Query 013898
Match_columns 434
No_of_seqs 309 out of 2014
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 08:30:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013898.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013898hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02875 4-hydroxyphenylpyruva 100.0 4.9E-94 1.1E-98 724.4 44.5 388 33-422 1-395 (398)
2 KOG0638 4-hydroxyphenylpyruvat 100.0 2.8E-90 6.1E-95 653.6 18.1 364 20-423 5-377 (381)
3 TIGR01263 4HPPD 4-hydroxypheny 100.0 1.5E-75 3.1E-80 591.9 42.2 345 31-424 1-351 (353)
4 COG3185 4-hydroxyphenylpyruvat 100.0 1.1E-75 2.4E-80 565.6 34.7 342 27-428 17-361 (363)
5 cd07250 HPPD_C_like C-terminal 100.0 2.2E-52 4.9E-57 387.8 22.0 189 206-418 1-191 (191)
6 PF14696 Glyoxalase_5: Hydroxy 99.9 6.1E-24 1.3E-28 185.6 9.4 125 21-178 2-126 (139)
7 TIGR03211 catechol_2_3 catecho 99.9 7E-19 1.5E-23 174.2 28.9 252 30-369 2-266 (303)
8 TIGR02295 HpaD 3,4-dihydroxyph 99.8 1.8E-18 3.9E-23 170.4 27.6 246 30-371 2-259 (294)
9 PLN02300 lactoylglutathione ly 99.8 4.3E-18 9.2E-23 167.7 26.8 225 28-322 20-251 (286)
10 TIGR03213 23dbph12diox 2,3-dih 99.8 4.5E-18 9.7E-23 167.3 26.5 255 30-371 1-266 (286)
11 cd08342 HPPD_N_like N-terminal 99.8 1.8E-17 3.9E-22 145.0 17.7 136 33-193 1-136 (136)
12 PF13669 Glyoxalase_4: Glyoxal 99.5 9.5E-14 2.1E-18 116.9 9.9 97 210-323 1-97 (109)
13 cd08353 Glo_EDI_BRP_like_7 Thi 99.5 1.9E-13 4.1E-18 119.7 11.1 109 206-322 1-115 (142)
14 cd08342 HPPD_N_like N-terminal 99.5 8.4E-13 1.8E-17 115.4 14.2 98 209-323 1-98 (136)
15 cd07250 HPPD_C_like C-terminal 99.5 7.5E-13 1.6E-17 122.9 13.5 110 30-156 1-115 (191)
16 cd08353 Glo_EDI_BRP_like_7 Thi 99.4 3.2E-12 7E-17 111.9 13.8 129 30-177 1-140 (142)
17 TIGR01263 4HPPD 4-hydroxypheny 99.4 5.5E-12 1.2E-16 128.0 13.2 114 26-156 152-270 (353)
18 PLN02367 lactoylglutathione ly 99.4 1.5E-11 3.2E-16 116.5 14.4 134 207-371 74-225 (233)
19 TIGR03081 metmalonyl_epim meth 99.4 1.2E-11 2.6E-16 105.6 12.6 100 208-322 1-100 (128)
20 PF13669 Glyoxalase_4: Glyoxal 99.3 4.2E-12 9.2E-17 106.8 9.6 95 34-153 1-97 (109)
21 cd07249 MMCE Methylmalonyl-CoA 99.3 2.6E-11 5.7E-16 103.2 14.1 117 33-179 1-117 (128)
22 TIGR03081 metmalonyl_epim meth 99.3 3.5E-11 7.6E-16 102.6 14.7 100 32-152 1-100 (128)
23 TIGR03645 glyox_marine lactoyl 99.3 1.3E-11 2.8E-16 111.6 12.2 137 207-369 3-152 (162)
24 PLN03042 Lactoylglutathione ly 99.3 2.4E-11 5.2E-16 112.1 13.7 106 207-322 26-149 (185)
25 PF00903 Glyoxalase: Glyoxalas 99.3 9E-12 2E-16 105.4 7.0 128 208-365 1-128 (128)
26 cd07243 2_3_CTD_C C-terminal d 99.2 1.8E-10 4E-15 101.8 14.2 121 204-368 2-125 (143)
27 PLN02875 4-hydroxyphenylpyruva 99.2 6.1E-11 1.3E-15 120.8 12.4 110 28-153 176-295 (398)
28 PRK11478 putative lyase; Provi 99.2 1.4E-10 3.1E-15 99.4 12.6 126 205-367 3-128 (129)
29 cd07257 THT_oxygenase_C The C- 99.2 6E-11 1.3E-15 106.0 10.6 123 208-369 1-126 (153)
30 PLN02367 lactoylglutathione ly 99.2 3.2E-10 6.8E-15 107.5 14.9 128 31-178 74-222 (233)
31 PLN03042 Lactoylglutathione ly 99.2 4.2E-10 9.2E-15 103.9 14.3 129 30-178 25-174 (185)
32 PRK11478 putative lyase; Provi 99.2 3.6E-10 7.8E-15 96.9 13.0 101 28-151 2-102 (129)
33 cd07233 Glyoxalase_I Glyoxalas 99.2 2.9E-10 6.2E-15 96.0 12.0 118 209-365 1-120 (121)
34 cd08352 Glo_EDI_BRP_like_1 Thi 99.2 7.4E-10 1.6E-14 93.5 14.2 102 30-154 1-102 (125)
35 cd08360 MhqB_like_C C-terminal 99.2 4.1E-10 8.9E-15 98.0 12.4 117 207-371 2-123 (134)
36 cd09014 BphC-JF8_C_like C-term 99.2 5.6E-10 1.2E-14 101.2 13.4 124 204-369 2-128 (166)
37 cd07237 BphC1-RGP6_C_like C-te 99.1 4.9E-10 1.1E-14 100.3 11.8 123 206-369 7-132 (154)
38 cd07249 MMCE Methylmalonyl-CoA 99.1 6.1E-10 1.3E-14 94.7 11.4 101 209-323 1-101 (128)
39 cd08352 Glo_EDI_BRP_like_1 Thi 99.1 1.5E-09 3.2E-14 91.7 12.3 100 206-322 1-100 (125)
40 cd07241 Glo_EDI_BRP_like_3 Thi 99.1 1.1E-09 2.3E-14 92.7 11.2 98 208-322 1-101 (125)
41 cd08361 PpCmtC_N N-terminal do 99.1 1.9E-09 4.1E-14 92.6 12.6 117 205-371 3-122 (124)
42 cd08347 PcpA_C_like C-terminal 99.1 1E-09 2.3E-14 98.6 11.4 117 208-369 1-121 (157)
43 TIGR00068 glyox_I lactoylgluta 99.1 1.5E-09 3.2E-14 96.4 12.3 127 205-369 14-142 (150)
44 cd07256 HPCD_C_class_II C-term 99.1 1.6E-09 3.5E-14 97.6 12.6 121 207-371 2-126 (161)
45 PRK04101 fosfomycin resistance 99.1 3.8E-09 8.1E-14 92.6 14.5 115 30-177 2-118 (139)
46 cd08364 FosX FosX, a fosfomyci 99.1 2.8E-09 6E-14 92.5 13.2 122 206-371 2-125 (131)
47 TIGR03645 glyox_marine lactoyl 99.1 6.2E-09 1.3E-13 94.0 15.7 129 30-178 2-151 (162)
48 cd07265 2_3_CTD_N N-terminal d 99.1 2.3E-09 5.1E-14 91.2 12.0 113 206-368 2-119 (122)
49 cd07252 BphC1-RGP6_N_like N-te 99.0 3.9E-09 8.4E-14 89.9 13.2 115 207-369 1-118 (120)
50 cd07242 Glo_EDI_BRP_like_6 Thi 99.0 2.6E-09 5.7E-14 91.3 11.8 121 208-367 1-127 (128)
51 PF00903 Glyoxalase: Glyoxalas 99.0 1.4E-09 3.1E-14 91.9 9.9 107 32-155 1-107 (128)
52 cd07239 BphC5-RK37_C_like C-te 99.0 3.1E-09 6.7E-14 94.1 12.1 113 208-370 4-119 (144)
53 PLN02300 lactoylglutathione ly 99.0 7.1E-09 1.5E-13 102.2 15.4 131 204-372 20-152 (286)
54 cd07233 Glyoxalase_I Glyoxalas 99.0 7.6E-09 1.7E-13 87.2 13.3 97 33-155 1-101 (121)
55 PRK04101 fosfomycin resistance 99.0 4.5E-09 9.7E-14 92.1 11.6 121 206-373 2-124 (139)
56 TIGR00068 glyox_I lactoylgluta 99.0 2.3E-08 4.9E-13 88.8 16.2 125 27-178 12-141 (150)
57 cd07264 Glo_EDI_BRP_like_15 Th 99.0 9E-09 2E-13 87.4 12.8 103 33-156 1-103 (125)
58 cd07242 Glo_EDI_BRP_like_6 Thi 99.0 1.1E-08 2.3E-13 87.6 13.3 95 32-154 1-101 (128)
59 cd07244 FosA FosA, a Fosfomyci 99.0 4.7E-09 1E-13 89.4 11.0 113 208-373 1-115 (121)
60 cd07241 Glo_EDI_BRP_like_3 Thi 99.0 7.8E-09 1.7E-13 87.4 12.3 99 32-154 1-103 (125)
61 cd09013 BphC-JF8_N_like N-term 99.0 8E-09 1.7E-13 87.8 12.0 111 205-368 3-118 (121)
62 cd07246 Glo_EDI_BRP_like_8 Thi 99.0 3.4E-08 7.3E-13 83.3 15.1 115 36-175 5-119 (122)
63 cd08351 ChaP_like ChaP, an enz 98.9 7.8E-09 1.7E-13 88.3 11.1 118 207-369 3-122 (123)
64 cd07255 Glo_EDI_BRP_like_12 Th 98.9 1.2E-08 2.5E-13 86.8 12.1 116 207-368 1-119 (125)
65 cd07253 Glo_EDI_BRP_like_2 Thi 98.9 1.3E-08 2.9E-13 85.8 12.2 97 30-154 1-98 (125)
66 cd07245 Glo_EDI_BRP_like_9 Thi 98.9 8.7E-09 1.9E-13 84.9 10.7 114 209-365 1-114 (114)
67 cd07263 Glo_EDI_BRP_like_16 Th 98.9 2.4E-08 5.3E-13 83.2 13.2 116 211-365 1-117 (119)
68 KOG2944 Glyoxalase [Carbohydra 98.9 9.3E-09 2E-13 90.2 10.6 127 206-368 40-168 (170)
69 cd08364 FosX FosX, a fosfomyci 98.9 3.8E-08 8.3E-13 85.4 14.5 91 30-150 2-94 (131)
70 PRK10291 glyoxalase I; Provisi 98.9 1.6E-08 3.6E-13 87.0 12.0 91 213-322 1-93 (129)
71 cd07253 Glo_EDI_BRP_like_2 Thi 98.9 2.1E-08 4.6E-13 84.5 12.5 123 206-367 1-124 (125)
72 cd08346 PcpA_N_like N-terminal 98.9 2.4E-08 5.3E-13 84.4 12.3 120 208-365 1-125 (126)
73 cd07267 THT_Oxygenase_N N-term 98.9 3.4E-08 7.3E-13 83.1 13.0 111 206-369 1-111 (113)
74 cd08363 FosB FosB, a fosfomyci 98.9 6.7E-09 1.4E-13 90.2 8.8 117 209-372 1-119 (131)
75 cd07263 Glo_EDI_BRP_like_16 Th 98.9 3.9E-08 8.6E-13 82.0 12.8 93 35-153 1-96 (119)
76 KOG2943 Predicted glyoxalase [ 98.9 3.9E-08 8.5E-13 91.6 13.7 214 30-321 15-239 (299)
77 cd08359 Glo_EDI_BRP_like_22 Th 98.9 5.2E-08 1.1E-12 82.1 13.5 114 35-176 4-118 (119)
78 cd07258 PpCmtC_C C-terminal do 98.9 2E-08 4.3E-13 88.7 11.1 110 210-369 1-115 (141)
79 cd07243 2_3_CTD_C C-terminal d 98.9 7.5E-08 1.6E-12 85.1 14.8 94 29-154 3-100 (143)
80 cd08363 FosB FosB, a fosfomyci 98.9 3.9E-08 8.5E-13 85.3 12.6 88 33-153 1-90 (131)
81 cd09013 BphC-JF8_N_like N-term 98.9 7.1E-08 1.5E-12 81.9 13.7 83 28-150 2-91 (121)
82 cd07247 SgaA_N_like N-terminal 98.8 7E-08 1.5E-12 80.7 13.4 92 33-156 1-93 (114)
83 cd07240 ED_TypeI_classII_N N-t 98.8 3E-08 6.5E-13 83.0 11.0 110 207-368 1-114 (117)
84 cd07266 HPCD_N_class_II N-term 98.8 3.5E-08 7.7E-13 83.5 11.3 112 206-368 2-118 (121)
85 cd08343 ED_TypeI_classII_C C-t 98.8 8E-08 1.7E-12 83.0 13.6 116 210-370 1-119 (131)
86 cd08347 PcpA_C_like C-terminal 98.8 1E-07 2.2E-12 85.7 14.6 113 32-178 1-120 (157)
87 cd06587 Glo_EDI_BRP_like This 98.8 9.6E-08 2.1E-12 77.6 13.1 105 35-178 1-105 (112)
88 cd08348 BphC2-C3-RGP6_C_like T 98.8 6.4E-08 1.4E-12 83.6 12.3 117 208-369 1-121 (134)
89 cd08355 Glo_EDI_BRP_like_14 Th 98.8 1.6E-07 3.4E-12 79.7 14.6 115 37-174 4-118 (122)
90 cd08346 PcpA_N_like N-terminal 98.8 1.1E-07 2.5E-12 80.2 13.4 96 32-151 1-103 (126)
91 PRK06724 hypothetical protein; 98.8 6.5E-08 1.4E-12 84.0 12.0 114 206-369 5-124 (128)
92 cd07245 Glo_EDI_BRP_like_9 Thi 98.8 6E-08 1.3E-12 79.8 11.3 106 33-178 1-107 (114)
93 cd09014 BphC-JF8_C_like C-term 98.8 1.8E-07 3.9E-12 84.8 15.3 120 28-178 2-127 (166)
94 cd08362 BphC5-RrK37_N_like N-t 98.8 4.2E-08 9.1E-13 82.7 10.5 113 206-368 1-117 (120)
95 COG2514 Predicted ring-cleavag 98.8 1.5E-06 3.2E-11 83.2 21.9 217 30-300 8-242 (265)
96 cd07257 THT_oxygenase_C The C- 98.8 7.3E-08 1.6E-12 86.1 12.4 120 32-177 1-124 (153)
97 cd08344 MhqB_like_N N-terminal 98.8 1.4E-07 3.1E-12 79.1 13.1 106 208-368 2-109 (112)
98 TIGR03213 23dbph12diox 2,3-dih 98.8 5.7E-08 1.2E-12 95.5 12.2 114 206-367 1-117 (286)
99 PF13468 Glyoxalase_3: Glyoxal 98.8 4.7E-08 1E-12 89.3 10.8 171 33-230 1-175 (175)
100 cd08345 Fosfomycin_RP Fosfomyc 98.8 1.2E-07 2.7E-12 78.9 12.6 83 35-152 1-85 (113)
101 cd07240 ED_TypeI_classII_N N-t 98.8 1.3E-07 2.8E-12 79.1 12.7 84 31-154 1-90 (117)
102 cd07244 FosA FosA, a Fosfomyci 98.8 1.8E-07 3.9E-12 79.6 13.4 86 32-153 1-88 (121)
103 cd08360 MhqB_like_C C-terminal 98.8 2.9E-07 6.2E-12 80.0 14.9 109 31-176 2-118 (134)
104 PRK10291 glyoxalase I; Provisi 98.8 3.3E-07 7.1E-12 78.9 14.8 114 38-178 2-120 (129)
105 PRK06724 hypothetical protein; 98.8 1.6E-07 3.6E-12 81.5 12.9 87 30-155 5-97 (128)
106 cd08362 BphC5-RrK37_N_like N-t 98.7 1.9E-07 4E-12 78.8 12.7 86 30-153 1-90 (120)
107 cd07265 2_3_CTD_N N-terminal d 98.7 1.9E-07 4E-12 79.4 12.8 85 30-153 2-93 (122)
108 cd08359 Glo_EDI_BRP_like_22 Th 98.7 1E-07 2.2E-12 80.3 11.1 115 211-366 4-118 (119)
109 cd08351 ChaP_like ChaP, an enz 98.7 2.8E-07 6.1E-12 78.6 13.9 87 30-154 2-90 (123)
110 cd07267 THT_Oxygenase_N N-term 98.7 2.7E-07 5.8E-12 77.7 13.3 84 30-152 1-85 (113)
111 COG3185 4-hydroxyphenylpyruvat 98.7 6.1E-08 1.3E-12 95.4 10.5 116 22-156 157-277 (363)
112 cd08358 Glo_EDI_BRP_like_21 Th 98.7 4.2E-07 9.1E-12 78.9 14.5 115 208-365 2-124 (127)
113 cd08343 ED_TypeI_classII_C C-t 98.7 3.8E-07 8.3E-12 78.8 14.4 111 34-178 1-117 (131)
114 cd09011 Glo_EDI_BRP_like_23 Th 98.7 2.2E-07 4.8E-12 78.8 12.0 108 31-178 1-109 (120)
115 cd07254 Glo_EDI_BRP_like_20 Th 98.7 2.2E-07 4.9E-12 78.5 12.0 111 211-368 4-117 (120)
116 cd08345 Fosfomycin_RP Fosfomyc 98.7 1.7E-07 3.7E-12 78.1 10.8 110 211-369 1-112 (113)
117 cd08361 PpCmtC_N N-terminal do 98.7 3.2E-07 7E-12 78.7 12.5 84 29-153 3-91 (124)
118 cd08349 BLMA_like Bleomycin bi 98.7 6.4E-07 1.4E-11 74.2 14.0 86 37-154 3-89 (112)
119 cd07237 BphC1-RGP6_C_like C-te 98.7 5.7E-07 1.2E-11 80.4 14.5 94 30-154 7-106 (154)
120 cd07256 HPCD_C_class_II C-term 98.7 7.1E-07 1.5E-11 80.4 15.0 113 31-177 2-122 (161)
121 cd07255 Glo_EDI_BRP_like_12 Th 98.7 4.4E-07 9.6E-12 77.0 12.9 87 31-149 1-92 (125)
122 cd06587 Glo_EDI_BRP_like This 98.7 2.5E-07 5.4E-12 75.1 10.6 89 211-322 1-89 (112)
123 cd07247 SgaA_N_like N-terminal 98.7 3.7E-07 8.1E-12 76.3 11.7 113 209-366 1-113 (114)
124 cd07235 MRD Mitomycin C resist 98.6 3.4E-07 7.4E-12 77.6 11.2 97 33-155 1-100 (122)
125 cd08354 Glo_EDI_BRP_like_13 Th 98.6 2.7E-07 6E-12 77.7 10.6 120 209-368 1-122 (122)
126 cd08358 Glo_EDI_BRP_like_21 Th 98.6 1.3E-06 2.8E-11 75.8 14.6 112 32-177 2-126 (127)
127 cd07262 Glo_EDI_BRP_like_19 Th 98.6 1.1E-06 2.4E-11 74.6 13.6 90 33-155 1-98 (123)
128 TIGR02295 HpaD 3,4-dihydroxyph 98.6 4.1E-07 8.9E-12 89.6 12.5 108 206-367 2-114 (294)
129 cd07239 BphC5-RK37_C_like C-te 98.6 1.2E-06 2.6E-11 77.5 14.2 109 31-178 3-117 (144)
130 cd07266 HPCD_N_class_II N-term 98.6 9.2E-07 2E-11 74.8 12.8 84 30-153 2-92 (121)
131 cd07238 Glo_EDI_BRP_like_5 Thi 98.6 6.6E-07 1.4E-11 74.7 11.6 107 212-368 4-111 (112)
132 cd08354 Glo_EDI_BRP_like_13 Th 98.6 6.6E-07 1.4E-11 75.4 11.7 93 34-153 2-98 (122)
133 cd08350 BLMT_like BLMT, a bleo 98.6 1.3E-06 2.9E-11 74.0 13.6 78 36-149 6-83 (120)
134 PF12681 Glyoxalase_2: Glyoxal 98.6 6.4E-07 1.4E-11 73.9 11.2 84 38-156 1-88 (108)
135 cd07252 BphC1-RGP6_N_like N-te 98.6 9E-07 2E-11 75.2 12.3 83 32-153 2-89 (120)
136 cd07254 Glo_EDI_BRP_like_20 Th 98.6 1.4E-06 3.1E-11 73.6 13.2 108 35-177 4-116 (120)
137 cd09012 Glo_EDI_BRP_like_24 Th 98.6 1.6E-06 3.4E-11 73.9 13.6 100 33-156 1-103 (124)
138 cd07264 Glo_EDI_BRP_like_15 Th 98.6 8.4E-07 1.8E-11 75.2 11.7 122 209-367 1-124 (125)
139 cd07262 Glo_EDI_BRP_like_19 Th 98.5 1.1E-06 2.4E-11 74.5 11.9 116 209-366 1-122 (123)
140 cd08348 BphC2-C3-RGP6_C_like T 98.5 3.3E-06 7.1E-11 72.8 15.0 113 32-177 1-119 (134)
141 TIGR03211 catechol_2_3 catecho 98.5 1.6E-06 3.5E-11 85.8 14.8 117 28-176 141-263 (303)
142 cd08355 Glo_EDI_BRP_like_14 Th 98.5 1.3E-06 2.8E-11 74.1 12.1 118 213-367 4-121 (122)
143 cd08357 Glo_EDI_BRP_like_18 Th 98.5 5.9E-07 1.3E-11 76.0 8.8 120 211-366 2-123 (125)
144 cd08356 Glo_EDI_BRP_like_17 Th 98.5 2.3E-06 5E-11 72.2 12.1 101 37-181 6-106 (113)
145 cd07238 Glo_EDI_BRP_like_5 Thi 98.5 2.5E-06 5.5E-11 71.1 12.3 104 36-177 4-110 (112)
146 cd07258 PpCmtC_C C-terminal do 98.5 2E-06 4.4E-11 75.8 11.8 106 34-176 1-112 (141)
147 cd07246 Glo_EDI_BRP_like_8 Thi 98.4 5.4E-06 1.2E-10 69.7 13.4 116 213-367 6-121 (122)
148 cd09011 Glo_EDI_BRP_like_23 Th 98.4 1E-06 2.3E-11 74.6 9.0 116 208-367 2-118 (120)
149 cd08344 MhqB_like_N N-terminal 98.4 4.6E-06 1E-10 69.9 12.7 82 31-153 1-86 (112)
150 KOG0638 4-hydroxyphenylpyruvat 98.4 5.3E-07 1.1E-11 87.3 7.3 106 204-321 13-118 (381)
151 cd08357 Glo_EDI_BRP_like_18 Th 98.4 1.9E-06 4.2E-11 72.8 10.0 94 35-154 2-97 (125)
152 cd07235 MRD Mitomycin C resist 98.4 2E-06 4.4E-11 72.7 10.1 116 209-366 1-121 (122)
153 cd09012 Glo_EDI_BRP_like_24 Th 98.3 7E-06 1.5E-10 69.9 11.1 115 210-367 2-123 (124)
154 cd07261 Glo_EDI_BRP_like_11 Th 98.2 1.7E-05 3.7E-10 66.2 11.9 90 36-156 2-94 (114)
155 cd07261 Glo_EDI_BRP_like_11 Th 98.2 1.8E-05 3.8E-10 66.1 11.9 110 212-367 2-114 (114)
156 cd08356 Glo_EDI_BRP_like_17 Th 98.2 7.8E-06 1.7E-10 68.9 9.4 102 214-366 7-112 (113)
157 cd07251 Glo_EDI_BRP_like_10 Th 98.2 1.9E-05 4.2E-10 66.1 10.5 107 36-178 2-111 (121)
158 PF12681 Glyoxalase_2: Glyoxal 98.1 1.8E-05 3.9E-10 65.1 9.4 108 214-366 1-108 (108)
159 cd08349 BLMA_like Bleomycin bi 98.1 4.2E-05 9.1E-10 63.1 11.6 81 213-319 3-83 (112)
160 PF14696 Glyoxalase_5: Hydroxy 98.1 7.3E-06 1.6E-10 72.0 6.4 98 203-322 4-101 (139)
161 cd08350 BLMT_like BLMT, a bleo 98.1 3.6E-05 7.9E-10 65.1 10.6 79 212-320 6-84 (120)
162 cd07251 Glo_EDI_BRP_like_10 Th 98.0 1.3E-05 2.9E-10 67.1 6.9 116 212-367 2-120 (121)
163 PF13468 Glyoxalase_3: Glyoxal 97.9 2.1E-05 4.5E-10 71.8 6.3 98 209-318 1-101 (175)
164 KOG2944 Glyoxalase [Carbohydra 97.8 0.00011 2.4E-09 64.8 9.2 103 30-154 40-145 (170)
165 cd06588 PhnB_like Escherichia 97.8 0.00056 1.2E-08 58.9 13.4 105 37-178 4-120 (128)
166 COG2764 PhnB Uncharacterized p 97.8 0.00051 1.1E-08 60.2 12.2 107 37-178 5-121 (136)
167 COG0346 GloA Lactoylglutathion 97.6 0.00012 2.5E-09 61.0 5.2 32 208-239 2-33 (138)
168 COG3324 Predicted enzyme relat 97.4 0.0041 9E-08 53.7 12.2 93 31-156 8-103 (127)
169 COG2514 Predicted ring-cleavag 97.3 0.0026 5.6E-08 61.2 11.4 90 206-320 8-100 (265)
170 KOG2943 Predicted glyoxalase [ 97.1 0.00098 2.1E-08 62.7 6.0 119 205-336 14-145 (299)
171 COG3607 Predicted lactoylgluta 97.0 0.01 2.2E-07 50.6 10.7 116 32-177 3-126 (133)
172 COG3565 Predicted dioxygenase 96.7 0.0069 1.5E-07 50.8 7.5 119 209-365 5-126 (138)
173 COG3324 Predicted enzyme relat 96.5 0.031 6.8E-07 48.3 10.1 91 207-321 8-98 (127)
174 PRK10148 hypothetical protein; 96.4 0.14 3E-06 45.5 14.1 104 37-178 6-131 (147)
175 cd06588 PhnB_like Escherichia 96.1 0.13 2.8E-06 44.0 12.1 90 214-321 5-103 (128)
176 COG0346 GloA Lactoylglutathion 95.9 0.01 2.2E-07 49.1 4.2 33 31-63 1-33 (138)
177 PRK01037 trmD tRNA (guanine-N( 95.7 0.091 2E-06 52.8 10.7 84 33-155 248-334 (357)
178 PF14506 CppA_N: CppA N-termin 95.4 0.34 7.4E-06 41.3 11.4 83 35-148 3-86 (125)
179 PF07063 DUF1338: Domain of un 94.9 0.026 5.7E-07 56.0 3.9 107 276-415 171-300 (302)
180 COG3565 Predicted dioxygenase 94.7 0.4 8.6E-06 40.5 9.8 96 33-155 5-102 (138)
181 PF14506 CppA_N: CppA N-termin 92.1 1.1 2.5E-05 38.1 8.5 80 211-311 3-83 (125)
182 COG2764 PhnB Uncharacterized p 90.5 3.3 7.1E-05 36.4 10.1 92 214-321 6-104 (136)
183 PF06983 3-dmu-9_3-mt: 3-demet 89.2 4.6 0.0001 34.3 9.9 84 35-147 6-97 (116)
184 COG3607 Predicted lactoylgluta 73.4 29 0.00064 30.0 8.6 88 212-321 7-101 (133)
185 PRK10148 hypothetical protein; 64.1 1E+02 0.0022 27.1 11.2 24 214-237 7-31 (147)
186 PRK01037 trmD tRNA (guanine-N( 58.7 8.6 0.00019 39.0 3.0 27 208-234 247-273 (357)
187 COG1437 CyaB Adenylate cyclase 55.4 1.6E+02 0.0035 27.1 10.4 48 32-87 77-124 (178)
188 PF08004 DUF1699: Protein of u 51.0 28 0.00062 30.0 4.5 59 288-360 18-78 (131)
189 PF14507 CppA_C: CppA C-termin 43.9 9.7 0.00021 31.6 0.6 23 208-231 5-27 (101)
190 PF06983 3-dmu-9_3-mt: 3-demet 42.3 1.7E+02 0.0037 24.5 8.1 19 217-235 11-29 (116)
191 PF15067 FAM124: FAM124 family 32.8 2.6E+02 0.0056 26.9 8.2 47 35-87 131-180 (236)
192 PF07063 DUF1338: Domain of un 31.0 73 0.0016 31.8 4.6 39 112-150 172-216 (302)
193 cd04882 ACT_Bt0572_2 C-termina 27.9 1.1E+02 0.0023 21.9 4.1 28 289-320 38-65 (65)
194 PRK14584 hmsS hemin storage sy 26.8 2.1E+02 0.0046 25.6 6.3 45 325-371 98-143 (153)
195 COG0036 Rpe Pentose-5-phosphat 25.6 1.9E+02 0.004 27.6 6.0 74 278-355 76-165 (220)
196 TIGR00318 cyaB adenylyl cyclas 24.7 3.4E+02 0.0075 24.4 7.6 47 33-87 77-123 (174)
197 PF06185 YecM: YecM protein; 23.8 2.9E+02 0.0062 25.6 6.7 30 207-236 33-62 (185)
198 cd04880 ACT_AAAH-PDT-like ACT 22.4 2.3E+02 0.005 21.2 5.1 48 343-418 16-66 (75)
199 COG4747 ACT domain-containing 20.9 86 0.0019 26.9 2.5 25 293-321 111-135 (142)
No 1
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=100.00 E-value=4.9e-94 Score=724.36 Aligned_cols=388 Identities=77% Similarity=1.228 Sum_probs=340.3
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChh
Q 013898 33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHA 112 (434)
Q Consensus 33 l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~ 112 (434)
+|||+|||+|+++++.||+..|||+.+++.+++++++..+++++|||+|+|+|++|+.+......+...++.+.+.++.+
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g~i~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSGDLVFLFTAPYSPKIGAGDDDPASTAPHPSFSSD 80 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeCCEEEEEeCCCCCccccccccccccccccccCcH
Confidence 69999999999999999999999999999999999988999999999999999999754210000001122344555567
Q ss_pred HHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccC-----ceEEEEEEecCCeEEEEeeccCcCCCCC-
Q 013898 113 ACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDN-----LAVIAEVQLYGDVVLRYVSYKDKANHLD- 186 (434)
Q Consensus 113 ~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~-----~~~~~~i~~~Gg~~~~fvd~~~~~~~g~- 186 (434)
++++|+++||+|||+|||+|+|+++++++|+++|++++.+|+...+ .+.+|+|++||+++|+||++ ..|.+.
T Consensus 81 ~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr--~~~~~~~ 158 (398)
T PLN02875 81 AARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSY--KGFDGAK 158 (398)
T ss_pred HHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEcc--CCCCCCc
Confidence 8999999999999999999999999999999999999999887644 37999999999999999996 346666
Q ss_pred CCCCCccCCCCCCCCcccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEe
Q 013898 187 FLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPM 266 (434)
Q Consensus 187 ~~p~f~~~~~~~~~~~~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L 266 (434)
|+|+|.+.+.....+.+.++++||||+++|++|++|+.||+++|||+..++++.+++++.++|++|++|.++++.++|+|
T Consensus 159 f~p~f~~~~~~~~~~~~~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~g~v~ipL 238 (398)
T PLN02875 159 FLPGYEPVESSSSFPLDYGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNNEMVLLPL 238 (398)
T ss_pred cCCCcccccccccCCCCCCcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCCCcEEEEe
Confidence 99999765432111234569999999999999999999999999999999887777777889999999999999999999
Q ss_pred cccCCCCCCCchHHHHHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHH
Q 013898 267 NEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQ 346 (434)
Q Consensus 267 ~e~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~ 346 (434)
|+|..+++++|||++||++|+|+|||||||.|+||.+++++|++++..+|++||++||++||++|.+|++.++.+++|++
T Consensus 239 nEP~~~~~~~SqI~eFL~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~Pp~~YYd~L~~R~~~~l~~e~~~~ 318 (398)
T PLN02875 239 NEPTFGTKRKSQIQTYLEHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPPPPTYYKNLKKRVGDVLTEEQIKE 318 (398)
T ss_pred ccCCCCCCCcChHHHHHHhcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCChHHHHHHHHHHhccCCChhhHHH
Confidence 99975334689999999999999999999999999999999999633349999998768999999999975578999999
Q ss_pred HHhcCeEEecCCCceEEEEEccccCCCCCeEEEEEEeeccccccccCc-ccccCCCCCcCCccHHHHHHHHHHHHHH
Q 013898 347 CEELGVLVDRDDQGTLLQIFTKPVGDRPTIFIEIIQRVGCMLKDEEGK-TYQKGGCGGFGKGNFSELFKSIEEYEKT 422 (434)
Q Consensus 347 l~~~~iL~D~d~~g~llqifT~~~~~r~~~FfEiIqR~g~~~~~~~~~-~~~~~~~~GFG~gN~~aLf~aie~~~~~ 422 (434)
|++++||||+|++||||||||+|+++|||||||||||+||||+|++|| +.++.|++|||+|||||||||||+++++
T Consensus 319 L~~~~ILvD~d~~G~LLQIFTkp~~~rpt~FfEiIQR~g~~~~~~~~~~~~~~~g~~GFG~GNfkALFeaiE~~~q~ 395 (398)
T PLN02875 319 CEELGILVDKDDQGVLLQIFTKPVGDRPTLFLEIIQRIGCMEKDEEGKEYEQAGGCGGFGKGNFSELFKSIEEYEKT 395 (398)
T ss_pred HHHcCEEEecCCCceEEEEeccccCCCCceEEEEEEecCccccccccccccccccCCCcCcccHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999 8899999999999999999999999544
No 2
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-90 Score=653.60 Aligned_cols=364 Identities=45% Similarity=0.715 Sum_probs=338.2
Q ss_pred ccCCCCCCCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCccccc
Q 013898 20 RQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADA 99 (434)
Q Consensus 20 ~~~~~~~~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~ 99 (434)
++|++++..++.++|||+|+|+|++++++||+..|||++.+++++|||++..+++++|||++.|++++++++..
T Consensus 5 ~k~~k~~~g~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g~~vFv~~s~~~p~~------ 78 (381)
T KOG0638|consen 5 DKGAKPEAGKFLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQGKIVFVFNSAYNPDN------ 78 (381)
T ss_pred cCCCCccccceeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcCCEEEEEecCCCCCc------
Confidence 88999999999999999999999999999999999999999999999998899999999999999999987652
Q ss_pred CCCCCCCCCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCc---eEEEEEEecCCeEEEEe
Q 013898 100 GNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNL---AVIAEVQLYGDVVLRYV 176 (434)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~---~~~~~i~~~Gg~~~~fv 176 (434)
+...+++-+||+||.+|||+|+|++++++.++++||+++.+|+...+. +++++++.+|++.|+++
T Consensus 79 ------------~~~G~~l~~HgdgvkdvafeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlv 146 (381)
T KOG0638|consen 79 ------------SEYGDHLVKHGDGVKDVAFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLV 146 (381)
T ss_pred ------------hhhhhhhhhcccchhceEEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEecccchhhhhh
Confidence 234578899999999999999999999999999999999999876554 78999999999999999
Q ss_pred eccCcCCCCCCCCCCccCCCCCCCC--cccceeeeeeeeEecC--CHHHHHHHHHHhhCCeeeeeeecccCcccccCceE
Q 013898 177 SYKDKANHLDFLPGFEPTDEISSFP--LDYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNS 252 (434)
Q Consensus 177 d~~~~~~~g~~~p~f~~~~~~~~~~--~~~~l~~iDHv~i~V~--dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s 252 (434)
++ ..|.|.|+|+|++++.....+ ...++.+|||++.|+| .|+.++.||.++|||++.|+++..++++++|+++|
T Consensus 147 Er--~~y~g~FLPGF~~v~~~~~fp~l~~~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs 224 (381)
T KOG0638|consen 147 ER--KGYKGPFLPGFEPVSSDALFPKLPKGGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRS 224 (381)
T ss_pred hh--ccccccCCCCcccCccccccCCCCccceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHHHHH
Confidence 97 579999999999987532121 2368999999999999 69999999999999999999998888899999999
Q ss_pred EEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHh
Q 013898 253 VVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLK 332 (434)
Q Consensus 253 ~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~ 332 (434)
+++.+.++.|+++||||.+|...+|||++|+++|+|+||||||+.|+||.++++.||+| |.+||.+ |.+||++|+
T Consensus 225 ~vlan~~esi~mpinEp~~G~k~ksQIqeyv~y~gG~GvQHiaL~tedIi~Ai~~lr~r----G~eFLs~-Ps~YYqnl~ 299 (381)
T KOG0638|consen 225 IVLANYEESIKMPINEPAPGKKKKSQIQEYVEYHGGAGVQHIALNTEDIIEAIRGLRAR----GGEFLSP-PSTYYQNLK 299 (381)
T ss_pred HHHhcCCccEEEeccCCCCCCccHHHHHHHHHhcCCCceeeeeecchHHHHHHHHHHhc----CCccccC-CHHHHHhHH
Confidence 99999999999999999998767799999999999999999999999999999999999 9999975 699999999
Q ss_pred hhcC--CCCChhHHHHHHhcCeEEecCCCceEEEEEccccCCCCCeEEEEEEeeccccccccCcccccCCCCCcCCccHH
Q 013898 333 NRAG--DVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFS 410 (434)
Q Consensus 333 ~R~~--~~l~~~~~~~l~~~~iL~D~d~~g~llqifT~~~~~r~~~FfEiIqR~g~~~~~~~~~~~~~~~~~GFG~gN~~ 410 (434)
+|+. ....+++++.|+++|||+|+|++||||||||||++||||||+|||||.|+ +|||+|||+
T Consensus 300 erl~~~~~~vked~~~l~el~ILvD~De~gyLLQIFTKplqdrpTlFlEiIQR~n~---------------~GFGaGNfk 364 (381)
T KOG0638|consen 300 ERLSTSIRKVKEDIKLLEELGILVDFDENGYLLQIFTKPLQDRPTLFLEIIQRQNH---------------EGFGAGNFK 364 (381)
T ss_pred HHhhhhhhhhhccHHHHHHcCeEEecCCCcEEeeeeccccCCCchHHHHHHHHhcc---------------cccCcccHH
Confidence 9998 77899999999999999999999999999999999999999999999998 999999999
Q ss_pred HHHHHHHHHHHHh
Q 013898 411 ELFKSIEEYEKTL 423 (434)
Q Consensus 411 aLf~aie~~~~~~ 423 (434)
|||+|||++|..-
T Consensus 365 aLf~siEeEQ~~r 377 (381)
T KOG0638|consen 365 ALFKSIEEEQTKR 377 (381)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988653
No 3
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=100.00 E-value=1.5e-75 Score=591.89 Aligned_cols=345 Identities=43% Similarity=0.709 Sum_probs=297.0
Q ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCC
Q 013898 31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFD 110 (434)
Q Consensus 31 ~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~ 110 (434)
++++||+|+|+|++++++||++.|||+++++.. +.....++++++|+++|+|++|..+.
T Consensus 1 ~~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~---~~~~~~~~~~~~G~~~l~L~~~~~~~------------------ 59 (353)
T TIGR01263 1 DGFDFVEFYVGDAKQAAYYYFTRFGFEKVAKET---GHREKASHVLRQGQINFVLTAPYSSD------------------ 59 (353)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCcEEEEee---cCCceeEEEEEeCCEEEEEecCCCCC------------------
Confidence 479999999999999999999999999998732 22234667889999999999875432
Q ss_pred hhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCcccc-CceEEEEEEecCCeEEEEeeccCcCCCCCCCC
Q 013898 111 HAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILD-NLAVIAEVQLYGDVVLRYVSYKDKANHLDFLP 189 (434)
Q Consensus 111 ~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~-~~~~~~~i~~~Gg~~~~fvd~~~~~~~g~~~p 189 (434)
+.+++|+.+||+|+++|||+|+|+++++++++++|++++.+|+..+ +++.+|+|+++|++.|+||++ ..|.+.++|
T Consensus 60 -s~~~~~~~~hg~gv~~iaf~V~Dv~~a~~~l~~~Ga~~v~~p~~~~~g~~~~~~i~~~g~~~~~~i~~--~~~~~~~~~ 136 (353)
T TIGR01263 60 -SPAADFAAKHGDGVKDVAFRVDDAAAAFEAAVERGAEPVQAPVELDEGAVTLATIKGIGDVVHTLVDR--GGYKGSFYP 136 (353)
T ss_pred -chHHHHHHhCCCceEEEEEEECCHHHHHHHHHHCCCEeccCCccCCCCeEEEEEEECcCCCEEEEEcC--CCCCCCCCC
Confidence 4578899999999999999999999999999999999998876531 468899999999999999996 345556676
Q ss_pred CCccCC-CC--CCCCcccceeeeeeeeEecC--CHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEE
Q 013898 190 GFEPTD-EI--SSFPLDYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLL 264 (434)
Q Consensus 190 ~f~~~~-~~--~~~~~~~~l~~iDHv~i~V~--dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i 264 (434)
++.... .. .....++.+++||||+++|+ ||++|+.||+++|||++.++++ +.+..+++.|+++.++++.++|
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~---~~~~~~~~~s~~~~~~~g~~~i 213 (353)
T TIGR01263 137 GFFESLLDAALHEPPPGVGLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFD---IKTEYSALNSIVMASPDGKVKI 213 (353)
T ss_pred CccccccccccccCCCCCCeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEE---eccCCccEEEEEEECCCCcEEE
Confidence 654221 11 01123467999999999999 9999999999999999988764 3334567889999988889999
Q ss_pred EecccCCCCCCCchHHHHHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHH
Q 013898 265 PMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQI 344 (434)
Q Consensus 265 ~L~e~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~ 344 (434)
+|++|... ..++++++|++.++|+|+|||||.|+||++++++|+++ |++|+.+ |.+||++|.+|++. +.+++|
T Consensus 214 ~L~ep~~~-~~~s~i~~fl~~~~g~Gv~HiAf~vdDi~~~~~~l~~~----Gv~~l~~-P~~yY~~l~~r~~~-~~~~~~ 286 (353)
T TIGR01263 214 PLNEPASG-KDKSQIEEFLEFYNGAGVQHIALNTDDIVRTVRALRAR----GVEFLDT-PDTYYDLLGERLGG-HVKEDL 286 (353)
T ss_pred EEeccCCC-CCCCHHHHHHHHcCCCCccEEEEEcCCHHHHHHHHHHc----CCccCcC-CHHHHHHHHHHhcc-cccchH
Confidence 99998532 35799999999999999999999999999999999999 9999985 69999999999974 568899
Q ss_pred HHHHhcCeEEecCCCceEEEEEccccCCCCCeEEEEEEeeccccccccCcccccCCCCCcCCccHHHHHHHHHHHHHHhC
Q 013898 345 KQCEELGVLVDRDDQGTLLQIFTKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEYEKTLG 424 (434)
Q Consensus 345 ~~l~~~~iL~D~d~~g~llqifT~~~~~r~~~FfEiIqR~g~~~~~~~~~~~~~~~~~GFG~gN~~aLf~aie~~~~~~~ 424 (434)
++|++++||||+|++||||||||+|+++|||||||||||+|+ +|||+|||||||||||++|+.-+
T Consensus 287 ~~l~~~~iL~D~d~~g~llqift~~~~~~~~~FfEiiqR~~~---------------~gfG~gN~~alf~a~e~~q~~r~ 351 (353)
T TIGR01263 287 DTLRELNILIDGDEDGYLLQIFTKPLQDRGTLFFEIIQRKGA---------------GGFGEGNFKALFEAIEREQERRG 351 (353)
T ss_pred HHHHHCCEEEecCCCceEEEEeccCCCCCCCeEEEEEEEcCC---------------CccchhhHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999997 99999999999999999997654
No 4
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=100.00 E-value=1.1e-75 Score=565.59 Aligned_cols=342 Identities=32% Similarity=0.492 Sum_probs=300.7
Q ss_pred CCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCC
Q 013898 27 RFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASL 106 (434)
Q Consensus 27 ~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~ 106 (434)
|+...+++||+|+|++++++..-|...|||+.++++. .+++.+||||+|+|+||+..
T Consensus 17 P~~~~GfeFvEf~~~d~~~~l~~l~~~lGF~~~~~Hr------sk~v~l~rQGdinlvvn~~~----------------- 73 (363)
T COG3185 17 PEGTDGFEFVEFAVPDPQEALGALLGQLGFTAVAKHR------SKAVTLYRQGDINLVVNAEP----------------- 73 (363)
T ss_pred CCCCCceeEEEEecCCHHHHHHHHHHHhCcccccccc------ccceeEEEeCCEEEEEcCCC-----------------
Confidence 3359999999999999987777777899999998753 36889999999999999742
Q ss_pred CCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeeccCcCCCCC
Q 013898 107 PTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKANHLD 186 (434)
Q Consensus 107 ~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~~~~~~~g~ 186 (434)
.|++++|+..||+++|+|||+|+|+..+++|+.+.|++.+..+.+. +++.+|+|+++||++++|+|+..+ ...
T Consensus 74 ----~s~a~~f~~~Hgps~~a~a~~V~DA~~A~a~A~a~gA~~~~~~~g~-~e~~ipai~giggsllyfvd~~~~--~si 146 (363)
T COG3185 74 ----DSFAAEFLDKHGPSACAMAFRVDDAEQALARALALGARTIDTEIGA-GEVDIPAIRGIGGSLLYFVDRYGG--RSI 146 (363)
T ss_pred ----cchhhHHHHhcCCchheeEEeeCCHHHHHHHHHHcCCccccCCCCC-ccccccceeccCCcEEEEeccCCC--Ccc
Confidence 2578999999999999999999999999999999999887776554 688999999999999999997311 235
Q ss_pred CCCCCccCCCCCCCCcccceeeeeeeeEecC--CHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEE
Q 013898 187 FLPGFEPTDEISSFPLDYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLL 264 (434)
Q Consensus 187 ~~p~f~~~~~~~~~~~~~~l~~iDHv~i~V~--dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i 264 (434)
|..+|.+.... ......++..|||++.+|+ .|+.|+.||+++|||+...+++ +.+..++++|++|.+++|.|+|
T Consensus 147 yd~~f~~~~~~-~~~~~~g~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fd---i~~p~tgl~Sram~Sp~G~vrl 222 (363)
T COG3185 147 YDVEFEPNGAQ-GASGGVGLTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFD---IPGPITGLRSRAMVSPCGKVRL 222 (363)
T ss_pred ccccccccccc-ccccccCceeechhhhhcchhhHHHHHHHHHHHhCccceeeEe---ccCCcccEEEeeEecCCCcEEe
Confidence 77777765211 1234567899999999999 7999999999999999999886 4445678999999999999999
Q ss_pred EecccCCCCCCCchHHHHHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHH
Q 013898 265 PMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQI 344 (434)
Q Consensus 265 ~L~e~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~ 344 (434)
+||++. +++|||++||..++|+|||||||.|+||.+++++|+++ |++||++ |.+||+++.+|++ +++|++
T Consensus 223 plN~s~---~~~sqi~efl~~y~G~GIQHIA~~T~dI~~tv~~lr~r----G~~fl~i-p~tYYd~~~~R~~--~~~e~l 292 (363)
T COG3185 223 PLNESA---DDKSQIGEFLREYRGEGIQHIAFGTDDIYATVAALRER----GVKFLPI-PETYYDDLDARFP--LHGEFL 292 (363)
T ss_pred ecccCC---CchhHHHHHHHHhCCCcceEEEecccHHHHHHHHHHHc----CCccCCC-chhHHHHHhhcCC--CChHHH
Confidence 999996 57899999999999999999999999999999999999 9999997 5999999999999 899999
Q ss_pred HHHHhcCeEEecCCCc-eEEEEEccccCCCCCeEEEEEEeeccccccccCcccccCCCCCcCCccHHHHHHHHHHHHHHh
Q 013898 345 KQCEELGVLVDRDDQG-TLLQIFTKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEYEKTL 423 (434)
Q Consensus 345 ~~l~~~~iL~D~d~~g-~llqifT~~~~~r~~~FfEiIqR~g~~~~~~~~~~~~~~~~~GFG~gN~~aLf~aie~~~~~~ 423 (434)
++|++++||||+|++| .||||||+|+.+ ||||||||||+ |++|||+||||||||+||..|...
