Query 013900
Match_columns 434
No_of_seqs 324 out of 2102
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 19:12:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013900.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013900hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ea5_A Cell growth regulator w 99.0 1.2E-10 4.2E-15 91.0 4.7 53 382-434 10-64 (68)
2 4ic3_A E3 ubiquitin-protein li 99.0 1.2E-10 3.9E-15 92.1 2.8 50 384-433 21-72 (74)
3 2ecg_A Baculoviral IAP repeat- 98.9 3.8E-10 1.3E-14 89.2 3.1 50 384-433 22-73 (75)
4 2yho_A E3 ubiquitin-protein li 98.9 6.7E-10 2.3E-14 89.2 2.5 49 385-433 16-66 (79)
5 2d8t_A Dactylidin, ring finger 98.8 1.5E-09 5E-14 84.5 3.5 46 384-429 12-62 (71)
6 2ysl_A Tripartite motif-contai 98.8 2.1E-09 7.1E-14 83.4 3.9 47 383-429 16-70 (73)
7 2djb_A Polycomb group ring fin 98.8 2.7E-09 9.3E-14 83.2 3.5 49 383-431 11-65 (72)
8 2ea6_A Ring finger protein 4; 98.8 1.9E-09 6.6E-14 82.3 2.2 47 383-429 11-69 (69)
9 2egp_A Tripartite motif-contai 98.7 7.2E-09 2.5E-13 81.5 4.9 46 383-428 8-65 (79)
10 2yur_A Retinoblastoma-binding 98.7 4.6E-09 1.6E-13 82.5 3.4 47 383-429 11-65 (74)
11 1e4u_A Transcriptional repress 98.7 6E-09 2E-13 83.6 3.9 51 383-433 7-67 (78)
12 2ecw_A Tripartite motif-contai 98.7 9.6E-09 3.3E-13 81.3 4.9 47 383-429 15-72 (85)
13 2ecy_A TNF receptor-associated 98.7 5.2E-09 1.8E-13 80.1 3.2 47 383-429 11-63 (66)
14 2csy_A Zinc finger protein 183 98.7 5.6E-09 1.9E-13 83.1 3.3 45 383-427 11-60 (81)
15 2vje_B MDM4 protein; proto-onc 98.7 9.8E-10 3.3E-14 84.4 -1.2 48 386-433 6-61 (63)
16 2vje_A E3 ubiquitin-protein li 98.7 8E-10 2.7E-14 85.1 -1.7 49 385-433 6-62 (64)
17 2ecn_A Ring finger protein 141 98.7 3.4E-09 1.2E-13 81.8 1.8 50 384-433 12-65 (70)
18 2ecv_A Tripartite motif-contai 98.7 1.5E-08 5.2E-13 80.1 5.0 46 383-428 15-71 (85)
19 1bor_A Transcription factor PM 98.7 1.1E-08 3.8E-13 76.4 3.8 45 385-429 4-50 (56)
20 3ztg_A E3 ubiquitin-protein li 98.7 7.1E-09 2.4E-13 84.2 3.0 45 383-427 9-61 (92)
21 4ayc_A E3 ubiquitin-protein li 98.7 2.9E-09 9.8E-14 93.5 0.6 45 385-429 51-100 (138)
22 3l11_A E3 ubiquitin-protein li 98.7 5.6E-09 1.9E-13 88.4 2.1 46 383-428 11-62 (115)
23 2ect_A Ring finger protein 126 98.7 8.4E-09 2.9E-13 81.2 2.9 47 383-429 11-65 (78)
24 3t6p_A Baculoviral IAP repeat- 98.6 6.2E-09 2.1E-13 105.1 2.3 50 384-433 292-343 (345)
25 1t1h_A Gspef-atpub14, armadill 98.6 7.4E-09 2.5E-13 81.6 2.0 45 384-428 5-55 (78)
26 3ng2_A RNF4, snurf, ring finge 98.6 6E-09 2E-13 80.3 1.2 46 384-429 7-64 (71)
27 1chc_A Equine herpes virus-1 r 98.6 9E-09 3.1E-13 78.9 1.8 48 385-432 3-56 (68)
28 3fl2_A E3 ubiquitin-protein li 98.6 8.4E-09 2.9E-13 88.6 0.5 44 385-428 50-99 (124)
29 2ep4_A Ring finger protein 24; 98.6 2.4E-08 8.3E-13 77.8 3.0 49 383-431 11-67 (74)
30 3lrq_A E3 ubiquitin-protein li 98.5 1E-08 3.6E-13 85.2 0.4 46 383-428 18-70 (100)
31 2kiz_A E3 ubiquitin-protein li 98.5 3.7E-08 1.3E-12 75.7 3.4 49 384-432 11-67 (69)
32 2ecj_A Tripartite motif-contai 98.5 4.5E-08 1.5E-12 72.4 3.7 40 383-422 11-58 (58)
33 2ct2_A Tripartite motif protei 98.5 3.5E-08 1.2E-12 78.9 3.2 46 383-428 11-68 (88)
34 2xeu_A Ring finger protein 4; 98.5 1.5E-08 5.2E-13 76.2 0.8 48 386-433 2-63 (64)
35 2ysj_A Tripartite motif-contai 98.5 3.5E-08 1.2E-12 74.7 2.6 40 383-422 16-63 (63)
36 2ckl_A Polycomb group ring fin 98.5 2.6E-08 9E-13 83.5 1.4 46 384-429 12-63 (108)
37 1wgm_A Ubiquitin conjugation f 98.5 7E-08 2.4E-12 80.5 3.9 46 384-429 19-70 (98)
38 1g25_A CDK-activating kinase a 98.5 2.7E-08 9.1E-13 75.9 1.1 44 386-429 2-56 (65)
39 1iym_A EL5; ring-H2 finger, ub 98.5 5.9E-08 2E-12 71.2 2.8 43 385-427 3-54 (55)
40 1jm7_B BARD1, BRCA1-associated 98.5 5E-08 1.7E-12 83.1 2.6 45 384-428 19-67 (117)
41 2kr4_A Ubiquitin conjugation f 98.5 4.2E-08 1.4E-12 79.6 2.0 46 384-429 11-61 (85)
42 1z6u_A NP95-like ring finger p 98.5 2.6E-08 9E-13 89.1 0.6 45 385-429 76-126 (150)
43 2l0b_A E3 ubiquitin-protein li 98.4 4.7E-08 1.6E-12 79.9 1.8 46 384-429 37-90 (91)
44 1jm7_A BRCA1, breast cancer ty 98.4 4.8E-08 1.7E-12 81.7 1.7 45 385-429 19-71 (112)
45 2y43_A E3 ubiquitin-protein li 98.4 3.3E-08 1.1E-12 81.5 0.5 45 384-428 19-69 (99)
46 2kre_A Ubiquitin conjugation f 98.4 5.4E-08 1.9E-12 81.5 1.7 46 384-429 26-76 (100)
47 1x4j_A Ring finger protein 38; 98.4 5E-08 1.7E-12 76.4 1.2 46 384-429 20-73 (75)
48 2ecm_A Ring finger and CHY zin 98.4 8.2E-08 2.8E-12 70.3 1.9 42 386-427 4-54 (55)
49 3hct_A TNF receptor-associated 98.4 7.3E-08 2.5E-12 82.2 1.6 47 383-429 14-66 (118)
50 2ckl_B Ubiquitin ligase protei 98.4 4.2E-08 1.4E-12 88.2 -0.0 45 384-428 51-102 (165)
51 2c2l_A CHIP, carboxy terminus 98.4 1E-07 3.4E-12 91.1 2.1 44 386-429 207-256 (281)
52 1v87_A Deltex protein 2; ring- 98.3 1E-07 3.4E-12 80.3 0.8 43 387-429 25-95 (114)
53 2y1n_A E3 ubiquitin-protein li 98.3 3.2E-07 1.1E-11 93.9 3.6 46 386-431 331-382 (389)
54 3knv_A TNF receptor-associated 98.3 5.5E-08 1.9E-12 86.2 -1.9 44 383-426 27-76 (141)
55 1rmd_A RAG1; V(D)J recombinati 98.3 1.4E-07 4.6E-12 80.0 0.5 46 384-429 20-71 (116)
56 4hqf_A Thrombospondin-related 98.2 1.4E-05 4.8E-10 76.9 13.2 152 103-289 20-179 (281)
57 4hqo_A Sporozoite surface prot 98.2 1.6E-05 5.3E-10 76.3 12.6 151 104-289 18-176 (266)
58 2yu4_A E3 SUMO-protein ligase 98.2 5.5E-07 1.9E-11 74.1 1.9 43 385-427 5-62 (94)
59 4ap4_A E3 ubiquitin ligase RNF 98.1 4.2E-07 1.4E-11 77.4 0.8 45 385-429 5-61 (133)
60 2f42_A STIP1 homology and U-bo 98.1 6.4E-07 2.2E-11 82.7 1.4 44 386-429 105-154 (179)
61 3hcs_A TNF receptor-associated 98.1 8.1E-07 2.8E-11 80.0 1.4 47 383-429 14-66 (170)
62 4ap4_A E3 ubiquitin ligase RNF 98.0 8.2E-07 2.8E-11 75.6 0.5 49 385-433 70-132 (133)
63 2ecl_A Ring-box protein 2; RNF 98.0 1.5E-06 5.2E-11 69.5 1.5 43 386-428 14-76 (81)
64 1shu_X Anthrax toxin receptor 98.0 4.1E-05 1.4E-09 67.7 10.3 147 105-289 7-155 (182)
65 3n2n_F Anthrax toxin receptor 97.9 7.7E-05 2.6E-09 66.1 11.2 148 104-289 7-158 (185)
66 3ibs_A Conserved hypothetical 97.9 5.4E-05 1.8E-09 69.0 9.5 140 104-279 11-150 (218)
67 3htk_C E3 SUMO-protein ligase 97.8 3.4E-06 1.2E-10 82.1 0.8 45 384-428 178-232 (267)
68 2xgg_A Microneme protein 2; A/ 97.8 0.00034 1.2E-08 62.5 13.0 138 104-279 17-162 (178)
69 4fx5_A VON willebrand factor t 97.7 0.00013 4.4E-09 76.1 11.4 155 103-289 76-231 (464)
70 1q0p_A Complement factor B; VO 97.7 8.8E-05 3E-09 67.6 8.8 158 103-289 14-191 (223)
71 2d8s_A Cellular modulator of i 97.7 1.8E-05 6E-10 63.7 3.5 48 384-431 12-73 (80)
72 3dpl_R Ring-box protein 1; ubi 97.7 1.1E-05 3.7E-10 68.3 1.5 42 386-427 36-100 (106)
73 4b4t_W RPN10, 26S proteasome r 97.6 0.00039 1.3E-08 67.9 11.7 161 107-304 6-174 (268)
74 2b2x_A Integrin alpha-1; compu 97.6 0.0006 2E-08 62.9 12.3 133 104-279 22-164 (223)
75 1n3y_A Integrin alpha-X; alpha 97.6 6.5E-05 2.2E-09 67.4 5.5 144 105-289 10-166 (198)
76 1pt6_A Integrin alpha-1; cell 97.6 0.00055 1.9E-08 62.6 11.7 133 104-279 7-149 (213)
77 1atz_A VON willebrand factor; 97.6 0.00024 8.2E-09 63.7 9.1 143 104-288 5-156 (189)
78 1wim_A KIAA0161 protein; ring 97.6 1.3E-05 4.5E-10 65.4 0.6 40 386-425 4-61 (94)
79 1ijb_A VON willebrand factor; 97.6 0.00019 6.6E-09 65.4 8.4 145 105-288 14-167 (202)
80 4a0k_B E3 ubiquitin-protein li 97.5 1.5E-05 5E-10 68.8 0.2 42 386-427 47-111 (117)
81 2odp_A Complement C2; C3/C5 co 97.4 0.00044 1.5E-08 71.4 10.4 156 103-290 8-186 (509)
82 2x5n_A SPRPN10, 26S proteasome 97.4 0.0016 5.5E-08 60.0 12.7 163 106-307 4-173 (192)
83 1v7p_C Integrin alpha-2; snake 97.4 0.0016 5.3E-08 59.0 11.8 131 105-278 7-147 (200)
84 2x31_A Magnesium-chelatase 60 97.3 4E-05 1.4E-09 68.6 0.2 150 105-289 6-162 (189)
85 1mf7_A Integrin alpha M; cell 97.3 0.00018 6.1E-09 64.7 4.4 144 105-289 6-162 (194)
86 2bay_A PRE-mRNA splicing facto 97.2 7E-05 2.4E-09 57.1 1.0 43 387-429 3-51 (61)
87 1rrk_A Complement factor B; BB 97.1 0.0016 5.5E-08 66.8 10.6 153 105-289 2-177 (497)
88 3hrz_D Complement factor B; se 97.0 0.0023 8E-08 68.9 10.4 150 104-289 243-419 (741)
89 3vk6_A E3 ubiquitin-protein li 96.8 0.00054 1.8E-08 57.4 2.6 41 389-429 3-50 (101)
90 3zqk_A VON willebrand factor; 96.6 0.002 6.7E-08 58.6 4.9 138 105-289 22-169 (199)
91 2ct0_A Non-SMC element 1 homol 96.3 0.0019 6.6E-08 51.2 2.5 46 385-430 13-66 (74)
92 1jey_A KU70; double-strand DNA 96.2 0.033 1.1E-06 59.8 12.7 153 106-282 37-212 (609)
93 3k6s_A Integrin alpha-X; cell 96.0 0.0086 2.9E-07 68.6 7.4 142 105-289 131-287 (1095)
94 1mjn_A Integrin alpha-L; rossm 95.8 0.05 1.7E-06 48.2 10.0 130 105-280 3-138 (179)
95 3k1l_B Fancl; UBC, ring, RWD, 95.7 0.0024 8.1E-08 64.5 0.8 44 386-429 307-374 (381)
96 1jey_B KU80; double-strand DNA 95.3 0.067 2.3E-06 56.8 10.7 146 105-279 8-170 (565)
97 1vyx_A ORF K3, K3RING; zinc-bi 95.2 0.0086 3E-07 45.3 2.3 44 385-428 4-59 (60)
98 1yvr_A RO autoantigen, 60-kDa 94.4 0.28 9.5E-06 51.6 12.2 139 105-282 369-507 (538)
99 2ko5_A Ring finger protein Z; 93.1 0.039 1.3E-06 45.7 2.2 50 383-432 24-77 (99)
100 2nvo_A RO sixty-related protei 93.0 0.64 2.2E-05 49.0 11.9 139 105-280 363-501 (535)
101 2jun_A Midline-1; B-BOX, TRIM, 89.9 0.1 3.5E-06 42.4 1.4 30 386-415 2-35 (101)
102 3nw0_A Non-structural maintena 78.7 0.8 2.7E-05 43.6 2.0 43 387-429 180-230 (238)
103 2cs3_A Protein C14ORF4, MY039 72.3 2 6.8E-05 34.6 2.4 31 384-414 12-47 (93)
104 3rag_A Uncharacterized protein 69.1 3.2 0.00011 39.7 3.5 42 227-280 9-50 (242)
105 2iue_A Pactolus I-domain; memb 64.3 18 0.00063 33.6 7.7 108 105-241 4-118 (212)
106 2ww8_A RRGA, cell WALL surface 63.3 32 0.0011 38.6 10.7 40 202-241 351-392 (893)
107 1z60_A TFIIH basal transcripti 37.9 20 0.00069 26.9 2.6 35 388-422 16-58 (59)
108 3i2d_A E3 SUMO-protein ligase 37.5 18 0.00062 36.6 3.0 41 387-427 249-299 (371)
109 1wd2_A Ariadne-1 protein homol 34.4 15 0.0005 27.5 1.4 30 387-416 6-44 (60)
110 4fo9_A E3 SUMO-protein ligase 32.6 25 0.00084 35.5 3.1 41 387-427 215-265 (360)
111 2fiy_A Protein FDHE homolog; F 29.2 14 0.00048 36.4 0.6 41 385-425 180-231 (309)
112 2zet_C Melanophilin; complex, 28.0 8.1 0.00028 34.3 -1.2 38 387-424 68-116 (153)
113 1y02_A CARP2, FYVE-ring finger 27.6 21 0.00073 30.4 1.4 38 386-423 18-64 (120)
114 3zyq_A Hepatocyte growth facto 27.5 33 0.0011 31.8 2.9 29 386-414 163-196 (226)
115 1weo_A Cellulose synthase, cat 27.3 57 0.0019 26.6 3.8 41 387-427 16-69 (93)
116 2k16_A Transcription initiatio 25.8 24 0.0008 26.9 1.2 44 386-429 17-72 (75)
117 3rag_A Uncharacterized protein 25.2 1.8E+02 0.0062 27.5 7.5 92 105-223 135-227 (242)
118 2a20_A Regulating synaptic mem 24.1 5.7 0.0002 30.1 -2.5 29 384-414 6-41 (62)
119 3m62_A Ubiquitin conjugation f 23.1 25 0.00087 39.7 1.3 45 385-429 889-939 (968)
120 2e6r_A Jumonji/ARID domain-con 23.1 37 0.0013 27.2 2.0 42 384-425 13-66 (92)
121 2jmo_A Parkin; IBR, E3 ligase, 23.0 30 0.001 27.0 1.3 22 403-425 55-76 (80)
122 2d8v_A Zinc finger FYVE domain 21.8 29 0.001 26.7 1.0 30 385-414 6-36 (67)
123 3mpx_A FYVE, rhogef and PH dom 21.7 19 0.00066 35.9 0.0 40 387-426 375-430 (434)
124 3fcs_B Integrin beta-3; beta p 21.5 1.4E+02 0.0048 32.4 6.7 49 192-240 200-255 (690)
125 1dvp_A HRS, hepatocyte growth 21.1 42 0.0014 30.8 2.1 29 386-414 160-193 (220)
No 1
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.2e-10 Score=91.02 Aligned_cols=53 Identities=25% Similarity=0.622 Sum_probs=47.2
Q ss_pred cccCCCCccCccccCCcc-ceecCCCC-CchhhhcCCCCCCCcCcccccccccCC
Q 013900 382 ATALVEPVCPICLTNPKD-MAFGCGHT-TCKDCGTTISSCPMCREPITTRLRLYT 434 (434)
Q Consensus 382 p~~~e~~~CpICl~~~kd-v~l~CGH~-fC~~Ci~~l~~CPlCR~~i~~~i~ly~ 434 (434)
+...+...|+||++.+++ +.++|||. ||..|+.....||+||.+|..++++|.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~~ 64 (68)
T 2ea5_A 10 PSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALSG 64 (68)
T ss_dssp CSCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEECCCS
T ss_pred ccCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEEeec
Confidence 344567899999999999 56699999 999999999999999999999999984
No 2
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.00 E-value=1.2e-10 Score=92.15 Aligned_cols=50 Identities=34% Similarity=0.822 Sum_probs=46.0
Q ss_pred cCCCCccCccccCCcc-ceecCCCC-CchhhhcCCCCCCCcCcccccccccC
Q 013900 384 ALVEPVCPICLTNPKD-MAFGCGHT-TCKDCGTTISSCPMCREPITTRLRLY 433 (434)
Q Consensus 384 ~~e~~~CpICl~~~kd-v~l~CGH~-fC~~Ci~~l~~CPlCR~~i~~~i~ly 433 (434)
.+++..|+||++.+++ +.++|||. ||..|+..+..||+||.++..++++|
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~ 72 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIL 72 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEEEECB
T ss_pred CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCcEEEe
Confidence 4566899999999999 77799999 99999999999999999999999887
No 3
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=3.8e-10 Score=89.15 Aligned_cols=50 Identities=34% Similarity=0.856 Sum_probs=45.6
Q ss_pred cCCCCccCccccCCcc-ceecCCCC-CchhhhcCCCCCCCcCcccccccccC
Q 013900 384 ALVEPVCPICLTNPKD-MAFGCGHT-TCKDCGTTISSCPMCREPITTRLRLY 433 (434)
Q Consensus 384 ~~e~~~CpICl~~~kd-v~l~CGH~-fC~~Ci~~l~~CPlCR~~i~~~i~ly 433 (434)
.+++..|+||++.+++ +.++|||. ||..|+.....||+||.++..++++|
T Consensus 22 ~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~ 73 (75)
T 2ecg_A 22 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIF 73 (75)
T ss_dssp HHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCCCBCC
T ss_pred CCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCcEEEe
Confidence 3456789999999999 66799999 99999999999999999999999987
No 4
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.86 E-value=6.7e-10 Score=89.18 Aligned_cols=49 Identities=29% Similarity=0.784 Sum_probs=44.8
Q ss_pred CCCCccCccccCCcc-ceecCCCC-CchhhhcCCCCCCCcCcccccccccC
Q 013900 385 LVEPVCPICLTNPKD-MAFGCGHT-TCKDCGTTISSCPMCREPITTRLRLY 433 (434)
Q Consensus 385 ~e~~~CpICl~~~kd-v~l~CGH~-fC~~Ci~~l~~CPlCR~~i~~~i~ly 433 (434)
+++..|+||++.+++ +.++|||. ||..|+..+..||+||.++...+++|
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~ 66 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVY 66 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEEEECB
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCeEEEE
Confidence 456799999999999 66799999 99999999999999999999998887
No 5
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=1.5e-09 Score=84.48 Aligned_cols=46 Identities=30% Similarity=0.732 Sum_probs=39.9
Q ss_pred cCCCCccCccccCCcc-ceecCCCCCchhhhcCC----CCCCCcCcccccc
Q 013900 384 ALVEPVCPICLTNPKD-MAFGCGHTTCKDCGTTI----SSCPMCREPITTR 429 (434)
Q Consensus 384 ~~e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~l----~~CPlCR~~i~~~ 429 (434)
..++..|+||++.+++ +.++|||.||..|+..| ..||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 4567899999999999 88899999999999866 5799999998753
No 6
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=2.1e-09 Score=83.45 Aligned_cols=47 Identities=34% Similarity=0.864 Sum_probs=40.1
Q ss_pred ccCCCCccCccccCCcc-ceecCCCCCchhhhcCC-------CCCCCcCcccccc
Q 013900 383 TALVEPVCPICLTNPKD-MAFGCGHTTCKDCGTTI-------SSCPMCREPITTR 429 (434)
Q Consensus 383 ~~~e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~l-------~~CPlCR~~i~~~ 429 (434)
...+...|+||++.+.+ +.++|||.||..|+..+ ..||+||.++...
