BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013898
(434 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SQD|A Chain A, Structural Basis For Inhibitor Selectivity Revealed By
Crystal Structures Of Plant And Mammalian 4-
Hydroxyphenylpyruvate Dioxygenases
pdb|1TFZ|A Chain A, Structural Basis For Herbicidal Inhibitor Selectivity
Revealed By Comparison Of Crystal Structures Of Plant
And Mammalian 4- Hydroxyphenylpyruvate Dioxygenases
pdb|1TG5|A Chain A, Crystal Structures Of Plant 4-Hydroxyphenylpyruvate
Dioxygenases Complexed With Das645
Length = 424
Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/417 (73%), Positives = 348/417 (83%), Gaps = 1/417 (0%)
Query: 11 KLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTV 70
KLVGF FVR+NPKSD+F+V RFHH+EFWC DATN ARRFSWGLGM AKSDLSTGN V
Sbjct: 4 KLVGFSKFVRKNPKSDKFKVKRFHHIEFWCGDATNVARRFSWGLGMRFSAKSDLSTGNMV 63
Query: 71 HASYLLRSGDLRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAV 130
HASYLL SGDLRF+FTAPYSP +P+FDH +CRSF +SHGL R++A+
Sbjct: 64 HASYLLTSGDLRFLFTAPYSPSLSAGEIKPTTTASIPSFDHGSCRSFFSSHGLGVRAVAI 123
Query: 131 EVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYK-DKANHLDFLP 189
EVEDA+ AF+ SVA+GA PSSPP++L+ IAEV+LYGDVVLRYVSYK + +FLP
Sbjct: 124 EVEDAESAFSISVANGAIPSSPPIVLNEAVTIAEVKLYGDVVLRYVSYKAEDTEKSEFLP 183
Query: 190 GFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESG 249
GFE ++ SSFPLDYGIRRLDHAVGNVPEL PA+ YV FTGFH+FAEFTA+DVGT+ESG
Sbjct: 184 GFERVEDASSFPLDYGIRRLDHAVGNVPELGPALTYVAGFTGFHQFAEFTADDVGTAESG 243
Query: 250 LNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMR 309
LNS VLA+NDEMVLLP+NEPV GTKRKSQIQTYLEHNEGAG+QHLAL+SEDIFRTLREMR
Sbjct: 244 LNSAVLASNDEMVLLPINEPVHGTKRKSQIQTYLEHNEGAGLQHLALMSEDIFRTLREMR 303
Query: 310 KRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKP 369
KRS +GGF+FMPSPPPTYY+NLK R GDVL+D+QIK+CEELG+LVDRDDQGTLLQIFTKP
Sbjct: 304 KRSSIGGFDFMPSPPPTYYQNLKKRVGDVLSDDQIKECEELGILVDRDDQGTLLQIFTKP 363
Query: 370 VGDRPTIFIEIIQRVGCMLKDEEXXXXXXXXXXXXXXXNFSELFKSIEEYEKTLGAK 426
+GDRPTIFIEIIQRVGCM+KDEE NFSELFKSIEEYEKTL AK
Sbjct: 364 LGDRPTIFIEIIQRVGCMMKDEEGKAYQSGGCGGFGKGNFSELFKSIEEYEKTLEAK 420
>pdb|1SP9|A Chain A, 4-hydroxyphenylpyruvate Dioxygenase
pdb|1SP9|B Chain B, 4-hydroxyphenylpyruvate Dioxygenase
Length = 445
Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/417 (73%), Positives = 348/417 (83%), Gaps = 1/417 (0%)
Query: 11 KLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTV 70
KLVGF FVR+NPKSD+F+V RFHH+EFWC DATN ARRFSWGLGM AKSDLSTGN V
Sbjct: 25 KLVGFSKFVRKNPKSDKFKVKRFHHIEFWCGDATNVARRFSWGLGMRFSAKSDLSTGNMV 84
Query: 71 HASYLLRSGDLRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAV 130
HASYLL SGDLRF+FTAPYSP +P+FDH +CRSF +SHGL R++A+
Sbjct: 85 HASYLLTSGDLRFLFTAPYSPSLSAGEIKPTTTASIPSFDHGSCRSFFSSHGLGVRAVAI 144
Query: 131 EVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYK-DKANHLDFLP 189
EVEDA+ AF+ SVA+GA PSSPP++L+ IAEV+LYGDVVLRYVSYK + +FLP
Sbjct: 145 EVEDAESAFSISVANGAIPSSPPIVLNEAVTIAEVKLYGDVVLRYVSYKAEDTEKSEFLP 204
Query: 190 GFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESG 249
GFE ++ SSFPLDYGIRRLDHAVGNVPEL PA+ YV FTGFH+FAEFTA+DVGT+ESG