T Consensus 293 d~Lr~~~IL~D~~~~~~~lLQift~~~~g--~~FFEiIeRR~--------------g~~GfGegNF~Alfe~~eq~q~rR 356 (363)
T COG3185 293 DALRELEILYDGDGGGGELLQIFTRTFIG--PFFFEIIERRK--------------GYQGFGEGNFKALFESIEQDQIRR 356 (363)
T ss_pred HHHHhcCeEeecCCCCcEEEEEecccccC--ceeEEEEEecc--------------ccccccccchhhHHHHHHHHHhhh
Confidence 9999999999999988 999999999976 59999999953 259999999999999999999877
Q ss_pred CCCcc
Q 013898 424 GAKPV 428 (434)
Q Consensus 424 ~~~~~ 428 (434)
++-.+
T Consensus 357 gv~~~ 361 (363)
T COG3185 357 GVLRA 361 (363)
T ss_pred ccccC
Confidence 66544
No 5
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=100.00 E-value=2.2e-52 Score=387.76 Aligned_cols=189 Identities=56% Similarity=0.921 Sum_probs=173.4
Q ss_pred eeeeeeeeEecC--CHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHH
Q 013898 206 IRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYL 283 (434)
Q Consensus 206 l~~iDHv~i~V~--dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl 283 (434)
+++||||+++|+ |+++|++||+++|||+..+.++.++ ..++++|.++.++++.++|+|++|..+ ..+|++++|+
T Consensus 1 ~~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~---~~~~~~s~~l~~~~g~i~l~L~~~~~~-~~~s~~~~fl 76 (191)
T cd07250 1 LTRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIED---PYSGLRSRVLASPDGKIRIPLNEPASG-KRKSQIQEFL 76 (191)
T ss_pred CceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCc---CcccEEEEEEECCCCcEEEEEecCCCC-CCccHHHHHH
Confidence 468999999999 9999999999999999988765332 246689999999889999999998742 2579999999
Q ss_pred hhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEE
Q 013898 284 EHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLL 363 (434)
Q Consensus 284 ~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~ll 363 (434)
+.+.|+|+|||||.|+||++++++|+++ |++++.. |.+||++|.+|++..+.++++++|+++|||||+|++|+||
T Consensus 77 ~~~~G~Gv~HIAf~vdDI~~~~~~L~~~----Gv~~l~~-P~~yy~~l~~r~~~~~~~~~~~~l~~~~il~d~~~~~~ll 151 (191)
T cd07250 77 EYYGGAGVQHIALATDDIFATVAALRAR----GVEFLPI-PDNYYDDLEARLDGILVDEDLDTLRELGILVDRDDGGYLL 151 (191)
T ss_pred HHhCCCceeEEEEECCCHHHHHHHHHHc----CCeeccC-chhhHHHHHHhccccccchhHHHHHHCCEEEECCCCCEEE
Confidence 9999999999999999999999999999 9999986 5999999999998557899999999999999999999999
Q ss_pred EEEccccCCCCCeEEEEEEeeccccccccCcccccCCCCCcCCccHHHHHHHHHH
Q 013898 364 QIFTKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEE 418 (434)
Q Consensus 364 qifT~~~~~r~~~FfEiIqR~g~~~~~~~~~~~~~~~~~GFG~gN~~aLf~aie~ 418 (434)
||||+|+++|||||||||||+|+ +|||+|||+|||+|||+
T Consensus 152 q~ft~~~~~~~~~f~E~iqR~g~---------------~gfg~~N~~~l~~a~e~ 191 (191)
T cd07250 152 QIFTKPVFDRPTFFFEIIQRRGY---------------TGFGAGNFKALFEAIER 191 (191)
T ss_pred EEeccCCCCCCCeEEEEEEEcCC---------------CccccchHHHHHHHhhC
Confidence 99999999999999999999997 99999999999999985
No 6
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=99.90 E-value=6.1e-24 Score=185.59 Aligned_cols=125 Identities=32% Similarity=0.463 Sum_probs=101.5
Q ss_pred cCCCCCCCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccC
Q 013898 21 QNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAG 100 (434)
Q Consensus 21 ~~~~~~~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~ 100 (434)
+||+ .+.+++||||+|++++++..+| ..|||+.++++. .+.+++|+||+|+|+||+. |
T Consensus 2 ~nP~----g~~G~dFvEFa~~~~~~l~~~~-~~lGF~~~a~hr------sk~v~l~rQG~I~~vln~e--------p--- 59 (139)
T PF14696_consen 2 DNPL----GLDGFDFVEFAVPDAQALAQLF-TALGFQPVARHR------SKDVTLYRQGDINFVLNSE--------P--- 59 (139)
T ss_dssp --TT-----EEEEEEEEEE-SSTTSCHHHH-CCCCEEEECCEC------CCSEEEEEETTEEEEEEEE--------S---
T ss_pred CCCC----CCCCeEEEEEecCCHHHHHHHH-HHhCcceEEecC------CcceEEEEeCCEEEEEeCC--------C---
Confidence 4676 5999999999999987777766 589999999863 4678999999999999983 1
Q ss_pred CCCCCCCCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898 101 NSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY 178 (434)
Q Consensus 101 ~~~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~ 178 (434)
.+++++|++.||+|||+|||+|+|+.++++||+++|++.+.+|... +++.+|+|+++||++|+|||+
T Consensus 60 ----------~s~a~~~~~~HG~sv~aiafrV~Da~~A~~rA~~~GA~~~~~~~~~-~e~~~paI~g~G~sl~yfVdr 126 (139)
T PF14696_consen 60 ----------DSFAAEFAAQHGPSVCAIAFRVDDAAAAYERAVALGAEPVQEPTGP-GELNIPAIRGIGGSLHYFVDR 126 (139)
T ss_dssp ----------TSCHHHHHHHHSSEEEEEEEEES-HHHHHHHHHHTT--EEEEEEET-T-BEEEEEE-CCC-EEEEEE-
T ss_pred ----------cchHHHHHHhcCCEEEEEEEEeCCHHHHHHHHHHcCCcCcccCCCC-CcEeeeeEEccCCCEEEEEec
Confidence 2567999999999999999999999999999999999999888655 689999999999999999996
No 7
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.85 E-value=7e-19 Score=174.21 Aligned_cols=252 Identities=16% Similarity=0.206 Sum_probs=153.4
Q ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe-C---CEEEEEEcCCCCCCCcccccCCCCCC
Q 013898 30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS-G---DLRFVFTAPYSPSISDAADAGNSSAS 105 (434)
Q Consensus 30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~-G---~i~~vl~~p~~~~~~~~~~~~~~~~~ 105 (434)
+++++||.|.|+|++++++||+++|||+++.+.+ ....++. + ...+++..
T Consensus 2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~------------------ 55 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRDG--------QRVYLKAWDEWDHYSVILTE------------------ 55 (303)
T ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecC--------ceEEEEeccccccceEeecc------------------
Confidence 6789999999999999999999999999876532 0112221 1 12222211
Q ss_pred CCCCChhHHhHHHHhcCCceeEEEEEec---CHHHHHHHHHHcCCCCCCCCccc-cCceEEEEEEecCCeEEEEeeccCc
Q 013898 106 LPTFDHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPVIL-DNLAVIAEVQLYGDVVLRYVSYKDK 181 (434)
Q Consensus 106 ~~~~~~~~~~~~l~~hG~gv~~Iaf~V~---Dvd~a~~ra~~~Ga~~~~~p~~~-~~~~~~~~i~~~Gg~~~~fvd~~~~ 181 (434)
....++.|+||.|+ |+++++++++++|+++...|... .+......++.+.|..+++....+.
T Consensus 56 --------------~~~~g~~hiaf~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~~~~ 121 (303)
T TIGR03211 56 --------------ADTAGLDHMAFKVESEADLERLVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAEKEY 121 (303)
T ss_pred --------------CCCCceeEEEEEeCCHHHHHHHHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEcccc
Confidence 11246889999998 78999999999999875544311 1111223456666767777653211
Q ss_pred CCCCCCCCCCccCCCCCCCCcccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCc-eEEEEEcCCC
Q 013898 182 ANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGL-NSVVLANNDE 260 (434)
Q Consensus 182 ~~~g~~~p~f~~~~~~~~~~~~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~-~s~~l~~~~g 260 (434)
.. .......+.... ....++.+++|+||++.|+|++++.+||+++|||+........+ . .. ...++.....
T Consensus 122 -~~-~~~~~~~~~~~~-~~~~~~~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~--~---~~~~~~~~~~~~~ 193 (303)
T TIGR03211 122 -VG-ELVGGLNPDPWP-DPLRGVGARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGD--G---KEQAAAWLSVSNK 193 (303)
T ss_pred -cc-ccccccCCcccc-cccCCcCceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCC--C---cEEEEEEEEcCCC
Confidence 11 000011111000 01234568899999999999999999999999999765432111 0 01 1122222111
Q ss_pred ceEEEecccCCCCCCCchHHHHHhhcCCCC-ceEEEEEeCC---HHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcC
Q 013898 261 MVLLPMNEPVFGTKRKSQIQTYLEHNEGAG-VQHLALVSED---IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAG 336 (434)
Q Consensus 261 ~v~i~L~e~~~g~~~~s~i~~fl~~~~G~G-vqHIAf~vdD---I~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~ 336 (434)
...+.+ +.. .+.| ++||||.|+| +.++.++|+++ |++++..| ... +
T Consensus 194 ~~~~~~----------------~~~-~~~g~~~Hiaf~v~~~~~v~~~~~~l~~~----G~~~~~~p-~~~--------~ 243 (303)
T TIGR03211 194 AHDIAF----------------VGD-PEPGKLHHVSFFLDSWEDVLKAADVMSKN----DVSIDIGP-TRH--------G 243 (303)
T ss_pred Ccccce----------------ecC-CCCCceEEEEEEcCCHHHHHHHHHHHHhC----CCceeeCC-ccc--------C
Confidence 111111 111 2355 9999999997 55577889998 99987654 321 1
Q ss_pred CCCChhHHHHHHhcCeEEecCCCceEEEEEccc
Q 013898 337 DVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKP 369 (434)
Q Consensus 337 ~~l~~~~~~~l~~~~iL~D~d~~g~llqifT~~ 369 (434)
......+|-+|++|.++++++-.
T Consensus 244 ----------~~~~~~~y~~DPdG~~iEl~~~~ 266 (303)
T TIGR03211 244 ----------ITRGQTIYFFDPSGNRNETFGGG 266 (303)
T ss_pred ----------CCCceEEEEECCCCCEEEEecCC
Confidence 00112568899999999998543
No 8
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.84 E-value=1.8e-18 Score=170.38 Aligned_cols=246 Identities=19% Similarity=0.142 Sum_probs=151.6
Q ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe---C-CEEEEEEcCCCCCCCcccccCCCCCC
Q 013898 30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS---G-DLRFVFTAPYSPSISDAADAGNSSAS 105 (434)
Q Consensus 30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~---G-~i~~vl~~p~~~~~~~~~~~~~~~~~ 105 (434)
|.+++||.|.|+|++++++||+++|||+++.+.+ ....++. + ...+.+..
T Consensus 2 i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~--------~~~~~~~~~~~~~~~l~l~~------------------ 55 (294)
T TIGR02295 2 ILRTGHVELRVTDLDKSREFYVDLLGFRETESDK--------EYIYLRGIEEFQHHSLVLTK------------------ 55 (294)
T ss_pred CceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC--------CeEEEeccCcCCceEEEeee------------------
Confidence 6889999999999999999999999999876532 1122321 1 12233321
Q ss_pred CCCCChhHHhHHHHhcCCceeEEEEEec---CHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeeccCcC
Q 013898 106 LPTFDHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKA 182 (434)
Q Consensus 106 ~~~~~~~~~~~~l~~hG~gv~~Iaf~V~---Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~~~~~ 182 (434)
....++.++||.|+ |+++++++++++|+++...+... ......++.+.|..++|+...+..
T Consensus 56 --------------~~~~~~~hiaf~v~~~~dl~~~~~~l~~~Gv~v~~~~~~~--~~~~~~~~DPdG~~iEl~~~~~~~ 119 (294)
T TIGR02295 56 --------------APSAALSYIGFRVSKEEDLDKAADFFQKLGHPVRLVRDGG--QPEALRVEDPFGYPIEFYFEMEKV 119 (294)
T ss_pred --------------CCCcCccEEEEEeCCHHHHHHHHHHHHhcCCcEEeecCCC--CceEEEEECCCCCEEEEEEchhhc
Confidence 01236679999997 78999999999999865443211 123344566666667766531110
Q ss_pred CCCCCCCCCccCCCCCCCCcccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCce
Q 013898 183 NHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMV 262 (434)
Q Consensus 183 ~~g~~~p~f~~~~~~~~~~~~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v 262 (434)
+... .......+..+++|+||++.|+|++++.+||+++|||+...... +..+ .....++.......
T Consensus 120 ------~~~~---~~~~~~~~~~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~--~~~~---~~~~~~~~~~~~~~ 185 (294)
T TIGR02295 120 ------ERLL---RRYHRHRGVSPVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTE--DDEG---NLAAAWLHRKGGVH 185 (294)
T ss_pred ------cccc---ccccccCCccceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEec--cCCC---cEEEEEEecCCCcC
Confidence 1000 00001123467899999999999999999999999999865432 1111 11112222211111
Q ss_pred EEEecccCCCCCCCchHHHHHhhcCCCCceEEEEEeCCH---HHHHHHHHHhcCCCCce--eccCCCchhhHhHhhhcCC
Q 013898 263 LLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDI---FRTLREMRKRSGVGGFE--FMPSPPPTYYKNLKNRAGD 337 (434)
Q Consensus 263 ~i~L~e~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdDI---~~av~~L~~~~~~~Gv~--fl~~pP~~YY~~l~~R~~~ 337 (434)
.+.+. ...++|++||||.|+|+ .+..++|+++ |++ +... |. |-+
T Consensus 186 ~~~~~-----------------~~~~~~~~Hiaf~v~d~~~v~~~~~~l~~~----G~~~~~~~~-p~--------~~~- 234 (294)
T TIGR02295 186 DIALT-----------------NGNGPRLHHIAYWVHDPLNIIKACDILASA----GLSDSIERG-PG--------RHG- 234 (294)
T ss_pred ceEee-----------------cCCCCceeeEEEEcCCHHHHHHHHHHHHhC----CCCcccccC-Cc--------cCC-
Confidence 22221 11357899999999995 4567888888 986 2222 21 111
Q ss_pred CCChhHHHHHHhcCeEEecCCCceEEEEEccccC
Q 013898 338 VLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVG 371 (434)
Q Consensus 338 ~l~~~~~~~l~~~~iL~D~d~~g~llqifT~~~~ 371 (434)
....-.+|-+|++|.++++++.+++
T Consensus 235 ---------~~~~~~~y~~DP~G~~iEl~~~~~~ 259 (294)
T TIGR02295 235 ---------VSNAFFLYLRDPDGHRIELYTGDYL 259 (294)
T ss_pred ---------CCcceEEEEECCCCCEEEEEeccce
Confidence 0011135778999999999998863
No 9
>PLN02300 lactoylglutathione lyase
Probab=99.82 E-value=4.3e-18 Score=167.67 Aligned_cols=225 Identities=16% Similarity=0.202 Sum_probs=144.6
Q ss_pred CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeC--CE--EEEEEcCCCCCCCcccccCCCC
Q 013898 28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG--DL--RFVFTAPYSPSISDAADAGNSS 103 (434)
Q Consensus 28 ~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G--~i--~~vl~~p~~~~~~~~~~~~~~~ 103 (434)
+.+.+++||.|.|+|++++++||+++|||+.+.+...+.. ......+..| .. .+.+......
T Consensus 20 ~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~--~~~~~~l~~g~~~~~~~lel~~~~~~------------ 85 (286)
T PLN02300 20 KDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEE--KYTNAFLGYGPEDSNFVVELTYNYGV------------ 85 (286)
T ss_pred cccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCC--cEEEEEEccCCCCCceEEEEeccCCC------------
Confidence 5689999999999999999999999999998865432221 1122333332 22 3333221100
Q ss_pred CCCCCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccC-ceEEEEEEecCCeEEEEeeccCcC
Q 013898 104 ASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDN-LAVIAEVQLYGDVVLRYVSYKDKA 182 (434)
Q Consensus 104 ~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~-~~~~~~i~~~Gg~~~~fvd~~~~~ 182 (434)
.. ..++.|..|+||.|+|+++++++++++|+++...|..... ......++++.|..+.|++++
T Consensus 86 -----------~~--~~~~~g~~hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~--- 149 (286)
T PLN02300 86 -----------DK--YDIGTGFGHFGIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRG--- 149 (286)
T ss_pred -----------Cc--cccCCCccEEEEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCC---
Confidence 00 0245678899999999999999999999987766643321 122333444555555554420
Q ss_pred CCCCCCCCCccCCCCCCCCcccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEc-CC-C
Q 013898 183 NHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLAN-ND-E 260 (434)
Q Consensus 183 ~~g~~~p~f~~~~~~~~~~~~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~-~~-g 260 (434)
.....++|+.+.|+|++++..||+++|||+..+....++. +.....+.. +. .
T Consensus 150 ---------------------~~~~~~~~~~l~~~d~~~a~~Fy~~~lg~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 203 (286)
T PLN02300 150 ---------------------PTPEPLCQVMLRVGDLDRSIKFYEKAFGMKLLRKRDNPEY-----KYTIAMMGYGPEDK 203 (286)
T ss_pred ---------------------CCCCcceeEEEEeCCHHHHHHHHHhccCCEEEeeeccccc-----ceEEEEEecCCCCC
Confidence 0123678999999999999999999999998764431111 122222221 11 1
Q ss_pred ceEEEecccCCCCCCCchHHHHHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccC
Q 013898 261 MVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPS 322 (434)
Q Consensus 261 ~v~i~L~e~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~ 322 (434)
...+++.... .. .+ ...|+|.+|++|.|+||++++++++++ |++++..
T Consensus 204 ~~~lel~~~~----~~---~~---~~~g~~~~~i~~~v~di~~~~~~~~~~----G~~v~~~ 251 (286)
T PLN02300 204 TTVLELTYNY----GV---TE---YTKGNAYAQIAIGTDDVYKTAEAIKLV----GGKITRE 251 (286)
T ss_pred ccEEEEeecC----CC---Cc---cccCCceeEEEEecCCHHHHHHHHHHc----CCeEecC
Confidence 2234443221 11 11 124788999999999999999999999 9999863
No 10
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.82 E-value=4.5e-18 Score=167.26 Aligned_cols=255 Identities=15% Similarity=0.089 Sum_probs=153.1
Q ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeC--CEEEEEEcCCCCCCCcccccCCCCCCCC
Q 013898 30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG--DLRFVFTAPYSPSISDAADAGNSSASLP 107 (434)
Q Consensus 30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G--~i~~vl~~p~~~~~~~~~~~~~~~~~~~ 107 (434)
|.+++||.+.|+|++++.+||+++|||+.+.+.. .+ ...++.+ ...+.+...
T Consensus 1 ~~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~--~~-----~~~~~~~~~~~~~~l~~~------------------- 54 (286)
T TIGR03213 1 VRGLGYLGIGVSDVDAWREFATEVLGMMVASEGE--ND-----ALYLRLDSRAHRIAVHPG------------------- 54 (286)
T ss_pred CceeeEEEEEeCCHHHHHHHHHhccCcccccCCC--Cc-----eEEEEcCCCceEEEEEEC-------------------
Confidence 5789999999999999999999999999765422 11 1223433 344554321
Q ss_pred CCChhHHhHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCCCCCCcc---ccCceEEEEEEecCCeEEEEeeccCc
Q 013898 108 TFDHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVI---LDNLAVIAEVQLYGDVVLRYVSYKDK 181 (434)
Q Consensus 108 ~~~~~~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p~~---~~~~~~~~~i~~~Gg~~~~fvd~~~~ 181 (434)
...++.+++|.|+| ++++.++++++|+++...|.. ..+......++.+.|..+++......
T Consensus 55 -------------~~~~~~~~~f~V~~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~~~~ 121 (286)
T TIGR03213 55 -------------ESDDLAYAGWEVADEAGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYGAVE 121 (286)
T ss_pred -------------CcCCeeeEeeeeCCHHHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEcccc
Confidence 01245689999998 889999999999987655431 11112233445566666665542110
Q ss_pred CCCCCCCCCCccCCCCCCCCcccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCc
Q 013898 182 ANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEM 261 (434)
Q Consensus 182 ~~~g~~~p~f~~~~~~~~~~~~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~ 261 (434)
.....+. .+.. .. .. ....++|+||++.|+|++++++||+++|||+.......+.+.+ ......++.+.+..
T Consensus 122 ~~~~~~~---~~~~-~~-~~-~~~~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g--~~~~~~~l~~~~~~ 193 (286)
T TIGR03213 122 DFEKPFV---SPRA-VS-GF-VTGDQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPG--VTVRPYFLHCNERH 193 (286)
T ss_pred cCCCCCC---CCCC-CC-cc-ccCCccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCC--CcceEEEEEECCCc
Confidence 0000010 0000 00 01 1236899999999999999999999999999865432111100 00112233332222
Q ss_pred eEEEecccCCCCCCCchHHHHHhhcCCCCceEEEEEeCCHHH---HHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCC
Q 013898 262 VLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFR---TLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDV 338 (434)
Q Consensus 262 v~i~L~e~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdDI~~---av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~ 338 (434)
..+.+... ..+.|++||||.|+|+.+ ..++|+++ |+ ....| .. -+
T Consensus 194 ~~~~l~~~----------------~~~~~~~Hiaf~v~d~~~v~~~~~~l~~~----G~-~~~~~-~r--------~~-- 241 (286)
T TIGR03213 194 HSLAFAAG----------------PSEKRLNHLMLEVDTLDDVGLALDRVDAD----GI-VASTL-GR--------HT-- 241 (286)
T ss_pred ceEEEecC----------------CCCCceEEEEEEcCCHHHHHHHHHHHHHC----CC-EEecC-Cc--------CC--
Confidence 22333211 124679999999998777 78999998 98 33332 11 11
Q ss_pred CChhHHHHHHhcCeEEecCCCceEEEEEccccC
Q 013898 339 LTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVG 371 (434)
Q Consensus 339 l~~~~~~~l~~~~iL~D~d~~g~llqifT~~~~ 371 (434)
.-..--+|-+|++|++++++|--..
T Consensus 242 --------~~~~~~~y~~DP~G~~iE~~~~~~~ 266 (286)
T TIGR03213 242 --------NDHMVSFYVATPSGWLVEYGWGARV 266 (286)
T ss_pred --------CCCeEEEEEECCCCcEEEeecCcEE
Confidence 0012246779999999999995443
No 11
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.77 E-value=1.8e-17 Score=145.05 Aligned_cols=136 Identities=40% Similarity=0.600 Sum_probs=112.0
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChh
Q 013898 33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHA 112 (434)
Q Consensus 33 l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~ 112 (434)
+|||.|+|+|++++++||+++|||++..+...+ ...+..+.+|+..++|..+..+. +
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~----~~~~~~~~~g~~~l~l~~~~~~~-------------------~ 57 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE----DKASYLLRQGDINFVLNSPLNSF-------------------A 57 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCC----ceEEEEEEcCCEEEEEecCCCCC-------------------C
Confidence 589999999999999999999999998775421 12355667899999987654321 2
Q ss_pred HHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeeccCcCCCCCCCCCCc
Q 013898 113 ACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFE 192 (434)
Q Consensus 113 ~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~~~~~~~g~~~p~f~ 192 (434)
...+++..|+.++.||||+|+|+++++++++++|++++.+|+......+.+.|++++|..++|+++ ..|+|.|+|+|+
T Consensus 58 ~~~~~~~~~~~g~~hia~~V~Dvda~~~~l~~~G~~v~~~p~~~~~~~~~~~i~dp~G~~ie~~~~--~~~~~~~~~~~~ 135 (136)
T cd08342 58 PVADFLEKHGDGVCDVAFRVDDAAAAYERAVARGAKPVQEPVEEPGELKIAAIKGYGDSLHTLVDR--KGYKGPFLPGFE 135 (136)
T ss_pred chHHHHHhcCCceEEEEEEeCCHHHHHHHHHHcCCeEccCceecCCeEEEEEEeccCCcEEEEEec--CCCCCccCCCCC
Confidence 235667788899999999999999999999999999999887744556788899999999999996 458899999997
Q ss_pred c
Q 013898 193 P 193 (434)
Q Consensus 193 ~ 193 (434)
|
T Consensus 136 ~ 136 (136)
T cd08342 136 P 136 (136)
T ss_pred C
Confidence 5
No 12
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.50 E-value=9.5e-14 Score=116.88 Aligned_cols=97 Identities=24% Similarity=0.443 Sum_probs=78.9
Q ss_pred eeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCC
Q 013898 210 DHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGA 289 (434)
Q Consensus 210 DHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~ 289 (434)
|||++.|+|++++++||+++||++..+....+ ..+++..++..+++.+.|+|.+|.. .. .+++. +|.
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~-----~~~v~~~~~~~~~~~~~iELi~p~~---~~----~~~~~-~~~ 67 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDE-----PQGVRVAFLYLGDGPVQIELIQPLD---GD----SPLDR-GGG 67 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEG-----CTTEEEEEEEETTETEEEEEEEESS---TT----CHHHH-TSS
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecC-----CCCEEEEEEEeCCCcEEEEEEEeCC---CC----ccccc-CCC
Confidence 79999999999999999999999977655421 2346777777777679999999974 23 34545 689
Q ss_pred CceEEEEEeCCHHHHHHHHHHhcCCCCceeccCC
Q 013898 290 GVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP 323 (434)
Q Consensus 290 GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~p 323 (434)
|++||||.|+||++++++|+++ |++++..+
T Consensus 68 gi~Hia~~v~D~d~~~~~l~~~----G~~~~~~~ 97 (109)
T PF13669_consen 68 GIHHIAFEVDDLDAAIARLEAQ----GFRVLDEG 97 (109)
T ss_dssp EEEEEEEEESHHHHHHHHHHHT----TECEEECE
T ss_pred CEEEEEEEeCCHHHHHHHHHHC----CCEEcccC
Confidence 9999999999999999999999 99998753
No 13
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.49 E-value=1.9e-13 Score=119.73 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=74.6
Q ss_pred eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccC------cccccCceEEEEEcCCCceEEEecccCCCCCCCchH
Q 013898 206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDV------GTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQI 279 (434)
Q Consensus 206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~------~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i 279 (434)
+++++||++.|+|++++++||++ |||+.......... +....+.+...+..+++...|+|.++........
T Consensus 1 ~~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~~~~~~~~-- 77 (142)
T cd08353 1 VSRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFHHPAVIAD-- 77 (142)
T ss_pred CceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEecCCCCcCc--
Confidence 46899999999999999999998 99987654321110 0001123344555566778888887542111110
Q ss_pred HHHHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccC
Q 013898 280 QTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPS 322 (434)
Q Consensus 280 ~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~ 322 (434)
..+.. .++.|++||||.|+|+++++++|+++ |++++..
T Consensus 78 ~~~~~-~~~~g~~hia~~v~d~d~~~~~l~~~----G~~~~~~ 115 (142)
T cd08353 78 HRPAP-VNALGLRRVMFAVDDIDARVARLRKH----GAELVGE 115 (142)
T ss_pred CCCCC-CCCCCceEEEEEeCCHHHHHHHHHHC----CCceeCC
Confidence 01222 24678999999999999999999999 9999973
No 14
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.48 E-value=8.4e-13 Score=115.39 Aligned_cols=98 Identities=21% Similarity=0.297 Sum_probs=76.1
Q ss_pred eeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCC
Q 013898 209 LDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEG 288 (434)
Q Consensus 209 iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G 288 (434)
|||++++|+|++++++||+++|||+..+....+ +.....+. ++.+.+.|..+.. ..++..++++. .+
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~-------~~~~~~~~--~g~~~l~l~~~~~---~~~~~~~~~~~-~~ 67 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE-------DKASYLLR--QGDINFVLNSPLN---SFAPVADFLEK-HG 67 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCC-------ceEEEEEE--cCCEEEEEecCCC---CCCchHHHHHh-cC
Confidence 699999999999999999999999988764311 12222233 4567888877642 34556677766 46
Q ss_pred CCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCC
Q 013898 289 AGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP 323 (434)
Q Consensus 289 ~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~p 323 (434)
.|++||||.|+||++++++|+++ |++++..|
T Consensus 68 ~g~~hia~~V~Dvda~~~~l~~~----G~~v~~~p 98 (136)
T cd08342 68 DGVCDVAFRVDDAAAAYERAVAR----GAKPVQEP 98 (136)
T ss_pred CceEEEEEEeCCHHHHHHHHHHc----CCeEccCc
Confidence 78999999999999999999999 99999753
No 15
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.46 E-value=7.5e-13 Score=122.94 Aligned_cols=110 Identities=19% Similarity=0.169 Sum_probs=88.9
Q ss_pred cceEEEEEEEeC--CHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe--CCEEEEEEcCCCCCCCcccccCCCCCC
Q 013898 30 VNRFHHVEFWCT--DATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS--GDLRFVFTAPYSPSISDAADAGNSSAS 105 (434)
Q Consensus 30 i~~l~HI~~~V~--da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~--G~i~~vl~~p~~~~~~~~~~~~~~~~~ 105 (434)
+.++|||.++|+ |+++|++||+++|||+...+...++......+.++.+ |++.|.|++|..+..
T Consensus 1 ~~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~~~~~------------ 68 (191)
T cd07250 1 LTRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPASGKR------------ 68 (191)
T ss_pred CceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCCCCCC------------
Confidence 468999999999 9999999999999999988765444323355666664 679999998764210
Q ss_pred CCCCChhHHhHHHHhc-CCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccc
Q 013898 106 LPTFDHAACRSFAASH-GLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVIL 156 (434)
Q Consensus 106 ~~~~~~~~~~~~l~~h-G~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~ 156 (434)
.+.+.+|+..| |+|+.||||.|+|+++++++++++|++++..|...
T Consensus 69 -----~s~~~~fl~~~~G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P~~y 115 (191)
T cd07250 69 -----KSQIQEFLEYYGGAGVQHIALATDDIFATVAALRARGVEFLPIPDNY 115 (191)
T ss_pred -----ccHHHHHHHHhCCCceeEEEEECCCHHHHHHHHHHcCCeeccCchhh
Confidence 25678999888 68999999999999999999999999988877554
No 16
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.42 E-value=3.2e-12 Score=111.85 Aligned_cols=129 Identities=19% Similarity=0.246 Sum_probs=89.2
Q ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCC-------Cc--eeEEEEEEE--eCCEEEEEEcCCCCCCCcccc
Q 013898 30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLST-------GN--TVHASYLLR--SGDLRFVFTAPYSPSISDAAD 98 (434)
Q Consensus 30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~-------g~--~~~~~~~l~--~G~i~~vl~~p~~~~~~~~~~ 98 (434)
+.+++||.|.|+|++++++||++ |||+.......+. |. .......+. .|+..++|.++..+...
T Consensus 1 ~~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~~~~~~---- 75 (142)
T cd08353 1 VSRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFHHPAVI---- 75 (142)
T ss_pred CceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEecCCCCc----
Confidence 46899999999999999999998 9998765432211 00 112334444 37788888876543210
Q ss_pred cCCCCCCCCCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEee
Q 013898 99 AGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS 177 (434)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd 177 (434)
.. ..+...++.|+.||||+|+|+++++++++++|+++..+|....+..+...++++.|..+++++
T Consensus 76 ------~~--------~~~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~~r~~~~~DPdG~~iEl~e 140 (142)
T cd08353 76 ------AD--------HRPAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYENSYRLCYIRGPEGILIELAE 140 (142)
T ss_pred ------Cc--------CCCCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCCCeEEEEEECCCCCEEEeee
Confidence 00 011224566899999999999999999999999987765443334556667777777777776
No 17
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.36 E-value=5.5e-12 Score=127.95 Aligned_cols=114 Identities=16% Similarity=0.146 Sum_probs=91.6
Q ss_pred CCCCcceEEEEEEEeC--CHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe--CCEEEEEEcCCCCCCCcccccCC
Q 013898 26 DRFRVNRFHHVEFWCT--DATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS--GDLRFVFTAPYSPSISDAADAGN 101 (434)
Q Consensus 26 ~~~~i~~l~HI~~~V~--da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~--G~i~~vl~~p~~~~~~~~~~~~~ 101 (434)
+.+.+.++|||.++|+ |+++|+.||+++|||++..+..+++......+.++.+ |+++|.|++|.....
T Consensus 152 ~~~~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~~g~~~i~L~ep~~~~~-------- 223 (353)
T TIGR01263 152 PGVGLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASPDGKVKIPLNEPASGKD-------- 223 (353)
T ss_pred CCCCeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECCCCcEEEEEeccCCCCC--------
Confidence 3566899999999999 9999999999999999987765444322344555553 789999998753210
Q ss_pred CCCCCCCCChhHHhHHHHhc-CCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccc
Q 013898 102 SSASLPTFDHAACRSFAASH-GLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVIL 156 (434)
Q Consensus 102 ~~~~~~~~~~~~~~~~l~~h-G~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~ 156 (434)
.+++.+|+..| |+|+.||||+|+|+++++++++++|+.++..|...
T Consensus 224 ---------~s~i~~fl~~~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P~~y 270 (353)
T TIGR01263 224 ---------KSQIEEFLEFYNGAGVQHIALNTDDIVRTVRALRARGVEFLDTPDTY 270 (353)
T ss_pred ---------CCHHHHHHHHcCCCCccEEEEEcCCHHHHHHHHHHcCCccCcCCHHH
Confidence 25678999998 68999999999999999999999999988877553
No 18
>PLN02367 lactoylglutathione lyase
Probab=99.35 E-value=1.5e-11 Score=116.48 Aligned_cols=134 Identities=13% Similarity=0.299 Sum_probs=93.0
Q ss_pred eeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcC-----------------CCceEEEeccc
Q 013898 207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANN-----------------DEMVLLPMNEP 269 (434)
Q Consensus 207 ~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~-----------------~g~v~i~L~e~ 269 (434)
-.+.|+.+.|.|++++++||+++|||+.....+.++. +++...+..+ .....|+|..+
T Consensus 74 ~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~-----~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n 148 (233)
T PLN02367 74 YIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEM-----KFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHN 148 (233)
T ss_pred cEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCC-----cEEEEEeecCCccccccccccceeeccCCCCEEEEecC
Confidence 4689999999999999999999999998776542221 1322333211 12357888776
Q ss_pred CCCCCCCchHHHHHhhcC-CCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHH
Q 013898 270 VFGTKRKSQIQTYLEHNE-GAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCE 348 (434)
Q Consensus 270 ~~g~~~~s~i~~fl~~~~-G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~ 348 (434)
.. ....+.+..|+..+. ..|++||||.|+||++++++|+++ |++++..| .. + .
T Consensus 149 ~g-~e~~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~----Gv~~v~~P-~~---------g-----------~ 202 (233)
T PLN02367 149 WG-TESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEEL----GVEFVKKP-ND---------G-----------K 202 (233)
T ss_pred CC-CCccccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHC----CCEEEeCC-cc---------C-----------C
Confidence 52 122245667776543 268999999999999999999999 99999643 31 1 0
Q ss_pred hcCeEEecCCCceEEEEEccccC
Q 013898 349 ELGVLVDRDDQGTLLQIFTKPVG 371 (434)
Q Consensus 349 ~~~iL~D~d~~g~llqifT~~~~ 371 (434)
..++.+-+|++|++++|+..+..
T Consensus 203 ~~riaFIkDPDGn~IEL~e~~~~ 225 (233)
T PLN02367 203 MKGIAFIKDPDGYWIEIFDLKTI 225 (233)
T ss_pred ceEEEEEECCCCCEEEEEecccc
Confidence 12355668899998888865543
No 19
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.35 E-value=1.2e-11 Score=105.60 Aligned_cols=100 Identities=28% Similarity=0.463 Sum_probs=74.2
Q ss_pred eeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcC
Q 013898 208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNE 287 (434)
Q Consensus 208 ~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~ 287 (434)
+|+|+++.|+|++++++||+++|||+........ ..+....++..+ ...+.|.++. ...+++..++..+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~-----~~~~~~~~~~~~--~~~i~l~~~~---~~~~~~~~~~~~~- 69 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVP-----EQGVKVVFIALG--NTKVELLEPL---GEDSPIAKFLEKN- 69 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCC-----CCCcEEEEEecC--CEEEEEEecC---CCCChHHHHHhcC-
Confidence 5899999999999999999999999986543211 112344444433 4567776653 1344556676664
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccC
Q 013898 288 GAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPS 322 (434)
Q Consensus 288 G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~ 322 (434)
+.|++||||.|+|+++++++|+++ |++++..
T Consensus 70 ~~g~~~i~~~v~di~~~~~~l~~~----G~~~~~~ 100 (128)
T TIGR03081 70 GGGIHHIAIEVDDIEAALETLKEK----GVRLIDE 100 (128)
T ss_pred CCceEEEEEEcCCHHHHHHHHHHC----CCcccCC
Confidence 678999999999999999999999 9998864
No 20
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.35 E-value=4.2e-12 Score=106.80 Aligned_cols=95 Identities=22% Similarity=0.181 Sum_probs=76.3
Q ss_pred EEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC--EEEEEEcCCCCCCCcccccCCCCCCCCCCCh
Q 013898 34 HHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD--LRFVFTAPYSPSISDAADAGNSSASLPTFDH 111 (434)
Q Consensus 34 ~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~--i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~ 111 (434)
|||.|.|+|++++++||++.||++.......+. ......++..++ +.|+|.+|..+.
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~--~~v~~~~~~~~~~~~~iELi~p~~~~------------------- 59 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEP--QGVRVAFLYLGDGPVQIELIQPLDGD------------------- 59 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGC--TTEEEEEEEETTETEEEEEEEESSTT-------------------
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCC--CCEEEEEEEeCCCcEEEEEEEeCCCC-------------------
Confidence 799999999999999999999999776543222 234566667666 799999986532
Q ss_pred hHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCC
Q 013898 112 AACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPP 153 (434)
Q Consensus 112 ~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p 153 (434)
+++.++|.|+.||||+|+|++++.+++.++|++++..+
T Consensus 60 ----~~~~~~~~gi~Hia~~v~D~d~~~~~l~~~G~~~~~~~ 97 (109)
T PF13669_consen 60 ----SPLDRGGGGIHHIAFEVDDLDAAIARLEAQGFRVLDEG 97 (109)
T ss_dssp ----CHHHHTSSEEEEEEEEESHHHHHHHHHHHTTECEEECE
T ss_pred ----cccccCCCCEEEEEEEeCCHHHHHHHHHHCCCEEcccC
Confidence 34667999999999999999999999999999987654
No 21
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.34 E-value=2.6e-11 Score=103.15 Aligned_cols=117 Identities=17% Similarity=0.218 Sum_probs=86.1
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChh
Q 013898 33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHA 112 (434)
Q Consensus 33 l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~ 112 (434)
|+||+|+|+|++++.+||++.|||+.......+.+ .......++.|++.+.|..+.... +
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~-~~~~~~~~~~~~~~l~l~~~~~~~-------------------~ 60 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPE-QGVRVAFLGLGNVQIELIEPLDDD-------------------S 60 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcc-cccEEEEEEcCCEEEEEEEECCCC-------------------C
Confidence 58999999999999999999999999876543200 113356677899999888754321 1
Q ss_pred HHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeecc
Q 013898 113 ACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYK 179 (434)
Q Consensus 113 ~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~~ 179 (434)
....+...++.|++|++|+|+|+++++++++++|++++.+|... ..++..+.+++++
T Consensus 61 ~~~~~~~~~~~g~~h~~f~v~d~~~~~~~l~~~G~~~~~~~~~~----------~~~g~~~~~~d~~ 117 (128)
T cd07249 61 PIAKFLEKRGEGLHHIAFEVDDIDAALARLKAQGVRLLQEGPRI----------GAGGKRVAFLHPK 117 (128)
T ss_pred cHHHHHhcCCCceEEEEEEeCCHHHHHHHHHHCCCeeeccCCCc----------cCCCCEEEEEecC
Confidence 12234556778999999999999999999999999987766422 2355566666653
No 22
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.34 E-value=3.5e-11 Score=102.65 Aligned_cols=100 Identities=19% Similarity=0.286 Sum_probs=76.2
Q ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCCh
Q 013898 32 RFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDH 111 (434)
Q Consensus 32 ~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~ 111 (434)
+++||.++|+|++++++||++.|||+.......+.. .....+++.|+..+.|..+....
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~--~~~~~~~~~~~~~i~l~~~~~~~------------------- 59 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQ--GVKVVFIALGNTKVELLEPLGED------------------- 59 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCC--CcEEEEEecCCEEEEEEecCCCC-------------------
Confidence 479999999999999999999999998765322121 23456677788888887643211
Q ss_pred hHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCC
Q 013898 112 AACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSP 152 (434)
Q Consensus 112 ~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~ 152 (434)
+....++..++.|+.+|||+|+|+++++++++++|++++.+
T Consensus 60 ~~~~~~~~~~~~g~~~i~~~v~di~~~~~~l~~~G~~~~~~ 100 (128)
T TIGR03081 60 SPIAKFLEKNGGGIHHIAIEVDDIEAALETLKEKGVRLIDE 100 (128)
T ss_pred ChHHHHHhcCCCceEEEEEEcCCHHHHHHHHHHCCCcccCC
Confidence 12344566677799999999999999999999999998764
No 23
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.33 E-value=1.3e-11 Score=111.57 Aligned_cols=137 Identities=19% Similarity=0.247 Sum_probs=85.7
Q ss_pred eeeeeeeEecCCHHHHHHHHHHhhCCeeeeee--ecccC-----------cccccCceEEEEEcCCCceEEEecccCCCC
Q 013898 207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEF--TAEDV-----------GTSESGLNSVVLANNDEMVLLPMNEPVFGT 273 (434)
Q Consensus 207 ~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~--~~~d~-----------~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~ 273 (434)
++||||+++|+|++++++||+++|||+...+. ..++. +.....++...+..+ +...|+|.+...
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~ieL~~~~~-- 79 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTG-DRIGVELFEFKN-- 79 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecC-CCCcEEEEeccC--
Confidence 57999999999999999999999999874211 00110 001112333344433 345678777642
Q ss_pred CCCchHHHHHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeE
Q 013898 274 KRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVL 353 (434)
Q Consensus 274 ~~~s~i~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL 353 (434)
..++...+.. .+.|++|+||.|+||++++++|+++ |+.++..+|...+ + .. .....+
T Consensus 80 -~~~~~~~~~~--~~~g~~Hla~~v~dida~~~~l~~~----G~~~~~~~~~~~~-------~----~~-----~~~~~~ 136 (162)
T TIGR03645 80 -QENPEDNFEY--WKTGVFHFCVQDPDVEGLAERIVAA----GGKKRMPVPRYYY-------P----GE-----KPYRMI 136 (162)
T ss_pred -CCCCCccccc--ccccceEEEEEcCCHHHHHHHHHHc----CCcccCCCccccC-------C----CC-----CceEEE
Confidence 1222222211 3678999999999999999999999 9876533222110 0 00 012366
Q ss_pred EecCCCceEEEEEccc
Q 013898 354 VDRDDQGTLLQIFTKP 369 (434)
Q Consensus 354 ~D~d~~g~llqifT~~ 369 (434)
+-+|++|+++++++++
T Consensus 137 ~~~DPdG~~iEl~~~~ 152 (162)
T TIGR03645 137 YMEDPFGNILEIYSHS 152 (162)
T ss_pred EEECCCCCEEEEEEcC
Confidence 8888899888776655
No 24
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.32 E-value=2.4e-11 Score=112.13 Aligned_cols=106 Identities=10% Similarity=0.268 Sum_probs=73.1
Q ss_pred eeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcC-----------------CCceEEEeccc
Q 013898 207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANN-----------------DEMVLLPMNEP 269 (434)
Q Consensus 207 ~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~-----------------~g~v~i~L~e~ 269 (434)
-+++|++|.|+|+++++.||+++|||+...+...++. +++...+..+ .....|+|.++
T Consensus 26 ~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~-----~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~ 100 (185)
T PLN03042 26 YIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEM-----KFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHN 100 (185)
T ss_pred cEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCC-----ceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEc
Confidence 4799999999999999999999999998776532111 1222222211 12357888765
Q ss_pred CCCCCCCchHHHHHhhc-CCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccC
Q 013898 270 VFGTKRKSQIQTYLEHN-EGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPS 322 (434)
Q Consensus 270 ~~g~~~~s~i~~fl~~~-~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~ 322 (434)
... .....+.+|+... .+.|++||||.|+||++++++|+++ |++++..
T Consensus 101 ~~~-~~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~----Gv~v~~~ 149 (185)
T PLN03042 101 WGT-ESDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKL----GVEFVKK 149 (185)
T ss_pred CCC-cccccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHC----CCeEEeC
Confidence 421 1111234455432 2468999999999999999999999 9999864
No 25
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.27 E-value=9e-12 Score=105.44 Aligned_cols=128 Identities=23% Similarity=0.326 Sum_probs=84.8
Q ss_pred eeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcC
Q 013898 208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNE 287 (434)
Q Consensus 208 ~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~ 287 (434)
+|+||++.|.|++++++||+++|||+......... .........+..+...+.+.++....+ ..... .+.. ++
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~-~~~~-~~ 73 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDG---EGGDLRIAFLRIGEGHIELFLNPSPPP--RASGH-SFPE-HG 73 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEES---TTEEEEEEEEESTSSCEEEEEEESSSS--SSEEE-HHHS-HT
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeecccc---ccccccceeecccccceeeeeeccccc--ccccc-cccc-cc
Confidence 68999999999999999999999999987654211 112245566677777778877766531 12111 0111 12
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEE
Q 013898 288 GAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQI 365 (434)
Q Consensus 288 G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqi 365 (434)
..|+.|+++.++|+.++.++|++. |+++...| ..+|..- ....|.+|++|++++|
T Consensus 74 ~~~i~~~~~~~~dl~~~~~~l~~~----g~~~~~~~-~~~~~~~------------------~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 74 GHHIAFLAFDVDDLDAAYERLKAQ----GVEIVEEP-DRYYFGS------------------GYSFYFRDPDGNLIEF 128 (128)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHT----TGEEEEEE-EEHSTTC------------------EEEEEEEETTSEEEEE
T ss_pred ceeEEEEeccHHHHHHHHHHHhhc----CccEEecC-CCCCCCC------------------EEEEEEECCCCCEEEC
Confidence 334555555556888999999999 99999764 4432211 0112689999999885
No 26
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.24 E-value=1.8e-10 Score=101.78 Aligned_cols=121 Identities=14% Similarity=0.143 Sum_probs=78.0
Q ss_pred cceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHH
Q 013898 204 YGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYL 283 (434)
Q Consensus 204 ~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl 283 (434)
+.+++|+||++.|+|++++++||+++|||+........+ +. .....++.+.+....+.+..
T Consensus 2 ~~~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~-~~---~~~~~~l~~~~~~h~~~~~~--------------- 62 (143)
T cd07243 2 IGAHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPD-GG---TRVGSFLSCSNKPHDIAFVG--------------- 62 (143)
T ss_pred CCCceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCC-CC---eEEEEEEecCCCcceEEEec---------------
Confidence 357899999999999999999999999999765432111 10 01122333222211222211
Q ss_pred hhcCCCCceEEEEEeCCHHH---HHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCc
Q 013898 284 EHNEGAGVQHLALVSEDIFR---TLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQG 360 (434)
Q Consensus 284 ~~~~G~GvqHIAf~vdDI~~---av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g 360 (434)
..+.|++|+||.|+|+.+ +.++|+++ |+++...| .. .+ +-...-+|-+|++|
T Consensus 63 --~~~~~~~Hiaf~v~d~~~l~~~~~~l~~~----Gv~i~~~p-~~--------~~----------~~~~~~~yf~DPdG 117 (143)
T cd07243 63 --GPDGKLHHFSFFLESWEDVLKAGDIISMN----DVSIDIGP-TR--------HG----------ITRGQTIYFFDPSG 117 (143)
T ss_pred --CCCCCceEEEEEcCCHHHHHHHHHHHHHc----CCceEECC-cC--------CC----------CCCceEEEEECCCC
Confidence 123679999999999877 56788888 99876554 11 11 01122468889999
Q ss_pred eEEEEEcc
Q 013898 361 TLLQIFTK 368 (434)
Q Consensus 361 ~llqifT~ 368 (434)
..+++|+.
T Consensus 118 ~~iEl~~~ 125 (143)
T cd07243 118 NRNETFAG 125 (143)
T ss_pred CEEEEecC
Confidence 99999875
No 27
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=99.24 E-value=6.1e-11 Score=120.83 Aligned_cols=110 Identities=13% Similarity=0.111 Sum_probs=88.3
Q ss_pred CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCC---ceeEEEEEEEe--CCEEEEEEcCCCCCCCcccccCCC
Q 013898 28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTG---NTVHASYLLRS--GDLRFVFTAPYSPSISDAADAGNS 102 (434)
Q Consensus 28 ~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g---~~~~~~~~l~~--G~i~~vl~~p~~~~~~~~~~~~~~ 102 (434)
..+.+||||.+.|+++++|+.||+++|||+...+...++. ...+.+.++.. |.++|.|++|.....