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 35677899999999999 77899999999998754 3799999998654
No 7
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=2.7e-09 Score=83.18 Aligned_cols=49 Identities=27% Similarity=0.507 Sum_probs=41.6
Q ss_pred ccCCCCccCccccCCcc-cee-cCCCCCchhhhcCC----CCCCCcCcccccccc
Q 013900 383 TALVEPVCPICLTNPKD-MAF-GCGHTTCKDCGTTI----SSCPMCREPITTRLR 431 (434)
Q Consensus 383 ~~~e~~~CpICl~~~kd-v~l-~CGH~fC~~Ci~~l----~~CPlCR~~i~~~i~ 431 (434)
..++...|+||++.+.+ +.+ +|||.||..|+..| ..||+||..+.....
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQP 65 (72)
T ss_dssp CCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCS
T ss_pred hcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccc
Confidence 45677899999999998 666 99999999999765 689999999977543
No 8
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=1.9e-09 Score=82.35 Aligned_cols=47 Identities=30% Similarity=0.802 Sum_probs=38.9
Q ss_pred ccCCCCccCccccCCcc--------ceecCCCCCchhhhcCC----CCCCCcCcccccc
Q 013900 383 TALVEPVCPICLTNPKD--------MAFGCGHTTCKDCGTTI----SSCPMCREPITTR 429 (434)
Q Consensus 383 ~~~e~~~CpICl~~~kd--------v~l~CGH~fC~~Ci~~l----~~CPlCR~~i~~~ 429 (434)
...+...|+||++.+.+ +.++|||.||..|+..| ..||+||.++..+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~r 69 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 69 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCcC
Confidence 45677899999998765 45699999999999865 6899999998753
No 9
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.75 E-value=7.2e-09 Score=81.45 Aligned_cols=46 Identities=37% Similarity=0.860 Sum_probs=39.8
Q ss_pred ccCCCCccCccccCCcc-ceecCCCCCchhhhcCC-----------CCCCCcCccccc
Q 013900 383 TALVEPVCPICLTNPKD-MAFGCGHTTCKDCGTTI-----------SSCPMCREPITT 428 (434)
Q Consensus 383 ~~~e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~l-----------~~CPlCR~~i~~ 428 (434)
..+++..|+||++.+.+ +.++|||.||..|+..+ ..||+||.++..
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 35678899999999999 78899999999999853 479999999865
No 10
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.73 E-value=4.6e-09 Score=82.52 Aligned_cols=47 Identities=28% Similarity=0.653 Sum_probs=39.8
Q ss_pred ccCCCCccCccccCCcc-ceec-CCCCCchhhhcCC------CCCCCcCcccccc
Q 013900 383 TALVEPVCPICLTNPKD-MAFG-CGHTTCKDCGTTI------SSCPMCREPITTR 429 (434)
Q Consensus 383 ~~~e~~~CpICl~~~kd-v~l~-CGH~fC~~Ci~~l------~~CPlCR~~i~~~ 429 (434)
...++..|+||++.+.+ +.++ |||.||..|+..+ ..||+||.++...
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred cCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 35677899999999999 8888 9999999998754 4899999986543
No 11
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.72 E-value=6e-09 Score=83.65 Aligned_cols=51 Identities=31% Similarity=0.741 Sum_probs=39.7
Q ss_pred ccCCCCccCccccCCc--c-ceec--CCCCCchhhhcCC-----CCCCCcCcccccccccC
Q 013900 383 TALVEPVCPICLTNPK--D-MAFG--CGHTTCKDCGTTI-----SSCPMCREPITTRLRLY 433 (434)
Q Consensus 383 ~~~e~~~CpICl~~~k--d-v~l~--CGH~fC~~Ci~~l-----~~CPlCR~~i~~~i~ly 433 (434)
..+++..||||++.+. + ..++ |||.||..|+.++ ..||+||+++..+..+|
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~ 67 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVY 67 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCC
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhh
Confidence 3567899999999774 3 3334 9999999998754 47999999998765444
No 12
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.72 E-value=9.6e-09 Score=81.29 Aligned_cols=47 Identities=36% Similarity=0.803 Sum_probs=40.2
Q ss_pred ccCCCCccCccccCCcc-ceecCCCCCchhhhcC----------CCCCCCcCcccccc
Q 013900 383 TALVEPVCPICLTNPKD-MAFGCGHTTCKDCGTT----------ISSCPMCREPITTR 429 (434)
Q Consensus 383 ~~~e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~----------l~~CPlCR~~i~~~ 429 (434)
...++..|+||++.+.+ +.++|||.||..|+.. ...||+||..+...
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred hCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 35678899999999998 8789999999999864 46899999998753
No 13
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=5.2e-09 Score=80.11 Aligned_cols=47 Identities=26% Similarity=0.555 Sum_probs=40.0
Q ss_pred ccCCCCccCccccCCcc-ceecCCCCCchhhhcCC-----CCCCCcCcccccc
Q 013900 383 TALVEPVCPICLTNPKD-MAFGCGHTTCKDCGTTI-----SSCPMCREPITTR 429 (434)
Q Consensus 383 ~~~e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~l-----~~CPlCR~~i~~~ 429 (434)
...++..|+||++.+++ +.++|||.||..|+..+ ..||+||.++...
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 34667899999999998 77899999999998743 5799999998754
No 14
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=5.6e-09 Score=83.07 Aligned_cols=45 Identities=22% Similarity=0.569 Sum_probs=39.1
Q ss_pred ccCCCCccCccccCCcc-ceecCCCCCchhhhcCC----CCCCCcCcccc
Q 013900 383 TALVEPVCPICLTNPKD-MAFGCGHTTCKDCGTTI----SSCPMCREPIT 427 (434)
Q Consensus 383 ~~~e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~l----~~CPlCR~~i~ 427 (434)
..++...|+||++.+.+ +.++|||.||..|+..+ ..||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 34567899999999999 77899999999999765 57999999976
No 15
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.71 E-value=9.8e-10 Score=84.39 Aligned_cols=48 Identities=29% Similarity=0.837 Sum_probs=42.1
Q ss_pred CCCccCccccCCcc-cee--cCCCC-CchhhhcCCC----CCCCcCcccccccccC
Q 013900 386 VEPVCPICLTNPKD-MAF--GCGHT-TCKDCGTTIS----SCPMCREPITTRLRLY 433 (434)
Q Consensus 386 e~~~CpICl~~~kd-v~l--~CGH~-fC~~Ci~~l~----~CPlCR~~i~~~i~ly 433 (434)
....|+||++.+++ +.+ +|||. +|..|+..+. .||+||+++...+++|
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~ 61 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVF 61 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEe
Confidence 35689999999998 445 99999 9999988764 8999999999999987
No 16
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.70 E-value=8e-10 Score=85.13 Aligned_cols=49 Identities=33% Similarity=0.773 Sum_probs=42.3
Q ss_pred CCCCccCccccCCcc-cee--cCCCC-CchhhhcCC----CCCCCcCcccccccccC
Q 013900 385 LVEPVCPICLTNPKD-MAF--GCGHT-TCKDCGTTI----SSCPMCREPITTRLRLY 433 (434)
Q Consensus 385 ~e~~~CpICl~~~kd-v~l--~CGH~-fC~~Ci~~l----~~CPlCR~~i~~~i~ly 433 (434)
.++..|+||++.+++ +.+ +|||. +|..|+..+ ..||+||+++...+++|
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~ 62 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 62 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEE
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeee
Confidence 355789999999999 555 99999 899998765 46999999999999987
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=3.4e-09 Score=81.80 Aligned_cols=50 Identities=28% Similarity=0.647 Sum_probs=42.4
Q ss_pred cCCCCccCccccCCccceecCCCCCchhhhcCC----CCCCCcCcccccccccC
Q 013900 384 ALVEPVCPICLTNPKDMAFGCGHTTCKDCGTTI----SSCPMCREPITTRLRLY 433 (434)
Q Consensus 384 ~~e~~~CpICl~~~kdv~l~CGH~fC~~Ci~~l----~~CPlCR~~i~~~i~ly 433 (434)
..+...|+||++.+.++.++|||.||..|+..| ..||+||.++......|
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 12 LTDEEECCICMDGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCCSSSCCSCCSEEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCCCeeCCcCccCcccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 456789999999988877799999999999865 57999999998766544
No 18
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=1.5e-08 Score=80.13 Aligned_cols=46 Identities=39% Similarity=0.873 Sum_probs=39.9
Q ss_pred ccCCCCccCccccCCcc-ceecCCCCCchhhhcC----------CCCCCCcCccccc
Q 013900 383 TALVEPVCPICLTNPKD-MAFGCGHTTCKDCGTT----------ISSCPMCREPITT 428 (434)
Q Consensus 383 ~~~e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~----------l~~CPlCR~~i~~ 428 (434)
...+...|+||++.+.+ +.++|||.||..|+.. ...||+||..+..
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 45677899999999998 7789999999999864 4689999999875
No 19
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.68 E-value=1.1e-08 Score=76.44 Aligned_cols=45 Identities=27% Similarity=0.593 Sum_probs=39.3
Q ss_pred CCCCccCccccCCcc-ceecCCCCCchhhhcCC-CCCCCcCcccccc
Q 013900 385 LVEPVCPICLTNPKD-MAFGCGHTTCKDCGTTI-SSCPMCREPITTR 429 (434)
Q Consensus 385 ~e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~l-~~CPlCR~~i~~~ 429 (434)
.+...|+||++.+.+ +.++|||.||..|+..+ ..||+||..+...
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSSSSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccCCCCCCcCCcEeecC
Confidence 456899999999999 88899999999999865 5899999998653
No 20
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.67 E-value=7.1e-09 Score=84.18 Aligned_cols=45 Identities=29% Similarity=0.678 Sum_probs=39.1
Q ss_pred ccCCCCccCccccCCcc-ceec-CCCCCchhhhcCC------CCCCCcCcccc
Q 013900 383 TALVEPVCPICLTNPKD-MAFG-CGHTTCKDCGTTI------SSCPMCREPIT 427 (434)
Q Consensus 383 ~~~e~~~CpICl~~~kd-v~l~-CGH~fC~~Ci~~l------~~CPlCR~~i~ 427 (434)
...+++.|+||++.+.+ +.++ |||.||..|+..+ ..||+||.++.
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 35678999999999999 8888 9999999998754 58999999973
No 21
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.67 E-value=2.9e-09 Score=93.49 Aligned_cols=45 Identities=29% Similarity=0.694 Sum_probs=38.9
Q ss_pred CCCCccCccccCCcc-ceecCCCCCchhhhcCC----CCCCCcCcccccc
Q 013900 385 LVEPVCPICLTNPKD-MAFGCGHTTCKDCGTTI----SSCPMCREPITTR 429 (434)
Q Consensus 385 ~e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~l----~~CPlCR~~i~~~ 429 (434)
+++..|+||++.+.+ +.++|||.||..|+..| ..||+||.++..+
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 346789999999999 88899999999998754 6799999998754
No 22
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.66 E-value=5.6e-09 Score=88.44 Aligned_cols=46 Identities=33% Similarity=0.801 Sum_probs=39.7
Q ss_pred ccCCCCccCccccCCcc-ceecCCCCCchhhhcCC-----CCCCCcCccccc
Q 013900 383 TALVEPVCPICLTNPKD-MAFGCGHTTCKDCGTTI-----SSCPMCREPITT 428 (434)
Q Consensus 383 ~~~e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~l-----~~CPlCR~~i~~ 428 (434)
...++..|+||++.+.+ +.++|||.||..|+..+ ..||+||..+..
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 34567899999999999 88899999999999876 379999999863
No 23
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.66 E-value=8.4e-09 Score=81.24 Aligned_cols=47 Identities=26% Similarity=0.571 Sum_probs=38.3
Q ss_pred ccCCCCccCccccCCcc----ceecCCCCCchhhhcCC----CCCCCcCcccccc
Q 013900 383 TALVEPVCPICLTNPKD----MAFGCGHTTCKDCGTTI----SSCPMCREPITTR 429 (434)
Q Consensus 383 ~~~e~~~CpICl~~~kd----v~l~CGH~fC~~Ci~~l----~~CPlCR~~i~~~ 429 (434)
...+...|+||++.+.+ +.++|||.||..|+..| ..||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 34667899999988764 34599999999998754 6899999998764
No 24
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.65 E-value=6.2e-09 Score=105.13 Aligned_cols=50 Identities=28% Similarity=0.842 Sum_probs=46.6
Q ss_pred cCCCCccCccccCCcc-ceecCCCC-CchhhhcCCCCCCCcCcccccccccC
Q 013900 384 ALVEPVCPICLTNPKD-MAFGCGHT-TCKDCGTTISSCPMCREPITTRLRLY 433 (434)
Q Consensus 384 ~~e~~~CpICl~~~kd-v~l~CGH~-fC~~Ci~~l~~CPlCR~~i~~~i~ly 433 (434)
.+++..|+||++.+++ +.++|||. ||..|+..+..||+||.++..++++|
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~~~i~ 343 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTF 343 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEEEECC
T ss_pred CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCeEEee
Confidence 4567899999999999 77799999 99999999999999999999999988
No 25
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.64 E-value=7.4e-09 Score=81.58 Aligned_cols=45 Identities=24% Similarity=0.322 Sum_probs=39.2
Q ss_pred cCCCCccCccccCCcc-ceecCCCCCchhhhcC-----CCCCCCcCccccc
Q 013900 384 ALVEPVCPICLTNPKD-MAFGCGHTTCKDCGTT-----ISSCPMCREPITT 428 (434)
Q Consensus 384 ~~e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~-----l~~CPlCR~~i~~ 428 (434)
..+++.|+||++.+++ +.++|||.||..|+.. ...||+||.++..
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred CcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 4567899999999999 8889999999999864 3579999999864
No 26
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.63 E-value=6e-09 Score=80.28 Aligned_cols=46 Identities=30% Similarity=0.821 Sum_probs=38.0
Q ss_pred cCCCCccCccccCCcc--------ceecCCCCCchhhhcCC----CCCCCcCcccccc
Q 013900 384 ALVEPVCPICLTNPKD--------MAFGCGHTTCKDCGTTI----SSCPMCREPITTR 429 (434)
Q Consensus 384 ~~e~~~CpICl~~~kd--------v~l~CGH~fC~~Ci~~l----~~CPlCR~~i~~~ 429 (434)
..++..|+||++.+.+ +.++|||.||..|+..| ..||+||.++...
