++..|.|||+.|||+.
T Consensus 4 ~k~~~V~i~Y~~~~~d--g~v~-Dtt~e-~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~ 72 (174)
T COG1047 4 EKGDVVSLHYTLKVED--GEVV-DTTDE-NYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEY 72 (174)
T ss_pred cCCCEEEEEEEEEecC--CcEE-Ecccc-cCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCC
Confidence 5799999999999988 9999 66643 26899999999999999999999999999999999999999964
No 24
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.42 E-value=1.4e-12 Score=117.16 Aligned_cols=83 Identities=23% Similarity=0.299 Sum_probs=72.9
Q ss_pred CCCCCCEEEEEEEEEECCCcEEEeeccCCCCCCccEEEEcCCCcccccHHHhhcCCCCCcEEEEEEecccccCCCCCCCC
Q 013896 44 TPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVA 123 (434)
Q Consensus 44 ~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~p~~~~lG~~~~i~g~~~al~~m~~Ge~~~i~ip~~~ayG~~g~~~~ 123 (434)
++++++.|+++|++++.||++|++|+. ..|+.|.+|.++++|+|++||.+|++|++.+|.|||+.|||.+.
T Consensus 2 kI~~~~vV~l~Y~l~~~dG~v~dst~~-----~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d---- 72 (196)
T PRK10737 2 KVAKDLVVSLAYQVRTEDGVLVDESPV-----SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD---- 72 (196)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEecCC-----CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCC----
Confidence 368899999999999999999999974 57999999999999999999999999999999999999999864
Q ss_pred CCCCCCCcceEEEEEEEEee
Q 013896 124 APSTFPKDEELHFEIEMIDF 143 (434)
Q Consensus 124 ~~~~ip~~~~lv~~i~l~~i 143 (434)
..++..+..-.|
T Consensus 73 --------~~lV~~vpr~~F 84 (196)
T PRK10737 73 --------ENLVQRVPKDVF 84 (196)
T ss_pred --------hHHEEEecHHHC
Confidence 455555555444
No 25
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.40 E-value=1e-12 Score=117.90 Aligned_cols=68 Identities=19% Similarity=0.296 Sum_probs=62.2
Q ss_pred CCCCeEEEEEEEEEecCCCcEEEeccCCCCCCcEEEEeCCCCcchHHHHHHhcCCcccEEEEEecCCcccccC
Q 013896 287 LHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKF 359 (434)
Q Consensus 287 ~~g~~V~v~y~~~~~~~~g~~~~ds~~~~~~~p~~~~lG~~~~~~gle~~l~~M~~Ge~~~v~v~~~~ayg~~ 359 (434)
..++.|+|+|++++.+ |++| +++.. .+|+.|.+|.++++|+||.+|.+|.+|++..|.|+|+.|||+.
T Consensus 4 ~~~~vV~l~Y~l~~~d--G~v~-dst~~--~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~ 71 (196)
T PRK10737 4 AKDLVVSLAYQVRTED--GVLV-DESPV--SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQY 71 (196)
T ss_pred CCCCEEEEEEEEEeCC--CCEE-EecCC--CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCC
Confidence 5789999999999977 9999 55553 6899999999999999999999999999999999999999964
No 26
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.73 E-value=3.3e-08 Score=100.63 Aligned_cols=98 Identities=19% Similarity=0.264 Sum_probs=82.4
Q ss_pred CCCCCEEEEEEEEEECCCcEEEeeccCCCCCCccEEEEcCCCcccccHHHhhcCCCCCcEEEEEEecccccCCCCCCCCC
Q 013896 45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA 124 (434)
Q Consensus 45 ~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~p~~~~lG~~~~i~g~~~al~~m~~Ge~~~i~ip~~~ayG~~g~~~~~ 124 (434)
++.||.|.++|+++. +|+.++++. ..++.|.+|.+++++||+++|.||++|+++.|.++....|+....
T Consensus 147 ~~~gD~V~v~~~~~~-dg~~~~~~~------~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~---- 215 (408)
T TIGR00115 147 AEKGDRVTIDFEGFI-DGEAFEGGK------AENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL---- 215 (408)
T ss_pred cCCCCEEEEEEEEEE-CCEECcCCC------CCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC----
Confidence 789999999999975 888888664 368999999999999999999999999999999998888987654
Q ss_pred CCCCCCcceEEEEEEEEeeeecccccccccEEEE
Q 013896 125 PSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKK 158 (434)
Q Consensus 125 ~~~ip~~~~lv~~i~l~~i~~~~~~~~d~g~~k~ 158 (434)
++.++.|.|+|.+|.....+.-|..+.+.
T Consensus 216 -----~gk~~~f~v~i~~I~~~~~peldDefak~ 244 (408)
T TIGR00115 216 -----AGKEATFKVTVKEVKEKELPELDDEFAKE 244 (408)
T ss_pred -----CCCeEEEEEEEEEeccCCCCCCCHHHHHh
Confidence 48999999999999876654444444443
No 27
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.63 E-value=4.3e-07 Score=92.46 Aligned_cols=87 Identities=14% Similarity=0.249 Sum_probs=74.5
Q ss_pred CCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCcEEEEeCCCCcchHHHHHHhcCCcccEEEEEecCCcccccCCCCCCC
Q 013896 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANV 365 (434)
Q Consensus 286 P~~g~~V~v~y~~~~~~~~g~~~~ds~~~~~~~p~~~~lG~~~~~~gle~~l~~M~~Ge~~~v~v~~~~ayg~~g~~~~i 365 (434)
+..||.|+|+|+++. + |+.| ++.. ..++.|.+|.+.+++||+.+|.+|++|+++.|.++....|+....
T Consensus 147 ~~~gD~V~v~~~~~~-d--g~~~-~~~~---~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~---- 215 (408)
T TIGR00115 147 AEKGDRVTIDFEGFI-D--GEAF-EGGK---AENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL---- 215 (408)
T ss_pred cCCCCEEEEEEEEEE-C--CEEC-cCCC---CCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC----
Confidence 478999999999976 4 8888 4432 578999999999999999999999999999999998778876554
Q ss_pred CCCceEEEEEEEeeeecCC
Q 013896 366 PEGAHIQWEIELLGFEKPK 384 (434)
Q Consensus 366 p~~~~l~f~ieLl~v~~~~ 384 (434)
+|.++.|.|+|.+|....
T Consensus 216 -~gk~~~f~v~i~~I~~~~ 233 (408)
T TIGR00115 216 -AGKEATFKVTVKEVKEKE 233 (408)
T ss_pred -CCCeEEEEEEEEEeccCC
Confidence 378999999999998743
No 28
>PRK01490 tig trigger factor; Provisional
Probab=98.61 E-value=1.1e-07 Score=97.48 Aligned_cols=97 Identities=20% Similarity=0.280 Sum_probs=80.8
Q ss_pred CCCCCEEEEEEEEEECCCcEEEeeccCCCCCCccEEEEcCCCcccccHHHhhcCCCCCcEEEEEEecccccCCCCCCCCC
Q 013896 45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA 124 (434)
Q Consensus 45 ~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~p~~~~lG~~~~i~g~~~al~~m~~Ge~~~i~ip~~~ayG~~g~~~~~ 124 (434)
++.||.|+++|.++. +|..|+++. ..++.|.+|.+++++||+++|.||++|+++.|.++....|+....
T Consensus 158 ~~~gD~V~vd~~~~~-~g~~~~~~~------~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l---- 226 (435)
T PRK01490 158 AENGDRVTIDFVGSI-DGEEFEGGK------AEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL---- 226 (435)
T ss_pred CCCCCEEEEEEEEEE-CCEECcCCC------CCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC----
Confidence 799999999999986 888887653 368999999999999999999999999999999998888876654
Q ss_pred CCCCCCcceEEEEEEEEeeeecccccccccEEE
Q 013896 125 PSTFPKDEELHFEIEMIDFAKAKIIADDFGVVK 157 (434)
Q Consensus 125 ~~~ip~~~~lv~~i~l~~i~~~~~~~~d~g~~k 157 (434)
++.++.|.|+|.+|.....+.-|..+.+
T Consensus 227 -----agk~~~f~v~v~~V~~~~~pel~Defak 254 (435)
T PRK01490 227 -----AGKEATFKVTVKEVKEKELPELDDEFAK 254 (435)
T ss_pred -----CCCeEEEEEEEEEeccCCCCCCCHHHHH
Confidence 3799999999999987654443333333
No 29
>PRK01490 tig trigger factor; Provisional
Probab=98.51 E-value=1.6e-06 Score=88.99 Aligned_cols=86 Identities=14% Similarity=0.220 Sum_probs=73.4
Q ss_pred CCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCcEEEEeCCCCcchHHHHHHhcCCcccEEEEEecCCcccccCCCCCCC
Q 013896 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANV 365 (434)
Q Consensus 286 P~~g~~V~v~y~~~~~~~~g~~~~ds~~~~~~~p~~~~lG~~~~~~gle~~l~~M~~Ge~~~v~v~~~~ayg~~g~~~~i 365 (434)
+..||.|+|+|+++. + |+.| ++.. .+++.|.+|.+.+++||+.+|.||++|+++.|.++....|+.....