T Consensus 176 ~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~g~v~ipLnEP~~~~~--------- 246 (398)
T PLN02875 176 YGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNNEMVLLPLNEPTFGTK--------- 246 (398)
T ss_pred CCcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCCCcEEEEeccCCCCCC---------
Confidence 3578999999999999999999999999998875543321 11256777777 459999999864210
Q ss_pred CCCCCCCChhHHhHHHHhcC-CceeEEEEEecCHHHHHHHHHHc----CCCCCCCC
Q 013898 103 SASLPTFDHAACRSFAASHG-LAARSIAVEVEDADVAFNTSVAH----GAKPSSPP 153 (434)
Q Consensus 103 ~~~~~~~~~~~~~~~l~~hG-~gv~~Iaf~V~Dvd~a~~ra~~~----Ga~~~~~p 153 (434)
..|++++||++|+ +||.||||+|+|+.++.++++++ |+..+..|
T Consensus 247 -------~~SqI~eFL~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~P 295 (398)
T PLN02875 247 -------RKSQIQTYLEHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPP 295 (398)
T ss_pred -------CcChHHHHHHhcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCC
Confidence 0268999999995 89999999999999999999998 88877654
No 28
>PRK11478 putative lyase; Provisional
Probab=99.23 E-value=1.4e-10 Score=99.37 Aligned_cols=126 Identities=18% Similarity=0.258 Sum_probs=80.1
Q ss_pred ceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHh
Q 013898 205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLE 284 (434)
Q Consensus 205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~ 284 (434)
.+++++||++.|+|++++++||+++|||+.......++ .. ..... +.. ++...+.|.+........ .
T Consensus 3 ~i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~-~~---~~~~~-~~~-~~~~~l~l~~~~~~~~~~-------~ 69 (129)
T PRK11478 3 GLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREA-RD---SWKGD-LAL-NGQYVIELFSFPFPPERP-------S 69 (129)
T ss_pred CcceecEEEEEcCCHHHHHHHHHHHhCCEecccccccc-cc---cceee-Eec-CCCcEEEEEEecCCCCCC-------C
Confidence 47889999999999999999999999999764321010 00 01111 111 234556654421100000 0
Q ss_pred hcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEE
Q 013898 285 HNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQ 364 (434)
Q Consensus 285 ~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llq 364 (434)
.....|++||||.|+|+++++++|+++ |+++...+ ...+ . ...++|-+|++|+.++
T Consensus 70 ~~~~~g~~hi~f~v~d~~~~~~~l~~~----G~~~~~~~-~~~~------~-------------g~~~~~~~DPdG~~iE 125 (129)
T PRK11478 70 RPEACGLRHLAFSVDDIDAAVAHLESH----NVKCEAIR-VDPY------T-------------QKRFTFFNDPDGLPLE 125 (129)
T ss_pred CCCCCceeEEEEEeCCHHHHHHHHHHc----CCeeeccc-cCCC------C-------------CCEEEEEECCCCCEEE
Confidence 113467999999999999999999999 99987532 1100 0 1235577899999888
Q ss_pred EEc
Q 013898 365 IFT 367 (434)
Q Consensus 365 ifT 367 (434)
++-
T Consensus 126 l~~ 128 (129)
T PRK11478 126 LYE 128 (129)
T ss_pred EEe
Confidence 764
No 29
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.23 E-value=6e-11 Score=106.04 Aligned_cols=123 Identities=17% Similarity=0.159 Sum_probs=79.2
Q ss_pred eeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcC
Q 013898 208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNE 287 (434)
Q Consensus 208 ~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~ 287 (434)
+|+||++.|+|++++++||+++|||+.......+.. .+....++..+++...+ ....+. +....
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~----------~~~~~~--l~~~~ 64 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGP----GNPVAAFLRLDRGEEYV----------DHHTLA--LAQGP 64 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCC----CCcEEEEEecCCCCCcc----------cchHHH--HhcCC
Confidence 589999999999999999999999997654321100 11222333332221000 111222 22223
Q ss_pred CCCceEEEEEeCCHHHHH---HHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEE
Q 013898 288 GAGVQHLALVSEDIFRTL---REMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQ 364 (434)
Q Consensus 288 G~GvqHIAf~vdDI~~av---~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llq 364 (434)
+.|++||||.|+|++++. ++|+++ |++++..| .. -. .-..-.+|-+|++|++++
T Consensus 65 ~~g~~Hiaf~v~die~~~~~~~~L~~~----Gv~v~~~~-g~--------~~----------~g~~~~~y~~DPdG~~iE 121 (153)
T cd07257 65 ESGVHHAAFEVHDFDAQGLGHDYLREK----GYEHVWGV-GR--------HI----------LGSQIFDYWFDPWGFIVE 121 (153)
T ss_pred CCceeEEEEEcCCHHHHHHHHHHHHHC----CCcEeecC-Cc--------cC----------CCCCEEEEEECCCCCEEE
Confidence 678999999999999886 999999 99988543 11 00 001124688899999999
Q ss_pred EEccc
Q 013898 365 IFTKP 369 (434)
Q Consensus 365 ifT~~ 369 (434)
+|...
T Consensus 122 l~~~~ 126 (153)
T cd07257 122 HYTDG 126 (153)
T ss_pred EEcCc
Confidence 99765
No 30
>PLN02367 lactoylglutathione lyase
Probab=99.21 E-value=3.2e-10 Score=107.46 Aligned_cols=128 Identities=13% Similarity=0.140 Sum_probs=94.8
Q ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe-------------------CCEEEEEEcCCCC
Q 013898 31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS-------------------GDLRFVFTAPYSP 91 (434)
Q Consensus 31 ~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~-------------------G~i~~vl~~p~~~ 91 (434)
..+.|+.+.|.|++++++||+++|||++..+...+++. ...+.+.. +...|+|+.+...
T Consensus 74 ~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~--f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~ 151 (233)
T PLN02367 74 YIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMK--FSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGT 151 (233)
T ss_pred cEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCc--EEEEEeecCCccccccccccceeeccCCCCEEEEecCCCC
Confidence 57999999999999999999999999999877655532 33344421 2357788765542
Q ss_pred CCCcccccCCCCCCCCCCChhHHhHHHHhcC--CceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecC
Q 013898 92 SISDAADAGNSSASLPTFDHAACRSFAASHG--LAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYG 169 (434)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~hG--~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~G 169 (434)
+. .+.+..|....+ .|..||||+|+|++++++++.++|++++..|.... ...++.|++++
T Consensus 152 e~-----------------~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~-~~riaFIkDPD 213 (233)
T PLN02367 152 ES-----------------DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGK-MKGIAFIKDPD 213 (233)
T ss_pred Cc-----------------cccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCC-ceEEEEEECCC
Confidence 20 012344555555 49999999999999999999999999887775432 24567788888
Q ss_pred CeEEEEeec
Q 013898 170 DVVLRYVSY 178 (434)
Q Consensus 170 g~~~~fvd~ 178 (434)
|..+++++.
T Consensus 214 Gn~IEL~e~ 222 (233)
T PLN02367 214 GYWIEIFDL 222 (233)
T ss_pred CCEEEEEec
Confidence 889999885
No 31
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.19 E-value=4.2e-10 Score=103.87 Aligned_cols=129 Identities=13% Similarity=0.138 Sum_probs=90.2
Q ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEE-------------------eCCEEEEEEcCCC
Q 013898 30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLR-------------------SGDLRFVFTAPYS 90 (434)
Q Consensus 30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~-------------------~G~i~~vl~~p~~ 90 (434)
=..++|+.|+|.|++++++||+++|||++..+...+.+. ...+++. .++..|+|..+..
T Consensus 25 ~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~--~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~ 102 (185)
T PLN03042 25 GYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMK--FSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWG 102 (185)
T ss_pred CcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCc--eEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCC
Confidence 367999999999999999999999999998875543322 2233332 2445778876543
Q ss_pred CCCCcccccCCCCCCCCCCChhHHhHHHHhcC--CceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEec
Q 013898 91 PSISDAADAGNSSASLPTFDHAACRSFAASHG--LAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLY 168 (434)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~hG--~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~ 168 (434)
... + ....+|....+ .|+.||||+|+|++++++++.++|+.+...|... ....+..|+++
T Consensus 103 ~~~----------~-------p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~-~~~~~~fi~DP 164 (185)
T PLN03042 103 TES----------D-------PEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDG-KMKGLAFIKDP 164 (185)
T ss_pred Ccc----------c-------ccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccC-CceeEEEEECC
Confidence 210 0 01123333332 4899999999999999999999999887666432 12446677888
Q ss_pred CCeEEEEeec
Q 013898 169 GDVVLRYVSY 178 (434)
Q Consensus 169 Gg~~~~fvd~ 178 (434)
.|..+.|++.
T Consensus 165 dG~~IEl~e~ 174 (185)
T PLN03042 165 DGYWIEIFDL 174 (185)
T ss_pred CCCEEEEEEC
Confidence 8888888874
No 32
>PRK11478 putative lyase; Provisional
Probab=99.19 E-value=3.6e-10 Score=96.87 Aligned_cols=101 Identities=17% Similarity=0.183 Sum_probs=67.1
Q ss_pred CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCC
Q 013898 28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLP 107 (434)
Q Consensus 28 ~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~ 107 (434)
+.+.+++||.+.|+|++++++||++.|||++......+.. ......+...|+..+.+.+...+.. .+
T Consensus 2 ~~i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~-~~~~~~~~~~~~~~l~l~~~~~~~~--~~---------- 68 (129)
T PRK11478 2 LGLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREAR-DSWKGDLALNGQYVIELFSFPFPPE--RP---------- 68 (129)
T ss_pred CCcceecEEEEEcCCHHHHHHHHHHHhCCEeccccccccc-ccceeeEecCCCcEEEEEEecCCCC--CC----------
Confidence 3578999999999999999999999999998643211110 0111122224566666654221110 00
Q ss_pred CCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCC
Q 013898 108 TFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSS 151 (434)
Q Consensus 108 ~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~ 151 (434)
...+..|+.||||+|+|+++++++++++|+++..
T Consensus 69 ----------~~~~~~g~~hi~f~v~d~~~~~~~l~~~G~~~~~ 102 (129)
T PRK11478 69 ----------SRPEACGLRHLAFSVDDIDAAVAHLESHNVKCEA 102 (129)
T ss_pred ----------CCCCCCceeEEEEEeCCHHHHHHHHHHcCCeeec
Confidence 0012347889999999999999999999998653
No 33
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.18 E-value=2.9e-10 Score=96.02 Aligned_cols=118 Identities=18% Similarity=0.291 Sum_probs=80.9
Q ss_pred eeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCC--CceEEEecccCCCCCCCchHHHHHhhc
Q 013898 209 LDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANND--EMVLLPMNEPVFGTKRKSQIQTYLEHN 286 (434)
Q Consensus 209 iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~--g~v~i~L~e~~~g~~~~s~i~~fl~~~ 286 (434)
|+|+++.|+|++++++||+++|||+..+....++. +....++..++ +...+.+..+.. ... ...
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~l~~~~~---~~~------~~~ 66 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEG-----KFTLVFLGYPDEDSEGVLELTYNWG---TEE------PYD 66 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCC-----ceEEEEecCCCCCCccEEEEEecCC---CCC------CcC
Confidence 68999999999999999999999998775432111 12223444444 455666655421 111 012
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEE
Q 013898 287 EGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQI 365 (434)
Q Consensus 287 ~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqi 365 (434)
.+.+++|++|.|+||++++++|+++ |+.++..| ... + ...+.+-+|++|+.+++
T Consensus 67 ~~~~~~~i~~~v~did~~~~~l~~~----G~~~~~~~-~~~--------~------------~~~~~~~~DpdG~~iE~ 120 (121)
T cd07233 67 NGNGFGHLAFAVDDVYAACERLEEM----GVEVTKPP-GDG--------G------------MKGIAFIKDPDGYWIEL 120 (121)
T ss_pred CCCCeEEEEEEeCCHHHHHHHHHHC----CCEEeeCC-ccC--------C------------CceEEEEECCCCCEEEe
Confidence 3557999999999999999999999 99999753 331 1 11244667788888875
No 34
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.17 E-value=7.4e-10 Score=93.50 Aligned_cols=102 Identities=21% Similarity=0.261 Sum_probs=68.2
Q ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCC
Q 013898 30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTF 109 (434)
Q Consensus 30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~ 109 (434)
+.+++||.+.|+|++++++||++.|||+.......+.. ......+...++..+.+....... ..+
T Consensus 1 ~~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~-~~~~~~~~~~~~~~i~l~~~~~~~------------~~~-- 65 (125)
T cd08352 1 LFGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPER-GSYKLDLLLNGGYQLELFSFPNPP------------ERP-- 65 (125)
T ss_pred CCccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCC-CcEEEEEecCCCcEEEEEEcCCCC------------CCC--
Confidence 36899999999999999999999999998765321111 111122222356666655422110 000
Q ss_pred ChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCc
Q 013898 110 DHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPV 154 (434)
Q Consensus 110 ~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~ 154 (434)
....+.|+.|++|+|+|++++++++++.|+++...|.
T Consensus 66 --------~~~~~~g~~h~~~~v~d~~~~~~~l~~~G~~~~~~~~ 102 (125)
T cd08352 66 --------SYPEACGLRHLAFSVEDIEAAVKHLKAKGVEVEPIRV 102 (125)
T ss_pred --------CCCcCCCceEEEEEeCCHHHHHHHHHHcCCccccccc
Confidence 0012357889999999999999999999998766553
No 35
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.16 E-value=4.1e-10 Score=98.01 Aligned_cols=117 Identities=22% Similarity=0.181 Sum_probs=80.2
Q ss_pred eeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcC--CCceEEEecccCCCCCCCchHHHHHh
Q 013898 207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANN--DEMVLLPMNEPVFGTKRKSQIQTYLE 284 (434)
Q Consensus 207 ~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~--~g~v~i~L~e~~~g~~~~s~i~~fl~ 284 (434)
.+|+|+++.|+|++++.+||+++|||+...... . ...++..+ .....+.|.... .
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~---~-------~~~~~~~~~~~~~~~i~l~~~~-----~-------- 58 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK---G-------RGAFLRAAGGGDHHNLFLIKTP-----A-------- 58 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec---C-------cEEEEECCCCCCCcEEEEecCC-----C--------
Confidence 579999999999999999999999999765421 0 11233333 233455554431 0
Q ss_pred hcCCCCceEEEEEeCCHHHHH---HHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCce
Q 013898 285 HNEGAGVQHLALVSEDIFRTL---REMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGT 361 (434)
Q Consensus 285 ~~~G~GvqHIAf~vdDI~~av---~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~ 361 (434)
...|++||||.|+|+.+.. ++|+++ |+++...| ... . ....-.+|-+|++|.
T Consensus 59 --~~~g~~hiaf~v~d~~~~~~~~~~l~~~----G~~~~~~~-~~~--------~----------~~~~~~~y~~DP~G~ 113 (134)
T cd08360 59 --PMAGFHHAAFEVGDIDEVMLGGNHMLRA----GYQTGWGP-GRH--------R----------IGSNYFWYFRDPWGG 113 (134)
T ss_pred --CCCcceEEEEEeCCHHHHHHHHHHHHHc----CCccccCC-CCc--------C----------CCccEEEEEECCCCC
Confidence 1468999999999998776 499998 99876543 211 0 001223688999999
Q ss_pred EEEEEccccC
Q 013898 362 LLQIFTKPVG 371 (434)
Q Consensus 362 llqifT~~~~ 371 (434)
++++++....
T Consensus 114 ~iEl~~~~~~ 123 (134)
T cd08360 114 EVEYGADMDY 123 (134)
T ss_pred EEEEEccccc
Confidence 9999986543
No 36
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.16 E-value=5.6e-10 Score=101.25 Aligned_cols=124 Identities=15% Similarity=0.218 Sum_probs=82.2
Q ss_pred cceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHH
Q 013898 204 YGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYL 283 (434)
Q Consensus 204 ~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl 283 (434)
+.+++|+|+++.|+|++++.+||+++|||+........ ... ....++........+.+.... .
T Consensus 2 ~~i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~--~~~---~~~~~~~~~~~~~~i~l~~~~-----~------- 64 (166)
T cd09014 2 VGVRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLD--NGK---EAGAWMSVSNKVHDVAYTRDP-----A------- 64 (166)
T ss_pred CCcceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecC--CCc---eEEEEEeCCCCceeEEEecCC-----C-------
Confidence 46889999999999999999999999999986543211 110 112333333333444442221 0
Q ss_pred hhcCCCCceEEEEEeCCH---HHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCc
Q 013898 284 EHNEGAGVQHLALVSEDI---FRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQG 360 (434)
Q Consensus 284 ~~~~G~GvqHIAf~vdDI---~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g 360 (434)
....+++||||.|+|+ ++.+++|+++ |++++..| ... + ....-.+|-.|++|
T Consensus 65 --~~~~~~~hiaf~v~~~~~l~~~~~~l~~~----Gv~i~~~p-~~~--------~----------~~~~~~~y~~DPdG 119 (166)
T cd09014 65 --GARGRLHHLAYALDTREDVLRAADIFLEN----GIFIEAGP-GKH--------G----------IQQTFFLYVYEPGG 119 (166)
T ss_pred --CCCCCceEEEEECCCHHHHHHHHHHHHHc----CCccccCC-ccc--------C----------CCCceEEEEECCCC
Confidence 0124699999999865 4778899999 99987543 221 1 01122468899999
Q ss_pred eEEEEEccc
Q 013898 361 TLLQIFTKP 369 (434)
Q Consensus 361 ~llqifT~~ 369 (434)
+++++++.+
T Consensus 120 ~~iEl~~~~ 128 (166)
T cd09014 120 NRVELFGGG 128 (166)
T ss_pred CEEEEEEcC
Confidence 999999983
No 37
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.13 E-value=4.9e-10 Score=100.26 Aligned_cols=123 Identities=18% Similarity=0.149 Sum_probs=79.1
Q ss_pred eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhh
Q 013898 206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH 285 (434)
Q Consensus 206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~ 285 (434)
-++|+||+++|+|++++.+||+++|||+.........+ ...+....++..+.....+.+....
T Consensus 7 ~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~i~~~~~~--------------- 69 (154)
T cd07237 7 DQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLP--PGPTARVTFLHCNGRHHSLALAEGP--------------- 69 (154)
T ss_pred CCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCC--CCCcceEEEEEeCCCCCCEEEEcCC---------------
Confidence 46899999999999999999999999997654221100 0011222233332222233332210
Q ss_pred cCCCCceEEEEEeCCHH---HHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceE
Q 013898 286 NEGAGVQHLALVSEDIF---RTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL 362 (434)
Q Consensus 286 ~~G~GvqHIAf~vdDI~---~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~l 362 (434)
.+.|++||||.|+|++ +++++|+++ |+++...| .. .+ ....-.+|-+|++|.+
T Consensus 70 -~~~g~~Hiaf~V~d~~~l~~~~~~L~~~----G~~v~~~~-~~--------~~----------~~~~~~~y~~DPdG~~ 125 (154)
T cd07237 70 -GPKRIHHLMLEVTSLDDVGRAYDRVRAR----GIPIAMTL-GR--------HT----------NDRMLSFYVRTPSGFA 125 (154)
T ss_pred -CCceeEEEEEEcCCHHHHHHHHHHHHHc----CCceeccC-Cc--------cC----------CCCcEEEEEECCCCcE
Confidence 2467999999998765 588999999 99988643 21 01 0111235778999999
Q ss_pred EEEEccc
Q 013898 363 LQIFTKP 369 (434)
Q Consensus 363 lqifT~~ 369 (434)
+++++..
T Consensus 126 iEl~~~~ 132 (154)
T cd07237 126 IEYGWGG 132 (154)
T ss_pred EEeccCc
Confidence 9998774
No 38
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.12 E-value=6.1e-10 Score=94.69 Aligned_cols=101 Identities=26% Similarity=0.454 Sum_probs=74.8
Q ss_pred eeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCC
Q 013898 209 LDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEG 288 (434)
Q Consensus 209 iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G 288 (434)
|+||++.|+|++++.+||+++|||+........+ ..+....++.. +...+.|..+.. ..+....+... .+
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~----~~~~~~~~~~~--~~~~l~l~~~~~---~~~~~~~~~~~-~~ 70 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPP----EQGVRVAFLGL--GNVQIELIEPLD---DDSPIAKFLEK-RG 70 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCc----ccccEEEEEEc--CCEEEEEEEECC---CCCcHHHHHhc-CC
Confidence 6899999999999999999999999986543210 11233344443 456777776642 23344445443 57
Q ss_pred CCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCC
Q 013898 289 AGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP 323 (434)
Q Consensus 289 ~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~p 323 (434)
.|++|+||.|+|+++++++|+++ |++++..|
T Consensus 71 ~g~~h~~f~v~d~~~~~~~l~~~----G~~~~~~~ 101 (128)
T cd07249 71 EGLHHIAFEVDDIDAALARLKAQ----GVRLLQEG 101 (128)
T ss_pred CceEEEEEEeCCHHHHHHHHHHC----CCeeeccC
Confidence 99999999999999999999999 99998743
No 39
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.09 E-value=1.5e-09 Score=91.68 Aligned_cols=100 Identities=17% Similarity=0.213 Sum_probs=65.7
Q ss_pred eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhh
Q 013898 206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH 285 (434)
Q Consensus 206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~ 285 (434)
+++|+||++.|+|++++++||+++|||+........+ .. .....+.. ++...+.|..... .... ...
T Consensus 1 ~~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~----~~-~~~~~~~~-~~~~~i~l~~~~~--~~~~-----~~~ 67 (125)
T cd08352 1 LFGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPE----RG-SYKLDLLL-NGGYQLELFSFPN--PPER-----PSY 67 (125)
T ss_pred CCccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCC----CC-cEEEEEec-CCCcEEEEEEcCC--CCCC-----CCC
Confidence 4689999999999999999999999999765422111 01 11122222 2334455443221 0000 011
Q ss_pred cCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccC
Q 013898 286 NEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPS 322 (434)
Q Consensus 286 ~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~ 322 (434)
..+.|++|+||.|+|++++.++|+++ |+.+...
T Consensus 68 ~~~~g~~h~~~~v~d~~~~~~~l~~~----G~~~~~~ 100 (125)
T cd08352 68 PEACGLRHLAFSVEDIEAAVKHLKAK----GVEVEPI 100 (125)
T ss_pred CcCCCceEEEEEeCCHHHHHHHHHHc----CCccccc
Confidence 13568999999999999999999999 9988764
No 40
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.08 E-value=1.1e-09 Score=92.75 Aligned_cols=98 Identities=16% Similarity=0.231 Sum_probs=66.5
Q ss_pred eeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcC
Q 013898 208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNE 287 (434)
Q Consensus 208 ~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~ 287 (434)
+++|+++.|+|++++++||+++|||+.......+ ..+....++..+ +...+.|.+... ..... ...+
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~-----~~~~ 67 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNP-----RKGFESYFLSFD-DGARLELMTRPD--IAPSP-----NEGE 67 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCC-----CCCceEEEEecC-CCcEEEEEcCcc--cCCCc-----ccCC
Confidence 4789999999999999999999999975433211 122344445433 345667654321 01110 1123
Q ss_pred CCCceEEEEEeC---CHHHHHHHHHHhcCCCCceeccC
Q 013898 288 GAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPS 322 (434)
Q Consensus 288 G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~~ 322 (434)
..|++||||.|+ |+++.+++|+++ |++++..
T Consensus 68 ~~g~~hi~f~v~~~~~v~~~~~~l~~~----g~~~~~~ 101 (125)
T cd07241 68 RTGWAHLAFSVGSKEAVDELTERLRAD----GYLIIGE 101 (125)
T ss_pred CCceEEEEEECCCHHHHHHHHHHHHHC----CCEEEeC
Confidence 467999999995 589999999999 9998864
No 41
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.08 E-value=1.9e-09 Score=92.63 Aligned_cols=117 Identities=13% Similarity=0.148 Sum_probs=81.0
Q ss_pred ceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHh
Q 013898 205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLE 284 (434)
Q Consensus 205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~ 284 (434)
.+.+|+||++.|+|++++.+||+++|||++..... . ..++..++....+.+...
T Consensus 3 ~~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~----------~-~~~l~~~~~~~~i~l~~~--------------- 56 (124)
T cd08361 3 ELQDIAYVRLGTRDLAGATRFATDILGLQVAERTA----------K-ATYFRSDARDHTLVYIEG--------------- 56 (124)
T ss_pred eEEEeeEEEEeeCCHHHHHHHHHhccCceeccCCC----------C-eEEEEcCCccEEEEEEeC---------------
Confidence 47899999999999999999999999999864321 0 123443333344554322
Q ss_pred hcCCCCceEEEEEeCC---HHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCce
Q 013898 285 HNEGAGVQHLALVSED---IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGT 361 (434)
Q Consensus 285 ~~~G~GvqHIAf~vdD---I~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~ 361 (434)
.++.+|+||.|+| ++++.++|+++ |+++...| .. ..+.. -....+|-+|++|.
T Consensus 57 ---~~~~~~iaf~v~~~~dv~~~~~~l~~~----G~~~~~~~-~~-----~~~~~-----------~~~~~~~f~DPdG~ 112 (124)
T cd08361 57 ---DPAEQASGFELRDDDALESAATELEQY----GHEVRRGT-AE-----ECELR-----------KVKAFIAFRDPSGN 112 (124)
T ss_pred ---CCceEEEEEEECCHHHHHHHHHHHHHc----CCceEEcC-HH-----HhhcC-----------CcceEEEEECcCCC
Confidence 1446899999986 99999999999 99887543 11 00000 00124578999999
Q ss_pred EEEEEccccC
Q 013898 362 LLQIFTKPVG 371 (434)
Q Consensus 362 llqifT~~~~ 371 (434)
.+.+|..|..
T Consensus 113 ~iE~~~~~~~ 122 (124)
T cd08361 113 SIELVVRPSH 122 (124)
T ss_pred EEEEEEeeec
Confidence 9999988753
No 42
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.08 E-value=1e-09 Score=98.64 Aligned_cols=117 Identities=16% Similarity=0.116 Sum_probs=79.5
Q ss_pred eeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcC-CCceEEEecccCCCCCCCchHHHHHhhc
Q 013898 208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANN-DEMVLLPMNEPVFGTKRKSQIQTYLEHN 286 (434)
Q Consensus 208 ~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~-~g~v~i~L~e~~~g~~~~s~i~~fl~~~ 286 (434)
+|+||++.|+|++++.+||+++|||+...... . . ..+...+ .....|.|...... .. ...
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~----~-----~-~~~~~~~~~~~~~l~l~~~~~~--~~-------~~~ 61 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG----D-----R-VRLEEGGGGPGAVVDVLEEPDQ--PR-------GRP 61 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC----C-----E-EEEEecCCCCCCEEEEEeCCCC--CC-------Ccc
Confidence 47999999999999999999999999876532 0 1 1122221 12456777654210 00 011
Q ss_pred CCCCceEEEEEeCC---HHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEE
Q 013898 287 EGAGVQHLALVSED---IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLL 363 (434)
Q Consensus 287 ~G~GvqHIAf~vdD---I~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~ll 363 (434)
+..|++||||.|+| ++++.++|+++ |+.+.. + ..+ + ....+|-+|++|.++
T Consensus 62 ~~~~l~Hiaf~v~d~~dvd~~~~~L~~~----Gv~~~~-~-~~~--------~------------~~~s~yf~DPdG~~i 115 (157)
T cd08347 62 GAGTVHHVAFRVPDDEELEAWKERLEAL----GLPVSG-I-VDR--------F------------YFKSLYFREPGGILF 115 (157)
T ss_pred cCCceEEEEEECCCHHHHHHHHHHHHHC----CCCccc-c-ccc--------c------------cEEEEEEECCCCcEE
Confidence 23569999999998 89999999999 987542 2 211 0 012468899999999
Q ss_pred EEEccc
Q 013898 364 QIFTKP 369 (434)
Q Consensus 364 qifT~~ 369 (434)
++++.+
T Consensus 116 El~~~~ 121 (157)
T cd08347 116 EIATDG 121 (157)
T ss_pred EEEECC
Confidence 999865
No 43
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.08 E-value=1.5e-09 Score=96.40 Aligned_cols=127 Identities=17% Similarity=0.273 Sum_probs=81.6
Q ss_pred ceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCC--CceEEEecccCCCCCCCchHHHH
Q 013898 205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANND--EMVLLPMNEPVFGTKRKSQIQTY 282 (434)
Q Consensus 205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~--g~v~i~L~e~~~g~~~~s~i~~f 282 (434)
..++|+|+.+.|+|++++..||+++|||+.....+. +.. +.....+..++ ....+.+..... ..
T Consensus 14 ~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~l~~~~~~~---~~------ 79 (150)
T TIGR00068 14 KKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDF--PEM---KFSLAFLGYGDETSAAVIELTHNWG---TE------ 79 (150)
T ss_pred CCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEecc--CCC---ceEEEEecCCCCCCccEEEEeecCC---CC------
Confidence 568999999999999999999999999998654321 110 11122222221 223444433221 00
Q ss_pred HhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceE
Q 013898 283 LEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL 362 (434)
Q Consensus 283 l~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~l 362 (434)
....+.|++|++|.|+||++++++|+++ |++++..| ... . . ....+.|-+|++|+.
T Consensus 80 -~~~~~~g~~hi~f~v~dld~~~~~l~~~----G~~~~~~~-~~~-~------~-----------~~~~~~~~~DPdG~~ 135 (150)
T TIGR00068 80 -KYDLGNGFGHIAIGVDDVYKACERVRAL----GGNVVREP-GPV-K------G-----------GTTVIAFVEDPDGYK 135 (150)
T ss_pred -cccCCCceeEEEEecCCHHHHHHHHHHc----CCccccCC-ccc-C------C-----------CceEEEEEECCCCCE
Confidence 0123568999999999999999999999 99988643 110 0 0 011244568888988
Q ss_pred EEEEccc
Q 013898 363 LQIFTKP 369 (434)
Q Consensus 363 lqifT~~ 369 (434)
+++++..
T Consensus 136 iel~~~~ 142 (150)
T TIGR00068 136 IELIQRK 142 (150)
T ss_pred EEEEECC
Confidence 8777654
No 44
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.07 E-value=1.6e-09 Score=97.60 Aligned_cols=121 Identities=23% Similarity=0.306 Sum_probs=77.4
Q ss_pred eeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhc
Q 013898 207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHN 286 (434)
Q Consensus 207 ~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~ 286 (434)
++|+||++.|+|++++++||+++|||+.......+ .+ .....++........+.+.. .
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~-~~----~~~~~~l~~~~~~~~i~l~~-----------------~ 59 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDD-DG----TTWAAWLHRKGGVHDTALTG-----------------G 59 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccC-CC----cEEEEEEecCCCcceEEEec-----------------C
Confidence 57999999999999999999999999976433211 11 01112232222222233221 1
Q ss_pred CCCCceEEEEEeCC---HHHHHHHHHHhcCCCCcee-ccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceE
Q 013898 287 EGAGVQHLALVSED---IFRTLREMRKRSGVGGFEF-MPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL 362 (434)
Q Consensus 287 ~G~GvqHIAf~vdD---I~~av~~L~~~~~~~Gv~f-l~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~l 362 (434)
.++|++|+||.|+| +.+++++|+++ |+.. +..+|. +.+ ......+|-+|++|.+
T Consensus 60 ~~~~~~Hiaf~v~~~~~v~~~~~~L~~~----G~~~~~~~~p~--------~~g----------~~~~~~~y~~DPdG~~ 117 (161)
T cd07256 60 NGPRLHHVAFWVPEPHNIIRTCDLLAAA----GYSDRIERGPG--------RHG----------ISNAFFLYLRDPDGHR 117 (161)
T ss_pred CCCceeEEEEEcCCHHHHHHHHHHHHHc----CCCcccccCCC--------ccC----------CCCceEEEEECCCCCe
Confidence 35689999999986 77788899998 9863 211111 011 0112246788999999
Q ss_pred EEEEccccC
Q 013898 363 LQIFTKPVG 371 (434)
Q Consensus 363 lqifT~~~~ 371 (434)
+++++.+..
T Consensus 118 iEl~~~~~~ 126 (161)
T cd07256 118 IEIYTGDYY 126 (161)
T ss_pred EEEeecCce
Confidence 999987754
No 45
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.07 E-value=3.8e-09 Score=92.59 Aligned_cols=115 Identities=10% Similarity=0.049 Sum_probs=77.3
Q ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCC
Q 013898 30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTF 109 (434)
Q Consensus 30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~ 109 (434)
+.+++||.+.|+|++++.+||++.|||+++.+.+ ....++.++..+.+..+... +
T Consensus 2 i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~--------~~~~~~~~g~~l~l~~~~~~-----~------------ 56 (139)
T PRK04101 2 LKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR--------KTAYFDLNGLWIALNEEKDI-----P------------ 56 (139)
T ss_pred CCcEEEEEEEecCHHHHHHHHHhccCCEEEeecC--------eeEEEecCCeEEEeeccCCC-----C------------
Confidence 6789999999999999999999999999876522 23445667777776532110 0
Q ss_pred ChhHHhHHHHhcCCceeEEEEEec--CHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEee
Q 013898 110 DHAACRSFAASHGLAARSIAVEVE--DADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS 177 (434)
Q Consensus 110 ~~~~~~~~l~~hG~gv~~Iaf~V~--Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd 177 (434)
. ...+.+..|+||.|+ |+++++++++++|+++...|...........++++.|..+++..
T Consensus 57 ------~--~~~~~~~~hiaf~v~~~dv~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~DPdGn~iEl~~ 118 (139)
T PRK04101 57 ------R--NEIHQSYTHIAFSIEEEDFDHWYQRLKENDVNILPGRERDERDKKSIYFTDPDGHKFEFHT 118 (139)
T ss_pred ------C--ccCCCCeeEEEEEecHHHHHHHHHHHHHCCceEcCCccccCCCceEEEEECCCCCEEEEEe
Confidence 0 011246789999998 99999999999999876655332112223334444554555443
No 46
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.06 E-value=2.8e-09 Score=92.55 Aligned_cols=122 Identities=16% Similarity=0.146 Sum_probs=81.0
Q ss_pred eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhh
Q 013898 206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH 285 (434)
Q Consensus 206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~ 285 (434)
+.+|+|+++.|+|++++++||+++|||++..+...... ......+... +...+.+..+.. .
T Consensus 2 i~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~----~~~~~~~~~~--~~~~i~l~~~~~----~--------- 62 (131)
T cd08364 2 IEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTF----SLSKEKFFLI--GGLWIAIMEGDS----L--------- 62 (131)
T ss_pred cccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccc----cccceeEEEc--CCeEEEEecCCC----C---------
Confidence 56899999999999999999999999987654321100 0001111212 234566654321 1
Q ss_pred cCCCCceEEEEEeC--CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEE
Q 013898 286 NEGAGVQHLALVSE--DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLL 363 (434)
Q Consensus 286 ~~G~GvqHIAf~vd--DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~ll 363 (434)
...+++||||.|+ |+++..++|+++ |+++... ..... + ...-+|-+|++|.++
T Consensus 63 -~~~~~~Hiaf~v~~~~ld~~~~~l~~~----gv~~~~~--~~~~~------~------------~g~~~yf~DPdG~~i 117 (131)
T cd08364 63 -QERTYNHIAFKISDSDVDEYTERIKAL----GVEMKPP--RPRVQ------G------------EGRSIYFYDFDNHLF 117 (131)
T ss_pred -CCCCceEEEEEcCHHHHHHHHHHHHHC----CCEEecC--Ccccc------C------------CceEEEEECCCCCEE
Confidence 1246999999998 799999999999 9987642 22110 0 012467899999999
Q ss_pred EEEccccC
Q 013898 364 QIFTKPVG 371 (434)
Q Consensus 364 qifT~~~~ 371 (434)
++++..+-
T Consensus 118 El~~~~~~ 125 (131)
T cd08364 118 ELHTGTLE 125 (131)
T ss_pred EEecCCHH
Confidence 99987654
No 47
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.06 E-value=6.2e-09 Score=93.99 Aligned_cols=129 Identities=14% Similarity=0.075 Sum_probs=84.1
Q ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEec--CCC------------C--ceeEEEEEEEeC-CEEEEEEcCCCCC
Q 013898 30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSD--LST------------G--NTVHASYLLRSG-DLRFVFTAPYSPS 92 (434)
Q Consensus 30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~--~~~------------g--~~~~~~~~l~~G-~i~~vl~~p~~~~ 92 (434)
.++++||.+.|+|++++++||+++|||+.+.+.. .+. + ........++.+ +..|.|.+...+.
T Consensus 2 ~~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~~~~ 81 (162)
T TIGR03645 2 PRTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFKNQE 81 (162)
T ss_pred CceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEeccCCC
Confidence 3689999999999999999999999998764210 000 0 011334445533 4567777654322
Q ss_pred CCcccccCCCCCCCCCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCC-ccc-cC--ceEEEEEEec
Q 013898 93 ISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPP-VIL-DN--LAVIAEVQLY 168 (434)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p-~~~-~~--~~~~~~i~~~ 168 (434)
. | ...+ ..++.|..|+||.|+|+++++++++++|++.+..+ ... .+ ......++++
T Consensus 82 ~---~----------------~~~~-~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DP 141 (162)
T TIGR03645 82 N---P----------------EDNF-EYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDP 141 (162)
T ss_pred C---C----------------Cccc-ccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECC
Confidence 1 0 0111 12457899999999999999999999998764432 211 11 1345567777
Q ss_pred CCeEEEEeec
Q 013898 169 GDVVLRYVSY 178 (434)
Q Consensus 169 Gg~~~~fvd~ 178 (434)
.|..+.++++
T Consensus 142 dG~~iEl~~~ 151 (162)
T TIGR03645 142 FGNILEIYSH 151 (162)
T ss_pred CCCEEEEEEc
Confidence 7878888875
No 48
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.05 E-value=2.3e-09 Score=91.19 Aligned_cols=113 Identities=15% Similarity=0.173 Sum_probs=76.4
Q ss_pred eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcC--CCceEEEecccCCCCCCCchHHHHH
Q 013898 206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANN--DEMVLLPMNEPVFGTKRKSQIQTYL 283 (434)
Q Consensus 206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~--~g~v~i~L~e~~~g~~~~s~i~~fl 283 (434)
+.+|+|+++.|+|++++.+||+++|||+...... .. ...+... .+...+.+...
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~~------~~~~~~~~~~~~~~~~l~~~-------------- 57 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD----QG------RVYLKAWDEFDHHSIVLREA-------------- 57 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC----Cc------eEEEEccCCCcccEEEeccC--------------
Confidence 5789999999999999999999999999765421 00 1122221 12233333211
Q ss_pred hhcCCCCceEEEEEeC---CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCc
Q 013898 284 EHNEGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQG 360 (434)
Q Consensus 284 ~~~~G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g 360 (434)
...|++|+||.|+ |+++..++|+++ |+++...|+... .+ --..+|-+|++|
T Consensus 58 ---~~~~~~hiaf~v~~~~dv~~~~~~l~~~----G~~~~~~~~~~~-------~~------------~~~~~~~~DPdG 111 (122)
T cd07265 58 ---DTAGLDFMGFKVLDDADLEKLEARLQAY----GVAVERIPAGEL-------PG------------VGRRVRFQLPSG 111 (122)
T ss_pred ---CCCCeeEEEEEeCCHHHHHHHHHHHHHC----CCcEEEcccCCC-------CC------------CceEEEEECCCC
Confidence 2357999999997 899999999999 999876541110 00 001357789999
Q ss_pred eEEEEEcc
Q 013898 361 TLLQIFTK 368 (434)
Q Consensus 361 ~llqifT~ 368 (434)
..+++|..
T Consensus 112 ~~iE~~~~ 119 (122)
T cd07265 112 HTMELYAD 119 (122)
T ss_pred CEEEEEEe
Confidence 99988764
No 49
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.05 E-value=3.9e-09 Score=89.91 Aligned_cols=115 Identities=12% Similarity=0.117 Sum_probs=79.5
Q ss_pred eeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhc
Q 013898 207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHN 286 (434)
Q Consensus 207 ~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~ 286 (434)
++|.||++.|+|++++.+||+++|||+..+... . ...++..++....+.|....
T Consensus 1 ~~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~----~------~~~~~~~~~~~~~~~l~~~~---------------- 54 (120)
T cd07252 1 KSLGYLGVESSDLDAWRRFATDVLGLQVGDRPE----D------GALYLRMDDRAWRIAVHPGE---------------- 54 (120)
T ss_pred CcccEEEEEeCCHHHHHHHHHhccCceeccCCC----C------CeEEEEccCCceEEEEEeCC----------------
Confidence 368899999999999999999999999764311 0 11234444344566664321
Q ss_pred CCCCceEEEEEeC---CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEE
Q 013898 287 EGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLL 363 (434)
Q Consensus 287 ~G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~ll 363 (434)
..+..|+||.++ |+++.+++|+++ |+++...|+... ..+ + -...++-+|++|..+
T Consensus 55 -~~~~~~~~f~v~~~~dl~~~~~~l~~~----Gv~~~~~~~~~~----~~~-~------------~~~~~~~~DPdG~~i 112 (120)
T cd07252 55 -ADDLAYAGWEVADEAALDALAARLRAA----GVAVEEGSAELA----AER-G------------VEGLIRFADPDGNRH 112 (120)
T ss_pred -CCceeEEEEEECCHHHHHHHHHHHHHc----CCeEEEcCHHHH----hhC-C------------CcEEEEEECCCCCEE
Confidence 246889999997 488999999999 999886541110 000 0 012567889999999
Q ss_pred EEEccc
Q 013898 364 QIFTKP 369 (434)
Q Consensus 364 qifT~~ 369 (434)
++++-+
T Consensus 113 E~~~~~ 118 (120)
T cd07252 113 ELFWGP 118 (120)
T ss_pred EEEecc
Confidence 999765
No 50
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.04 E-value=2.6e-09 Score=91.35 Aligned_cols=121 Identities=25% Similarity=0.331 Sum_probs=82.2
Q ss_pred eeeeeeEecCCHHHHHHHHHHhh---CCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHh
Q 013898 208 RLDHAVGNVPELAPAVAYVKSFT---GFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLE 284 (434)
Q Consensus 208 ~iDHv~i~V~dl~~~~~fY~~vL---Gf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~ 284 (434)
+|+||++.|+|++++.+||+++| ||+...... . . . .+ ... .+...|.|..+.. ..+. +..
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~-~-----~-~~-~~~-~~~~~i~l~~~~~---~~~~---~~~ 63 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--D-G-----R-SW-RAG-DGGTYLVLQQADG---ESAG---RHD 63 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--c-C-----c-eE-Eec-CCceEEEEEeccc---CCCc---ccc
Confidence 58999999999999999999999 999876531 1 0 1 11 111 3457777776642 1111 122
Q ss_pred hcCCCCceEEEEEeC---CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCce
Q 013898 285 HNEGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGT 361 (434)
Q Consensus 285 ~~~G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~ 361 (434)
..+.|++|+||.|+ ||+++.++|+++ |+++...| ...+ .. -.....+|-+|++|.
T Consensus 64 -~~~~g~~hia~~v~~~~d~~~~~~~l~~~----g~~~~~~~-~~~~------~~----------~~~~~~~~~~DpdG~ 121 (128)
T cd07242 64 -RRNPGLHHLAFRAPSREAVDELYARLAKR----GAEILYAP-REPY------AG----------GPGYYALFFEDPDGI 121 (128)
T ss_pred -cCCcCeeEEEEEcCCHHHHHHHHHHHHHc----CCeEecCC-cccc------cC----------CCcEEEEEEECCCCc
Confidence 24678999999997 488999999999 99998754 3211 00 001124567788999
Q ss_pred EEEEEc
Q 013898 362 LLQIFT 367 (434)
Q Consensus 362 llqifT 367 (434)
++++++
T Consensus 122 ~ie~~~ 127 (128)
T cd07242 122 RLELVA 127 (128)
T ss_pred EEEEEe
Confidence 998876
No 51
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.04 E-value=1.4e-09 Score=91.87 Aligned_cols=107 Identities=21% Similarity=0.246 Sum_probs=70.9
Q ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCCh
Q 013898 32 RFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDH 111 (434)
Q Consensus 32 ~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~ 111 (434)
+|+||.++|+|++++.+||++.|||+++................++.++..+.+.....+... .
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------~ 64 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEGHIELFLNPSPPPR----------------A 64 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSSCEEEEEEESSSSS----------------S
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccccceeeeeecccccc----------------c
Confidence 689999999999999999999999999987652112234556777776655544432221100 0
Q ss_pred hHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCcc
Q 013898 112 AACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVI 155 (434)
Q Consensus 112 ~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~ 155 (434)
. ...+...++.++.++++.++|++++++++++.|+++...|..
T Consensus 65 ~-~~~~~~~~~~~i~~~~~~~~dl~~~~~~l~~~g~~~~~~~~~ 107 (128)
T PF00903_consen 65 S-GHSFPEHGGHHIAFLAFDVDDLDAAYERLKAQGVEIVEEPDR 107 (128)
T ss_dssp E-EEHHHSHTSEEEEEEESSHHHHHHHHHHHHHTTGEEEEEEEE
T ss_pred c-ccccccccceeEEEEeccHHHHHHHHHHHhhcCccEEecCCC
Confidence 0 011111133466667777778999999999999887766643
No 52
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.03 E-value=3.1e-09 Score=94.09 Aligned_cols=113 Identities=17% Similarity=0.232 Sum_probs=76.7
Q ss_pred eeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcC
Q 013898 208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNE 287 (434)
Q Consensus 208 ~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~ 287 (434)
+++|+.+.|+|++++.+||+++|||+...... -...++..+.....+.+... .
T Consensus 4 ~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~----------~~~~~l~~~~~~~~~~l~~~-----------------~ 56 (144)
T cd07239 4 KISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG----------DQMAFLRCNSDHHSIAIARG-----------------P 56 (144)
T ss_pred eeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC----------CeEEEEECCCCcceEEEccC-----------------C
Confidence 79999999999999999999999999753211 01123443333344554322 2
Q ss_pred CCCceEEEEEeCCHHHHH---HHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEE
Q 013898 288 GAGVQHLALVSEDIFRTL---REMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQ 364 (434)
Q Consensus 288 G~GvqHIAf~vdDI~~av---~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llq 364 (434)
..+++|+||.|+|+.+.. ++|+++ |++++..| .. .+ ......+|-+|++|.+++
T Consensus 57 ~~~~~hiaf~v~d~~~l~~~~~~l~~~----Gi~~~~~~-~~--------~~----------~~~~~~~yf~DPdG~~iE 113 (144)
T cd07239 57 HPSLNHVAFEMPSIDEVMRGIGRMIDK----GIDILWGP-GR--------HG----------PGDNTFAYFLDPGGFVIE 113 (144)
T ss_pred CCceEEEEEECCCHHHHHHHHHHHHHc----CCceeeCC-cc--------cC----------CCCCEEEEEECCCCcEEE
Confidence 357999999999987765 799999 99988643 21 00 001124678888998888
Q ss_pred EEcccc
Q 013898 365 IFTKPV 370 (434)
Q Consensus 365 ifT~~~ 370 (434)
+++...
T Consensus 114 ~~~~~~ 119 (144)
T cd07239 114 YTSELE 119 (144)
T ss_pred eccCce
Confidence 776643
No 53
>PLN02300 lactoylglutathione lyase
Probab=99.01 E-value=7.1e-09 Score=102.18 Aligned_cols=131 Identities=16% Similarity=0.246 Sum_probs=86.9
Q ss_pred cceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCC--CceEEEecccCCCCCCCchHHH
Q 013898 204 YGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANND--EMVLLPMNEPVFGTKRKSQIQT 281 (434)
Q Consensus 204 ~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~--g~v~i~L~e~~~g~~~~s~i~~ 281 (434)
..+++|+|+++.|+|++++++||+++|||+........+. +....++..++ ..+.+.+..... . ..
T Consensus 20 ~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~-----~~~~~~l~~g~~~~~~~lel~~~~~-~-~~----- 87 (286)
T PLN02300 20 KDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEE-----KYTNAFLGYGPEDSNFVVELTYNYG-V-DK----- 87 (286)
T ss_pred cccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCC-----cEEEEEEccCCCCCceEEEEeccCC-C-Cc-----
Confidence 3589999999999999999999999999998754321111 12122333222 234555543210 0 00
Q ss_pred HHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCce
Q 013898 282 YLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGT 361 (434)
Q Consensus 282 fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~ 361 (434)
...+.|++|+||.|+|+++++++|+++ |++++..| ... . -+ ...+.|-+|++|+
T Consensus 88 ---~~~~~g~~hia~~v~dvd~~~~~l~~~----G~~i~~~~-~~~-~-----~g------------~~~~~~~~DPdG~ 141 (286)
T PLN02300 88 ---YDIGTGFGHFGIAVEDVAKTVELVKAK----GGKVTREP-GPV-K-----GG------------KSVIAFVKDPDGY 141 (286)
T ss_pred ---cccCCCccEEEEEeCCHHHHHHHHHHC----CCeeecCC-ccc-C-----CC------------ceEEEEEECCCCC
Confidence 113578999999999999999999999 99988643 221 0 00 1124566889999
Q ss_pred EEEEEccccCC
Q 013898 362 LLQIFTKPVGD 372 (434)
Q Consensus 362 llqifT~~~~~ 372 (434)
.+.++.++...