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 3567899999998765 45699999999999754 6899999998753
No 27
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.61 E-value=9e-09 Score=78.87 Aligned_cols=48 Identities=38% Similarity=0.903 Sum_probs=40.0
Q ss_pred CCCCccCccccCCcc--ceecCCCCCchhhhcCC----CCCCCcCccccccccc
Q 013900 385 LVEPVCPICLTNPKD--MAFGCGHTTCKDCGTTI----SSCPMCREPITTRLRL 432 (434)
Q Consensus 385 ~e~~~CpICl~~~kd--v~l~CGH~fC~~Ci~~l----~~CPlCR~~i~~~i~l 432 (434)
+++..|+||++.+.+ +.++|||.||..|+..| ..||+||.++...++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 56 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHT 56 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCEECC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhhhhc
Confidence 345789999999988 55699999999998754 6899999999876544
No 28
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.57 E-value=8.4e-09 Score=88.59 Aligned_cols=44 Identities=30% Similarity=0.533 Sum_probs=38.7
Q ss_pred CCCCccCccccCCcc-ceecCCCCCchhhhcCC-----CCCCCcCccccc
Q 013900 385 LVEPVCPICLTNPKD-MAFGCGHTTCKDCGTTI-----SSCPMCREPITT 428 (434)
Q Consensus 385 ~e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~l-----~~CPlCR~~i~~ 428 (434)
.++..|+||++.+.+ +.++|||.||..|+..+ ..||+||.++..
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 456899999999999 88899999999998643 489999999876
No 29
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=2.4e-08 Score=77.78 Aligned_cols=49 Identities=22% Similarity=0.569 Sum_probs=39.3
Q ss_pred ccCCCCccCccccCCcc----ceecCCCCCchhhhcCC----CCCCCcCcccccccc
Q 013900 383 TALVEPVCPICLTNPKD----MAFGCGHTTCKDCGTTI----SSCPMCREPITTRLR 431 (434)
Q Consensus 383 ~~~e~~~CpICl~~~kd----v~l~CGH~fC~~Ci~~l----~~CPlCR~~i~~~i~ 431 (434)
...++..|+||++.+.+ ..++|||.||..|+..| ..||+||.++....+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 34567899999998765 33499999999999865 589999999876544
No 30
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.54 E-value=1e-08 Score=85.19 Aligned_cols=46 Identities=26% Similarity=0.596 Sum_probs=40.1
Q ss_pred ccCCCCccCccccCCcc-ce-ecCCCCCchhhhcCC-----CCCCCcCccccc
Q 013900 383 TALVEPVCPICLTNPKD-MA-FGCGHTTCKDCGTTI-----SSCPMCREPITT 428 (434)
Q Consensus 383 ~~~e~~~CpICl~~~kd-v~-l~CGH~fC~~Ci~~l-----~~CPlCR~~i~~ 428 (434)
...++..|+||++.+.+ +. ++|||.||..|+..| ..||+||.++..
T Consensus 18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 35678999999999999 77 899999999999854 589999999864
No 31
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.54 E-value=3.7e-08 Score=75.70 Aligned_cols=49 Identities=29% Similarity=0.569 Sum_probs=39.4
Q ss_pred cCCCCccCccccCCcc----ceecCCCCCchhhhcCC----CCCCCcCccccccccc
Q 013900 384 ALVEPVCPICLTNPKD----MAFGCGHTTCKDCGTTI----SSCPMCREPITTRLRL 432 (434)
Q Consensus 384 ~~e~~~CpICl~~~kd----v~l~CGH~fC~~Ci~~l----~~CPlCR~~i~~~i~l 432 (434)
..++..|+||++.+.. +.++|||.||..|+..| ..||+||..+....+.
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 67 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLPS 67 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcCCC
Confidence 3556799999987743 55799999999999865 6799999999876543
No 32
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=4.5e-08 Score=72.38 Aligned_cols=40 Identities=40% Similarity=0.930 Sum_probs=34.2
Q ss_pred ccCCCCccCccccCCcc-ceecCCCCCchhhhcCC-------CCCCCc
Q 013900 383 TALVEPVCPICLTNPKD-MAFGCGHTTCKDCGTTI-------SSCPMC 422 (434)
Q Consensus 383 ~~~e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~l-------~~CPlC 422 (434)
...+...|+||++.+++ +.++|||.||..|+..+ ..||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34667899999999999 78899999999998754 579987
No 33
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=3.5e-08 Score=78.91 Aligned_cols=46 Identities=28% Similarity=0.749 Sum_probs=38.0
Q ss_pred ccCCCCccCccccCCcc-----ceecCCCCCchhhhcCC-------CCCCCcCccccc
Q 013900 383 TALVEPVCPICLTNPKD-----MAFGCGHTTCKDCGTTI-------SSCPMCREPITT 428 (434)
Q Consensus 383 ~~~e~~~CpICl~~~kd-----v~l~CGH~fC~~Ci~~l-------~~CPlCR~~i~~ 428 (434)
...+...|+||++.+.+ +.++|||.||..|+..| ..||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 35667899999998876 44699999999998754 589999998754
No 34
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.52 E-value=1.5e-08 Score=76.17 Aligned_cols=48 Identities=31% Similarity=0.863 Sum_probs=38.5
Q ss_pred CCCccCccccCCcc--------ceecCCCCCchhhhcCC----CCCCCcCcccccc--cccC
Q 013900 386 VEPVCPICLTNPKD--------MAFGCGHTTCKDCGTTI----SSCPMCREPITTR--LRLY 433 (434)
Q Consensus 386 e~~~CpICl~~~kd--------v~l~CGH~fC~~Ci~~l----~~CPlCR~~i~~~--i~ly 433 (434)
++..|+||++.+.+ +.++|||.||..|+..| ..||+||.++... .++|
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence 45789999998765 45699999999999765 5899999998753 4444
No 35
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=3.5e-08 Score=74.66 Aligned_cols=40 Identities=40% Similarity=0.962 Sum_probs=34.4
Q ss_pred ccCCCCccCccccCCcc-ceecCCCCCchhhhcCC-------CCCCCc
Q 013900 383 TALVEPVCPICLTNPKD-MAFGCGHTTCKDCGTTI-------SSCPMC 422 (434)
Q Consensus 383 ~~~e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~l-------~~CPlC 422 (434)
..+++..|+||++.+.+ +.++|||.||..|+..+ ..||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 35678899999999999 77899999999998754 479988
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.48 E-value=2.6e-08 Score=83.47 Aligned_cols=46 Identities=24% Similarity=0.541 Sum_probs=39.9
Q ss_pred cCCCCccCccccCCcc-cee-cCCCCCchhhhcCC----CCCCCcCcccccc
Q 013900 384 ALVEPVCPICLTNPKD-MAF-GCGHTTCKDCGTTI----SSCPMCREPITTR 429 (434)
Q Consensus 384 ~~e~~~CpICl~~~kd-v~l-~CGH~fC~~Ci~~l----~~CPlCR~~i~~~ 429 (434)
..++..|+||++.+.+ +.+ +|||.||..|+..+ ..||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 4667899999999999 777 99999999998755 6899999998753
No 37
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.48 E-value=7e-08 Score=80.51 Aligned_cols=46 Identities=24% Similarity=0.169 Sum_probs=40.5
Q ss_pred cCCCCccCccccCCcc-ceecCC-CCCchhhhcCC----CCCCCcCcccccc
Q 013900 384 ALVEPVCPICLTNPKD-MAFGCG-HTTCKDCGTTI----SSCPMCREPITTR 429 (434)
Q Consensus 384 ~~e~~~CpICl~~~kd-v~l~CG-H~fC~~Ci~~l----~~CPlCR~~i~~~ 429 (434)
..+++.||||++.++| |.++|| |+||+.|+..+ ..||+||.++...
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred CcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 4678999999999999 999999 99999998754 5799999998754
No 38
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.48 E-value=2.7e-08 Score=75.86 Aligned_cols=44 Identities=34% Similarity=0.853 Sum_probs=35.7
Q ss_pred CCCccCcccc-CCcc-----ceecCCCCCchhhhcCC-----CCCCCcCcccccc
Q 013900 386 VEPVCPICLT-NPKD-----MAFGCGHTTCKDCGTTI-----SSCPMCREPITTR 429 (434)
Q Consensus 386 e~~~CpICl~-~~kd-----v~l~CGH~fC~~Ci~~l-----~~CPlCR~~i~~~ 429 (434)
++..|+||++ .+.+ +.++|||.||..|+..+ ..||+||.++...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 4678999999 6655 24699999999998755 5799999998753
No 39
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.47 E-value=5.9e-08 Score=71.20 Aligned_cols=43 Identities=30% Similarity=0.700 Sum_probs=35.3
Q ss_pred CCCCccCccccCCcc----ceec-CCCCCchhhhcCC----CCCCCcCcccc
Q 013900 385 LVEPVCPICLTNPKD----MAFG-CGHTTCKDCGTTI----SSCPMCREPIT 427 (434)
Q Consensus 385 ~e~~~CpICl~~~kd----v~l~-CGH~fC~~Ci~~l----~~CPlCR~~i~ 427 (434)
+++..|+||++.+.+ +.++ |||.||..|+..| ..||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 466799999998766 4455 9999999999865 57999998864
No 40
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.46 E-value=5e-08 Score=83.11 Aligned_cols=45 Identities=24% Similarity=0.664 Sum_probs=39.9
Q ss_pred cCCCCccCccccCCcc-cee-cCCCCCchhhhcCC--CCCCCcCccccc
Q 013900 384 ALVEPVCPICLTNPKD-MAF-GCGHTTCKDCGTTI--SSCPMCREPITT 428 (434)
Q Consensus 384 ~~e~~~CpICl~~~kd-v~l-~CGH~fC~~Ci~~l--~~CPlCR~~i~~ 428 (434)
..+...|+||++.+.+ +.+ +|||.||..|+..+ ..||+||.++..
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWI 67 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSC
T ss_pred chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCcc
Confidence 4678999999999999 887 99999999999987 579999999853
No 41
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.46 E-value=4.2e-08 Score=79.57 Aligned_cols=46 Identities=20% Similarity=0.091 Sum_probs=40.4
Q ss_pred cCCCCccCccccCCcc-ceecCCCCCchhhhcCC----CCCCCcCcccccc
Q 013900 384 ALVEPVCPICLTNPKD-MAFGCGHTTCKDCGTTI----SSCPMCREPITTR 429 (434)
Q Consensus 384 ~~e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~l----~~CPlCR~~i~~~ 429 (434)
..+++.||||++.+++ +.++|||+||+.|+..+ ..||+||.++...
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 3567999999999999 99999999999998754 6899999998754
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.45 E-value=2.6e-08 Score=89.06 Aligned_cols=45 Identities=29% Similarity=0.581 Sum_probs=39.0
Q ss_pred CCCCccCccccCCcc-ceecCCCCCchhhhcCC-----CCCCCcCcccccc
Q 013900 385 LVEPVCPICLTNPKD-MAFGCGHTTCKDCGTTI-----SSCPMCREPITTR 429 (434)
Q Consensus 385 ~e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~l-----~~CPlCR~~i~~~ 429 (434)
.+...|+||++.+.+ +.++|||.||..|+..+ ..||+||.++...
T Consensus 76 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred ccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 356899999999999 88899999999998754 4799999998765
No 43
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.44 E-value=4.7e-08 Score=79.87 Aligned_cols=46 Identities=28% Similarity=0.584 Sum_probs=37.4
Q ss_pred cCCCCccCccccCCcc----ceecCCCCCchhhhcCC----CCCCCcCcccccc
Q 013900 384 ALVEPVCPICLTNPKD----MAFGCGHTTCKDCGTTI----SSCPMCREPITTR 429 (434)
Q Consensus 384 ~~e~~~CpICl~~~kd----v~l~CGH~fC~~Ci~~l----~~CPlCR~~i~~~ 429 (434)
..++..|+||++.+.+ +.++|||.||..|+..| ..||+||..+...
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 90 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPPP 90 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSCC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCCC
Confidence 3567899999987755 45799999999998754 6899999988654
No 44
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.43 E-value=4.8e-08 Score=81.66 Aligned_cols=45 Identities=40% Similarity=0.834 Sum_probs=38.3
Q ss_pred CCCCccCccccCCcc-ceecCCCCCchhhhcCC-------CCCCCcCcccccc
Q 013900 385 LVEPVCPICLTNPKD-MAFGCGHTTCKDCGTTI-------SSCPMCREPITTR 429 (434)
Q Consensus 385 ~e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~l-------~~CPlCR~~i~~~ 429 (434)
.+...|+||++.+.+ +.++|||.||..|+..+ ..||+||.++...
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 456799999999999 77899999999998743 3799999998753
No 45
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.42 E-value=3.3e-08 Score=81.47 Aligned_cols=45 Identities=27% Similarity=0.541 Sum_probs=38.4
Q ss_pred cCCCCccCccccCCcc-cee-cCCCCCchhhhcCC----CCCCCcCccccc
Q 013900 384 ALVEPVCPICLTNPKD-MAF-GCGHTTCKDCGTTI----SSCPMCREPITT 428 (434)
Q Consensus 384 ~~e~~~CpICl~~~kd-v~l-~CGH~fC~~Ci~~l----~~CPlCR~~i~~ 428 (434)
..+...|+||++.+.+ +.+ +|||.||..|+..+ ..||+||..+..
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 3566899999999999 666 99999999998754 589999999874
No 46
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.42 E-value=5.4e-08 Score=81.48 Aligned_cols=46 Identities=20% Similarity=0.104 Sum_probs=40.3
Q ss_pred cCCCCccCccccCCcc-ceecCCCCCchhhhcCC----CCCCCcCcccccc
Q 013900 384 ALVEPVCPICLTNPKD-MAFGCGHTTCKDCGTTI----SSCPMCREPITTR 429 (434)
Q Consensus 384 ~~e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~l----~~CPlCR~~i~~~ 429 (434)
..+.+.||||++.+++ +.++|||+||+.|+..+ ..||+||.++...
T Consensus 26 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred CcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 4567999999999999 99999999999998754 5799999998753
No 47
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.41 E-value=5e-08 Score=76.43 Aligned_cols=46 Identities=20% Similarity=0.589 Sum_probs=37.4
Q ss_pred cCCCCccCccccCCcc----ceecCCCCCchhhhcCC----CCCCCcCcccccc
Q 013900 384 ALVEPVCPICLTNPKD----MAFGCGHTTCKDCGTTI----SSCPMCREPITTR 429 (434)
Q Consensus 384 ~~e~~~CpICl~~~kd----v~l~CGH~fC~~Ci~~l----~~CPlCR~~i~~~ 429 (434)
..++..|+||++.+.+ +.++|||.||..|+..| ..||+||+.+...
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 3456799999987765 45699999999998865 6899999988653
No 48
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.39 E-value=8.2e-08 Score=70.30 Aligned_cols=42 Identities=31% Similarity=0.811 Sum_probs=34.9
Q ss_pred CCCccCccccCCcc-----ceecCCCCCchhhhcCC----CCCCCcCcccc
Q 013900 386 VEPVCPICLTNPKD-----MAFGCGHTTCKDCGTTI----SSCPMCREPIT 427 (434)
Q Consensus 386 e~~~CpICl~~~kd-----v~l~CGH~fC~~Ci~~l----~~CPlCR~~i~ 427 (434)
++..|+||++.+.+ +.++|||.||..|+..| ..||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45789999998743 45699999999999865 68999999875
No 49
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.38 E-value=7.3e-08 Score=82.18 Aligned_cols=47 Identities=30% Similarity=0.645 Sum_probs=40.5
Q ss_pred ccCCCCccCccccCCcc-ceecCCCCCchhhhcCC-----CCCCCcCcccccc
Q 013900 383 TALVEPVCPICLTNPKD-MAFGCGHTTCKDCGTTI-----SSCPMCREPITTR 429 (434)
Q Consensus 383 ~~~e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~l-----~~CPlCR~~i~~~ 429 (434)
..++...|+||++.+.+ +.++|||.||..|+..+ ..||+||.++...
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 35677899999999999 88899999999999765 4899999998753
No 50
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.38 E-value=4.2e-08 Score=88.22 Aligned_cols=45 Identities=40% Similarity=0.849 Sum_probs=38.2
Q ss_pred cCCCCccCccccCCcc-cee-cCCCCCchhhhcCC-----CCCCCcCccccc
Q 013900 384 ALVEPVCPICLTNPKD-MAF-GCGHTTCKDCGTTI-----SSCPMCREPITT 428 (434)
Q Consensus 384 ~~e~~~CpICl~~~kd-v~l-~CGH~fC~~Ci~~l-----~~CPlCR~~i~~ 428 (434)
..+...|+||++.+.+ +.+ +|||.||..|+..| ..||+||.++..
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 4556799999999999 766 99999999998754 569999999854
No 51
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.36 E-value=1e-07 Score=91.06 Aligned_cols=44 Identities=16% Similarity=0.056 Sum_probs=38.3
Q ss_pred CCCccCccccCCcc-ceecCCCCCchhhhcCC-----CCCCCcCcccccc
Q 013900 386 VEPVCPICLTNPKD-MAFGCGHTTCKDCGTTI-----SSCPMCREPITTR 429 (434)
Q Consensus 386 e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~l-----~~CPlCR~~i~~~ 429 (434)
+.+.||||++.+++ |+++|||+||+.|+..+ ..||+||.+++..
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred cccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 46899999999999 99999999999998743 3499999998753
No 52
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.31 E-value=1e-07 Score=80.31 Aligned_cols=43 Identities=23% Similarity=0.485 Sum_probs=34.4
Q ss_pred CCccCccccCCcc-c------------------eecCCCCCchhhhcCC---------CCCCCcCcccccc
Q 013900 387 EPVCPICLTNPKD-M------------------AFGCGHTTCKDCGTTI---------SSCPMCREPITTR 429 (434)
Q Consensus 387 ~~~CpICl~~~kd-v------------------~l~CGH~fC~~Ci~~l---------~~CPlCR~~i~~~ 429 (434)
+..|+||++.+.+ . .++|||.||..|+..| ..||+||..+..+
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 4589999988744 2 5699999999998754 4799999988654
No 53
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.27 E-value=3.2e-07 Score=93.90 Aligned_cols=46 Identities=37% Similarity=0.725 Sum_probs=39.4
Q ss_pred CCCccCccccCCcc-ceecCCCCCchhhhcC-----CCCCCCcCcccccccc
Q 013900 386 VEPVCPICLTNPKD-MAFGCGHTTCKDCGTT-----ISSCPMCREPITTRLR 431 (434)
Q Consensus 386 e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~-----l~~CPlCR~~i~~~i~ 431 (434)
....|+||++.+++ +.++|||.||..|+.. ...||+||.++.....