T Consensus 158 ~~~gD~V~vd~~~~~-~--g~~~-~~~~---~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~la--- 227 (435)
T PRK01490 158 AENGDRVTIDFVGSI-D--GEEF-EGGK---AEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDLA--- 227 (435)
T ss_pred CCCCCEEEEEEEEEE-C--CEEC-cCCC---CCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccCC---
Confidence 478999999999997 4 7887 4332 5789999999999999999999999999999999877778665443
Q ss_pred CCCceEEEEEEEeeeecC
Q 013896 366 PEGAHIQWEIELLGFEKP 383 (434)
Q Consensus 366 p~~~~l~f~ieLl~v~~~ 383 (434)
|.++.|.|+|.+|...
T Consensus 228 --gk~~~f~v~v~~V~~~ 243 (435)
T PRK01490 228 --GKEATFKVTVKEVKEK 243 (435)
T ss_pred --CCeEEEEEEEEEeccC
Confidence 6789999999999864
No 30
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=3.4e-07 Score=92.91 Aligned_cols=98 Identities=21% Similarity=0.301 Sum_probs=79.7
Q ss_pred CCCCCEEEEEEEEEECCCcEEEeeccCCCCCCccEEEEcCCCcccccHHHhhcCCCCCcEEEEEEecccccCCCCCCCCC
Q 013896 45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA 124 (434)
Q Consensus 45 ~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~p~~~~lG~~~~i~g~~~al~~m~~Ge~~~i~ip~~~ayG~~g~~~~~ 124 (434)
++.||.|+|+|.++ .||..|... ....+.+.||++++||||+.+|.||++|+...|.+.....|......
T Consensus 158 a~~gD~v~IDf~g~-iDg~~fegg------~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~La--- 227 (441)
T COG0544 158 AENGDRVTIDFEGS-VDGEEFEGG------KAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEELA--- 227 (441)
T ss_pred cccCCEEEEEEEEE-EcCeeccCc------cccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHhC---
Confidence 68999999999996 588877755 34679999999999999999999999999999877766677665543
Q ss_pred CCCCCCcceEEEEEEEEeeeecccccccccEEEE
Q 013896 125 PSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKK 158 (434)
Q Consensus 125 ~~~ip~~~~lv~~i~l~~i~~~~~~~~d~g~~k~ 158 (434)
+++..|.|+|.+|.....+.-|..+.+.
T Consensus 228 ------GK~a~F~V~vkeVk~~elpEldDEfAk~ 255 (441)
T COG0544 228 ------GKEATFKVKVKEVKKRELPELDDEFAKK 255 (441)
T ss_pred ------CCceEEEEEEEEEeecCCCCCCHHHHHh
Confidence 7999999999999987765544444333
No 31
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=4.9e-06 Score=84.58 Aligned_cols=86 Identities=15% Similarity=0.242 Sum_probs=69.5
Q ss_pred CCCCeEEEEEEEEEecCCCcEEEeccCCCCCCcEEEEeCCCCcchHHHHHHhcCCcccEEEEEecCCcccccCCCCCCCC
Q 013896 287 LHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVP 366 (434)
Q Consensus 287 ~~g~~V~v~y~~~~~~~~g~~~~ds~~~~~~~p~~~~lG~~~~~~gle~~l~~M~~Ge~~~v~v~~~~ayg~~g~~~~ip 366 (434)
..||.|+|+|.|+. ||..| ... ..+.+.|.||.++++|||+.+|.||++|+...|.+.....|......
T Consensus 159 ~~gD~v~IDf~g~i---Dg~~f-egg---~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~La---- 227 (441)
T COG0544 159 ENGDRVTIDFEGSV---DGEEF-EGG---KAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEELA---- 227 (441)
T ss_pred ccCCEEEEEEEEEE---cCeec-cCc---cccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHhC----
Confidence 68999999999976 37787 333 25679999999999999999999999999998766644455554443
Q ss_pred CCceEEEEEEEeeeecCC
Q 013896 367 EGAHIQWEIELLGFEKPK 384 (434)
Q Consensus 367 ~~~~l~f~ieLl~v~~~~ 384 (434)
|.+.+|.|+|..|....
T Consensus 228 -GK~a~F~V~vkeVk~~e 244 (441)
T COG0544 228 -GKEATFKVKVKEVKKRE 244 (441)
T ss_pred -CCceEEEEEEEEEeecC
Confidence 56799999999998754
No 32
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=1.2e-05 Score=73.76 Aligned_cols=83 Identities=23% Similarity=0.306 Sum_probs=72.9
Q ss_pred eecCCceEEEEEecCCCCC-CCCCCCEEEEEEEEEECC--CcEEEeeccCCCCCCccEEEEcCCCcccccHHHhhcCCCC
Q 013896 25 KIVPGSLMKAVMRPGGGDS-TPSDGDQVAYHCTVRTLD--GVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK 101 (434)
Q Consensus 25 ~~~~~gl~~~i~~~G~g~~-~~~~gd~V~v~y~~~~~d--g~~~~st~~~~~~~~~p~~~~lG~~~~i~g~~~al~~m~~ 101 (434)
.+...|+.++++..|.|.- -...|..|.+||+....+ ++++|+|+. .++|+.+.+|...-++-|+..|..|++
T Consensus 6 ~l~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk----~gkPmeiiiGkkFkL~VwE~il~tM~v 81 (329)
T KOG0545|consen 6 LLNVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRK----VGKPMEIIIGKKFKLEVWEIILTTMRV 81 (329)
T ss_pred hccchhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhh----cCCCeEEeeccccccHHHHHHHHHHhh
Confidence 3456899999999999983 256899999999987765 578999998 889999999999999999999999999
Q ss_pred CcEEEEEEec
Q 013896 102 GEVSMFKMKP 111 (434)
Q Consensus 102 Ge~~~i~ip~ 111 (434)
+|.+.|++..
T Consensus 82 ~EvaqF~~d~ 91 (329)
T KOG0545|consen 82 HEVAQFWCDT 91 (329)
T ss_pred hhHHHhhhhh
Confidence 9999988764
No 33
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.82 E-value=0.00096 Score=64.18 Aligned_cols=37 Identities=32% Similarity=0.509 Sum_probs=33.4
Q ss_pred ChhhhHHHHHHHHHHHhHHHhcCcHHHHHHHHHHHHH
Q 013896 390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVIF 426 (434)
Q Consensus 390 ~~~e~~~~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~ 426 (434)
-.+++|..+..+|++||.+||+|+|.+|+.||.+++.
