Query 013899
Match_columns 434
No_of_seqs 174 out of 411
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 08:30:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013899.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013899hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2569 G protein-coupled seve 100.0 3E-100 6E-105 751.0 7.4 416 17-434 18-440 (440)
2 PF06814 Lung_7-TM_R: Lung sev 100.0 3.2E-62 6.9E-67 485.6 28.7 283 121-410 1-295 (295)
3 KOG2568 Predicted membrane pro 100.0 1.2E-53 2.7E-58 439.8 27.2 300 102-415 142-452 (518)
4 PF10192 GpcrRhopsn4: Rhodopsi 99.6 3.5E-14 7.6E-19 138.9 23.7 244 143-398 3-256 (257)
5 KOG2569 G protein-coupled seve 98.2 1.4E-06 3E-11 88.0 5.8 192 10-206 109-393 (440)
6 KOG4290 Predicted membrane pro 98.2 7.4E-05 1.6E-09 75.2 17.2 152 121-276 115-276 (429)
7 PRK10921 twin-arginine protein 76.6 36 0.00079 33.5 11.6 34 243-276 75-108 (258)
8 COG4736 CcoQ Cbb3-type cytochr 75.7 3.1 6.8E-05 31.8 3.0 32 391-422 18-56 (60)
9 PF06454 DUF1084: Protein of u 75.2 80 0.0017 31.5 13.8 95 165-263 21-119 (281)
10 PF08733 PalH: PalH/RIM21; In 67.0 1.6E+02 0.0034 30.3 18.8 54 263-316 183-240 (348)
11 PF06123 CreD: Inner membrane 65.8 77 0.0017 33.7 11.7 38 172-211 300-337 (430)
12 PRK11715 inner membrane protei 52.2 1.4E+02 0.0031 31.7 11.0 38 172-211 306-343 (436)
13 PF09437 Pombe_5TM: Pombe spec 48.6 2.8 6E-05 38.7 -2.1 134 118-266 37-182 (256)
14 TIGR01294 P_lamban phospholamb 48.3 64 0.0014 23.3 5.1 33 329-363 10-44 (52)
15 PF04238 DUF420: Protein of un 46.4 2E+02 0.0044 25.4 9.4 43 247-289 10-52 (133)
16 smart00805 AGTRAP Angiotensin 45.7 1.3E+02 0.0029 27.4 8.1 81 168-253 28-108 (159)
17 PF05545 FixQ: Cbb3-type cytoc 43.9 30 0.00065 24.9 3.2 29 392-427 19-47 (49)
18 PF04272 Phospholamban: Phosph 39.3 1.2E+02 0.0026 21.9 5.4 32 330-363 11-44 (52)
19 PF08400 phage_tail_N: Prophag 37.6 54 0.0012 29.2 4.3 51 117-169 47-99 (134)
20 PF13491 DUF4117: Domain of un 34.1 3.4E+02 0.0073 24.1 9.6 50 170-219 60-109 (171)
21 cd08764 Cyt_b561_CG1275_like N 31.7 4.1E+02 0.0088 25.5 9.6 66 166-231 24-91 (214)
22 PRK10263 DNA translocase FtsK; 28.8 3.1E+02 0.0068 33.4 9.8 40 152-194 62-101 (1355)
23 COG2322 Predicted membrane pro 27.3 4.7E+02 0.01 24.3 8.7 127 226-372 31-172 (177)
24 PRK02983 lysS lysyl-tRNA synth 27.2 8.9E+02 0.019 29.1 13.3 45 380-426 201-245 (1094)
25 PF05393 Hum_adeno_E3A: Human 26.9 71 0.0015 26.4 3.0 26 171-196 36-61 (94)
26 PF01534 Frizzled: Frizzled/Sm 26.5 7E+02 0.015 25.4 12.7 46 305-350 178-227 (328)
27 PF06396 AGTRAP: Angiotensin I 25.7 2.6E+02 0.0057 25.7 6.8 81 168-253 28-108 (162)
28 PF12250 AftA_N: Arabinofurano 25.5 1.5E+02 0.0032 31.3 5.8 41 155-195 305-347 (429)
29 PF10777 YlaC: Inner membrane 24.3 1.3E+02 0.0028 27.3 4.5 39 324-362 8-47 (155)
30 PF06664 MIG-14_Wnt-bd: Wnt-bi 24.2 7E+02 0.015 24.6 23.0 23 193-215 78-100 (298)
31 PF03381 CDC50: LEM3 (ligand-e 23.5 3E+02 0.0064 27.4 7.4 74 114-194 193-271 (278)
32 PF06638 Strabismus: Strabismu 23.4 4E+02 0.0088 28.9 8.6 70 180-251 143-214 (505)
33 PF08041 PetM: PetM family of 23.2 56 0.0012 21.7 1.4 24 244-267 4-27 (31)
34 PRK10582 cytochrome o ubiquino 22.2 5E+02 0.011 22.2 10.2 86 166-260 12-97 (109)
35 PF06781 UPF0233: Uncharacteri 22.0 90 0.0019 25.7 2.8 31 166-196 27-57 (87)
36 PF11460 DUF3007: Protein of u 22.0 2.5E+02 0.0054 24.0 5.5 49 271-321 3-51 (104)
37 PRK15301 hypothetical protein; 21.9 59 0.0013 30.5 1.9 28 40-70 84-111 (186)
No 1
>KOG2569 consensus G protein-coupled seven transmembrane receptor [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-100 Score=750.97 Aligned_cols=416 Identities=56% Similarity=0.983 Sum_probs=402.1
Q ss_pred cccceeEEEEeeecCCCCCceeeccccCCCCcEEEEEEeeeeecC--CCCCCceEEEEEecccChHHHH--HhhccCCCc
Q 013899 17 LSLSSAEIRFNEIRNDNRPIIPFDEFGFTHRGRLELNVSKISLSN--PDLDFSKVGFFLCTHDSWLHVL--QQLEDGEIT 92 (434)
Q Consensus 17 ~~~~~~~~~~~~~~~d~r~~i~i~~FGF~~gG~~~v~v~~~~~~~--~~~~~~~~gf~l~~~~~~~~~~--~~~~~~~~~ 92 (434)
.+.+.|+|++.++.+|+|+.|.+++|||.+-|+..|.++.+.+.+ |+.|.+++|||+.+++++.++. ..++++++.
T Consensus 18 ~~~t~~~~~~~~i~~d~rp~~~~e~~~~~~~~~~~v~~~~~~v~s~~p~~d~sr~~~f~~s~~s~~~~l~p~~~~q~~~~ 97 (440)
T KOG2569|consen 18 ISITRAEIKSLTISDDSRPMILLEKFGQTHVGHVTVSASSVAVVSSDPNLDASRLGFFLLSGESEMAVLAPLEFPQSRGP 97 (440)
T ss_pred hhhhhhhccCcccccCcCcchhhhccceeeecceecccceEEeecCCCCCchhcCCCcccCchHHHhhhhhcccccccCc
Confidence 367999999999999999999999999999999999999888764 6778999999999999998887 778888899
Q ss_pred ccccCCcceeeEEeecCCC--CcceeEEEEeccCCcEEEEEEEecCCceeEEEEEEEEEE-ecCCCCCccccCccCccch
Q 013899 93 CVLQSDLIKQVFTFNNLNG--KSEYSTIYSENDADQYTLVFANCLQQLKVSMDVRSAMYN-LEGRSNNRDYLSAGKTILP 169 (434)
Q Consensus 93 C~l~~~~~~~~f~f~~~~~--~~~~~~~~~V~~~g~Y~l~f~~C~~~~~~~~~~~v~~~n-~n~~G~~~~yLsa~~~plp 169 (434)
|.+++.++.++++|.|+++ .+.++.+|+++++|.|+++|+||.|....++.+++++++ .+|+| .+||||||+.+||
T Consensus 98 ~~~~s~~~l~~~t~~ql~~~p~s~~~~~~~~kd~~~y~l~f~nc~~~~~~sm~V~~~~~~~~~p~g-~~dyl~ag~~~Lp 176 (440)
T KOG2569|consen 98 CVLDSLYVLHMFTFVQLSPPPGSGFSHHYPLKDPGQYSLFFANCVPETKGSMVVRVEMYNLLEPNG-SRDYLSAGETSLP 176 (440)
T ss_pred cccccccchhhhhhhhcCCCCCCCceEEecCCCCceEEEEEeeccccccceEEEEEEeeeccCCCC-cccccccccccCc
Confidence 9999999999999999864 577889999999999999999999999999999999999 66888 8999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHH
Q 013899 170 RIYFLFSLIYFILAGLWIHVLYRKRLTVFRIHFFMLAVVVLKAVNLLCEAEDKSYIKRTGSAHGWDVLFYMFSFLKGITL 249 (434)
Q Consensus 170 ~lY~~~~~~y~~l~~~W~~~~~k~r~~v~~Ih~~m~~li~l~~l~~~~~~~~y~~in~~G~~~~~~v~~~I~~~~k~~l~ 249 (434)
.+|+.|+++|+..++.|.+.|+++++.+++||.+|++++++|++++++++++|||++++|+++||++.+||++++||.++
T Consensus 177 ~ly~~~sl~Yl~~~v~w~~l~~~sk~~v~rIh~lma~lV~lKsl~l~~~al~k~~~sk~g~~~gw~vl~yI~~~lkg~ll 256 (440)
T KOG2569|consen 177 RLYFDFSLLYLDFLVFWCYLLKQSKSVVYRIHDLMAVLVFLKSLSLICHALNKHYVSKTGTVHGWAVLFYIFHFLKGVLL 256 (440)
T ss_pred hhHHHHHHHHHHhhhheeeeEeechHHHHHHHHHHHHHHhHcchHHHhhccceEEEEecCceeeeeehhhHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccceecccccchhhhhhhHHHHHHHHHHHHhhcccCCCCCcccchhhhhhhhhHHHHHHHHHHHHHHHH
Q 013899 250 FTLIVLIGTGWSFLKPYLQDKEKKVLMIVIPLQVVANIAQVVIDETGPYGQDWITWKQVFLLVDVVCCCAVLFPIVWSIK 329 (434)
Q Consensus 250 f~lillIg~Gwg~vkp~L~~~~kkv~~ivi~l~vlania~iv~~~~~~~~~~~~~w~~i~~lvd~~~~~aI~f~ivwsi~ 329 (434)
|.++++||+||+++||+|++|+||++|+++|+||++|+|.|+++|+++++++|.+|++++.++|+.|||+|.|||+||||