Sbjct: 205 GFERVEDASSFPLDYGIRRLDHAVGNVPELGPALTYVAGFTGFHQFAEFTADDVGTAESG 264
Query: 250 LNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMR 309
LNS VLA+NDEMVLLP+NEPV GTKRKSQIQTYLEHNEGAG+QHLAL+SEDIFRTLREMR
Sbjct: 265 LNSAVLASNDEMVLLPINEPVHGTKRKSQIQTYLEHNEGAGLQHLALMSEDIFRTLREMR 324
Query: 310 KRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKP 369
KRS +GGF+FMPSPPPTYY+NLK R GDVL+D+QIK+CEELG+LVDRDDQGTLLQIFTKP
Sbjct: 325 KRSSIGGFDFMPSPPPTYYQNLKKRVGDVLSDDQIKECEELGILVDRDDQGTLLQIFTKP 384
Query: 370 VGDRPTIFIEIIQRVGCMLKDEEXXXXXXXXXXXXXXXNFSELFKSIEEYEKTLGAK 426
+GDRPTIFIEIIQRVGCM+KDEE NFSELFKSIEEYEKTL AK
Sbjct: 385 LGDRPTIFIEIIQRVGCMMKDEEGKAYQSGGCGGFGKGNFSELFKSIEEYEKTLEAK 441
>pdb|1SP8|A Chain A, 4-hydroxyphenylpyruvate Dioxygenase
pdb|1SP8|B Chain B, 4-hydroxyphenylpyruvate Dioxygenase
pdb|1SP8|C Chain C, 4-hydroxyphenylpyruvate Dioxygenase
pdb|1SP8|D Chain D, 4-hydroxyphenylpyruvate Dioxygenase
Length = 418
Score = 486 bits (1250), Expect = e-137, Method: Compositional matrix adjust.
Identities = 261/416 (62%), Positives = 305/416 (73%), Gaps = 8/416 (1%)
Query: 11 KLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTV 70
+LVG +NFVR NP+SDRF FHHVE WC DA + A RFS+GLG P+ A+SDLSTGN+
Sbjct: 10 RLVGHRNFVRFNPRSDRFHTLAFHHVELWCADAASAAGRFSFGLGAPLAARSDLSTGNSA 69
Query: 71 HASYLLRSGDLRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAV 130
HAS LLRSG L F+FTAPY+ LP+F AA R FAA HGLA R++A+
Sbjct: 70 HASLLLRSGSLSFLFTAPYA------HGADAATAALPSFSAAAARRFAADHGLAVRAVAL 123
Query: 131 EVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKANHLDFLPG 190
V DA+ AF SVA GA+P+ PV L +AEV+LYGDVVLRYVSY D A FLPG
Sbjct: 124 RVADAEDAFRASVAAGARPAFGPVDLGRGFRLAEVELYGDVVLRYVSYPDGAAGEPFLPG 183
Query: 191 FEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGL 250
FE S DYG+ R DH VGNVPELAPA AY FTGFHEFAEFT EDVGT+ESGL
Sbjct: 184 FEGV--ASPGAADYGLSRFDHIVGNVPELAPAAAYFAGFTGFHEFAEFTTEDVGTAESGL 241
Query: 251 NSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRK 310
NS+VLANN E VLLP+NEPV GTKR+SQIQT+L+H+ G GVQH+AL S+D+ RTLREM+
Sbjct: 242 NSMVLANNSENVLLPLNEPVHGTKRRSQIQTFLDHHGGPGVQHMALASDDVLRTLREMQA 301
Query: 311 RSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPV 370
RS +GGFEFM P YY ++ RAGDVLT+ QIK+C+ELGVLVDRDDQG LLQIFTKPV
Sbjct: 302 RSAMGGFEFMAPPTSDYYDGVRRRAGDVLTEAQIKECQELGVLVDRDDQGVLLQIFTKPV 361
Query: 371 GDRPTIFIEIIQRVGCMLKDEEXXXXXXXXXXXXXXXNFSELFKSIEEYEKTLGAK 426
GDRPT+F+EIIQR+GCM KDE+ NFS+LFKSIE+YEK+L AK
Sbjct: 362 GDRPTLFLEIIQRIGCMEKDEKGQEYQKGGCGGFGKGNFSQLFKSIEDYEKSLEAK 417
>pdb|3ISQ|A Chain A, Crystal Structure Of Human 4-Hydroxyphenylpyruvate
Dioxygenase
Length = 393
Score = 201 bits (511), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 145/419 (34%), Positives = 201/419 (47%), Gaps = 53/419 (12%)
Query: 24 KSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRF 83
K +R R FH V FW +A A + +G +A L TG+ S++++ G + F
Sbjct: 3 KPERGRFLHFHSVTFWVGNAKQAASFYCSKMGFEPLAYRGLETGSREVVSHVIKQGKIVF 62
Query: 84 VFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSV 143
V ++ +P DH HG + IA EVED D +
Sbjct: 63 VLSSALNPWNKEMG------------DHLV------KHGDGVKDIAFEVEDCDYIVQKAR 104