T Consensus 89 I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia 125 (536)
T KOG4648|consen 89 IAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIA 125 (536)
T ss_pred HHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhc
Confidence 3578899999999999999999999999999987764
No 34
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=0.0027 Score=63.78 Aligned_cols=41 Identities=20% Similarity=0.356 Sum_probs=38.6
Q ss_pred CCCChhhhHHHHHHHHHHHhHHHhcCcHHHHHHHHHHHHHH
Q 013896 387 TGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVIFS 427 (434)
Q Consensus 387 ~~~~~~e~~~~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~ 427 (434)
-.|+.++++..|..+|.+||.+|+.|+|..|+++|..|+.+
T Consensus 104 ~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l 144 (606)
T KOG0547|consen 104 KAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIEL 144 (606)
T ss_pred hccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhc
Confidence 36789999999999999999999999999999999999975
No 35
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.49 E-value=0.0038 Score=55.96 Aligned_cols=37 Identities=35% Similarity=0.689 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHHHHhHHHhcCcHHHHHHHHHHHHHHH
Q 013896 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVIFSV 428 (434)
Q Consensus 392 ~e~~~~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~l 428 (434)
+..++.|.++|.+||.+|+.|.|..|...|..||.+-
T Consensus 89 ~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~c 125 (271)
T KOG4234|consen 89 DKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESC 125 (271)
T ss_pred HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhC
Confidence 4458899999999999999999999999999998753
No 36
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=96.35 E-value=0.0052 Score=66.07 Aligned_cols=64 Identities=23% Similarity=0.295 Sum_probs=54.4
Q ss_pred CCCCCceEEEEEEEeeeecCCCCCCCChhhhHHHHHHHHHHHhHHHhcCcHHHHHHHHHHHHHHH
Q 013896 364 NVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVIFSV 428 (434)
Q Consensus 364 ~ip~~~~l~f~ieLl~v~~~~~~~~~~~~e~~~~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~l 428 (434)
..|+...+....++-++.. .+.|.|+.+++.+.|..+|..||.+|+.++|.+|++.|++|+.+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~ 157 (615)
T TIGR00990 94 TAPKNAPVEPADELPEIDE-SSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECK 157 (615)
T ss_pred CCCCCCCCCccccccccch-hhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4566677777777766654 556889999999999999999999999999999999999998754
No 37
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.45 E-value=0.021 Score=54.35 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=35.3
Q ss_pred ChhhhHHHHHHHHHHHhHHHhcCcHHHHHHHHHHHHHHH
Q 013896 390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVIFSV 428 (434)
Q Consensus 390 ~~~e~~~~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~l 428 (434)
+.+|-.+.|.++|.+||.+.+.++|.+|+.+|.+||.+.
T Consensus 73 ~~~e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~ 111 (304)
T KOG0553|consen 73 TPEEDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELD 111 (304)
T ss_pred ChHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 334678899999999999999999999999999999875
No 38
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.39 E-value=0.1 Score=32.25 Aligned_cols=30 Identities=23% Similarity=0.280 Sum_probs=25.5
Q ss_pred HHHHHHHhHHHhcCcHHHHHHHHHHHHHHH
Q 013896 399 EKIRVTGNRLFKEGKFELAKAKYEKVIFSV 428 (434)
Q Consensus 399 ~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~l 428 (434)
.-....|..+++.|+|.+|++.|++|+.+-
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 456778999999999999999999999863
No 39
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.13 E-value=0.13 Score=32.04 Aligned_cols=29 Identities=28% Similarity=0.380 Sum_probs=25.0
Q ss_pred HHHHHHHhHHHhcCcHHHHHHHHHHHHHH
Q 013896 399 EKIRVTGNRLFKEGKFELAKAKYEKVIFS 427 (434)
Q Consensus 399 ~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~ 427 (434)
.-.-..|..++..++|.+|+..|++|+++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 44567899999999999999999999986
No 40
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.39 E-value=0.16 Score=32.37 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=22.6
Q ss_pred HHHHHhHHHhcCcHHHHHHHHHHHHHH
Q 013896 401 IRVTGNRLFKEGKFELAKAKYEKVIFS 427 (434)
Q Consensus 401 ~k~~gn~~~k~~~y~~A~~~Y~~a~~~ 427 (434)
+..-|+.+.+.|+|.+|+..|++||.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356799999999999999999998843
No 41
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=92.16 E-value=0.12 Score=50.39 Aligned_cols=41 Identities=32% Similarity=0.512 Sum_probs=38.1
Q ss_pred ChhhhHHHHHHHHHHHhHHHhcCcHHHHHHHHHHHHHHHhh
Q 013896 390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVIFSVLK 430 (434)
Q Consensus 390 ~~~e~~~~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~l~~ 430 (434)
+....++.+..+|+.||.+||+++|.+|..+|.|+++|++.
T Consensus 214 ~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~ 254 (372)
T KOG0546|consen 214 DFDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSE 254 (372)
T ss_pred ccchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcc
Confidence 46778999999999999999999999999999999999984
No 42
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=92.12 E-value=0.17 Score=48.98 Aligned_cols=34 Identities=26% Similarity=0.411 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHhHHHhcCcHHHHHHHHHHHHHH
Q 013896 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVIFS 427 (434)
Q Consensus 394 ~~~~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~ 427 (434)
.-+.|...|++||++||.++|+.|..+|.++|+-
T Consensus 77 p~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~ 110 (390)
T KOG0551|consen 77 PHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK 110 (390)
T ss_pred hHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh
Confidence 3458999999999999999999999999998763
No 43
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=91.64 E-value=0.22 Score=36.45 Aligned_cols=32 Identities=31% Similarity=0.343 Sum_probs=27.8
Q ss_pred HHHHHHHHHhHHHhcCcHHHHHHHHHHHHHHH
Q 013896 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVIFSV 428 (434)
Q Consensus 397 ~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~l 428 (434)
.|......|+.++..++|.+|+..|++|+.+-
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~ 33 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD 33 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 36678889999999999999999999999863
No 44
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=88.64 E-value=0.53 Score=48.26 Aligned_cols=31 Identities=35% Similarity=0.527 Sum_probs=28.0
Q ss_pred HHHHHHHHHhHHHhcCcHHHHHHHHHHHHHH
Q 013896 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVIFS 427 (434)
Q Consensus 397 ~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~ 427 (434)
.+...|.+||++|+.++|..|++.|.+|+..
T Consensus 357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr 387 (539)
T KOG0548|consen 357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIKR 387 (539)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 3777899999999999999999999998864
No 45
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=88.46 E-value=0.41 Score=47.71 Aligned_cols=37 Identities=22% Similarity=0.280 Sum_probs=32.4
Q ss_pred hhhhHHHHHHHHHHHhHHHhcCcHHHHHHHHHHHHHH
Q 013896 391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVIFS 427 (434)
Q Consensus 391 ~~e~~~~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~ 427 (434)
...........|++||..||.|+|..|..+|..||.+
T Consensus 242 ~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i 278 (486)
T KOG0550|consen 242 ASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI 278 (486)
T ss_pred HhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC
Confidence 3445777889999999999999999999999999863
No 46
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.18 E-value=1.3 Score=27.17 Aligned_cols=29 Identities=24% Similarity=0.197 Sum_probs=25.5
Q ss_pred HHHHHHHhHHHhcCcHHHHHHHHHHHHHH
Q 013896 399 EKIRVTGNRLFKEGKFELAKAKYEKVIFS 427 (434)
Q Consensus 399 ~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~ 427 (434)
...-..|.-+.+.|++.+|++.|++|+.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34567889999999999999999999986
No 47
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.82 E-value=1.4 Score=28.21 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=26.8
Q ss_pred HHHHHHHHhHHHhcCcHHHHHHHHHHHHHHHhhh
Q 013896 398 AEKIRVTGNRLFKEGKFELAKAKYEKVIFSVLKI 431 (434)
Q Consensus 398 a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~l~~~ 431 (434)
+..+..-|+.++.+|+|.+|...|++|+.+.+.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 4556778999999999999999999999987654
No 48
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=85.58 E-value=2 Score=32.65 Aligned_cols=35 Identities=14% Similarity=0.146 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhHHHhcCcHHHHHHHHHHHHHHHhh
Q 013896 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVIFSVLK 430 (434)
Q Consensus 396 ~~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~l~~ 430 (434)
..|..+-.++.++=++|+|.+|+..|..|+.+|..
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 45677788889999999999999999999999865
No 49
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=85.42 E-value=2.5 Score=32.02 Aligned_cols=38 Identities=29% Similarity=0.289 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhHHHhcCcHHHHHHHHHHHHHHHhhhh
Q 013896 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVIFSVLKIA 432 (434)
Q Consensus 395 ~~~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~l~~~~ 432 (434)
.+.|.+.-.++.++=+.|+|..|+.+|++|+..|..+.
T Consensus 3 ~~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~ 40 (75)
T cd02682 3 EEMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIV 40 (75)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999999999999999999999997653
No 50
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=84.28 E-value=2.3 Score=32.39 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhHHHhcCcHHHHHHHHHHHHHHHhhh
Q 013896 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVIFSVLKI 431 (434)
Q Consensus 396 ~~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~l~~~ 431 (434)
..|..+-.++.++=+.|+|.+|+.+|..|+.+|...