T Consensus 257 f~tivligTgwSflk~~l~dkekkv~miviplqvlania~Iv~dEte~~~q~~~tw~~if~lvd~~cc~ai~fpIvwSi~ 336 (440)
T KOG2569|consen 257 FTTIVLIGTGWSFLKPKLQDKEKKVLMIVIPLQVLANIASIVTDETEPLTQDWVTWNQIFLLVDLKCCCAILFPIVWSIR 336 (440)
T ss_pred eeEEEeeccCceeechhhccccceEEEEEecHHHHHHhHheeecCCCcchhhhhhhhheeeeecceeeeEEeeeeeeehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcchHHHHhHHHHHHHHHHHHHHHHHHHHhhheeeeEEeccccccccHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 013899 330 NLREAARTDGKAAVNLMKLTLFRQYYIVVICYIYFTRVVVYGLETITSYKYLWTSVVAGELATLAFYVFTGYKFKPEAHN 409 (434)
Q Consensus 330 ~L~~~s~tdgka~~nl~KL~lfr~Fy~~lv~yiyft~iiv~~l~~~~~~~~~W~~~~~~e~~~l~ffv~i~~~fRP~~~n 409 (434)
||||+|+|||||++|+.||++||+||+++++|+|||||+++.++..++++|+|++.++.|+++++||+++||+|||.+.|
T Consensus 337 ~L~E~s~tDgkaa~nl~kL~lfrqfyi~vi~yiyftrIvv~~l~~~~~fky~W~~~~a~E~at~aFy~l~gykFRP~~~~ 416 (440)
T KOG2569|consen 337 HLRETSKTDGKAAANLIKLPLFRQFYIVVIGYIYFTRIVVFALKTIAVFKYQWLSFAAEEMATLAFYVLMGYKFRPVESN 416 (440)
T ss_pred hhhhccCCcchhhcCcccchHHHHHHhhhhhhhhhhhhhhhhhhhccceeeeeHHHHHHHHHHHHHHhhheeeeeecccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeccCchhHHHHHhcccccccCC
Q 013899 410 PYFVIDDEEEEAAAEALKLEEEFEL 434 (434)
Q Consensus 410 ~yl~~~~~~~~~~~~~l~~~~~~~~ 434 (434)
+|+.++|||||++|++++ ||+||+
T Consensus 417 ~Yf~vddeeee~~~~~l~-e~~~~~ 440 (440)
T KOG2569|consen 417 EYFVVDDEEEEADELALK-EDEFEE 440 (440)
T ss_pred CccccCchhhhhhhhhcc-cccccC
Confidence 999999999999999999 999986
No 2
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=100.00 E-value=3.2e-62 Score=485.60 Aligned_cols=283 Identities=33% Similarity=0.603 Sum_probs=260.2
Q ss_pred eccCCcEEEEEEEecCCc---eeEEEEEEEEEEecCCCCCccccCccCccchhHHHHHHHHHHHHHHHHHHHHHhhccch
Q 013899 121 ENDADQYTLVFANCLQQL---KVSMDVRSAMYNLEGRSNNRDYLSAGKTILPRIYFLFSLIYFILAGLWIHVLYRKRLTV 197 (434)
Q Consensus 121 V~~~g~Y~l~f~~C~~~~---~~~~~~~v~~~n~n~~G~~~~yLsa~~~plp~lY~~~~~~y~~l~~~W~~~~~k~r~~v 197 (434)
|+++|+|++++++|+|+. +.+.+.+.++.++||+| ||||+|+|+|++|++|+++|++++++|++.|.|||+++
T Consensus 1 i~~~G~Y~~~~~~C~~~~~~~~~~~~~~~~i~~~N~~g----yL~a~~~pl~~~y~~~~i~y~~~~~~W~~~~~~~~~~~ 76 (295)
T PF06814_consen 1 ITKTGYYCVFFANCNPSTSSSNSNISFEGSITFKNPYG----YLPAGEYPLPPFYGVMSIVYAVLLIIWLFLCFKNRKSV 76 (295)
T ss_pred CCCceEEEEEEEEcCCccccCCcceEEEEEEEEECCCC----CCChhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 578999999999998752 33444444456678888 99999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc-hhHHHHHHHHHHHHHHHHHHHHHHHhcccccceecccccchhhhh
Q 013899 198 FRIHFFMLAVVVLKAVNLLCEAEDKSYIKRTGSA-HGWDVLFYMFSFLKGITLFTLIVLIGTGWSFLKPYLQDKEKKVLM 276 (434)
Q Consensus 198 ~~Ih~~m~~li~l~~l~~~~~~~~y~~in~~G~~-~~~~v~~~I~~~~k~~l~f~lillIg~Gwg~vkp~L~~~~kkv~~ 276 (434)
+|||++|+++++++++|+++++.+|+++|++|++ ++|.++.++++++|++++|+++++||+|||++||+|++++||+++
T Consensus 77 ~~ih~~i~~vl~l~~~~~~~~~~~y~~~n~~G~~~~~~~~~~~i~~~~k~~~~~~llllis~Gygivkp~L~~~~~~v~~ 156 (295)
T PF06814_consen 77 LPIHYLILAVLILKMLELAFWFIYYHYINKTGTPSEGWMIFAYIFSALKRTLSFFLLLLISLGYGIVKPSLGRREKKVLM 156 (295)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcchheeccccCcceeehhH
Confidence 9999999999999999999999999999999996 899999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhcccCCCCCcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcchHHHHhHHHHHHHHHHHH
Q 013899 277 IVIPLQVVANIAQVVIDETGPYGQDWITWKQVFLLVDVVCCCAVLFPIVWSIKNLREAARTDGKAAVNLMKLTLFRQYYI 356 (434)
Q Consensus 277 ivi~l~vlania~iv~~~~~~~~~~~~~w~~i~~lvd~~~~~aI~f~ivwsi~~L~~~s~tdgka~~nl~KL~lfr~Fy~ 356 (434)
+++++||++++++++.++.++++.++..|..++.++|+ |+...+++.|++++|++ +.+|+|++||++||+|||||++
T Consensus 157 l~i~~~v~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~wi~~sL~~-t~~~lk~~~q~~KL~lyr~f~~ 233 (295)
T PF06814_consen 157 LVILYFVFSNIAYIIREESSPSDSSYASWNFIFFLLPL--CILDLFFIVWIFRSLSK-TIRDLKARRQTAKLSLYRRFYN 233 (295)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccchhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888887777777788999999999 66778999999999998 5789999999999999999999
Q ss_pred HHHHHHHHhhheeeeEE--------eccccccccHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 013899 357 VVICYIYFTRVVVYGLE--------TITSYKYLWTSVVAGELATLAFYVFTGYKFKPEAHNP 410 (434)
Q Consensus 357 ~lv~yiyft~iiv~~l~--------~~~~~~~~W~~~~~~e~~~l~ffv~i~~~fRP~~~n~ 410 (434)
++++|++++++++++.. ...+|+++|+.+++||+++++++++++|+|||++|||
T Consensus 234 ~li~~v~~~~i~~~~~~~~~~~~~~~~~~W~~~W~~~~~~~~l~~~~~~~i~~lwRPs~~n~ 295 (295)
T PF06814_consen 234 VLIAYVVFSRIFVVLSSIIFNTSDSIEKPWKYQWFIEAFWELLYFVFLVAIMYLWRPSENNQ 295 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccHHHHhHHHHHHHHHHHHHHHHHHheeCCCCCCc
Confidence 99999999987665442 2468999999999999999999999999999999997
No 3
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.2e-53 Score=439.81 Aligned_cols=300 Identities=17% Similarity=0.245 Sum_probs=250.0
Q ss_pred eeEEeecCCCCcceeEEEEeccCCcEEEEEEEecCCceeEEEEEEEEEEecCCCCCccccCccCccchhHHHHHHHHHHH
Q 013899 102 QVFTFNNLNGKSEYSTIYSENDADQYTLVFANCLQQLKVSMDVRSAMYNLEGRSNNRDYLSAGKTILPRIYFLFSLIYFI 181 (434)
Q Consensus 102 ~~f~f~~~~~~~~~~~~~~V~~~g~Y~l~f~~C~~~~~~~~~~~v~~~n~n~~G~~~~yLsa~~~plp~lY~~~~~~y~~ 181 (434)
..+++.+.+ -+.....|+|+++|+|++++..|+++. .+++.+....|+||+| ||||.++|+.++|++|+++|.+
T Consensus 142 ~~~t~~~~e-~~m~~~~~~I~ktG~Y~v~~~~~~~s~-~~~~~~~~v~wkNpyG----yL~a~~~Plm~fy~~m~laYvl 215 (518)
T KOG2568|consen 142 VILTFNDAE-VGMSPPAYPIKKTGYYCVYFISCDSSL-ESYKATGSVNWKNPYG----YLPASDAPLMPFYGFMCLAYVL 215 (518)
T ss_pred eeecccccc-cCCCCceEEeccCcEEEEEEEeecCcc-ccccccceEEEECCCC----CcChhhcccchHHHHHHHHHHH
Confidence 455565543 245668999999999999999999874 2344443457889999 9999999999999999999999
Q ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 013899 182 LAGLWIHVLYRKRLTVFRIHFFMLAVVVLKAVNLLCEAEDKSYIKRTGS-AHGWDVLFYMFSFLKGITLFTLIVLIGTGW 260 (434)
Q Consensus 182 l~~~W~~~~~k~r~~v~~Ih~~m~~li~l~~l~~~~~~~~y~~in~~G~-~~~~~v~~~I~~~~k~~l~f~lillIg~Gw 260 (434)
++++|.+.|+|+||+++++|++|+++++++++|+++.+.+|.+.|.+|. |++..++..+++++|.+++|+|+++||+||
T Consensus 216 lgllW~~~~~~y~~diL~lQ~~I~~Vi~lgm~E~av~y~~y~~~N~tG~~~~~~~~~a~i~sa~K~Tlsr~LlLIVSlGY 295 (518)
T KOG2568|consen 216 LGLLWFFQCAQYWHDILPLQKYITAVIALGMAETAVFYSEYANFNSTGMSPKVYTVFASILSAIKKTLSRLLLLIVSLGY 295 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999999 589999999999999999999999999999