Query: 144 AHGAKPSSPPVI-LDNLAVI--AEVQLYGDVVLRYVSYKDKANHL-DFLPGFEP---TDE 196
GAK P + D + A +Q YGD V +K N++ FLPG+E D
Sbjct: 105 ERGAKIMREPWVEQDKFGKVKFAVLQTYGDTTHTLV---EKMNYIGQFLPGYEAPAFMDP 161
Query: 197 ISSFPLDYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVV 254
+ + +DH VGN P E+ A + FH F V T S L S+V
Sbjct: 162 LLPKLPKCSLEMIDHIVGNQPDQEMVSASEWYLKNLQFHRFWSVDDTQVHTEYSSLRSIV 221
Query: 255 LANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGV 314
+AN +E + +P+NEP G K+KSQIQ Y+++N GAGVQH+AL +EDI +R +R+R
Sbjct: 222 VANYEESIKMPINEPAPG-KKKSQIQEYVDYNGGAGVQHIALKTEDIITAIRHLRER--- 277
Query: 315 GGFEFMPSPPPTYYKNLKNR--AGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVGD 372
G EF+ S P TYYK L+ + + E I EEL +LVD D++G LLQIFTKPV D
Sbjct: 278 -GLEFL-SVPSTYYKQLREKLKTAKIKVKENIDALEELKILVDYDEKGYLLQIFTKPVQD 335
Query: 373 RPTIFIEIIQRVGCMLKDEEXXXXXXXXXXXXXXXNFSELFKSIEEYEKTLGAKPVAET 431
RPT+F+E+IQR NF+ LFK+ EE + G ET
Sbjct: 336 RPTLFLEVIQR---------------HNHQGFGAGNFNSLFKAFEEEQNLRGNLTNMET 379
>pdb|1SQI|A Chain A, Structural Basis For Inhibitor Selectivity Revealed By
Crystal Structures Of Plant And Mammalian 4-
Hydroxyphenylpyruvate Dioxygenases
pdb|1SQI|B Chain B, Structural Basis For Inhibitor Selectivity Revealed By
Crystal Structures Of Plant And Mammalian 4-
Hydroxyphenylpyruvate Dioxygenases
Length = 393
Score = 196 bits (497), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 140/418 (33%), Positives = 204/418 (48%), Gaps = 53/418 (12%)
Query: 18 FVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLR 77
+ + PK +R R FH V FW +A A + +G +A L TG+ S++++
Sbjct: 4 YSNKGPKPERGRFLHFHSVTFWVGNAKQAASFYCNKMGFEPLAYKGLETGSREVVSHVIK 63
Query: 78 SGDLRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAVEVEDADV 137
G + FV + +P DH HG + IA EVED +
Sbjct: 64 QGKIVFVLCSALNPWNKEMG------------DHLV------KHGDGVKDIAFEVEDCEH 105
Query: 138 AFNTSVAHGAKPSSPPVILDNL---AVIAEVQLYGDVVLRYVSYKDKANHLD-FLPGFE- 192
+ GAK P + ++ A +Q YGD V +K N+ FLPGFE
Sbjct: 106 IVQKARERGAKIVREPWVEEDKFGKVKFAVLQTYGDTTHTLV---EKINYTGRFLPGFEA 162
Query: 193 PTDEISSFPL--DYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSES 248
PT + + P + +DH VGN P E+ A + FH F V T S
Sbjct: 163 PTYKDTLLPKLPSCNLEIIDHIVGNQPDQEMESASEWYLKNLQFHRFWSVDDTQVHTEYS 222
Query: 249 GLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREM 308
L S+V+AN +E + +P+NEP G ++KSQIQ Y+++N GAGVQH+AL +EDI T+R +
Sbjct: 223 SLRSIVVANYEESIKMPINEPAPG-RKKSQIQEYVDYNGGAGVQHIALRTEDIITTIRHL 281
Query: 309 RKRSGVGGFEFMPSPPPTYYKNLKN--RAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIF 366
R+R G EF+ + P +YY+ L+ + + E + EEL +LVD D++G LLQIF
Sbjct: 282 RER----GMEFL-AVPSSYYRLLRENLKTSKIQVKENMDVLEELKILVDYDEKGYLLQIF 336
Query: 367 TKPVGDRPTIFIEIIQRVGCMLKDEEXXXXXXXXXXXXXXXNFSELFKSIEEYEKTLG 424
TKP+ DRPT+F+E+IQR NF+ LFK+ EE + G
Sbjct: 337 TKPMQDRPTLFLEVIQR---------------HNHQGFGAGNFNSLFKAFEEEQALRG 379
>pdb|1T47|A Chain A, Structure Of Fe2-Hppd Bound To Ntbc
pdb|1T47|B Chain B, Structure Of Fe2-Hppd Bound To Ntbc
Length = 381
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 138/406 (33%), Positives = 185/406 (45%), Gaps = 45/406 (11%)