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 382 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCcee
Confidence 34799999999999 7789999999999874 4789999999987643
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.26 E-value=5.5e-08 Score=86.16 Aligned_cols=44 Identities=23% Similarity=0.549 Sum_probs=38.7
Q ss_pred ccCCCCccCccccCCcc-ceecCCCCCchhhhcCC-----CCCCCcCccc
Q 013900 383 TALVEPVCPICLTNPKD-MAFGCGHTTCKDCGTTI-----SSCPMCREPI 426 (434)
Q Consensus 383 ~~~e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~l-----~~CPlCR~~i 426 (434)
..++++.|+||++.+++ +.++|||.||..|+..+ ..||+||.++
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 35678999999999999 88899999999998865 4799999975
No 55
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.26 E-value=1.4e-07 Score=79.96 Aligned_cols=46 Identities=30% Similarity=0.584 Sum_probs=39.3
Q ss_pred cCCCCccCccccCCcc-ceecCCCCCchhhhcCC-----CCCCCcCcccccc
Q 013900 384 ALVEPVCPICLTNPKD-MAFGCGHTTCKDCGTTI-----SSCPMCREPITTR 429 (434)
Q Consensus 384 ~~e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~l-----~~CPlCR~~i~~~ 429 (434)
..++..|+||++.+.+ +.++|||.||..|+..+ ..||+||.++...
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 4567899999999999 77899999999998743 5799999998753
No 56
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=98.20 E-value=1.4e-05 Score=76.93 Aligned_cols=152 Identities=15% Similarity=0.172 Sum_probs=104.2
Q ss_pred ceeceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHH-HHHHHHHhhcccccCC---CCCcceEeeCCCCCCCCcceec
Q 013900 103 ESSNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPY-EQAISIIGRTLSPFDE---DNLIPCFGFGDASTHDQYVFSF 178 (434)
Q Consensus 103 ~~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Y-e~AI~~Ig~vl~~yD~---d~~ip~~GFGa~~~~~~~vf~~ 178 (434)
+.+++++.||-+.|=+. ..+ +++...+..++..+.. +-.+-++.|+.... .+|.+
T Consensus 20 ~~~div~vlD~SgSM~~------------------~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~---~~~~l 78 (281)
T 4hqf_A 20 DEVDLYLLMDGSGSIRR------------------HNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAR---EIIRL 78 (281)
T ss_dssp SCEEEEEEEECCCCSST------------------HHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEE---EEEEE
T ss_pred CceeEEEEEeCCCCcCH------------------HHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCce---EEEEc
Confidence 35899999999877421 234 5666666666666665 56799999987532 34555
Q ss_pred CCCCCCcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHccC---ccEEEEEEeCCcccCCCCCCCCCCChhHH
Q 013900 179 YPDNHYCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEASNR---QYHVLVIIADGQVTRNPDTPAGRLSPQEQ 255 (434)
Q Consensus 179 ~~~~~~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~~~---~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~ 255 (434)
..... ...+.++++-..+-......|-|+....|+.|.+.....+. .-.++|+||||..+| ..
T Consensus 79 ~~~~~--~~~~~l~~~i~~l~~~~~~~G~T~~~~aL~~a~~~l~~~~~r~~~~~~iillTDG~~~d------------~~ 144 (281)
T 4hqf_A 79 HSDAS--KNKEKALIIIKSLLSTNLPYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIPDS------------IQ 144 (281)
T ss_dssp CSSCS--SCHHHHHHHHHHHHHTTGGGCSCCHHHHHHHHHHHHHTSCCCTTCEEEEEEEESSCCSC------------HH
T ss_pred cccCc--cCHHHHHHHHHHHhhccCCCCCccHHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCCC------------cH
Confidence 43321 23456655555443345578999999999999887664422 467889999999886 45
Q ss_pred HHHHHHHHhccCCcEEEEEecccC-CcccccccCC
Q 013900 256 ATVNSIVAASHYPLSIILVGVGDG-PWDSVQQFDD 289 (434)
Q Consensus 256 ~T~~aIv~AS~~PLSIIiVGVGd~-~f~~m~~lD~ 289 (434)
...+++..+...-+-|+.||||+. +-+.|+.+-+
T Consensus 145 ~~~~~~~~l~~~gv~i~~igiG~~~~~~~L~~iA~ 179 (281)
T 4hqf_A 145 DSLKESRKLSDRGVKIAVFGIGQGINVAFNRFLVG 179 (281)
T ss_dssp HHHHHHHHHHHTTCEEEEEEESSSCCHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCccCHHHHHhhhC
Confidence 677777777778899999999986 4555666644
No 57
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=98.16 E-value=1.6e-05 Score=76.29 Aligned_cols=151 Identities=13% Similarity=0.207 Sum_probs=102.0
Q ss_pred eeceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHH-HHHHHHHhhcccccC---CCCCcceEeeCCCCCCCCcceecC
Q 013900 104 SSNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPY-EQAISIIGRTLSPFD---EDNLIPCFGFGDASTHDQYVFSFY 179 (434)
Q Consensus 104 ~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Y-e~AI~~Ig~vl~~yD---~d~~ip~~GFGa~~~~~~~vf~~~ 179 (434)
.+++++.||-+.|=+ ...+ +++...+-.++..|+ ++-.+-++.|+.... .+|.|.
T Consensus 18 ~~DivfvlD~SgSM~------------------~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~---~~~~l~ 76 (266)
T 4hqo_A 18 QVDLYLLVDGSGSIG------------------YPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTT---ELIRLG 76 (266)
T ss_dssp CEEEEEEEECSTTTC------------------HHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEE---EEECTT
T ss_pred ceeEEEEEECCCCcC------------------hhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcc---eEEecC
Confidence 378999999987742 1234 356666667777776 566788899987632 234443
Q ss_pred CCCCCcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHc---cCccEEEEEEeCCcccCCCCCCCCCCChhHHH
Q 013900 180 PDNHYCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEAS---NRQYHVLVIIADGQVTRNPDTPAGRLSPQEQA 256 (434)
Q Consensus 180 ~~~~~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~---~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~ 256 (434)
... -...+.++++-..+-......|-|+....|+.|.+..... ...-.++|+||||..+| ...
T Consensus 77 ~~~--~~~~~~~~~~i~~l~~~~~~~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIllTDG~~~d------------~~~ 142 (266)
T 4hqo_A 77 SGQ--SIDKRQALSKVTELRKTYTPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPNS------------KYR 142 (266)
T ss_dssp SHH--HHCHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEEEECSCCSC------------HHH
T ss_pred CCC--ccCHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHhhccccCCCCeEEEEEccCCCCC------------chH
Confidence 211 1124555555444422335679999999999998877654 23458899999999886 566
Q ss_pred HHHHHHHhccCCcEEEEEecccCC-cccccccCC
Q 013900 257 TVNSIVAASHYPLSIILVGVGDGP-WDSVQQFDD 289 (434)
Q Consensus 257 T~~aIv~AS~~PLSIIiVGVGd~~-f~~m~~lD~ 289 (434)
..+++..+....+.|..||||+.. .+.|+++-+
T Consensus 143 ~~~~a~~l~~~gi~i~~iGiG~~~~~~~L~~iA~ 176 (266)
T 4hqo_A 143 ALEVANKLKQRNVRLAVIGIGQGINHQFNRLIAG 176 (266)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSSCCHHHHHHHHT
T ss_pred HHHHHHHHHHCCCEEEEEecCcccCHHHHHHhhC
Confidence 777788887888999999999854 333355443
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.15 E-value=5.5e-07 Score=74.13 Aligned_cols=43 Identities=30% Similarity=0.549 Sum_probs=36.4
Q ss_pred CCCCccCccccCCcc-ceec-CCCCCchhhhcCC----------CCCCC--cCcc-cc
Q 013900 385 LVEPVCPICLTNPKD-MAFG-CGHTTCKDCGTTI----------SSCPM--CREP-IT 427 (434)
Q Consensus 385 ~e~~~CpICl~~~kd-v~l~-CGH~fC~~Ci~~l----------~~CPl--CR~~-i~ 427 (434)
.+++.||||++.+++ |.++ |||+||+.|+..+ ..||+ |+.. +.
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~ 62 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR 62 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence 567899999999999 8885 9999999998743 38999 9866 44
No 59
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.13 E-value=4.2e-07 Score=77.41 Aligned_cols=45 Identities=31% Similarity=0.837 Sum_probs=37.2
Q ss_pred CCCCccCccccCCcc--------ceecCCCCCchhhhcCC----CCCCCcCcccccc
Q 013900 385 LVEPVCPICLTNPKD--------MAFGCGHTTCKDCGTTI----SSCPMCREPITTR 429 (434)
Q Consensus 385 ~e~~~CpICl~~~kd--------v~l~CGH~fC~~Ci~~l----~~CPlCR~~i~~~ 429 (434)
.++..|+||++.+.+ +.++|||.||..|+..| ..||+||..+...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 456899999998765 45699999999998754 6899999998754
No 60
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.10 E-value=6.4e-07 Score=82.72 Aligned_cols=44 Identities=16% Similarity=0.040 Sum_probs=38.2
Q ss_pred CCCccCccccCCcc-ceecCCCCCchhhhcCC-----CCCCCcCcccccc
Q 013900 386 VEPVCPICLTNPKD-MAFGCGHTTCKDCGTTI-----SSCPMCREPITTR 429 (434)
Q Consensus 386 e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~l-----~~CPlCR~~i~~~ 429 (434)
+.+.||||++.+++ |.++|||+||+.|+..+ ..||+||.++...
T Consensus 105 ~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 105 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred HhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 46899999999999 88999999999998743 3699999998754
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.07 E-value=8.1e-07 Score=80.05 Aligned_cols=47 Identities=30% Similarity=0.645 Sum_probs=40.7
Q ss_pred ccCCCCccCccccCCcc-ceecCCCCCchhhhcCC-----CCCCCcCcccccc
Q 013900 383 TALVEPVCPICLTNPKD-MAFGCGHTTCKDCGTTI-----SSCPMCREPITTR 429 (434)
Q Consensus 383 ~~~e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~l-----~~CPlCR~~i~~~ 429 (434)
...+.+.|+||++.+.+ +.++|||.||..|+..+ ..||+||.++...
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 35677999999999999 88899999999999765 4899999998753
No 62
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.02 E-value=8.2e-07 Score=75.56 Aligned_cols=49 Identities=31% Similarity=0.821 Sum_probs=39.4
Q ss_pred CCCCccCccccCCcc--------ceecCCCCCchhhhcCC----CCCCCcCcccccc--cccC
Q 013900 385 LVEPVCPICLTNPKD--------MAFGCGHTTCKDCGTTI----SSCPMCREPITTR--LRLY 433 (434)
Q Consensus 385 ~e~~~CpICl~~~kd--------v~l~CGH~fC~~Ci~~l----~~CPlCR~~i~~~--i~ly 433 (434)
++...|+||++.+.+ +.++|||.||..|+..| ..||+||..+... +++|
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 456789999988765 55699999999998754 7899999999764 3444
No 63
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=1.5e-06 Score=69.46 Aligned_cols=43 Identities=23% Similarity=0.627 Sum_probs=32.6
Q ss_pred CCCccCccccCCcc---------------cee-cCCCCCchhhhcCC----CCCCCcCccccc
Q 013900 386 VEPVCPICLTNPKD---------------MAF-GCGHTTCKDCGTTI----SSCPMCREPITT 428 (434)
Q Consensus 386 e~~~CpICl~~~kd---------------v~l-~CGH~fC~~Ci~~l----~~CPlCR~~i~~ 428 (434)
++..|+||++.+.+ +.+ +|||.||..|+..| ..||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 45678888876632 244 69999999999854 579999998754
No 64
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=97.95 E-value=4.1e-05 Score=67.73 Aligned_cols=147 Identities=14% Similarity=0.145 Sum_probs=95.2
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCCcceEeeCCCCCCCCcceecCCCCCC
Q 013900 105 SNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDEDNLIPCFGFGDASTHDQYVFSFYPDNHY 184 (434)
Q Consensus 105 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~d~~ip~~GFGa~~~~~~~vf~~~~~~~~ 184 (434)
+++++.||-+.|=... .....+.|...+..++. .+-.+-++.|+.... .++.+.
T Consensus 7 ~dvv~vlD~SgSM~~~---------------~~~~~~~~~~~~~~~~~---~~~~v~lv~f~~~~~---~~~~~~----- 60 (182)
T 1shu_X 7 FDLYFVLDKSGSVANN---------------WIEIYNFVQQLAERFVS---PEMRLSFIVFSSQAT---IILPLT----- 60 (182)
T ss_dssp EEEEEEEECSGGGGGG---------------HHHHHHHHHHHHHHCCC---TTEEEEEEEESSSEE---EEEEEE-----
T ss_pred eeEEEEEECCCCcccC---------------HHHHHHHHHHHHHHhcC---CCceEEEEEeCCCce---EEECCC-----
Confidence 7899999998774210 01122334444444443 466789999987532 233443
Q ss_pred cCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHc--cCccEEEEEEeCCcccCCCCCCCCCCChhHHHHHHHHH
Q 013900 185 CHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEAS--NRQYHVLVIIADGQVTRNPDTPAGRLSPQEQATVNSIV 262 (434)
Q Consensus 185 ~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~--~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv 262 (434)
.+.+.+.++-.. +..+...|.|++...|+.|.+..... ...-.++++||||..++. ......+++.
T Consensus 61 -~~~~~~~~~l~~-l~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~iiliTDG~~~~~----------~~~~~~~~~~ 128 (182)
T 1shu_X 61 -GDRGKISKGLED-LKRVSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGL----------VPSYAEKEAK 128 (182)
T ss_dssp -CCHHHHHHHHHH-HHTCCCCSCCCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTT----------HHHHHHHHHH
T ss_pred -CCHHHHHHHHHh-cccCCCCCCchHHHHHHHHHHHHHhccCCCCCeEEEEECCCCcCCC----------CchhHHHHHH
Confidence 233333333222 23455779999999999999987654 234678899999987751 1233455666
Q ss_pred HhccCCcEEEEEecccCCcccccccCC
Q 013900 263 AASHYPLSIILVGVGDGPWDSVQQFDD 289 (434)
Q Consensus 263 ~AS~~PLSIIiVGVGd~~f~~m~~lD~ 289 (434)
.+....+.|..||||+.+...|+++-+
T Consensus 129 ~~~~~~i~i~~igvg~~~~~~L~~ia~ 155 (182)
T 1shu_X 129 ISRSLGASVYCVGVLDFEQAQLERIAD 155 (182)
T ss_dssp HHHHTTCEEEEEECSSCCHHHHHHHSS
T ss_pred HHHhCCCEEEEEeCCcCCHHHHHHHhC
Confidence 677788999999999888777777755
No 65
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=97.91 E-value=7.7e-05 Score=66.11 Aligned_cols=148 Identities=14% Similarity=0.115 Sum_probs=92.6
Q ss_pred eeceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCCcceEeeCCCCCCCCcceecCCCCC
Q 013900 104 SSNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDEDNLIPCFGFGDASTHDQYVFSFYPDNH 183 (434)
Q Consensus 104 ~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~d~~ip~~GFGa~~~~~~~vf~~~~~~~ 183 (434)
.+++++.||-+.|=+. ....-.+++..+...+ ..++-.+-++.|+.... .++.+..
T Consensus 7 ~~div~vlD~SgSM~~----------------~~~~~~~~~~~~~~~~--~~~~~~v~lv~f~~~~~---~~~~l~~--- 62 (185)
T 3n2n_F 7 GFDLYFILDKSGSVLH----------------HWNEIYYFVEQLAHKF--ISPQLRMSFIVFSTRGT---TLMKLTE--- 62 (185)
T ss_dssp EEEEEEEEECSGGGGG----------------GHHHHHHHHHHHHHHC--CCTTEEEEEEEESSSEE---EEEEEEC---
T ss_pred CeeEEEEEeCCCChhh----------------hHHHHHHHHHHHHHHh--CCCCcEEEEEEEecCce---EEeccCC---
Confidence 3789999998876420 0011223333333333 22356788999987532 2344432
Q ss_pred CcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHH--cc--CccEEEEEEeCCcccCCCCCCCCCCChhHHHHHH
Q 013900 184 YCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEA--SN--RQYHVLVIIADGQVTRNPDTPAGRLSPQEQATVN 259 (434)
Q Consensus 184 ~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~--~~--~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~ 259 (434)
..+.+.++-.++- .+...|-|+....|+.|.+.... .. ..-.++++||||..++. ......+
T Consensus 63 ---~~~~~~~~i~~l~-~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~~~----------~~~~~~~ 128 (185)
T 3n2n_F 63 ---DREQIRQGLEELQ-KVLPGGDTYMHEGFERASEQIYYENRQGYRTASVIIALTDGELHED----------LFFYSER 128 (185)
T ss_dssp ---CHHHHHHHHHHHH-TCCCCSCCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCCHH----------HHHHHHH
T ss_pred ---CHHHHHHHHHHHh-hhcCCCCccHHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCCCC----------cccchHH
Confidence 4444544433332 33457999999999999986532 11 24578899999998761 1113456
Q ss_pred HHHHhccCCcEEEEEecccCCcccccccCC
Q 013900 260 SIVAASHYPLSIILVGVGDGPWDSVQQFDD 289 (434)
Q Consensus 260 aIv~AS~~PLSIIiVGVGd~~f~~m~~lD~ 289 (434)
++..+.+..+-|..||||+.+...|+++=+
T Consensus 129 ~~~~~~~~gi~i~~igvg~~~~~~L~~iA~ 158 (185)
T 3n2n_F 129 EANRSRDLGAIVYAVGVKDFNETQLARIAD 158 (185)
T ss_dssp HHHHHHHTTEEEEEEECSSCCHHHHTTTSS
T ss_pred HHHHHHHCCCEEEEEEeccCCHHHHHHHhC
Confidence 667777788999999999877777777654
No 66
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=97.85 E-value=5.4e-05 Score=69.04 Aligned_cols=140 Identities=17% Similarity=0.236 Sum_probs=96.2
Q ss_pred eeceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCCcceEeeCCCCCCCCcceecCCCCC
Q 013900 104 SSNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDEDNLIPCFGFGDASTHDQYVFSFYPDNH 183 (434)
Q Consensus 104 ~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~d~~ip~~GFGa~~~~~~~vf~~~~~~~ 183 (434)
.+++++.||-+.|=... +..++..+.|...+..++..+. +..+-++.|+.... .++.+..