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~ 39 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQV 39 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 356677778899999999999999999999998753
No 51
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=83.95 E-value=3.4 Score=30.49 Aligned_cols=37 Identities=19% Similarity=0.253 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhHHHhcCcHHHHHHHHHHHHHHHhhh
Q 013896 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVIFSVLKI 431 (434)
Q Consensus 395 ~~~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~l~~~ 431 (434)
++.|..+-.+|..+=+.|+|..|+..|..|+.+|...
T Consensus 2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 38 (69)
T PF04212_consen 2 LDKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQA 38 (69)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3566677778888888999999999999999998754
No 52
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=83.71 E-value=3.3 Score=30.86 Aligned_cols=34 Identities=18% Similarity=0.131 Sum_probs=28.9
Q ss_pred HHHHHHHHHhHHHhcCcHHHHHHHHHHHHHHHhh
Q 013896 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVIFSVLK 430 (434)
Q Consensus 397 ~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~l~~ 430 (434)
.+.-+...|..++..|+|.+|+..|++|+.+...
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 37 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQ 37 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4666788999999999999999999999998543
No 53
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=83.16 E-value=2.7 Score=31.85 Aligned_cols=37 Identities=22% Similarity=0.187 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhHHHhcCcHHHHHHHHHHHHHHHhhh
Q 013896 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVIFSVLKI 431 (434)
Q Consensus 395 ~~~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~l~~~ 431 (434)
+..|..+-.++.+.=+.++|..|..+|..|+.+|...
T Consensus 3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~ 39 (75)
T cd02677 3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKG 39 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4567777788889999999999999999999998653
No 54
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=82.68 E-value=3.3 Score=31.23 Aligned_cols=37 Identities=14% Similarity=0.175 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHhHHHhcCcHHHHHHHHHHHHHHHhh
Q 013896 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVIFSVLK 430 (434)
Q Consensus 394 ~~~~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~l~~ 430 (434)
.++.|..+-.+|.+.=+.|+|..|+..|..|+.+|..
T Consensus 2 ~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 2 FLQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMH 38 (75)
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3667888889999999999999999999999999865
No 55
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=82.57 E-value=3 Score=31.53 Aligned_cols=37 Identities=14% Similarity=0.121 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhHHHhcCcHHHHHHHHHHHHHHHhhh
Q 013896 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVIFSVLKI 431 (434)
Q Consensus 395 ~~~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~l~~~ 431 (434)
++.|..+-.+|...=+.|+|..|+..|..|+.+|...
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~ 39 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPA 39 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 5677788888899999999999999999999998753
No 56
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=80.19 E-value=1.8 Score=43.25 Aligned_cols=52 Identities=19% Similarity=0.133 Sum_probs=40.4
Q ss_pred EEEEEeeeecCCCCCCCChhhhHHHHHHHHHHHhHHHhcCcHHHHHHHHHHHHHHH
Q 013896 373 WEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVIFSV 428 (434)
Q Consensus 373 f~ieLl~v~~~~~~~~~~~~e~~~~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~l 428 (434)
++.+.....++- ...++-...|...|++||.++|+++|..|++.|..|+...
T Consensus 28 ~~~e~~~~~~~~----s~~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~ 79 (486)
T KOG0550|consen 28 TEKETAATSPEY----SFSQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMC 79 (486)
T ss_pred hhcchhccCccc----cccchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhC
Confidence 444444444332 2346678899999999999999999999999999999864
No 57
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=79.35 E-value=5.3 Score=29.72 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHhHHHhcCcHHHHHHHHHHHHHHHh
Q 013896 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVIFSVL 429 (434)
Q Consensus 394 ~~~~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~l~ 429 (434)
....+.-+-..|+-+...|+|..|+..|++|+++.+
T Consensus 42 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 42 HPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 345678899999999999999999999999999875
No 58
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=78.88 E-value=5.8 Score=29.74 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhHHHhcCcHHHHHHHHHHHHHHHhhh
Q 013896 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVIFSVLKI 431 (434)
Q Consensus 395 ~~~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~l~~~ 431 (434)
++.|..+-.+|...=+.|+|..|+..|..|+.+|...
T Consensus 3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~ 39 (75)
T cd02656 3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQA 39 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 4567777778888888999999999999999998753
No 59
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=76.70 E-value=7 Score=29.37 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhHHHhcCcHHHHHHHHHHHHHHHhhh
Q 013896 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVIFSVLKI 431 (434)
Q Consensus 395 ~~~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~l~~~ 431 (434)
+..|..+-.+|..+=+.|+|..|+..|..|+.+|...
T Consensus 5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~ 41 (77)
T smart00745 5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLLEG 41 (77)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 4566677777888888999999999999999998763
No 60
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=76.42 E-value=3.5 Score=23.47 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=23.5
Q ss_pred HHHHHhHHHhcCcHHHHHHHHHHHHHH
Q 013896 401 IRVTGNRLFKEGKFELAKAKYEKVIFS 427 (434)
Q Consensus 401 ~k~~gn~~~k~~~y~~A~~~Y~~a~~~ 427 (434)
....|..++..++|..|...|+++++.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 346788999999999999999999874
No 61
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=76.08 E-value=6.1 Score=29.91 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhHHHhcCcHHHHHHHHHHHHHHHhh
Q 013896 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVIFSVLK 430 (434)
Q Consensus 395 ~~~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~l~~ 430 (434)
++.|..+-.+|+..=..|+|.+|++.|..|+.++..
T Consensus 3 l~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 3 LERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 346667777888888999999999999999999864
No 62
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=74.25 E-value=3.8 Score=29.33 Aligned_cols=23 Identities=22% Similarity=0.514 Sum_probs=14.9
Q ss_pred HHhHHHhcCcHHHHHHHHHHHHH
Q 013896 404 TGNRLFKEGKFELAKAKYEKVIF 426 (434)
Q Consensus 404 ~gn~~~k~~~y~~A~~~Y~~a~~ 426 (434)
.|+.+++.|+|..|++.|+++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~ 25 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALK 25 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 46666666666666666666654
No 63
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=73.81 E-value=6.7 Score=25.86 Aligned_cols=27 Identities=7% Similarity=-0.017 Sum_probs=23.4
Q ss_pred HHHHHhHHHhcCcHHHHHHHHHHHHHH
Q 013896 401 IRVTGNRLFKEGKFELAKAKYEKVIFS 427 (434)
Q Consensus 401 ~k~~gn~~~k~~~y~~A~~~Y~~a~~~ 427 (434)
...-|..+...|++.+|++.|+++++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345688899999999999999999875
No 64
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=67.54 E-value=11 Score=22.41 Aligned_cols=27 Identities=15% Similarity=0.297 Sum_probs=22.7
Q ss_pred HHHHHhHHHhcCcHHHHHHHHHHHHHH
Q 013896 401 IRVTGNRLFKEGKFELAKAKYEKVIFS 427 (434)
Q Consensus 401 ~k~~gn~~~k~~~y~~A~~~Y~~a~~~ 427 (434)
+-..|..+++.|++.+|++.|++.++-
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345688899999999999999998764
No 65
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=62.97 E-value=18 Score=25.62 Aligned_cols=31 Identities=26% Similarity=0.474 Sum_probs=26.3
Q ss_pred HHHHHHHHHhHHHhcCcHHHHHHHHHHHHHH
Q 013896 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVIFS 427 (434)
Q Consensus 397 ~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~ 427 (434)
...-....|.-++.+|+|..|+..|++++..
T Consensus 30 ~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 30 NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566788999999999999999999999864
No 66
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=61.38 E-value=17 Score=25.99 Aligned_cols=30 Identities=30% Similarity=0.310 Sum_probs=26.2
Q ss_pred HHHHHHHHhHHHhcC-cHHHHHHHHHHHHHH
Q 013896 398 AEKIRVTGNRLFKEG-KFELAKAKYEKVIFS 427 (434)
Q Consensus 398 a~~~k~~gn~~~k~~-~y~~A~~~Y~~a~~~ 427 (434)
+.-.-..|..+++.+ +|.+|++.|++|+.+
T Consensus 37 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 37 AEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 445778899999999 799999999999874
No 67
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=57.30 E-value=38 Score=25.60 Aligned_cols=41 Identities=17% Similarity=0.154 Sum_probs=36.6
Q ss_pred ChhhhHHHHHHHHHHHhHHHhcCcHHHHHHHHHHHHHHHhh
Q 013896 390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVIFSVLK 430 (434)
Q Consensus 390 ~~~e~~~~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~l~~ 430 (434)
..++.++.|..-.+.|..++++|++..|+-++.-|-.+|+.
