Query 013899
Match_columns 434
No_of_seqs 174 out of 411
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 19:11:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013899.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013899hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fjk_A Cardiac phospholamban; 39.4 64 0.0022 22.2 5.0 33 329-363 10-44 (52)
2 3eff_K Voltage-gated potassium 20.6 2.9E+02 0.0099 22.6 7.3 21 246-266 43-63 (139)
3 1nqj_A Class 1 collagenase; be 15.6 3.6E+02 0.012 22.1 6.5 29 115-146 89-117 (119)
4 1vf5_F Protein PET M; photosyn 14.5 73 0.0025 20.8 1.4 25 244-268 6-30 (35)
5 3izc_W 60S ribosomal protein R 13.3 43 0.0015 28.0 0.1 12 411-422 107-118 (121)
6 4b4a_A TATC, SEC-independent p 13.3 3.3E+02 0.011 25.2 6.4 30 246-275 71-100 (249)
7 1q90_M Cytochrome B6F complex 11.2 1E+02 0.0035 20.6 1.4 24 244-267 7-30 (39)
8 4ea3_A Fusion protein of nocic 11.0 9.8E+02 0.033 22.6 18.9 38 325-362 310-347 (434)
9 3iz5_W 60S ribosomal protein L 10.0 64 0.0022 27.3 0.1 12 411-422 118-129 (130)
10 1xou_B Z5138 gene product; coi 9.4 2.2E+02 0.0077 21.7 3.0 23 326-348 36-58 (95)
No 1
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=39.38 E-value=64 Score=22.25 Aligned_cols=33 Identities=24% Similarity=0.459 Sum_probs=23.3
Q ss_pred HHHHHHhhc--chHHHHhHHHHHHHHHHHHHHHHHHH
Q 013899 329 KNLREAART--DGKAAVNLMKLTLFRQYYIVVICYIY 363 (434)
Q Consensus 329 ~~L~~~s~t--dgka~~nl~KL~lfr~Fy~~lv~yiy 363 (434)
..+|.+|.. ..+|++|++ .+|-+|..+++|-+.
T Consensus 10 sairras~ie~~~qarqnlq--elfvnfcliliclll 44 (52)
T 1fjk_A 10 SAIRRASTIEMPQQARQNLQ--NLFINFCLILIFLLL 44 (52)
T ss_dssp HHHHHHHSSSSHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 345666654 456788876 789999988887653
No 2
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=20.62 E-value=2.9e+02 Score=22.62 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhcccccceec
Q 013899 246 GITLFTLIVLIGTGWSFLKPY 266 (434)
Q Consensus 246 ~~l~f~lillIg~Gwg~vkp~ 266 (434)
.++-|..+-+-..|||=+.|.
T Consensus 43 ~a~yf~~~T~tTvGyGd~~P~ 63 (139)
T 3eff_K 43 RALWWSVETATTVGYGDLYPV 63 (139)
T ss_dssp HHHHHHHHHHTTCCCSSSCCC
T ss_pred HHHHHHheeeecccCCCCcCC
Confidence 456667777888999999885
No 3
>1nqj_A Class 1 collagenase; beta sandwich, metalloprotease, collagen-binding domain, lithium, chlorine, hydrolase; 1.00A {Clostridium histolyticum} SCOP: b.23.2.1 PDB: 2o8o_A 1nqd_A
Probab=15.62 E-value=3.6e+02 Score=22.14 Aligned_cols=29 Identities=14% Similarity=0.109 Sum_probs=18.8
Q ss_pred eeEEEEeccCCcEEEEEEEecCCceeEEEEEE
Q 013899 115 YSTIYSENDADQYTLVFANCLQQLKVSMDVRS 146 (434)
Q Consensus 115 ~~~~~~V~~~g~Y~l~f~~C~~~~~~~~~~~v 146 (434)
...+|.+. +|.|++.+..+ . ....+++.+
T Consensus 89 ~~~~~~~~-pGkYYl~Vy~y-~-~~g~Y~l~v 117 (119)
T 1nqj_A 89 VSNKVKLR-PGKYYLLVYKY-S-GSGNYELRV 117 (119)
T ss_dssp EEEEEEEC-SEEEEEEEEEE-E-SCEEEEEEE
T ss_pred EEEEEEcC-CcEEEEEEEEe-C-CCceEEEEE
Confidence 34566665 99999999887 2 234455443
No 4
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=14.49 E-value=73 Score=20.84 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhcccccceeccc
Q 013899 244 LKGITLFTLIVLIGTGWSFLKPYLQ 268 (434)
Q Consensus 244 ~k~~l~f~lillIg~Gwg~vkp~L~ 268 (434)
++.+.....+.++|..||++--.++
T Consensus 6 f~~A~i~~~LvLvGla~Gf~LLkiq 30 (35)
T 1vf5_F 6 LYAALLSFGLIFVGWGLGVLLLKIQ 30 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhheee
Confidence 4557777888889999888654443
No 5
>3izc_W 60S ribosomal protein RPL22 (L22E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_W 3u5e_U 3u5i_U 4b6a_U
Probab=13.33 E-value=43 Score=28.05 Aligned_cols=12 Identities=25% Similarity=0.684 Sum_probs=2.9
Q ss_pred ceeccCchhHHH
Q 013899 411 YFVIDDEEEEAA 422 (434)
Q Consensus 411 yl~~~~~~~~~~ 422 (434)
||.+.+||||++
T Consensus 107 yf~I~~de~eee 118 (121)
T 3izc_W 107 FYQVTPEEDEEE 118 (121)
T ss_dssp CCCC--------
T ss_pred EEeeCCCccccc
Confidence 677766655443
No 6
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=13.32 E-value=3.3e+02 Score=25.23 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcccccceecccccchhhh
Q 013899 246 GITLFTLIVLIGTGWSFLKPYLQDKEKKVL 275 (434)
Q Consensus 246 ~~l~f~lillIg~Gwg~vkp~L~~~~kkv~ 275 (434)
.++....=.++=.-|.+++|-|-++|||..
T Consensus 71 ~g~~~a~P~ilyQiw~Fi~PgLy~~Err~~ 100 (249)
T 4b4a_A 71 VGFIIASPVILYQFWRFIEPALYSHEKRAF 100 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSCCCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHhccccHhHHHHH
Confidence 445555666788999999999999999874
No 7
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=11.21 E-value=1e+02 Score=20.60 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhcccccceecc
Q 013899 244 LKGITLFTLIVLIGTGWSFLKPYL 267 (434)
Q Consensus 244 ~k~~l~f~lillIg~Gwg~vkp~L 267 (434)
++.+.....+.++|..||++--.+
T Consensus 7 f~~A~i~~~L~LvGla~Gf~LLki 30 (39)
T 1q90_M 7 AGTALTMVGMTLVGLAIGFVLLRV 30 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 355677778888888888865443
No 8
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=11.01 E-value=9.8e+02 Score=22.63 Aligned_cols=38 Identities=18% Similarity=0.229 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhhcchHHHHhHHHHHHHHHHHHHHHHHH
Q 013899 325 VWSIKNLREAARTDGKAAVNLMKLTLFRQYYIVVICYI 362 (434)
Q Consensus 325 vwsi~~L~~~s~tdgka~~nl~KL~lfr~Fy~~lv~yi 362 (434)
...++++|...+..+..+++..+.+..|....+++.++
T Consensus 310 ~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vv~~F~ 347 (434)
T 4ea3_A 310 SLMIRRLRGVRLLSGSREKDRNLRRITRLVLVVVAVFV 347 (434)
T ss_dssp HHHHHHHTTCSSCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccchhhHHHHhHHHHHHHHHHHHHH
Confidence 33456665433222222222233455555555544444
No 9
>3iz5_W 60S ribosomal protein L22 (L22E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_W
Probab=9.98 E-value=64 Score=27.31 Aligned_cols=12 Identities=42% Similarity=0.731 Sum_probs=2.5
Q ss_pred ceeccCchhHHH
Q 013899 411 YFVIDDEEEEAA 422 (434)
Q Consensus 411 yl~~~~~~~~~~ 422 (434)
||.+.+||||++
T Consensus 118 YfnI~~de~ee~ 129 (130)
T 3iz5_W 118 YFNIAENEGEEE 129 (130)
T ss_dssp CCCC--------
T ss_pred EEecCCCccccc
Confidence 566655555443
No 10
>1xou_B Z5138 gene product; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} SCOP: a.231.1.2
Probab=9.42 E-value=2.2e+02 Score=21.68 Aligned_cols=23 Identities=48% Similarity=0.502 Sum_probs=18.8
Q ss_pred HHHHHHHHHhhcchHHHHhHHHH
Q 013899 326 WSIKNLREAARTDGKAAVNLMKL 348 (434)
Q Consensus 326 wsi~~L~~~s~tdgka~~nl~KL 348 (434)
-+.+.|.|.++||++|+..+.||
T Consensus 36 e~v~~l~ekakt~pqaae~ln~l 58 (95)
T 1xou_B 36 ESVNELSEKAKTDPQAAEKLNKL 58 (95)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCHHHHHHHHHH
Confidence 37788899999999999777665
Done!