T Consensus 11 ~~~iv~vlD~SgSM~~~-------------d~~~~r~~~ak~~~~~~~~~~~-~~~v~lv~F~~~~~---~~~~~~~--- 70 (218)
T 3ibs_A 11 GVEVIIALDISNSMLAQ-------------DVQPSRLEKAKRLISRLVDELD-NDKVGMIVFAGDAF---TQLPITS--- 70 (218)
T ss_dssp CCEEEEEEECSGGGGCC-------------SSSSCHHHHHHHHHHHHHHTCS-SCEEEEEEESSSEE---EEEEEES---
T ss_pred CCcEEEEEECCcCcccc-------------cCCcCHHHHHHHHHHHHHHhCC-CCeEEEEEECCCce---EeCCCCC---
Confidence 36899999999885432 1135788888888888888876 55899999987522 2344322
Q ss_pred CcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHccCccEEEEEEeCCcccCCCCCCCCCCChhHHHHHHHHHH
Q 013900 184 YCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEASNRQYHVLVIIADGQVTRNPDTPAGRLSPQEQATVNSIVA 263 (434)
Q Consensus 184 ~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~ 263 (434)
..+.+.+.-..+-+.....|.|++...|+.|.+........-.++|+||||..++. ...+++..
T Consensus 71 ---~~~~~~~~l~~l~~~~~~~g~T~l~~al~~a~~~l~~~~~~~~~ivllTDG~~~~~-------------~~~~~~~~ 134 (218)
T 3ibs_A 71 ---DYISAKMFLESISPSLISKQGTAIGEAINLATRSFTPQEGVGRAIIVITDGENHEG-------------GAVEAAKA 134 (218)
T ss_dssp ---CHHHHHHHHHTCCGGGCCSCSCCHHHHHHHHHTTSCSCSSCCEEEEEEECCTTCCS-------------CHHHHHHH
T ss_pred ---CHHHHHHHHHhcCcccCCCCCCcHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCC-------------cHHHHHHH
Confidence 34444443333333444579999999999998776544344578899999988751 24455556
Q ss_pred hccCCcEEEEEecccC
Q 013900 264 ASHYPLSIILVGVGDG 279 (434)
Q Consensus 264 AS~~PLSIIiVGVGd~ 279 (434)
+....+.|..||||+.
T Consensus 135 ~~~~~i~v~~igig~~ 150 (218)
T 3ibs_A 135 AAEKGIQVSVLGVGMP 150 (218)
T ss_dssp HHTTTEEEEEEEESCT
T ss_pred HHhcCCEEEEEEecCC
Confidence 6677899999999974
No 67
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.82 E-value=3.4e-06 Score=82.09 Aligned_cols=45 Identities=22% Similarity=0.488 Sum_probs=38.1
Q ss_pred cCCCCccCccccCCcc-cee-cCCCCCchhhhcCC------CCCCC--cCccccc
Q 013900 384 ALVEPVCPICLTNPKD-MAF-GCGHTTCKDCGTTI------SSCPM--CREPITT 428 (434)
Q Consensus 384 ~~e~~~CpICl~~~kd-v~l-~CGH~fC~~Ci~~l------~~CPl--CR~~i~~ 428 (434)
...++.||||+..+++ |.. .|||+||+.|+..+ ..||+ ||..+..
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 3567899999999999 875 99999999998743 36999 9998764
No 68
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=97.76 E-value=0.00034 Score=62.46 Aligned_cols=138 Identities=12% Similarity=0.100 Sum_probs=91.0
Q ss_pred eeceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---CCCcceEeeCCCCCCCCcceecCC
Q 013900 104 SSNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDE---DNLIPCFGFGDASTHDQYVFSFYP 180 (434)
Q Consensus 104 ~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~---d~~ip~~GFGa~~~~~~~vf~~~~ 180 (434)
.+++++.||-|.|=+ ...++++...+..++..|+. .-.+-++.|+.... .+|.|..
T Consensus 17 ~~divfvlD~SgSm~------------------~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~---~~~~l~~ 75 (178)
T 2xgg_A 17 QLDICFLIDSSGSIG------------------IQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVH---LQWDLQS 75 (178)
T ss_dssp CEEEEEEEECCTTTC------------------HHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEE---EEECTTS
T ss_pred CeeEEEEEECCCCCC------------------HHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceE---EEEeCCC
Confidence 489999999988742 13467777777777777763 35789999997632 2344432
Q ss_pred CCCCcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHc-----cCccEEEEEEeCCcccCCCCCCCCCCChhHH
Q 013900 181 DNHYCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEAS-----NRQYHVLVIIADGQVTRNPDTPAGRLSPQEQ 255 (434)
Q Consensus 181 ~~~~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~-----~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~ 255 (434)
.. ....+.++++-..+ + ...|.|+....|+.|.+..... ...-.++|+||||..++ ..
T Consensus 76 ~~--~~~~~~~~~~i~~l-~--~~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~~------------~~ 138 (178)
T 2xgg_A 76 PN--AVDKQLAAHAVLDM-P--YKKGSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESDS------------DF 138 (178)
T ss_dssp GG--GSCHHHHHHHHHHC-C--CCCCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCCH------------HH
T ss_pred CC--ccCHHHHHHHHHhC-C--CCCCCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCCC------------Cc
Confidence 11 12455555544332 2 1568999999999999875321 12357889999999876 22
Q ss_pred HHHHHHHHhccCCcEEEEEecccC
Q 013900 256 ATVNSIVAASHYPLSIILVGVGDG 279 (434)
Q Consensus 256 ~T~~aIv~AS~~PLSIIiVGVGd~ 279 (434)
...+++..+.+..+-|..||||+.
T Consensus 139 ~~~~~~~~l~~~gi~v~~igvG~~ 162 (178)
T 2xgg_A 139 RTVRAAKEIRELGGIVTVLAVGHY 162 (178)
T ss_dssp HHSHHHHHHHHTTCEEEEEECC--
T ss_pred cHHHHHHHHHHCCCEEEEEEcCCc
Confidence 345555555566899999999975
No 69
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=97.74 E-value=0.00013 Score=76.09 Aligned_cols=155 Identities=13% Similarity=0.167 Sum_probs=104.2
Q ss_pred ceeceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCCcceEeeCCCCCCCCcceecCCCC
Q 013900 103 ESSNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDEDNLIPCFGFGDASTHDQYVFSFYPDN 182 (434)
Q Consensus 103 ~~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~d~~ip~~GFGa~~~~~~~vf~~~~~~ 182 (434)
..+++++.||-|.|=.++ .+..+.|...+..++..+.++..|-++.|+.... .++++..
T Consensus 76 ~~~dvv~VLD~SGSM~~~----------------~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~---~~~p~t~-- 134 (464)
T 4fx5_A 76 SENVEVIIIDCSGSMDYP----------------RTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGAR---VVYPTGG-- 134 (464)
T ss_dssp CCEEEEEEEECCGGGGTT----------------THHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEE---EEESSSS--
T ss_pred CCceEEEEEEcCcccCCC----------------CchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceE---EEecCCc--
Confidence 448999999999875321 3667788888888888887777899999987532 1232210
Q ss_pred CCcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHccCccEEEEEEeCCcccCCCCCCCCCCChhHHHHHHHHH
Q 013900 183 HYCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEASNRQYHVLVIIADGQVTRNPDTPAGRLSPQEQATVNSIV 262 (434)
Q Consensus 183 ~~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv 262 (434)
.....-..-.+.-++.+..++..|-|++..-|+.|.+...+....-.++|+||||+.++. ....+....
T Consensus 135 ~l~~~~~~~~~~l~~~I~~L~~~GgT~l~~aL~~A~~~l~~~~~~~~~IILLTDG~~~~~-----------~~~~l~~~~ 203 (464)
T 4fx5_A 135 QLLRADYQSRAAAKEAVGRLHANGGTAMGRWLAQAGRIFDTAPSAIKHAILLTDGKDESE-----------TPADLARAI 203 (464)
T ss_dssp SCEECSHHHHHHHHHHHHTCCCCSCCCHHHHHHHHHHHHTTCTTSEEEEEEEESSCCTTS-----------CHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCCCC-----------ChHHHHHHH
Confidence 000001122333344566777889999999999999988765445578889999997751 123344455
Q ss_pred HhccCCcEEEEEecccC-CcccccccCC
Q 013900 263 AASHYPLSIILVGVGDG-PWDSVQQFDD 289 (434)
Q Consensus 263 ~AS~~PLSIIiVGVGd~-~f~~m~~lD~ 289 (434)
++....+.|..||||.. +.+.|+++-.
T Consensus 204 ~a~~~~i~i~tiGiG~~~d~~~L~~IA~ 231 (464)
T 4fx5_A 204 QSSIGNFTADCRGIGEDWEPKELRKIAD 231 (464)
T ss_dssp HHHTTTCEEEEEEESSSSCHHHHHHHHH
T ss_pred HHhcCCCeEEEEEeCCccCHHHHHHHHH
Confidence 56677899999999954 5566666643
No 70
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=97.73 E-value=8.8e-05 Score=67.59 Aligned_cols=158 Identities=14% Similarity=0.128 Sum_probs=94.4
Q ss_pred ceeceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCCcceEeeCCCCCCCCcceecCCCC
Q 013900 103 ESSNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDEDNLIPCFGFGDASTHDQYVFSFYPDN 182 (434)
Q Consensus 103 ~~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~d~~ip~~GFGa~~~~~~~vf~~~~~~ 182 (434)
+.+++++.||-+.|=.+. ......+++..+...|..++.+-.+-++.|+.... .++.+. .
T Consensus 14 ~~~div~vlD~SgSM~~~---------------~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~---~~~~~~--~ 73 (223)
T 1q0p_A 14 GSMNIYLVLDGSDSIGAS---------------NFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPK---IWVKVS--E 73 (223)
T ss_dssp -CEEEEEEEECSTTTCHH---------------HHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEE---EEECTT--S
T ss_pred CceeEEEEEeCCCCCchH---------------HHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccc---eeeccc--c
Confidence 348999999999874311 01223334444444455556667899999987632 223332 2
Q ss_pred CCcCCHHHHHHHHHHhcCCc-cccCCCChHHHHHHHHHHHHHcc--------CccEEEEEEeCCcccCCCCCCCCCCChh
Q 013900 183 HYCHGFEEVLARYREILPHL-KLSGPTSFAPIIDAAIDIVEASN--------RQYHVLVIIADGQVTRNPDTPAGRLSPQ 253 (434)
Q Consensus 183 ~~~~G~egvl~~Yr~~~~~v-~l~GPT~fapiI~~a~~~~~~~~--------~~Y~VLlIiTDG~i~d~~~~~~~~~~~~ 253 (434)
+.-...+.+.++-..+-+.. ...|-|+....|+.|.+...... ..-.++|+||||..+... +
T Consensus 74 ~~~~~~~~~~~~i~~l~~~~~~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~---------~ 144 (223)
T 1q0p_A 74 ADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGG---------D 144 (223)
T ss_dssp GGGGCHHHHHHHHHTCCTTSCSCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSS---------C
T ss_pred CCCCCHHHHHHHHHhcccccccCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCC---------C
Confidence 22234455555444332221 24699999999999998875321 345788999999887310 1
Q ss_pred HHHHHHHHHH----------hccCCcEEEEEeccc-CCcccccccCC
Q 013900 254 EQATVNSIVA----------ASHYPLSIILVGVGD-GPWDSVQQFDD 289 (434)
Q Consensus 254 ~~~T~~aIv~----------AS~~PLSIIiVGVGd-~~f~~m~~lD~ 289 (434)
.....+.+.+ +....+-|..||||+ .+...|+++=.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~igvG~~~~~~~L~~iA~ 191 (223)
T 1q0p_A 145 PITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALAS 191 (223)
T ss_dssp THHHHHHHHHHTTCSCBTTBCCGGGEEEEEEECSSCCCHHHHHHHSC
T ss_pred hHHHHHHHHHHHhhhhhhhhcccCCcEEEEEEecCcCCHHHHHHHhc
Confidence 2344455543 234578899999996 45556666644
No 71
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.72 E-value=1.8e-05 Score=63.68 Aligned_cols=48 Identities=19% Similarity=0.508 Sum_probs=37.6
Q ss_pred cCCCCccCccccCCcc---ceecCC-----CCCchhhhcCC------CCCCCcCcccccccc
Q 013900 384 ALVEPVCPICLTNPKD---MAFGCG-----HTTCKDCGTTI------SSCPMCREPITTRLR 431 (434)
Q Consensus 384 ~~e~~~CpICl~~~kd---v~l~CG-----H~fC~~Ci~~l------~~CPlCR~~i~~~i~ 431 (434)
..++..|.||++.+.+ +.++|. |.|+..|+..| ..||+||..+....+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~ 73 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETK 73 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcc
Confidence 3456789999976643 667996 99999999876 489999999865443
No 72
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.67 E-value=1.1e-05 Score=68.31 Aligned_cols=42 Identities=24% Similarity=0.383 Sum_probs=33.3
Q ss_pred CCCccCccccCCcc-------------------ceecCCCCCchhhhcCC----CCCCCcCcccc
Q 013900 386 VEPVCPICLTNPKD-------------------MAFGCGHTTCKDCGTTI----SSCPMCREPIT 427 (434)
Q Consensus 386 e~~~CpICl~~~kd-------------------v~l~CGH~fC~~Ci~~l----~~CPlCR~~i~ 427 (434)
++..|.||++.+.+ +.++|+|.||..|+..| ..||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 45689999987653 23699999999998864 68999999853
No 73
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.00039 Score=67.85 Aligned_cols=161 Identities=13% Similarity=0.170 Sum_probs=110.6
Q ss_pred eEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhccccc---CCCCCcceEeeCCCCCCCCcce-ecCCCC
Q 013900 107 LILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPF---DEDNLIPCFGFGDASTHDQYVF-SFYPDN 182 (434)
Q Consensus 107 livaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~y---D~d~~ip~~GFGa~~~~~~~vf-~~~~~~ 182 (434)
.+|.||-+.|=... +-.+|.++.+..++-.++..+ +....+-+..|+.... .|. ++.
T Consensus 6 tViviD~S~SM~~~-------------D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~---~vl~plT--- 66 (268)
T 4b4t_W 6 TVLVIDNSEYSRNG-------------DFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANP---RVLSTFT--- 66 (268)
T ss_dssp EEEEECCSSTTSST-------------TSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSC---EEEEEEE---
T ss_pred EEEEEECCHHHhCC-------------CCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcc---eeccCCc---
Confidence 58889999884311 114788887777776666643 4556788888865422 121 221
Q ss_pred CCcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHc--cCccEEEEEEeCCcccCCCCCCCCCCChhHHHHHHH
Q 013900 183 HYCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEAS--NRQYHVLVIIADGQVTRNPDTPAGRLSPQEQATVNS 260 (434)
Q Consensus 183 ~~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~--~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~a 260 (434)
.....++. .+..++..|-|++..-|+.|...++.. ...-..+||++||.+.+ +.++.+++
T Consensus 67 ---~D~~~il~----aL~~l~~~G~T~l~~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~-----------~~~~l~~l 128 (268)
T 4b4t_W 67 ---AEFGKILA----GLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISD-----------SRDELIRL 128 (268)
T ss_dssp ---SCHHHHHH----HHTTCCCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSS-----------CHHHHHHH
T ss_pred ---chHHHHHH----HhhhcCcCCCCChHHHHHHHHHHHHhcccCCCceEEEEEECCCCCC-----------CHHHHHHH
Confidence 23444544 567788999999999999999988753 33455667889998775 47888999
Q ss_pred HHHhccCCcEEEEEecccCCc--ccccccCCCCCcccccceeeeec
Q 013900 261 IVAASHYPLSIILVGVGDGPW--DSVQQFDDNIPQRAFDNFQFVNF 304 (434)
Q Consensus 261 Iv~AS~~PLSIIiVGVGd~~f--~~m~~lD~~~~~r~rDnvqFV~f 304 (434)
+.++.+.-++|=+||+|.+++ +.|+.|=+...+..-|+-+||..
T Consensus 129 ak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~~Ng~~~~~s~~v~v 174 (268)
T 4b4t_W 129 AKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTV 174 (268)
T ss_dssp HHHHHHHTEEEEEEEESSCCSSCCHHHHHHHHHCSSTTTSCEEEEE
T ss_pred HHHHHHcCCEEEEEEeCCCccchHHHHHHHHHhcCCCCCceeEEEe
Confidence 999999999999999997655 44666633222223478888875
No 74
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=97.59 E-value=0.0006 Score=62.92 Aligned_cols=133 Identities=20% Similarity=0.258 Sum_probs=89.2
Q ss_pred eeceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCCcceEeeCCCCCCCCcceecCC
Q 013900 104 SSNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFD---EDNLIPCFGFGDASTHDQYVFSFYP 180 (434)
Q Consensus 104 ~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD---~d~~ip~~GFGa~~~~~~~vf~~~~ 180 (434)
.+++++.||-+.|=. .++++...+..++..++ .+-.+-++.|+.... .++++.
T Consensus 22 ~~div~vlD~SgSM~--------------------~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~---~~~~l~- 77 (223)
T 2b2x_A 22 QLDIVIVLDGSNSIY--------------------PWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVT---HEFNLN- 77 (223)
T ss_dssp CEEEEEEEECSTTCC--------------------CHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEE---EEECTT-
T ss_pred cceEEEEEECCCChh--------------------hHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCcc---EEEecC-
Confidence 378999999987731 16777777777777775 567899999987532 234442
Q ss_pred CCCCcCCHHHHHHHHHHhcCCccc-cC-CCChHHHHHHHHHH-HHH----ccCccEEEEEEeCCcccCCCCCCCCCCChh
Q 013900 181 DNHYCHGFEEVLARYREILPHLKL-SG-PTSFAPIIDAAIDI-VEA----SNRQYHVLVIIADGQVTRNPDTPAGRLSPQ 253 (434)
Q Consensus 181 ~~~~~~G~egvl~~Yr~~~~~v~l-~G-PT~fapiI~~a~~~-~~~----~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~ 253 (434)
+ ....+.++++ +..+.. .| -|+....|+.|.+. ... ....-.++|+||||.-++.
T Consensus 78 -~--~~~~~~~~~~----i~~l~~~gG~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~~----------- 139 (223)
T 2b2x_A 78 -K--YSSTEEVLVA----ANKIVQRGGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHDN----------- 139 (223)
T ss_dssp -T--CCSHHHHHHH----HTTCCCCCCSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTTG-----------
T ss_pred -C--CCCHHHHHHH----HHhhhccCCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCC-----------
Confidence 1 1345555543 334443 45 49999999999875 221 1234578899999998861
Q ss_pred HHHHHHHHHHhccCCcEEEEEecccC
Q 013900 254 EQATVNSIVAASHYPLSIILVGVGDG 279 (434)
Q Consensus 254 ~~~T~~aIv~AS~~PLSIIiVGVGd~ 279 (434)
....+++..+....+-|..||||+.