T Consensus 27 ~a~~~~~mA~~Y~~D~~~fl~~gD~v~Ala~~sYa~GwLDA 67 (75)
T PF04010_consen 27 AAEEILEMAESYLEDGKYFLEKGDYVNALACFSYAHGWLDA 67 (75)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999888874
No 68
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=54.49 E-value=13 Score=26.64 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=17.7
Q ss_pred HHhcCcHHHHHHHHHHHHHHH
Q 013896 408 LFKEGKFELAKAKYEKVIFSV 428 (434)
Q Consensus 408 ~~k~~~y~~A~~~Y~~a~~~l 428 (434)
+++.|+|..|++.|++++..-
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~ 21 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN 21 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT
T ss_pred ChhccCHHHHHHHHHHHHHHC
Confidence 578899999999999998753
No 69
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=53.45 E-value=16 Score=35.27 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=25.8
Q ss_pred HHHHHHHHhHHHhcCcHHHHHHHHHHHHHH
Q 013896 398 AEKIRVTGNRLFKEGKFELAKAKYEKVIFS 427 (434)
Q Consensus 398 a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~ 427 (434)
.+..-.-|.+++..|+|++|++.|+|||.+
T Consensus 149 skay~RLG~A~~~~gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 149 SKAYGRLGLAYLALGKYEEAIEAYKKALEL 178 (304)
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHHhhhcc
Confidence 344667899999999999999999999864
No 70
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=51.65 E-value=12 Score=31.73 Aligned_cols=26 Identities=23% Similarity=0.567 Sum_probs=23.2
Q ss_pred HHHHHHhHHHhcCcHHHHHHHHHHHH
Q 013896 400 KIRVTGNRLFKEGKFELAKAKYEKVI 425 (434)
Q Consensus 400 ~~k~~gn~~~k~~~y~~A~~~Y~~a~ 425 (434)
..--+|.-+++.|++..|+..|++|+
T Consensus 120 ~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 120 AAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 34469999999999999999999985
No 71
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=50.03 E-value=31 Score=26.35 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhHHHhcCcHHHHHHHHHHHHHHHhh
Q 013896 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVIFSVLK 430 (434)
Q Consensus 396 ~~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~l~~ 430 (434)
..+.+.-++|-.+|.+-+..+|+++.++|++-+..
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~ 38 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITD 38 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCC
Confidence 35778889999999999999999999999987654
No 72
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=47.96 E-value=58 Score=26.56 Aligned_cols=45 Identities=22% Similarity=0.247 Sum_probs=38.4
Q ss_pred CCCChhhhHHHHHHHHHHHhHHHhcCcHHHHHHHHHHHHHHHhhh
Q 013896 387 TGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVIFSVLKI 431 (434)
Q Consensus 387 ~~~~~~e~~~~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~l~~~ 431 (434)
+..+...-+..|..+-.++..+++.|+.+.|--.|-|.+.+++.+
T Consensus 27 ~~~~l~~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~ki 71 (115)
T PF08969_consen 27 KNIPLKRYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLVEKI 71 (115)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCH
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 466778889999999999999999999999999999999988443
No 73
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=47.76 E-value=28 Score=25.14 Aligned_cols=30 Identities=23% Similarity=0.264 Sum_probs=25.8
Q ss_pred HHHHHHHHhHHHhcCcHHHHHHHHHHHHHH
Q 013896 398 AEKIRVTGNRLFKEGKFELAKAKYEKVIFS 427 (434)
Q Consensus 398 a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~ 427 (434)
..-....|.-+++.|+|..|++.+++++..
T Consensus 29 ~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 29 PELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred chhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344677999999999999999999999864
No 74
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=46.92 E-value=28 Score=36.15 Aligned_cols=35 Identities=29% Similarity=0.419 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHhHHHhcCcHHHHHHHHHHHHHHH
Q 013896 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVIFSV 428 (434)
Q Consensus 394 ~~~~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~l 428 (434)
....|.+.|+-||..+++.+|..|++.|.+|+.+=
T Consensus 220 ~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~ 254 (539)
T KOG0548|consen 220 VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA 254 (539)
T ss_pred HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh
Confidence 56678999999999999999999999999998864
No 75
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=46.57 E-value=42 Score=32.09 Aligned_cols=40 Identities=20% Similarity=0.246 Sum_probs=33.1
Q ss_pred CCChhhhHHHHHHHHHHHhHHHhcCcHHHHHHHHHHHHHH
Q 013896 388 GLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVIFS 427 (434)
Q Consensus 388 ~~~~~e~~~~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~ 427 (434)
.++.+.+.....-+=..|+.+|++++|..|++-|+-|+.-
T Consensus 236 ~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~~ 275 (278)
T PF08631_consen 236 QLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALHS 275 (278)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Confidence 4566666666677888999999999999999999999853
No 76
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=46.40 E-value=27 Score=35.74 Aligned_cols=35 Identities=26% Similarity=0.298 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHhHHHhcCcHHHHHHHHHHHHHH
Q 013896 393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVIFS 427 (434)
Q Consensus 393 e~~~~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~ 427 (434)
.....+...-..|+.||+.++|.+|+..|++|+.+
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL 104 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL 104 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34446677778899999999999999999999875
No 77
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.99 E-value=21 Score=39.09 Aligned_cols=33 Identities=30% Similarity=0.379 Sum_probs=29.7
Q ss_pred HHHHHHHHhHHHhcCcHHHHHHHHHHHHHHHhh
Q 013896 398 AEKIRVTGNRLFKEGKFELAKAKYEKVIFSVLK 430 (434)
Q Consensus 398 a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~l~~ 430 (434)
+.-++.-|+.+|++|+|..|..-|.+++.+|+-
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~ 400 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP 400 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh
Confidence 555889999999999999999999999998864
No 78
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=43.90 E-value=43 Score=29.24 Aligned_cols=34 Identities=21% Similarity=0.175 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHhHHHhcCcHHHHHHHHHHHHHH
Q 013896 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVIFS 427 (434)
Q Consensus 394 ~~~~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~ 427 (434)
+...+......|..++..++|..|+..|++|+..
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 64 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKL 64 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555666667777777777777777777653
No 79
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=43.20 E-value=23 Score=25.58 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=18.0
Q ss_pred chHHHHHhcCccccEEEEEEeee
Q 013896 209 KGLEMGIGTMTREEKAVIYVTSQ 231 (434)
Q Consensus 209 ~gl~~~l~~mk~Ge~~~~~v~~~ 231 (434)
.-+..|+..|+.||++++++++.
T Consensus 35 ~El~sA~~HlH~GEkA~V~FkS~ 57 (68)
T PF09122_consen 35 AELKSALVHLHIGEKAQVFFKSQ 57 (68)
T ss_dssp HHHHHHHTT-BTT-EEEEEETTS
T ss_pred HHHHHHHHHhhcCceeEEEEecC
Confidence 45888999999999999998765
No 80
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=43.13 E-value=52 Score=21.28 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=22.7
Q ss_pred HHhHHHhcCcHHHHHHHHHHHHHHHhhh
Q 013896 404 TGNRLFKEGKFELAKAKYEKVIFSVLKI 431 (434)
Q Consensus 404 ~gn~~~k~~~y~~A~~~Y~~a~~~l~~~ 431 (434)
-|.--+-..+|.+|+.=|++||.+....
T Consensus 7 Lgeisle~e~f~qA~~D~~~aL~i~~~l 34 (38)
T PF10516_consen 7 LGEISLENENFEQAIEDYEKALEIQEEL 34 (38)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 3555667889999999999999987653
No 81
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=42.04 E-value=38 Score=32.42 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhHHHhc-CcHHHHHHHHHHHHHHHhhhh
Q 013896 396 DEAEKIRVTGNRLFKE-GKFELAKAKYEKVIFSVLKIA 432 (434)
Q Consensus 396 ~~a~~~k~~gn~~~k~-~~y~~A~~~Y~~a~~~l~~~~ 432 (434)
..|..++.-|+-+-+. ++++.|+..|++|+.+++...