T Consensus 142 ~iEl~~~~~~~ 152 (286)
T PLN02300 142 KFELIQRGPTP 152 (286)
T ss_pred EEEEEeCCCCC
Confidence 99998887554
No 54
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.01 E-value=7.6e-09 Score=87.22 Aligned_cols=97 Identities=19% Similarity=0.243 Sum_probs=67.2
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeC----CEEEEEEcCCCCCCCcccccCCCCCCCCC
Q 013898 33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG----DLRFVFTAPYSPSISDAADAGNSSASLPT 108 (434)
Q Consensus 33 l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G----~i~~vl~~p~~~~~~~~~~~~~~~~~~~~ 108 (434)
++||.+.|+|++++.+||++.|||+.......+++ ......++.+ ...+.+..+....
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~---------------- 62 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEG--KFTLVFLGYPDEDSEGVLELTYNWGTE---------------- 62 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCC--ceEEEEecCCCCCCccEEEEEecCCCC----------------
Confidence 58999999999999999999999998876432221 1222334432 3455554422110
Q ss_pred CChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCcc
Q 013898 109 FDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVI 155 (434)
Q Consensus 109 ~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~ 155 (434)
.. ...+.++.+++|+|+|+++++++++++|+++..+|..
T Consensus 63 ------~~--~~~~~~~~~i~~~v~did~~~~~l~~~G~~~~~~~~~ 101 (121)
T cd07233 63 ------EP--YDNGNGFGHLAFAVDDVYAACERLEEMGVEVTKPPGD 101 (121)
T ss_pred ------CC--cCCCCCeEEEEEEeCCHHHHHHHHHHCCCEEeeCCcc
Confidence 00 0233478899999999999999999999998776643
No 55
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=98.99 E-value=4.5e-09 Score=92.12 Aligned_cols=121 Identities=13% Similarity=0.219 Sum_probs=82.9
Q ss_pred eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhh
Q 013898 206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH 285 (434)
Q Consensus 206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~ 285 (434)
+++|+|+++.|+|++++.+||+++|||++..... ....+.. +...+.+..+.. ... .
T Consensus 2 i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~-----------~~~~~~~--~g~~l~l~~~~~--~~~--------~ 58 (139)
T PRK04101 2 LKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR-----------KTAYFDL--NGLWIALNEEKD--IPR--------N 58 (139)
T ss_pred CCcEEEEEEEecCHHHHHHHHHhccCCEEEeecC-----------eeEEEec--CCeEEEeeccCC--CCC--------c
Confidence 6789999999999999999999999999764311 0111222 234555543311 000 1
Q ss_pred cCCCCceEEEEEeC--CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEE
Q 013898 286 NEGAGVQHLALVSE--DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLL 363 (434)
Q Consensus 286 ~~G~GvqHIAf~vd--DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~ll 363 (434)
..+.|++|+||.++ |+++++++|+++ |++++..| ... . .....++-.|++|+++
T Consensus 59 ~~~~~~~hiaf~v~~~dv~~~~~~l~~~----G~~i~~~~-~~~--------~-----------~~~~~~~~~DPdGn~i 114 (139)
T PRK04101 59 EIHQSYTHIAFSIEEEDFDHWYQRLKEN----DVNILPGR-ERD--------E-----------RDKKSIYFTDPDGHKF 114 (139)
T ss_pred cCCCCeeEEEEEecHHHHHHHHHHHHHC----CceEcCCc-ccc--------C-----------CCceEEEEECCCCCEE
Confidence 12456899999998 999999999999 99987543 210 0 1234667889999999
Q ss_pred EEEccccCCC
Q 013898 364 QIFTKPVGDR 373 (434)
Q Consensus 364 qifT~~~~~r 373 (434)
++.+--+.|+
T Consensus 115 El~~~~~~~~ 124 (139)
T PRK04101 115 EFHTGTLQDR 124 (139)
T ss_pred EEEeCCHHHH
Confidence 9987665443
No 56
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=98.99 E-value=2.3e-08 Score=88.76 Aligned_cols=125 Identities=20% Similarity=0.199 Sum_probs=81.4
Q ss_pred CCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC----EEEEEEcCCCCCCCcccccCCC
Q 013898 27 RFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD----LRFVFTAPYSPSISDAADAGNS 102 (434)
Q Consensus 27 ~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~----i~~vl~~p~~~~~~~~~~~~~~ 102 (434)
....++++||.|.|+|++++.+||++.|||+++.+...+.. ......+..++ ..+.+.......
T Consensus 12 ~~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~---------- 79 (150)
T TIGR00068 12 KTKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEM--KFSLAFLGYGDETSAAVIELTHNWGTE---------- 79 (150)
T ss_pred ccCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCC--ceEEEEecCCCCCCccEEEEeecCCCC----------
Confidence 34678999999999999999999999999998765432221 11223333221 223332211100
Q ss_pred CCCCCCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccC-ceEEEEEEecCCeEEEEeec
Q 013898 103 SASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDN-LAVIAEVQLYGDVVLRYVSY 178 (434)
Q Consensus 103 ~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~-~~~~~~i~~~Gg~~~~fvd~ 178 (434)
. ...+.++.|++|.|+|++++++++.++|++++.+|..... ......++.+.|..+.+++.
T Consensus 80 -------------~--~~~~~g~~hi~f~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~ 141 (150)
T TIGR00068 80 -------------K--YDLGNGFGHIAIGVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQR 141 (150)
T ss_pred -------------c--ccCCCceeEEEEecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEC
Confidence 0 1234578899999999999999999999998776632222 22344456777777777764
No 57
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.98 E-value=9e-09 Score=87.41 Aligned_cols=103 Identities=19% Similarity=0.199 Sum_probs=66.7
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChh
Q 013898 33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHA 112 (434)
Q Consensus 33 l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~ 112 (434)
+.||.|+|+|++++.+||+++|||++..... +. ....+..++..+.+........ . .+. .
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~----------~-~~~---~ 60 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHE--SG----DYGELETGETTLAFASHDLAES----------N-LKG---G 60 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CC----cEEEecCCcEEEEEEccccccc----------c-ccc---C
Confidence 4699999999999999999999999875432 11 1223456776666654221100 0 000 0
Q ss_pred HHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccc
Q 013898 113 ACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVIL 156 (434)
Q Consensus 113 ~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~ 156 (434)
........|+.+ .+++|+|+|+++++++++++|++.+.+|...
T Consensus 61 ~~~~~~~~~~~~-~~~~~~v~di~~~~~~l~~~G~~~~~~~~~~ 103 (125)
T cd07264 61 FVKADPAQPPAG-FEIAFVTDDVAAAFARAVEAGAVLVSEPKEK 103 (125)
T ss_pred ccCCccccCCCc-EEEEEEcCCHHHHHHHHHHcCCEeccCCccC
Confidence 000111234444 5899999999999999999999987776543
No 58
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=98.98 E-value=1.1e-08 Score=87.58 Aligned_cols=95 Identities=21% Similarity=0.287 Sum_probs=69.7
Q ss_pred eEEEEEEEeCCHHHHHHHHHHhc---CCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCC
Q 013898 32 RFHHVEFWCTDATNTARRFSWGL---GMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPT 108 (434)
Q Consensus 32 ~l~HI~~~V~da~~a~~fy~~~l---Gf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~ 108 (434)
+|+||.+.|+|++++++||++.| ||+++.+.+ .+ ..+....++..+.|..+....
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~~----~~~~~~~~~~~i~l~~~~~~~---------------- 58 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--DG----RSWRAGDGGTYLVLQQADGES---------------- 58 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--cC----ceEEecCCceEEEEEecccCC----------------
Confidence 58999999999999999999999 999887632 11 112111577888887653321
Q ss_pred CChhHHhHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCCCCCCc
Q 013898 109 FDHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPV 154 (434)
Q Consensus 109 ~~~~~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p~ 154 (434)
+ .....++.++.|+||.|+| ++++++++.++|+++...|.
T Consensus 59 ---~---~~~~~~~~g~~hia~~v~~~~d~~~~~~~l~~~g~~~~~~~~ 101 (128)
T cd07242 59 ---A---GRHDRRNPGLHHLAFRAPSREAVDELYARLAKRGAEILYAPR 101 (128)
T ss_pred ---C---cccccCCcCeeEEEEEcCCHHHHHHHHHHHHHcCCeEecCCc
Confidence 0 0123456788999999974 89999999999998776654
No 59
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=98.98 E-value=4.7e-09 Score=89.45 Aligned_cols=113 Identities=18% Similarity=0.237 Sum_probs=78.3
Q ss_pred eeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcC
Q 013898 208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNE 287 (434)
Q Consensus 208 ~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~ 287 (434)
+|+|+.+.|+|++++.+||+++|||+...... . ...+..+. ..+.+..... . ..
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~----~-------~~~~~~~~--~~~~l~~~~~---~----------~~ 54 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD----K-------GAYLEAGD--LWLCLSVDAN---V----------GP 54 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC----C-------ceEEecCC--EEEEEecCCC---C----------CC
Confidence 58999999999999999999999999764321 0 01222222 3333322110 0 12
Q ss_pred CCCceEEEEEe--CCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEE
Q 013898 288 GAGVQHLALVS--EDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQI 365 (434)
Q Consensus 288 G~GvqHIAf~v--dDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqi 365 (434)
..+++||||.+ +|+++++++|+++ |+++...+ ..+ ...+|-+|++|+.+++
T Consensus 55 ~~~~~hi~f~v~~~dl~~~~~~l~~~----G~~~~~~~-~~~----------------------~~~~~f~DPdG~~ie~ 107 (121)
T cd07244 55 AKDYTHYAFSVSEEDFASLKEKLRQA----GVKEWKEN-TSE----------------------GDSFYFLDPDGHKLEL 107 (121)
T ss_pred CCCeeeEEEEeCHHHHHHHHHHHHHc----CCcccCCC-CCC----------------------ccEEEEECCCCCEEEE
Confidence 45689999998 5899999999999 99876532 210 1256889999999999
Q ss_pred EccccCCC
Q 013898 366 FTKPVGDR 373 (434)
Q Consensus 366 fT~~~~~r 373 (434)
|+.++-.|
T Consensus 108 ~~~~~~~~ 115 (121)
T cd07244 108 HVGSLASR 115 (121)
T ss_pred EeCCHHHH
Confidence 98877543
No 60
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=98.98 E-value=7.8e-09 Score=87.42 Aligned_cols=99 Identities=16% Similarity=0.144 Sum_probs=66.0
Q ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe-CCEEEEEEcCCCCCCCcccccCCCCCCCCCCC
Q 013898 32 RFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS-GDLRFVFTAPYSPSISDAADAGNSSASLPTFD 110 (434)
Q Consensus 32 ~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~-G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~ 110 (434)
+++||.|+|+|++++++||++.|||+...+...+.. .....++.. ++..+.|....... +
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~----~------------- 61 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRK--GFESYFLSFDDGARLELMTRPDIA----P------------- 61 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCC--CceEEEEecCCCcEEEEEcCcccC----C-------------
Confidence 479999999999999999999999997644321111 122333433 45667766421110 0
Q ss_pred hhHHhHHHHhcCCceeEEEEEec---CHHHHHHHHHHcCCCCCCCCc
Q 013898 111 HAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPV 154 (434)
Q Consensus 111 ~~~~~~~l~~hG~gv~~Iaf~V~---Dvd~a~~ra~~~Ga~~~~~p~ 154 (434)
.. ......|..||||.|+ |+++++++++++|+++...|.
T Consensus 62 -~~----~~~~~~g~~hi~f~v~~~~~v~~~~~~l~~~g~~~~~~~~ 103 (125)
T cd07241 62 -SP----NEGERTGWAHLAFSVGSKEAVDELTERLRADGYLIIGEPR 103 (125)
T ss_pred -Cc----ccCCCCceEEEEEECCCHHHHHHHHHHHHHCCCEEEeCce
Confidence 00 1123357889999996 489999999999998776564
No 61
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=98.97 E-value=8e-09 Score=87.81 Aligned_cols=111 Identities=19% Similarity=0.221 Sum_probs=75.7
Q ss_pred ceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCC--CceEEEecccCCCCCCCchHHHH
Q 013898 205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANND--EMVLLPMNEPVFGTKRKSQIQTY 282 (434)
Q Consensus 205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~--g~v~i~L~e~~~g~~~~s~i~~f 282 (434)
.+.+|+|+++.|+|++++.+||+++|||++....+ . ...+.... ....+.+..+
T Consensus 3 ~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~----~-------~~~l~~~~~~~~~~~~l~~~------------- 58 (121)
T cd09013 3 DIAHLAHVELLTPKPEESLWFFTDVLGLEETGREG----Q-------SVYLRAWGDYEHHSLKLTES------------- 58 (121)
T ss_pred CccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC----C-------eEEEEeccCCCccEEEEeeC-------------
Confidence 57899999999999999999999999999875421 0 12222211 2233333221
Q ss_pred HhhcCCCCceEEEEEeC---CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCC
Q 013898 283 LEHNEGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQ 359 (434)
Q Consensus 283 l~~~~G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~ 359 (434)
...|++|+||.++ |+++..++|+++ |+++...+ .. .+ .. .-+|-+|++
T Consensus 59 ----~~~~~~h~af~v~~~~~v~~~~~~l~~~----G~~~~~~~-~~--------~~-----------~~-~~~~~~DPd 109 (121)
T cd09013 59 ----PEAGLGHIAWRASSPEALERRVAALEAS----GLGIGWIE-GD--------PG-----------HG-KAYRFRSPD 109 (121)
T ss_pred ----CCCceEEEEEEcCCHHHHHHHHHHHHHc----CCcccccc-CC--------CC-----------Cc-ceEEEECCC
Confidence 2367999999997 588888999999 98864322 11 01 01 134778999
Q ss_pred ceEEEEEcc
Q 013898 360 GTLLQIFTK 368 (434)
Q Consensus 360 g~llqifT~ 368 (434)
|..+.+|..
T Consensus 110 G~~iEl~~~ 118 (121)
T cd09013 110 GHPMELYWE 118 (121)
T ss_pred CCEEEEEEe
Confidence 999999864
No 62
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=98.95 E-value=3.4e-08 Score=83.26 Aligned_cols=115 Identities=21% Similarity=0.151 Sum_probs=76.3
Q ss_pred EEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChhHHh
Q 013898 36 VEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACR 115 (434)
Q Consensus 36 I~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (434)
+.|+|+|++++.+||++.|||+.......+.+. .....+..|+..+.+..+.... .
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~--~~~~~l~~~~~~~~l~~~~~~~-------------------~--- 60 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGR--VMHAELRIGDSVLMLADEFPEH-------------------G--- 60 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCC--EEEEEEEECCEEEEEecCCccc-------------------C---
Confidence 458999999999999999999988765433332 2233456677777776532110 0
Q ss_pred HHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEE
Q 013898 116 SFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRY 175 (434)
Q Consensus 116 ~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~f 175 (434)
....++.+..+++|.|+|++++++++.+.|++++.+|.....+.....++++.|..+.|
T Consensus 61 -~~~~~~~~~~~~~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~~~l 119 (122)
T cd07246 61 -SPASWGGTPVSLHLYVEDVDATFARAVAAGATSVMPPADQFWGDRYGGVRDPFGHRWWI 119 (122)
T ss_pred -CCCCCCCceEEEEEEeCCHHHHHHHHHHCCCeEecCcccccccceEEEEECCCCCEEEE
Confidence 11234556779999999999999999999999887775432323333344444433333
No 63
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=98.94 E-value=7.8e-09 Score=88.32 Aligned_cols=118 Identities=22% Similarity=0.331 Sum_probs=78.8
Q ss_pred eeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhc
Q 013898 207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHN 286 (434)
Q Consensus 207 ~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~ 286 (434)
.+++|+++.|+|++++++||+++|||+...... .. ..+... +...+.+..+.
T Consensus 3 ~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~----------~~-~~~~~~-~~~~l~~~~~~---------------- 54 (123)
T cd08351 3 VTLNHTIVPARDREASAEFYAEILGLPWAKPFG----------PF-AVVKLD-NGVSLDFAQPD---------------- 54 (123)
T ss_pred ceEeEEEEEcCCHHHHHHHHHHhcCCEeeeccC----------CE-EEEEcC-CCcEEEEecCC----------------
Confidence 468999999999999999999999999865321 11 112222 23455554431
Q ss_pred CCCCceEEEEEeC--CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEE
Q 013898 287 EGAGVQHLALVSE--DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQ 364 (434)
Q Consensus 287 ~G~GvqHIAf~vd--DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llq 364 (434)
...+..|+||.++ |+++..++|+++ |+++...| .. ...+ ....-.....++-+|++|+.++
T Consensus 55 ~~~~~~h~a~~v~~~dl~~~~~~l~~~----G~~~~~~~-~~------~~~~------~~~~~~g~~~~~f~DPdG~~iE 117 (123)
T cd08351 55 GEIPPQHYAFLVSEEEFDRIFARIRER----GIDYWADP-QR------TEPG------QINTNDGGRGVYFLDPDGHLLE 117 (123)
T ss_pred CCCCcceEEEEeCHHHHHHHHHHHHHc----CCceecCC-cc------cccc------cccCCCCeeEEEEECCCCCEEE
Confidence 1234789999997 699999999999 99998653 21 0000 0000012246678899999999
Q ss_pred EEccc
Q 013898 365 IFTKP 369 (434)
Q Consensus 365 ifT~~ 369 (434)
+.+.|
T Consensus 118 l~~~~ 122 (123)
T cd08351 118 IITRP 122 (123)
T ss_pred EEecc
Confidence 99887
No 64
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.94 E-value=1.2e-08 Score=86.82 Aligned_cols=116 Identities=18% Similarity=0.287 Sum_probs=79.6
Q ss_pred eeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhc
Q 013898 207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHN 286 (434)
Q Consensus 207 ~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~ 286 (434)
++|+||++.|+|++++++||+++|||+...... ...++..++....|.+..... .. ....
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~-----------~~~~l~~~~~~~~l~l~~~~~---~~------~~~~ 60 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERTD-----------STAVLGTGGKRPLLVLEEDPD---AP------PAPP 60 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcCC-----------CEEEEecCCCeEEEEEEeCCC---CC------cccC
Confidence 479999999999999999999999999875421 012333333346666655421 10 1112
Q ss_pred CCCCceEEEEEeC---CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEE
Q 013898 287 EGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLL 363 (434)
Q Consensus 287 ~G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~ll 363 (434)
...|++||||.|+ |+++.+++|+++ |+++.. |... + + ..-+|-.|++|.++
T Consensus 61 ~~~~~~hi~f~v~~~~~v~~~~~~l~~~----g~~~~~-~~~~---------~-------~-----~~~~~~~DPdG~~i 114 (125)
T cd07255 61 GATGLYHFAILLPSRADLAAALRRLIEL----GIPLVG-ASDH---------L-------V-----SEALYLSDPEGNGI 114 (125)
T ss_pred CCCcEEEEEEECCCHHHHHHHHHHHHHc----CCceec-cccc---------c-------c-----eeEEEEECCCCCEE
Confidence 3567999999997 488999999999 987754 2111 0 0 02357889999999
Q ss_pred EEEcc
Q 013898 364 QIFTK 368 (434)
Q Consensus 364 qifT~ 368 (434)
++++.
T Consensus 115 Ei~~~ 119 (125)
T cd07255 115 EIYAD 119 (125)
T ss_pred EEEEe
Confidence 99864
No 65
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=98.94 E-value=1.3e-08 Score=85.77 Aligned_cols=97 Identities=23% Similarity=0.241 Sum_probs=70.0
Q ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCC
Q 013898 30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTF 109 (434)
Q Consensus 30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~ 109 (434)
+.+++||.+.|+|++++++||++.|||+.....+. .....++.|+..+.+....... .+
T Consensus 1 ~~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~---~~------------ 59 (125)
T cd07253 1 IKRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEE------VGRKALRFGSQKINLHPVGGEF---EP------------ 59 (125)
T ss_pred CcccceEEEEecCHHHHHHHHHHHhCceeeccccc------CCceEEEeCCEEEEEecCCCcc---Cc------------
Confidence 46899999999999999999999999998865431 1233455667777765532110 00
Q ss_pred ChhHHhHHHHhcCCceeEEEEEecC-HHHHHHHHHHcCCCCCCCCc
Q 013898 110 DHAACRSFAASHGLAARSIAVEVED-ADVAFNTSVAHGAKPSSPPV 154 (434)
Q Consensus 110 ~~~~~~~~l~~hG~gv~~Iaf~V~D-vd~a~~ra~~~Ga~~~~~p~ 154 (434)
.....+.|..|++|.|++ +++++++++++|++++..|.
T Consensus 60 -------~~~~~~~~~~hi~~~~~~~~~~~~~~l~~~G~~~~~~~~ 98 (125)
T cd07253 60 -------AAGSPGPGSDDLCLITEPPIDELVAHLEAHGVPIEEGPV 98 (125)
T ss_pred -------CccCCCCCCceEEEEecccHHHHHHHHHHCCceeecCcc
Confidence 011234578899999975 99999999999998776664
No 66
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=98.94 E-value=8.7e-09 Score=84.87 Aligned_cols=114 Identities=19% Similarity=0.236 Sum_probs=76.1
Q ss_pred eeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCC
Q 013898 209 LDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEG 288 (434)
Q Consensus 209 iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G 288 (434)
|+|+++.|+|++++++||+++|||+...... .. ....++..+++ ..+.|..... .... ...+
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~--~~------~~~~~~~~~~~-~~i~l~~~~~---~~~~------~~~~ 62 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPP--FL------FPGAWLYAGDG-PQLHLIEEDP---PDAL------PEGP 62 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCC--CC------CCceEEEeCCC-cEEEEEecCC---Cccc------cCCC
Confidence 6899999999999999999999998764321 11 01123333333 3455544321 1110 1235
Q ss_pred CCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEE
Q 013898 289 AGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQI 365 (434)
Q Consensus 289 ~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqi 365 (434)
.+..|++|.|+|+.+++++|+++ |++++..+ .. . .....++-.|++|.++++
T Consensus 63 ~~~~~~~~~v~d~~~~~~~l~~~----g~~~~~~~-~~--------~------------~~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 63 GRDDHIAFRVDDLDAFRARLKAA----GVPYTESD-VP--------G------------DGVRQLFVRDPDGNRIEL 114 (114)
T ss_pred cccceEEEEeCCHHHHHHHHHHc----CCCccccc-CC--------C------------CCccEEEEECCCCCEEeC
Confidence 67999999999999999999999 99988643 22 0 122345678888988764
No 67
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.92 E-value=2.4e-08 Score=83.23 Aligned_cols=116 Identities=24% Similarity=0.282 Sum_probs=78.7
Q ss_pred eeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCC-ceEEEecccCCCCCCCchHHHHHhhcCCC
Q 013898 211 HAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDE-MVLLPMNEPVFGTKRKSQIQTYLEHNEGA 289 (434)
Q Consensus 211 Hv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g-~v~i~L~e~~~g~~~~s~i~~fl~~~~G~ 289 (434)
||++.|.|++++++||+++|||+..++.... .+.....+..+++ .+.+.+..+.. ..+. ....+.
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~-----~~~~~~ 66 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMG------GGFRWVTVAPPGSPETSLVLAPPAN---PAAM-----SGLQPG 66 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccC------CCcEEEEEeCCCCCeeEEEEeCCCC---cccc-----ccccCC
Confidence 8999999999999999999999988764311 1233333444444 56777755431 1111 112356
Q ss_pred CceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEE
Q 013898 290 GVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQI 365 (434)
Q Consensus 290 GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqi 365 (434)
|..|++|.|+||++++++|+++ |++++.. |..+ . ....++-+|++|+.+.+
T Consensus 67 ~~~~~~~~v~di~~~~~~l~~~----g~~~~~~-~~~~--------~------------~~~~~~~~DP~G~~ie~ 117 (119)
T cd07263 67 GTPGLVLATDDIDATYEELKAR----GVEFSEE-PREM--------P------------YGTVAVFRDPDGNLFVL 117 (119)
T ss_pred CceEEEEEehHHHHHHHHHHhC----CCEEeec-cccC--------C------------CceEEEEECCCCCEEEE
Confidence 7889999999999999999999 9999864 3211 0 11355677888887765
No 68
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=98.92 E-value=9.3e-09 Score=90.17 Aligned_cols=127 Identities=20% Similarity=0.260 Sum_probs=92.0
Q ss_pred eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchH-HHHHh
Q 013898 206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQI-QTYLE 284 (434)
Q Consensus 206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i-~~fl~ 284 (434)
+.++.|+.+.+++.-+.+.||...||++...... . ...+. +.++.+.++.+.+..+..+ .|.+ +.|+.
T Consensus 40 ytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP----~-~~~~~-~v~~~~~~~~~ELthn~Gt-----es~~~~~~~n 108 (170)
T KOG2944|consen 40 YTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVP----K-PEHGV-SVFVFSRNAKLELTHNWGT-----ESPPDQAYLN 108 (170)
T ss_pred hhhhccceeechhhhhHhhhHHHhhcccccccCc----c-CCCCC-ceEEecccCceeeecCCCC-----CCCcchhhcC
Confidence 5678899999999999999999999998664332 1 11222 2556666666666555543 3444 67888
Q ss_pred hcCCC-CceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEE
Q 013898 285 HNEGA-GVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLL 363 (434)
Q Consensus 285 ~~~G~-GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~ll 363 (434)
.+..+ |.+||||.|+||.+++.+|++. ||+|-..|++. +--+|..--|++||-+
T Consensus 109 gN~~prGfgHIci~V~di~sac~~lkek----GV~f~Kk~~dG---------------------k~K~iaF~~dpDgywi 163 (170)
T KOG2944|consen 109 GNKEPRGFGHICIEVDDINSACERLKEK----GVRFKKKLKDG---------------------KMKPIAFLHDPDGYWI 163 (170)
T ss_pred CCCCCCccceEEEEeCCHHHHHHHHHHh----CceeeecCCCc---------------------cccceeEEECCCCCeE
Confidence 77666 9999999999999999999999 99988766332 1124556667788888
Q ss_pred EEEcc
Q 013898 364 QIFTK 368 (434)
Q Consensus 364 qifT~ 368 (434)
.|+++
T Consensus 164 ei~~~ 168 (170)
T KOG2944|consen 164 EIELE 168 (170)
T ss_pred EEeec
Confidence 88875
No 69
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=98.91 E-value=3.8e-08 Score=85.36 Aligned_cols=91 Identities=16% Similarity=0.114 Sum_probs=64.2
Q ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCC
Q 013898 30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTF 109 (434)
Q Consensus 30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~ 109 (434)
+.+++||.+.|+|++++++||++.|||.++.+.+... ........+..|+..+.+.....+
T Consensus 2 i~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~i~l~~~~~~------------------ 62 (131)
T cd08364 2 IEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKT-FSLSKEKFFLIGGLWIAIMEGDSL------------------ 62 (131)
T ss_pred cccEeEEEEEeCCHHHHHHHHHHHhCCeeEEeccccc-ccccceeEEEcCCeEEEEecCCCC------------------
Confidence 6789999999999999999999999998876543110 000111233356666666532110
Q ss_pred ChhHHhHHHHhcCCceeEEEEEec--CHHHHHHHHHHcCCCCC
Q 013898 110 DHAACRSFAASHGLAARSIAVEVE--DADVAFNTSVAHGAKPS 150 (434)
Q Consensus 110 ~~~~~~~~l~~hG~gv~~Iaf~V~--Dvd~a~~ra~~~Ga~~~ 150 (434)
...++.||||.|+ |++++++++.++|+++.
T Consensus 63 -----------~~~~~~Hiaf~v~~~~ld~~~~~l~~~gv~~~ 94 (131)
T cd08364 63 -----------QERTYNHIAFKISDSDVDEYTERIKALGVEMK 94 (131)
T ss_pred -----------CCCCceEEEEEcCHHHHHHHHHHHHHCCCEEe
Confidence 1125789999998 79999999999998753
No 70
>PRK10291 glyoxalase I; Provisional
Probab=98.91 E-value=1.6e-08 Score=87.04 Aligned_cols=91 Identities=12% Similarity=0.156 Sum_probs=59.7
Q ss_pred eEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCC--CceEEEecccCCCCCCCchHHHHHhhcCCCC
Q 013898 213 VGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANND--EMVLLPMNEPVFGTKRKSQIQTYLEHNEGAG 290 (434)
Q Consensus 213 ~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~--g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~G 290 (434)
++.|.|+++++.||+++|||+.......++ .+++..++..++ ....+++..... ... ...|.+
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~--------~~~g~~ 65 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPE-----YKYSLAFVGYGPETEEAVIELTYNWG--VDK--------YELGTA 65 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCC-----CcEEEEEEccCCCCCcceEEeeecCC--CCC--------CcCCCC
Confidence 468999999999999999999876543111 123333333222 122344432210 011 114568
Q ss_pred ceEEEEEeCCHHHHHHHHHHhcCCCCceeccC
Q 013898 291 VQHLALVSEDIFRTLREMRKRSGVGGFEFMPS 322 (434)
Q Consensus 291 vqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~ 322 (434)
++|+||.|+|+++++++|+++ |++++..
T Consensus 66 ~~hlaf~V~d~~~~~~~l~~~----G~~~~~~ 93 (129)
T PRK10291 66 YGHIALSVDNAAEACEKIRQN----GGNVTRE 93 (129)
T ss_pred eeEEEEEeCCHHHHHHHHHHc----CCccccC
Confidence 999999999999999999999 9998853
No 71
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=98.91 E-value=2.1e-08 Score=84.49 Aligned_cols=123 Identities=20% Similarity=0.286 Sum_probs=79.8
Q ss_pred eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhh
Q 013898 206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH 285 (434)
Q Consensus 206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~ 285 (434)
+++++|+++.|+|++++++||+++|||+.....+ +. +. ..+..++ ..+.+..... .... ...
T Consensus 1 ~~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~--~~-----~~--~~~~~~~--~~~~l~~~~~---~~~~----~~~ 62 (125)
T cd07253 1 IKRIDHVVLTVADIEATLDFYTRVLGMEVVRFGE--EV-----GR--KALRFGS--QKINLHPVGG---EFEP----AAG 62 (125)
T ss_pred CcccceEEEEecCHHHHHHHHHHHhCceeecccc--cC-----Cc--eEEEeCC--EEEEEecCCC---ccCc----Ccc
Confidence 4689999999999999999999999999875432 10 11 2233322 4556554321 1100 011
Q ss_pred cCCCCceEEEEEeCC-HHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEE
Q 013898 286 NEGAGVQHLALVSED-IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQ 364 (434)
Q Consensus 286 ~~G~GvqHIAf~vdD-I~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llq 364 (434)
..+.|++|+||.+++ ++++.++|+++ |++++..| ..-.. .+ + ....++-+|++|+++.
T Consensus 63 ~~~~~~~hi~~~~~~~~~~~~~~l~~~----G~~~~~~~-~~~~~---~~-~------------~~~~~~~~DPdG~~ve 121 (125)
T cd07253 63 SPGPGSDDLCLITEPPIDELVAHLEAH----GVPIEEGP-VPRTG---AR-G------------PITSVYFRDPDGNLIE 121 (125)
T ss_pred CCCCCCceEEEEecccHHHHHHHHHHC----CceeecCc-ccccC---CC-C------------CccEEEEECCCCCEEE
Confidence 245789999999975 99999999999 99988654 21000 00 0 0123577888998888
Q ss_pred EEc
Q 013898 365 IFT 367 (434)
Q Consensus 365 ifT 367 (434)
+.+
T Consensus 122 ~~~ 124 (125)
T cd07253 122 LSN 124 (125)
T ss_pred eee
Confidence 764
No 72
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=98.90 E-value=2.4e-08 Score=84.38 Aligned_cols=120 Identities=13% Similarity=0.100 Sum_probs=76.9
Q ss_pred eeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcC--CCceEEEecccCCCCCCCchHHHHHhh
Q 013898 208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANN--DEMVLLPMNEPVFGTKRKSQIQTYLEH 285 (434)
Q Consensus 208 ~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~--~g~v~i~L~e~~~g~~~~s~i~~fl~~ 285 (434)
+|+||++.|+|++++++||+++|||+....... ... .+.....+... .+...+.|.+.... ... ..
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~l~l~~~~~~--~~~------~~ 68 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVN--QDD--PGTYHLFFGDGLGSPGTLLTFFEWPDA--GPK------GR 68 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEec--cCC--CceEEEEEecCCCCCCCEEEEEecCCC--CCC------CC
Confidence 479999999999999999999999998765431 111 01112223222 23345666544210 110 12
Q ss_pred cCCCCceEEEEEeC---CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceE
Q 013898 286 NEGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL 362 (434)
Q Consensus 286 ~~G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~l 362 (434)
....|+.|+||.|+ |+.++.++++++ |+++.. ++.. . ....+|-+|++|++
T Consensus 69 ~~~~~~~hi~f~v~~~~~~~~~~~~~~~~----g~~~~~-~~~~--------~-------------~~~~~~~~DP~G~~ 122 (126)
T cd08346 69 RGPGQIHHIAFSVPSEASLDAWRERLRAA----GVPVSG-VVDH--------F-------------GERSIYFEDPDGLR 122 (126)
T ss_pred CCCCcEEEEEEEcCCHHHHHHHHHHHHHc----CCcccc-eEee--------c-------------ceEEEEEECCCCCE
Confidence 23456899999998 578999999999 998875 3221 0 12345678889988
Q ss_pred EEE
Q 013898 363 LQI 365 (434)
Q Consensus 363 lqi 365 (434)
+++
T Consensus 123 iE~ 125 (126)
T cd08346 123 LEL 125 (126)
T ss_pred EEe
Confidence 875
No 73
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=98.89 E-value=3.4e-08 Score=83.14 Aligned_cols=111 Identities=12% Similarity=0.052 Sum_probs=74.6
Q ss_pred eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhh
Q 013898 206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH 285 (434)
Q Consensus 206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~ 285 (434)
+++|+|+++.|+|+++|.+||++ |||+...... . ..++...+....+.+....
T Consensus 1 ~~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~----~-------~~~~~~~~~~~~~~~~~~~--------------- 53 (113)
T cd07267 1 LTDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD----D-------ELYYRGYGTDPFVYVARKG--------------- 53 (113)
T ss_pred CcEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC----C-------eEEEecCCCccEEEEcccC---------------
Confidence 46899999999999999999999 9998765421 1 1223332222222222210
Q ss_pred cCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEE
Q 013898 286 NEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQI 365 (434)
Q Consensus 286 ~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqi 365 (434)
...++.|+||.|+|+++..+.+++. |+.++..+ . .+ .....++-.|++|..+++
T Consensus 54 -~~~~~~~~af~v~~~~~~~~~~~~~----g~~~~~~~-~---------~~-----------~~~~~~~~~DPdG~~iEl 107 (113)
T cd07267 54 -EKARFVGAAFEAASRADLEKAAALP----GASVIDDL-E---------AP-----------GGGKRVTLTDPDGFPVEL 107 (113)
T ss_pred -CcCcccEEEEEECCHHHHHHHHHcC----CCeeecCC-C---------CC-----------CCceEEEEECCCCCEEEE
Confidence 1357999999999998888888877 88877532 1 00 011256789999999999
Q ss_pred Eccc
Q 013898 366 FTKP 369 (434)
Q Consensus 366 fT~~ 369 (434)
+..+
T Consensus 108 ~~~~ 111 (113)
T cd07267 108 VYGQ 111 (113)
T ss_pred Eecc
Confidence 8753
No 74
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=98.89 E-value=6.7e-09 Score=90.19 Aligned_cols=117 Identities=15% Similarity=0.169 Sum_probs=78.9
Q ss_pred eeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCC
Q 013898 209 LDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEG 288 (434)
Q Consensus 209 iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G 288 (434)
|+||++.|+|++++.+||+++|||+..... .. . ..+.. +...+.+..... ... ....
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~----~~-----~--~~~~~--~~~~l~l~~~~~--~~~--------~~~~ 57 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLG----EK-----T--AYFTI--GGTWLALNEEPD--IPR--------NEIR 57 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccC----Cc-----c--ceEee--CceEEEEEccCC--CCc--------CCcC
Confidence 689999999999999999999999875321 10 1 11222 235566644321 011 1123
Q ss_pred CCceEEEEEeCC--HHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEE
Q 013898 289 AGVQHLALVSED--IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIF 366 (434)
Q Consensus 289 ~GvqHIAf~vdD--I~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqif 366 (434)
.|++||||.+++ +++++++|++. |+++...| ..+.. ...-+|-+|++|+.++++
T Consensus 58 ~~~~hiaf~v~~~dld~~~~~l~~~----G~~~~~~~-~~~~~-------------------~~~~~~f~DPdG~~iEl~ 113 (131)
T cd08363 58 QSYTHIAFTIEDSEFDAFYTRLKEA----GVNILPGR-KRDVR-------------------DRKSIYFTDPDGHKLEVH 113 (131)
T ss_pred ccceEEEEEecHHHHHHHHHHHHHc----CCcccCCC-ccccC-------------------cceEEEEECCCCCEEEEe
Confidence 579999999984 99999999999 99987543 22110 112457889999999999
Q ss_pred ccccCC
Q 013898 367 TKPVGD 372 (434)
Q Consensus 367 T~~~~~ 372 (434)
+...-.
T Consensus 114 ~~~~~~ 119 (131)
T cd08363 114 TGTLAE 119 (131)
T ss_pred cCcHHH
Confidence 876544
No 75
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.88 E-value=3.9e-08 Score=81.95 Aligned_cols=93 Identities=15% Similarity=0.263 Sum_probs=66.1
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe--C-CEEEEEEcCCCCCCCcccccCCCCCCCCCCCh
Q 013898 35 HVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS--G-DLRFVFTAPYSPSISDAADAGNSSASLPTFDH 111 (434)
Q Consensus 35 HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~--G-~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~ 111 (434)
||.+.|+|++++++||++.|||++..+..... ......+.. + ++.|.+..+..+.
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~------------------- 58 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG---GFRWVTVAPPGSPETSLVLAPPANPA------------------- 58 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC---CcEEEEEeCCCCCeeEEEEeCCCCcc-------------------
Confidence 89999999999999999999999987643111 122333333 2 4667665432211
Q ss_pred hHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCC
Q 013898 112 AACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPP 153 (434)
Q Consensus 112 ~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p 153 (434)
+. ...++.+..+++|.|+|+++++++++++|+++..+|
T Consensus 59 ~~----~~~~~~~~~~~~~~v~di~~~~~~l~~~g~~~~~~~ 96 (119)
T cd07263 59 AM----SGLQPGGTPGLVLATDDIDATYEELKARGVEFSEEP 96 (119)
T ss_pred cc----ccccCCCceEEEEEehHHHHHHHHHHhCCCEEeecc
Confidence 00 112445778999999999999999999999887766
No 76
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=98.88 E-value=3.9e-08 Score=91.56 Aligned_cols=214 Identities=16% Similarity=0.198 Sum_probs=129.8
Q ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCce-----------eEEEEEEEeCCEEEEEEcCCCCCCCcccc
Q 013898 30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNT-----------VHASYLLRSGDLRFVFTAPYSPSISDAAD 98 (434)
Q Consensus 30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~-----------~~~~~~l~~G~i~~vl~~p~~~~~~~~~~ 98 (434)
..+.-|+.|.|.|..++++||+++|||++...++.++|+. .....-+...+.+|++--.++-
T Consensus 15 ~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNY------- 87 (299)
T KOG2943|consen 15 TRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNY------- 87 (299)
T ss_pred chheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEecc-------
Confidence 3568899999999999999999999999987776666421 1222333445566665433321
Q ss_pred cCCCCCCCCCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898 99 AGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY 178 (434)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~ 178 (434)
+|..|+ -|.+..+|++.++|+-...+.....|.+ ...-.++.+..++|..++++++
T Consensus 88 ------gV~~Ye----------lGndfg~i~I~s~dv~~~ve~v~~p~~~--------~~g~~~~~v~dPdGykF~l~~~ 143 (299)
T KOG2943|consen 88 ------GVSKYE----------LGNDFGGITIASDDVFSKVEKVNAPGGK--------GSGCGIAFVKDPDGYKFYLIDR 143 (299)
T ss_pred ------Ccccee----------ccCCcccEEEeHHHHHHHHHHhcCcCCc--------ccceEEEEEECCCCcEEEEecc
Confidence 122221 3556678888888876665554444332 1222355566677777777653
Q ss_pred cCcCCCCCCCCCCccCCCCCCCCcccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcC
Q 013898 179 KDKANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANN 258 (434)
Q Consensus 179 ~~~~~~g~~~p~f~~~~~~~~~~~~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~ 258 (434)
+ +..+ . +-.|.++|.|+++++.||++.||++....-. . -.+..|.-.
T Consensus 144 --~------------------p~s~-p---v~~V~l~VgdL~ks~kyw~~~lgM~ilekee--k-------~t~~~mgYg 190 (299)
T KOG2943|consen 144 --G------------------PQSD-P---VLQVMLNVGDLQKSIKYWEKLLGMKILEKEE--K-------YTRARMGYG 190 (299)
T ss_pred --C------------------CCCC-C---eEEEEEEehhHHHHHHHHHHHhCcchhhhhh--h-------hhhhhhccC
Confidence 1 0011 1 3368899999999999999999999875311 0 011223334
Q ss_pred CCceEEEecccCCCCCCCchHHHHHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceecc
Q 013898 259 DEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMP 321 (434)
Q Consensus 259 ~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~ 321 (434)
++.+.++|...-. . +++..|-|--.+|.-++|+....+.++.. +-.++.
T Consensus 191 d~q~~LElt~~~~----~------id~~kg~griafaip~d~~~~l~e~iK~~----n~~i~~ 239 (299)
T KOG2943|consen 191 DEQCVLELTYNYD----V------IDRAKGFGRIAFAIPTDDLPKLQEAIKSA----NGTILT 239 (299)
T ss_pred CcceEEEEEeccC----c------ccccccceeEEEeccccccccHHHHHHHh----cccccc
Confidence 5567777755321 1 22323434334444556888888888877 555553
No 77
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=98.87 E-value=5.2e-08 Score=82.13 Aligned_cols=114 Identities=19% Similarity=0.150 Sum_probs=70.6
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC-EEEEEEcCCCCCCCcccccCCCCCCCCCCChhH
Q 013898 35 HVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD-LRFVFTAPYSPSISDAADAGNSSASLPTFDHAA 113 (434)
Q Consensus 35 HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~-i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (434)
++.++|+|++++++||+++|||+.....+ ....+...++ +.+.+..+.... .+
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~~-------~~~~~~~~~~~~~l~l~~~~~~~-------------~~------ 57 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDSD-------WYVSLRSPDGGVELAFMLPGHET-------------VP------ 57 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEeccC-------cEEEEecCCCceEEEEccCCCCC-------------Cc------
Confidence 56899999999999999999999876522 1223333333 555554322110 00
Q ss_pred HhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEe
Q 013898 114 CRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYV 176 (434)
Q Consensus 114 ~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fv 176 (434)
.......+.++ +++|.|+|+++++++++++|++++.+|.......+...++++.|..+.|+
T Consensus 58 -~~~~~~~~~~~-~~~~~v~did~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~ 118 (119)
T cd08359 58 -AAQYQFQGQGL-ILNFEVDDVDAEYERLKAEGLPIVLPLRDEPWGQRHFIVRDPNGVLIDIV 118 (119)
T ss_pred -chhcccCCceE-EEEEEECCHHHHHHHHHhcCCCeeeccccCCCcceEEEEECCCCCEEEEE
Confidence 01112344566 79999999999999999999987766654322223333444444444443
No 78
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=98.87 E-value=2e-08 Score=88.71 Aligned_cols=110 Identities=12% Similarity=0.101 Sum_probs=72.8
Q ss_pred eeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCC--ceEEEecccCCCCCCCchHHHHHhhcC
Q 013898 210 DHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDE--MVLLPMNEPVFGTKRKSQIQTYLEHNE 287 (434)
Q Consensus 210 DHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g--~v~i~L~e~~~g~~~~s~i~~fl~~~~ 287 (434)
.||++.|+|++++++||+++|||++..... + ....+..... ...+.+. ...
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~--~--------~~~~l~~~~~~~~h~~~~~-----------------~~~ 53 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIE--D--------RIVFMRCHPNPFHHTFAVG-----------------PAS 53 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeC--C--------EEEEEEcCCCCCcceeeec-----------------cCC
Confidence 499999999999999999999999875532 0 1122332211 1222211 113
Q ss_pred CCCceEEEEEeCCH---HHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEE
Q 013898 288 GAGVQHLALVSEDI---FRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQ 364 (434)
Q Consensus 288 G~GvqHIAf~vdDI---~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llq 364 (434)
..|++||||.|+|+ +++.++|+++ |+++...| .. .+ ......+|-+|++|.+++
T Consensus 54 ~~gl~Hiaf~v~~~~~v~~~~~~l~~~----G~~~~~~p-~~--------~~----------~~~~~~~y~~DPdG~~iE 110 (141)
T cd07258 54 SSHFHHVNFMVTDIDDIGKALYRIKAH----DVKVVFGP-GR--------HP----------PSDSIFFYFLDPDGITVE 110 (141)
T ss_pred CCceEEEEEECCCHHHHHHHHHHHHHC----CCcEEeCC-ce--------EC----------CCCCEEEEEECCCCCEEE
Confidence 46799999999865 5678899888 99887543 21 11 012334688999999999
Q ss_pred EEccc
Q 013898 365 IFTKP 369 (434)
Q Consensus 365 ifT~~ 369 (434)
+...-
T Consensus 111 ~~~~~ 115 (141)
T cd07258 111 YSFGM 115 (141)
T ss_pred EEeCc
Confidence 86654
No 79
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=98.87 E-value=7.5e-08 Score=85.08 Aligned_cols=94 Identities=14% Similarity=0.060 Sum_probs=62.1
Q ss_pred CcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC-EEEEEEcCCCCCCCcccccCCCCCCCC
Q 013898 29 RVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD-LRFVFTAPYSPSISDAADAGNSSASLP 107 (434)
Q Consensus 29 ~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~-i~~vl~~p~~~~~~~~~~~~~~~~~~~ 107 (434)
.+.+++||.+.|+|++++.+||+++|||++..+...+++.... ...++.++ ...+...
T Consensus 3 ~~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~-~~~l~~~~~~h~~~~~-------------------- 61 (143)
T cd07243 3 GAHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRV-GSFLSCSNKPHDIAFV-------------------- 61 (143)
T ss_pred CCceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEE-EEEEecCCCcceEEEe--------------------
Confidence 4689999999999999999999999999987664222221111 22223222 1111000
Q ss_pred CCChhHHhHHHHhcCCceeEEEEEecCHHH---HHHHHHHcCCCCCCCCc
Q 013898 108 TFDHAACRSFAASHGLAARSIAVEVEDADV---AFNTSVAHGAKPSSPPV 154 (434)
Q Consensus 108 ~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~---a~~ra~~~Ga~~~~~p~ 154 (434)
...+.++.|+||+|+|+++ +.+++.++|+++...|.
T Consensus 62 -----------~~~~~~~~Hiaf~v~d~~~l~~~~~~l~~~Gv~i~~~p~ 100 (143)
T cd07243 62 -----------GGPDGKLHHFSFFLESWEDVLKAGDIISMNDVSIDIGPT 100 (143)
T ss_pred -----------cCCCCCceEEEEEcCCHHHHHHHHHHHHHcCCceEECCc
Confidence 0112467899999999777 67899999998655553
No 80
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=98.86 E-value=3.9e-08 Score=85.35 Aligned_cols=88 Identities=10% Similarity=0.121 Sum_probs=63.8
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChh
Q 013898 33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHA 112 (434)
Q Consensus 33 l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~ 112 (434)
|+||.|.|+|++++.+||++.|||+++.... ....+..++..+.+...... +
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~--------~~~~~~~~~~~l~l~~~~~~-----~--------------- 52 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE--------KTAYFTIGGTWLALNEEPDI-----P--------------- 52 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCC--------ccceEeeCceEEEEEccCCC-----C---------------
Confidence 6899999999999999999999999875421 12234557777777542110 0
Q ss_pred HHhHHHHhcCCceeEEEEEecC--HHHHHHHHHHcCCCCCCCC
Q 013898 113 ACRSFAASHGLAARSIAVEVED--ADVAFNTSVAHGAKPSSPP 153 (434)
Q Consensus 113 ~~~~~l~~hG~gv~~Iaf~V~D--vd~a~~ra~~~Ga~~~~~p 153 (434)
+ .....++.||||.|++ ++++++++.+.|+++..+|
T Consensus 53 ---~--~~~~~~~~hiaf~v~~~dld~~~~~l~~~G~~~~~~~ 90 (131)
T cd08363 53 ---R--NEIRQSYTHIAFTIEDSEFDAFYTRLKEAGVNILPGR 90 (131)
T ss_pred ---c--CCcCccceEEEEEecHHHHHHHHHHHHHcCCcccCCC
Confidence 0 0122467899999984 9999999999999876544
No 81
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=98.85 E-value=7.1e-08 Score=81.94 Aligned_cols=83 Identities=22% Similarity=0.250 Sum_probs=60.8
Q ss_pred CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe-CC---EEEEEEcCCCCCCCcccccCCCC
Q 013898 28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS-GD---LRFVFTAPYSPSISDAADAGNSS 103 (434)
Q Consensus 28 ~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~-G~---i~~vl~~p~~~~~~~~~~~~~~~ 103 (434)
+.+.+++||.|.|+|++++.+||++.|||+++.+.+ ....++. ++ ..+.+..
