Query 013899
Match_columns 434
No_of_seqs 174 out of 411
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 19:11:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013899.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013899hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xoub_ a.231.1.2 (B:) EspA ch 10.8 90 0.0065 21.6 3.0 22 327-348 36-57 (84)
2 d1kxga_ b.22.1.1 (A:) Soluble 9.6 1.5E+02 0.011 22.9 4.6 27 117-143 42-68 (144)
3 d1xu1a_ b.22.1.1 (A:) A prolif 9.0 1.5E+02 0.011 22.7 4.2 21 117-137 40-60 (137)
4 d2gmqa1 b.122.1.11 (A:12-113) 6.5 67 0.0049 23.4 0.7 27 25-55 60-86 (102)
5 d1rj8a_ b.22.1.1 (A:) Ectodysp 6.0 1.2E+02 0.0084 23.6 2.0 20 117-136 44-63 (140)
6 d1vmba_ d.58.14.1 (A:) Ribosom 5.5 2E+02 0.015 20.8 3.2 25 113-137 46-72 (107)
7 d1wlha1 b.1.18.10 (A:547-647) 5.5 3E+02 0.022 19.0 4.2 22 112-133 64-85 (101)
8 d1x44a1 b.1.1.4 (A:8-97) Myosi 5.4 2.9E+02 0.021 18.4 3.9 6 123-128 68-73 (90)
9 d2tnfa_ b.22.1.1 (A:) Tumor ne 5.1 1.3E+02 0.0098 23.2 1.9 19 117-135 38-56 (148)
10 d1s55a1 b.22.1.1 (A:161-316) T 5.1 1.4E+02 0.01 23.2 2.1 19 117-135 43-61 (156)
No 1
>d1xoub_ a.231.1.2 (B:) EspA chaperone CesA {Escherichia coli [TaxId: 562]}
Probab=10.84 E-value=90 Score=21.62 Aligned_cols=22 Identities=50% Similarity=0.590 Sum_probs=18.3
Q ss_pred HHHHHHHHhhcchHHHHhHHHH
Q 013899 327 SIKNLREAARTDGKAAVNLMKL 348 (434)
Q Consensus 327 si~~L~~~s~tdgka~~nl~KL 348 (434)
+.+.|.+.++||++++..+.||
T Consensus 36 nvn~lsekaktdpqaaeklnkl 57 (84)
T d1xoub_ 36 SVNELSEKAKTDPQAAEKLNKL 57 (84)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHH
Confidence 6788888899999999777665
No 2
>d1kxga_ b.22.1.1 (A:) Soluble part of TALL-1, sTALL-1 (BAFF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.61 E-value=1.5e+02 Score=22.88 Aligned_cols=27 Identities=4% Similarity=-0.059 Sum_probs=19.8
Q ss_pred EEEEeccCCcEEEEEEEecCCceeEEE
Q 013899 117 TIYSENDADQYTLVFANCLQQLKVSMD 143 (434)
Q Consensus 117 ~~~~V~~~g~Y~l~f~~C~~~~~~~~~ 143 (434)
.+..|.++|.|++|-+.+-.+....+.
T Consensus 42 g~L~V~~~GlYfVYsQV~F~~~~~~ls 68 (144)
T d1kxga_ 42 NKILVKETGYFFIYGQVLYTDKTYAMG 68 (144)
T ss_dssp TEEEECSCEEEEEEEEEEECCCSSEEE
T ss_pred CEEEEccceEEEEEEEEEEeCCCcccc
Confidence 467889999999998888655433444
No 3
>d1xu1a_ b.22.1.1 (A:) A proliferation-inducing ligand, APRIL {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.02 E-value=1.5e+02 Score=22.70 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=16.6
Q ss_pred EEEEeccCCcEEEEEEEecCC
Q 013899 117 TIYSENDADQYTLVFANCLQQ 137 (434)
Q Consensus 117 ~~~~V~~~g~Y~l~f~~C~~~ 137 (434)
.+..|.++|+|++|-..|-.+
T Consensus 40 g~L~V~~~G~YyVYsQV~f~~ 60 (137)
T d1xu1a_ 40 DIVRVWDTGIYLLYSQVLFHD 60 (137)
T ss_dssp TEEEECSCEEEEEEEEEEEEC
T ss_pred CEEEEccceEEEEEEEEEEEC
Confidence 467788999999988887644
No 4
>d2gmqa1 b.122.1.11 (A:12-113) Uncharacterized protein PrgU {Enterococcus faecalis [TaxId: 1351]}
Probab=6.47 E-value=67 Score=23.36 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=17.0
Q ss_pred EEeeecCCCCCceeeccccCCCCcEEEEEEe
Q 013899 25 RFNEIRNDNRPIIPFDEFGFTHRGRLELNVS 55 (434)
Q Consensus 25 ~~~~~~~d~r~~i~i~~FGF~~gG~~~v~v~ 55 (434)
+.|+++-|+-+ +.|||.+.|+++|-+.