Q ss_pred ccceecccccchhhhhhhHHHHHHHHHHHHhhcccCCCCCcc---cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 013899 261 SFLKPYLQDKEKKVLMIVIPLQVVANIAQVVIDETGPYGQDW---ITWKQVFLLVDVVCCCAVLFPIVWSIKNLREAART 337 (434)
Q Consensus 261 g~vkp~L~~~~kkv~~ivi~l~vlania~iv~~~~~~~~~~~---~~w~~i~~lvd~~~~~aI~f~ivwsi~~L~~~s~t 337 (434)
|+|||+|++...|++.++..+++++.+..++-.........- .....++.+.|.+++.||+.++..|+|.||+
T Consensus 296 GIVkP~Lg~~l~rv~~ig~~~~i~s~i~~l~~~~g~~se~~~~~~lf~~ip~ai~d~~f~~wIF~SL~~Tlk~Lr~---- 371 (518)
T KOG2568|consen 296 GIVKPTLGGTLLRVCQIGVIYFIASEILGLARVIGNISELSSLLILFAALPLAILDAAFIYWIFISLAKTLKKLRL---- 371 (518)
T ss_pred ceEecCcchHHHHHHHHhHHHHHHHHHHHHHHHhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 999999999999999999999999888776544332222110 0112345567888889999999999999954
Q ss_pred chHHHHhHHHHHHHHHHHHHHHHHHHHhhhee----eeE---EeccccccccHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 013899 338 DGKAAVNLMKLTLFRQYYIVVICYIYFTRVVV----YGL---ETITSYKYLWTSVVAGELATLAFYVFTGYKFKPEAHNP 410 (434)
Q Consensus 338 dgka~~nl~KL~lfr~Fy~~lv~yiyft~iiv----~~l---~~~~~~~~~W~~~~~~e~~~l~ffv~i~~~fRP~~~n~ 410 (434)
+||.+||+|||||.+++++.+.-....+ +.. ..-..|+.+|+.+.+|.++++..+++|+++|||++||+
T Consensus 372 ----rRn~vKl~lYr~F~n~l~~~Vvas~~~i~~~~~~~~~~~~~~~Wk~~Wv~~a~W~~l~~~iLvvI~~LWrPS~nn~ 447 (518)
T KOG2568|consen 372 ----RRNIVKLSLYRKFTNTLAFSVVASFAFILVETIFYSIMSCNKDWKERWVDTAFWPLLFFLILVVIMFLWRPSQNNQ 447 (518)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhccHHHHHHHHHHHHHHhcCCCCCCc
Confidence 6999999999999999877764221110 111 12357999999999999999999999999999999999
Q ss_pred ceecc
Q 013899 411 YFVID 415 (434)
Q Consensus 411 yl~~~ 415 (434)
|++.+
T Consensus 448 ryA~s 452 (518)
T KOG2568|consen 448 RYAFS 452 (518)
T ss_pred ccccc
Confidence 99884
No 4
>PF10192 GpcrRhopsn4: Rhodopsin-like GPCR transmembrane domain; InterPro: IPR019336 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). This region of 270 amino acids is the seven transmembrane alpha-helical domains included within five GPCRRHODOPSN4 motifs of a G-protein-coupled-receptor (GPCR) protein, conserved from nematodes to humans [].
Probab=99.65 E-value=3.5e-14 Score=138.85 Aligned_cols=244 Identities=16% Similarity=0.250 Sum_probs=159.8
Q ss_pred EEEEEEEEecCCCCCccccCccCccchhHHHHHHHHHHHHHHHHHHHH--HhhccchhhHHHHHHHHHHHHHHHHHHHHH
Q 013899 143 DVRSAMYNLEGRSNNRDYLSAGKTILPRIYFLFSLIYFILAGLWIHVL--YRKRLTVFRIHFFMLAVVVLKAVNLLCEAE 220 (434)
Q Consensus 143 ~~~v~~~n~n~~G~~~~yLsa~~~plp~lY~~~~~~y~~l~~~W~~~~--~k~r~~v~~Ih~~m~~li~l~~l~~~~~~~ 220 (434)
+.+.++...||+|+.++++|++|+.+|.+|.++.++|.++.+.-.... .++|+..++...++++.++++.++.++...
T Consensus 3 ~~~y~i~l~N~~~~~~~hfS~de~gi~~~~~~~~~~y~vl~~~~~~~~~~l~~~~~~h~~~~l~~~~l~l~~~s~~l~~i 82 (257)
T PF10192_consen 3 KIEYEIWLTNGGDFWTSHFSADEQGILEIYLLFLLLYIVLSIISIYSIQSLKKRGLMHPVYKLFSAALLLQFLSLLLNLI 82 (257)
T ss_pred ceEEEEEEEeCCCccccccChhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556776668899999999999999999999999998866544 677889999999999999999999999999
Q ss_pred HHHHHhhcCCc-hhHHHHHHHHHHHHHHHHHHHHHHHhcccccceecccccchhh-hhhhHHHHHHHHHHHHhhc--ccC
Q 013899 221 DKSYIKRTGSA-HGWDVLFYMFSFLKGITLFTLIVLIGTGWSFLKPYLQDKEKKV-LMIVIPLQVVANIAQVVID--ETG 296 (434)
Q Consensus 221 ~y~~in~~G~~-~~~~v~~~I~~~~k~~l~f~lillIg~Gwg~vkp~L~~~~kkv-~~ivi~l~vlania~iv~~--~~~ 296 (434)
.|-....+|.. ....++..+++.+-+.++..+++++|.||++.|++++...+.. ..+.+.+.++.-+..+.-+ +.+
T Consensus 83 h~~~ya~nG~G~~~l~~~g~i~~~~s~~~~~lLLllla~GwTi~~~~~s~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d 162 (257)
T PF10192_consen 83 HYIVYAYNGVGIPFLKVLGQIFDILSQILFLLLLLLLAKGWTITRSRLSQSNSVKLIVFIILYVVLQVILFIWENRFYFD 162 (257)
T ss_pred HHHHHHccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHcccccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 88888899986 6788999999999999999999999999999999999654433 3333334444444443312 223
Q ss_pred CCCC--cccchhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHhhcchHHHHhHHHHHHHHHHHHHHHHHHH-HhhheeeeE
Q 013899 297 PYGQ--DWITWKQVFL-LVDVVCCCAVLFPIVWSIKNLREAARTDGKAAVNLMKLTLFRQYYIVVICYIY-FTRVVVYGL 372 (434)
Q Consensus 297 ~~~~--~~~~w~~i~~-lvd~~~~~aI~f~ivwsi~~L~~~s~tdgka~~nl~KL~lfr~Fy~~lv~yiy-ft~iiv~~l 372 (434)
+++. .+.+|-...+ .+-++...+ ..++.++.+ +.+++.+|.+-|.+|...-..+.. ++.++.. -
T Consensus 163 ~~~~~~~y~s~pGy~li~lri~~~~~----F~~~~~~t~-------~~~~~~~k~~Fy~~f~~~~~lWFl~~Pv~~~i-a 230 (257)
T PF10192_consen 163 PHSYLYFYDSWPGYILIALRIVLAIW----FIYGLYQTI-------SKEKDPEKRKFYLPFGIIFSLWFLSLPVIVII-A 230 (257)
T ss_pred cccceeecccHHHHHHHHHHHHHHHH----HHHHHHHHH-------HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 3221 2334433222 222222222 122333321 123445788888998755444432 2332221 1
Q ss_pred EeccccccccHHHHHHHHHHHHHHHH
Q 013899 373 ETITSYKYLWTSVVAGELATLAFYVF 398 (434)
Q Consensus 373 ~~~~~~~~~W~~~~~~e~~~l~ffv~ 398 (434)
....||..+=+.........++++++
T Consensus 231 ~~v~~~~R~kvv~~~~~~~~~~~~~~ 256 (257)
T PF10192_consen 231 HFVDPWVREKVVTGGNLLIQFIAYIV 256 (257)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHh
Confidence 22445433333345555566655543
No 5
>KOG2569 consensus G protein-coupled seven transmembrane receptor [Signal transduction mechanisms]
Probab=98.24 E-value=1.4e-06 Score=87.99 Aligned_cols=192 Identities=15% Similarity=0.048 Sum_probs=128.4
Q ss_pred HHHHHHhcccceeEEEEeeecCCCCCceeeccccCCCCcEEEEEEeeeeecCCCC--C-CceEEEEEecccChHHHHHhh
Q 013899 10 CVLVFQLLSLSSAEIRFNEIRNDNRPIIPFDEFGFTHRGRLELNVSKISLSNPDL--D-FSKVGFFLCTHDSWLHVLQQL 86 (434)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~d~r~~i~i~~FGF~~gG~~~v~v~~~~~~~~~~--~-~~~~gf~l~~~~~~~~~~~~~ 86 (434)
+..+.+..+|.+++-||.+++||.|...++.++|+..+|+|.|+++..+...|+. | .+..++.|++.... ..+.|+
T Consensus 109 ~t~~ql~~~p~s~~~~~~~~kd~~~y~l~f~nc~~~~~~sm~V~~~~~~~~~p~g~~dyl~ag~~~Lp~ly~~-~sl~Yl 187 (440)
T KOG2569|consen 109 FTFVQLSPPPGSGFSHHYPLKDPGQYSLFFANCVPETKGSMVVRVEMYNLLEPNGSRDYLSAGETSLPRLYFD-FSLLYL 187 (440)
T ss_pred hhhhhcCCCCCCCceEEecCCCCceEEEEEeeccccccceEEEEEEeeeccCCCCcccccccccccCchhHHH-HHHHHH
Confidence 4455678889999999999999999999999999999999999998666544543 2 25566777765443 333444
Q ss_pred ccCCCcccccCCc---ce-------------------------------------------------eeEEeecC-----
Q 013899 87 EDGEITCVLQSDL---IK-------------------------------------------------QVFTFNNL----- 109 (434)
Q Consensus 87 ~~~~~~C~l~~~~---~~-------------------------------------------------~~f~f~~~----- 109 (434)
+....-|.+..+. ++ .+|+--+.