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~ 149 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG 149 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 3456677777777777 899999999999999987653
No 82
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=41.13 E-value=46 Score=25.01 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=14.1
Q ss_pred HHHhHHHhcCcHHHHHHHHHHH
Q 013896 403 VTGNRLFKEGKFELAKAKYEKV 424 (434)
Q Consensus 403 ~~gn~~~k~~~y~~A~~~Y~~a 424 (434)
..|.-+++.++|.+|++.|++|
T Consensus 63 l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 63 LLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHhcC
Confidence 3366677777777777777665
No 83
>COG4387 Mu-like prophage protein gp36 [Function unknown]
Probab=38.82 E-value=31 Score=28.52 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=19.6
Q ss_pred cHHHHHHHHHHHHHHHhhhhcC
Q 013896 413 KFELAKAKYEKVIFSVLKIACG 434 (434)
Q Consensus 413 ~y~~A~~~Y~~a~~~l~~~~~~ 434 (434)
--.+|..+|+.|+++|+.+++|
T Consensus 82 ~Tdq~r~rYe~av~~L~~va~G 103 (139)
T COG4387 82 ATDQARQRYEDAVRFLEKVASG 103 (139)
T ss_pred hhHHHHHHHHHHHHHHHHHHcC
Confidence 4568999999999999999987
No 84
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=38.62 E-value=91 Score=19.79 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=19.0
Q ss_pred HHHHhHHHhcCcHHHHHHH--HHHHHHH
Q 013896 402 RVTGNRLFKEGKFELAKAK--YEKVIFS 427 (434)
Q Consensus 402 k~~gn~~~k~~~y~~A~~~--Y~~a~~~ 427 (434)
..-|-.++..|+|..|++. |+-+..+
T Consensus 5 y~~a~~~y~~~ky~~A~~~~~y~~l~~l 32 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHFFQYAFLCAL 32 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 4457889999999999999 5455443
No 85
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=37.49 E-value=52 Score=29.24 Aligned_cols=31 Identities=16% Similarity=0.114 Sum_probs=26.9
Q ss_pred HHHHHHHHhHHHhcCcHHHHHHHHHHHHHHH
Q 013896 398 AEKIRVTGNRLFKEGKFELAKAKYEKVIFSV 428 (434)
Q Consensus 398 a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~l 428 (434)
-.-+.+.|+-+++.|++..|++.|.++..+-
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~ 66 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYC 66 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc
Confidence 3447789999999999999999999988763
No 86
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=34.99 E-value=17 Score=37.03 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=23.1
Q ss_pred HHHHhHHHhcCcHHHHHHHHHHHHHH
Q 013896 402 RVTGNRLFKEGKFELAKAKYEKVIFS 427 (434)
Q Consensus 402 k~~gn~~~k~~~y~~A~~~Y~~a~~~ 427 (434)
-..||-+||+.+|.+|++.|+.||.-
T Consensus 241 mnigni~~kkr~fskaikfyrmaldq 266 (840)
T KOG2003|consen 241 MNIGNIHFKKREFSKAIKFYRMALDQ 266 (840)
T ss_pred eeecceeeehhhHHHHHHHHHHHHhh
Confidence 35799999999999999999999754
No 87
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=34.34 E-value=44 Score=24.13 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=17.7
Q ss_pred ccHHHhhcCCCCCcEEEEEEecc
Q 013896 90 LGLLEGIPTMLKGEVSMFKMKPQ 112 (434)
Q Consensus 90 ~g~~~al~~m~~Ge~~~i~ip~~ 112 (434)
+.+..|+..|+.||++.+++.+.
T Consensus 35 ~El~sA~~HlH~GEkA~V~FkS~ 57 (68)
T PF09122_consen 35 AELKSALVHLHIGEKAQVFFKSQ 57 (68)
T ss_dssp HHHHHHHTT-BTT-EEEEEETTS
T ss_pred HHHHHHHHHhhcCceeEEEEecC
Confidence 45889999999999999987654
No 88
>PF02071 NSF: Aromatic-di-Alanine (AdAR) repeat ; InterPro: IPR000744 Regulated exocytosis of neurotransmitters and hormones, as well as intracellular traffic, requires fusion of two lipid bilayers. SNARE proteins are thought to form a protein bridge, the SNARE complex, between an incoming vesicle and the acceptor compartment. SNARE proteins contribute to the specificity of membrane fusion, implying that the mechanisms by which SNAREs are targeted to subcellular compartments are important for specific docking and fusion of vesicles. This mechanism involves a family of conserved proteins, members of which appear to function at all sites of constitutive and regulated secretion in eukaryotes []. Among them are 2 types of cytosolic protein, NSF (N-ethyl-maleimide-sensitive protein) and the SNAPs (alpha-, beta- and gamma-soluble NSF attachment proteins). The yeast vesicular fusion protein, sec17, a cytoplasmic peripheral membrane protein involved in vesicular transport between the endoplasmic reticulum and the golgi apparatus, shows a high degree of sequence similarity to the alpha-SNAP family. SNAP-25 and its non-neuronal homologue Syndet/SNAP-23 are synthesized as soluble proteins in the cytosol. Both SNAP-25 and Syndet/SNAP-23 are palmitoylated at cysteine residues clustered in a loop between two N- and C-terminal coils and palmitoylation is essential for membrane binding and plasma membrane targeting. The C-terminal and the N-terminal helices of SNAP-25, are each targeted to the plasma membrane by two distinct cysteine-rich domains and appear to regulate the availability of SNAP to form complexes with SNARE [].; GO: 0006886 intracellular protein transport
Probab=33.59 E-value=21 Score=17.03 Aligned_cols=11 Identities=36% Similarity=0.220 Sum_probs=6.9
Q ss_pred HHHHHHHHHHH
Q 013896 417 AKAKYEKVIFS 427 (434)
Q Consensus 417 A~~~Y~~a~~~ 427 (434)
|++.|++|-.+
T Consensus 1 A~~~y~~Aa~~ 11 (12)
T PF02071_consen 1 AIKCYEKAAEC 11 (12)
T ss_pred CcHHHHHHHhh
Confidence 45677777654
No 89
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=33.48 E-value=53 Score=23.43 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=10.0
Q ss_pred HHhHHHhcCcHHHHHHHHHHHH
Q 013896 404 TGNRLFKEGKFELAKAKYEKVI 425 (434)
Q Consensus 404 ~gn~~~k~~~y~~A~~~Y~~a~ 425 (434)
.|..++..++|.+|+..+++++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~ 27 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKAL 27 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHH
Confidence 3444444444444444444443
No 90
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=33.21 E-value=53 Score=27.87 Aligned_cols=26 Identities=8% Similarity=0.056 Sum_probs=15.1
Q ss_pred HHHHHhHHHhcCcHHHHHHHHHHHHH
Q 013896 401 IRVTGNRLFKEGKFELAKAKYEKVIF 426 (434)
Q Consensus 401 ~k~~gn~~~k~~~y~~A~~~Y~~a~~ 426 (434)
....|..+.+.|+|..|+..|++|+.
T Consensus 61 ~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 61 HIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34555556666666666666666554
No 91
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=32.42 E-value=62 Score=29.20 Aligned_cols=31 Identities=13% Similarity=0.166 Sum_probs=26.8
Q ss_pred HHHHHHHhHHHhcCcHHHHHHHHHHHHHHHh
Q 013896 399 EKIRVTGNRLFKEGKFELAKAKYEKVIFSVL 429 (434)
Q Consensus 399 ~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~l~ 429 (434)
.-+-..|..+|+.|+|.+|+..|++++....
T Consensus 145 ~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 145 TALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3467789999999999999999999998754
No 92
>PF05942 PaREP1: Archaeal PaREP1/PaREP8 family; InterPro: IPR010268 This family consists of several archaeal PaREP1 proteins, the function of the family is unknown.; PDB: 2Q00_A 2JPU_A.
Probab=30.53 E-value=90 Score=25.46 Aligned_cols=36 Identities=25% Similarity=0.316 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHhHHHhcCcHHHHHHHHHHHHHHHh
Q 013896 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVIFSVL 429 (434)
Q Consensus 394 ~~~~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~l~ 429 (434)
+++.|...-+.+.++.++|.+.+|..+|-+|.+.+.