T Consensus 2 ~~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~--------~~~~l~~~~~~~~~~~~l~~---------------- 57 (121)
T cd09013 2 FDIAHLAHVELLTPKPEESLWFFTDVLGLEETGREG--------QSVYLRAWGDYEHHSLKLTE---------------- 57 (121)
T ss_pred CCccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC--------CeEEEEeccCCCccEEEEee----------------
Confidence 568999999999999999999999999999886632 1223332 21 2222221
Q ss_pred CCCCCCChhHHhHHHHhcCCceeEEEEEec---CHHHHHHHHHHcCCCCC
Q 013898 104 ASLPTFDHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPS 150 (434)
Q Consensus 104 ~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~---Dvd~a~~ra~~~Ga~~~ 150 (434)
.-..++.|+||.|+ |++++++++.++|+++.
T Consensus 58 ----------------~~~~~~~h~af~v~~~~~v~~~~~~l~~~G~~~~ 91 (121)
T cd09013 58 ----------------SPEAGLGHIAWRASSPEALERRVAALEASGLGIG 91 (121)
T ss_pred ----------------CCCCceEEEEEEcCCHHHHHHHHHHHHHcCCccc
Confidence 01237889999997 58899999999999753
No 82
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=98.85 E-value=7e-08 Score=80.70 Aligned_cols=92 Identities=17% Similarity=0.135 Sum_probs=63.2
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC-EEEEEEcCCCCCCCcccccCCCCCCCCCCCh
Q 013898 33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD-LRFVFTAPYSPSISDAADAGNSSASLPTFDH 111 (434)
Q Consensus 33 l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~-i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~ 111 (434)
+.||.|.|+|++++++||++.|||++..... +. ....++..++ ..+.+......
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~-------------------- 55 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GG----GDYAVFSTGGGAVGGLMKAPEP-------------------- 55 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CC----CceEEEEeCCccEEEEecCCCC--------------------
Confidence 4799999999999999999999999875532 11 1234555554 22222221100
Q ss_pred hHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccc
Q 013898 112 AACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVIL 156 (434)
Q Consensus 112 ~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~ 156 (434)
. ..+.+..+++|.|+|+++++++++++|++++.+|...
T Consensus 56 ----~---~~~~~~~~~~f~v~di~~~~~~l~~~g~~~~~~~~~~ 93 (114)
T cd07247 56 ----A---AGSPPGWLVYFAVDDVDAAAARVEAAGGKVLVPPTDI 93 (114)
T ss_pred ----C---CCCCCeEEEEEEeCCHHHHHHHHHHCCCEEEeCCccc
Confidence 0 1223456899999999999999999999887776543
No 83
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=98.84 E-value=3e-08 Score=83.03 Aligned_cols=110 Identities=24% Similarity=0.306 Sum_probs=77.0
Q ss_pred eeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcC-CCceEEEecccCCCCCCCchHHHHHhh
Q 013898 207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANN-DEMVLLPMNEPVFGTKRKSQIQTYLEH 285 (434)
Q Consensus 207 ~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~-~g~v~i~L~e~~~g~~~~s~i~~fl~~ 285 (434)
++|+|+++.|+|++++.+||+++|||+...... ...++..+ .+...+.+...
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~---------------- 53 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA-----------GSVYLRCSEDDHHSLVLTEG---------------- 53 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC-----------CeEEEecCCCCcEEEEEEeC----------------
Confidence 378999999999999999999999999875421 01233333 33444444332
Q ss_pred cCCCCceEEEEEeC---CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceE
Q 013898 286 NEGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL 362 (434)
Q Consensus 286 ~~G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~l 362 (434)
...++.|+||.|+ |+++..++|+++ |+++...| .. . .+ .....+-.|++|.+
T Consensus 54 -~~~~~~h~~~~v~~~~~v~~~~~~l~~~----g~~~~~~~-~~------~-~~------------~~~~~~~~DP~G~~ 108 (117)
T cd07240 54 -DEPGVDALGFEVASEEDLEALAAHLEAA----GVAPEEAS-DP------E-PG------------VGRGLRFQDPDGHL 108 (117)
T ss_pred -CCCCceeEEEEcCCHHHHHHHHHHHHHc----CCceEEcC-cc------C-CC------------CceEEEEECCCCCE
Confidence 1356899999997 689999999999 99988654 20 0 00 11234667888999
Q ss_pred EEEEcc
Q 013898 363 LQIFTK 368 (434)
Q Consensus 363 lqifT~ 368 (434)
++++..
T Consensus 109 ie~~~~ 114 (117)
T cd07240 109 LELFVE 114 (117)
T ss_pred EEEEEc
Confidence 998865
No 84
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=98.84 E-value=3.5e-08 Score=83.54 Aligned_cols=112 Identities=20% Similarity=0.196 Sum_probs=75.9
Q ss_pred eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCC--CceEEEecccCCCCCCCchHHHHH
Q 013898 206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANND--EMVLLPMNEPVFGTKRKSQIQTYL 283 (434)
Q Consensus 206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~--g~v~i~L~e~~~g~~~~s~i~~fl 283 (434)
+++|+|+++.|+|++++.+||+++|||+...... . ..++.... ....+.+..+
T Consensus 2 ~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~----~-------~~~~~~~~~~~~~~~~~~~~-------------- 56 (121)
T cd07266 2 ILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD----D-------RIYLRGLEEFIHHSLVLTKA-------------- 56 (121)
T ss_pred cceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC----C-------eEEEEecCCCceEEEEEeeC--------------
Confidence 6789999999999999999999999999764311 0 11122111 1223333221
Q ss_pred hhcCCCCceEEEEEe---CCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCc
Q 013898 284 EHNEGAGVQHLALVS---EDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQG 360 (434)
Q Consensus 284 ~~~~G~GvqHIAf~v---dDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g 360 (434)
...|+.|++|.| +|+++..++|+++ |+++...|+... . + ....+|-.|++|
T Consensus 57 ---~~~~~~hi~~~v~~~~dv~~~~~~l~~~----g~~~~~~~~~~~-~------~------------~~~~~~~~DPdG 110 (121)
T cd07266 57 ---PVAGLGHIAFRVRSEEDLDKAEAFFQEL----GLPTEWVEAGEE-P------G------------QGRALRVEDPLG 110 (121)
T ss_pred ---CCCceeEEEEECCCHHHHHHHHHHHHHc----CCCcccccCCcC-C------C------------CccEEEEECCCC
Confidence 235799999999 5789999999999 999876532111 0 0 012457789999
Q ss_pred eEEEEEcc
Q 013898 361 TLLQIFTK 368 (434)
Q Consensus 361 ~llqifT~ 368 (434)
..+++|+.
T Consensus 111 ~~ve~~~~ 118 (121)
T cd07266 111 FPIEFYAE 118 (121)
T ss_pred CEEEEEec
Confidence 99999864
No 85
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=98.83 E-value=8e-08 Score=83.04 Aligned_cols=116 Identities=22% Similarity=0.284 Sum_probs=76.3
Q ss_pred eeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCC
Q 013898 210 DHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGA 289 (434)
Q Consensus 210 DHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~ 289 (434)
+||++.|+|++++.+||+++|||+...... .++. ....++..+.....+.+.... ...
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~--~~~~----~~~~~~~~~~~~~~l~~~~~~----------------~~~ 58 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVG--DPGV----DAAAFLRCDEDHHDLALFPGP----------------ERP 58 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEc--cCCc----eeEEEEEcCCCcceEEEEcCC----------------CCC
Confidence 699999999999999999999999765432 1110 122333333333344443321 146
Q ss_pred CceEEEEEeCCHH---HHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEE
Q 013898 290 GVQHLALVSEDIF---RTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIF 366 (434)
Q Consensus 290 GvqHIAf~vdDI~---~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqif 366 (434)
|++|++|.|+|++ +.+++|+++ |++++..| .... .+ ....++-+|++|++++|+
T Consensus 59 ~~~hl~~~v~d~~~~~~~~~~l~~~----G~~i~~~~-~~~~------~~------------~~~~~~~~DPdG~~iei~ 115 (131)
T cd08343 59 GLHHVAFEVESLDDILRAADRLAAN----GIQIEFGP-GRHG------PG------------NNLFLYFRDPDGNRVELS 115 (131)
T ss_pred CeeEEEEEcCCHHHHHHHHHHHHHc----CCeeEECC-CccC------CC------------CcEEEEEECCCCCEEEEE
Confidence 7999999999985 678899998 99998654 2100 00 012346788899999988
Q ss_pred cccc
Q 013898 367 TKPV 370 (434)
Q Consensus 367 T~~~ 370 (434)
+...
T Consensus 116 ~~~~ 119 (131)
T cd08343 116 AEMY 119 (131)
T ss_pred cCCc
Confidence 6543
No 86
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=98.83 E-value=1e-07 Score=85.66 Aligned_cols=113 Identities=17% Similarity=0.056 Sum_probs=75.3
Q ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeC---CEEEEEEcCCCCCCCcccccCCCCCCCCC
Q 013898 32 RFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG---DLRFVFTAPYSPSISDAADAGNSSASLPT 108 (434)
Q Consensus 32 ~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G---~i~~vl~~p~~~~~~~~~~~~~~~~~~~~ 108 (434)
|++||.+.|+|++++.+||++.|||++..+.. ....++..| +..|.|..+....
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~-------~~~~~~~~~~~~~~~l~l~~~~~~~---------------- 57 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG-------DRVRLEEGGGGPGAVVDVLEEPDQP---------------- 57 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC-------CEEEEEecCCCCCCEEEEEeCCCCC----------------
Confidence 58999999999999999999999999886632 122333333 5666665531100
Q ss_pred CChhHHhHHHHhcC-CceeEEEEEecC---HHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898 109 FDHAACRSFAASHG-LAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY 178 (434)
Q Consensus 109 ~~~~~~~~~l~~hG-~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~ 178 (434)
....+ .++.||||.|+| +++++++++++|+++ ..+... +......++.+.|..++++..
T Consensus 58 ---------~~~~~~~~l~Hiaf~v~d~~dvd~~~~~L~~~Gv~~-~~~~~~-~~~~s~yf~DPdG~~iEl~~~ 120 (157)
T cd08347 58 ---------RGRPGAGTVHHVAFRVPDDEELEAWKERLEALGLPV-SGIVDR-FYFKSLYFREPGGILFEIATD 120 (157)
T ss_pred ---------CCcccCCceEEEEEECCCHHHHHHHHHHHHHCCCCc-cccccc-ccEEEEEEECCCCcEEEEEEC
Confidence 00112 478899999998 899999999999974 344322 112223355666667766653
No 87
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=98.83 E-value=9.6e-08 Score=77.58 Aligned_cols=105 Identities=21% Similarity=0.252 Sum_probs=77.6
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChhHH
Q 013898 35 HVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAAC 114 (434)
Q Consensus 35 HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (434)
||.+.|+|.+++++||++.|||+....... . ......++.++..|.|..+.... .
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~--~~~~~~~~~~~~~i~l~~~~~~~-------------------~-- 55 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--G--GAEFAVLGLGGTRLELFEGDEPA-------------------P-- 55 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--C--CEEEEEEecCCceEEEecCCCCC-------------------C--
Confidence 899999999999999999999998877531 0 13456667778888888753211 0
Q ss_pred hHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898 115 RSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY 178 (434)
Q Consensus 115 ~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~ 178 (434)
. .++.++.+++|+|+|++++++++.++|+.+...+... .+++..+++.|+
T Consensus 56 ~----~~~~~~~~~~~~v~~~~~~~~~l~~~g~~~~~~~~~~----------~~~~~~~~~~Dp 105 (112)
T cd06587 56 A----PSGGGGVHLAFEVDDVDAAYERLKAAGVEVLGEPREE----------PWGGRVAYFRDP 105 (112)
T ss_pred c----ccCCCeeEEEEECCCHHHHHHHHHHcCCcccCCCcCC----------CCCcEEEEEECC
Confidence 0 3456788999999999999999999999877666422 134556666664
No 88
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=98.81 E-value=6.4e-08 Score=83.58 Aligned_cols=117 Identities=21% Similarity=0.244 Sum_probs=77.3
Q ss_pred eeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcC-CCceEEEecccCCCCCCCchHHHHHhhc
Q 013898 208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANN-DEMVLLPMNEPVFGTKRKSQIQTYLEHN 286 (434)
Q Consensus 208 ~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~-~g~v~i~L~e~~~g~~~~s~i~~fl~~~ 286 (434)
+|+|+++.|+|++++++||+++|||+...... . .....+..+ .....+.+..... .. . ..
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~--~-------~~~~~~~~~~~~~~~l~l~~~~~---~~-~------~~ 61 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGP--L-------GGLVFLSRDPDEHHQIALITGRP---AA-P------PP 61 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeecc--C-------CcEEEEEecCCCceEEEEEecCC---CC-C------CC
Confidence 58999999999999999999999999765421 1 012233322 2345666655421 11 0 12
Q ss_pred CCCCceEEEEEeCCHH---HHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEE
Q 013898 287 EGAGVQHLALVSEDIF---RTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLL 363 (434)
Q Consensus 287 ~G~GvqHIAf~vdDI~---~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~ll 363 (434)
...|++|+||.|+|+. +..++|.+. |++++..+ .. + .....+-+|++|.++
T Consensus 62 ~~~~~~h~~f~v~~~~~v~~~~~~l~~~----G~~~~~~~-~~---------~------------~~~~~~~~DP~G~~i 115 (134)
T cd08348 62 GPAGLNHIAFEVDSLDDLRDLYERLRAA----GITPVWPV-DH---------G------------NAWSIYFRDPDGNRL 115 (134)
T ss_pred CCCCceEEEEEeCCHHHHHHHHHHHHHC----CCCccccC-CC---------C------------ceeEEEEECCCCCEE
Confidence 3567999999999865 477888888 98877532 11 0 012346788999999
Q ss_pred EEEccc
Q 013898 364 QIFTKP 369 (434)
Q Consensus 364 qifT~~ 369 (434)
.+++..
T Consensus 116 e~~~~~ 121 (134)
T cd08348 116 ELFVDT 121 (134)
T ss_pred EEEEcC
Confidence 998654
No 89
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=98.81 E-value=1.6e-07 Score=79.72 Aligned_cols=115 Identities=17% Similarity=0.101 Sum_probs=72.7
Q ss_pred EEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChhHHhH
Q 013898 37 EFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACRS 116 (434)
Q Consensus 37 ~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (434)
.|.|+|++++++||+++|||++......+.+. .....++.++..+++....... .. ..
T Consensus 4 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~--~~~~~l~~~~~~~~l~~~~~~~-----------~~---------~~ 61 (122)
T cd08355 4 TLRYRDAAAAIDWLTDAFGFEERLVVPDDDGG--VAHAELRFGDGGVMVGSVRDDY-----------RA---------SS 61 (122)
T ss_pred EEEECCHHHHHHHHHHhcCCEEEEEEeCCCCc--EEEEEEEECCEEEEEecCCCcc-----------cc---------cc
Confidence 57899999999999999999998765322221 2233456677777775432110 00 00
Q ss_pred HHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEE
Q 013898 117 FAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLR 174 (434)
Q Consensus 117 ~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~ 174 (434)
....+.+..+++|.|+|+++++++++++|++++.+|...........++++.|..+.
T Consensus 62 -~~~~~~~~~~~~~~v~d~d~~~~~l~~~G~~v~~~~~~~~~g~~~~~~~DPdG~~~~ 118 (122)
T cd08355 62 -ARAGGAGTQGVYVVVDDVDAHYERARAAGAEILREPTDTPYGSREFTARDPEGNLWT 118 (122)
T ss_pred -cccCCCceEEEEEEECCHHHHHHHHHHCCCEEeeCccccCCCcEEEEEECCCCCEEE
Confidence 112334566899999999999999999999988777543222223334444443333
No 90
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=98.81 E-value=1.1e-07 Score=80.20 Aligned_cols=96 Identities=19% Similarity=0.118 Sum_probs=63.0
Q ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe----CCEEEEEEcCCCCCCCcccccCCCCCCCC
Q 013898 32 RFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS----GDLRFVFTAPYSPSISDAADAGNSSASLP 107 (434)
Q Consensus 32 ~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~----G~i~~vl~~p~~~~~~~~~~~~~~~~~~~ 107 (434)
+++||.+.|+|++++++||++.|||++......+.+.. .....+.. ++..+.|........
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~l~~~~~~~~-------------- 65 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPG-TYHLFFGDGLGSPGTLLTFFEWPDAGP-------------- 65 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCc-eEEEEEecCCCCCCCEEEEEecCCCCC--------------
Confidence 57999999999999999999999999887654222111 11222322 344565554321100
Q ss_pred CCChhHHhHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCCCC
Q 013898 108 TFDHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSS 151 (434)
Q Consensus 108 ~~~~~~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~ 151 (434)
. ......+..|+||.|+| ++++++++.++|+++..
T Consensus 66 --------~-~~~~~~~~~hi~f~v~~~~~~~~~~~~~~~~g~~~~~ 103 (126)
T cd08346 66 --------K-GRRGPGQIHHIAFSVPSEASLDAWRERLRAAGVPVSG 103 (126)
T ss_pred --------C-CCCCCCcEEEEEEEcCCHHHHHHHHHHHHHcCCcccc
Confidence 0 00122367899999984 69999999999998654
No 91
>PRK06724 hypothetical protein; Provisional
Probab=98.80 E-value=6.5e-08 Score=83.99 Aligned_cols=114 Identities=11% Similarity=0.166 Sum_probs=74.6
Q ss_pred eeeeeeeeEecCCHHHHHHHHHHhh---CCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHH
Q 013898 206 IRRLDHAVGNVPELAPAVAYVKSFT---GFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTY 282 (434)
Q Consensus 206 l~~iDHv~i~V~dl~~~~~fY~~vL---Gf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~f 282 (434)
..+||||++.|+|+++++.||+++| ||+...... . ..+..++.|.... ..
T Consensus 5 ~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~~---------------~--~~g~~~l~l~~~~----~~------ 57 (128)
T PRK06724 5 RAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEVA---------------Y--STGESEIYFKEVD----EE------ 57 (128)
T ss_pred CcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeEe---------------e--eCCCeeEEEecCC----cc------
Confidence 5679999999999999999999977 555432110 0 1123444443321 00
Q ss_pred HhhcCCCCceEEEEEe---CCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCC
Q 013898 283 LEHNEGAGVQHLALVS---EDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQ 359 (434)
Q Consensus 283 l~~~~G~GvqHIAf~v---dDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~ 359 (434)
+. ...|+.|+||.| +|+++..++|+++ |++++..| ..+.. .+ ...-.++-+|++
T Consensus 58 ~~--~~~g~~h~af~v~~~~dvd~~~~~l~~~----G~~~~~~p-~~~~~-----~~-----------~g~~~~~f~DPd 114 (128)
T PRK06724 58 IV--RTLGPRHICYQAINRKVVDEVAEFLSST----KIKIIRGP-MEMNH-----YS-----------EGYYTIDFYDPN 114 (128)
T ss_pred cc--CCCCceeEEEecCChHHHHHHHHHHHHC----CCEEecCC-cccCC-----CC-----------CCEEEEEEECCC
Confidence 11 235789999998 7899999999999 99998643 33210 00 011245678999
Q ss_pred ceEEEEEccc
Q 013898 360 GTLLQIFTKP 369 (434)
Q Consensus 360 g~llqifT~~ 369 (434)
|..++++..|
T Consensus 115 G~~iEl~~~~ 124 (128)
T PRK06724 115 GFIIEVAYTP 124 (128)
T ss_pred CCEEEEEeCC
Confidence 9999987654
No 92
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=98.80 E-value=6e-08 Score=79.79 Aligned_cols=106 Identities=19% Similarity=0.110 Sum_probs=70.9
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCE-EEEEEcCCCCCCCcccccCCCCCCCCCCCh
Q 013898 33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDL-RFVFTAPYSPSISDAADAGNSSASLPTFDH 111 (434)
Q Consensus 33 l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i-~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~ 111 (434)
|+||.+.|+|.+++.+||++.|||+.+.+.... .....+..++. .+.|.......
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~-----~~~~~~~~~~~~~i~l~~~~~~~------------------- 56 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL-----FPGAWLYAGDGPQLHLIEEDPPD------------------- 56 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC-----CCceEEEeCCCcEEEEEecCCCc-------------------
Confidence 689999999999999999999999977543211 01223333333 45554321110
Q ss_pred hHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898 112 AACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY 178 (434)
Q Consensus 112 ~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~ 178 (434)
. . ...+.+..+++|+|+|++++++++.++|++++..+.. .+|+..+++.|+
T Consensus 57 ~--~---~~~~~~~~~~~~~v~d~~~~~~~l~~~g~~~~~~~~~-----------~~~~~~~~~~DP 107 (114)
T cd07245 57 A--L---PEGPGRDDHIAFRVDDLDAFRARLKAAGVPYTESDVP-----------GDGVRQLFVRDP 107 (114)
T ss_pred c--c---cCCCcccceEEEEeCCHHHHHHHHHHcCCCcccccCC-----------CCCccEEEEECC
Confidence 0 0 1233467899999999999999999999997765532 135555677774
No 93
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=98.80 E-value=1.8e-07 Score=84.79 Aligned_cols=120 Identities=15% Similarity=0.133 Sum_probs=77.4
Q ss_pred CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC--EEEEEEcCCCCCCCcccccCCCCCC
Q 013898 28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD--LRFVFTAPYSPSISDAADAGNSSAS 105 (434)
Q Consensus 28 ~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~--i~~vl~~p~~~~~~~~~~~~~~~~~ 105 (434)
+.|.+|+||.|+|+|++++++||++.|||+++.....+.+. .....++.++ ..+.+... ..
T Consensus 2 ~~i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~l~~~--~~------------- 64 (166)
T cd09014 2 VGVRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGK--EAGAWMSVSNKVHDVAYTRD--PA------------- 64 (166)
T ss_pred CCcceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCc--eEEEEEeCCCCceeEEEecC--CC-------------
Confidence 46899999999999999999999999999987653322211 1122333322 23333210 00
Q ss_pred CCCCChhHHhHHHHhcCCceeEEEEEecCH---HHHHHHHHHcCCCCCCCCccccC-ceEEEEEEecCCeEEEEeec
Q 013898 106 LPTFDHAACRSFAASHGLAARSIAVEVEDA---DVAFNTSVAHGAKPSSPPVILDN-LAVIAEVQLYGDVVLRYVSY 178 (434)
Q Consensus 106 ~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dv---d~a~~ra~~~Ga~~~~~p~~~~~-~~~~~~i~~~Gg~~~~fvd~ 178 (434)
....++.||||+|+|. ++++++++++|+++...|..... .....-++.++|..+++...
T Consensus 65 --------------~~~~~~~hiaf~v~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 65 --------------GARGRLHHLAYALDTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred --------------CCCCCceEEEEECCCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 0113578999999864 58889999999997666643211 12234466778878887764
No 94
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=98.80 E-value=4.2e-08 Score=82.75 Aligned_cols=113 Identities=19% Similarity=0.210 Sum_probs=74.5
Q ss_pred eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCC-ceEEEecccCCCCCCCchHHHHHh
Q 013898 206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDE-MVLLPMNEPVFGTKRKSQIQTYLE 284 (434)
Q Consensus 206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g-~v~i~L~e~~~g~~~~s~i~~fl~ 284 (434)
+++|+|+.+.|+|++++.+||+++|||+...... ...++...+. ...+.+...
T Consensus 1 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~--------------- 54 (120)
T cd08362 1 VTALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD-----------GIVYLRATGSEHHILRLRRS--------------- 54 (120)
T ss_pred CceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC-----------CEEEEECCCCccEEEEeccC---------------
Confidence 4689999999999999999999999999764321 0123332221 222333211
Q ss_pred hcCCCCceEEEEEe---CCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCce
Q 013898 285 HNEGAGVQHLALVS---EDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGT 361 (434)
Q Consensus 285 ~~~G~GvqHIAf~v---dDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~ 361 (434)
..++++|+||.| +|+++.+++|++. |+++...| .. +.. . .....++-.|++|.
T Consensus 55 --~~~~~~~~~~~v~~~~~l~~~~~~l~~~----G~~~~~~~-~~-------~~~------~----~~~~~~~~~DP~G~ 110 (120)
T cd08362 55 --DRNRLDVVSFSVASRADVDALARQVAAR----GGTVLSEP-GA-------TDD------P----GGGYGFRFFDPDGR 110 (120)
T ss_pred --CCCCCceEEEEeCCHHHHHHHHHHHHHc----CCceecCC-cc-------cCC------C----CCceEEEEECCCCC
Confidence 134688999999 5789999999999 99987532 21 000 0 01123466788898
Q ss_pred EEEEEcc
Q 013898 362 LLQIFTK 368 (434)
Q Consensus 362 llqifT~ 368 (434)
.+.+++.
T Consensus 111 ~iel~~~ 117 (120)
T cd08362 111 LIEFSAD 117 (120)
T ss_pred EEEEEec
Confidence 8888764
No 95
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=98.80 E-value=1.5e-06 Score=83.15 Aligned_cols=217 Identities=15% Similarity=0.110 Sum_probs=124.4
Q ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCC
Q 013898 30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTF 109 (434)
Q Consensus 30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~ 109 (434)
-+.+.-|+|.|+|++.+..||++++|+++..+.. .+.++..|+..++..+..... . +|
T Consensus 8 ~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~--------~~v~L~vgg~~LL~L~q~~~a-~-~~------------ 65 (265)
T COG2514 8 PTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD--------GSVTLGVGGTPLLTLEQFPDA-R-RP------------ 65 (265)
T ss_pred CcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC--------ceEEEeeCCEEEEEEEeCCCC-C-CC------------
Confidence 3678999999999999999999999999997743 356677777644444422111 0 00
Q ss_pred ChhHHhHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCCCCC-CccccCceEEEEEEecCCeEEEEee-ccCcCCC
Q 013898 110 DHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSP-PVILDNLAVIAEVQLYGDVVLRYVS-YKDKANH 184 (434)
Q Consensus 110 ~~~~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~-p~~~~~~~~~~~i~~~Gg~~~~fvd-~~~~~~~ 184 (434)
..+..|..|+||.+++ +..++.+|...|..+... .... .|.- -+.++.|.-+++.- +|...+
T Consensus 66 ---------~~~~aGLyH~AfLlP~r~~L~~~l~hl~~~~~~l~Ga~DH~v-SEAl--Yl~DPEGNGIEiYaDrp~~~W- 132 (265)
T COG2514 66 ---------PPRAAGLYHTAFLLPTREDLARVLNHLAEEGIPLVGASDHLV-SEAL--YLEDPEGNGIEIYADRPRSTW- 132 (265)
T ss_pred ---------CccccceeeeeeecCCHHHHHHHHHHHHhcCCcccccCcchh-heee--eecCCCCCeEEEEecCChHHh-
Confidence 1244699999999995 677888888998875311 1111 0100 01123333333332 111111
Q ss_pred CCCCCCC-----ccCC-----C-CC-CC-CcccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCce
Q 013898 185 LDFLPGF-----EPTD-----E-IS-SF-PLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLN 251 (434)
Q Consensus 185 g~~~p~f-----~~~~-----~-~~-~~-~~~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~ 251 (434)
.|..+- .+.. . .. .. ..-..-+.|-||.+.|.|++++.+||+++|||+...+.+ .
T Consensus 133 -~~~~~~v~m~t~~ld~~~ll~~~~~~~~~g~p~~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~~~-----------~ 200 (265)
T COG2514 133 -DWQNDQVKMDTEPLDVEALLEEATKEPWTGLPAGTIIGHVHLKVADLEEAEQFYEDVLGLEVTARGP-----------S 200 (265)
T ss_pred -cccCCeeeecccccCHHHHhhhccccccccCCCCcEEeEEEEEeCCHHHHHHHHHHhcCCeeeecCC-----------c
Confidence 121110 0000 0 00 00 001135789999999999999999999999999876521 1
Q ss_pred EEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCCceEEEEEeCC
Q 013898 252 SVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSED 300 (434)
Q Consensus 252 s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdD 300 (434)
..++.+++=...|..|.-.....++ ....-.|+-.+.+.+.+
T Consensus 201 A~F~a~G~YHHHia~N~W~s~~~~~-------~~~~~~GLa~~~i~~~~ 242 (265)
T COG2514 201 ALFLASGDYHHHLAANTWNSRGARP-------RNANASGLAWLEIHTPD 242 (265)
T ss_pred ceEEecCCcceeEEEeccccCCCCC-------CCCCCCCcceEEEEcCC
Confidence 2334444444566666543110000 01134678888888876
No 96
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=98.80 E-value=7.3e-08 Score=86.07 Aligned_cols=120 Identities=13% Similarity=-0.024 Sum_probs=72.0
Q ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCCh
Q 013898 32 RFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDH 111 (434)
Q Consensus 32 ~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~ 111 (434)
+|+||.|+|+|++++++||+++|||++..+...+.. ......+++.++.. .... .
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~--------------------~ 55 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGP-GNPVAAFLRLDRGE----EYVD--------------------H 55 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCC-CCcEEEEEecCCCC----Cccc--------------------c
Confidence 489999999999999999999999998755322100 01122333322100 0000 0
Q ss_pred hHHhHHHHhcCCceeEEEEEecCHHHHH---HHHHHcCCCCCCCCcccc-CceEEEEEEecCCeEEEEee
Q 013898 112 AACRSFAASHGLAARSIAVEVEDADVAF---NTSVAHGAKPSSPPVILD-NLAVIAEVQLYGDVVLRYVS 177 (434)
Q Consensus 112 ~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~---~ra~~~Ga~~~~~p~~~~-~~~~~~~i~~~Gg~~~~fvd 177 (434)
..+.- ....+.++.||||+|+|++++. ++++++|+++...|.... +.....-++++.|..+++..
T Consensus 56 ~~~~l-~~~~~~g~~Hiaf~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~ 124 (153)
T cd07257 56 HTLAL-AQGPESGVHHAAFEVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYT 124 (153)
T ss_pred hHHHH-hcCCCCceeEEEEEcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEc
Confidence 01111 1222468999999999999886 999999998765543211 11223334566666666653
No 97
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=98.78 E-value=1.4e-07 Score=79.09 Aligned_cols=106 Identities=22% Similarity=0.256 Sum_probs=70.5
Q ss_pred eeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcC
Q 013898 208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNE 287 (434)
Q Consensus 208 ~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~ 287 (434)
+|+||++.|+|++++.+||+ .|||+..... .. . .....+.+...+.+..+ .
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~----~~-----~--~~~~~~~~~~~~~~~~~-----------------~ 52 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE-AFGLDVREEG----DG-----L--ELRTAGNDHRWARLLEG-----------------A 52 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH-HhCCcEEeec----Cc-----e--EEEecCCCceEEEeecC-----------------C
Confidence 69999999999999999997 7999986431 00 1 11111223344444332 1
Q ss_pred CCCceEEEEE--eCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEE
Q 013898 288 GAGVQHLALV--SEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQI 365 (434)
Q Consensus 288 G~GvqHIAf~--vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqi 365 (434)
+.+++|++|. ++|+++++++|++. |++++..| ... + ..-++-.|++|..+++
T Consensus 53 ~~~~~~~~~~~~~~d~~~~~~~l~~~----Gi~~~~~~-~~~--------~-------------~~~~~~~DP~Gn~iel 106 (112)
T cd08344 53 RKRLAYLSFGIFEDDFAAFARHLEAA----GVALAAAP-PGA--------D-------------PDGVWFRDPDGNLLQV 106 (112)
T ss_pred CCceeeEEEEeEhhhHHHHHHHHHHc----CCceecCC-CcC--------C-------------CCEEEEECCCCCEEEE
Confidence 2346676555 58999999999999 99987542 110 0 1125778999999999
Q ss_pred Ecc
Q 013898 366 FTK 368 (434)
Q Consensus 366 fT~ 368 (434)
++-
T Consensus 107 ~~~ 109 (112)
T cd08344 107 KVA 109 (112)
T ss_pred ecC
Confidence 864
No 98
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=98.78 E-value=5.7e-08 Score=95.54 Aligned_cols=114 Identities=14% Similarity=0.170 Sum_probs=78.6
Q ss_pred eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhh
Q 013898 206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH 285 (434)
Q Consensus 206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~ 285 (434)
+.+|+|+++.|+|++++.+||+++|||+..... +. + ..++..+.....+.+...
T Consensus 1 ~~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~---~~-----~--~~~~~~~~~~~~~~l~~~---------------- 54 (286)
T TIGR03213 1 VRGLGYLGIGVSDVDAWREFATEVLGMMVASEG---EN-----D--ALYLRLDSRAHRIAVHPG---------------- 54 (286)
T ss_pred CceeeEEEEEeCCHHHHHHHHHhccCcccccCC---CC-----c--eEEEEcCCCceEEEEEEC----------------
Confidence 468999999999999999999999999875321 11 1 123333333445555332
Q ss_pred cCCCCceEEEEEeCC---HHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceE
Q 013898 286 NEGAGVQHLALVSED---IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL 362 (434)
Q Consensus 286 ~~G~GvqHIAf~vdD---I~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~l 362 (434)
...++.|+||.|+| +.+..++|+++ |+++...| .. .... --....++-.|++|..
T Consensus 55 -~~~~~~~~~f~V~~~~~l~~~~~~L~~~----Gv~~~~~~-~~---~~~~-------------~~~~~~~~f~DPdGn~ 112 (286)
T TIGR03213 55 -ESDDLAYAGWEVADEAGLDQVKEKLEKA----GVAVTVAS-AA---EARE-------------RGVLGLIKFTDPGGNP 112 (286)
T ss_pred -CcCCeeeEeeeeCCHHHHHHHHHHHHHc----CCceEECC-HH---Hhhh-------------ccceEEEEEECCCCCE
Confidence 12458899999999 88899999999 99988654 11 0100 0123457888999999
Q ss_pred EEEEc
Q 013898 363 LQIFT 367 (434)
Q Consensus 363 lqifT 367 (434)
|++|+
T Consensus 113 lEl~~ 117 (286)
T TIGR03213 113 LEIYY 117 (286)
T ss_pred EEEEE
Confidence 99996
No 99
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=98.78 E-value=4.7e-08 Score=89.32 Aligned_cols=171 Identities=19% Similarity=0.122 Sum_probs=84.9
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChh
Q 013898 33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHA 112 (434)
Q Consensus 33 l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~ 112 (434)
||||.++|+|++++.++|.+.|||.++....-+.+ .+...++.-++..|+|.++. +. .+ .+.+..-
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~--GT~N~li~f~~~YlEli~i~-~~---~~--------~~~~~~~ 66 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGW--GTANALIPFGDGYLELIAID-PE---AP--------APDRGRW 66 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT---EEEEEEE-SSSEEEEEEES--H---HH--------STGGGT-
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCC--ccEEEEEeeCCceEEEEEeC-Cc---cc--------ccccccc
Confidence 79999999999999999988999998875433331 13344444455588888852 21 00 0000000
Q ss_pred HHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCc-eEEEEEEecCCeEEEEeeccCcCCC-CCCCCC
Q 013898 113 ACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNL-AVIAEVQLYGDVVLRYVSYKDKANH-LDFLPG 190 (434)
Q Consensus 113 ~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~-~~~~~i~~~Gg~~~~fvd~~~~~~~-g~~~p~ 190 (434)
...+.+ .+++|+..+||+++|+++..+++.+.|.. ...+...++. +.+..+ +.. ++... +..+|-
T Consensus 67 ~~~~~~-~~~~g~~~~~l~t~d~~~~~~~l~~~G~~-~~~r~~~dG~~~~w~~~---------~~~--~~~~p~~~~~Pf 133 (175)
T PF13468_consen 67 FGLDRL-AGGEGLYGWALRTDDIEAVAARLRAAGLD-AGSRVRPDGGDLRWRLA---------FPE--DGALPFGGLLPF 133 (175)
T ss_dssp TTTHHH-HT--EEEEEEEE-S-HHHHHHHHHTTT-E-EEEEEEEEE-EEEEEEE---------EEE---SS---SS---E
T ss_pred eechhh-cCCCCeEEEEEecCCHHHHHHHHHhcCCC-CCCcCcCCCCcceEEEE---------EeC--CcccccCCCCcE
Confidence 001112 36789999999999999999999999976 1112222111 111111 111 11000 112333
Q ss_pred CccCCCCCC--CCcccceeeeeeeeEecCCHHHHHHHHHHhh
Q 013898 191 FEPTDEISS--FPLDYGIRRLDHAVGNVPELAPAVAYVKSFT 230 (434)
Q Consensus 191 f~~~~~~~~--~~~~~~l~~iDHv~i~V~dl~~~~~fY~~vL 230 (434)
|-.+..... ...+.+..+|++|.+.++|.+++.++|.++|
T Consensus 134 ~i~~~~~~~~~~~h~ng~~~i~~v~i~~~d~~~~~~~~~~l~ 175 (175)
T PF13468_consen 134 FIQWETPHPEWARHPNGALGITRVVIAVPDPDAAAARYARLL 175 (175)
T ss_dssp EEEESS-CCHHTTT--TTEEEEEEEEEETTHHHHHHHHHHH-
T ss_pred EEEeCCCCcccccCCCccceEEEEEEEeCCHHHHHHHHHhhC
Confidence 322211100 1234568999999999999999999999875
No 100
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=98.78 E-value=1.2e-07 Score=78.94 Aligned_cols=83 Identities=16% Similarity=0.133 Sum_probs=60.0
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChhHH
Q 013898 35 HVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAAC 114 (434)
Q Consensus 35 HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (434)
||++.|+|++++.+||++.|||+...+.+ ....++.++..+.+......
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~----------------------- 49 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS--------KEAYFELAGLWICLMEEDSL----------------------- 49 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC--------ceeEEEecCeEEEeccCCCc-----------------------
Confidence 89999999999999999999999876532 12234556666666432110
Q ss_pred hHHHHhcCCceeEEEEEe--cCHHHHHHHHHHcCCCCCCC
Q 013898 115 RSFAASHGLAARSIAVEV--EDADVAFNTSVAHGAKPSSP 152 (434)
Q Consensus 115 ~~~l~~hG~gv~~Iaf~V--~Dvd~a~~ra~~~Ga~~~~~ 152 (434)
...+.+..|+||.| +|++++++++.++|+++...
T Consensus 50 ----~~~~~~~~hiaf~v~~~d~~~~~~~l~~~G~~~~~~ 85 (113)
T cd08345 50 ----QGPERTYTHIAFQIQSEEFDEYTERLKALGVEMKPE 85 (113)
T ss_pred ----CCCCCCccEEEEEcCHHHHHHHHHHHHHcCCccCCC
Confidence 01123567999999 47999999999999987543
No 101
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=98.78 E-value=1.3e-07 Score=79.15 Aligned_cols=84 Identities=19% Similarity=0.249 Sum_probs=62.0
Q ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeC---CEEEEEEcCCCCCCCcccccCCCCCCCC
Q 013898 31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG---DLRFVFTAPYSPSISDAADAGNSSASLP 107 (434)
Q Consensus 31 ~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G---~i~~vl~~p~~~~~~~~~~~~~~~~~~~ 107 (434)
++++||.|.|+|++++.+||++.|||++....+ ....++.+ ...+.+...
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~------------------- 53 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA--------GSVYLRCSEDDHHSLVLTEG------------------- 53 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC--------CeEEEecCCCCcEEEEEEeC-------------------
Confidence 479999999999999999999999999886632 12344443 233333220
Q ss_pred CCChhHHhHHHHhcCCceeEEEEEec---CHHHHHHHHHHcCCCCCCCCc
Q 013898 108 TFDHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPV 154 (434)
Q Consensus 108 ~~~~~~~~~~l~~hG~gv~~Iaf~V~---Dvd~a~~ra~~~Ga~~~~~p~ 154 (434)
...++.|+||.|+ |++++.++++++|+++...|.
T Consensus 54 -------------~~~~~~h~~~~v~~~~~v~~~~~~l~~~g~~~~~~~~ 90 (117)
T cd07240 54 -------------DEPGVDALGFEVASEEDLEALAAHLEAAGVAPEEASD 90 (117)
T ss_pred -------------CCCCceeEEEEcCCHHHHHHHHHHHHHcCCceEEcCc
Confidence 1136679999998 689999999999998766554
No 102
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=98.77 E-value=1.8e-07 Score=79.59 Aligned_cols=86 Identities=17% Similarity=0.167 Sum_probs=62.4
Q ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCCh
Q 013898 32 RFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDH 111 (434)
Q Consensus 32 ~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~ 111 (434)
+|+||.|.|+|++++.+||+++|||++....+ ....+..++..+.+......
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~-------------------- 52 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD--------KGAYLEAGDLWLCLSVDANV-------------------- 52 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC--------CceEEecCCEEEEEecCCCC--------------------
Confidence 58999999999999999999999999876532 12334556665554321100
Q ss_pred hHHhHHHHhcCCceeEEEEEe--cCHHHHHHHHHHcCCCCCCCC
Q 013898 112 AACRSFAASHGLAARSIAVEV--EDADVAFNTSVAHGAKPSSPP 153 (434)
Q Consensus 112 ~~~~~~l~~hG~gv~~Iaf~V--~Dvd~a~~ra~~~Ga~~~~~p 153 (434)
....+..|+||+| +|+++++++++++|++++.++
T Consensus 53 --------~~~~~~~hi~f~v~~~dl~~~~~~l~~~G~~~~~~~ 88 (121)
T cd07244 53 --------GPAKDYTHYAFSVSEEDFASLKEKLRQAGVKEWKEN 88 (121)
T ss_pred --------CCCCCeeeEEEEeCHHHHHHHHHHHHHcCCcccCCC
Confidence 0123567899998 579999999999999876544
No 103
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=98.76 E-value=2.9e-07 Score=80.02 Aligned_cols=109 Identities=16% Similarity=0.116 Sum_probs=69.8
Q ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeC--C--EEEEEEcCCCCCCCcccccCCCCCCC
Q 013898 31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG--D--LRFVFTAPYSPSISDAADAGNSSASL 106 (434)
Q Consensus 31 ~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G--~--i~~vl~~p~~~~~~~~~~~~~~~~~~ 106 (434)
.+++||.|.|+|++++.+||++.|||+++.+.. . ....++.+ + ..+.+....
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~--~-----~~~~~~~~~~~~~~~i~l~~~~----------------- 57 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK--G-----RGAFLRAAGGGDHHNLFLIKTP----------------- 57 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec--C-----cEEEEECCCCCCCcEEEEecCC-----------------
Confidence 579999999999999999999999999876532 1 12334432 1 234443210
Q ss_pred CCCChhHHhHHHHhcCCceeEEEEEecCHHHHH---HHHHHcCCCCCCCCcccc-CceEEEEEEecCCeEEEEe
Q 013898 107 PTFDHAACRSFAASHGLAARSIAVEVEDADVAF---NTSVAHGAKPSSPPVILD-NLAVIAEVQLYGDVVLRYV 176 (434)
Q Consensus 107 ~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~---~ra~~~Ga~~~~~p~~~~-~~~~~~~i~~~Gg~~~~fv 176 (434)
....|+.||||+|+|++++. +++.++|+++...|.... +.....-++.++|..++|.
T Consensus 58 -------------~~~~g~~hiaf~v~d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~ 118 (134)
T cd08360 58 -------------APMAGFHHAAFEVGDIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYG 118 (134)
T ss_pred -------------CCCCcceEEEEEeCCHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEE
Confidence 01357889999999987776 599999998765553221 1111223445555555544
No 104
>PRK10291 glyoxalase I; Provisional
Probab=98.76 E-value=3.3e-07 Score=78.91 Aligned_cols=114 Identities=17% Similarity=0.150 Sum_probs=73.4
Q ss_pred EEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC----EEEEEEcCCCCCCCcccccCCCCCCCCCCChhH
Q 013898 38 FWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD----LRFVFTAPYSPSISDAADAGNSSASLPTFDHAA 113 (434)
Q Consensus 38 ~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~----i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (434)
+.|+|++++++||+++|||+.+.....+.. ......+..++ ..+.+.....
T Consensus 2 l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~----------------------- 56 (129)
T PRK10291 2 LRVGDLQRSIDFYTNVLGMKLLRTSENPEY--KYSLAFVGYGPETEEAVIELTYNWG----------------------- 56 (129)
T ss_pred EEecCHHHHHHHHHhccCCEEEEeecCCCC--cEEEEEEccCCCCCcceEEeeecCC-----------------------
Confidence 689999999999999999998765432221 12333333332 1223321100
Q ss_pred HhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCcccc-CceEEEEEEecCCeEEEEeec
Q 013898 114 CRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILD-NLAVIAEVQLYGDVVLRYVSY 178 (434)
Q Consensus 114 ~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~-~~~~~~~i~~~Gg~~~~fvd~ 178 (434)
...+ ..|.+..|+||+|+|+++++++++++|+++...|.... +...++.|+.+.|..+.|++.
T Consensus 57 ~~~~--~~g~~~~hlaf~V~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~ 120 (129)
T PRK10291 57 VDKY--ELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEE 120 (129)
T ss_pred CCCC--cCCCCeeEEEEEeCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEc
Confidence 0010 13457889999999999999999999998876553221 223445567777778888774
No 105
>PRK06724 hypothetical protein; Provisional
Probab=98.75 E-value=1.6e-07 Score=81.47 Aligned_cols=87 Identities=16% Similarity=0.242 Sum_probs=61.4
Q ss_pred cceEEEEEEEeCCHHHHHHHHHHhc---CCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCC
Q 013898 30 VNRFHHVEFWCTDATNTARRFSWGL---GMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASL 106 (434)
Q Consensus 30 i~~l~HI~~~V~da~~a~~fy~~~l---Gf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~ 106 (434)
..+++||+|.|+|++++++||++.| ||+.... ..+..|+..+.|..+...
T Consensus 5 ~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~------------~~~~~g~~~l~l~~~~~~--------------- 57 (128)
T PRK06724 5 RAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNE------------VAYSTGESEIYFKEVDEE--------------- 57 (128)
T ss_pred CcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeee------------EeeeCCCeeEEEecCCcc---------------
Confidence 5689999999999999999999966 6664321 113345555555432100
Q ss_pred CCCChhHHhHHHHhcCCceeEEEEEe---cCHHHHHHHHHHcCCCCCCCCcc
Q 013898 107 PTFDHAACRSFAASHGLAARSIAVEV---EDADVAFNTSVAHGAKPSSPPVI 155 (434)
Q Consensus 107 ~~~~~~~~~~~l~~hG~gv~~Iaf~V---~Dvd~a~~ra~~~Ga~~~~~p~~ 155 (434)
+ ....|..|+||+| +|++++++++.++|++++.+|..
T Consensus 58 -----------~-~~~~g~~h~af~v~~~~dvd~~~~~l~~~G~~~~~~p~~ 97 (128)
T PRK06724 58 -----------I-VRTLGPRHICYQAINRKVVDEVAEFLSSTKIKIIRGPME 97 (128)
T ss_pred -----------c-cCCCCceeEEEecCChHHHHHHHHHHHHCCCEEecCCcc
Confidence 0 0124678999998 68999999999999987766643
No 106
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=98.74 E-value=1.9e-07 Score=78.76 Aligned_cols=86 Identities=21% Similarity=0.235 Sum_probs=60.5
Q ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCE-EEEEEcCCCCCCCcccccCCCCCCCCC
Q 013898 30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDL-RFVFTAPYSPSISDAADAGNSSASLPT 108 (434)
Q Consensus 30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i-~~vl~~p~~~~~~~~~~~~~~~~~~~~ 108 (434)
+.+|+||+|+|+|++++.+||++.|||+.....+ ....++.++. ..++.....
