BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013899
(434 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YA4|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
pdb|2YA4|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
pdb|2YA5|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
In Complex With Sialic Acid
pdb|2YA5|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
In Complex With Sialic Acid
pdb|2YA6|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
In Complex With Dana
pdb|2YA6|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
In Complex With Dana
pdb|2YA7|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
In Complex With Zanamivir
pdb|2YA7|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
In Complex With Zanamivir
pdb|2YA7|C Chain C, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
In Complex With Zanamivir
pdb|2YA7|D Chain D, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
In Complex With Zanamivir
pdb|2YA8|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
In Complex With Oseltamivir Carboxylate
pdb|2YA8|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
In Complex With Oseltamivir Carboxylate
Length = 493
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 80 LHVLQQLEDGEITCVLQSDLIKQVFTFNNLN--GKSEYSTIYSENDADQ--YTLVF 131
+H+ + E+GE+T + + + K F +N+L G EY +Y + Q YTL F
Sbjct: 427 VHLARVEENGELTWLKHNPIQKGEFAYNSLQELGNGEYGILYEHTEKGQNAYTLSF 482
>pdb|3H72|A Chain A, Crystal Structure Of Streptococcus Pneumoniae D39
Neuraminidase A Precursor (Nana) In Complex With Nana
pdb|3H72|B Chain B, Crystal Structure Of Streptococcus Pneumoniae D39
Neuraminidase A Precursor (Nana) In Complex With Nana
pdb|3H73|A Chain A, Crystal Structure Of Streptococcus Pneumoniae D39
Neuraminidase A Precursor (Nana) In Complex With Dana
pdb|3H73|B Chain B, Crystal Structure Of Streptococcus Pneumoniae D39
Neuraminidase A Precursor (Nana) In Complex With Dana
Length = 477
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 80 LHVLQQLEDGEITCVLQSDLIKQVFTFNNLN--GKSEYSTIY--SENDADQYTLVF 131
+H+ + E+GE+T + + + K F +N+L G EY +Y +E + YTL F
Sbjct: 410 VHLARVEENGELTWLKHNPIQKGEFAYNSLQELGNGEYGILYEHTEKGQNAYTLSF 465
>pdb|2W20|A Chain A, Structure Of The Catalytic Domain Of The Native Nana
Sialidase From Streptococcus Pneumoniae
pdb|2W20|B Chain B, Structure Of The Catalytic Domain Of The Native Nana
Sialidase From Streptococcus Pneumoniae
Length = 471
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 80 LHVLQQLEDGEITCVLQSDLIKQVFTFNNLN--GKSEYSTIYSENDADQ--YTLVF 131
+H+ + E+GE+T + + + K F +N+L G EY +Y + Q YTL F
Sbjct: 406 VHLARVEENGELTWLKHNPIQKGEFAYNSLQELGNGEYGILYEHTEKGQNAYTLSF 461
>pdb|2VVZ|A Chain A, Structure Of The Catalytic Domain Of Streptococcus
Pneumoniae Sialidase Nana
pdb|2VVZ|B Chain B, Structure Of The Catalytic Domain Of Streptococcus
Pneumoniae Sialidase Nana
Length = 504
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 80 LHVLQQLEDGEITCVLQSDLIKQVFTFNNLN--GKSEYSTIYSENDADQ--YTLVF 131
+H+ + E+GE+T + + + K F +N+L G EY +Y + Q YTL F
Sbjct: 408 VHLARVEENGELTWLKHNPIQKGEFAYNSLQELGNGEYGILYEHTEKGQNAYTLSF 463
>pdb|3H71|A Chain A, Crystal Structure Of Streptococcus Pneumoniae D39
Neuraminidase A Precursor (Nana)
pdb|3H71|B Chain B, Crystal Structure Of Streptococcus Pneumoniae D39
Neuraminidase A Precursor (Nana)
Length = 477
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 80 LHVLQQLEDGEITCVLQSDLIKQVFTFNNLN--GKSEYSTIYSENDADQ--YTLVF 131
+H+ + E+GE+T + + + K F +N+L G EY +Y + Q YTL F
Sbjct: 410 VHLARVEENGELTWLKHNPIQKGEFAYNSLQELGNGEYGILYEHTEKGQNAYTLSF 465
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.142 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,427,294
Number of Sequences: 62578
Number of extensions: 431433
Number of successful extensions: 973
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 972
Number of HSP's gapped (non-prelim): 8
length of query: 434
length of database: 14,973,337
effective HSP length: 102
effective length of query: 332
effective length of database: 8,590,381
effective search space: 2852006492
effective search space used: 2852006492
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)