T Consensus 2 rl~~a~~~l~~A~e~L~~G~~rqAaeK~~~A~~~~i 37 (115)
T PF05942_consen 2 RLEEAEKELEEADELLEKGDLRQAAEKAFKAVEAAI 37 (115)
T ss_dssp --BHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 455677777888999999999999988887776543
No 93
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=30.40 E-value=62 Score=23.22 Aligned_cols=23 Identities=13% Similarity=0.118 Sum_probs=19.6
Q ss_pred hHHHhcCcHHHHHHHHHHHHHHH
Q 013896 406 NRLFKEGKFELAKAKYEKVIFSV 428 (434)
Q Consensus 406 n~~~k~~~y~~A~~~Y~~a~~~l 428 (434)
+.++++++|.+|++.+++++..-
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~ 25 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD 25 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC
Confidence 46788999999999999998763
No 94
>COG1278 CspC Cold shock proteins [Transcription]
Probab=29.58 E-value=1.6e+02 Score=21.82 Aligned_cols=20 Identities=40% Similarity=0.499 Sum_probs=16.6
Q ss_pred cCCCCCCCCCC-CeEEEEEEE
Q 013896 162 EGQGWETPRAP-YEVKAWISA 181 (434)
Q Consensus 162 ~G~g~~~p~~g-d~V~v~y~~ 181 (434)
.|=|...|.+| ..|.|||++
T Consensus 13 KGfGFI~p~~G~~DvFVH~Sa 33 (67)
T COG1278 13 KGFGFITPEDGGKDVFVHISA 33 (67)
T ss_pred CcceEcCCCCCCcCEEEEeee
Confidence 56777788888 589999988
No 95
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=28.33 E-value=80 Score=31.45 Aligned_cols=30 Identities=23% Similarity=0.162 Sum_probs=25.7
Q ss_pred HHHHHHHhHHHhcCcHHHHHHHHHHHHHHH
Q 013896 399 EKIRVTGNRLFKEGKFELAKAKYEKVIFSV 428 (434)
Q Consensus 399 ~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~l 428 (434)
.-....|+.++..|+|..|++.|++|+.+-
T Consensus 71 ~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 71 KAYLRKGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 346678999999999999999999999764
No 96
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=27.94 E-value=1e+02 Score=25.06 Aligned_cols=29 Identities=17% Similarity=0.362 Sum_probs=19.8
Q ss_pred HHHHHHHhHHHhcCcHHHHHHHHHHHHHH
Q 013896 399 EKIRVTGNRLFKEGKFELAKAKYEKVIFS 427 (434)
Q Consensus 399 ~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~ 427 (434)
..+...|..+++.++|..|.+.|++++..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 46 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAY 46 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 34566777777777777777777776653
No 97
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=27.39 E-value=1.8e+02 Score=29.76 Aligned_cols=38 Identities=13% Similarity=0.226 Sum_probs=30.2
Q ss_pred hhhhHHHHHHHHHHHhHHHhcCcHHHHHHHHHHHHHHHhhh
Q 013896 391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVIFSVLKI 431 (434)
Q Consensus 391 ~~e~~~~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~l~~~ 431 (434)
.++.+..| -..+-.+|++++|..|+-+|+.||++....
T Consensus 172 iDkwl~vA---L~das~~yrqk~ya~Aa~rF~taLelcskg 209 (569)
T PF15015_consen 172 IDKWLQVA---LKDASSCYRQKKYAVAAGRFRTALELCSKG 209 (569)
T ss_pred HHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHHHHHHhhh
Confidence 34445544 457889999999999999999999987654
No 98
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=27.14 E-value=1.1e+02 Score=26.63 Aligned_cols=31 Identities=13% Similarity=0.061 Sum_probs=26.6
Q ss_pred HHHHHHHHhHHHhcCcHHHHHHHHHHHHHHH
Q 013896 398 AEKIRVTGNRLFKEGKFELAKAKYEKVIFSV 428 (434)
Q Consensus 398 a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~l 428 (434)
+......|..+++.|+|..|+..|++|+.+.
T Consensus 72 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 102 (172)
T PRK02603 72 SYILYNMGIIYASNGEHDKALEYYHQALELN 102 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3456778999999999999999999999863
No 99
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=26.73 E-value=94 Score=26.29 Aligned_cols=29 Identities=28% Similarity=0.266 Sum_probs=25.5
Q ss_pred HHHHHHHhHHHhcCcHHHHHHHHHHHHHH
Q 013896 399 EKIRVTGNRLFKEGKFELAKAKYEKVIFS 427 (434)
Q Consensus 399 ~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~ 427 (434)
...-..|..+++.|++..|+..|++|+..
T Consensus 93 ~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 93 EPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34677889999999999999999999875
No 100
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=26.63 E-value=98 Score=23.70 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=19.4
Q ss_pred EEEEEEEEeCCCcEEeecCCCCCeEEEeCCCCccchHHHHHhcCccccEEEEEE
Q 013896 175 VKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV 228 (434)
Q Consensus 175 V~v~y~~~~~dg~~~~s~~~~~p~~~~~g~~~~~~gl~~~l~~mk~Ge~~~~~v 228 (434)
-.+.+.++..+|+.+..+.++..|+-.++. ..+.+||..++..
T Consensus 24 q~~D~~v~d~~g~~vwrwS~~~~FtQal~~-----------~~l~pGe~~~~~~ 66 (82)
T PF12690_consen 24 QRYDFVVKDKEGKEVWRWSDGKMFTQALQE-----------ETLEPGESLTYEE 66 (82)
T ss_dssp --EEEEEE-TT--EEEETTTT-------EE-----------EEE-TT-EEEEEE
T ss_pred CEEEEEEECCCCCEEEEecCCchhhheeeE-----------EEECCCCEEEEEE
Confidence 356667777899999987777766544321 2466777766654
No 101
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=26.39 E-value=1e+02 Score=24.06 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=21.0
Q ss_pred HHHHHhHHHhcCcHHHHHHHHHHHHHH
Q 013896 401 IRVTGNRLFKEGKFELAKAKYEKVIFS 427 (434)
Q Consensus 401 ~k~~gn~~~k~~~y~~A~~~Y~~a~~~ 427 (434)
.-..|..+++.++|..|++.|++++..
T Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~~~~ 68 (119)
T TIGR02795 42 HYWLGEAYYAQGKYADAAKAFLAVVKK 68 (119)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 445788888888888888888888753
No 102
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=25.74 E-value=55 Score=24.10 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=16.4
Q ss_pred HHHHHhHHHhcCcHHHHHHHH
Q 013896 401 IRVTGNRLFKEGKFELAKAKY 421 (434)
Q Consensus 401 ~k~~gn~~~k~~~y~~A~~~Y 421 (434)
..++=|.+|.+|+|++|++.=
T Consensus 9 ~~~~F~~l~~~g~y~eAA~~A 29 (66)
T PF13838_consen 9 YVQQFNELFSQGQYEEAAKVA 29 (66)
T ss_dssp HHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 456678999999999999863
No 103
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=25.58 E-value=1.2e+02 Score=31.91 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhHHHhcCcHHHHHHHHHHHHHHHhhh
Q 013896 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVIFSVLKI 431 (434)
Q Consensus 395 ~~~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~l~~~ 431 (434)
+..+..++.-|+.+...++|.+|+..|++|+..++.+
T Consensus 238 l~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 238 LVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 4445556678999999999999999999999998853
No 104
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=25.07 E-value=1.1e+02 Score=21.32 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=18.3
Q ss_pred HHhHHHhcCcHHHHHHHHHHHHHH
Q 013896 404 TGNRLFKEGKFELAKAKYEKVIFS 427 (434)
Q Consensus 404 ~gn~~~k~~~y~~A~~~Y~~a~~~ 427 (434)
-+..+||.|+|..|.+.-+.+|+.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh
Confidence 456789999999999888777653
No 105
>PF07030 DUF1320: Protein of unknown function (DUF1320); InterPro: IPR009752 This entry is represented by the Bacteriophage Mu, Gp36. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=24.71 E-value=84 Score=26.32 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhhhhcC
Q 013896 414 FELAKAKYEKVIFSVLKIACG 434 (434)
Q Consensus 414 y~~A~~~Y~~a~~~l~~~~~~ 434 (434)
.+.-.++|+.|+++|+.++.|
T Consensus 84 ~e~~~~rY~~A~~~L~~ia~G 104 (130)
T PF07030_consen 84 TEPVRERYKDAIKWLEDIAKG 104 (130)
T ss_pred cHHHHHHHHHHHHHHHHHHCC
Confidence 678899999999999999887
No 106
>PF15469 Sec5: Exocyst complex component Sec5
Probab=23.21 E-value=92 Score=27.59 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=22.4
Q ss_pred hHHHhcCcHHHHHHHHHHHHHHHhhh
Q 013896 406 NRLFKEGKFELAKAKYEKVIFSVLKI 431 (434)
Q Consensus 406 n~~~k~~~y~~A~~~Y~~a~~~l~~~ 431 (434)
.++.++++|..|++-|.||..++...