Query: 24 KSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRF 83
++D F V V F +A A +S GM +VA S G+ ASY+L +G RF
Sbjct: 14 QADPFPVKGMDAVVFAVGNAKQAAHYYSTAFGMQLVAYSGPENGSRETASYVLTNGSARF 73
Query: 84 VFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSV 143
V T+ P DH A HG +A+EV DA A ++
Sbjct: 74 VLTSVIKPATPWGHFLA---------DHVA------EHGDGVVDLAIEVPDARAAHAYAI 118
Query: 144 AHGAKPSSPPVILDN---LAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEPTDEISSF 200
HGA+ + P L + V+A + YG R+ +LPG+ I
Sbjct: 119 EHGARSVAEPYELKDEHGTVVLAAIATYGKT--RHTLVDRTGYDGPYLPGYVAAAPIVEP 176
Query: 201 PLDYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANN 258
P + +DH VGNV + V + GF EF +D+ T S L S V+A+
Sbjct: 177 PAHRTFQAIDHCVGNVELGRMNEWVGFYNKVMGFTNMKEFVGDDIATEYSALMSKVVADG 236
Query: 259 DEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFE 318
V P+NEP K+KSQI YLE GAGVQH+AL + DI T+R MR G +
Sbjct: 237 TLKVKFPINEPAL-AKKKSQIDEYLEFYGGAGVQHIALNTGDIVETVRTMR----AAGVQ 291
Query: 319 FMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVGDRPTIFI 378
F+ +P +YY L GD T + EL +L DRD+ G LLQIFTKPV DRPT+F
Sbjct: 292 FLDTPD-SYYDTLGEWVGD--TRVPVDTLRELKILADRDEDGYLLQIFTKPVQDRPTVFF 348
Query: 379 EIIQRVGCMLKDEEXXXXXXXXXXXXXXXNFSELFKSIEEYEKTLG 424
EII+R G M NF LF++IE ++ G
Sbjct: 349 EIIERHGSM---------------GFGKGNFKALFEAIEREQEKRG 379
>pdb|1CJX|A Chain A, Crystal Structure Of Pseudomonas Fluorescens Hppd
pdb|1CJX|B Chain B, Crystal Structure Of Pseudomonas Fluorescens Hppd
pdb|1CJX|C Chain C, Crystal Structure Of Pseudomonas Fluorescens Hppd
pdb|1CJX|D Chain D, Crystal Structure Of Pseudomonas Fluorescens Hppd
Length = 357
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 142/312 (45%), Gaps = 46/312 (14%)
Query: 117 FAASHGLAARSIAVEVEDADVAFNTSVAHGAKP---SSPPVILDNLAV--IAEVQLYGDV 171
FAA HG + +A V+D+ A+N ++ GA+P + P+ L+ A+ I LY
Sbjct: 69 FAAEHGPSVCGMAFRVKDSQKAYNRALELGAQPIHIDTGPMELNLPAIKGIGGAPLY--- 125
Query: 172 VLRYVSYKDKANHLDF--LPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSF 229
++ +DF L G E P+ G++ +DH NV V + +
Sbjct: 126 LIDRFGEGSSIYDIDFVYLEGVERN------PVGAGLKVIDHLTHNVYR-GRMVYWANFY 178
Query: 230 TGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGA 289
F E D+ +GL S ++ D M+ +P+NE +K QI+ +L G
Sbjct: 179 EKLFNFREARYFDIKGEYTGLTSKAMSAPDGMIRIPLNEE--SSKGAGQIEEFLMQFNGE 236
Query: 290 GVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEE 349
G+QH+A +++D+ +T ++K G FM +PP TYY+ L+ R D E + Q +
Sbjct: 237 GIQHVAFLTDDLVKTWDALKKI----GMRFMTAPPDTYYEMLEGRLPD--HGEPVDQLQA 290
Query: 350 LGVLVD----RDDQGTLLQIFTKPVGDRPTIFIEIIQRVGCMLKDEEXXXXXXXXXXXXX 405
G+L+D D+ LLQIF++ + +F E IQR G
Sbjct: 291 RGILLDGSSVEGDKRLLLQIFSETL--MGPVFFEFIQRKG---------------DDGFG 333
Query: 406 XXNFSELFKSIE 417
NF LF+SIE
Sbjct: 334 EGNFKALFESIE 345
>pdb|2R5V|A Chain A, Hydroxymandelate Synthase Crystal Structure
pdb|2R5V|B Chain B, Hydroxymandelate Synthase Crystal Structure
Length = 357
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 90/320 (28%), Positives = 132/320 (41%), Gaps = 36/320 (11%)
Query: 71 HASYLLRSGDLRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAV 130