T Consensus 188 ~~~v~w~~l~~~sk~~v~rIh~lma~lV~lKsl~l~~~al~k~~~sk~g~~~gw~vl~yI~~~lkg~llf~tivligTgw 267 (440)
T KOG2569|consen 188 DFLVFWCYLLKQSKSVVYRIHDLMAVLVFLKSLSLICHALNKHYVSKTGTVHGWAVLFYIFHFLKGVLLFTTIVLIGTGW 267 (440)
T ss_pred HhhhheeeeEeechHHHHHHHHHHHHHHhHcchHHHhhccceEEEEecCceeeeeehhhHHHHHhhhhheeEEEeeccCc
Confidence 4443444431100 00 01100000
Q ss_pred ---CC--CcceeEEEE---------------ec-cCCcEEEEEEEecC----CceeEEEEEEEEEEec--------CCCC
Q 013899 110 ---NG--KSEYSTIYS---------------EN-DADQYTLVFANCLQ----QLKVSMDVRSAMYNLE--------GRSN 156 (434)
Q Consensus 110 ---~~--~~~~~~~~~---------------V~-~~g~Y~l~f~~C~~----~~~~~~~~~v~~~n~n--------~~G~ 156 (434)
+| .+.-++.+. ++ +++.|..+++-|.- +..-...+...+.|.. +||
T Consensus 268 Sflk~~l~dkekkv~miviplqvlania~Iv~dEte~~~q~~~tw~~if~lvd~~cc~ai~fpIvwSi~~L~E~s~tDg- 346 (440)
T KOG2569|consen 268 SFLKPKLQDKEKKVLMIVIPLQVLANIASIVTDETEPLTQDWVTWNQIFLLVDLKCCCAILFPIVWSIRHLRETSKTDG- 346 (440)
T ss_pred eeechhhccccceEEEEEecHHHHHHhHheeecCCCcchhhhhhhhheeeeecceeeeEEeeeeeeehhhhhhccCCcc-
Confidence 00 001011111 12 36777777777752 2233444555667777 666
Q ss_pred CccccCccCccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHH
Q 013899 157 NRDYLSAGKTILPRIYFLFSLIYFILAGLWIHVLYRKRLTVFRIHFFMLA 206 (434)
Q Consensus 157 ~~~yLsa~~~plp~lY~~~~~~y~~l~~~W~~~~~k~r~~v~~Ih~~m~~ 206 (434)
++++++.|||.++-.+.++.+-....|++...+++..++++||+.-+
T Consensus 347 ---kaa~nl~kL~lfrqfyi~vi~yiyftrIvv~~l~~~~~fky~W~~~~ 393 (440)
T KOG2569|consen 347 ---KAAANLIKLPLFRQFYIVVIGYIYFTRIVVFALKTIAVFKYQWLSFA 393 (440)
T ss_pred ---hhhcCcccchHHHHHHhhhhhhhhhhhhhhhhhhhccceeeeeHHHH
Confidence 99999999999999999999999999999999999999999997543
No 6
>KOG4290 consensus Predicted membrane protein [Function unknown]
Probab=98.21 E-value=7.4e-05 Score=75.23 Aligned_cols=152 Identities=11% Similarity=0.152 Sum_probs=103.6
Q ss_pred eccCCcEEEEEEEecC----CceeEEEEEEEEEEecCC--CC-Cccc-cCccCccchhHHHHHHHHHHHHHHHHHHHHHh
Q 013899 121 ENDADQYTLVFANCLQ----QLKVSMDVRSAMYNLEGR--SN-NRDY-LSAGKTILPRIYFLFSLIYFILAGLWIHVLYR 192 (434)
Q Consensus 121 V~~~g~Y~l~f~~C~~----~~~~~~~~~v~~~n~n~~--G~-~~~y-Lsa~~~plp~lY~~~~~~y~~l~~~W~~~~~k 192 (434)
|..+-.|.++.+.|.. +++.--+...+|...||+ ++ +-+| .|++|..+..+|+.|.++|+++.++-+...+
T Consensus 115 iPgp~~W~v~l~acytCqw~dss~~ntI~ydi~LtNPn~ea~~pft~~fS~deqnlie~fll~llvY~vL~~iq~~av~- 193 (429)
T KOG4290|consen 115 IPGPQTWHVFLAACYTCQWDDSSQMNTIGYDILLTNPNIEAIDPFTLPFSLDEQNLIEAFLLMLLVYMVLVLIQGLAVT- 193 (429)
T ss_pred cCCcceeeeeeeecccccccCcCccccccceEEEeCCcccccCccccceeeccchHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 3446688888888862 222223334444545554 32 3456 8999999999999999999999999888776
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--chhHHHHHHHHHHHHHHHHHHHHHHHhcccccceeccccc
Q 013899 193 KRLTVFRIHFFMLAVVVLKAVNLLCEAEDKSYIKRTGS--AHGWDVLFYMFSFLKGITLFTLIVLIGTGWSFLKPYLQDK 270 (434)
Q Consensus 193 ~r~~v~~Ih~~m~~li~l~~l~~~~~~~~y~~in~~G~--~~~~~v~~~I~~~~k~~l~f~lillIg~Gwg~vkp~L~~~ 270 (434)
|+-.|.|...+.++..+.++..+...++-...++|. |. ......++......-...++++.++||.|+++.-+..
T Consensus 194 --rkm~P~~~il~vlvtm~lv~~~licanllhfa~dG~Gep~-~~~aaEvldisS~~~~~lLLi~LakGW~i~r~~~s~~ 270 (429)
T KOG4290|consen 194 --RKMLPSWLILLVLVTMFLVQAGLICANLLHFAKDGFGEPK-FFDAAEVLDISSSLPAYLLLIWLAKGWVIFRVAASMS 270 (429)
T ss_pred --cccCchHhHHHHHHHHHHHHHHHHHHHHHHHhhccCCcee-ecCHHHHHHHHhhHHHHHHHHHHhccceEEeehhhcc
Confidence 455677777777777777766555555444456655 42 2223344556666778888999999999999987764
Q ss_pred chhhhh
Q 013899 271 EKKVLM 276 (434)
Q Consensus 271 ~kkv~~ 276 (434)
..-+.|
T Consensus 271 ~wds~m 276 (429)
T KOG4290|consen 271 RWDSPM 276 (429)
T ss_pred ccccch
Confidence 443344
No 7
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=76.56 E-value=36 Score=33.50 Aligned_cols=34 Identities=18% Similarity=0.431 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhcccccceecccccchhhhh
Q 013899 243 FLKGITLFTLIVLIGTGWSFLKPYLQDKEKKVLM 276 (434)
Q Consensus 243 ~~k~~l~f~lillIg~Gwg~vkp~L~~~~kkv~~ 276 (434)
++-.++....=+++=.-|.+++|-|-++|||...
T Consensus 75 sl~~g~~la~P~ilyqiw~Fi~PgLy~~Err~~~ 108 (258)
T PRK10921 75 TFMVSLILSAPVILYQVWAFIAPALYKHERRLVV 108 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 3344555666677889999999999999998743
No 8
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=75.71 E-value=3.1 Score=31.81 Aligned_cols=32 Identities=22% Similarity=0.451 Sum_probs=22.2
Q ss_pred HHHHHHHHhhhcccCCCCCC-----c--eeccCchhHHH
Q 013899 391 ATLAFYVFTGYKFKPEAHNP-----Y--FVIDDEEEEAA 422 (434)
Q Consensus 391 ~~l~ffv~i~~~fRP~~~n~-----y--l~~~~~~~~~~ 422 (434)
.+++|++++.+.|||..+.. | +.++||++|..
T Consensus 18 ~~l~fiavi~~ayr~~~K~~~d~aa~~~l~l~Dd~q~~~ 56 (60)
T COG4736 18 FTLFFIAVIYFAYRPGKKGEFDEAARGILPLNDDAQDAA 56 (60)
T ss_pred HHHHHHHHHHHHhcccchhhHHHHhccCCCCCcchhhhh
Confidence 56677888999999987643 3 56666655553
No 9
>PF06454 DUF1084: Protein of unknown function (DUF1084); InterPro: IPR009457 This entry consists of several hypothetical plant specific proteins of unknown function.