T Consensus 1 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~------------------ 54 (120)
T cd08362 1 VTALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD--------GIVYLRATGSEHHILRLRRS------------------ 54 (120)
T ss_pred CceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC--------CEEEEECCCCccEEEEeccC------------------
Confidence 4789999999999999999999999999876532 1233443322 222211100
Q ss_pred CChhHHhHHHHhcCCceeEEEEEe---cCHHHHHHHHHHcCCCCCCCC
Q 013898 109 FDHAACRSFAASHGLAARSIAVEV---EDADVAFNTSVAHGAKPSSPP 153 (434)
Q Consensus 109 ~~~~~~~~~l~~hG~gv~~Iaf~V---~Dvd~a~~ra~~~Ga~~~~~p 153 (434)
..+++.+++|.| +|+++++++++++|+++..+|
T Consensus 55 ------------~~~~~~~~~~~v~~~~~l~~~~~~l~~~G~~~~~~~ 90 (120)
T cd08362 55 ------------DRNRLDVVSFSVASRADVDALARQVAARGGTVLSEP 90 (120)
T ss_pred ------------CCCCCceEEEEeCCHHHHHHHHHHHHHcCCceecCC
Confidence 012456899999 578999999999999876554
No 107
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=98.74 E-value=1.9e-07 Score=79.39 Aligned_cols=85 Identities=21% Similarity=0.232 Sum_probs=60.3
Q ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe---CC-EEEEEEcCCCCCCCcccccCCCCCC
Q 013898 30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS---GD-LRFVFTAPYSPSISDAADAGNSSAS 105 (434)
Q Consensus 30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~---G~-i~~vl~~p~~~~~~~~~~~~~~~~~ 105 (434)
+++++||+|.|+|++++.+||++.|||++..... .+ ...++. ++ ..+.+..
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~-----~~~~~~~~~~~~~~~~l~~------------------ 56 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--QG-----RVYLKAWDEFDHHSIVLRE------------------ 56 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--Cc-----eEEEEccCCCcccEEEecc------------------
Confidence 6899999999999999999999999999875531 11 122222 11 2222211
Q ss_pred CCCCChhHHhHHHHhcCCceeEEEEEec---CHHHHHHHHHHcCCCCCCCC
Q 013898 106 LPTFDHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPP 153 (434)
Q Consensus 106 ~~~~~~~~~~~~l~~hG~gv~~Iaf~V~---Dvd~a~~ra~~~Ga~~~~~p 153 (434)
....++.|+||+|. |++++++++.++|+++...|
T Consensus 57 --------------~~~~~~~hiaf~v~~~~dv~~~~~~l~~~G~~~~~~~ 93 (122)
T cd07265 57 --------------ADTAGLDFMGFKVLDDADLEKLEARLQAYGVAVERIP 93 (122)
T ss_pred --------------CCCCCeeEEEEEeCCHHHHHHHHHHHHHCCCcEEEcc
Confidence 01236779999997 78999999999999865444
No 108
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=98.74 E-value=1e-07 Score=80.33 Aligned_cols=115 Identities=18% Similarity=0.191 Sum_probs=73.4
Q ss_pred eeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCC
Q 013898 211 HAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAG 290 (434)
Q Consensus 211 Hv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~G 290 (434)
+..+.|+|++++.+||+++|||+...... .. ..+..+++.+.|.+..+.. ... ........+.|
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~~----------~~-~~~~~~~~~~~l~l~~~~~----~~~-~~~~~~~~~~~ 67 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDSD----------WY-VSLRSPDGGVELAFMLPGH----ETV-PAAQYQFQGQG 67 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEeccC----------cE-EEEecCCCceEEEEccCCC----CCC-cchhcccCCce
Confidence 56789999999999999999999875411 11 1223333336666654321 110 00111223455
Q ss_pred ceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEE
Q 013898 291 VQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIF 366 (434)
Q Consensus 291 vqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqif 366 (434)
+ |++|.|+||++++++|+++ |++++..| ... + .....++-+|++|++++++
T Consensus 68 ~-~~~~~v~did~~~~~l~~~----G~~~~~~~-~~~--------~-----------~g~~~~~~~DP~G~~ie~~ 118 (119)
T cd08359 68 L-ILNFEVDDVDAEYERLKAE----GLPIVLPL-RDE--------P-----------WGQRHFIVRDPNGVLIDIV 118 (119)
T ss_pred E-EEEEEECCHHHHHHHHHhc----CCCeeecc-ccC--------C-----------CcceEEEEECCCCCEEEEE
Confidence 6 8999999999999999999 99887543 321 0 0112445688899988875
No 109
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=98.74 E-value=2.8e-07 Score=78.64 Aligned_cols=87 Identities=16% Similarity=0.174 Sum_probs=60.6
Q ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCC
Q 013898 30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTF 109 (434)
Q Consensus 30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~ 109 (434)
.++++||.|.|+|++++++||++.|||+.....+ . . ..+.-.++..+.+..+.
T Consensus 2 ~~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~--~-~~~~~~~~~~l~~~~~~-------------------- 54 (123)
T cd08351 2 TVTLNHTIVPARDREASAEFYAEILGLPWAKPFG----P--F-AVVKLDNGVSLDFAQPD-------------------- 54 (123)
T ss_pred cceEeEEEEEcCCHHHHHHHHHHhcCCEeeeccC----C--E-EEEEcCCCcEEEEecCC--------------------
Confidence 3679999999999999999999999999876321 0 1 11111233444443310
Q ss_pred ChhHHhHHHHhcCCceeEEEEEec--CHHHHHHHHHHcCCCCCCCCc
Q 013898 110 DHAACRSFAASHGLAARSIAVEVE--DADVAFNTSVAHGAKPSSPPV 154 (434)
Q Consensus 110 ~~~~~~~~l~~hG~gv~~Iaf~V~--Dvd~a~~ra~~~Ga~~~~~p~ 154 (434)
...+..|+||.|+ |+++++++++++|+++...|.
T Consensus 55 -----------~~~~~~h~a~~v~~~dl~~~~~~l~~~G~~~~~~~~ 90 (123)
T cd08351 55 -----------GEIPPQHYAFLVSEEEFDRIFARIRERGIDYWADPQ 90 (123)
T ss_pred -----------CCCCcceEEEEeCHHHHHHHHHHHHHcCCceecCCc
Confidence 1123458899886 699999999999998766654
No 110
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=98.73 E-value=2.7e-07 Score=77.65 Aligned_cols=84 Identities=20% Similarity=0.248 Sum_probs=59.3
Q ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe-CCEEEEEEcCCCCCCCcccccCCCCCCCCC
Q 013898 30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS-GDLRFVFTAPYSPSISDAADAGNSSASLPT 108 (434)
Q Consensus 30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~-G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~ 108 (434)
|.+++||.+.|+|++++.+||++ |||+...+.. . ...++. |+..+++.-..
T Consensus 1 ~~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~--~------~~~~~~~~~~~~~~~~~~------------------- 52 (113)
T cd07267 1 LTDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD--D------ELYYRGYGTDPFVYVARK------------------- 52 (113)
T ss_pred CcEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC--C------eEEEecCCCccEEEEccc-------------------
Confidence 57899999999999999999998 9999876532 1 223443 33323322100
Q ss_pred CChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCC
Q 013898 109 FDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSP 152 (434)
Q Consensus 109 ~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~ 152 (434)
....++.++||.|+|.++..+.+.+.|+..+..
T Consensus 53 -----------~~~~~~~~~af~v~~~~~~~~~~~~~g~~~~~~ 85 (113)
T cd07267 53 -----------GEKARFVGAAFEAASRADLEKAAALPGASVIDD 85 (113)
T ss_pred -----------CCcCcccEEEEEECCHHHHHHHHHcCCCeeecC
Confidence 012366789999999999999999999876543
No 111
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=98.73 E-value=6.1e-08 Score=95.38 Aligned_cols=116 Identities=15% Similarity=0.118 Sum_probs=90.7
Q ss_pred CCCCCCCCcceEEEEEEEeC--CHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe--CCEEEEEEcCCCCCCCccc
Q 013898 22 NPKSDRFRVNRFHHVEFWCT--DATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS--GDLRFVFTAPYSPSISDAA 97 (434)
Q Consensus 22 ~~~~~~~~i~~l~HI~~~V~--da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~--G~i~~vl~~p~~~~~~~~~ 97 (434)
++.+....+..||||...|. ..+.|+.||++.|||+...+-++++--....|-++.+ |.++|-||++.+.
T Consensus 157 ~~~~~~~g~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp~G~vrlplN~s~~~------ 230 (363)
T COG3185 157 QGASGGVGLTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSPCGKVRLPLNESADD------ 230 (363)
T ss_pred cccccccCceeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecCCCcEEeecccCCCc------
Confidence 44445556789999998876 6679999999999999998776554322245544444 8899999886543
Q ss_pred ccCCCCCCCCCCChhHHhHHHHh-cCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccc
Q 013898 98 DAGNSSASLPTFDHAACRSFAAS-HGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVIL 156 (434)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~-hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~ 156 (434)
.+++.+|+.. ||.||.||||.++|+-++.++++++|++.+..|.+.
T Consensus 231 -------------~sqi~efl~~y~G~GIQHIA~~T~dI~~tv~~lr~rG~~fl~ip~tY 277 (363)
T COG3185 231 -------------KSQIGEFLREYRGEGIQHIAFGTDDIYATVAALRERGVKFLPIPETY 277 (363)
T ss_pred -------------hhHHHHHHHHhCCCcceEEEecccHHHHHHHHHHHcCCccCCCchhH
Confidence 2578899854 688999999999999999999999999988767654
No 112
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.73 E-value=4.2e-07 Score=78.89 Aligned_cols=115 Identities=13% Similarity=0.128 Sum_probs=72.7
Q ss_pred eeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCc-----ccccCceEEE-EEc--CCCceEEEecccCCCCCCCchH
Q 013898 208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVG-----TSESGLNSVV-LAN--NDEMVLLPMNEPVFGTKRKSQI 279 (434)
Q Consensus 208 ~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~-----~~~~g~~s~~-l~~--~~g~v~i~L~e~~~g~~~~s~i 279 (434)
++.|+++.|.|++++++||+++|||+..++.+.++.. ..+.|-.+.+ +.. ......++|..... ..
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~---~~--- 75 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYG---IG--- 75 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCC---CC---
Confidence 6789999999999999999999999987765432210 1111222222 221 22344566654321 11
Q ss_pred HHHHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCC
Q 013898 280 QTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQ 359 (434)
Q Consensus 280 ~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~ 359 (434)
. ...|.| |+||+++|+ ++.++|++. |+++...| . +++.=.|++
T Consensus 76 -~---~~~g~~--~~hlav~~~-d~~~~l~~~----Gv~~~~~~-~-------------------------~~~fi~DPD 118 (127)
T cd08358 76 -D---YELGND--FLGITIHSK-QAVSNAKKH----NWPVTEVE-D-------------------------GVYEVKAPG 118 (127)
T ss_pred -C---CCCCCC--EEEEEEECH-HHHHHHHHC----CCceecCC-C-------------------------CEEEEECCC
Confidence 0 123445 788888888 666999999 99877643 1 255667888
Q ss_pred ceEEEE
Q 013898 360 GTLLQI 365 (434)
Q Consensus 360 g~llqi 365 (434)
|+-+.+
T Consensus 119 G~~ie~ 124 (127)
T cd08358 119 GYKFYL 124 (127)
T ss_pred CCEEEE
Confidence 887765
No 113
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=98.72 E-value=3.8e-07 Score=78.76 Aligned_cols=111 Identities=19% Similarity=0.164 Sum_probs=74.8
Q ss_pred EEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCE--EEEEEcCCCCCCCcccccCCCCCCCCCCCh
Q 013898 34 HHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDL--RFVFTAPYSPSISDAADAGNSSASLPTFDH 111 (434)
Q Consensus 34 ~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i--~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~ 111 (434)
+||.|.|+|++++.+||++.|||++....+.+ + ....+.++.++. .+.+..
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~--~~~~~~~~~~~~~~~l~~~~------------------------ 53 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-G--VDAAAFLRCDEDHHDLALFP------------------------ 53 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-C--ceeEEEEEcCCCcceEEEEc------------------------
Confidence 59999999999999999999999987664422 1 112334444332 232221
Q ss_pred hHHhHHHHhcCCceeEEEEEecCHH---HHHHHHHHcCCCCCCCCcccc-CceEEEEEEecCCeEEEEeec
Q 013898 112 AACRSFAASHGLAARSIAVEVEDAD---VAFNTSVAHGAKPSSPPVILD-NLAVIAEVQLYGDVVLRYVSY 178 (434)
Q Consensus 112 ~~~~~~l~~hG~gv~~Iaf~V~Dvd---~a~~ra~~~Ga~~~~~p~~~~-~~~~~~~i~~~Gg~~~~fvd~ 178 (434)
..+..++.+++|.|+|++ +++++++++|++++.+|.... +......++.+.|..+.|+..
T Consensus 54 -------~~~~~~~~hl~~~v~d~~~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~ 117 (131)
T cd08343 54 -------GPERPGLHHVAFEVESLDDILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAE 117 (131)
T ss_pred -------CCCCCCeeEEEEEcCCHHHHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcC
Confidence 012457889999999874 788999999998876654321 123345567777777777763
No 114
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.70 E-value=2.2e-07 Score=78.78 Aligned_cols=108 Identities=14% Similarity=0.141 Sum_probs=66.3
Q ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCC
Q 013898 31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFD 110 (434)
Q Consensus 31 ~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~ 110 (434)
+++.|+.++|.|++++++||++.|||++....+ . ...+ .++..+.+....... . .
T Consensus 1 ~~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~--~------~~~~-~~~~~l~~~~~~~~~-------------~--~- 55 (120)
T cd09011 1 MKFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG--E------NVTF-EGGFALQEGYSWLEG-------------I--S- 55 (120)
T ss_pred CEEEEEEEEECCHHHHHHHHHHhcCCEEeeccC--c------eEEE-eccceeccchhhhcc-------------C--C-
Confidence 468999999999999999999999999764321 0 1122 233333221100000 0 0
Q ss_pred hhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCC-CCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898 111 HAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGA-KPSSPPVILDNLAVIAEVQLYGDVVLRYVSY 178 (434)
Q Consensus 111 ~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga-~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~ 178 (434)
... ...+.+-.+++|.|+|+++++++++++|+ +++.+|... +||...++|.||
T Consensus 56 ~~~-----~~~~~~~~~l~~~v~dvd~~~~~l~~~g~~~~~~~~~~~----------~~g~r~~~~~DP 109 (120)
T cd09011 56 KAD-----IIEKSNNFELYFEEEDFDAFLDKLKRYDNIEYVHPIKEH----------PWGQRVVRFYDP 109 (120)
T ss_pred ccc-----ccccCCceEEEEEehhhHHHHHHHHhcCCcEEecCcccC----------CCccEEEEEECC
Confidence 000 01123346899999999999999999986 566666543 345555666653
No 115
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=98.70 E-value=2.2e-07 Score=78.54 Aligned_cols=111 Identities=17% Similarity=0.224 Sum_probs=74.2
Q ss_pred eeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCC
Q 013898 211 HAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAG 290 (434)
Q Consensus 211 Hv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~G 290 (434)
|+.+.|+|++++.+||+++|||+...... . ...+.. .+..+.+.+..+.. . ...|
T Consensus 4 hv~l~v~d~~~a~~FY~~~lG~~~~~~~~----~-----~~~~~~--~~~~~~~~~~~~~~----~----------~~~~ 58 (120)
T cd07254 4 HVALNVDDLEASIAFYSKLFGVEPTKVRD----D-----YAKFLL--EDPRLNFVLNERPG----A----------PGGG 58 (120)
T ss_pred EEEEEeCCHHHHHHHHHHHhCCeEecccC----C-----eeEEEe--cCCceEEEEecCCC----C----------CCCC
Confidence 99999999999999999999998754321 0 112222 22345555544321 0 1157
Q ss_pred ceEEEEEeCC---HHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEEc
Q 013898 291 VQHLALVSED---IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFT 367 (434)
Q Consensus 291 vqHIAf~vdD---I~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqifT 367 (434)
++|+||.|+| +++..++|+++ |+++...| ..-+. . .....+|-+|++|..+.+++
T Consensus 59 ~~h~~f~v~~~~dl~~~~~~l~~~----G~~~~~~~-~~~~~------~-----------~~~~~~~~~DP~G~~ie~~~ 116 (120)
T cd07254 59 LNHLGVQVDSAEEVAEAKARAEAA----GLPTFKEE-DTTCC------Y-----------AVQDKVWVTDPDGNAWEVFV 116 (120)
T ss_pred eeEEEEEeCCHHHHHHHHHHHHHc----CCeEEccC-Ccccc------c-----------CCcceEEEECCCCCEEEEEE
Confidence 9999999998 78889999999 99988653 32110 0 01234677899999998886
Q ss_pred c
Q 013898 368 K 368 (434)
Q Consensus 368 ~ 368 (434)
+
T Consensus 117 ~ 117 (120)
T cd07254 117 T 117 (120)
T ss_pred e
Confidence 3
No 116
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=98.69 E-value=1.7e-07 Score=78.15 Aligned_cols=110 Identities=16% Similarity=0.183 Sum_probs=73.5
Q ss_pred eeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCC
Q 013898 211 HAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAG 290 (434)
Q Consensus 211 Hv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~G 290 (434)
||.+.|+|++++++||+++|||+.....+ . ...+..+ ...+.+..... .. . .+.+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~--~---------~~~~~~~--~~~l~~~~~~~---~~--------~-~~~~ 55 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS--K---------EAYFELA--GLWICLMEEDS---LQ--------G-PERT 55 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC--c---------eeEEEec--CeEEEeccCCC---cC--------C-CCCC
Confidence 89999999999999999999999865431 0 0111211 34555544321 01 1 2356
Q ss_pred ceEEEEEe--CCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEEcc
Q 013898 291 VQHLALVS--EDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTK 368 (434)
Q Consensus 291 vqHIAf~v--dDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqifT~ 368 (434)
++|+||.| +|+++.+++|+++ |+++...+ .. .. .....+|-+|++|+.+.|++-
T Consensus 56 ~~hiaf~v~~~d~~~~~~~l~~~----G~~~~~~~-~~--------~~-----------~~~~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 56 YTHIAFQIQSEEFDEYTERLKAL----GVEMKPER-PR--------VQ-----------GEGRSIYFYDPDGHLLELHAG 111 (113)
T ss_pred ccEEEEEcCHHHHHHHHHHHHHc----CCccCCCc-cc--------cC-----------CCceEEEEECCCCCEEEEEeC
Confidence 89999999 4799999999999 99887432 11 00 011355778999999999864
Q ss_pred c
Q 013898 369 P 369 (434)
Q Consensus 369 ~ 369 (434)
.
T Consensus 112 ~ 112 (113)
T cd08345 112 T 112 (113)
T ss_pred c
Confidence 3
No 117
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=98.68 E-value=3.2e-07 Score=78.66 Aligned_cols=84 Identities=15% Similarity=0.171 Sum_probs=61.2
Q ss_pred CcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC--EEEEEEcCCCCCCCcccccCCCCCCC
Q 013898 29 RVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD--LRFVFTAPYSPSISDAADAGNSSASL 106 (434)
Q Consensus 29 ~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~--i~~vl~~p~~~~~~~~~~~~~~~~~~ 106 (434)
.+.++.||++.|+|++++.+||+++|||++..+.+ ....++.++ ..+++...
T Consensus 3 ~~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~--------~~~~l~~~~~~~~i~l~~~------------------ 56 (124)
T cd08361 3 ELQDIAYVRLGTRDLAGATRFATDILGLQVAERTA--------KATYFRSDARDHTLVYIEG------------------ 56 (124)
T ss_pred eEEEeeEEEEeeCCHHHHHHHHHhccCceeccCCC--------CeEEEEcCCccEEEEEEeC------------------
Confidence 57899999999999999999999999999875421 123344432 33443321
Q ss_pred CCCChhHHhHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCCCCCC
Q 013898 107 PTFDHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPP 153 (434)
Q Consensus 107 ~~~~~~~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p 153 (434)
. ++..++||+|+| ++++++++.++|+++...+
T Consensus 57 --------------~-~~~~~iaf~v~~~~dv~~~~~~l~~~G~~~~~~~ 91 (124)
T cd08361 57 --------------D-PAEQASGFELRDDDALESAATELEQYGHEVRRGT 91 (124)
T ss_pred --------------C-CceEEEEEEECCHHHHHHHHHHHHHcCCceEEcC
Confidence 0 234679999986 9999999999999865443
No 118
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=98.68 E-value=6.4e-07 Score=74.17 Aligned_cols=86 Identities=19% Similarity=0.187 Sum_probs=62.4
Q ss_pred EEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChhHHhH
Q 013898 37 EFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACRS 116 (434)
Q Consensus 37 ~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (434)
.|.|+|++++++||++.|||+.....+ . .....++.|+..+.|....... .
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~----~~~~~~~~~~~~~~l~~~~~~~-------------------~---- 53 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--E----PGYAFLSRGGAQLMLSEHDGDE-------------------P---- 53 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--C----CcEEEEEeCCEEEEEeccCCCC-------------------C----
Confidence 689999999999999999999887643 1 1234556688888876532110 0
Q ss_pred HHHhcCCceeEEEEEecCHHHHHHHHHHcCCC-CCCCCc
Q 013898 117 FAASHGLAARSIAVEVEDADVAFNTSVAHGAK-PSSPPV 154 (434)
Q Consensus 117 ~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~-~~~~p~ 154 (434)
....+..+++|.|+|++++++++.++|++ +..++.
T Consensus 54 ---~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~ 89 (112)
T cd08349 54 ---VPLGRGGSVYIEVEDVDALYAELKAKGADLIVYPPE 89 (112)
T ss_pred ---CCCCCcEEEEEEeCCHHHHHHHHHHcCCcceecCcc
Confidence 02334458999999999999999999998 444544
No 119
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=98.68 E-value=5.7e-07 Score=80.36 Aligned_cols=94 Identities=14% Similarity=0.138 Sum_probs=62.8
Q ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCC-ceeEEEEEEEeCC--EEEEEEcCCCCCCCcccccCCCCCCC
Q 013898 30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTG-NTVHASYLLRSGD--LRFVFTAPYSPSISDAADAGNSSASL 106 (434)
Q Consensus 30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g-~~~~~~~~l~~G~--i~~vl~~p~~~~~~~~~~~~~~~~~~ 106 (434)
.++++||.|.|+|++++.+||++.|||++..+...+.. .......+++.++ ..+.+..
T Consensus 7 ~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~------------------- 67 (154)
T cd07237 7 DQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAE------------------- 67 (154)
T ss_pred CCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEc-------------------
Confidence 57899999999999999999999999998764321100 0011233344332 1122211
Q ss_pred CCCChhHHhHHHHhcCCceeEEEEEecCHH---HHHHHHHHcCCCCCCCCc
Q 013898 107 PTFDHAACRSFAASHGLAARSIAVEVEDAD---VAFNTSVAHGAKPSSPPV 154 (434)
Q Consensus 107 ~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd---~a~~ra~~~Ga~~~~~p~ 154 (434)
...+.++.||||+|+|.+ +++++++++|+++...|.
T Consensus 68 ------------~~~~~g~~Hiaf~V~d~~~l~~~~~~L~~~G~~v~~~~~ 106 (154)
T cd07237 68 ------------GPGPKRIHHLMLEVTSLDDVGRAYDRVRARGIPIAMTLG 106 (154)
T ss_pred ------------CCCCceeEEEEEEcCCHHHHHHHHHHHHHcCCceeccCC
Confidence 012357889999998754 689999999998766553
No 120
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=98.67 E-value=7.1e-07 Score=80.37 Aligned_cols=113 Identities=13% Similarity=0.099 Sum_probs=69.5
Q ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC-E-EEEEEcCCCCCCCcccccCCCCCCCCC
Q 013898 31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD-L-RFVFTAPYSPSISDAADAGNSSASLPT 108 (434)
Q Consensus 31 ~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~-i-~~vl~~p~~~~~~~~~~~~~~~~~~~~ 108 (434)
++|+||.|.|+|++++.+||+++|||++..+...+.+ .....+++.++ . .+.+.
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~--~~~~~~l~~~~~~~~i~l~---------------------- 57 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDG--TTWAAWLHRKGGVHDTALT---------------------- 57 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCC--cEEEEEEecCCCcceEEEe----------------------
Confidence 6899999999999999999999999998754321111 11122222221 1 11111
Q ss_pred CChhHHhHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCC-C-CCCcccc-CceEEEEEEecCCeEEEEee
Q 013898 109 FDHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKP-S-SPPVILD-NLAVIAEVQLYGDVVLRYVS 177 (434)
Q Consensus 109 ~~~~~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~-~-~~p~~~~-~~~~~~~i~~~Gg~~~~fvd 177 (434)
...+.++.|+||.|+| +++++++|+++|+.. + ..|.... ......-++.++|..++++.
T Consensus 58 ----------~~~~~~~~Hiaf~v~~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~ 122 (161)
T cd07256 58 ----------GGNGPRLHHVAFWVPEPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYT 122 (161)
T ss_pred ----------cCCCCceeEEEEEcCCHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEee
Confidence 1234578899999986 788889999999863 2 2232110 11223345566666776664
No 121
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.67 E-value=4.4e-07 Score=77.01 Aligned_cols=87 Identities=16% Similarity=0.212 Sum_probs=62.6
Q ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC--EEEEEEcCCCCCCCcccccCCCCCCCCC
Q 013898 31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD--LRFVFTAPYSPSISDAADAGNSSASLPT 108 (434)
Q Consensus 31 ~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~--i~~vl~~p~~~~~~~~~~~~~~~~~~~~ 108 (434)
++|+||.++|+|++++++||++.|||++....+ ..+.+..++ ..|.+.......
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~--------~~~~l~~~~~~~~l~l~~~~~~~---------------- 56 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERTD--------STAVLGTGGKRPLLVLEEDPDAP---------------- 56 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcCC--------CEEEEecCCCeEEEEEEeCCCCC----------------
Confidence 479999999999999999999999999986632 123445544 455554421100
Q ss_pred CChhHHhHHHHhcCCceeEEEEEec---CHHHHHHHHHHcCCCC
Q 013898 109 FDHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKP 149 (434)
Q Consensus 109 ~~~~~~~~~l~~hG~gv~~Iaf~V~---Dvd~a~~ra~~~Ga~~ 149 (434)
....+..++.|++|.|+ |++++++++.++|+++
T Consensus 57 --------~~~~~~~~~~hi~f~v~~~~~v~~~~~~l~~~g~~~ 92 (125)
T cd07255 57 --------PAPPGATGLYHFAILLPSRADLAAALRRLIELGIPL 92 (125)
T ss_pred --------cccCCCCcEEEEEEECCCHHHHHHHHHHHHHcCCce
Confidence 00123357889999997 4899999999999975
No 122
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=98.66 E-value=2.5e-07 Score=75.09 Aligned_cols=89 Identities=24% Similarity=0.272 Sum_probs=66.5
Q ss_pred eeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCC
Q 013898 211 HAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAG 290 (434)
Q Consensus 211 Hv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~G 290 (434)
|+++.|+|++++.+||+++|||+....... .......+.. +...|.|..+.. .... .++.+
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~-------~~~~~~~~~~--~~~~i~l~~~~~---~~~~-------~~~~~ 61 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN-------GGAEFAVLGL--GGTRLELFEGDE---PAPA-------PSGGG 61 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc-------CCEEEEEEec--CCceEEEecCCC---CCCc-------ccCCC
Confidence 899999999999999999999998766421 1122333333 257888877642 1111 24677
Q ss_pred ceEEEEEeCCHHHHHHHHHHhcCCCCceeccC
Q 013898 291 VQHLALVSEDIFRTLREMRKRSGVGGFEFMPS 322 (434)
Q Consensus 291 vqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~ 322 (434)
++|++|.|+|+.+..++|++. |+.+...
T Consensus 62 ~~~~~~~v~~~~~~~~~l~~~----g~~~~~~ 89 (112)
T cd06587 62 GVHLAFEVDDVDAAYERLKAA----GVEVLGE 89 (112)
T ss_pred eeEEEEECCCHHHHHHHHHHc----CCcccCC
Confidence 999999999999999999999 9988864
No 123
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=98.65 E-value=3.7e-07 Score=76.26 Aligned_cols=113 Identities=10% Similarity=0.015 Sum_probs=73.6
Q ss_pred eeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCC
Q 013898 209 LDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEG 288 (434)
Q Consensus 209 iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G 288 (434)
++|+++.|+|++++.+||+++|||+..+... +. ..+ ..+..+ +...+.+..... .. ...
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~-----~~~--~~~~~~-~~~~~~~~~~~~---~~---------~~~ 59 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GG-----GDY--AVFSTG-GGAVGGLMKAPE---PA---------AGS 59 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CC-----Cce--EEEEeC-CccEEEEecCCC---CC---------CCC
Confidence 4799999999999999999999999865431 00 001 122222 222333332211 00 123
Q ss_pred CCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEE
Q 013898 289 AGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIF 366 (434)
Q Consensus 289 ~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqif 366 (434)
.+..|++|.|+||+++.++|++. |++++.. |..+ .+ ....++-+|++|+.++++
T Consensus 60 ~~~~~~~f~v~di~~~~~~l~~~----g~~~~~~-~~~~-------~~------------~~~~~~~~DPdG~~~~l~ 113 (114)
T cd07247 60 PPGWLVYFAVDDVDAAAARVEAA----GGKVLVP-PTDI-------PG------------VGRFAVFADPEGAVFGLW 113 (114)
T ss_pred CCeEEEEEEeCCHHHHHHHHHHC----CCEEEeC-Cccc-------CC------------cEEEEEEECCCCCEEEeE
Confidence 45779999999999999999999 9998864 3331 00 012567788999988875
No 124
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=98.64 E-value=3.4e-07 Score=77.57 Aligned_cols=97 Identities=15% Similarity=0.154 Sum_probs=60.0
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChh
Q 013898 33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHA 112 (434)
Q Consensus 33 l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~ 112 (434)
++||.+.|+|.+++++||+ .|||+....... .....+...++..+.+........ . .+ .
T Consensus 1 ~~~i~l~V~D~~~a~~FY~-~LGf~~~~~~~~-----~~~~~~~~~~~~~l~l~~~~~~~~------------~--~~-~ 59 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYR-RLGFDFPEEADD-----EPHVEAVLPGGVRLAWDTVESIRS------------F--TP-G 59 (122)
T ss_pred CceEEEEeccHHHHHHHHH-HhCceecCCcCC-----CCcEEEEeCCCEEEEEEcccceee------------e--cC-C
Confidence 5899999999999999997 599987643220 011222223467777654211100 0 00 0
Q ss_pred HHhHHHHhcCCceeEEEEEec---CHHHHHHHHHHcCCCCCCCCcc
Q 013898 113 ACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPVI 155 (434)
Q Consensus 113 ~~~~~l~~hG~gv~~Iaf~V~---Dvd~a~~ra~~~Ga~~~~~p~~ 155 (434)
....+.+-.+++|.|. |+++++++++++|+++..+|..
T Consensus 60 -----~~~~~~~~~~l~~~~~~~~dvd~~~~~l~~~G~~~~~~~~~ 100 (122)
T cd07235 60 -----WTPTGGHRIALAFLCETPAEVDALYAELVGAGYPGHKEPWD 100 (122)
T ss_pred -----CCCCCCCcEEEEEEcCCHHHHHHHHHHHHHCCCCcCCCCcc
Confidence 0011223457788764 8999999999999987776654
No 125
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.64 E-value=2.7e-07 Score=77.74 Aligned_cols=120 Identities=18% Similarity=0.183 Sum_probs=75.9
Q ss_pred eeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCC
Q 013898 209 LDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEG 288 (434)
Q Consensus 209 iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G 288 (434)
|-|+.+.|+|++++++||+++|||+...... + ....+..+++ ..+.+..+.. .+.....+.....
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~~--~--------~~~~l~~~~~-~~~~l~~~~~----~~~~~~~~~~~~~ 65 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLKED--R--------RLAFFWVGGR-GMLLLFDPGA----TSTPGGEIPPHGG 65 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeecCC--C--------ceEEEEcCCC-cEEEEEecCC----cccccCCCCCCCC
Confidence 3589999999999999999999999875311 1 0122333333 3344433321 1000111222234
Q ss_pred CCceEEEEEe--CCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEE
Q 013898 289 AGVQHLALVS--EDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIF 366 (434)
Q Consensus 289 ~GvqHIAf~v--dDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqif 366 (434)
.|++|+||.+ +|++++++++.++ |+++...+ ... .+ ..-++-.|++|.+++++
T Consensus 66 ~~~~~~~~~v~~~dl~~~~~~l~~~----g~~~~~~~-~~~-------~~-------------~~~~~~~DP~G~~ie~~ 120 (122)
T cd08354 66 SGPGHFAFAIPAEELAEWEAHLEAK----GVAIESEV-QWP-------RG-------------GRSLYFRDPDGNLLELA 120 (122)
T ss_pred CCccEEEEEcCHHHHHHHHHHHHhc----CCceeccc-cCC-------CC-------------eeEEEEECCCCCEEEEe
Confidence 6799999999 5899999999999 99877532 210 01 11246788999999998
Q ss_pred cc
Q 013898 367 TK 368 (434)
Q Consensus 367 T~ 368 (434)
|+
T Consensus 121 ~~ 122 (122)
T cd08354 121 TP 122 (122)
T ss_pred cC
Confidence 74
No 126
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.63 E-value=1.3e-06 Score=75.84 Aligned_cols=112 Identities=14% Similarity=0.195 Sum_probs=71.8
Q ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCc---------eeEEEEEEE----eCCEEEEEEcCCCCCCCcccc
Q 013898 32 RFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGN---------TVHASYLLR----SGDLRFVFTAPYSPSISDAAD 98 (434)
Q Consensus 32 ~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~---------~~~~~~~l~----~G~i~~vl~~p~~~~~~~~~~ 98 (434)
++.|+.+.|+|++++++||+++|||+++.+...++++ .......+. .++..++|+......
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~------ 75 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIG------ 75 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCC------
Confidence 6899999999999999999999999988765444321 011111121 123344454311100
Q ss_pred cCCCCCCCCCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEee
Q 013898 99 AGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS 177 (434)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd 177 (434)
.+ ..|.+ +++|.|++. ++.++++++|+++...|.. +..|++++|..++|+|
T Consensus 76 ---------~~----------~~g~~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~~------~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 76 ---------DY----------ELGND--FLGITIHSK-QAVSNAKKHNWPVTEVEDG------VYEVKAPGGYKFYLID 126 (127)
T ss_pred ---------CC----------CCCCC--EEEEEEECH-HHHHHHHHCCCceecCCCC------EEEEECCCCCEEEEec
Confidence 00 12334 577777776 5669999999987654431 6778888888888876
No 127
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.61 E-value=1.1e-06 Score=74.56 Aligned_cols=90 Identities=17% Similarity=0.241 Sum_probs=61.8
Q ss_pred EEEEEEEeCCHHHHHHHHHHh---cCCcEEEEecCCCCceeEEEEEEEe--CCEEEEEEcCCCCCCCcccccCCCCCCCC
Q 013898 33 FHHVEFWCTDATNTARRFSWG---LGMPIVAKSDLSTGNTVHASYLLRS--GDLRFVFTAPYSPSISDAADAGNSSASLP 107 (434)
Q Consensus 33 l~HI~~~V~da~~a~~fy~~~---lGf~~v~~~~~~~g~~~~~~~~l~~--G~i~~vl~~p~~~~~~~~~~~~~~~~~~~ 107 (434)
++||.+.|+|++++++||+++ |||+.+.+.. . ....+.. ++..+.+..+....
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~--~-----~~~~~~~~~~~~~~~l~~~~~~~--------------- 58 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMEDG--P-----GAVGYGKGGGGPDFWVTKPFDGE--------------- 58 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeecC--C-----ceeEeccCCCCceEEEeccccCC---------------
Confidence 589999999999999999998 6999876531 1 1122333 35666665432100
Q ss_pred CCChhHHhHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCCCCCCcc
Q 013898 108 TFDHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVI 155 (434)
Q Consensus 108 ~~~~~~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p~~ 155 (434)
. ..+.+..||||.|+| +++++++++++|+.+..+|..
T Consensus 59 ----------~-~~~~~~~hi~f~v~~~~~v~~~~~~~~~~g~~~~~~~~~ 98 (123)
T cd07262 59 ----------P-ATAGNGTHVAFAAPSREAVDAFHAAALAAGGTDEGAPGL 98 (123)
T ss_pred ----------C-CCCCCceEEEEECCCHHHHHHHHHHHHHcCCccCCCCCC
Confidence 0 011234599999987 788999999999987766644
No 128
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=98.61 E-value=4.1e-07 Score=89.57 Aligned_cols=108 Identities=16% Similarity=0.156 Sum_probs=74.2
Q ss_pred eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcC-C-CceEEEecccCCCCCCCchHHHHH
Q 013898 206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANN-D-EMVLLPMNEPVFGTKRKSQIQTYL 283 (434)
Q Consensus 206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~-~-g~v~i~L~e~~~g~~~~s~i~~fl 283 (434)
+++|+|+++.|+|++++.+||+++|||+...... + ...+... . ....+.+...
T Consensus 2 i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~--~---------~~~~~~~~~~~~~~l~l~~~-------------- 56 (294)
T TIGR02295 2 ILRTGHVELRVTDLDKSREFYVDLLGFRETESDK--E---------YIYLRGIEEFQHHSLVLTKA-------------- 56 (294)
T ss_pred CceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC--C---------eEEEeccCcCCceEEEeeeC--------------
Confidence 6789999999999999999999999999764321 0 1112211 1 1222333211
Q ss_pred hhcCCCCceEEEEEeC---CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCc
Q 013898 284 EHNEGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQG 360 (434)
Q Consensus 284 ~~~~G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g 360 (434)
.+.|++|+||.|+ |++++.++|+++ |+++...+ .... ...+|-+|++|
T Consensus 57 ---~~~~~~hiaf~v~~~~dl~~~~~~l~~~----Gv~v~~~~-~~~~---------------------~~~~~~~DPdG 107 (294)
T TIGR02295 57 ---PSAALSYIGFRVSKEEDLDKAADFFQKL----GHPVRLVR-DGGQ---------------------PEALRVEDPFG 107 (294)
T ss_pred ---CCcCccEEEEEeCCHHHHHHHHHHHHhc----CCcEEeec-CCCC---------------------ceEEEEECCCC
Confidence 2457999999997 789999999999 99887543 2110 13457778888
Q ss_pred eEEEEEc
Q 013898 361 TLLQIFT 367 (434)
Q Consensus 361 ~llqifT 367 (434)
..++++.
T Consensus 108 ~~iEl~~ 114 (294)
T TIGR02295 108 YPIEFYF 114 (294)
T ss_pred CEEEEEE
Confidence 8888776
No 129
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=98.61 E-value=1.2e-06 Score=77.49 Aligned_cols=109 Identities=17% Similarity=0.130 Sum_probs=72.0
Q ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC--EEEEEEcCCCCCCCcccccCCCCCCCCC
Q 013898 31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD--LRFVFTAPYSPSISDAADAGNSSASLPT 108 (434)
Q Consensus 31 ~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~--i~~vl~~p~~~~~~~~~~~~~~~~~~~~ 108 (434)
.+++||.|.|+|++++.+||++.|||++....+ .....++.++ ..+.+..
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~-------~~~~~l~~~~~~~~~~l~~--------------------- 54 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG-------DQMAFLRCNSDHHSIAIAR--------------------- 54 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC-------CeEEEEECCCCcceEEEcc---------------------
Confidence 479999999999999999999999999875422 0123344332 2233221
Q ss_pred CChhHHhHHHHhcCCceeEEEEEecCHHHHH---HHHHHcCCCCCCCCccc-cCceEEEEEEecCCeEEEEeec
Q 013898 109 FDHAACRSFAASHGLAARSIAVEVEDADVAF---NTSVAHGAKPSSPPVIL-DNLAVIAEVQLYGDVVLRYVSY 178 (434)
Q Consensus 109 ~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~---~ra~~~Ga~~~~~p~~~-~~~~~~~~i~~~Gg~~~~fvd~ 178 (434)
....++.|+||.|+|++++. +++.++|+++...|... .+......++.+.|..++|+..
T Consensus 55 -----------~~~~~~~hiaf~v~d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~ 117 (144)
T cd07239 55 -----------GPHPSLNHVAFEMPSIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSE 117 (144)
T ss_pred -----------CCCCceEEEEEECCCHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccC
Confidence 11246779999999977775 89999999876554321 1112233456677777777663
No 130
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=98.60 E-value=9.2e-07 Score=74.77 Aligned_cols=84 Identities=25% Similarity=0.194 Sum_probs=59.5
Q ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe-C--C-EEEEEEcCCCCCCCcccccCCCCCC
Q 013898 30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS-G--D-LRFVFTAPYSPSISDAADAGNSSAS 105 (434)
Q Consensus 30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~-G--~-i~~vl~~p~~~~~~~~~~~~~~~~~ 105 (434)
+++++||.|.|+|.+++.+||++.|||++....+ ....++. + . ..+.+..
T Consensus 2 ~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~------------------ 55 (121)
T cd07266 2 ILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD--------DRIYLRGLEEFIHHSLVLTK------------------ 55 (121)
T ss_pred cceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC--------CeEEEEecCCCceEEEEEee------------------
Confidence 6789999999999999999999999999875422 1122221 1 1 1222211
Q ss_pred CCCCChhHHhHHHHhcCCceeEEEEEe---cCHHHHHHHHHHcCCCCCCCC
Q 013898 106 LPTFDHAACRSFAASHGLAARSIAVEV---EDADVAFNTSVAHGAKPSSPP 153 (434)
Q Consensus 106 ~~~~~~~~~~~~l~~hG~gv~~Iaf~V---~Dvd~a~~ra~~~Ga~~~~~p 153 (434)
....++.+++|.| +|+++++++++++|+++...|
T Consensus 56 --------------~~~~~~~hi~~~v~~~~dv~~~~~~l~~~g~~~~~~~ 92 (121)
T cd07266 56 --------------APVAGLGHIAFRVRSEEDLDKAEAFFQELGLPTEWVE 92 (121)
T ss_pred --------------CCCCceeEEEEECCCHHHHHHHHHHHHHcCCCccccc
Confidence 0113678999999 478999999999999875543
No 131
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=98.59 E-value=6.6e-07 Score=74.68 Aligned_cols=107 Identities=19% Similarity=0.242 Sum_probs=70.4
Q ss_pred eeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEc-CCCceEEEecccCCCCCCCchHHHHHhhcCCCC
Q 013898 212 AVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLAN-NDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAG 290 (434)
Q Consensus 212 v~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~-~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~G 290 (434)
..+.|+|++++.+||+++|||+..... + . ...+.. +.+...+.+..... .+.+
T Consensus 4 ~~l~v~Dl~~s~~FY~~~lG~~~~~~~-----~-----~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~ 57 (112)
T cd07238 4 PNLPVADPEAAAAFYADVLGLDVVMDH-----G-----W-IATFASPQNMTVQVSLATEGG---------------TATV 57 (112)
T ss_pred ceEecCCHHHHHHHHHHhcCceEEEcC-----C-----c-eEEEeecCCCCcEEEEecCCC---------------CCCC
Confidence 357789999999999999999975321 0 0 111222 22245555543310 1234
Q ss_pred ceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEEcc
Q 013898 291 VQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTK 368 (434)
Q Consensus 291 vqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqifT~ 368 (434)
..||+|.|+|+++++++|+++ |+++...| .. .. + .....+-.|++|..+.++|.
T Consensus 58 ~~~i~~~v~d~~~~~~~l~~~----G~~~~~~~-~~--------~~-------~----g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 58 VPDLSIEVDDVDAALARAVAA----GFAIVYGP-TD--------EP-------W----GVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred CCEEEEEeCCHHHHHHHHHhc----CCeEecCC-cc--------CC-------C----ceEEEEEECCCCCEEEEEEc
Confidence 679999999999999999999 99988643 22 00 0 11244667888988888864
No 132
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.59 E-value=6.6e-07 Score=75.38 Aligned_cols=93 Identities=16% Similarity=0.150 Sum_probs=61.3
Q ss_pred EEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC-EEEEEEcCCCCCCCcccccCCCCCCCCCCChh
Q 013898 34 HHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD-LRFVFTAPYSPSISDAADAGNSSASLPTFDHA 112 (434)
Q Consensus 34 ~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~-i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~ 112 (434)
-||.|.|+|++++++||++.|||++..+.. + ....++.++ ..+.+..+..... .
T Consensus 2 ~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~~---~----~~~~l~~~~~~~~~l~~~~~~~~--------~---------- 56 (122)
T cd08354 2 LETALYVDDLEAAEAFYEDVLGLELMLKED---R----RLAFFWVGGRGMLLLFDPGATST--------P---------- 56 (122)
T ss_pred eEEEEEeCCHHHHHHHHHhccCCEEeecCC---C----ceEEEEcCCCcEEEEEecCCccc--------c----------
Confidence 589999999999999999999999886421 1 123344444 4444444221100 0
Q ss_pred HHhHHHHhc-CCceeEEEEEe--cCHHHHHHHHHHcCCCCCCCC
Q 013898 113 ACRSFAASH-GLAARSIAVEV--EDADVAFNTSVAHGAKPSSPP 153 (434)
Q Consensus 113 ~~~~~l~~h-G~gv~~Iaf~V--~Dvd~a~~ra~~~Ga~~~~~p 153 (434)
......+ ..++.+++|+| +|++++++++.++|+++...+
T Consensus 57 --~~~~~~~~~~~~~~~~~~v~~~dl~~~~~~l~~~g~~~~~~~ 98 (122)
T cd08354 57 --GGEIPPHGGSGPGHFAFAIPAEELAEWEAHLEAKGVAIESEV 98 (122)
T ss_pred --cCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHhcCCceeccc
Confidence 0001112 24778999998 589999999999999865544
No 133
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=98.59 E-value=1.3e-06 Score=74.01 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=56.2
Q ss_pred EEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChhHHh
Q 013898 36 VEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACR 115 (434)
Q Consensus 36 I~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (434)
..|.|+|++++++||++ |||+...+.. . ....++.|+..+.|.......
T Consensus 6 ~~l~v~Dl~~s~~FY~~-lG~~~~~~~~--~-----~~~~~~~~~~~l~l~~~~~~~----------------------- 54 (120)
T cd08350 6 PNLPSRDLDATEAFYAR-LGFSVGYRQA--A-----GYMILRRGDLELHFFAHPDLD----------------------- 54 (120)
T ss_pred ceeEcCCHHHHHHHHHH-cCCEEEecCC--C-----CEEEEEcCCEEEEEEecCcCC-----------------------
Confidence 57899999999999999 9999876532 1 234456787777775421000
Q ss_pred HHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCC
Q 013898 116 SFAASHGLAARSIAVEVEDADVAFNTSVAHGAKP 149 (434)
Q Consensus 116 ~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~ 149 (434)
......+++|.|+|+++++++++++|++.
T Consensus 55 -----~~~~~~~~~~~v~dvd~~~~~l~~~G~~~ 83 (120)
T cd08350 55 -----PATSPFGCCLRLPDVAALHAEFRAAGLPE 83 (120)
T ss_pred -----CCCCcceEEEEeCCHHHHHHHHHHhCccc
Confidence 01122468999999999999999999974
No 134
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=98.58 E-value=6.4e-07 Score=73.86 Aligned_cols=84 Identities=19% Similarity=0.118 Sum_probs=56.7
Q ss_pred EEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCE----EEEEEcCCCCCCCcccccCCCCCCCCCCChhH
Q 013898 38 FWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDL----RFVFTAPYSPSISDAADAGNSSASLPTFDHAA 113 (434)
Q Consensus 38 ~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i----~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (434)
|+|+|++++++||++.|||+++...+ + ...+..|.. ...+......
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~---------------------- 50 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP--D------YVDFSLGFRFHDGVIEFLQFPDP---------------------- 50 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET--S------EEEEEETEEEEEEEEEEEEEESS----------------------
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC--C------eEEEEeccchhhhhHHHccCCcc----------------------
Confidence 68999999999999999999998543 1 111222211 1111111000
Q ss_pred HhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccc
Q 013898 114 CRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVIL 156 (434)
Q Consensus 114 ~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~ 156 (434)
...+.+..+++|+|+|+++++++++++|++++.+|...
T Consensus 51 -----~~~~~~~~~~~~~v~dv~~~~~~l~~~G~~~~~~~~~~ 88 (108)
T PF12681_consen 51 -----PGPPGGGFHLCFEVEDVDALYERLKELGAEIVTEPRDD 88 (108)
T ss_dssp -----SSSSSSEEEEEEEESHHHHHHHHHHHTTSEEEEEEEEE
T ss_pred -----ccCCCceeEEEEEEcCHHHHHHHHHHCCCeEeeCCEEc
Confidence 01234667999999999999999999999887766553
No 135
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=98.58 E-value=9e-07 Score=75.22 Aligned_cols=83 Identities=16% Similarity=0.088 Sum_probs=59.3
Q ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC--EEEEEEcCCCCCCCcccccCCCCCCCCCC
Q 013898 32 RFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD--LRFVFTAPYSPSISDAADAGNSSASLPTF 109 (434)
Q Consensus 32 ~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~--i~~vl~~p~~~~~~~~~~~~~~~~~~~~~ 109 (434)
++.||.|.|+|++++++||++.|||+++.+.. . ....++.++ ..+.+...