T Consensus 94 ~~~i~~~dy~~~i~dY~kak~l~~~~ 119 (182)
T PF15469_consen 94 RECIKKGDYDQAINDYKKAKSLFEKY 119 (182)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 45568999999999999999998764
No 107
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=23.17 E-value=3.5e+02 Score=20.71 Aligned_cols=70 Identities=11% Similarity=0.035 Sum_probs=39.1
Q ss_pred EEEeeecCCCCCCCCCCCeEEEEEEEEeCCCc---EEee--cCC--CCCeEEEeCCCCccch-HHHHHhcCccccEEEEE
Q 013896 156 VKKVINEGQGWETPRAPYEVKAWISAKTGDGK---LILS--HRE--GEPYFFTFGKSEVPKG-LEMGIGTMTREEKAVIY 227 (434)
Q Consensus 156 ~k~i~~~G~g~~~p~~gd~V~v~y~~~~~dg~---~~~s--~~~--~~p~~~~~g~~~~~~g-l~~~l~~mk~Ge~~~~~ 227 (434)
+............-.+|+.+.++.. .+|. .-+| +.. ...+.+.+. ....| +...|..|++|+++.+.
T Consensus 17 ~~~~~~~~~~~~~~~pGQ~v~v~~~---~~~~~~~R~yS~~s~~~~~~~~~~~ik--~~~~G~~S~~L~~l~~Gd~v~i~ 91 (99)
T PF00970_consen 17 FRFKLPDPDQKLDFKPGQFVSVRVP---INGKQVSRPYSPASSPDDKGYLEFAIK--RYPNGRVSRYLHQLKPGDEVEIR 91 (99)
T ss_dssp EEEEESSTTTT-SSTTT-EEEEEEE---ETTEEEEEEEEBCSSTTSSSEEEEEEE--ECTTSHHHHHHHTSCTTSEEEEE
T ss_pred EEEEECCCCcccccCcceEEEEEEc---cCCcceecceeEeeecCCCCcEEEEEE--eccCCHHHHHHHhCCCCCEEEEE
Confidence 3333333333345678999998887 3444 2333 222 223444442 22334 67778899999999887
Q ss_pred Eee
Q 013896 228 VTS 230 (434)
Q Consensus 228 v~~ 230 (434)
-|-
T Consensus 92 gP~ 94 (99)
T PF00970_consen 92 GPY 94 (99)
T ss_dssp EEE
T ss_pred Ecc
Confidence 663
No 108
>PF13041 PPR_2: PPR repeat family
Probab=22.86 E-value=1e+02 Score=20.43 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=17.8
Q ss_pred hHHHhcCcHHHHHHHHHHHHH
Q 013896 406 NRLFKEGKFELAKAKYEKVIF 426 (434)
Q Consensus 406 n~~~k~~~y~~A~~~Y~~a~~ 426 (434)
..+.+++++.+|.+.|++..+
T Consensus 11 ~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 11 SGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHCcCHHHHHHHHHHHHH
Confidence 357899999999999998764
No 109
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=22.57 E-value=1.1e+02 Score=28.70 Aligned_cols=30 Identities=17% Similarity=0.156 Sum_probs=25.8
Q ss_pred HHHHHhHHHhcCcHHHHHHHHHHHHHHHhh
Q 013896 401 IRVTGNRLFKEGKFELAKAKYEKVIFSVLK 430 (434)
Q Consensus 401 ~k~~gn~~~k~~~y~~A~~~Y~~a~~~l~~ 430 (434)
..+.|.++|+.|+|.+|++.|++++...++
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~ 210 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRR 210 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 448899999999999999999999766553
No 110
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=22.18 E-value=1.3e+02 Score=27.27 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=19.3
Q ss_pred HHHHHHHHhHHHhcCcHHHHHHHHHHHHHH
Q 013896 398 AEKIRVTGNRLFKEGKFELAKAKYEKVIFS 427 (434)
Q Consensus 398 a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~ 427 (434)
+..+-..|..+++.++|..|+..|++++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~ 62 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESR 62 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345566666677777777777777666554
No 111
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=22.17 E-value=1.4e+02 Score=28.38 Aligned_cols=38 Identities=21% Similarity=0.136 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHhHHHhcCcHHHHHHHHHHHHHHHhh
Q 013896 393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVIFSVLK 430 (434)
Q Consensus 393 e~~~~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~l~~ 430 (434)
.--+.+....+-||.+-..++|.+|..+|.+|..+...
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~ 67 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEK 67 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 33456777888888888899999999999999888764
No 112
>PRK12450 foldase protein PrsA; Reviewed
Probab=21.58 E-value=1.1e+02 Score=29.74 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=22.7
Q ss_pred EEeCCCCcchHHHHHHhcCCcccEEEEE
Q 013896 322 FSSGEGLVPEGFEMCVRLMLPGEIALVT 349 (434)
Q Consensus 322 ~~lG~~~~~~gle~~l~~M~~Ge~~~v~ 349 (434)
|.-|++.+++.|+.++..|++||.+.++
T Consensus 195 f~~~~~~l~~ef~~aa~~Lk~GevS~~i 222 (309)
T PRK12450 195 FDSGETTLPAEVVRAASGLKEGNRSEII 222 (309)
T ss_pred ccCCCCCCCHHHHHHHHcCCCCCccccc
Confidence 4335567999999999999999987654
No 113
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=21.42 E-value=98 Score=17.75 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=14.2
Q ss_pred CcHHHHHHHHHHHHHHHh
Q 013896 412 GKFELAKAKYEKVIFSVL 429 (434)
Q Consensus 412 ~~y~~A~~~Y~~a~~~l~ 429 (434)
+++..|...|++|+..+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~ 18 (33)
T smart00386 1 GDIERARKIYERALEKFP 18 (33)
T ss_pred CcHHHHHHHHHHHHHHCC
Confidence 467889999999987654
No 114
>COG1849 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.37 E-value=3.3e+02 Score=21.36 Aligned_cols=41 Identities=15% Similarity=0.068 Sum_probs=36.4
Q ss_pred ChhhhHHHHHHHHHHHhHHHhcCcHHHHHHHHHHHHHHHhh
Q 013896 390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVIFSVLK 430 (434)
Q Consensus 390 ~~~e~~~~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~l~~ 430 (434)
..+..++.|..--+.+..++.+|+|..|..+..-|-.+|+.
T Consensus 33 ~ae~~~~ma~~Y~~Dakyf~ekGD~vtAfa~~sYa~g~lDa 73 (90)
T COG1849 33 AAEDFVDMAESYFEDAKYFLEKGDYVTAFAALSYAHGWLDA 73 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999999999999999988888764
No 115
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=20.99 E-value=1.4e+02 Score=17.31 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=17.0
Q ss_pred hHHHhcCcHHHHHHHHHHHHH
Q 013896 406 NRLFKEGKFELAKAKYEKVIF 426 (434)
Q Consensus 406 n~~~k~~~y~~A~~~Y~~a~~ 426 (434)
+.+.+.+++.+|.+.|++..+
T Consensus 8 ~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 8 DGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 347889999999999988654
No 116
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=20.79 E-value=1.1e+02 Score=17.35 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=16.7
Q ss_pred hHHHhcCcHHHHHHHHHHHHH
Q 013896 406 NRLFKEGKFELAKAKYEKVIF 426 (434)
Q Consensus 406 n~~~k~~~y~~A~~~Y~~a~~ 426 (434)
+.+.+.+++.+|.+.|++..+
T Consensus 8 ~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 8 SGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHccchHHHHHHHHHHHhH
Confidence 457788999999999987653
No 117
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=20.73 E-value=1.7e+02 Score=25.09 Aligned_cols=32 Identities=22% Similarity=0.178 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhHHHhcCcHHHHHHHHHHHHHH
Q 013896 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVIFS 427 (434)
Q Consensus 396 ~~a~~~k~~gn~~~k~~~y~~A~~~Y~~a~~~ 427 (434)
..+......|..++..++|..|+..|++|+..
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l 64 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRL 64 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 35566667777777778888888888877765
Done!