Probab=75.23 E-value=80 Score=31.47 Aligned_cols=95 Identities=16% Similarity=0.192 Sum_probs=51.0
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHhh----ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHH
Q 013899 165 KTILPRIYFLFSLIYFILAGLWIHVLYRK----RLTVFRIHFFMLAVVVLKAVNLLCEAEDKSYIKRTGSAHGWDVLFYM 240 (434)
Q Consensus 165 ~~plp~lY~~~~~~y~~l~~~W~~~~~k~----r~~v~~Ih~~m~~li~l~~l~~~~~~~~y~~in~~G~~~~~~v~~~I 240 (434)
+.-.-.+|..++.+|++.+++=++.+.|- ++.-...|++.-.+.++.. ...+.+ ......|....-.+..++
T Consensus 21 ~~~~~~~~~~La~iy~~v~~~aliQl~ri~~r~~~~~~t~qkvf~ll~~l~~---~~R~iy-F~~~~~~~~~~~~~~~~i 96 (281)
T PF06454_consen 21 DKWQDGLFYALAAIYLLVALVALIQLIRIQYRVPKYGWTTQKVFHLLIFLAN---LVRAIY-FFLLPSVFLIDPNVLDYI 96 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhheeEeccccCccHHHHHHHHHHHHH---HHHeEE-EEEhHhhHhcChHHHHHH
Confidence 34456678899999999888888877552 2233455555444444322 234442 333344443222344455
Q ss_pred HHHHHHHHHHHHHHHHhcccccc
Q 013899 241 FSFLKGITLFTLIVLIGTGWSFL 263 (434)
Q Consensus 241 ~~~~k~~l~f~lillIg~Gwg~v 263 (434)
+..+=..++|.+-.++-.=|.-+
T Consensus 97 L~~lP~~lfFSty~llvlfWaeI 119 (281)
T PF06454_consen 97 LNDLPTFLFFSTYTLLVLFWAEI 119 (281)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHH
Confidence 55555555665555554444433
No 10
>PF08733 PalH: PalH/RIM21; InterPro: IPR014844 PalH (also known as RIM21) is a transmembrane protein required for proteolytic cleavage of Rim101/PacC transcription factors which are activated by C-terminal proteolytic processing. Rim101/PacC family proteins play a key role in pH-dependent responses and PalH has been implicated as a pH sensor [].
Probab=67.04 E-value=1.6e+02 Score=30.35 Aligned_cols=54 Identities=11% Similarity=0.071 Sum_probs=28.5
Q ss_pred ceecccccchhh-hhhhHHHHHHHHHHHHhhcccCC---CCCcccchhhhhhhhhHHH
Q 013899 263 LKPYLQDKEKKV-LMIVIPLQVVANIAQVVIDETGP---YGQDWITWKQVFLLVDVVC 316 (434)
Q Consensus 263 vkp~L~~~~kkv-~~ivi~l~vlania~iv~~~~~~---~~~~~~~w~~i~~lvd~~~ 316 (434)
.|=+=..+||++ ..++..+-+++++...+..-... ..+....+.....++.++.
T Consensus 183 ~rlF~R~~eK~~i~~vG~~L~i~~~il~ai~~f~~~~~~~~~~~~~lp~~~yl~~ial 240 (348)
T PF08733_consen 183 IRLFPRQKEKRIIFWVGFILIILDQILWAINQFSYFDSDPNSFLDILPAFSYLFRIAL 240 (348)
T ss_pred HHhhcccCcEEEEeeHHHHHHHHHHHHHHHHHhccCCCCccccccchHHHHHHHHHHH
Confidence 343334556766 44555666667776655442221 2223345666666777654
No 11
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=65.83 E-value=77 Score=33.68 Aligned_cols=38 Identities=11% Similarity=0.341 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Q 013899 172 YFLFSLIYFILAGLWIHVLYRKRLTVFRIHFFMLAVVVLK 211 (434)
Q Consensus 172 Y~~~~~~y~~l~~~W~~~~~k~r~~v~~Ih~~m~~li~l~ 211 (434)
|+++++.-.. .++.++-. -+|..++++||++-++...-
T Consensus 300 YgiLFI~LTF-~~fflfE~-~~~~~iHpiQY~LVGlAl~l 337 (430)
T PF06123_consen 300 YGILFIGLTF-LAFFLFEL-LSKLRIHPIQYLLVGLALVL 337 (430)
T ss_pred HHHHHHHHHH-HHHHHHHH-HhcCcccHHHHHHHHHHHHH
Confidence 5555544322 23333333 35668999999987665443
No 12
>PRK11715 inner membrane protein; Provisional
Probab=52.19 E-value=1.4e+02 Score=31.72 Aligned_cols=38 Identities=13% Similarity=0.472 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Q 013899 172 YFLFSLIYFILAGLWIHVLYRKRLTVFRIHFFMLAVVVLK 211 (434)
Q Consensus 172 Y~~~~~~y~~l~~~W~~~~~k~r~~v~~Ih~~m~~li~l~ 211 (434)
|+++++.- .+++++++-. -++..++++||++-++....
T Consensus 306 YgiLFI~L-TF~~fFlfE~-~~~~~iHpiQYlLVGlAl~l 343 (436)
T PRK11715 306 YAILFIAL-TFAAFFLFEL-LKKLRIHPVQYLLVGLALVL 343 (436)
T ss_pred HHHHHHHH-HHHHHHHHHH-hcCceecHHHHHHHHHHHHH
Confidence 44444432 2333334433 35678999999876655433
No 13
>PF09437 Pombe_5TM: Pombe specific 5TM protein; InterPro: IPR018291 This entry represents a group of proteins containing five transmembrane regions. These proteins are found exclusively in Schizosaccharomyces pombe (Fission yeast).
Probab=48.60 E-value=2.8 Score=38.68 Aligned_cols=134 Identities=13% Similarity=0.195 Sum_probs=77.8
Q ss_pred EEEeccCCcEEEEEEEec-CCceeEEE-----EEEEEEEecCCCCCccccCccCccchhHHHHHHHHHHHHHHHHHHHHH
Q 013899 118 IYSENDADQYTLVFANCL-QQLKVSMD-----VRSAMYNLEGRSNNRDYLSAGKTILPRIYFLFSLIYFILAGLWIHVLY 191 (434)
Q Consensus 118 ~~~V~~~g~Y~l~f~~C~-~~~~~~~~-----~~v~~~n~n~~G~~~~yLsa~~~plp~lY~~~~~~y~~l~~~W~~~~~ 191 (434)
+.-|+++|-||+...--. ++....++ +.-+-.|.+.-| .-+|+|..|+.-.. .+...|++-|.
T Consensus 37 ~i~I~~T~sYCvAar~mtmdgaefnldlmgysvsedqinndeig-iwnyisvaemggvl----------lflsywiwtcl 105 (256)
T PF09437_consen 37 TILINETGSYCVAARPMTMDGAEFNLDLMGYSVSEDQINNDEIG-IWNYISVAEMGGVL----------LFLSYWIWTCL 105 (256)
T ss_pred EEEecCccceEEEEeeeecccceecccccccccchhhcCcccee-eeeEEEhhhcCcee----------ehhHHHHHHHH
Confidence 455788999987654221 11111111 111111222223 44577776655332 24568999999
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHH-HHHHH-HHHHhhcCCc----hhHHHHHHHHHHHHHHHHHHHHHHHhccccccee
Q 013899 192 RKRLTVFRIHFFMLAVVVLKAVNLL-CEAED-KSYIKRTGSA----HGWDVLFYMFSFLKGITLFTLIVLIGTGWSFLKP 265 (434)
Q Consensus 192 k~r~~v~~Ih~~m~~li~l~~l~~~-~~~~~-y~~in~~G~~----~~~~v~~~I~~~~k~~l~f~lillIg~Gwg~vkp 265 (434)
...+-++|-|+.+...+++.++.-- -..+. |-+ |.. .-.--.+-|..++|.-+-++.++--++|.|+.|.
T Consensus 106 hfskiifpaqkviClYIflfalnqtlqecieeyvF----ssecikyrqFysvyeiidFlRTnfyrlfviycalgfgitRT 181 (256)
T PF09437_consen 106 HFSKIIFPAQKVICLYIFLFALNQTLQECIEEYVF----SSECIKYRQFYSVYEIIDFLRTNFYRLFVIYCALGFGITRT 181 (256)
T ss_pred hHhheecccceEEEEEeehhhcChhHHHHHHHhee----eeEEEEecccccHHHHHHHHHhhhhhhheeeecccccceee
Confidence 8888999999887777766554332 11111 111 111 1122245678899999999999999999999884
Q ss_pred c
Q 013899 266 Y 266 (434)
Q Consensus 266 ~ 266 (434)
.
T Consensus 182 v 182 (256)
T PF09437_consen 182 V 182 (256)
T ss_pred e
Confidence 4
No 14
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=48.34 E-value=64 Score=23.26 Aligned_cols=33 Identities=27% Similarity=0.583 Sum_probs=24.0
Q ss_pred HHHHHHhhc--chHHHHhHHHHHHHHHHHHHHHHHHH
Q 013899 329 KNLREAART--DGKAAVNLMKLTLFRQYYIVVICYIY 363 (434)
Q Consensus 329 ~~L~~~s~t--dgka~~nl~KL~lfr~Fy~~lv~yiy 363 (434)
..+|.+|+. .++|++|++ .+|-+|..+++|-+.
T Consensus 10 sairras~ie~~~qar~~lq--~lfvnf~liliclll 44 (52)
T TIGR01294 10 SAIRRASTIEMPQQARQNLQ--NLFINFCLILICLLL 44 (52)
T ss_pred HHHHHHHhccCCHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 345666654 567888886 789999988888764
No 15
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=46.39 E-value=2e+02 Score=25.45 Aligned_cols=43 Identities=16% Similarity=0.270 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcccccceecccccchhhhhhhHHHHHHHHHHH
Q 013899 247 ITLFTLIVLIGTGWSFLKPYLQDKEKKVLMIVIPLQVVANIAQ 289 (434)
Q Consensus 247 ~l~f~lillIg~Gwg~vkp~L~~~~kkv~~ivi~l~vlania~ 289 (434)
++-.+..+++..||..+|..--+.-|+..+....+..+.-+.|
T Consensus 10 ~~~~~s~~ll~~g~~~Ir~~~~~~Hr~~Ml~a~~ls~lFlv~Y 52 (133)
T PF04238_consen 10 VLNAISAVLLLIGWYFIRRGRIKLHRKLMLTAFVLSALFLVSY 52 (133)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555677889999995444444555444444444444444
No 16
>smart00805 AGTRAP Angiotensin II, type I receptor-associated protein. This family consists of several angiotensin II, type I receptor-associated protein (AGTRAP) sequences. AGTRAP is known to interact specifically with the C-terminal cytoplasmic region of the angiotensin II type 1 (AT(1)) receptor to regulate different aspects of AT(1) receptor physiology. The function of this family is unclear.