T Consensus 140 -~~~~~~~~~~~~~gi~v~~igvG~~ 164 (223)
T 2b2x_A 140 -YRLKQVIQDCEDENIQRFSIAILGH 164 (223)
T ss_dssp -GGHHHHHHHHHTTTEEEEEEEECGG
T ss_pred -ccHHHHHHHHHHCCCEEEEEEecCc
Confidence 1234455555677899999999974
No 75
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=97.58 E-value=6.5e-05 Score=67.44 Aligned_cols=144 Identities=19% Similarity=0.285 Sum_probs=91.0
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhccccc-CCCCCcceEeeCCCCCCCCcceecCCCCC
Q 013900 105 SNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPF-DEDNLIPCFGFGDASTHDQYVFSFYPDNH 183 (434)
Q Consensus 105 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~y-D~d~~ip~~GFGa~~~~~~~vf~~~~~~~ 183 (434)
+++++.||-+.|=.. ..++.++..+-.++..+ ..+-.+-++.|+.... .++.+..
T Consensus 10 ~div~vlD~SgSM~~------------------~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~---~~~~~~~--- 65 (198)
T 1n3y_A 10 QDIVFLIDGSGSISS------------------RNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQ---THFTFEE--- 65 (198)
T ss_dssp EEEEEEEECCTTSCH------------------HHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEE---EEECHHH---
T ss_pred eeEEEEEECCCCCCH------------------HHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCcc---EEEecCc---
Confidence 789999999987531 23556777777777777 5777899999998632 2233311
Q ss_pred CcCCHHHHHHHHHHhcCCcc-ccCCCChHHHHHHHHHH-HHHc----cCccEEEEEEeCCccc-CCCCCCCCCCChhHHH
Q 013900 184 YCHGFEEVLARYREILPHLK-LSGPTSFAPIIDAAIDI-VEAS----NRQYHVLVIIADGQVT-RNPDTPAGRLSPQEQA 256 (434)
Q Consensus 184 ~~~G~egvl~~Yr~~~~~v~-l~GPT~fapiI~~a~~~-~~~~----~~~Y~VLlIiTDG~i~-d~~~~~~~~~~~~~~~ 256 (434)
... .+...+.+..+. ..|.|+....|+.|.+. .... ...-.++|+||||..+ +. ..
T Consensus 66 ----~~~-~~~~~~~i~~l~~~~g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~------------~~ 128 (198)
T 1n3y_A 66 ----FRR-SSNPLSLLASVHQLQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDS------------LD 128 (198)
T ss_dssp ----HHH-CSSGGGGGTTCCCCCSCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCS------------SC
T ss_pred ----cCC-HHHHHHHHhcCcCCCCCchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCCc------------cc
Confidence 000 011223344443 67899999999999844 3321 2346788999999887 31 11
Q ss_pred HHHHHHHhccCCcEEEEEecccCC-----cccccccCC
Q 013900 257 TVNSIVAASHYPLSIILVGVGDGP-----WDSVQQFDD 289 (434)
Q Consensus 257 T~~aIv~AS~~PLSIIiVGVGd~~-----f~~m~~lD~ 289 (434)
..+++..+....+-|..||||+.. ...|+.+=.
T Consensus 129 ~~~~~~~~~~~gi~i~~igvG~~~~~~~~~~~L~~iA~ 166 (198)
T 1n3y_A 129 YKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIAS 166 (198)
T ss_dssp HHHHHHHHHHTTCEEEEEEESGGGGSSTTHHHHHHHSC
T ss_pred HHHHHHHHHHCCCEEEEEEccccccccccHHHHHHHHc
Confidence 234445556678899999999864 445555443
No 76
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=97.57 E-value=0.00055 Score=62.61 Aligned_cols=133 Identities=18% Similarity=0.250 Sum_probs=88.3
Q ss_pred eeceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCCcceEeeCCCCCCCCcceecCC
Q 013900 104 SSNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFD---EDNLIPCFGFGDASTHDQYVFSFYP 180 (434)
Q Consensus 104 ~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD---~d~~ip~~GFGa~~~~~~~vf~~~~ 180 (434)
.+++++.||-+.|=. .++.+...+..++..++ .+-.+-++.|+.... .++++.
T Consensus 7 ~~div~vlD~SgSm~--------------------~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~---~~~~l~- 62 (213)
T 1pt6_A 7 QLDIVIVLDGSNSIY--------------------PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVT---HEFNLN- 62 (213)
T ss_dssp CEEEEEEEECCTTCC--------------------CHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEE---EEECTT-
T ss_pred CccEEEEEECCCChh--------------------hHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCcc---EEEecc-
Confidence 378999999987731 15666666777777665 677899999987532 234442
Q ss_pred CCCCcCCHHHHHHHHHHhcCCcc-ccC-CCChHHHHHHHHHHH-HH----ccCccEEEEEEeCCcccCCCCCCCCCCChh
Q 013900 181 DNHYCHGFEEVLARYREILPHLK-LSG-PTSFAPIIDAAIDIV-EA----SNRQYHVLVIIADGQVTRNPDTPAGRLSPQ 253 (434)
Q Consensus 181 ~~~~~~G~egvl~~Yr~~~~~v~-l~G-PT~fapiI~~a~~~~-~~----~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~ 253 (434)
+ ....+.++++-. .+. ..| -|+....|+.|.+.. .. ....-.++|+||||..++.
T Consensus 63 -~--~~~~~~~~~~i~----~l~~~~G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~----------- 124 (213)
T 1pt6_A 63 -K--YSSTEEVLVAAK----KIVQRGGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDN----------- 124 (213)
T ss_dssp -T--CSSHHHHHHHHH----TCCCCCCSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCS-----------
T ss_pred -c--cCCHHHHHHHHH----hccCCCCCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCC-----------
Confidence 1 234566655443 333 356 499999999998752 21 1234678899999988761
Q ss_pred HHHHHHHHHHhccCCcEEEEEecccC
Q 013900 254 EQATVNSIVAASHYPLSIILVGVGDG 279 (434)
Q Consensus 254 ~~~T~~aIv~AS~~PLSIIiVGVGd~ 279 (434)
....+++..+.+..+-|..||||+.
T Consensus 125 -~~~~~~~~~~~~~gi~i~~igig~~ 149 (213)
T 1pt6_A 125 -HRLKKVIQDCEDENIQRFSIAILGS 149 (213)
T ss_dssp -HHHHHHHHHHHHTTEEEEEEEECHH
T ss_pred -ccHHHHHHHHHHCCCEEEEEEeccc
Confidence 2344555555667899999999964
No 77
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=97.57 E-value=0.00024 Score=63.71 Aligned_cols=143 Identities=13% Similarity=0.192 Sum_probs=92.7
Q ss_pred eeceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCCcceEeeCCCCCCCCcceecCC
Q 013900 104 SSNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFD---EDNLIPCFGFGDASTHDQYVFSFYP 180 (434)
Q Consensus 104 ~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD---~d~~ip~~GFGa~~~~~~~vf~~~~ 180 (434)
.+++++.||-+.|=+ .+.++++...+..++..++ .+-.+-++.|+.... .+|+|+.
T Consensus 5 ~~div~vlD~SgSm~------------------~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~---~~~~l~~ 63 (189)
T 1atz_A 5 PLDVILLLDGSSSFP------------------ASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITT---IDVPWNV 63 (189)
T ss_dssp CEEEEEEEECSSSSC------------------HHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEE---EEECTTC
T ss_pred ceeEEEEEeCCCCCC------------------hhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcce---EEEecCC
Confidence 378999999987742 1456777777777777775 234688999987532 2344432
Q ss_pred CCCCcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHc-----cCccEEEEEEeCCcccCCCCCCCCCCChhHH
Q 013900 181 DNHYCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEAS-----NRQYHVLVIIADGQVTRNPDTPAGRLSPQEQ 255 (434)
Q Consensus 181 ~~~~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~-----~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~ 255 (434)
-...+.+.++-..+ +. ..|.|+....|+.|.+..... .+.-.++||||||..++. ..
T Consensus 64 ----~~~~~~~~~~i~~l-~~--~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~~~~~-----------~~ 125 (189)
T 1atz_A 64 ----VPEKAHLLSLVDVM-QR--EGGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVDS-----------VD 125 (189)
T ss_dssp ----CCCHHHHHHHHHTC-CC--CCCCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCSSC-----------CH
T ss_pred ----CCCHHHHHHHHHhC-cC--CCCcchHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCCCCch-----------HH
Confidence 13455565544432 21 368899999999999877542 123577888899977651 23
Q ss_pred HHHHHHHHhccCCcEEEEEeccc-CCcccccccC
Q 013900 256 ATVNSIVAASHYPLSIILVGVGD-GPWDSVQQFD 288 (434)
Q Consensus 256 ~T~~aIv~AS~~PLSIIiVGVGd-~~f~~m~~lD 288 (434)
+..+.+ ....+-|..||||+ .+-..|+.+=
T Consensus 126 ~~~~~~---~~~gi~v~~igvG~~~~~~~L~~iA 156 (189)
T 1atz_A 126 AAADAA---RSNRVTVFPIGIGDRYDAAQLRILA 156 (189)
T ss_dssp HHHHHH---HHTTEEEEEEEESSSSCHHHHHHHT
T ss_pred HHHHHH---HHCCCEEEEEEcCCcCCHHHHHHHH
Confidence 444444 45688999999998 3444555553
No 78
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.56 E-value=1.3e-05 Score=65.40 Aligned_cols=40 Identities=25% Similarity=0.527 Sum_probs=31.7
Q ss_pred CCCccCccccCCcc-ce--e-cCCCCCchhhhcC------------CCCCCC--cCcc
Q 013900 386 VEPVCPICLTNPKD-MA--F-GCGHTTCKDCGTT------------ISSCPM--CREP 425 (434)
Q Consensus 386 e~~~CpICl~~~kd-v~--l-~CGH~fC~~Ci~~------------l~~CPl--CR~~ 425 (434)
+...|+||++.+.. .. + +|||.||..|+.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 46789999998776 32 3 7999999999752 147999 9988
No 79
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=97.56 E-value=0.00019 Score=65.43 Aligned_cols=145 Identities=10% Similarity=0.134 Sum_probs=93.0
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCCcceEeeCCCCCCCCcceecCCC
Q 013900 105 SNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFD---EDNLIPCFGFGDASTHDQYVFSFYPD 181 (434)
Q Consensus 105 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD---~d~~ip~~GFGa~~~~~~~vf~~~~~ 181 (434)
+++++.||-+.|=+ ...++++...+..++..|+ ++-.+-+..|+.... .+|.|..-
T Consensus 14 ~divfvlD~SgSm~------------------~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~---~~~~l~~~ 72 (202)
T 1ijb_A 14 LDLVFLLDGSSRLS------------------EAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSH---AYIGLKDR 72 (202)
T ss_dssp EEEEEEEECBTTSC------------------HHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEE---EEECTTCC
T ss_pred ccEEEEEECCCCCC------------------HHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCce---EEEecCCC
Confidence 78999999987742 1356777777888888887 445789999987532 23444321
Q ss_pred CCCcCCHHHHHHHHHHhcCCccc-cC-CCChHHHHHHHHHHH-HHc--cCccEEEEEEeCCcccCCCCCCCCCCChhHHH
Q 013900 182 NHYCHGFEEVLARYREILPHLKL-SG-PTSFAPIIDAAIDIV-EAS--NRQYHVLVIIADGQVTRNPDTPAGRLSPQEQA 256 (434)
Q Consensus 182 ~~~~~G~egvl~~Yr~~~~~v~l-~G-PT~fapiI~~a~~~~-~~~--~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~ 256 (434)
...+.+.++- ..++. .| -|+....|+.|.+.. .+. ...-.++|+||||.-++. ..+.
T Consensus 73 ----~~~~~~~~~i----~~l~~~gg~~T~~~~aL~~a~~~~~~~~~r~~~~~~iillTDG~~~~~----------~~~~ 134 (202)
T 1ijb_A 73 ----KRPSELRRIA----SQVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQR----------MSRN 134 (202)
T ss_dssp ----CCHHHHHHHH----HTCCCCCBSCCCHHHHHHHHHHHTSSSCSCTTSEEEEEEEECCCCCGG----------GCTT
T ss_pred ----CCHHHHHHHH----HhCcCCCCCcCcHHHHHHHHHHHHhccCCCCCCCeEEEEEccCCCCcc----------chHH
Confidence 2344554443 33443 44 399999999987543 211 234578999999987641 0113
Q ss_pred HHHHHHHhccCCcEEEEEeccc-CCcccccccC
Q 013900 257 TVNSIVAASHYPLSIILVGVGD-GPWDSVQQFD 288 (434)
Q Consensus 257 T~~aIv~AS~~PLSIIiVGVGd-~~f~~m~~lD 288 (434)
..+++..+-+..+-|..||||+ .+.+.|+.+-
T Consensus 135 ~~~~a~~l~~~gi~i~~igvG~~~~~~~L~~iA 167 (202)
T 1ijb_A 135 FVRYVQGLKKKKVIVIPVGIGPHANLKQIRLIE 167 (202)
T ss_dssp HHHHHHHHHHTTEEEEEEEESTTSCHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEecCCcCCHHHHHHHh
Confidence 3444445556789999999996 4556666653
No 80
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.51 E-value=1.5e-05 Score=68.82 Aligned_cols=42 Identities=24% Similarity=0.383 Sum_probs=0.9
Q ss_pred CCCccCccccCCcc-------------------ceecCCCCCchhhhcCC----CCCCCcCcccc
Q 013900 386 VEPVCPICLTNPKD-------------------MAFGCGHTTCKDCGTTI----SSCPMCREPIT 427 (434)
Q Consensus 386 e~~~CpICl~~~kd-------------------v~l~CGH~fC~~Ci~~l----~~CPlCR~~i~ 427 (434)
++..|.||++.+.+ +.++|+|.||..|+..| ..||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 34689999987643 22489999999999876 57999999853
No 81
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=97.45 E-value=0.00044 Score=71.42 Aligned_cols=156 Identities=15% Similarity=0.216 Sum_probs=99.8
Q ss_pred ceeceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhccccc---CCCCCcceEeeCCCCCCCCcceecC
Q 013900 103 ESSNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPF---DEDNLIPCFGFGDASTHDQYVFSFY 179 (434)
Q Consensus 103 ~~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~y---D~d~~ip~~GFGa~~~~~~~vf~~~ 179 (434)
+.+++++.||-|.|=+ ...+++|.+.+..++..+ ..+-.+-++.|+.... .+|++.
T Consensus 8 ~~~divfvlD~SgSM~------------------~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~---~~~~l~ 66 (509)
T 2odp_A 8 GHLNLYLLLDASQSVS------------------ENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPK---VLMSVL 66 (509)
T ss_dssp SEEEEEEEEECSTTSC------------------HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEE---EEECTT
T ss_pred CCeeEEEEEeCCCccc------------------hhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCc---eeEecc
Confidence 4589999999998742 124566767666666665 6778899999987532 234332
Q ss_pred CCCCCcCCHHHHHHHHHHhcCCccc-cCCCChHHHHHHHHHHHHHcc-----------CccEEEEEEeCCcccCCCCCCC
Q 013900 180 PDNHYCHGFEEVLARYREILPHLKL-SGPTSFAPIIDAAIDIVEASN-----------RQYHVLVIIADGQVTRNPDTPA 247 (434)
Q Consensus 180 ~~~~~~~G~egvl~~Yr~~~~~v~l-~GPT~fapiI~~a~~~~~~~~-----------~~Y~VLlIiTDG~i~d~~~~~~ 247 (434)
.+.-...+.++++-..+-..... .|-|+....|+.|.+...... ..-.++++||||.-++..
T Consensus 67 --~~~~~~~~~~~~~l~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~---- 140 (509)
T 2odp_A 67 --NDNSRDMTEVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGG---- 140 (509)
T ss_dssp --SGGGGCHHHHHHHHHTCCGGGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSS----
T ss_pred --CCCCCCHHHHHHHHHhcccccCCCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCCC----
Confidence 11222455555543332221111 388999999999998764321 133788999999877521
Q ss_pred CCCChhHHHHHHHHHHh------ccCCcEEEEEeccc--CCcccccccCCC
Q 013900 248 GRLSPQEQATVNSIVAA------SHYPLSIILVGVGD--GPWDSVQQFDDN 290 (434)
Q Consensus 248 ~~~~~~~~~T~~aIv~A------S~~PLSIIiVGVGd--~~f~~m~~lD~~ 290 (434)
+..+..+.+.+. .+..+-|..||||+ .+...|+++-+.
T Consensus 141 -----~~~~~~~~~~~~~~~~~~~~~~i~i~~iGvG~~~~~~~~L~~iA~~ 186 (509)
T 2odp_A 141 -----SPKTAVDHIREILNINQKRNDYLDIYAIGVGKLDVDWRELNELGSK 186 (509)
T ss_dssp -----CTHHHHHHHHHHTTCCSTTGGGEEEEEEEESSSCCCHHHHHHHSCC
T ss_pred -----ChhHHHHHHHHHhhccccccCceEEEEEEcCCCcccHHHHHhhccC
Confidence 234555555542 26678899999998 577778777653
No 82
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=97.42 E-value=0.0016 Score=59.96 Aligned_cols=163 Identities=15% Similarity=0.198 Sum_probs=104.3
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhccccc---CCCCCcceEeeCCCCCCCCcceecCCCC
Q 013900 106 NLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPF---DEDNLIPCFGFGDASTHDQYVFSFYPDN 182 (434)
Q Consensus 106 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~y---D~d~~ip~~GFGa~~~~~~~vf~~~~~~ 182 (434)
.++++||.+.|=... +-.+|..+.|...+-.++..| .....+-+..|++...+ -+.++.