H S LR G + V T P S D ++ +HG IA+
Sbjct: 40 HRSIALRQGQVTLVLTEPTS-------------------DRHPAAAYLQTHGDGVADIAM 80
Query: 131 EVEDADVAFNTSVAHGAKPSSPPVILDNLAVI-AEVQLYGDVVLRYVSYKDKANHLDFLP 189
D A+ +V GA+ P AV A + +GDVV + + L P
Sbjct: 81 ATSDVAAAYEAAVRAGAEAVRAPGQHSEAAVTTATIGGFGDVVHTLIQRDGTSAELP--P 138
Query: 190 GFEPTDEISSFPL-DYGIRRLDH--AVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTS 246
GF + ++++ D + +DH N +L P V Y + GF + + E +
Sbjct: 139 GFTGSMDVTNHGKGDVDLLGIDHFAICLNAGDLGPTVEYYERALGFRQIFD---EHIVVG 195
Query: 247 ESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLR 306
+NS V+ + V L + EP QI +L+ ++GAGVQH+A S D R ++
Sbjct: 196 AQAMNSTVVQSASGAVTLTLIEPDRNAD-PGQIDEFLKDHQGAGVQHIAFNSNDAVRAVK 254
Query: 307 EMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIF 366
+ +R G EF+ +P YY L R L + VL D D G L QIF
Sbjct: 255 ALSER----GVEFLKTPGA-YYDLLGERI--TLQTHSLDDLRATNVLADEDHGGQLFQIF 307
Query: 367 TKPVGDRPTIFIEIIQRVGC 386
T R TIF E+I+R G
Sbjct: 308 TASTHPRHTIFFEVIERQGA 327
>pdb|3RMU|A Chain A, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|B Chain B, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|C Chain C, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|D Chain D, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
Length = 134
Score = 37.0 bits (84), Expect = 0.023, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 20/109 (18%)
Query: 208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLAN--NDEMVL-- 263
RL+H VP+L A A+ K+ G +E V E G+ SVV N N +M L
Sbjct: 5 RLNHVAIAVPDLEKAAAFYKNILGAQ-----VSEAVPLPEHGV-SVVFVNLGNTKMELLH 58
Query: 264 -LPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKR 311
L ++ P+ G +L+ N+ G+ H+ + ++I + +++K+
Sbjct: 59 PLGLDSPIAG---------FLQKNKAGGMHHICIEVDNINAAVMDLKKK 98
>pdb|1JC5|A Chain A, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|B Chain B, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|C Chain C, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|D Chain D, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|E Chain E, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|F Chain F, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
Length = 148
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 21/112 (18%)
Query: 209 LDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEM------- 261
+DH P+ A Y + G+HE E G+ +++A ++
Sbjct: 10 IDHVAYACPDADEASKYYQETFGWHELHREE-----NPEQGVVEIMMAPAAKLTEHMTQV 64
Query: 262 -VLLPMNEPVFGTKRKSQIQTYL-EHNEGAGVQHLALVSEDIFRTLREMRKR 311
V+ P+N+ +S + +L +HN AG+ H+A +DI +R+R
Sbjct: 65 QVMAPLND-------ESTVAKWLAKHNGRAGLHHMAWRVDDIDAVSATLRER 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,050,872
Number of Sequences: 62578
Number of extensions: 489686
Number of successful extensions: 1159
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 1123
Number of HSP's gapped (non-prelim): 58
length of query: 434
length of database: 14,973,337
effective HSP length: 102
effective length of query: 332
effective length of database: 8,590,381
effective search space: 2852006492
effective search space used: 2852006492
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)