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~--~-----~~~~~~~~~~~~~~~l~~~--------------------- 53 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRPE--D-----GALYLRMDDRAWRIAVHPG--------------------- 53 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCCC--C-----CeEEEEccCCceEEEEEeC---------------------
Confidence 68999999999999999999999998765421 1 123344433 34444321
Q ss_pred ChhHHhHHHHhcCCceeEEEEEec---CHHHHHHHHHHcCCCCCCCC
Q 013898 110 DHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPP 153 (434)
Q Consensus 110 ~~~~~~~~l~~hG~gv~~Iaf~V~---Dvd~a~~ra~~~Ga~~~~~p 153 (434)
...+..++||.|+ |+++++++++++|+++...|
T Consensus 54 -----------~~~~~~~~~f~v~~~~dl~~~~~~l~~~Gv~~~~~~ 89 (120)
T cd07252 54 -----------EADDLAYAGWEVADEAALDALAARLRAAGVAVEEGS 89 (120)
T ss_pred -----------CCCceeEEEEEECCHHHHHHHHHHHHHcCCeEEEcC
Confidence 0135568999997 48999999999999876544
No 136
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=98.57 E-value=1.4e-06 Score=73.59 Aligned_cols=108 Identities=18% Similarity=0.103 Sum_probs=69.4
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChhHH
Q 013898 35 HVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAAC 114 (434)
Q Consensus 35 HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (434)
||.+.|+|++++.+||++.|||+...+.+ . ........+.+.+.+..+..
T Consensus 4 hv~l~v~d~~~a~~FY~~~lG~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~------------------------ 53 (120)
T cd07254 4 HVALNVDDLEASIAFYSKLFGVEPTKVRD--D----YAKFLLEDPRLNFVLNERPG------------------------ 53 (120)
T ss_pred EEEEEeCCHHHHHHHHHHHhCCeEecccC--C----eeEEEecCCceEEEEecCCC------------------------
Confidence 89999999999999999999998765532 1 11222233445554443110
Q ss_pred hHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCCCCCCccccC--ceEEEEEEecCCeEEEEee
Q 013898 115 RSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVILDN--LAVIAEVQLYGDVVLRYVS 177 (434)
Q Consensus 115 ~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p~~~~~--~~~~~~i~~~Gg~~~~fvd 177 (434)
....++.+++|+|+| ++++++++.++|+++...|....+ ......++.++|..++|+.
T Consensus 54 -----~~~~~~~h~~f~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 116 (120)
T cd07254 54 -----APGGGLNHLGVQVDSAEEVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFV 116 (120)
T ss_pred -----CCCCCeeEEEEEeCCHHHHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEE
Confidence 001467799999988 788999999999987665432211 1123445566666666654
No 137
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.57 E-value=1.6e-06 Score=73.91 Aligned_cols=100 Identities=13% Similarity=0.145 Sum_probs=61.6
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChh
Q 013898 33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHA 112 (434)
Q Consensus 33 l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~ 112 (434)
+.+|+|.|+|++++++||+. |||+.......+. ...+...++..+.|........ +...
T Consensus 1 ~~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~-----~~~~~~~~~~~l~l~~~~~~~~---------------~~~~ 59 (124)
T cd09012 1 MIFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEK-----AACMVISDNIFVMLLTEDFFQT---------------FTPK 59 (124)
T ss_pred CEEEEeecCCHHHHHHHHHH-CCCEEccccCCCC-----eEEEEECCceEEEEEcHHHHhh---------------ccCC
Confidence 36899999999999999975 9999765322111 1222223456666654211000 0000
Q ss_pred HHhHHHHhcCCceeEEEEEec---CHHHHHHHHHHcCCCCCCCCccc
Q 013898 113 ACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPVIL 156 (434)
Q Consensus 113 ~~~~~l~~hG~gv~~Iaf~V~---Dvd~a~~ra~~~Ga~~~~~p~~~ 156 (434)
.. ....+.+..+++|.|+ |+++++++++++|++++.+|...
T Consensus 60 ~~---~~~~~~~~~~l~f~v~~~~~vd~~~~~l~~~G~~i~~~p~~~ 103 (124)
T cd09012 60 PI---ADTKKSTEVLISLSADSREEVDELVEKALAAGGKEFREPQDH 103 (124)
T ss_pred Cc---ccCCCCCeEEEEEeCCCHHHHHHHHHHHHHCCCcccCCcccC
Confidence 00 0011234568999998 58899999999999988776543
No 138
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.57 E-value=8.4e-07 Score=75.17 Aligned_cols=122 Identities=12% Similarity=0.149 Sum_probs=71.7
Q ss_pred eeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHH--hhc
Q 013898 209 LDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYL--EHN 286 (434)
Q Consensus 209 iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl--~~~ 286 (434)
+.|+.+.|.|++++.+||+++|||+...... +. +. ..+.. +...+.+..... ........+. ...
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~-----~~--~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 67 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHE--SG-----DY--GELET--GETTLAFASHDL--AESNLKGGFVKADPA 67 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CC-----cE--EEecC--CcEEEEEEcccc--cccccccCccCCccc
Confidence 3599999999999999999999999764321 10 01 11111 223333332110 0000000100 000
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEE
Q 013898 287 EGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIF 366 (434)
Q Consensus 287 ~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqif 366 (434)
..++.-|++|.|+|+++++++++++ |++++.. |... + + .....+-.|++|+++.+.
T Consensus 68 ~~~~~~~~~~~v~di~~~~~~l~~~----G~~~~~~-~~~~--------~-------~----g~~~~~~~DPdG~~~~~~ 123 (125)
T cd07264 68 QPPAGFEIAFVTDDVAAAFARAVEA----GAVLVSE-PKEK--------P-------W----GQTVAYVRDINGFLIELC 123 (125)
T ss_pred cCCCcEEEEEEcCCHHHHHHHHHHc----CCEeccC-CccC--------C-------C----CcEEEEEECCCCCEEEEe
Confidence 1233459999999999999999999 9998864 3320 0 0 012335578889999886
Q ss_pred c
Q 013898 367 T 367 (434)
Q Consensus 367 T 367 (434)
+
T Consensus 124 ~ 124 (125)
T cd07264 124 S 124 (125)
T ss_pred c
Confidence 5
No 139
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.55 E-value=1.1e-06 Score=74.54 Aligned_cols=116 Identities=16% Similarity=0.119 Sum_probs=72.1
Q ss_pred eeeeeEecCCHHHHHHHHHHh---hCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhh
Q 013898 209 LDHAVGNVPELAPAVAYVKSF---TGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH 285 (434)
Q Consensus 209 iDHv~i~V~dl~~~~~fY~~v---LGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~ 285 (434)
|+|+++.|+|++++++||+++ |||+...... .. ...+..+.+...+.|..+.. ... .
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~---~~-------~~~~~~~~~~~~~~l~~~~~---~~~-------~ 60 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMEDG---PG-------AVGYGKGGGGPDFWVTKPFD---GEP-------A 60 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeecC---Cc-------eeEeccCCCCceEEEecccc---CCC-------C
Confidence 689999999999999999999 6888764320 00 11222332345666654321 100 1
Q ss_pred cCCCCceEEEEEeCC---HHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceE
Q 013898 286 NEGAGVQHLALVSED---IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL 362 (434)
Q Consensus 286 ~~G~GvqHIAf~vdD---I~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~l 362 (434)
...+..||||.|+| +++..++++++ |+.+...| ... .. .+ ...-.+|-+|++|+.
T Consensus 61 -~~~~~~hi~f~v~~~~~v~~~~~~~~~~----g~~~~~~~-~~~---~~--~~-----------~~~~~~~~~DPdG~~ 118 (123)
T cd07262 61 -TAGNGTHVAFAAPSREAVDAFHAAALAA----GGTDEGAP-GLR---PH--YG-----------PGYYAAYVRDPDGNK 118 (123)
T ss_pred -CCCCceEEEEECCCHHHHHHHHHHHHHc----CCccCCCC-CCC---CC--CC-----------CCeEEEEEECCCCCE
Confidence 12345799999997 67788888888 99887653 210 00 00 011135778899998
Q ss_pred EEEE
Q 013898 363 LQIF 366 (434)
Q Consensus 363 lqif 366 (434)
+.++
T Consensus 119 ie~~ 122 (123)
T cd07262 119 IEAV 122 (123)
T ss_pred EEEe
Confidence 8876
No 140
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=98.55 E-value=3.3e-06 Score=72.81 Aligned_cols=113 Identities=18% Similarity=0.165 Sum_probs=70.1
Q ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeC---CEEEEEEcCCCCCCCcccccCCCCCCCCC
Q 013898 32 RFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG---DLRFVFTAPYSPSISDAADAGNSSASLPT 108 (434)
Q Consensus 32 ~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G---~i~~vl~~p~~~~~~~~~~~~~~~~~~~~ 108 (434)
+|+||.+.|+|++++++||++.|||++....+. .....++.+ ...+.+.......
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~------~~~~~~~~~~~~~~~l~l~~~~~~~---------------- 58 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL------GGLVFLSRDPDEHHQIALITGRPAA---------------- 58 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC------CcEEEEEecCCCceEEEEEecCCCC----------------
Confidence 589999999999999999999999998765321 122333333 3456655421110
Q ss_pred CChhHHhHHHHhcCCceeEEEEEecCHH---HHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEee
Q 013898 109 FDHAACRSFAASHGLAARSIAVEVEDAD---VAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS 177 (434)
Q Consensus 109 ~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd---~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd 177 (434)
. ...+.++.|++|.|+|++ ++++++.+.|+++...+.. +......++++.|..+.+..
T Consensus 59 ------~---~~~~~~~~h~~f~v~~~~~v~~~~~~l~~~G~~~~~~~~~--~~~~~~~~~DP~G~~ie~~~ 119 (134)
T cd08348 59 ------P---PPGPAGLNHIAFEVDSLDDLRDLYERLRAAGITPVWPVDH--GNAWSIYFRDPDGNRLELFV 119 (134)
T ss_pred ------C---CCCCCCceEEEEEeCCHHHHHHHHHHHHHCCCCccccCCC--CceeEEEEECCCCCEEEEEE
Confidence 0 012347789999999865 5889999999986654321 11122233444444555543
No 141
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=98.55 E-value=1.6e-06 Score=85.83 Aligned_cols=117 Identities=12% Similarity=0.071 Sum_probs=71.9
Q ss_pred CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC-EEEEEEcCCCCCCCcccccCCCCCCC
Q 013898 28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD-LRFVFTAPYSPSISDAADAGNSSASL 106 (434)
Q Consensus 28 ~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~-i~~vl~~p~~~~~~~~~~~~~~~~~~ 106 (434)
+.+++++||.+.|+|++++.+||+++|||++..+...+.+... ....+..++ ...
T Consensus 141 ~~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----------------------- 196 (303)
T TIGR03211 141 VGARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQ-AAAWLSVSNKAHD----------------------- 196 (303)
T ss_pred cCceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEE-EEEEEEcCCCCcc-----------------------
Confidence 4578999999999999999999999999998765322222110 111222111 000
Q ss_pred CCCChhHHhHHHHhcCCc-eeEEEEEecC---HHHHHHHHHHcCCCCCCCCcccc-CceEEEEEEecCCeEEEEe
Q 013898 107 PTFDHAACRSFAASHGLA-ARSIAVEVED---ADVAFNTSVAHGAKPSSPPVILD-NLAVIAEVQLYGDVVLRYV 176 (434)
Q Consensus 107 ~~~~~~~~~~~l~~hG~g-v~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p~~~~-~~~~~~~i~~~Gg~~~~fv 176 (434)
+ .+....+.| +.||||+|+| ++++++++.++|+++..+|.... +.....-++.++|..+++.
T Consensus 197 -------~-~~~~~~~~g~~~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~ 263 (303)
T TIGR03211 197 -------I-AFVGDPEPGKLHHVSFFLDSWEDVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETF 263 (303)
T ss_pred -------c-ceecCCCCCceEEEEEEcCCHHHHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEe
Confidence 0 011122345 8899999996 56688899999998766664321 1112333456666666665
No 142
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=98.54 E-value=1.3e-06 Score=74.07 Aligned_cols=118 Identities=21% Similarity=0.238 Sum_probs=72.3
Q ss_pred eEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCCce
Q 013898 213 VGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQ 292 (434)
Q Consensus 213 ~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~Gvq 292 (434)
.+.|.|++++++||+++|||+.......++ + .+....+..+++ .+.+..... ...... ....+.+-.
T Consensus 4 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~-~----~~~~~~l~~~~~--~~~l~~~~~---~~~~~~---~~~~~~~~~ 70 (122)
T cd08355 4 TLRYRDAAAAIDWLTDAFGFEERLVVPDDD-G----GVAHAELRFGDG--GVMVGSVRD---DYRASS---ARAGGAGTQ 70 (122)
T ss_pred EEEECCHHHHHHHHHHhcCCEEEEEEeCCC-C----cEEEEEEEECCE--EEEEecCCC---cccccc---cccCCCceE
Confidence 467889999999999999999876542111 1 122222333333 333332211 111100 112345678
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEEc
Q 013898 293 HLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFT 367 (434)
Q Consensus 293 HIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqifT 367 (434)
|++|.|+|++++.++++++ |++++.. |..- -. .....+-+|++|+++++.+
T Consensus 71 ~~~~~v~d~d~~~~~l~~~----G~~v~~~-~~~~------~~-------------g~~~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 71 GVYVVVDDVDAHYERARAA----GAEILRE-PTDT------PY-------------GSREFTARDPEGNLWTFGT 121 (122)
T ss_pred EEEEEECCHHHHHHHHHHC----CCEEeeC-cccc------CC-------------CcEEEEEECCCCCEEEEec
Confidence 9999999999999999999 9998853 3220 00 1123456788899998864
No 143
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=98.49 E-value=5.9e-07 Score=76.01 Aligned_cols=120 Identities=18% Similarity=0.178 Sum_probs=69.3
Q ss_pred eeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCC
Q 013898 211 HAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAG 290 (434)
Q Consensus 211 Hv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~G 290 (434)
||++.|+|++++++||+++|||+...... . . ..+...+..+.+.+..... ...... .......+
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~-----~--~~~~~~~~~~~l~~~~~~~---~~~~~~--~~~~~~~~ 65 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE----T-----W--VDFDFFGHQLVAHLSPNFN---ADASDN--AVDGHPVP 65 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC----C-----c--ccccccCcEEEEEeccCCC---cccccC--CCCCCccC
Confidence 99999999999999999999999854311 0 0 0011112223333322110 000000 00112235
Q ss_pred ceEEEE--EeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEE
Q 013898 291 VQHLAL--VSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIF 366 (434)
Q Consensus 291 vqHIAf--~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqif 366 (434)
..|+|| .++|+++++++|+++ |++++..| ...+..- . -....++-+|++|+++++=
T Consensus 66 ~~h~~~~~~~~dv~~~~~~l~~~----g~~~~~~p-~~~~~~~---~------------~~~~~~~~~DPdG~~iE~~ 123 (125)
T cd08357 66 VPHFGLILSEEEFDALAERLEAA----GVEFLIEP-YTRFEGQ---P------------GEQETFFLKDPSGNALEFK 123 (125)
T ss_pred CceEEEEEeHHHHHHHHHHHHHC----CCcEecCc-ceeccCC---c------------CceeEEEEECCCCCEEEEe
Confidence 789865 668999999999999 99998643 3210000 0 0123457789999988764
No 144
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.49 E-value=2.3e-06 Score=72.15 Aligned_cols=101 Identities=17% Similarity=0.159 Sum_probs=65.9
Q ss_pred EEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChhHHhH
Q 013898 37 EFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACRS 116 (434)
Q Consensus 37 ~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (434)
.+.|+|++++++||++ |||++....+ ....++.|+..+.|.......
T Consensus 6 ~l~v~Dl~~s~~FY~~-LGf~~~~~~~--------~~~~l~~~~~~l~l~~~~~~~------------------------ 52 (113)
T cd08356 6 FIPAKDFAESKQFYQA-LGFELEWEND--------NLAYFRLGNCAFYLQDYYVKD------------------------ 52 (113)
T ss_pred ccccccHHHHHHHHHH-hCCeeEecCC--------CEEEEEcCCEEEEeecCCCcc------------------------
Confidence 4678999999999987 9999986632 234556788888775422110
Q ss_pred HHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeeccCc
Q 013898 117 FAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDK 181 (434)
Q Consensus 117 ~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~~~~ 181 (434)
. .+-.+++|.|+|+++++++++++|++...++... . +.-..+|...+++.|| +|
T Consensus 53 ----~-~~~~~~~~~v~did~~~~~l~~~G~~~~~~~~~~-~----~~~~~~g~r~f~~~DP-dG 106 (113)
T cd08356 53 ----W-AENSMLHLEVDDLEAYYEHIKALGLPKKFPGVKL-P----PITQPWWGREFFLHDP-SG 106 (113)
T ss_pred ----c-ccCCEEEEEECCHHHHHHHHHHcCCcccccceec-C----ccccCCCcEEEEEECC-Cc
Confidence 0 1113689999999999999999998743221100 0 0012467667777774 44
No 145
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=98.48 E-value=2.5e-06 Score=71.12 Aligned_cols=104 Identities=15% Similarity=0.075 Sum_probs=65.1
Q ss_pred EEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeC---CEEEEEEcCCCCCCCcccccCCCCCCCCCCChh
Q 013898 36 VEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG---DLRFVFTAPYSPSISDAADAGNSSASLPTFDHA 112 (434)
Q Consensus 36 I~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G---~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~ 112 (434)
-.+.|+|++++.+||++.|||++....+ ....++.+ ...+.+.....
T Consensus 4 ~~l~v~Dl~~s~~FY~~~lG~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~---------------------- 53 (112)
T cd07238 4 PNLPVADPEAAAAFYADVLGLDVVMDHG--------WIATFASPQNMTVQVSLATEGG---------------------- 53 (112)
T ss_pred ceEecCCHHHHHHHHHHhcCceEEEcCC--------ceEEEeecCCCCcEEEEecCCC----------------------
Confidence 3578999999999999999999864311 12223332 34444432100
Q ss_pred HHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEee
Q 013898 113 ACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS 177 (434)
Q Consensus 113 ~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd 177 (434)
.+....+++|.|+|++++++++++.|+++..+|.......+...+.++.|..+.++.
T Consensus 54 --------~~~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~i~~~~ 110 (112)
T cd07238 54 --------TATVVPDLSIEVDDVDAALARAVAAGFAIVYGPTDEPWGVRRFFVRDPFGKLVNILT 110 (112)
T ss_pred --------CCCCCCEEEEEeCCHHHHHHHHHhcCCeEecCCccCCCceEEEEEECCCCCEEEEEE
Confidence 012234799999999999999999999987766443222233344455554554443
No 146
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=98.46 E-value=2e-06 Score=75.83 Aligned_cols=106 Identities=12% Similarity=0.099 Sum_probs=65.7
Q ss_pred EEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeC-CE-EEEEEcCCCCCCCcccccCCCCCCCCCCCh
Q 013898 34 HHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG-DL-RFVFTAPYSPSISDAADAGNSSASLPTFDH 111 (434)
Q Consensus 34 ~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G-~i-~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~ 111 (434)
.||.+.|+|++++.+||++.|||+++.+.+ .....++.+ +. ...+..
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~-------~~~~~l~~~~~~~~h~~~~------------------------ 49 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIE-------DRIVFMRCHPNPFHHTFAV------------------------ 49 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeC-------CEEEEEEcCCCCCcceeee------------------------
Confidence 499999999999999999999999886632 112333322 11 111100
Q ss_pred hHHhHHHHhcCCceeEEEEEecCH---HHHHHHHHHcCCCCCCCCcccc-CceEEEEEEecCCeEEEEe
Q 013898 112 AACRSFAASHGLAARSIAVEVEDA---DVAFNTSVAHGAKPSSPPVILD-NLAVIAEVQLYGDVVLRYV 176 (434)
Q Consensus 112 ~~~~~~l~~hG~gv~~Iaf~V~Dv---d~a~~ra~~~Ga~~~~~p~~~~-~~~~~~~i~~~Gg~~~~fv 176 (434)
......++.||||.|+|. +++++++.++|+++...|.... ......-++.+.|..++|.
T Consensus 50 ------~~~~~~gl~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~ 112 (141)
T cd07258 50 ------GPASSSHFHHVNFMVTDIDDIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYS 112 (141)
T ss_pred ------ccCCCCceEEEEEECCCHHHHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEE
Confidence 001235899999999864 6789999999998766654321 1122223444555555544
No 147
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=98.44 E-value=5.4e-06 Score=69.67 Aligned_cols=116 Identities=19% Similarity=0.088 Sum_probs=73.4
Q ss_pred eEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCCce
Q 013898 213 VGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQ 292 (434)
Q Consensus 213 ~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~Gvq 292 (434)
.+.|.|++++++||+++|||+.......++. .+.-..+... ...+.+..+.. ... .... .+.+..
T Consensus 6 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~-----~~~~~~l~~~--~~~~~l~~~~~---~~~----~~~~-~~~~~~ 70 (122)
T cd07246 6 YLIVRDAAAAIDFYKKAFGAEELERMPDDDG-----RVMHAELRIG--DSVLMLADEFP---EHG----SPAS-WGGTPV 70 (122)
T ss_pred EEEECCHHHHHHHHHHhhCCEEEEEEeCCCC-----CEEEEEEEEC--CEEEEEecCCc---ccC----CCCC-CCCceE
Confidence 3678899999999999999998766431111 0111122222 23566655431 110 1111 345678
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEEc
Q 013898 293 HLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFT 367 (434)
Q Consensus 293 HIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqifT 367 (434)
|++|.|+|++++++++.++ |++++.. |..+. . .....+-+|++|+++++.+
T Consensus 71 ~~~~~v~d~~~~~~~l~~~----G~~~~~~-~~~~~------~-------------g~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 71 SLHLYVEDVDATFARAVAA----GATSVMP-PADQF------W-------------GDRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred EEEEEeCCHHHHHHHHHHC----CCeEecC-ccccc------c-------------cceEEEEECCCCCEEEEec
Confidence 9999999999999999999 9998864 34321 0 1123456788899988754
No 148
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.44 E-value=1e-06 Score=74.59 Aligned_cols=116 Identities=12% Similarity=0.100 Sum_probs=70.6
Q ss_pred eeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcC
Q 013898 208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNE 287 (434)
Q Consensus 208 ~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~ 287 (434)
++.|+.+.|.|++++++||+++|||+...... . . ... . +.+.+.+............ ...
T Consensus 2 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~---~------~--~~~-~--~~~~l~~~~~~~~~~~~~~------~~~ 61 (120)
T cd09011 2 KFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG---E------N--VTF-E--GGFALQEGYSWLEGISKAD------IIE 61 (120)
T ss_pred EEEEEEEEECCHHHHHHHHHHhcCCEEeeccC---c------e--EEE-e--ccceeccchhhhccCCccc------ccc
Confidence 57899999999999999999999999764321 0 0 111 1 1122221110000000000 112
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHhcCCCCc-eeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEE
Q 013898 288 GAGVQHLALVSEDIFRTLREMRKRSGVGGF-EFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIF 366 (434)
Q Consensus 288 G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv-~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqif 366 (434)
+.+-.|++|.|+||++++++|+++ |+ +++..| ... + + ....++-+|++|+++.|.
T Consensus 62 ~~~~~~l~~~v~dvd~~~~~l~~~----g~~~~~~~~-~~~--------~-------~----g~r~~~~~DPdGn~iei~ 117 (120)
T cd09011 62 KSNNFELYFEEEDFDAFLDKLKRY----DNIEYVHPI-KEH--------P-------W----GQRVVRFYDPDKHIIEVG 117 (120)
T ss_pred cCCceEEEEEehhhHHHHHHHHhc----CCcEEecCc-ccC--------C-------C----ccEEEEEECCCCCEEEEe
Confidence 344679999999999999999998 75 677543 220 0 0 112456788999998876
Q ss_pred c
Q 013898 367 T 367 (434)
Q Consensus 367 T 367 (434)
+
T Consensus 118 ~ 118 (120)
T cd09011 118 E 118 (120)
T ss_pred c
Confidence 5
No 149
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=98.44 E-value=4.6e-06 Score=69.87 Aligned_cols=82 Identities=15% Similarity=0.148 Sum_probs=54.7
Q ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeC--CEEEEEEcCCCCCCCcccccCCCCCCCCC
Q 013898 31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG--DLRFVFTAPYSPSISDAADAGNSSASLPT 108 (434)
Q Consensus 31 ~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G--~i~~vl~~p~~~~~~~~~~~~~~~~~~~~ 108 (434)
.+|+||+|.|+|++++.+||. .|||++..+.+ ...++..+ ...+.+...
T Consensus 1 ~~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-------------------- 51 (112)
T cd08344 1 HSIDHFALEVPDLEVARRFYE-AFGLDVREEGD--------GLELRTAGNDHRWARLLEG-------------------- 51 (112)
T ss_pred CceeEEEEecCCHHHHHHHHH-HhCCcEEeecC--------ceEEEecCCCceEEEeecC--------------------
Confidence 369999999999999999997 69999875421 12222222 222333211
Q ss_pred CChhHHhHHHHhcCCcee--EEEEEecCHHHHHHHHHHcCCCCCCCC
Q 013898 109 FDHAACRSFAASHGLAAR--SIAVEVEDADVAFNTSVAHGAKPSSPP 153 (434)
Q Consensus 109 ~~~~~~~~~l~~hG~gv~--~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p 153 (434)
.+.++. ++++.++|++++++++.++|+++..+|
T Consensus 52 ------------~~~~~~~~~~~~~~~d~~~~~~~l~~~Gi~~~~~~ 86 (112)
T cd08344 52 ------------ARKRLAYLSFGIFEDDFAAFARHLEAAGVALAAAP 86 (112)
T ss_pred ------------CCCceeeEEEEeEhhhHHHHHHHHHHcCCceecCC
Confidence 011223 455567899999999999999876554
No 150
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=98.42 E-value=5.3e-07 Score=87.30 Aligned_cols=106 Identities=22% Similarity=0.170 Sum_probs=83.1
Q ss_pred cceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHH
Q 013898 204 YGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYL 283 (434)
Q Consensus 204 ~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl 283 (434)
..+.+++||.+.|++...+..||+..|||++..+-+.+ +......|.++++ |.+.+.++++.. ...+....++
T Consensus 13 g~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~le---tg~~~~~s~alr~--g~~vFv~~s~~~--p~~~~~G~~l 85 (381)
T KOG0638|consen 13 GKFLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLE---TGSREWASHALRQ--GKIVFVFNSAYN--PDNSEYGDHL 85 (381)
T ss_pred cceeeeeEEEEEecCcHHHHHHHHhhcCCcchhccccc---ccchHHHHHHhhc--CCEEEEEecCCC--CCchhhhhhh
Confidence 46899999999999999999999999999988654321 2222244555554 568888888763 3455666677
Q ss_pred hhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceecc
Q 013898 284 EHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMP 321 (434)
Q Consensus 284 ~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~ 321 (434)
.+ +|.||-.|||.|+|.+++++.++++ |..++.
T Consensus 86 ~~-HgdgvkdvafeVeD~da~~~~~va~----Ga~v~~ 118 (381)
T KOG0638|consen 86 VK-HGDGVKDVAFEVEDADAIFQEAVAN----GAKVVR 118 (381)
T ss_pred hh-cccchhceEEEecchHHHHHHHHHc----CCcccC
Confidence 77 4888999999999999999999999 988885
No 151
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=98.41 E-value=1.9e-06 Score=72.84 Aligned_cols=94 Identities=17% Similarity=0.041 Sum_probs=55.6
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChhHH
Q 013898 35 HVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAAC 114 (434)
Q Consensus 35 HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (434)
||+|.|+|++++++||+++|||++..... . ...+..++..+.+........ . ... ..
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~------~~~~~~~~~~~~l~~~~~~~~---~------~~~-----~~- 58 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE--T------WVDFDFFGHQLVAHLSPNFNA---D------ASD-----NA- 58 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC--C------cccccccCcEEEEEeccCCCc---c------ccc-----CC-
Confidence 99999999999999999999999865421 1 112232333333322111000 0 000 00
Q ss_pred hHHHHhcCCceeE--EEEEecCHHHHHHHHHHcCCCCCCCCc
Q 013898 115 RSFAASHGLAARS--IAVEVEDADVAFNTSVAHGAKPSSPPV 154 (434)
Q Consensus 115 ~~~l~~hG~gv~~--Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~ 154 (434)
......+..| ++|.++|+++++++++++|+++..+|.
T Consensus 59 ---~~~~~~~~~h~~~~~~~~dv~~~~~~l~~~g~~~~~~p~ 97 (125)
T cd08357 59 ---VDGHPVPVPHFGLILSEEEFDALAERLEAAGVEFLIEPY 97 (125)
T ss_pred ---CCCCccCCceEEEEEeHHHHHHHHHHHHHCCCcEecCcc
Confidence 0001112334 456788999999999999999876664
No 152
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=98.41 E-value=2e-06 Score=72.75 Aligned_cols=116 Identities=20% Similarity=0.190 Sum_probs=70.6
Q ss_pred eeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHh--hc
Q 013898 209 LDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLE--HN 286 (434)
Q Consensus 209 iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~--~~ 286 (434)
||||++.|.|++++++||+ .|||+...... .. .. ..+..+ +.++|.|..... . +.+.. ..
T Consensus 1 ~~~i~l~V~D~~~a~~FY~-~LGf~~~~~~~--~~------~~-~~~~~~-~~~~l~l~~~~~---~----~~~~~~~~~ 62 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYR-RLGFDFPEEAD--DE------PH-VEAVLP-GGVRLAWDTVES---I----RSFTPGWTP 62 (122)
T ss_pred CceEEEEeccHHHHHHHHH-HhCceecCCcC--CC------Cc-EEEEeC-CCEEEEEEcccc---e----eeecCCCCC
Confidence 6899999999999999996 59999754321 00 00 112222 235555533210 0 00000 01
Q ss_pred CCCCceEEEEEeC---CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEE
Q 013898 287 EGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLL 363 (434)
Q Consensus 287 ~G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~ll 363 (434)
.+.+-.|++|.++ ||++++++|+++ |+++... |.... .+ ....+-+|++|.++
T Consensus 63 ~~~~~~~l~~~~~~~~dvd~~~~~l~~~----G~~~~~~-~~~~~------~g-------------~~~~~~~DPdG~~i 118 (122)
T cd07235 63 TGGHRIALAFLCETPAEVDALYAELVGA----GYPGHKE-PWDAP------WG-------------QRYAIVKDPDGNLV 118 (122)
T ss_pred CCCCcEEEEEEcCCHHHHHHHHHHHHHC----CCCcCCC-CccCC------CC-------------CEEEEEECCCCCEE
Confidence 2345678888875 899999999999 9988754 33210 01 12345688899999
Q ss_pred EEE
Q 013898 364 QIF 366 (434)
Q Consensus 364 qif 366 (434)
.+|
T Consensus 119 el~ 121 (122)
T cd07235 119 DLF 121 (122)
T ss_pred EEe
Confidence 887
No 153
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.31 E-value=7e-06 Score=69.89 Aligned_cols=115 Identities=14% Similarity=0.149 Sum_probs=71.3
Q ss_pred eeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhh----
Q 013898 210 DHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH---- 285 (434)
Q Consensus 210 DHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~---- 285 (434)
.++++.|.|++++++||++ |||+....+. ... . ..... + +...+.|.... ..+.+...
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~--~~~-----~-~~~~~-~-~~~~l~l~~~~-------~~~~~~~~~~~~ 63 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTA-LGFEFNPQFS--DEK-----A-ACMVI-S-DNIFVMLLTED-------FFQTFTPKPIAD 63 (124)
T ss_pred EEEEeecCCHHHHHHHHHH-CCCEEccccC--CCC-----e-EEEEE-C-CceEEEEEcHH-------HHhhccCCCccc
Confidence 4789999999999999976 9999764332 110 1 11112 2 23555554421 01111110
Q ss_pred cCCCCceEEEEEeC---CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceE
Q 013898 286 NEGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL 362 (434)
Q Consensus 286 ~~G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~l 362 (434)
..+.+..|+||.|+ |++++.++++++ |++++.. |..+ + .....|-+|++|++
T Consensus 64 ~~~~~~~~l~f~v~~~~~vd~~~~~l~~~----G~~i~~~-p~~~--------~------------~~~~~~~~DPdG~~ 118 (124)
T cd09012 64 TKKSTEVLISLSADSREEVDELVEKALAA----GGKEFRE-PQDH--------G------------FMYGRSFADLDGHL 118 (124)
T ss_pred CCCCCeEEEEEeCCCHHHHHHHHHHHHHC----CCcccCC-cccC--------C------------ceEEEEEECCCCCE
Confidence 12344679999998 588899999999 9999864 3321 0 00124778999999
Q ss_pred EEEEc
Q 013898 363 LQIFT 367 (434)
Q Consensus 363 lqifT 367 (434)
+.++.
T Consensus 119 ie~~~ 123 (124)
T cd09012 119 WEVLW 123 (124)
T ss_pred EEEEE
Confidence 98874
No 154
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.25 E-value=1.7e-05 Score=66.16 Aligned_cols=90 Identities=18% Similarity=0.183 Sum_probs=60.1
Q ss_pred EEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChhHHh
Q 013898 36 VEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACR 115 (434)
Q Consensus 36 I~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (434)
|.|.|+|++++++||++.|||++....+ ....+...++..+.+.......
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~----------------------- 51 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELSP-------TFALFVLGSGVKLGLWSRHTVE----------------------- 51 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCCC-------ceEEEEeCCCcEEEEeeccccC-----------------------
Confidence 6789999999999999999999775421 1122222355666665421110
Q ss_pred HHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCCCCCCccc
Q 013898 116 SFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVIL 156 (434)
Q Consensus 116 ~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p~~~ 156 (434)
... ....+..+++|.|+| ++++++++.++|+++..+|...
T Consensus 52 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~v~~~~~~~ 94 (114)
T cd07261 52 PAS-DATGGGSELAFMVDDGAAVDALYAEWQAKGVKIIQEPTEM 94 (114)
T ss_pred CCC-CCCCCceEEEEEcCCHHHHHHHHHHHHHCCCeEecCcccc
Confidence 000 011355789999986 8899999999999987766543
No 155
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.24 E-value=1.8e-05 Score=66.09 Aligned_cols=110 Identities=15% Similarity=0.215 Sum_probs=70.3
Q ss_pred eeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCCc
Q 013898 212 AVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGV 291 (434)
Q Consensus 212 v~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~Gv 291 (434)
+.+.|.|++++++||+++|||+...... . . ..+..+ +...+.+..... ... ......|.
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~~----~-----~--~~~~~~-~~~~~~l~~~~~---~~~------~~~~~~~~ 60 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELSP----T-----F--ALFVLG-SGVKLGLWSRHT---VEP------ASDATGGG 60 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCCC----c-----e--EEEEeC-CCcEEEEeeccc---cCC------CCCCCCCc
Confidence 5688999999999999999999764311 0 1 112222 234555544321 010 00123568
Q ss_pred eEEEEEeCC---HHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEEc
Q 013898 292 QHLALVSED---IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFT 367 (434)
Q Consensus 292 qHIAf~vdD---I~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqifT 367 (434)
+|++|.++| ++++++++++. |+++... |... + + . ..++-+|++|..+.+||
T Consensus 61 ~~~~~~v~~~~~~~~~~~~~~~~----g~~v~~~-~~~~--------~-------~----g-~~~~~~DPdGn~ie~~~ 114 (114)
T cd07261 61 SELAFMVDDGAAVDALYAEWQAK----GVKIIQE-PTEM--------D-------F----G-YTFVALDPDGHRLRVFA 114 (114)
T ss_pred eEEEEEcCCHHHHHHHHHHHHHC----CCeEecC-cccc--------C-------C----c-cEEEEECCCCCEEEeeC
Confidence 999999986 88889999998 9998853 3220 1 1 1 13467889999999986
No 156
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.23 E-value=7.8e-06 Score=68.90 Aligned_cols=102 Identities=18% Similarity=0.101 Sum_probs=64.0
Q ss_pred EecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCCceE
Q 013898 214 GNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQH 293 (434)
Q Consensus 214 i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~GvqH 293 (434)
+.|.|++++++||++ |||+..+..+ . . ..+.. +...+.|..... .. ..+-.|
T Consensus 7 l~v~Dl~~s~~FY~~-LGf~~~~~~~--~-------~--~~l~~--~~~~l~l~~~~~---~~-----------~~~~~~ 58 (113)
T cd08356 7 IPAKDFAESKQFYQA-LGFELEWEND--N-------L--AYFRL--GNCAFYLQDYYV---KD-----------WAENSM 58 (113)
T ss_pred cccccHHHHHHHHHH-hCCeeEecCC--C-------E--EEEEc--CCEEEEeecCCC---cc-----------cccCCE
Confidence 556799999999987 9999876421 1 1 22333 334454433210 11 122348
Q ss_pred EEEEeCCHHHHHHHHHHhcCCCCceeccC----CCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEE
Q 013898 294 LALVSEDIFRTLREMRKRSGVGGFEFMPS----PPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIF 366 (434)
Q Consensus 294 IAf~vdDI~~av~~L~~~~~~~Gv~fl~~----pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqif 366 (434)
++|.|+||++++++|+++ |+++... +|.. .-.....++-+|++|+++.+.
T Consensus 59 ~~~~v~did~~~~~l~~~----G~~~~~~~~~~~~~~-------------------~~~g~r~f~~~DPdGn~~~~~ 112 (113)
T cd08356 59 LHLEVDDLEAYYEHIKAL----GLPKKFPGVKLPPIT-------------------QPWWGREFFLHDPSGVLWHIG 112 (113)
T ss_pred EEEEECCHHHHHHHHHHc----CCcccccceecCccc-------------------cCCCcEEEEEECCCccEEEee
Confidence 999999999999999999 9876431 1111 001223567788999998864
No 157
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.16 E-value=1.9e-05 Score=66.11 Aligned_cols=107 Identities=18% Similarity=0.243 Sum_probs=65.1
Q ss_pred EEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChhHHh
Q 013898 36 VEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACR 115 (434)
Q Consensus 36 I~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (434)
|.|.|+|++++.+||++.|||++..+.. . ....++.++..+.+........ .... .
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~~--~-----~~~~~~~~~~~~~l~~~~~~~~---------~~~~--------~ 57 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADSN--D-----GVAFFQLGGLVLALFPREELAK---------DAGV--------P 57 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccCC--C-----ceEEEEcCCeEEEEecchhhhh---------hcCC--------C
Confidence 7899999999999999999999876511 1 2344555776666654211000 0000 0
Q ss_pred HHHHhcCCceeEEEEEe---cCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898 116 SFAASHGLAARSIAVEV---EDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY 178 (434)
Q Consensus 116 ~~l~~hG~gv~~Iaf~V---~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~ 178 (434)
. ...+.+-.+++|.+ +|++++++++.+.|+++..+|... ++|+...++.|+
T Consensus 58 ~--~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~----------~~g~~~~~~~DP 111 (121)
T cd07251 58 V--PPPGFSGITLAHNVRSEEEVDAVLARAAAAGATIVKPPQDV----------FWGGYSGYFADP 111 (121)
T ss_pred C--CCCCccceEEEEEcCCHHHHHHHHHHHHhCCCEEecCCccC----------CCCceEEEEECC
Confidence 0 00111223466554 689999999999999876665432 245556666663
No 158
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=98.13 E-value=1.8e-05 Score=65.08 Aligned_cols=108 Identities=17% Similarity=0.162 Sum_probs=64.7
Q ss_pred EecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCCceE
Q 013898 214 GNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQH 293 (434)
Q Consensus 214 i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~GvqH 293 (434)
|.|+|++++++||+++|||+...... .. ..+.. ......+...+.-..+. .....+..|
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~--~~----~~~~~-~~~~~~~~~~~~~~~~~--------------~~~~~~~~~ 59 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP--DY----VDFSL-GFRFHDGVIEFLQFPDP--------------PGPPGGGFH 59 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET--SE----EEEEE-TEEEEEEEEEEEEEESS--------------SSSSSSEEE
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC--Ce----EEEEe-ccchhhhhHHHccCCcc--------------ccCCCceeE
Confidence 57899999999999999999887422 10 00100 00000011111111111 113467899
Q ss_pred EEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEE
Q 013898 294 LALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIF 366 (434)
Q Consensus 294 IAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqif 366 (434)
++|.|+|++++.++++++ |++++..| ..... .....+-.|++|++++++
T Consensus 60 ~~~~v~dv~~~~~~l~~~----G~~~~~~~-~~~~~-------------------g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 60 LCFEVEDVDALYERLKEL----GAEIVTEP-RDDPW-------------------GQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp EEEEESHHHHHHHHHHHT----TSEEEEEE-EEETT-------------------SEEEEEEE-TTS-EEEEE
T ss_pred EEEEEcCHHHHHHHHHHC----CCeEeeCC-EEcCC-------------------CeEEEEEECCCCCEEEeC
Confidence 999999999999999999 99988643 44100 112445677888888764
No 159
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=98.12 E-value=4.2e-05 Score=63.13 Aligned_cols=81 Identities=16% Similarity=0.141 Sum_probs=56.5
Q ss_pred eEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCCce
Q 013898 213 VGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQ 292 (434)
Q Consensus 213 ~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~Gvq 292 (434)
.+.|+|++++++||+++|||+...... +. . ..++.. +...+.|.+... .... ...+..
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~------~-~~~~~~--~~~~~~l~~~~~---~~~~--------~~~~~~ 60 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--EP------G-YAFLSR--GGAQLMLSEHDG---DEPV--------PLGRGG 60 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--CC------c-EEEEEe--CCEEEEEeccCC---CCCC--------CCCCcE
Confidence 478999999999999999999876532 00 1 122332 346677765431 1100 235566
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCCCcee
Q 013898 293 HLALVSEDIFRTLREMRKRSGVGGFEF 319 (434)
Q Consensus 293 HIAf~vdDI~~av~~L~~~~~~~Gv~f 319 (434)
|++|.++|++++.+++++. |+.+
T Consensus 61 ~~~~~~~~~~~~~~~l~~~----G~~~ 83 (112)
T cd08349 61 SVYIEVEDVDALYAELKAK----GADL 83 (112)
T ss_pred EEEEEeCCHHHHHHHHHHc----CCcc
Confidence 9999999999999999999 9883
No 160
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.08 E-value=7.3e-06 Score=72.01 Aligned_cols=98 Identities=15% Similarity=0.205 Sum_probs=73.9
Q ss_pred ccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHH
Q 013898 203 DYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTY 282 (434)
Q Consensus 203 ~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~f 282 (434)
+.++.++|||-+.+++-++...|+ +.|||+...+-.. ..+.+++ .|.|+|.||.. +.|.+.+|
T Consensus 4 P~g~~G~dFvEFa~~~~~~l~~~~-~~lGF~~~a~hrs---------k~v~l~r--QG~I~~vln~e-----p~s~a~~~ 66 (139)
T PF14696_consen 4 PLGLDGFDFVEFAVPDAQALAQLF-TALGFQPVARHRS---------KDVTLYR--QGDINFVLNSE-----PDSFAAEF 66 (139)
T ss_dssp TT-EEEEEEEEEE-SSTTSCHHHH-CCCCEEEECCECC---------CSEEEEE--ETTEEEEEEEE-----STSCHHHH
T ss_pred CCCCCCeEEEEEecCCHHHHHHHH-HHhCcceEEecCC---------cceEEEE--eCCEEEEEeCC-----CcchHHHH
Confidence 468999999999999977777777 6799998765321 1122333 36799999985 46789999
Q ss_pred HhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccC
Q 013898 283 LEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPS 322 (434)
Q Consensus 283 l~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~ 322 (434)
...| |+||--|||+|+|..+++++..++ |.+.+..
T Consensus 67 ~~~H-G~sv~aiafrV~Da~~A~~rA~~~----GA~~~~~ 101 (139)
T PF14696_consen 67 AAQH-GPSVCAIAFRVDDAAAAYERAVAL----GAEPVQE 101 (139)
T ss_dssp HHHH-SSEEEEEEEEES-HHHHHHHHHHT----T--EEEE
T ss_pred HHhc-CCEEEEEEEEeCCHHHHHHHHHHc----CCcCccc
Confidence 9884 999999999999999999999999 9887754
No 161
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=98.08 E-value=3.6e-05 Score=65.12 Aligned_cols=79 Identities=15% Similarity=0.056 Sum_probs=52.3
Q ss_pred eeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCCc
Q 013898 212 AVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGV 291 (434)
Q Consensus 212 v~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~Gv 291 (434)
..+.|.|++++++||++ |||+..+... + +. ..+.. +...+.|..... .. ....-
T Consensus 6 ~~l~v~Dl~~s~~FY~~-lG~~~~~~~~--~------~~--~~~~~--~~~~l~l~~~~~---~~----------~~~~~ 59 (120)
T cd08350 6 PNLPSRDLDATEAFYAR-LGFSVGYRQA--A------GY--MILRR--GDLELHFFAHPD---LD----------PATSP 59 (120)
T ss_pred ceeEcCCHHHHHHHHHH-cCCEEEecCC--C------CE--EEEEc--CCEEEEEEecCc---CC----------CCCCc
Confidence 46778899999999999 9999875431 0 11 12232 234555543210 00 11223
Q ss_pred eEEEEEeCCHHHHHHHHHHhcCCCCceec
Q 013898 292 QHLALVSEDIFRTLREMRKRSGVGGFEFM 320 (434)
Q Consensus 292 qHIAf~vdDI~~av~~L~~~~~~~Gv~fl 320 (434)
-|++|.|+||++.+++|+++ |+.+.
T Consensus 60 ~~~~~~v~dvd~~~~~l~~~----G~~~~ 84 (120)
T cd08350 60 FGCCLRLPDVAALHAEFRAA----GLPET 84 (120)
T ss_pred ceEEEEeCCHHHHHHHHHHh----Ccccc
Confidence 58999999999999999999 98754
No 162
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.03 E-value=1.3e-05 Score=67.14 Aligned_cols=116 Identities=15% Similarity=0.080 Sum_probs=67.6
Q ss_pred eeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCCc
Q 013898 212 AVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGV 291 (434)
Q Consensus 212 v~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~Gv 291 (434)
|.+.|+|++++.+||+++|||++.... .. ...++.. +...+.+..... ...... ......+.+-
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~---~~-------~~~~~~~--~~~~~~l~~~~~---~~~~~~-~~~~~~~~~~ 65 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADS---ND-------GVAFFQL--GGLVLALFPREE---LAKDAG-VPVPPPGFSG 65 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccC---CC-------ceEEEEc--CCeEEEEecchh---hhhhcC-CCCCCCCccc
Confidence 678999999999999999999976541 11 0122333 235555543210 000000 0000112233
Q ss_pred eEEEE---EeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEEc
Q 013898 292 QHLAL---VSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFT 367 (434)
Q Consensus 292 qHIAf---~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqifT 367 (434)
.|++| .++|++++++++++. |++++.. |...+. .....+-+|++|+++++++
T Consensus 66 ~~~~~~~~~~~d~~~~~~~l~~~----G~~~~~~-~~~~~~-------------------g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 66 ITLAHNVRSEEEVDAVLARAAAA----GATIVKP-PQDVFW-------------------GGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred eEEEEEcCCHHHHHHHHHHHHhC----CCEEecC-CccCCC-------------------CceEEEEECCCCCEEEEee
Confidence 34555 457899999999999 9998853 332110 0123466888999999986
No 163
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=97.91 E-value=2.1e-05 Score=71.79 Aligned_cols=98 Identities=21% Similarity=0.231 Sum_probs=52.6
Q ss_pred eeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHH---hh
Q 013898 209 LDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYL---EH 285 (434)
Q Consensus 209 iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl---~~ 285 (434)
|||+.+.|+|+++++++|++.|||++......... |.....+..+++ .|+|...... .......++. ..
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~-----GT~N~li~f~~~--YlEli~i~~~-~~~~~~~~~~~~~~~ 72 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGW-----GTANALIPFGDG--YLELIAIDPE-APAPDRGRWFGLDRL 72 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT------EEEEEEE-SSS--EEEEEEES-H-HHSTGGGT-TTTHHH
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCC-----ccEEEEEeeCCc--eEEEEEeCCc-ccccccccceechhh
Confidence 79999999999999999999999998865432211 234444444554 6666554211 0111111111 11
Q ss_pred cCCCCceEEEEEeCCHHHHHHHHHHhcCCCCce
Q 013898 286 NEGAGVQHLALVSEDIFRTLREMRKRSGVGGFE 318 (434)
Q Consensus 286 ~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~ 318 (434)
..+.|+.++||.|+|+.++.++|+++ |++
T Consensus 73 ~~~~g~~~~~l~t~d~~~~~~~l~~~----G~~ 101 (175)
T PF13468_consen 73 AGGEGLYGWALRTDDIEAVAARLRAA----GLD 101 (175)
T ss_dssp HT--EEEEEEEE-S-HHHHHHHHHTT----T-E
T ss_pred cCCCCeEEEEEecCCHHHHHHHHHhc----CCC
Confidence 25899999999999999999999999 976
No 164
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=97.83 E-value=0.00011 Score=64.81 Aligned_cols=103 Identities=13% Similarity=0.141 Sum_probs=62.3
Q ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCC
Q 013898 30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTF 109 (434)
Q Consensus 30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~ 109 (434)
+.++.|+.+.+++..+.+.||...||++...... ...+... ..+-.....++|+-+...+.