T Consensus 4 ~lvlvlD~S~SM~~~-------------D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~--~~~plT--- 65 (192)
T 2x5n_A 4 ATMILIDNSEWMING-------------DYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQ--VLSTLT--- 65 (192)
T ss_dssp EEEEEECCSGGGGCT-------------TSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCC--EEEEEE---
T ss_pred EEEEEEECCHhhccC-------------CCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcE--EecCCC---
Confidence 578999999874321 114789999988877766544 34567888889874221 112332
Q ss_pred CCcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHcc--Ccc-EEEEEEeCCcccCCCCCCCCCCChhHHHHHH
Q 013900 183 HYCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEASN--RQY-HVLVIIADGQVTRNPDTPAGRLSPQEQATVN 259 (434)
Q Consensus 183 ~~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~~--~~Y-~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~ 259 (434)
...+.++ +.+..+...|.|++..-|+.|.+..++.. ... .|+|+++|+. ++ +..+..+
T Consensus 66 ---~d~~~i~----~~L~~l~~~g~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~-~~-----------~~~~~~~ 126 (192)
T 2x5n_A 66 ---RDYGKFL----SAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPI-VE-----------DEKNLIR 126 (192)
T ss_dssp ---SCHHHHH----HHHTTCCCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCC-SS-----------CHHHHHH
T ss_pred ---CCHHHHH----HHHHcCCCCCCchHHHHHHHHHHHHHhccccCCCceEEEEEECCC-CC-----------CchhHHH
Confidence 2244443 34555788899999999999998887642 223 3445555543 32 2567778
Q ss_pred HHHHhccCCcEEEEEecccCCccc-ccccCCCCCcccccceeeeecccc
Q 013900 260 SIVAASHYPLSIILVGVGDGPWDS-VQQFDDNIPQRAFDNFQFVNFTKI 307 (434)
Q Consensus 260 aIv~AS~~PLSIIiVGVGd~~f~~-m~~lD~~~~~r~rDnvqFV~f~~~ 307 (434)
++..+.+..+.|.+||+|..+... |+.|=+... .-|+-+||...+-
T Consensus 127 ~a~~lk~~gi~v~~Ig~G~~~~~~~l~~la~~~n--~~~~s~~~~~~~~ 173 (192)
T 2x5n_A 127 LAKRMKKNNVAIDIIHIGELQNESALQHFIDAAN--SSDSCHLVSIPPS 173 (192)
T ss_dssp HHHHHHHTTEEEEEEEESCC---CHHHHHHHHHC--STTCCEEEEECCC
T ss_pred HHHHHHHCCCEEEEEEeCCCCccHHHHHHHHhcc--CCCceEEEEecCc
Confidence 888888899999999999886532 666643211 1378888865543
No 83
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=97.36 E-value=0.0016 Score=58.97 Aligned_cols=131 Identities=15% Similarity=0.202 Sum_probs=87.9
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCCcceEeeCCCCCCCCcceecCCC
Q 013900 105 SNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFD---EDNLIPCFGFGDASTHDQYVFSFYPD 181 (434)
Q Consensus 105 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD---~d~~ip~~GFGa~~~~~~~vf~~~~~ 181 (434)
+++++.||-+.|=. .++++...+..++..++ ++-.+-++.|+.... .+|+|.
T Consensus 7 ~div~vlD~SgSm~--------------------~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~---~~~~l~-- 61 (200)
T 1v7p_C 7 IDVVVVCDESNSIY--------------------PWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPR---VVFNLN-- 61 (200)
T ss_dssp EEEEEEEECCTTCC--------------------CHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEE---EEECTT--
T ss_pred ccEEEEEECCCCcc--------------------cHHHHHHHHHHHHHhcCCCCCceEEEEEEECCCce---EEEeCC--
Confidence 78999999987631 16677777777777776 567899999987532 245554
Q ss_pred CCCcCCHHHHHHHHHHhcCCccc-cC-CCChHHHHHHHHHH-HHHc----cCccEEEEEEeCCcccCCCCCCCCCCChhH
Q 013900 182 NHYCHGFEEVLARYREILPHLKL-SG-PTSFAPIIDAAIDI-VEAS----NRQYHVLVIIADGQVTRNPDTPAGRLSPQE 254 (434)
Q Consensus 182 ~~~~~G~egvl~~Yr~~~~~v~l-~G-PT~fapiI~~a~~~-~~~~----~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~ 254 (434)
+ ....+.++++-.. +.. .| -|+....|+.|.+. .... ...-.++|+||||..++.
T Consensus 62 ~--~~~~~~~~~~i~~----l~~~~G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~~------------ 123 (200)
T 1v7p_C 62 T--YKTKEEMIVATSQ----TSQYGGDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDG------------ 123 (200)
T ss_dssp T--CSSHHHHHHHHHH----CCCCCCSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCG------------
T ss_pred C--cCCHHHHHHHHHh----hhccCCCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCCc------------
Confidence 1 2356666665443 333 35 59999999999885 3221 134578899999998861
Q ss_pred HHHHHHHHHhccCCcEEEEEeccc
Q 013900 255 QATVNSIVAASHYPLSIILVGVGD 278 (434)
Q Consensus 255 ~~T~~aIv~AS~~PLSIIiVGVGd 278 (434)
....+++..+.+..+-|..||||+
T Consensus 124 ~~~~~~~~~~~~~gi~i~~igvg~ 147 (200)
T 1v7p_C 124 SMLKAVIDQCNHDNILRFGIAVLG 147 (200)
T ss_dssp GGHHHHHHHHHHTTEEEEEEEECH
T ss_pred ccHHHHHHHHHHCCCEEEEEEecc
Confidence 123344455556789999999964
No 84
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=97.28 E-value=4e-05 Score=68.60 Aligned_cols=150 Identities=13% Similarity=0.172 Sum_probs=88.8
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc-cCCCCCcceEeeCCCCCCCCcceecCCCCC
Q 013900 105 SNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSP-FDEDNLIPCFGFGDASTHDQYVFSFYPDNH 183 (434)
Q Consensus 105 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~-yD~d~~ip~~GFGa~~~~~~~vf~~~~~~~ 183 (434)
.++++.||-|.|=. | +..+.|...+..++.. +..+..+-++.|+.... ..++.+
T Consensus 6 ~~vv~vlD~SgSM~--~----------------~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~--~~~~~~----- 60 (189)
T 2x31_A 6 RVLIFAVDASGSAA--V----------------ARLSEAKGAVELLLGRAYAARDHVSLITFRGTAA--QVLLQP----- 60 (189)
T ss_dssp CEEEEEEECCTTSC--C------------------CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCC--CBCTTT-----
T ss_pred eEEEEEEECCCCCC--c----------------hHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCc--eEecCC-----
Confidence 57899999998842 1 2333444444444433 36667899999986321 112221
Q ss_pred CcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHcc--CccEEEEEEeCCcccCCCCCCCCCCChh----HHHH
Q 013900 184 YCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEASN--RQYHVLVIIADGQVTRNPDTPAGRLSPQ----EQAT 257 (434)
Q Consensus 184 ~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~~--~~Y~VLlIiTDG~i~d~~~~~~~~~~~~----~~~T 257 (434)
-...+.+.+ .+..+...|-|++...|+.|.+...+.. +.-.++|+||||..++..+. .+. .++.
T Consensus 61 -~~~~~~~~~----~i~~l~~~g~T~~~~al~~a~~~l~~~~~~~~~~~ivliTDG~~~~~~~~-----~~~~~~~~~~~ 130 (189)
T 2x31_A 61 -SRSLTQTKR----QLQGLPGGGGTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNIALDG-----TANRELAGEQA 130 (189)
T ss_dssp -CSCHHHHHH----HHHHCCCCBCCCCHHHHHHHHHHHHTCTTTCSSEEEEECCBSCCSSCCTH-----HHHHGGGTCCC
T ss_pred -CCCHHHHHH----HHhcCCCCCCCCHHHHHHHHHHHHHhccCCCCceEEEEECCCCCCCCCCc-----cccccchhHHH
Confidence 124555443 3344566799999999999999887542 23568889999988752100 000 0011
Q ss_pred HHHHHHhccCCcEEEEEecccCCcccccccCC
Q 013900 258 VNSIVAASHYPLSIILVGVGDGPWDSVQQFDD 289 (434)
Q Consensus 258 ~~aIv~AS~~PLSIIiVGVGd~~f~~m~~lD~ 289 (434)
.+++..+....+.|+.||+|+.+...|++|-.
T Consensus 131 ~~~~~~~~~~gi~v~~ig~g~~~~~~L~~iA~ 162 (189)
T 2x31_A 131 TKVARAIRASGMPAVIIDTAMRPNPALVDLAR 162 (189)
T ss_dssp EEEEECTGGGGSCCTHHHHHHSSCSSSCSTTT
T ss_pred HHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH
Confidence 12222333456788889999886666666643
No 85
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=97.27 E-value=0.00018 Score=64.70 Aligned_cols=144 Identities=17% Similarity=0.242 Sum_probs=90.0
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC-CCCcceEeeCCCCCCCCcceecCCCCC
Q 013900 105 SNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDE-DNLIPCFGFGDASTHDQYVFSFYPDNH 183 (434)
Q Consensus 105 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~-d~~ip~~GFGa~~~~~~~vf~~~~~~~ 183 (434)
+++++.||-+.|=+ ...++++...+..++..++. +-.+-++.|+.... .+|+|....
T Consensus 6 ~div~vlD~SgSm~------------------~~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~---~~~~l~~~~- 63 (194)
T 1mf7_A 6 SDIAFLIDGSGSII------------------PHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFR---IHFTFKEFQ- 63 (194)
T ss_dssp EEEEEEEECCTTSC------------------HHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEE---EEECHHHHH-
T ss_pred eeEEEEEeCCCCCC------------------HHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCce---EEEecCCcC-
Confidence 78999999987742 12466777777777777763 45799999987632 234442100
Q ss_pred CcCCHHHHHHHHHHhcCCcc-ccCCCChHHHHHHHHHHH-HH-cc---CccEEEEEEeCCccc-CCCCCCCCCCChhHHH
Q 013900 184 YCHGFEEVLARYREILPHLK-LSGPTSFAPIIDAAIDIV-EA-SN---RQYHVLVIIADGQVT-RNPDTPAGRLSPQEQA 256 (434)
Q Consensus 184 ~~~G~egvl~~Yr~~~~~v~-l~GPT~fapiI~~a~~~~-~~-~~---~~Y~VLlIiTDG~i~-d~~~~~~~~~~~~~~~ 256 (434)
.-..+ .+.+..++ ..|-|+....|+.|.+.. .. .+ ..-.++++||||..+ |.. .
T Consensus 64 ~~~~~-------~~~i~~l~~~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~d~~------------~ 124 (194)
T 1mf7_A 64 NNPNP-------RSLVKPITQLLGRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGDPL------------G 124 (194)
T ss_dssp HSCCH-------HHHHTTCCCCCSCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCBSCSS------------C
T ss_pred CHHHH-------HHHHHhCcCCCCCchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCch------------h
Confidence 00112 23344555 479999999999998643 21 11 235788999999987 421 1
Q ss_pred HHHHHHHhccCCcEEEEEecccCC-----cccccccCC
Q 013900 257 TVNSIVAASHYPLSIILVGVGDGP-----WDSVQQFDD 289 (434)
Q Consensus 257 T~~aIv~AS~~PLSIIiVGVGd~~-----f~~m~~lD~ 289 (434)
..+++.++-...+.|..||||+.. .+.|+++=+
T Consensus 125 ~~~~~~~~~~~gi~v~~igvG~~~~~~~~~~~L~~iA~ 162 (194)
T 1mf7_A 125 YEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNTIAS 162 (194)
T ss_dssp GGGTHHHHHHTTEEEEEEEESGGGCSHHHHHHHHHHSC
T ss_pred hHHHHHHHHHCCCEEEEEEecccccccccHHHHHHHhC
Confidence 223344445678999999999853 345555433
No 86
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.23 E-value=7e-05 Score=57.05 Aligned_cols=43 Identities=16% Similarity=0.226 Sum_probs=37.5
Q ss_pred CCccCccccCCcc-cee-cCCCCCchhhhcCC----CCCCCcCcccccc
Q 013900 387 EPVCPICLTNPKD-MAF-GCGHTTCKDCGTTI----SSCPMCREPITTR 429 (434)
Q Consensus 387 ~~~CpICl~~~kd-v~l-~CGH~fC~~Ci~~l----~~CPlCR~~i~~~ 429 (434)
.+.||||++.+.| +.. +|||.||+.|+.+| ..||+++.++...
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 3689999999999 888 99999999999876 4699999998654
No 87
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=97.15 E-value=0.0016 Score=66.79 Aligned_cols=153 Identities=15% Similarity=0.161 Sum_probs=97.4
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc---cCCCCCcceEeeCCCCCCCCcceecCCC
Q 013900 105 SNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSP---FDEDNLIPCFGFGDASTHDQYVFSFYPD 181 (434)
Q Consensus 105 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~---yD~d~~ip~~GFGa~~~~~~~vf~~~~~ 181 (434)
+++++.||-|.|=+ .+.++.|...+..++.. +..+-.+-++.|++... .++.+ .
T Consensus 2 ~div~vlD~SgSM~------------------~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~---~~~~~--~ 58 (497)
T 1rrk_A 2 MNIYLVLDGSDSIG------------------ASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPK---IWVKV--S 58 (497)
T ss_dssp EEEEEEEECSTTTC------------------HHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEE---EEECT--T
T ss_pred eeEEEEEECCCCcc------------------hhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCce---Eeecc--c
Confidence 68899999988742 14566666665555554 45567899999986532 22333 2
Q ss_pred CCCcCCHHHHHHHHHHhcCCc-cccCCCChHHHHHHHHHHHHHc--------cCccEEEEEEeCCcccCCCCCCCCCCCh
Q 013900 182 NHYCHGFEEVLARYREILPHL-KLSGPTSFAPIIDAAIDIVEAS--------NRQYHVLVIIADGQVTRNPDTPAGRLSP 252 (434)
Q Consensus 182 ~~~~~G~egvl~~Yr~~~~~v-~l~GPT~fapiI~~a~~~~~~~--------~~~Y~VLlIiTDG~i~d~~~~~~~~~~~ 252 (434)
.+.-...+.++++-..+-+.. ...|.|+....|+.|.+..... ...-.++++||||.-++..
T Consensus 59 ~~~~~~~~~~~~~l~~l~~~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~--------- 129 (497)
T 1rrk_A 59 EADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGG--------- 129 (497)
T ss_dssp SGGGGCHHHHHHHHHHCCGGGSCCTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSS---------
T ss_pred cccccCHHHHHHHHHhCcCccccccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCC---------
Confidence 233345666666655443322 2568899999999999887311 1235788999999887521
Q ss_pred hHHHHHHHHHHhc----------cCCcEEEEEeccc-CCcccccccCC
Q 013900 253 QEQATVNSIVAAS----------HYPLSIILVGVGD-GPWDSVQQFDD 289 (434)
Q Consensus 253 ~~~~T~~aIv~AS----------~~PLSIIiVGVGd-~~f~~m~~lD~ 289 (434)
+..+..+.+.+.. +..+-|..||||+ .+...|++|=+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~igvG~~~~~~~L~~iA~ 177 (497)
T 1rrk_A 130 DPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALAS 177 (497)
T ss_dssp CTHHHHHHHHHHTTCSSCC-CCCGGGEEEEEEECSSSCCHHHHHHHSC
T ss_pred ChhHHHHHHHHHhhhhcccccchhcCeeEEEecCCCccCHHHHHHHhc
Confidence 2355566665541 2278899999997 45566666654
No 88
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=96.99 E-value=0.0023 Score=68.94 Aligned_cols=150 Identities=15% Similarity=0.165 Sum_probs=94.2
Q ss_pred eeceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhccc---ccCCCCCcceEeeCCCCCCCCcceecCC
Q 013900 104 SSNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLS---PFDEDNLIPCFGFGDASTHDQYVFSFYP 180 (434)
Q Consensus 104 ~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~---~yD~d~~ip~~GFGa~~~~~~~vf~~~~ 180 (434)
.+++++.||-+.|=+ .+.+++|...+..++. .++..-.|-++-|+.... .++.|..
T Consensus 243 ~~div~vlD~SgSM~------------------~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~---~~~~l~~ 301 (741)
T 3hrz_D 243 SMNIYLVLDGSGSIG------------------ASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPK---IWVKVSE 301 (741)
T ss_dssp EEEEEEEEECSTTTC------------------HHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEE---EEECTTS
T ss_pred ceeEEEEeccCCccc------------------ccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCc---eeEeecc
Confidence 578999999887742 1234455555555544 444555689999987532 2344432
Q ss_pred CCCCcCCHHHHHHHHHHhcCCcc-----ccCCCChHHHHHHHHHHHHH--------ccCccEEEEEEeCCcccCCCCCCC
Q 013900 181 DNHYCHGFEEVLARYREILPHLK-----LSGPTSFAPIIDAAIDIVEA--------SNRQYHVLVIIADGQVTRNPDTPA 247 (434)
Q Consensus 181 ~~~~~~G~egvl~~Yr~~~~~v~-----l~GPT~fapiI~~a~~~~~~--------~~~~Y~VLlIiTDG~i~d~~~~~~ 247 (434)
. .-...+.++++ +..++ ..|-|+....|+.|.+.... ....-.|+|+||||+-+.-
T Consensus 302 ~--~~~~~~~~~~~----i~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g----- 370 (741)
T 3hrz_D 302 A--DSSNADWVTKQ----LNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMG----- 370 (741)
T ss_dssp G--GGGCHHHHHHH----HTTCCGGGGSSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSS-----
T ss_pred c--CCcCHHHHHHH----HHhcccccccCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccC-----
Confidence 1 11344555544 44555 68899999999999988621 0123578899999977641
Q ss_pred CCCChhHHHHHHHHHH----------hccCCcEEEEEeccc-CCcccccccCC
Q 013900 248 GRLSPQEQATVNSIVA----------ASHYPLSIILVGVGD-GPWDSVQQFDD 289 (434)
Q Consensus 248 ~~~~~~~~~T~~aIv~----------AS~~PLSIIiVGVGd-~~f~~m~~lD~ 289 (434)
. +....++.|.+ +.+..+.|..||||+ .+.+.|++|-.
T Consensus 371 -~---~p~~~~~~i~~~~~~~~~a~~~~~~gi~i~~igvG~~~~~~~L~~ia~ 419 (741)
T 3hrz_D 371 -G---DPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALAS 419 (741)
T ss_dssp -S---CTHHHHHHHHHHTTCSSCTTCCCGGGEEEEEEECSSSCCHHHHHHHSC
T ss_pred -C---CchHHHHHHHHHhhcccccccccccCeeEEEEeCCCcCCHHHHHHHhc
Confidence 1 23455565553 345678999999997 56666666654
No 89
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.79 E-value=0.00054 Score=57.44 Aligned_cols=41 Identities=29% Similarity=0.647 Sum_probs=33.9
Q ss_pred ccCccccCCcc--ceecCCCCCchhhhc-----CCCCCCCcCcccccc
Q 013900 389 VCPICLTNPKD--MAFGCGHTTCKDCGT-----TISSCPMCREPITTR 429 (434)
Q Consensus 389 ~CpICl~~~kd--v~l~CGH~fC~~Ci~-----~l~~CPlCR~~i~~~ 429 (434)
.|++|--.++. ...||.|.||.+|+. ..+.||.|+.++...