Probab=45.74 E-value=1.3e+02 Score=27.38 Aligned_cols=81 Identities=15% Similarity=0.205 Sum_probs=53.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHH
Q 013899 168 LPRIYFLFSLIYFILAGLWIHVLYRKRLTVFRIHFFMLAVVVLKAVNLLCEAEDKSYIKRTGSAHGWDVLFYMFSFLKGI 247 (434)
Q Consensus 168 lp~lY~~~~~~y~~l~~~W~~~~~k~r~~v~~Ih~~m~~li~l~~l~~~~~~~~y~~in~~G~~~~~~v~~~I~~~~k~~ 247 (434)
+|.-|.+--+.|+++ .+|.. ..|+++-.+|-........-..-++.-.++|...+...+ .+|.+..-|++++-+=
T Consensus 28 ~p~aY~f~Nf~~l~~-~~WAi---~~kdSidaV~m~L~~~~~sI~~DIi~i~i~fp~~~~~d~-~~fs~gmaIlnLiLrP 102 (159)
T smart00805 28 FSGAYAWANFTILAL-GVWAV---AQRDSIDAIQMFLGGLLATIFLDILLISIFYTEVPLRDT-GRFGVGMAILSLLLKP 102 (159)
T ss_pred ccchhHHHhHHHHHH-HHHHH---HhccchHHHHHHHHHHHHHHHHHHHHheeeccccccccc-chhhHHHHHHHHHHHH
Confidence 456666666666554 45554 357788899987777776666777777777777653222 4688888888876555
Q ss_pred HHHHHH
Q 013899 248 TLFTLI 253 (434)
Q Consensus 248 l~f~li 253 (434)
++..++
T Consensus 103 ~S~~ll 108 (159)
T smart00805 103 LSCCLV 108 (159)
T ss_pred HHHHHH
Confidence 665554
No 17
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=43.93 E-value=30 Score=24.93 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=18.0
Q ss_pred HHHHHHHhhhcccCCCCCCceeccCchhHHHHHhcc
Q 013899 392 TLAFYVFTGYKFKPEAHNPYFVIDDEEEEAAAEALK 427 (434)
Q Consensus 392 ~l~ffv~i~~~fRP~~~n~yl~~~~~~~~~~~~~l~ 427 (434)
..+|..++.|.|||..+. +=||.+..+++
T Consensus 19 ~~~F~gi~~w~~~~~~k~-------~~e~aa~lpl~ 47 (49)
T PF05545_consen 19 FVFFIGIVIWAYRPRNKK-------RFEEAANLPLD 47 (49)
T ss_pred HHHHHHHHHHHHcccchh-------hHHHHHccCcc
Confidence 334446677889998532 23556666666
No 18
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=39.26 E-value=1.2e+02 Score=21.87 Aligned_cols=32 Identities=28% Similarity=0.598 Sum_probs=22.9
Q ss_pred HHHHHhhc--chHHHHhHHHHHHHHHHHHHHHHHHH
Q 013899 330 NLREAART--DGKAAVNLMKLTLFRQYYIVVICYIY 363 (434)
Q Consensus 330 ~L~~~s~t--dgka~~nl~KL~lfr~Fy~~lv~yiy 363 (434)
.+|.+|+. ..+|++|++ .+|-+|..+++|-+.
T Consensus 11 airrastiev~~qa~qnlq--elfvnfcliliclll 44 (52)
T PF04272_consen 11 AIRRASTIEVPQQARQNLQ--ELFVNFCLILICLLL 44 (52)
T ss_dssp HHHHHHTSSSCHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHhhccCCHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 45666654 457788876 789999988888763
No 19
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=37.55 E-value=54 Score=29.21 Aligned_cols=51 Identities=16% Similarity=0.153 Sum_probs=36.5
Q ss_pred EEEEec-cCCcEEEEEEEecCCceeEEEEEEEEEEecCCCCCccccCc-cCccch
Q 013899 117 TIYSEN-DADQYTLVFANCLQQLKVSMDVRSAMYNLEGRSNNRDYLSA-GKTILP 169 (434)
Q Consensus 117 ~~~~V~-~~g~Y~l~f~~C~~~~~~~~~~~v~~~n~n~~G~~~~yLsa-~~~plp 169 (434)
+.|.++ ++|.|++.... .+.+...-|+++.+.-.+.|.-++||-+ .|-.++
T Consensus 47 G~Ys~~~epG~Y~V~l~~--~g~~~~~vG~I~V~~dS~pGTLN~fL~~~~e~dl~ 99 (134)
T PF08400_consen 47 GEYSFDVEPGVYRVTLKV--EGRPPVYVGDITVYEDSKPGTLNDFLTAPDEDDLR 99 (134)
T ss_pred ceEEEEecCCeEEEEEEE--CCCCceeEEEEEEecCCCCCcHHHHhhccccccCC
Confidence 455554 69999998854 4455677799999988888878889965 344443
No 20
>PF13491 DUF4117: Domain of unknown function (DUF4117)
Probab=34.11 E-value=3.4e+02 Score=24.14 Aligned_cols=50 Identities=20% Similarity=0.263 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHH
Q 013899 170 RIYFLFSLIYFILAGLWIHVLYRKRLTVFRIHFFMLAVVVLKAVNLLCEA 219 (434)
Q Consensus 170 ~lY~~~~~~y~~l~~~W~~~~~k~r~~v~~Ih~~m~~li~l~~l~~~~~~ 219 (434)
...+..+.+..++.+.|.+.+.++|+...+...+...++.+-.+..+++.
T Consensus 60 ~~fG~~a~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l 109 (171)
T PF13491_consen 60 QLFGLGAYLLPLLLIVWGIRLFRRRSLRRRIRRWLGLLLLLLSLSGLLSL 109 (171)
T ss_pred hccchHHHHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888889988888877666667776666666666665543
No 21
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=31.68 E-value=4.1e+02 Score=25.52 Aligned_cols=66 Identities=12% Similarity=0.170 Sum_probs=37.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHh--hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 013899 166 TILPRIYFLFSLIYFILAGLWIHVLYR--KRLTVFRIHFFMLAVVVLKAVNLLCEAEDKSYIKRTGSA 231 (434)
Q Consensus 166 ~plp~lY~~~~~~y~~l~~~W~~~~~k--~r~~v~~Ih~~m~~li~l~~l~~~~~~~~y~~in~~G~~ 231 (434)
...-+++++...+++..-++-.+...+ +|+..-.+|..+-++.+...+-=+....++|..++.|.|
T Consensus 24 Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~ 91 (214)
T cd08764 24 FNWHPLLMVLGLIFLYGNSILVYRVFRNTRKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIP 91 (214)
T ss_pred EeecHHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 344566777776666666666665544 334455688777666655544444333344433333665
No 22
>PRK10263 DNA translocase FtsK; Provisional
Probab=28.82 E-value=3.1e+02 Score=33.36 Aligned_cols=40 Identities=10% Similarity=0.014 Sum_probs=18.5
Q ss_pred cCCCCCccccCccCccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 013899 152 EGRSNNRDYLSAGKTILPRIYFLFSLIYFILAGLWIHVLYRKR 194 (434)
Q Consensus 152 n~~G~~~~yLsa~~~plp~lY~~~~~~y~~l~~~W~~~~~k~r 194 (434)
|..|....||+. -+..++++++.+..+++++|.+.++++|
T Consensus 62 Nl~GiVGA~LAD---~L~~LFGl~AYLLP~LL~~~a~~l~R~r 101 (1355)
T PRK10263 62 NLGGMPGAWLAD---TLFFIFGVMAYTIPVIIVGGCWFAWRHQ 101 (1355)
T ss_pred cccchHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHhcc
Confidence 444623334433 2334555555555444444455545544
No 23
>COG2322 Predicted membrane protein [Function unknown]
Probab=27.28 E-value=4.7e+02 Score=24.27 Aligned_cols=127 Identities=23% Similarity=0.344 Sum_probs=60.8
Q ss_pred hhcCCc-hhHHH-HHHHHHHHHHHHHHHHHHHHhcccccceecccccch-hhhhhhHH-HHHHHHHHH----HhhcccCC
Q 013899 226 KRTGSA-HGWDV-LFYMFSFLKGITLFTLIVLIGTGWSFLKPYLQDKEK-KVLMIVIP-LQVVANIAQ----VVIDETGP 297 (434)
Q Consensus 226 n~~G~~-~~~~v-~~~I~~~~k~~l~f~lillIg~Gwg~vkp~L~~~~k-kv~~ivi~-l~vlania~----iv~~~~~~ 297 (434)
...|.+ .+|.+ ..-..++.-++++++++ -.||-.+|-. +++| |-.|+... +....-+-| ....|+.-
T Consensus 31 ~P~g~~~~~~~v~i~p~lnai~~~~s~~~l---lag~~~Ikrg--~i~~Hk~aMltA~~l~l~FlvlYltr~~l~~~t~f 105 (177)
T COG2322 31 SPAGPQADAFNVEILPMLNAIFNSLSFIFL---LAGWRLIKRG--NIEKHKRAMLTAFTLALVFLVLYLTRHGLGGETAF 105 (177)
T ss_pred CCCCCCCCccCchhhhhHHHHHHHHHHHHH---HHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 455532 34443 22345565666666654 4689888844 3333 44554433 222222222 22334322
Q ss_pred CCCcccchhhh--hhhhhHHHHHHHHHHHHH-----HHHHHHHHhhcchHHHHhHHHHHHHHHHHHHHHHHHHHhhheee
Q 013899 298 YGQDWITWKQV--FLLVDVVCCCAVLFPIVW-----SIKNLREAARTDGKAAVNLMKLTLFRQYYIVVICYIYFTRVVVY 370 (434)
Q Consensus 298 ~~~~~~~w~~i--~~lvd~~~~~aI~f~ivw-----si~~L~~~s~tdgka~~nl~KL~lfr~Fy~~lv~yiyft~iiv~ 370 (434)
+..+ ..+.+ +++.-=++..++.+|+.. ..+++ .+|.+.+-|+...+=.|+.+|.+++|
T Consensus 106 ~~~G--~~k~~Y~~iL~~Hi~LA~i~vPLal~al~~a~~~~-------------~~rHrki~r~ta~~Wlyva~tGv~VY 170 (177)
T COG2322 106 GGTG--IYKGIYFFILITHIILAAINVPLALYALILAWKGL-------------YERHRKIGRWTAPLWLYVALTGVVVY 170 (177)
T ss_pred CCCe--eeehHHHHHHHHHHHHHHHhhhHHHHHHHHHhcch-------------hhhhheeeehhhHHHHHHHHHHHHHh
Confidence 2222 22222 223333456666666433 33333 23445566666666666767777777
Q ss_pred eE
Q 013899 371 GL 372 (434)
Q Consensus 371 ~l 372 (434)
++
T Consensus 171 Lm 172 (177)
T COG2322 171 LM 172 (177)
T ss_pred he
Confidence 54
No 24
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=27.23 E-value=8.9e+02 Score=29.05 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=28.2
Q ss_pred cccHHHHHHHHHHHHHHHHhhhcccCCCCCCceeccCchhHHHHHhc
Q 013899 380 YLWTSVVAGELATLAFYVFTGYKFKPEAHNPYFVIDDEEEEAAAEAL 426 (434)
Q Consensus 380 ~~W~~~~~~e~~~l~ffv~i~~~fRP~~~n~yl~~~~~~~~~~~~~l 426 (434)
.+|+...++-+..++..+++-.++||....+. .+++||+..+.-+
T Consensus 201 ~~~~~~~~~~~~~~~l~~a~~~l~r~~~~~~~--~~~~d~~~~~~ll 245 (1094)
T PRK02983 201 PVWVNALLGLFGAAALIAALIVLFRSQRADNA--LTGEDELAIRGLL 245 (1094)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcC--CCchhHHHHHHHH
Confidence 35777777776667777777788999876654 3333444444333
No 25
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=26.92 E-value=71 Score=26.38 Aligned_cols=26 Identities=15% Similarity=0.479 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Q 013899 171 IYFLFSLIYFILAGLWIHVLYRKRLT 196 (434)
Q Consensus 171 lY~~~~~~y~~l~~~W~~~~~k~r~~ 196 (434)
-+++.+++|.++.+.|...|.|+|+.