T Consensus 60 KsL~L~V~~E~----S~~~~~~~~~~~VP~F 86 (102)
T d2gmqa1 60 KSLALEVYPEK----SIYVKPNLGRINVPVF 86 (102)
T ss_dssp EEEEEEBCGGG----CEEECC---CCCEEEE
T ss_pred cEEEEEEcccc----ceeccccCceEeeEEE
Confidence 35667777644 4689999999988774
No 5
>d1rj8a_ b.22.1.1 (A:) Ectodysplasin A, Eda-a1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.95 E-value=1.2e+02 Score=23.62 Aligned_cols=20 Identities=5% Similarity=-0.195 Sum_probs=16.1
Q ss_pred EEEEeccCCcEEEEEEEecC
Q 013899 117 TIYSENDADQYTLVFANCLQ 136 (434)
Q Consensus 117 ~~~~V~~~g~Y~l~f~~C~~ 136 (434)
.+..|.++|.|++|-+.|-.
T Consensus 44 G~L~V~~~G~YyVYsQV~f~ 63 (140)
T d1rj8a_ 44 GELEVLVDGTYFIYSQVYYI 63 (140)
T ss_dssp CCEEECSCEEEEEEEEEEEE
T ss_pred CEEEEccCcEEEEEEEEEEC
Confidence 46778899999999888853
No 6
>d1vmba_ d.58.14.1 (A:) Ribosomal protein S6 {Thermotoga maritima [TaxId: 2336]}
Probab=5.50 E-value=2e+02 Score=20.85 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=20.2
Q ss_pred cceeEEEEecc--CCcEEEEEEEecCC
Q 013899 113 SEYSTIYSEND--ADQYTLVFANCLQQ 137 (434)
Q Consensus 113 ~~~~~~~~V~~--~g~Y~l~f~~C~~~ 137 (434)
|.-.-.|+|++ +|.|.++-..|+|+
T Consensus 46 G~r~LAY~I~k~~~G~Y~~~~f~~~~~ 72 (107)
T d1vmba_ 46 GMRKFAYEIKKFNEGDYTVIYFRCDGQ 72 (107)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEECSS
T ss_pred eeeccceEcCCCcEEEEEEEEEEECHH
Confidence 34456899975 99999999999876
No 7
>d1wlha1 b.1.18.10 (A:547-647) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}
Probab=5.47 E-value=3e+02 Score=18.96 Aligned_cols=22 Identities=14% Similarity=0.397 Sum_probs=17.4
Q ss_pred CcceeEEEEeccCCcEEEEEEE
Q 013899 112 KSEYSTIYSENDADQYTLVFAN 133 (434)
Q Consensus 112 ~~~~~~~~~V~~~g~Y~l~f~~ 133 (434)
++.|.-+|...+.|.|.+...-
T Consensus 64 dGty~v~y~p~~~G~y~i~V~~ 85 (101)
T d1wlha1 64 DGTYDVEFEPKEAGDYVINLTL 85 (101)
T ss_dssp SSEEEEEECCCSCSEEEEEEEE
T ss_pred CCeEEEEEEeCCCccEEEEEEE
Confidence 4678888888889999887754
No 8
>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.36 E-value=2.9e+02 Score=18.37 Aligned_cols=6 Identities=50% Similarity=0.988 Sum_probs=3.2
Q ss_pred cCCcEE
Q 013899 123 DADQYT 128 (434)
Q Consensus 123 ~~g~Y~ 128 (434)
+.|.|.
T Consensus 68 D~G~Y~ 73 (90)
T d1x44a1 68 DAAEYS 73 (90)
T ss_dssp TCSEEE
T ss_pred cCEEEE
Confidence 355555
No 9
>d2tnfa_ b.22.1.1 (A:) Tumor necrosis factor (TNF) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.14 E-value=1.3e+02 Score=23.22 Aligned_cols=19 Identities=5% Similarity=-0.081 Sum_probs=15.9
Q ss_pred EEEEeccCCcEEEEEEEec
Q 013899 117 TIYSENDADQYTLVFANCL 135 (434)
Q Consensus 117 ~~~~V~~~g~Y~l~f~~C~ 135 (434)
....|.++|.|++|-+.|-
T Consensus 38 g~L~V~~~G~YyVYsQv~f 56 (148)
T d2tnfa_ 38 NQLVVPADGLYLVYSQVLF 56 (148)
T ss_dssp TEEECSSSEEEEEEEEEEE
T ss_pred CEEEECCCeEEEEEEEEEE
Confidence 3678899999999988774
No 10
>d1s55a1 b.22.1.1 (A:161-316) TRANCE/RANKL cytokine {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.13 E-value=1.4e+02 Score=23.20 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=15.4
Q ss_pred EEEEeccCCcEEEEEEEec
Q 013899 117 TIYSENDADQYTLVFANCL 135 (434)
Q Consensus 117 ~~~~V~~~g~Y~l~f~~C~ 135 (434)
.+..|.++|.|++|-+.|-
T Consensus 43 G~L~V~~~G~Y~VYsQv~f 61 (156)
T d1s55a1 43 GKLRVNQDGFYYLYANICF 61 (156)
T ss_dssp TEEEECSCEEEEEEEEEEE
T ss_pred CEEEeccCeEEEEEEEEEE
Confidence 4678999999999877763
Done!