T Consensus 40 ytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP--~~~~~~~-v~~~~~~~~~ELthn~Gtes---------------- 100 (170)
T KOG2944|consen 40 YTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVP--KPEHGVS-VFVFSRNAKLELTHNWGTES---------------- 100 (170)
T ss_pred hhhhccceeechhhhhHhhhHHHhhcccccccCc--cCCCCCc-eEEecccCceeeecCCCCCC----------------
Confidence 4566667777777777777777777775332211 1111112 33333555666666544331
Q ss_pred ChhHH-hHHHH-hcCC-ceeEEEEEecCHHHHHHHHHHcCCCCCCCCc
Q 013898 110 DHAAC-RSFAA-SHGL-AARSIAVEVEDADVAFNTSVAHGAKPSSPPV 154 (434)
Q Consensus 110 ~~~~~-~~~l~-~hG~-gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~ 154 (434)
.. +.|+. .|-+ |..||||.|+|+++++++++++|++....|.
T Consensus 101 ---~~~~~~~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~~ 145 (170)
T KOG2944|consen 101 ---PPDQAYLNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKLK 145 (170)
T ss_pred ---CcchhhcCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecCC
Confidence 11 23332 2334 8999999999999999999999999544453
No 165
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=97.81 E-value=0.00056 Score=58.88 Aligned_cols=105 Identities=14% Similarity=0.095 Sum_probs=68.7
Q ss_pred EEEe-CCHHHHHHHHHHhcCCcEEEEecCCC--------CceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCC
Q 013898 37 EFWC-TDATNTARRFSWGLGMPIVAKSDLST--------GNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLP 107 (434)
Q Consensus 37 ~~~V-~da~~a~~fy~~~lGf~~v~~~~~~~--------g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~ 107 (434)
-|++ .|+++|++||+++||+++......+. .........++.++..|++.+.....
T Consensus 4 ~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~~l~~~d~~~~~--------------- 68 (128)
T cd06588 4 YLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQRLMASDGGPGF--------------- 68 (128)
T ss_pred EEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCEEEEEEcCCCCC---------------
Confidence 4667 99999999999999999887653111 11123456677788888887632110
Q ss_pred CCChhHHhHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898 108 TFDHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY 178 (434)
Q Consensus 108 ~~~~~~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~ 178 (434)
. . . +.+...+++.|+| ++++++++.+.| +++.+|... +||+..-.+.|+
T Consensus 69 ----~-~-----~-~~~~~~l~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~----------~~g~~~~~v~Dp 120 (128)
T cd06588 69 ----P-F-----T-FGNGISLSVECDSEEEADRLFEALSEGG-TVLMPLQKT----------FWSPLFGWVTDR 120 (128)
T ss_pred ----C-C-----C-CCCCEEEEEECCCHHHHHHHHHHHhcCC-eEeccchhc----------CcccccEEEECC
Confidence 0 0 1 1223478999886 778888876655 666666443 467767777774
No 166
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.76 E-value=0.00051 Score=60.20 Aligned_cols=107 Identities=18% Similarity=0.190 Sum_probs=74.1
Q ss_pred EEEeC-CHHHHHHHHHHhcCCcEEEEecCCCC--------ceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCC
Q 013898 37 EFWCT-DATNTARRFSWGLGMPIVAKSDLSTG--------NTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLP 107 (434)
Q Consensus 37 ~~~V~-da~~a~~fy~~~lGf~~v~~~~~~~g--------~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~ 107 (434)
-|.+. |+++|++||+++||++...+....+. ........++.|+..|+++.......
T Consensus 5 Yl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g~~im~sd~~~~~~-------------- 70 (136)
T COG2764 5 YLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGGSTIMLSDAFPDMG-------------- 70 (136)
T ss_pred EEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECCEEEEEecCCCccC--------------
Confidence 35667 99999999999999998876542220 01234456677888888876432110
Q ss_pred CCChhHHhHHHHhcCC-ceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898 108 TFDHAACRSFAASHGL-AARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY 178 (434)
Q Consensus 108 ~~~~~~~~~~l~~hG~-gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~ 178 (434)
...+. .-..|-+.++|+++++++|.+.|++++.++... .||+..-.++|+
T Consensus 71 -----------~~~~~~~s~~l~~~~~d~da~f~~a~~aGa~v~mpl~~~----------fwG~r~G~v~D~ 121 (136)
T COG2764 71 -----------ATEGGGTSLSLDLYVEDVDAVFERAAAAGATVVMPLEDT----------FWGDRYGQVTDP 121 (136)
T ss_pred -----------cccCCCeeEEEEEEehHHHHHHHHHHhcCCeEEecchhc----------CcccceEEEECC
Confidence 01222 223677888899999999999999887776543 478887788875
No 167
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=97.56 E-value=0.00012 Score=61.01 Aligned_cols=32 Identities=16% Similarity=0.371 Sum_probs=29.2
Q ss_pred eeeeeeEecCCHHHHHHHHHHhhCCeeeeeee
Q 013898 208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFT 239 (434)
Q Consensus 208 ~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~ 239 (434)
+++||++.|+|++++++||+++|||+......
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~ 33 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYTDVLGLRLVKDTV 33 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHHhhcCCeeeeecc
Confidence 68999999999999999999999999887543
No 168
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=97.36 E-value=0.0041 Score=53.75 Aligned_cols=93 Identities=17% Similarity=0.125 Sum_probs=60.7
Q ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC---EEEEEEcCCCCCCCcccccCCCCCCCC
Q 013898 31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD---LRFVFTAPYSPSISDAADAGNSSASLP 107 (434)
Q Consensus 31 ~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~---i~~vl~~p~~~~~~~~~~~~~~~~~~~ 107 (434)
..+-|.++.|+|++++.+||.++||.+....... + ......+..++ .-++ ..+..
T Consensus 8 ~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~--~--~~~y~~f~~~~~~~gG~l-~~~~~----------------- 65 (127)
T COG3324 8 GTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDM--G--EMRYAVFPADGAGAGGGL-MARPG----------------- 65 (127)
T ss_pred CccEEEeeecCCHHHHHHHHHHhhCceecccccC--C--CceEEEEECCCcccccee-ccCCc-----------------
Confidence 4678999999999999999999999998766432 1 02333333222 0011 01000
Q ss_pred CCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccc
Q 013898 108 TFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVIL 156 (434)
Q Consensus 108 ~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~ 156 (434)
+ ..+.+-..+=|.|+|++++.+|+++.|.+++.+++..
T Consensus 66 ---------~--~p~~~~~~iy~~v~did~~l~rv~~~GG~V~~p~~~~ 103 (127)
T COG3324 66 ---------S--PPGGGGWVIYFAVDDIDATLERVVAAGGKVLRPKTEF 103 (127)
T ss_pred ---------C--CCCCCCEEEEEecCChHHHHHHHHhcCCeEEeccccc
Confidence 0 0112223566679999999999999999988887665
No 169
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=97.31 E-value=0.0026 Score=61.23 Aligned_cols=90 Identities=20% Similarity=0.284 Sum_probs=61.8
Q ss_pred eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhh
Q 013898 206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH 285 (434)
Q Consensus 206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~ 285 (434)
-..++-++++|.|++.+..||++++|+++..+.+ .+.++..+ +...+.|.+-..+ +. . .
T Consensus 8 ~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~-----------~~v~L~vg-g~~LL~L~q~~~a--~~------~-~ 66 (265)
T COG2514 8 PTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD-----------GSVTLGVG-GTPLLTLEQFPDA--RR------P-P 66 (265)
T ss_pred CcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC-----------ceEEEeeC-CEEEEEEEeCCCC--CC------C-C
Confidence 3578899999999999999999999999986532 23444433 3345555542211 11 0 1
Q ss_pred cCCCCceEEEEEeCC---HHHHHHHHHHhcCCCCceec
Q 013898 286 NEGAGVQHLALVSED---IFRTLREMRKRSGVGGFEFM 320 (434)
Q Consensus 286 ~~G~GvqHIAf~vdD---I~~av~~L~~~~~~~Gv~fl 320 (434)
.+..|+=|+||.+++ +.+.+.++.+. |+.+.
T Consensus 67 ~~~aGLyH~AfLlP~r~~L~~~l~hl~~~----~~~l~ 100 (265)
T COG2514 67 PRAAGLYHTAFLLPTREDLARVLNHLAEE----GIPLV 100 (265)
T ss_pred ccccceeeeeeecCCHHHHHHHHHHHHhc----CCccc
Confidence 256899999999996 55566777777 76655
No 170
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=97.10 E-value=0.00098 Score=62.68 Aligned_cols=119 Identities=20% Similarity=0.260 Sum_probs=78.1
Q ss_pred ceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeeccc-----CcccccCceEEEEE--cC-CCc--eEEEecccCCCCC
Q 013898 205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAED-----VGTSESGLNSVVLA--NN-DEM--VLLPMNEPVFGTK 274 (434)
Q Consensus 205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d-----~~~~~~g~~s~~l~--~~-~g~--v~i~L~e~~~g~~ 274 (434)
.-+++-|+++.|.|+++++.||+++||+++.+-.+.+. -.+.+.+-.|..|. .| +.. +.|+.|-+..
T Consensus 14 ~~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~--- 90 (299)
T KOG2943|consen 14 DTRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVS--- 90 (299)
T ss_pred cchheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCcc---
Confidence 34677899999999999999999999999875322111 01234444554442 12 222 4445555531
Q ss_pred CCchHHHHHhhcCCCCceEEEEEeCCHHHHHHHHHHh---cCCCCceeccCCCchhhHhHhhhcC
Q 013898 275 RKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKR---SGVGGFEFMPSPPPTYYKNLKNRAG 336 (434)
Q Consensus 275 ~~s~i~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~---~~~~Gv~fl~~pP~~YY~~l~~R~~ 336 (434)
++.-|.+.-||++.++|+...++.++.. ..+.|+.++.. |+.|-=.|..|.+
T Consensus 91 ---------~YelGndfg~i~I~s~dv~~~ve~v~~p~~~~~g~~~~~v~d-PdGykF~l~~~~p 145 (299)
T KOG2943|consen 91 ---------KYELGNDFGGITIASDDVFSKVEKVNAPGGKGSGCGIAFVKD-PDGYKFYLIDRGP 145 (299)
T ss_pred ---------ceeccCCcccEEEeHHHHHHHHHHhcCcCCcccceEEEEEEC-CCCcEEEEeccCC
Confidence 1224788999999999999999999983 23345778876 4877544544443
No 171
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=97.00 E-value=0.01 Score=50.62 Aligned_cols=116 Identities=13% Similarity=0.171 Sum_probs=74.0
Q ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCCh
Q 013898 32 RFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDH 111 (434)
Q Consensus 32 ~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~ 111 (434)
..=+|-|-|.|++++.+||. .|||+.-..-- -...+..+..++|.++|.+...
T Consensus 3 ~mIFvNLPVkDL~~S~~Fy~-alGfk~Npq~s-----de~a~~mi~~~ni~vMLL~~~~--------------------- 55 (133)
T COG3607 3 QMIFVNLPVKDLEASKAFYT-ALGFKFNPQFS-----DEDAACMIISDNIFVMLLEEAR--------------------- 55 (133)
T ss_pred eEEEEecchhhHHHHHHHHH-HhCcccCCCcc-----cccceeEEEeccEEEEEeccHH---------------------
Confidence 34578899999999999998 88998653211 1234566667888888776211
Q ss_pred hHHhHHHH-----hcCCceeEEEEEecC---HHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEee
Q 013898 112 AACRSFAA-----SHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS 177 (434)
Q Consensus 112 ~~~~~~l~-----~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd 177 (434)
.+.|.+ ...+.=.-|||.+.+ +++..+++.+.|+++..+|... +.+.-..++.++|.+..|+-
T Consensus 56 --fq~F~~~~i~dt~~s~evli~ls~~s~eevd~~v~ka~eaGGk~~~~~~d~-gfMYg~~fqDpDGh~wE~l~ 126 (133)
T COG3607 56 --FQTFTKRQIADTTKSREVLISLSAGSREEVDELVDKALEAGGKPANEPQDE-GFMYGRSFQDPDGHVWEFLW 126 (133)
T ss_pred --hhhhcccccccccCCceEEEEeccCcHHHHHHHHHHHHHcCCCCCCCcccc-ccccceeeeCCCCCeEEEEE
Confidence 122221 122333357888774 8999999999999987776543 33323334555665555553
No 172
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=96.74 E-value=0.0069 Score=50.85 Aligned_cols=119 Identities=19% Similarity=0.193 Sum_probs=71.2
Q ss_pred eeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEc-CCCceEEEecccCCCCCCCchHHHHHhhcC
Q 013898 209 LDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLAN-NDEMVLLPMNEPVFGTKRKSQIQTYLEHNE 287 (434)
Q Consensus 209 iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~-~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~ 287 (434)
+=|+++-|.|++++..||.++||++...+.+ .++..+ -...+...+.-+.. +.+.+. ++. .
T Consensus 5 ~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd------------~wvdfDfyGHQ~v~Hl~~q~~-~~~~g~----V~~-~ 66 (138)
T COG3565 5 PFHLAIPVNDLDETRRFYGEVLGCKEGRSTD------------TWVDFDFYGHQVVAHLTPQPD-SQGSGK----VDG-H 66 (138)
T ss_pred ceEEeeeccccHHHHhhhhhhcccccccccc------------eEEEeeecccEEEEEecCCcc-cccCcc----cCC-C
Confidence 4499999999999999999999998765422 111111 01123333322210 011111 111 1
Q ss_pred CCCceEEE--EEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEE
Q 013898 288 GAGVQHLA--LVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQI 365 (434)
Q Consensus 288 G~GvqHIA--f~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqi 365 (434)
+--+-|.. |.++|-.+..++|.++ |+.+. +||.- |+... .-++.-|+-+|+.|..|.+
T Consensus 67 ~v~~pHfGvVl~~edW~alaerlea~----gi~~~-i~P~v-------RF~Ge--------~gEq~TlFl~DP~gN~lEf 126 (138)
T COG3565 67 GVPPPHFGVVLPVEDWFALAERLEAA----GIPFH-IPPKV-------RFKGE--------PGEQRTLFLFDPSGNALEF 126 (138)
T ss_pred CCCCccceEEEEHHHHHHHHHHHHHc----CCCcc-cCceE-------EecCC--------ccceEEEEEECCCCCeeee
Confidence 22266755 5778999999999999 99998 45533 44311 2355667778887776654
No 173
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=96.46 E-value=0.031 Score=48.33 Aligned_cols=91 Identities=16% Similarity=0.118 Sum_probs=56.6
Q ss_pred eeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhc
Q 013898 207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHN 286 (434)
Q Consensus 207 ~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~ 286 (434)
-.+-|.-|.+.|++++.+||+++||.+....++. . .....+........-=-+... . ..-
T Consensus 8 ~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~---~----~~~y~~f~~~~~~~gG~l~~~------~-------~~~ 67 (127)
T COG3324 8 GTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDM---G----EMRYAVFPADGAGAGGGLMAR------P-------GSP 67 (127)
T ss_pred CccEEEeeecCCHHHHHHHHHHhhCceecccccC---C----CceEEEEECCCccccceeccC------C-------cCC
Confidence 3577999999999999999999999998765431 1 022222211110000000000 0 001
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHHhcCCCCceecc
Q 013898 287 EGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMP 321 (434)
Q Consensus 287 ~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~ 321 (434)
.+.+--+|=|.|+||++++++..++ |-+++.
T Consensus 68 p~~~~~~iy~~v~did~~l~rv~~~----GG~V~~ 98 (127)
T COG3324 68 PGGGGWVIYFAVDDIDATLERVVAA----GGKVLR 98 (127)
T ss_pred CCCCCEEEEEecCChHHHHHHHHhc----CCeEEe
Confidence 2234667778899999999999999 778885
No 174
>PRK10148 hypothetical protein; Provisional
Probab=96.38 E-value=0.14 Score=45.50 Aligned_cols=104 Identities=12% Similarity=0.149 Sum_probs=63.1
Q ss_pred EEEe-CCHHHHHHHHHHhcCCcEEEEec---C-----------CCC----ceeEEEEEEEeCCEEEEEEcCCCCCCCccc
Q 013898 37 EFWC-TDATNTARRFSWGLGMPIVAKSD---L-----------STG----NTVHASYLLRSGDLRFVFTAPYSPSISDAA 97 (434)
Q Consensus 37 ~~~V-~da~~a~~fy~~~lGf~~v~~~~---~-----------~~g----~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~ 97 (434)
-|.. .|+++|++||+++||.++..... . +.+ ...+....++.|+..|+++......
T Consensus 6 yL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~~lm~sD~~~~~----- 80 (147)
T PRK10148 6 YLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGSDIMMSDAIPSG----- 80 (147)
T ss_pred EEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECCEEEEEECCCCCc-----
Confidence 3445 48999999999999998765421 0 110 1123456667788888886521100
Q ss_pred ccCCCCCCCCCCChhHHhHHHHhcCCceeEEEEEecCHHH---HHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEE
Q 013898 98 DAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADV---AFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLR 174 (434)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~---a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~ 174 (434)
..++. -..|.+.++|+++ +++ +.+.|++++.++... .||...-.
T Consensus 81 ---------------------~~~~~-~~~l~l~~~d~ee~~~~~~-aLa~gg~v~mpl~~~----------~wg~~~g~ 127 (147)
T PRK10148 81 ---------------------KAHYS-GFTLVLDTQDVEEGKRWFD-NLAANGKIEMAWQET----------FWAHGFGK 127 (147)
T ss_pred ---------------------CCCCC-eEEEEEECCCHHHHHHHHH-HhhCCCEEEecchhc----------chhhccEE
Confidence 01122 3478888889876 444 456888877665443 35665556
Q ss_pred Eeec
Q 013898 175 YVSY 178 (434)
Q Consensus 175 fvd~ 178 (434)
++|+
T Consensus 128 v~D~ 131 (147)
T PRK10148 128 VTDK 131 (147)
T ss_pred EECC
Confidence 6664
No 175
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=96.08 E-value=0.13 Score=43.98 Aligned_cols=90 Identities=11% Similarity=-0.031 Sum_probs=50.3
Q ss_pred Eec-CCHHHHHHHHHHhhCCeeeeeeecccCc-----ccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcC
Q 013898 214 GNV-PELAPAVAYVKSFTGFHEFAEFTAEDVG-----TSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNE 287 (434)
Q Consensus 214 i~V-~dl~~~~~fY~~vLGf~~~~~~~~~d~~-----~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~ 287 (434)
+.+ .|.+++++||+++||++.......++.. .....+....+.. +...|.+...... .. . .
T Consensus 5 L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i--~g~~l~~~d~~~~---~~-~-------~ 71 (128)
T cd06588 5 LWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTI--GGQRLMASDGGPG---FP-F-------T 71 (128)
T ss_pred EeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEE--CCEEEEEEcCCCC---CC-C-------C
Confidence 455 6999999999999999987654321110 0001122222232 2345555544211 10 0 1
Q ss_pred CCCceEEEEEeCC---HHHHHHHHHHhcCCCCceecc
Q 013898 288 GAGVQHLALVSED---IFRTLREMRKRSGVGGFEFMP 321 (434)
Q Consensus 288 G~GvqHIAf~vdD---I~~av~~L~~~~~~~Gv~fl~ 321 (434)
+.+-.++++.|+| +++..++|++. | +++.
T Consensus 72 ~~~~~~l~i~~~~~e~v~~~~~~l~~~----g-~~~~ 103 (128)
T cd06588 72 FGNGISLSVECDSEEEADRLFEALSEG----G-TVLM 103 (128)
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHhcC----C-eEec
Confidence 2335589999997 56666777665 6 6664
No 176
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=95.89 E-value=0.01 Score=49.06 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=30.1
Q ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEec
Q 013898 31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSD 63 (434)
Q Consensus 31 ~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~ 63 (434)
++++||.+.|+|++++.+||++.|||+.+....
T Consensus 1 ~~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~ 33 (138)
T COG0346 1 MGIHHVTLAVPDLEASIDFYTDVLGLRLVKDTV 33 (138)
T ss_pred CceEEEEEeeCCHhHhHHHHHhhcCCeeeeecc
Confidence 468999999999999999999999999988753
No 177
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=95.72 E-value=0.091 Score=52.82 Aligned_cols=84 Identities=12% Similarity=0.046 Sum_probs=55.8
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChh
Q 013898 33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHA 112 (434)
Q Consensus 33 l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~ 112 (434)
.=||.+.|.|++++.+||+..|||.. ...+ ... .+ ...+..++.... +
T Consensus 248 ~IfVNLpV~DL~rS~~FYt~LF~~n~-Fsde-------~a~-cm-~dtI~vMllt~~--D-------------------- 295 (357)
T PRK01037 248 TFSVVLEVQDLRRAKKFYSKMFGLEC-WDGD-------KLF-LL-GKTSLYLQQTKA--E-------------------- 295 (357)
T ss_pred eEEEEeeeCCHHHHHHHHHHHhCCCC-CCCC-------ccc-cc-cCcEEEEEecCC--C--------------------
Confidence 44999999999999999999999985 3322 111 22 344444443311 1
Q ss_pred HHhHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCCCCCCcc
Q 013898 113 ACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVI 155 (434)
Q Consensus 113 ~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p~~ 155 (434)
.+...-.-+||.+++ +|+.+++|+++|++...+|..
T Consensus 296 -------~~~~~evLl~Ls~~Sre~VD~lv~~A~aaGG~~~~~~~D 334 (357)
T PRK01037 296 -------KKNRGTTTLSLELECEHDFVRFLRRWEMLGGELGEQADG 334 (357)
T ss_pred -------CCCcceEEEEeccCCHHHHHHHHHHHHHcCCCCCCCccc
Confidence 122233458888885 899999999999976555543
No 178
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=95.39 E-value=0.34 Score=41.27 Aligned_cols=83 Identities=16% Similarity=0.161 Sum_probs=51.1
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChhHH
Q 013898 35 HVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAAC 114 (434)
Q Consensus 35 HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (434)
+-.+.|.|-+...+||++.|||++...++. ..+.--+++..+|+|-+..+..+
T Consensus 3 ~PvlRVnnR~~ni~FY~~~LGfkll~EEna------~a~lg~~~~~erlvlEESP~~rt--------------------- 55 (125)
T PF14506_consen 3 IPVLRVNNRDLNIDFYQKTLGFKLLSEENA------LAILGDQQKEERLVLEESPSMRT--------------------- 55 (125)
T ss_dssp EEEEEESSHHHHHHHHTTTT--EEEEEETT------EEEEE-TT--EEEEEEE--TTT----------------------
T ss_pred CceEEEcCHHHhHHHHHhccCcEEeecccc------EEEecCCCCceEEEEecCCcccc---------------------
Confidence 457889999999999999999999987651 22222246778888876322110
Q ss_pred hHHHHhcCC-ceeEEEEEecCHHHHHHHHHHcCCC
Q 013898 115 RSFAASHGL-AARSIAVEVEDADVAFNTSVAHGAK 148 (434)
Q Consensus 115 ~~~l~~hG~-gv~~Iaf~V~Dvd~a~~ra~~~Ga~ 148 (434)
..-.|+ -+..|-+.|+++.+. +.+.++|.+
T Consensus 56 ---r~V~G~KKl~~ivIkv~~~~EI-e~LLar~~~ 86 (125)
T PF14506_consen 56 ---RAVEGPKKLNRIVIKVPNPKEI-EALLARGAQ 86 (125)
T ss_dssp ---B--SSS-SEEEEEEEESSHHHH-HHHHHC-S-
T ss_pred ---ccccCcceeeEEEEEcCCHHHH-HHHHhcccc
Confidence 011233 567899999998877 556677765
No 179
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=94.87 E-value=0.026 Score=56.02 Aligned_cols=107 Identities=22% Similarity=0.220 Sum_probs=49.8
Q ss_pred CchHHHHHhhcCCCCceEEEEEe------CCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHh
Q 013898 276 KSQIQTYLEHNEGAGVQHLALVS------EDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEE 349 (434)
Q Consensus 276 ~s~i~~fl~~~~G~GvqHIAf~v------dDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~ 349 (434)
.|++.-++-. .|..++|++.+| .||++..+.|+++ |++.-+. .. +
T Consensus 171 eSe~aAWi~~-~G~~~NH~T~~v~~l~~~~dI~~v~~~l~~~----G~~~n~~--g~-------~--------------- 221 (302)
T PF07063_consen 171 ESEYAAWIAA-HGYHINHFTPRVNRLKKFLDIDAVNAFLKER----GIPMNDS--GG-------E--------------- 221 (302)
T ss_dssp H-HHHHHHHH-HTCS-SEEEEETTT-TT-S-HHHHHHHHHHT----T--B--T--TS-------S---------------
T ss_pred HhHHHHhhcc-cccccceeeceeecccccccHHHHHHHHHHc----CCCcccc--CC-------c---------------
Confidence 4566666666 588899999999 9999999999999 9775520 00 0
Q ss_pred cCeEEecCCCceEEEEEccccC------C---------CCCeEEEEEEeeccccc-cccCc-ccccCCCCCcCCccHHHH
Q 013898 350 LGVLVDRDDQGTLLQIFTKPVG------D---------RPTIFIEIIQRVGCMLK-DEEGK-TYQKGGCGGFGKGNFSEL 412 (434)
Q Consensus 350 ~~iL~D~d~~g~llqifT~~~~------~---------r~~~FfEiIqR~g~~~~-~~~~~-~~~~~~~~GFG~gN~~aL 412 (434)
+-..+++.|.|--|+-.- + -|.=|+||+||.--... ...|. ....--+.||=.+|-..+
T Consensus 222 ----Iegsp~~lLrQtS~~A~~~~v~F~d~~g~~~~~~ip~~f~Ef~~R~~~~~~~~~~~~~~~~~~~yegF~~~sA~~I 297 (302)
T PF07063_consen 222 ----IEGSPDGLLRQTSTMADEEEVTFADGDGSLVEGSIPGSFYEFAQRYPLPEGLILPGDEIAEPILYEGFLPGSADGI 297 (302)
T ss_dssp ----SEECCCCSEEEEEBEEEEEEEEETTETS-ECEEEEEEEEEEEEEE-CTTCCHHHTTSEEEEESB--SSS-------
T ss_pred ----eEECCCCCEEEEeeccceeEEEEecCCCceeeeEeeeeEEeehhhccCcccccCccccccCCcccCCCChhhhhhh
Confidence 111123444444433211 0 13469999999421110 00011 222234689999999999
Q ss_pred HHH
Q 013898 413 FKS 415 (434)
Q Consensus 413 f~a 415 (434)
|||
T Consensus 298 FeS 300 (302)
T PF07063_consen 298 FES 300 (302)
T ss_dssp ---
T ss_pred hcc
Confidence 987
No 180
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=94.71 E-value=0.4 Score=40.51 Aligned_cols=96 Identities=21% Similarity=0.166 Sum_probs=55.9
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChh
Q 013898 33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHA 112 (434)
Q Consensus 33 l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~ 112 (434)
+=|+.+-|.|++++.+||.++||.+.-.... ++ +..-++ | -+++.--...+++ +++ +
T Consensus 5 ~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd--~w---vdfDfy--G-HQ~v~Hl~~q~~~--------~~~-------g 61 (138)
T COG3565 5 PFHLAIPVNDLDETRRFYGEVLGCKEGRSTD--TW---VDFDFY--G-HQVVAHLTPQPDS--------QGS-------G 61 (138)
T ss_pred ceEEeeeccccHHHHhhhhhhcccccccccc--eE---EEeeec--c-cEEEEEecCCccc--------ccC-------c
Confidence 4599999999999999999999988543211 11 111121 2 2222211111110 000 0
Q ss_pred HHhHHHHhcCCce--eEEEEEecCHHHHHHHHHHcCCCCCCCCcc
Q 013898 113 ACRSFAASHGLAA--RSIAVEVEDADVAFNTSVAHGAKPSSPPVI 155 (434)
Q Consensus 113 ~~~~~l~~hG~gv--~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~ 155 (434)
-++.|+.-+ ..+-|.++|=-+..+|+.++|+....+|..
T Consensus 62 ----~V~~~~v~~pHfGvVl~~edW~alaerlea~gi~~~i~P~v 102 (138)
T COG3565 62 ----KVDGHGVPPPHFGVVLPVEDWFALAERLEAAGIPFHIPPKV 102 (138)
T ss_pred ----ccCCCCCCCccceEEEEHHHHHHHHHHHHHcCCCcccCceE
Confidence 123454322 345667888888999999999887766643
No 181
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=92.08 E-value=1.1 Score=38.14 Aligned_cols=80 Identities=15% Similarity=0.243 Sum_probs=48.9
Q ss_pred eeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCC
Q 013898 211 HAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAG 290 (434)
Q Consensus 211 Hv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~G 290 (434)
+=++.|.|.+..++||+++|||+...+-. ++ .++.+..+.-+|.|-|++. -++. .-.|+=
T Consensus 3 ~PvlRVnnR~~ni~FY~~~LGfkll~EEn---------a~--a~lg~~~~~erlvlEESP~---~rtr------~V~G~K 62 (125)
T PF14506_consen 3 IPVLRVNNRDLNIDFYQKTLGFKLLSEEN---------AL--AILGDQQKEERLVLEESPS---MRTR------AVEGPK 62 (125)
T ss_dssp EEEEEESSHHHHHHHHTTTT--EEEEEET---------TE--EEEE-TT--EEEEEEE--T---TT-B--------SSS-
T ss_pred CceEEEcCHHHhHHHHHhccCcEEeeccc---------cE--EEecCCCCceEEEEecCCc---cccc------cccCcc
Confidence 34678899999999999999999886532 12 2233445678899988753 1110 001222
Q ss_pred -ceEEEEEeCCHHHHHHHHHHh
Q 013898 291 -VQHLALVSEDIFRTLREMRKR 311 (434)
Q Consensus 291 -vqHIAf~vdDI~~av~~L~~~ 311 (434)
+++|-+.|+|- .-++.|.++
T Consensus 63 Kl~~ivIkv~~~-~EIe~LLar 83 (125)
T PF14506_consen 63 KLNRIVIKVPNP-KEIEALLAR 83 (125)
T ss_dssp SEEEEEEEESSH-HHHHHHHHC
T ss_pred eeeEEEEEcCCH-HHHHHHHhc
Confidence 99999999986 556777777
No 182
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.45 E-value=3.3 Score=36.35 Aligned_cols=92 Identities=16% Similarity=0.143 Sum_probs=52.4
Q ss_pred EecC-CHHHHHHHHHHhhCCeeeeeeecccCc-ccc----cCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcC
Q 013898 214 GNVP-ELAPAVAYVKSFTGFHEFAEFTAEDVG-TSE----SGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNE 287 (434)
Q Consensus 214 i~V~-dl~~~~~fY~~vLGf~~~~~~~~~d~~-~~~----~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~ 287 (434)
+++. |-+++++||+++||++........+.. ... ..+...-+.- +...|.+....+. .. ...
T Consensus 6 l~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i--~g~~im~sd~~~~--~~--------~~~ 73 (136)
T COG2764 6 LFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRI--GGSTIMLSDAFPD--MG--------ATE 73 (136)
T ss_pred EEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEE--CCEEEEEecCCCc--cC--------ccc
Confidence 4566 899999999999999977654322210 000 0011111111 2234444433210 00 112
Q ss_pred CCC-ceEEEEEeCCHHHHHHHHHHhcCCCCceecc
Q 013898 288 GAG-VQHLALVSEDIFRTLREMRKRSGVGGFEFMP 321 (434)
Q Consensus 288 G~G-vqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~ 321 (434)
+.+ -.=|=+.++|+++..+++.+. |++++.
T Consensus 74 ~~~~s~~l~~~~~d~da~f~~a~~a----Ga~v~m 104 (136)
T COG2764 74 GGGTSLSLDLYVEDVDAVFERAAAA----GATVVM 104 (136)
T ss_pred CCCeeEEEEEEehHHHHHHHHHHhc----CCeEEe
Confidence 233 556777888999999999998 977774
No 183
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=89.24 E-value=4.6 Score=34.25 Aligned_cols=84 Identities=17% Similarity=0.157 Sum_probs=48.1
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCcE-EEEecCCCC---ce-eEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCC
Q 013898 35 HVEFWCTDATNTARRFSWGLGMPI-VAKSDLSTG---NT-VHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTF 109 (434)
Q Consensus 35 HI~~~V~da~~a~~fy~~~lGf~~-v~~~~~~~g---~~-~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~ 109 (434)
|+.|- .++++|..||.++||-.. ......+.. .. .+....+..++..|+...... . +
T Consensus 6 yL~F~-g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~g~~lm~~D~~~-~----------------~ 67 (116)
T PF06983_consen 6 YLWFN-GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIGGQKLMASDGGP-D----------------F 67 (116)
T ss_dssp EEEES-S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEETTEEEEEEEEST-S-----------------
T ss_pred EEEeC-CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEECCeEEEEECCCC-C----------------C
Confidence 34442 799999999999998533 332222111 11 233455677888888765321 0 0
Q ss_pred ChhHHhHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCC
Q 013898 110 DHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGA 147 (434)
Q Consensus 110 ~~~~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga 147 (434)
..+.+ ..+++.++| ++.++++|.+.|-
T Consensus 68 ----------~~~~~-~sl~i~~~~~ee~~~~f~~Ls~gG~ 97 (116)
T PF06983_consen 68 ----------PFGNN-ISLCIECDDEEEIDRIFDKLSEGGQ 97 (116)
T ss_dssp -------------TT-EEEEEEESSHHHHHHHHHHHHTTTE
T ss_pred ----------CCCCc-EEEEEEcCCHHHHHHHHHHHHcCCC
Confidence 12334 377888887 5667777777665
No 184
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=73.42 E-value=29 Score=29.95 Aligned_cols=88 Identities=15% Similarity=0.214 Sum_probs=48.7
Q ss_pred eeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHh----hcC
Q 013898 212 AVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLE----HNE 287 (434)
Q Consensus 212 v~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~----~~~ 287 (434)
|.+-|.|++++.+||. .|||+.-..+..++ .+..+.+ +.+.+.|.+.. ..+.|.. ...
T Consensus 7 vNLPVkDL~~S~~Fy~-alGfk~Npq~sde~--------a~~mi~~--~ni~vMLL~~~-------~fq~F~~~~i~dt~ 68 (133)
T COG3607 7 VNLPVKDLEASKAFYT-ALGFKFNPQFSDED--------AACMIIS--DNIFVMLLEEA-------RFQTFTKRQIADTT 68 (133)
T ss_pred EecchhhHHHHHHHHH-HhCcccCCCccccc--------ceeEEEe--ccEEEEEeccH-------Hhhhhccccccccc
Confidence 4455669999999995 68999876654222 1223332 33555554421 1112221 112
Q ss_pred CCCceEEEEEeC---CHHHHHHHHHHhcCCCCceecc
Q 013898 288 GAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMP 321 (434)
Q Consensus 288 G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~ 321 (434)
.+.=-=|||.+. ++++.+++..+. |-....
T Consensus 69 ~s~evli~ls~~s~eevd~~v~ka~ea----GGk~~~ 101 (133)
T COG3607 69 KSREVLISLSAGSREEVDELVDKALEA----GGKPAN 101 (133)
T ss_pred CCceEEEEeccCcHHHHHHHHHHHHHc----CCCCCC
Confidence 233345777776 466677777777 666553
No 185
>PRK10148 hypothetical protein; Provisional
Probab=64.09 E-value=1e+02 Score=27.09 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=19.1
Q ss_pred EecC-CHHHHHHHHHHhhCCeeeee
Q 013898 214 GNVP-ELAPAVAYVKSFTGFHEFAE 237 (434)
Q Consensus 214 i~V~-dl~~~~~fY~~vLGf~~~~~ 237 (434)
+++. +-+++++||+++||.+....
T Consensus 7 L~f~g~a~eAi~FY~~~Fgae~~~~ 31 (147)
T PRK10148 7 LSFAGNCADAIAYYQQTLGAELLYK 31 (147)
T ss_pred EEeCCCHHHHHHHHHHHhCCEEEEE
Confidence 3443 79999999999999987543
No 186
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=58.72 E-value=8.6 Score=38.97 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=24.2
Q ss_pred eeeeeeEecCCHHHHHHHHHHhhCCee
Q 013898 208 RLDHAVGNVPELAPAVAYVKSFTGFHE 234 (434)
Q Consensus 208 ~iDHv~i~V~dl~~~~~fY~~vLGf~~ 234 (434)
..-||++.|.|++++.+||+.+|||..
T Consensus 247 ~~IfVNLpV~DL~rS~~FYt~LF~~n~ 273 (357)
T PRK01037 247 KTFSVVLEVQDLRRAKKFYSKMFGLEC 273 (357)
T ss_pred ceEEEEeeeCCHHHHHHHHHHHhCCCC
Confidence 345999999999999999999999885
No 187
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=55.41 E-value=1.6e+02 Score=27.06 Aligned_cols=48 Identities=17% Similarity=0.233 Sum_probs=37.8
Q ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEc
Q 013898 32 RFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTA 87 (434)
Q Consensus 32 ~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~ 87 (434)
-..=|++.|+|..++..-+. .|||..++.- .+....|+.|++++.|..
T Consensus 77 ~r~E~E~~v~D~~~~~~il~-~LGF~~~~~V-------kK~R~iY~~~~~~i~lD~ 124 (178)
T COG1437 77 TREEIEIEVSDVEKALEILK-RLGFKEVAVV-------KKTREIYKVGNVTIELDA 124 (178)
T ss_pred ceeeEEEEeCCHHHHHHHHH-HcCCceeeEE-------EEEEEEEeeCCEEEEEec
Confidence 35667899999999888886 8999988763 245677888998888865
No 188
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=50.95 E-value=28 Score=29.97 Aligned_cols=59 Identities=25% Similarity=0.479 Sum_probs=39.6
Q ss_pred CCCceEEEEEeC--CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCc
Q 013898 288 GAGVQHLALVSE--DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQG 360 (434)
Q Consensus 288 G~GvqHIAf~vd--DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g 360 (434)
.+-+-|+||+-. ||+..++++- .++.+.+| ++||..+..-.. -.=.++.-. |+..|=+|
T Consensus 18 nE~~VHlAFRPSN~Dif~Lv~~CP------~lk~iqiP-~SY~~t~Sksi~------mfL~mqgI~-LleGDVwG 78 (131)
T PF08004_consen 18 NEEIVHLAFRPSNKDIFSLVERCP------NLKAIQIP-PSYYKTLSKSIK------MFLEMQGIE-LLEGDVWG 78 (131)
T ss_pred CceEEEEEecCcchHHHHHHHhCC------CCeEEeCC-hHHHHHHhHHHH------HHHHhcCce-eecccccc
Confidence 455889999987 5777777776 57899885 999999865322 111233333 46777665
No 189
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=43.94 E-value=9.7 Score=31.64 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=10.4
Q ss_pred eeeeeeEecCCHHHHHHHHHHhhC
Q 013898 208 RLDHAVGNVPELAPAVAYVKSFTG 231 (434)
Q Consensus 208 ~iDHv~i~V~dl~~~~~fY~~vLG 231 (434)
.++-+.+||+| +++..||+++||
T Consensus 5 ~~e~i~LNV~d-~~~~~fy~~~f~ 27 (101)
T PF14507_consen 5 EFESIELNVPD-AKSQSFYQSIFG 27 (101)
T ss_dssp EE-EEEEEE-T--T---S--H---
T ss_pred EEEEEEEeCCC-hhHHHHHHhccc
Confidence 36778999999 889999999886
No 190
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=42.27 E-value=1.7e+02 Score=24.53 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=14.9
Q ss_pred CCHHHHHHHHHHhhCCeee
Q 013898 217 PELAPAVAYVKSFTGFHEF 235 (434)
Q Consensus 217 ~dl~~~~~fY~~vLGf~~~ 235 (434)
.+-++|++||.++||-...
T Consensus 11 g~a~eA~~fY~~vf~~~~i 29 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEI 29 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEE
T ss_pred CCHHHHHHHHHHHcCCCEE
Confidence 4789999999999995443
No 191
>PF15067 FAM124: FAM124 family
Probab=32.84 E-value=2.6e+02 Score=26.88 Aligned_cols=47 Identities=11% Similarity=0.186 Sum_probs=33.6
Q ss_pred EEEEEeC--CHHHHHHHHHHhcCCcEEEEecCCCCceeEEE-EEEEeCCEEEEEEc
Q 013898 35 HVEFWCT--DATNTARRFSWGLGMPIVAKSDLSTGNTVHAS-YLLRSGDLRFVFTA 87 (434)
Q Consensus 35 HI~~~V~--da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~-~~l~~G~i~~vl~~ 87 (434)
-+.++|+ |.+++++||+-.|+=+...+.. +.+. .++.+-+..+.|+-
T Consensus 131 Rftly~~~~N~~d~vr~Yelil~~~~~~~k~------~FC~F~lys~~~~~iQlsL 180 (236)
T PF15067_consen 131 RFTLYCSFDNYEDMVRFYELILQREPTQQKE------DFCFFTLYSQPGLDIQLSL 180 (236)
T ss_pred EEEEEecCCCHHHHHHHHHHHhccCcceeeC------CcEEEEEecCCCeEEEEEe
Confidence 3678888 9999999999999988765532 2343 56666666665554
No 192
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=31.03 E-value=73 Score=31.80 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=29.9
Q ss_pred hHHhHHHHhcCCceeEEEEEe------cCHHHHHHHHHHcCCCCC
Q 013898 112 AACRSFAASHGLAARSIAVEV------EDADVAFNTSVAHGAKPS 150 (434)
Q Consensus 112 ~~~~~~l~~hG~gv~~Iaf~V------~Dvd~a~~ra~~~Ga~~~ 150 (434)
|....++..||..+.|++.+| .|++++.+.++++|.++-
T Consensus 172 Se~aAWi~~~G~~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 172 SEYAAWIAAHGYHINHFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp -HHHHHHHHHTCS-SEEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred hHHHHhhcccccccceeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 556667777999999999999 999999999999999875
No 193
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.86 E-value=1.1e+02 Score=21.92 Aligned_cols=28 Identities=29% Similarity=0.538 Sum_probs=24.0
Q ss_pred CCceEEEEEeCCHHHHHHHHHHhcCCCCceec
Q 013898 289 AGVQHLALVSEDIFRTLREMRKRSGVGGFEFM 320 (434)
Q Consensus 289 ~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl 320 (434)
.|...+.|.+++...+.+.|+++ |++++
T Consensus 38 ~~~~~v~~~ve~~~~~~~~L~~~----G~~v~ 65 (65)
T cd04882 38 GGKALLIFRTEDIEKAIEVLQER----GVELV 65 (65)
T ss_pred CCeEEEEEEeCCHHHHHHHHHHC----CceEC
Confidence 45778999999999999999998 98764
No 194
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=26.79 E-value=2.1e+02 Score=25.62 Aligned_cols=45 Identities=18% Similarity=0.140 Sum_probs=34.8
Q ss_pred chhhHhHhhhcCCCCChhHHHHHHhcCeEE-ecCCCceEEEEEccccC
Q 013898 325 PTYYKNLKNRAGDVLTDEQIKQCEELGVLV-DRDDQGTLLQIFTKPVG 371 (434)
Q Consensus 325 ~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~-D~d~~g~llqifT~~~~ 371 (434)
.-=-+++.+.++ ++++.+++|++.+++. ..|++|.++.|=+.-..
T Consensus 98 ~l~~dElA~sF~--l~~e~i~qLr~~kiltVh~De~G~Ii~V~~~~~~ 143 (153)
T PRK14584 98 DLDDDELASSFA--LSPELIAQLKSGSCLTLYNDEHGHIIDVKEGLQL 143 (153)
T ss_pred CCChHHHHHHcC--CCHHHHHHHHhCCeEEEEECCCCCEEEeecCCCC
Confidence 333455666777 8899999999999997 78999999998554443
No 195
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=25.63 E-value=1.9e+02 Score=27.59 Aligned_cols=74 Identities=19% Similarity=0.376 Sum_probs=49.9
Q ss_pred hHHHHHhhcCCCCceEEEEEeC---CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcC-------------CCCCh
Q 013898 278 QIQTYLEHNEGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAG-------------DVLTD 341 (434)
Q Consensus 278 ~i~~fl~~~~G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~-------------~~l~~ 341 (434)
.+..|.+ .|..=|.|.++ ++.++++.+|+.++.+|+.+-+..|-+.|+.+-..++ +.+.+
T Consensus 76 ~i~~fa~----agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~ 151 (220)
T COG0036 76 YIEAFAK----AGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQKFIP 151 (220)
T ss_pred HHHHHHH----hCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCcccccCH
Confidence 4444544 56777777765 7999999999997667777766556677776655432 44566
Q ss_pred hHHHHHHhcCeEEe
Q 013898 342 EQIKQCEELGVLVD 355 (434)
Q Consensus 342 ~~~~~l~~~~iL~D 355 (434)
+.+++++++.=+++
T Consensus 152 ~~l~Ki~~lr~~~~ 165 (220)
T COG0036 152 EVLEKIRELRAMID 165 (220)
T ss_pred HHHHHHHHHHHHhc
Confidence 77777776655444
No 196
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=24.72 E-value=3.4e+02 Score=24.38 Aligned_cols=47 Identities=17% Similarity=0.230 Sum_probs=34.5
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEc
Q 013898 33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTA 87 (434)
Q Consensus 33 l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~ 87 (434)
-.=+++.|.|.+.+...+. .|||++++.-. +....++.|++.+.|..
T Consensus 77 ~~E~e~~v~d~~~~~~iL~-~LG~~~~~~v~-------K~R~~~~l~~~~i~lD~ 123 (174)
T TIGR00318 77 RKEIEFKIEDIENALQILK-KLGFKKVYEVI-------KKRRIYQTNELNVSIDD 123 (174)
T ss_pred EEEEEEEECCHHHHHHHHH-HCCCeEEEEEE-------EEEEEEEECCEEEEEEc
Confidence 3447889999988888887 89999877532 33455666888777753
No 197
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=23.81 E-value=2.9e+02 Score=25.62 Aligned_cols=30 Identities=17% Similarity=0.156 Sum_probs=23.1
Q ss_pred eeeeeeeEecCCHHHHHHHHHHhhCCeeee
Q 013898 207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFA 236 (434)
Q Consensus 207 ~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~ 236 (434)
-.+||+++.|.+.+.+-.|-...+-.-...
T Consensus 33 ~~~DHialRvn~~~~A~~~~~~l~~~G~ll 62 (185)
T PF06185_consen 33 YEIDHIALRVNSNETAERWKQALLQCGELL 62 (185)
T ss_dssp -EEEEEEEE-S-HHHHHHHHHHHTTTEEEE
T ss_pred cCCcEEEEecCCHHHHHHHHHHHHHhChhh
Confidence 469999999999999999998888766544
No 198
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=22.41 E-value=2.3e+02 Score=21.24 Aligned_cols=48 Identities=17% Similarity=0.353 Sum_probs=33.5
Q ss_pred HHHHHHhcCeEEecCCCceEEEEEccccCCCC---CeEEEEEEeeccccccccCcccccCCCCCcCCccHHHHHHHHHH
Q 013898 343 QIKQCEELGVLVDRDDQGTLLQIFTKPVGDRP---TIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEE 418 (434)
Q Consensus 343 ~~~~l~~~~iL~D~d~~g~llqifT~~~~~r~---~~FfEiIqR~g~~~~~~~~~~~~~~~~~GFG~gN~~aLf~aie~ 418 (434)
-++.++++++ .++.|-|+|..+++ .||+|+--- ....|++.+.+.++.
T Consensus 16 vL~~f~~~~v--------ni~~I~Srp~~~~~~~~~f~id~~~~--------------------~~~~~~~~~l~~l~~ 66 (75)
T cd04880 16 ALKVFAERGI--------NLTKIESRPSRKGLWEYEFFVDFEGH--------------------IDDPDVKEALEELKR 66 (75)
T ss_pred HHHHHHHCCC--------CEEEEEeeecCCCCceEEEEEEEECC--------------------CCCHHHHHHHHHHHH
Confidence 3555666665 89999999988754 566665421 235688888888875
No 199
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=20.93 E-value=86 Score=26.92 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=22.2
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCCCceecc
Q 013898 293 HLALVSEDIFRTLREMRKRSGVGGFEFMP 321 (434)
Q Consensus 293 HIAf~vdDI~~av~~L~~~~~~~Gv~fl~ 321 (434)
-+-++|+|++++.+.|++. |+.++.
T Consensus 111 lli~r~ed~d~~~~aLed~----gi~~~~ 135 (142)
T COG4747 111 LLIVRVEDIDRAIKALEDA----GIKLIG 135 (142)
T ss_pred EEEEEhhHHHHHHHHHHHc----CCeecC
Confidence 4567899999999999999 999985
Done!