T Consensus 36 ~~lvI~~iFil~VilwfvCC~kRkrs 61 (94)
T PF05393_consen 36 WFLVICGIFILLVILWFVCCKKRKRS 61 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 48889999999999999988776554
No 26
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=26.51 E-value=7e+02 Score=25.44 Aligned_cols=46 Identities=22% Similarity=0.293 Sum_probs=25.7
Q ss_pred hhhhhhhhhHHHHHHH----HHHHHHHHHHHHHHhhcchHHHHhHHHHHH
Q 013899 305 WKQVFLLVDVVCCCAV----LFPIVWSIKNLREAARTDGKAAVNLMKLTL 350 (434)
Q Consensus 305 w~~i~~lvd~~~~~aI----~f~ivwsi~~L~~~s~tdgka~~nl~KL~l 350 (434)
+...+.++++..+..+ +..-..++.++|...+++++.+..++|+.+
T Consensus 178 ~l~~fvl~Pl~i~l~iG~~fL~~G~~~l~rir~~~~~~~~~~~Kl~klm~ 227 (328)
T PF01534_consen 178 ALRGFVLAPLFIYLLIGTVFLLAGFVSLFRIRRSMKHDGTKTSKLEKLMI 227 (328)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcccccchhhHHHHHH
Confidence 4556777787654332 122233667777777777755544554443
No 27
>PF06396 AGTRAP: Angiotensin II, type I receptor-associated protein (AGTRAP); InterPro: IPR009436 This family consists of several angiotensin II, type I receptor-associated protein (AGTRAP) sequences. AGTRAP is known to interact specifically with the C-terminal cytoplasmic region of the angiotensin II type 1 (AT(1)) receptor to regulate different aspects of AT(1) receptor physiology. The function of this family is unclear.
Probab=25.65 E-value=2.6e+02 Score=25.68 Aligned_cols=81 Identities=10% Similarity=0.283 Sum_probs=46.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHH
Q 013899 168 LPRIYFLFSLIYFILAGLWIHVLYRKRLTVFRIHFFMLAVVVLKAVNLLCEAEDKSYIKRTGSAHGWDVLFYMFSFLKGI 247 (434)
Q Consensus 168 lp~lY~~~~~~y~~l~~~W~~~~~k~r~~v~~Ih~~m~~li~l~~l~~~~~~~~y~~in~~G~~~~~~v~~~I~~~~k~~ 247 (434)
+|.-|.+--+.+++ +.+|.. ..|.++-++|-++.+.++.-++-.+..+++|...+..+. ..|.....|++++-+=
T Consensus 28 ~p~sY~f~Nf~~l~-~gvWAi---~~~dSidav~~~l~~~~~sil~Dii~i~vyf~~~~~~~~-~~Fs~~maIinLllKP 102 (162)
T PF06396_consen 28 LPGSYLFYNFLFLA-LGVWAI---HQRDSIDAVQMALVGLVFSILFDIIHIGVYFPSMNLSDT-DRFSAGMAIINLLLKP 102 (162)
T ss_pred CCchhHHHHHHHHH-HHHHHH---hccCchHHHHHHHHHHHHHHHHHHheeEEeccccccccc-chhhHHHHHHHHHHHH
Confidence 35555555555444 345554 457788899988887776666666665655544332222 4566666666665444
Q ss_pred HHHHHH
Q 013899 248 TLFTLI 253 (434)
Q Consensus 248 l~f~li 253 (434)
++..++
T Consensus 103 ~s~~~l 108 (162)
T PF06396_consen 103 ISCFFL 108 (162)
T ss_pred HHHHHH
Confidence 444443
No 28
>PF12250 AftA_N: Arabinofuranosyltransferase N terminal; InterPro: IPR020963 The arabinofuranosyltransferase enzyme AftA is involved in cell wall arabinan biosynthesis in bacteria []. It catalyses the addition of the first key arabinofuranosyl residue from the sugar donor beta-D-arabinofuranosyl-1-monophosphoryldecaprenol to the galactan domain of the cell wall, thus priming the galactan for further elaboration by the arabinofuranosyltransferases. As this enzyme is important for cell growth and is found in some important pathogens, such as Mycobacterium tuberculosis, it represents a potential target for the devlopment of new antibacterial drugs. This entry represents the N-terminal domain of AftA, which is predicted to contain 11 transmembrane helices.; GO: 0016757 transferase activity, transferring glycosyl groups, 0044038 cell wall macromolecule biosynthetic process, 0005886 plasma membrane, 0016021 integral to membrane
Probab=25.50 E-value=1.5e+02 Score=31.27 Aligned_cols=41 Identities=20% Similarity=0.396 Sum_probs=33.2
Q ss_pred CCCccccCc--cCccchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013899 155 SNNRDYLSA--GKTILPRIYFLFSLIYFILAGLWIHVLYRKRL 195 (434)
Q Consensus 155 G~~~~yLsa--~~~plp~lY~~~~~~y~~l~~~W~~~~~k~r~ 195 (434)
|.-.+|||. .|.|+|.+-+....+-+..+.+|+..-.+++.
T Consensus 305 gtA~HYLP~~Ga~lp~Pm~~~sl~G~LcliGlvwlv~R~r~~~ 347 (429)
T PF12250_consen 305 GTAQHYLPEDGAELPLPMFQFSLLGALCLIGLVWLVVRFRSST 347 (429)
T ss_pred CcccccCCccCCcCccchHhHHHHHHHHHHHHHHHeeeecCch
Confidence 335679986 68999999999999999999999986655543
No 29
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=24.33 E-value=1.3e+02 Score=27.29 Aligned_cols=39 Identities=10% Similarity=0.183 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhhcchHHHHhHHHHHHHHH-HHHHHHHHH
Q 013899 324 IVWSIKNLREAARTDGKAAVNLMKLTLFRQ-YYIVVICYI 362 (434)
Q Consensus 324 ivwsi~~L~~~s~tdgka~~nl~KL~lfr~-Fy~~lv~yi 362 (434)
+.-.|..+...-+.|||.+-|..=++=-.- |-.|+++|+
T Consensus 8 L~~~id~iN~~E~RDnkprFs~~Fi~~HP~L~~~M~~~y~ 47 (155)
T PF10777_consen 8 LIEEIDRINREEKRDNKPRFSSSFIRNHPYLCLAMYAAYL 47 (155)
T ss_pred HHHHHHHHHHHhccCCCccccHHHHHhCcHHHHHHHHHHH
Confidence 344677776666789998777622111111 334666776
No 30
>PF06664 MIG-14_Wnt-bd: Wnt-binding factor required for Wnt secretion
Probab=24.25 E-value=7e+02 Score=24.64 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=16.4
Q ss_pred hccchhhHHHHHHHHHHHHHHHH
Q 013899 193 KRLTVFRIHFFMLAVVVLKAVNL 215 (434)
Q Consensus 193 ~r~~v~~Ih~~m~~li~l~~l~~ 215 (434)
++++-..-|+++.++..+..+-.
T Consensus 78 ~~~~w~~EQk~~~~Ll~~lil~n 100 (298)
T PF06664_consen 78 SRRDWLLEQKWTFALLILLILYN 100 (298)
T ss_pred CCCcchHHHHHHHHHHHHHHHHh
Confidence 35677777888888877666554
No 31
>PF03381 CDC50: LEM3 (ligand-effect modulator 3) family / CDC50 family; InterPro: IPR005045 Members of this family have no known function. They have predicted transmembrane helices.; GO: 0016020 membrane
Probab=23.53 E-value=3e+02 Score=27.36 Aligned_cols=74 Identities=19% Similarity=0.304 Sum_probs=46.3
Q ss_pred ceeEEEEec-----cCCcEEEEEEEecCCceeEEEEEEEEEEecCCCCCccccCccCccchhHHHHHHHHHHHHHHHHHH
Q 013899 114 EYSTIYSEN-----DADQYTLVFANCLQQLKVSMDVRSAMYNLEGRSNNRDYLSAGKTILPRIYFLFSLIYFILAGLWIH 188 (434)
Q Consensus 114 ~~~~~~~V~-----~~g~Y~l~f~~C~~~~~~~~~~~v~~~n~n~~G~~~~yLsa~~~plp~lY~~~~~~y~~l~~~W~~ 188 (434)
+|.+-|-+- .+|.|.+.+.|=-|. ..+.++=.+....+ + .+.+....|..+|+++.+++++++++-+.
T Consensus 193 ~FrKLYg~i~~~~L~~G~y~i~I~nnypv--~~f~G~K~ivlst~-s----~~Ggkn~~Lgi~ylvvg~i~~v~~i~~~~ 265 (278)
T PF03381_consen 193 TFRKLYGRIDNDDLPAGNYTIDITNNYPV--SSFGGKKSIVLSTT-S----WFGGKNYFLGIAYLVVGGICLVLAIIFLI 265 (278)
T ss_pred CeeEeEeeeccCCCCCceEEEEEEEeecc--cccCcEEEEEEEec-c----ccCccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 444545443 278888888764443 23333333333322 2 66677778899999999999998888777
Q ss_pred HHHhhc
Q 013899 189 VLYRKR 194 (434)
Q Consensus 189 ~~~k~r 194 (434)
..+++.
T Consensus 266 ~~~~~~ 271 (278)
T PF03381_consen 266 IHYFKP 271 (278)
T ss_pred HHHhCC
Confidence 655443
No 32
>PF06638 Strabismus: Strabismus protein; InterPro: IPR009539 This family consists of several strabismus (STB) or Van Gogh-like (VANGL) proteins 1 and 2. The exact function of this family is unknown. It is thought, however that STB1 gene and STB2 may be potent tumour suppressor gene candidates [].; GO: 0007275 multicellular organismal development, 0016021 integral to membrane
Probab=23.45 E-value=4e+02 Score=28.88 Aligned_cols=70 Identities=21% Similarity=0.241 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-c-hhHHHHHHHHHHHHHHHHHH
Q 013899 180 FILAGLWIHVLYRKRLTVFRIHFFMLAVVVLKAVNLLCEAEDKSYIKRTGS-A-HGWDVLFYMFSFLKGITLFT 251 (434)
Q Consensus 180 ~~l~~~W~~~~~k~r~~v~~Ih~~m~~li~l~~l~~~~~~~~y~~in~~G~-~-~~~~v~~~I~~~~k~~l~f~ 251 (434)
+++.+.|...+++.|.++-+|+.+=++++++.++-++.+|..|-. +..+. . +.-.|+.|-.++ -.+++|+
T Consensus 143 iLlig~WAlf~R~~~a~lPRif~fRa~ll~Lvfl~~~syWLFY~v-rIl~~~~~dy~~IV~yA~Sl-vDaLLFi 214 (505)
T PF06638_consen 143 ILLIGTWALFFRRPRADLPRIFVFRALLLVLVFLFLFSYWLFYGV-RILDPRESDYQGIVSYAVSL-VDALLFI 214 (505)
T ss_pred HHHHHHHHHhcCcccCCCchhHHHHHHHHHHHHHHHHHHHHHhhh-eeeechhhhHHHHHHHHHHH-HHHHHHH
Confidence 356677998888888899999999999999999988888887654 22222 1 223344443443 4455554
No 33
>PF08041 PetM: PetM family of cytochrome b6f complex subunit 7; InterPro: IPR012595 This family consists of the PetM family of cytochrome b6f complex subunit IV. The cytochrome b6f complex consists of 7 subunits and contains 2 beta haem's and 1 chlorophyll alpha per cytochrome f. It is highly active in transferring electrons from decylplastoquinol to oxidised plastocyanin [].; GO: 0009512 cytochrome b6f complex; PDB: 2ZT9_F 1Q90_M 2E76_F 2E75_F 2E74_F 2D2C_S 1VF5_S.
Probab=23.23 E-value=56 Score=21.71 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHhcccccceecc
Q 013899 244 LKGITLFTLIVLIGTGWSFLKPYL 267 (434)
Q Consensus 244 ~k~~l~f~lillIg~Gwg~vkp~L 267 (434)
+..+..++.+.++|.+||++--++
T Consensus 4 f~~a~i~~~lvlvGla~Gf~LLki 27 (31)
T PF08041_consen 4 FNIAVICFGLVLVGLALGFVLLKI 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhee
Confidence 345677888889999999864333
No 34
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=22.22 E-value=5e+02 Score=22.22 Aligned_cols=86 Identities=14% Similarity=0.293 Sum_probs=49.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHH
Q 013899 166 TILPRIYFLFSLIYFILAGLWIHVLYRKRLTVFRIHFFMLAVVVLKAVNLLCEAEDKSYIKRTGSAHGWDVLFYMFSFLK 245 (434)
Q Consensus 166 ~plp~lY~~~~~~y~~l~~~W~~~~~k~r~~v~~Ih~~m~~li~l~~l~~~~~~~~y~~in~~G~~~~~~v~~~I~~~~k 245 (434)
..-++-|.+-+++-.++.++=.+.... +..+-...+.+++.+..+..+.+..++-.+|.... ..|++...+|.+
T Consensus 12 hgs~k~yviGFiLSliLT~i~F~lv~~---~~~~~~~~~~~i~~lA~vQi~VqL~~FLHl~~~~~-~~wn~~al~Ft~-- 85 (109)
T PRK10582 12 HGSVKTYMTGFILSIILTVIPFWMVMT---GAASPAVILGTILAMAVVQILVHLVCFLHMNTKSD-EGWNMTAFVFTV-- 85 (109)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHH---ccCChhHHHHHHHHHHHHHHHHHHHHHhcccCCcc-cchHHHHHHHHH--
Confidence 445667765555555544433322221 13344455566667778888888887777775433 578887655543
Q ss_pred HHHHHHHHHHHhccc
Q 013899 246 GITLFTLIVLIGTGW 260 (434)
Q Consensus 246 ~~l~f~lillIg~Gw 260 (434)
..++++++|+=|
T Consensus 86 ---~i~~iiv~GSlW 97 (109)
T PRK10582 86 ---LIIAILVVGSIW 97 (109)
T ss_pred ---HHHHHHHHHHHH
Confidence 445555566544
No 35
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=22.03 E-value=90 Score=25.73 Aligned_cols=31 Identities=32% Similarity=0.403 Sum_probs=25.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 013899 166 TILPRIYFLFSLIYFILAGLWIHVLYRKRLT 196 (434)
Q Consensus 166 ~plp~lY~~~~~~y~~l~~~W~~~~~k~r~~ 196 (434)
.|-|.-|...++..++++++|+..++-..++
T Consensus 27 ~~sp~W~~p~m~~lmllGL~WiVvyYi~~~~ 57 (87)
T PF06781_consen 27 KPSPRWYAPLMLGLMLLGLLWIVVYYISGGQ 57 (87)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhhhhcccCC
Confidence 5789999999999999999999876554433
No 36
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=22.00 E-value=2.5e+02 Score=23.95 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=32.3
Q ss_pred chhhhhhhHHHHHHHHHHHHhhcccCCCCCcccchhhhhhhhhHHHHHHHH
Q 013899 271 EKKVLMIVIPLQVVANIAQVVIDETGPYGQDWITWKQVFLLVDVVCCCAVL 321 (434)
Q Consensus 271 ~kkv~~ivi~l~vlania~iv~~~~~~~~~~~~~w~~i~~lvd~~~~~aI~ 321 (434)
.++++.|++..+++..++|....-.+-.+.+-..|.+.++++-+ ++|+.
T Consensus 3 R~dvl~Iglgv~~~Gg~~Y~~l~~~G~d~~~AGi~sq~~lv~gl--vgW~~ 51 (104)
T PF11460_consen 3 RIDVLLIGLGVFLLGGLLYGGLQAAGLDSLSAGIWSQALLVLGL--VGWVS 51 (104)
T ss_pred ccceeeecHHHHHHHHHHHHHHHHcCCCchhhhHHHHHHHHHHH--HHHHh
Confidence 34567777888888888888777665555555678887554332 45553
No 37
>PRK15301 hypothetical protein; Provisional
Probab=21.92 E-value=59 Score=30.53 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=23.0
Q ss_pred ccccCCCCcEEEEEEeeeeecCCCCCCceEE
Q 013899 40 DEFGFTHRGRLELNVSKISLSNPDLDFSKVG 70 (434)
Q Consensus 40 ~~FGF~~gG~~~v~v~~~~~~~~~~~~~~~g 70 (434)
+.|+|.++|.+.|.++|..++. .+..+|
T Consensus 84 grf~fg~~G~~~vklsda~lDG---kpv~Lg 111 (186)
T PRK15301 84 GRFLFGNNGGLAVKVSQMILDG---KSYPIG 111 (186)
T ss_pred CcEEEcCCCcEEEEEhhhEECC---cEeeee
Confidence 5799999999999999999974 345555
Done!