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 58999887777 556999999999984 457899999998653
No 90
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=96.57 E-value=0.002 Score=58.56 Aligned_cols=138 Identities=11% Similarity=0.207 Sum_probs=89.6
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCCcceEeeCCCCCCCCcceecCCC
Q 013900 105 SNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFD---EDNLIPCFGFGDASTHDQYVFSFYPD 181 (434)
Q Consensus 105 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD---~d~~ip~~GFGa~~~~~~~vf~~~~~ 181 (434)
+++++.||-+.|=+ .+.++++...+-.++..|+ ++-.|-+..|+.... .+|.|+.
T Consensus 22 ~DivfvlD~S~Sm~------------------~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~---~~~~l~~- 79 (199)
T 3zqk_A 22 LDVAFVLEGSDKIG------------------EADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVT---VEYPFSE- 79 (199)
T ss_dssp CEEEEEEECCTTTC------------------HHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEE---EEECTTS-
T ss_pred cCEEEEEECCCCCC------------------HHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCccc---EEEecCC-
Confidence 78999999886642 2456677777777777774 566799999987532 2345431
Q ss_pred CCCcCCHHHHHHHHHHhcCCccccCC-CChHHHHHHHHHHH-HH-cc---CccEEEEEEeCCcccCCCCCCCCCCChhHH
Q 013900 182 NHYCHGFEEVLARYREILPHLKLSGP-TSFAPIIDAAIDIV-EA-SN---RQYHVLVIIADGQVTRNPDTPAGRLSPQEQ 255 (434)
Q Consensus 182 ~~~~~G~egvl~~Yr~~~~~v~l~GP-T~fapiI~~a~~~~-~~-~~---~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~ 255 (434)
....+.++++-.++ + ...|. |+....|+.|.+.. .. .+ ..-.++|+||||...|.+. +
T Consensus 80 ---~~~~~~~~~~i~~l-~--~~gg~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~d~v~----~------ 143 (199)
T 3zqk_A 80 ---AQSKGDILQRLREI-R--YQGGNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPASDEIK----R------ 143 (199)
T ss_dssp ---CCCHHHHHHHHHHC-C--CCCCSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSCCSSCCC----C------
T ss_pred ---cCCHHHHHHHHHhC-c--CCCCCcChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCCCchHHH----H------
Confidence 23456666655442 2 13454 99999888887642 11 11 2347899999998776320 0
Q ss_pred HHHHHHHHhccCCcEEEEEecc-cCCcccccccCC
Q 013900 256 ATVNSIVAASHYPLSIILVGVG-DGPWDSVQQFDD 289 (434)
Q Consensus 256 ~T~~aIv~AS~~PLSIIiVGVG-d~~f~~m~~lD~ 289 (434)
+ ...+.|..|||| +.+.+.|+++=.
T Consensus 144 --------~-~~~v~v~~iGiG~~~~~~~L~~iA~ 169 (199)
T 3zqk_A 144 --------L-PGDIQVVPIGVGPNANVQELERIGW 169 (199)
T ss_dssp --------C-CTTEEEEEEEESTTCCHHHHHHHHT
T ss_pred --------H-hCCCEEEEEEcCCCCCHHHHHHHhC
Confidence 1 156889999999 667777777754
No 91
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.25 E-value=0.0019 Score=51.18 Aligned_cols=46 Identities=20% Similarity=0.437 Sum_probs=36.3
Q ss_pred CCCCccCccccCCcc-c-eecCCCCCchhhhcCC------CCCCCcCccccccc
Q 013900 385 LVEPVCPICLTNPKD-M-AFGCGHTTCKDCGTTI------SSCPMCREPITTRL 430 (434)
Q Consensus 385 ~e~~~CpICl~~~kd-v-~l~CGH~fC~~Ci~~l------~~CPlCR~~i~~~i 430 (434)
+....|.||...+.. . -..|+|.|...|+.+| ..||+||......+
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 445789999988765 2 2399999999999743 68999999876544
No 92
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=96.20 E-value=0.033 Score=59.75 Aligned_cols=153 Identities=12% Similarity=0.221 Sum_probs=98.2
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc---cCCCCCcceEeeCCCCCCC----Ccceec
Q 013900 106 NLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSP---FDEDNLIPCFGFGDASTHD----QYVFSF 178 (434)
Q Consensus 106 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~---yD~d~~ip~~GFGa~~~~~----~~vf~~ 178 (434)
.++++||.+.|=... . .+..+++.+.|++.|..+++. -.....|-++.||...+.. .+++-+
T Consensus 37 ~ivf~IDvS~SM~~~---d--------~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l~~d~i~v~ 105 (609)
T 1jey_A 37 SLIFLVDASKAMFES---Q--------SEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVL 105 (609)
T ss_dssp EEEEEEECSGGGGCC---C--------SSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCCTTEEEE
T ss_pred EEEEEEECCHHHcCC---C--------CCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcCCCCCeEEE
Confidence 589999998763211 0 022578999999999988875 3445689999999876421 233322
Q ss_pred CC-CCCCcCCHHHHHHH------------HHHhcCCccccCCCChHHHHHHHHHHHHHccCc--cEEEEEEeCCcccCCC
Q 013900 179 YP-DNHYCHGFEEVLAR------------YREILPHLKLSGPTSFAPIIDAAIDIVEASNRQ--YHVLVIIADGQVTRNP 243 (434)
Q Consensus 179 ~~-~~~~~~G~egvl~~------------Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~~~~--Y~VLlIiTDG~i~d~~ 243 (434)
.+ +.+ +.+ .+.. +...++. ...|.+...|-.|+++.+....+ =-++++||||.-.
T Consensus 106 ~~L~~~---~~~-~ik~l~~l~~~~~~~~~~~~~g~---~~~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p--- 175 (609)
T 1jey_A 106 QELDNP---GAK-RILELDQFKGQQGQKRFQDMMGH---GSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNP--- 175 (609)
T ss_dssp EEEECC---CHH-HHHHHHTTSHHHHHHHHHHHHCC---SCCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCT---
T ss_pred ecCCCC---CHH-HHHHHHHHhhcccchhhhhhcCC---CCCCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCC---
Confidence 21 111 222 1222 2222232 46799999999999988765333 3588899999553
Q ss_pred CCCCCCCChhHHHHHHHHHHhccCCcEEEEEecccCC-cc
Q 013900 244 DTPAGRLSPQEQATVNSIVAASHYPLSIILVGVGDGP-WD 282 (434)
Q Consensus 244 ~~~~~~~~~~~~~T~~aIv~AS~~PLSIIiVGVGd~~-f~ 282 (434)
++.-+..+.....++..+..+-+.|.+||||..+ |+
T Consensus 176 ---~~~~~~~~~~~~~~a~~l~~~gI~i~~igig~~~~fd 212 (609)
T 1jey_A 176 ---HGNDSAKASRARTKAGDLRDTGIFLDLMHLKKPGGFD 212 (609)
T ss_dssp ---TTTCHHHHHHHHHHHHHHHHHTEEEEEEEBCCTTCCC
T ss_pred ---CCCchHHHHHHHHHHHHHHhcCcEEEEEecCCCCccc
Confidence 1222222346777888888999999999999653 54
No 93
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=96.02 E-value=0.0086 Score=68.61 Aligned_cols=142 Identities=18% Similarity=0.277 Sum_probs=92.7
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCC-CCcceEeeCCCCCCCCcceecCC--C
Q 013900 105 SNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDED-NLIPCFGFGDASTHDQYVFSFYP--D 181 (434)
Q Consensus 105 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~d-~~ip~~GFGa~~~~~~~vf~~~~--~ 181 (434)
+++++.||-+.|=+ .+.++++...+..++..|+.+ -.|-+..|+.... .+|.|+. +
T Consensus 131 ~DIvfvlD~SgSm~------------------~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~---~~~~lt~~~~ 189 (1095)
T 3k6s_A 131 QDIVFLIDGSGSIS------------------SRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQ---THFTFEEFRR 189 (1095)
T ss_dssp EEEEEEEECCTTSC------------------SHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEE---EEECSHHHHS
T ss_pred ccEEEEEcCCCCCC------------------hhHHHHHHHHHHHHHHhccccccEEEEEEECCeEE---EEecCcccCC
Confidence 78888998876632 356788888888888888865 4788888987532 2344421 1
Q ss_pred CCCcCCHHHHHHHHHHhcCCc-cccCCCChHHHHHHHHHHHH-H-c---cCccEEEEEEeCCccc-CCCCCCCCCCChhH
Q 013900 182 NHYCHGFEEVLARYREILPHL-KLSGPTSFAPIIDAAIDIVE-A-S---NRQYHVLVIIADGQVT-RNPDTPAGRLSPQE 254 (434)
Q Consensus 182 ~~~~~G~egvl~~Yr~~~~~v-~l~GPT~fapiI~~a~~~~~-~-~---~~~Y~VLlIiTDG~i~-d~~~~~~~~~~~~~ 254 (434)
. ..+. +++..+ .+.|-|+.+..|+.|.+.+- + . ...-.|+|+||||..+ |.
T Consensus 190 ~---~~l~-------~ai~~i~~~gG~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~d~------------ 247 (1095)
T 3k6s_A 190 S---SNPL-------SLLASVHQLQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDS------------ 247 (1095)
T ss_dssp C---SCGG-------GGTTTCCCCCSCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBSCS------------
T ss_pred H---HHHH-------HHHhhhhcccCCChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcCCCc------------
Confidence 1 1111 223333 45789999999999987542 1 1 1235799999999985 31
Q ss_pred HHHHHHHHHhccCCcEEEEEecccC-----CcccccccCC
Q 013900 255 QATVNSIVAASHYPLSIILVGVGDG-----PWDSVQQFDD 289 (434)
Q Consensus 255 ~~T~~aIv~AS~~PLSIIiVGVGd~-----~f~~m~~lD~ 289 (434)
....+++.+|-..-+-|..||||+. +.+.|+++=+
T Consensus 248 ~~~~~~a~~~r~~GI~i~aIGVG~~~~~~~d~~eL~~IAs 287 (1095)
T 3k6s_A 248 LDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIAS 287 (1095)
T ss_dssp SCHHHHHHHHHHHCEEECCEEBSSGGGSTTSSHHHHTTSC
T ss_pred hhHHHHHHHHHHCCCEEEEEecccccccccCHHHHHHHHc
Confidence 2234444445555788999999987 6666666654
No 94
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=95.80 E-value=0.05 Score=48.25 Aligned_cols=130 Identities=15% Similarity=0.211 Sum_probs=80.2
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCC-CcceEeeCCCCCCCCcceecCCCCC
Q 013900 105 SNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDEDN-LIPCFGFGDASTHDQYVFSFYPDNH 183 (434)
Q Consensus 105 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~d~-~ip~~GFGa~~~~~~~vf~~~~~~~ 183 (434)
+++++.||-+.|=+ ...++++...+..++..++.++ .+-+..|+.... .+|+|+...
T Consensus 3 ~divfvlD~S~Sm~------------------~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~---~~~~l~~~~- 60 (179)
T 1mjn_A 3 VDLVFLFDGSMSLQ------------------PDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYK---TEFDFSDYV- 60 (179)
T ss_dssp EEEEEEEECBTTCC------------------HHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEE---EEECHHHHH-
T ss_pred ccEEEEEeCCCCCC------------------HHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCcee---EEEcCcccC-
Confidence 68899999987742 1346677777777777776554 799999987532 234442100
Q ss_pred CcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHH-HHHc----cCccEEEEEEeCCcccCCCCCCCCCCChhHHHHH
Q 013900 184 YCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDI-VEAS----NRQYHVLVIIADGQVTRNPDTPAGRLSPQEQATV 258 (434)
Q Consensus 184 ~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~-~~~~----~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~ 258 (434)
.-..++.++ ..++. +.|-|+....|+.|.+. .... .+.-.++++||||.-++... +
T Consensus 61 ~~~~~~~~~----~~i~~--~~g~T~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~~~~~-----~-------- 121 (179)
T 1mjn_A 61 KRKDPDALL----KHVKH--MLLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGN-----I-------- 121 (179)
T ss_dssp HHCCHHHHH----TTCCC--CCBCCCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCSSCSC-----C--------
T ss_pred CHHHHHHHH----Hhccc--CCCCChHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCCCCcc-----h--------
Confidence 001222222 22333 35889999999998863 2221 12457899999999886320 0
Q ss_pred HHHHHhccCCcEEEEEecccCC
Q 013900 259 NSIVAASHYPLSIILVGVGDGP 280 (434)
Q Consensus 259 ~aIv~AS~~PLSIIiVGVGd~~ 280 (434)
+...-+-|..||||+..
T Consensus 122 -----~~~~~i~i~~igvG~~~ 138 (179)
T 1mjn_A 122 -----DAAKDIIRYIIGIGKHF 138 (179)
T ss_dssp -----GGGTTSEEEEEEESGGG
T ss_pred -----HHHCCCEEEEEEccccc
Confidence 01345788899999753
No 95
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.68 E-value=0.0024 Score=64.53 Aligned_cols=44 Identities=25% Similarity=0.548 Sum_probs=34.4
Q ss_pred CCCccCccccCCcc---c------eecCCCCCchhhhcCC---------------CCCCCcCcccccc
Q 013900 386 VEPVCPICLTNPKD---M------AFGCGHTTCKDCGTTI---------------SSCPMCREPITTR 429 (434)
Q Consensus 386 e~~~CpICl~~~kd---v------~l~CGH~fC~~Ci~~l---------------~~CPlCR~~i~~~ 429 (434)
....|+||+....+ + ...|+|.|+..|+..| ..||.||.+++..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 45789999987654 1 2379999999998765 2599999998764
No 96
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=95.35 E-value=0.067 Score=56.75 Aligned_cols=146 Identities=15% Similarity=0.207 Sum_probs=94.6
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhccc---ccCCCCCcceEeeCCCCCCC--------C
Q 013900 105 SNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLS---PFDEDNLIPCFGFGDASTHD--------Q 173 (434)
Q Consensus 105 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~---~yD~d~~ip~~GFGa~~~~~--------~ 173 (434)
-.++++||.+.|=... . .+ .++..+.|...|..+++ .......|-++.||...+.. .
T Consensus 8 e~iv~~iDvS~SM~~~-------d----~~-~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d~~y~ 75 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNS-------I----PG-IESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQ 75 (565)
T ss_dssp EEEEEEEECCGGGGCC-------B----TT-BCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTTTCST
T ss_pred eEEEEEEECChHhccc-------C----CC-CCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccccccCCC
Confidence 3789999999773211 0 11 47899999999999888 35667789999999765321 1
Q ss_pred cceecCCCCCCcCCHHHHHHHHHHhcCCcccc-CCCChHHHHHHHHHHHHHc--cCcc--EEEEEEeCCcccCCCCCCCC
Q 013900 174 YVFSFYPDNHYCHGFEEVLARYREILPHLKLS-GPTSFAPIIDAAIDIVEAS--NRQY--HVLVIIADGQVTRNPDTPAG 248 (434)
Q Consensus 174 ~vf~~~~~~~~~~G~egvl~~Yr~~~~~v~l~-GPT~fapiI~~a~~~~~~~--~~~Y--~VLlIiTDG~i~d~~~~~~~ 248 (434)
+++-+.+-. .... .++....+ .+..+ +.|.+...|..|++..+.. ..++ -++++||||.-.- +
T Consensus 76 ~i~vl~~l~--~~~~-~~l~~l~~---~l~~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~------~ 143 (565)
T 1jey_B 76 NITVHRHLM--LPDF-DLLEDIES---KIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRF------S 143 (565)
T ss_dssp TEEEEEEEE--CCCH-HHHHHHHT---TCCCCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCC------C
T ss_pred ceEEeecCC--CCCH-HHHHHHHh---hccCCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCC------C
Confidence 222111100 0111 34433333 24443 6799999999999988765 3334 5788899996542 1
Q ss_pred CCChhHHHHHHHHHHhccCCcEEE-EEecccC
Q 013900 249 RLSPQEQATVNSIVAASHYPLSII-LVGVGDG 279 (434)
Q Consensus 249 ~~~~~~~~T~~aIv~AS~~PLSII-iVGVGd~ 279 (434)
.....+++..+.+.-+.|. +||+|..
T Consensus 144 -----~~~~~~~a~~l~~~gI~i~~vig~g~~ 170 (565)
T 1jey_B 144 -----KSQLDIIIHSLKKCDISLQFFLPFSLG 170 (565)
T ss_dssp -----CTTHHHHHHHHHHTTEEEEEEESSCCC
T ss_pred -----HHHHHHHHHHHHhcCcEEEEEeccCCC
Confidence 1245566777888899999 8999864
No 97
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=95.17 E-value=0.0086 Score=45.27 Aligned_cols=44 Identities=27% Similarity=0.526 Sum_probs=33.3
Q ss_pred CCCCccCccccCCcc-ceecCCC-----CCchhhhcCC------CCCCCcCccccc
Q 013900 385 LVEPVCPICLTNPKD-MAFGCGH-----TTCKDCGTTI------SSCPMCREPITT 428 (434)
Q Consensus 385 ~e~~~CpICl~~~kd-v~l~CGH-----~fC~~Ci~~l------~~CPlCR~~i~~ 428 (434)
++...|.||++...+ +..||.+ .|...|+.+| ..||+|+..+..
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 345789999976555 5568654 6999998865 579999998754
No 98
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=94.38 E-value=0.28 Score=51.59 Aligned_cols=139 Identities=13% Similarity=0.157 Sum_probs=82.0
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCCcceEeeCCCCCCCCcceecCCCCCC
Q 013900 105 SNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDEDNLIPCFGFGDASTHDQYVFSFYPDNHY 184 (434)
Q Consensus 105 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~d~~ip~~GFGa~~~~~~~vf~~~~~~~~ 184 (434)
.+++|.||-+.|=.... . ++ ... +.++.-.++-+.. -.+..+-++.|++... ...+.++
T Consensus 369 ~~v~lvvD~SgSM~~~~---~-~~-------~l~-~~~~Aa~l~~~~~--~~~d~vglv~Fs~~~~----~~~~t~~--- 427 (538)
T 1yvr_A 369 KRFLLAIDVSASMNQRV---L-GS-------ILN-ASVVAAAMCMLVA--RTEKDSHMVAFSDEML----PCPITVN--- 427 (538)
T ss_dssp CCEEEEEECSGGGGSBS---T-TS-------SCB-HHHHHHHHHHHHH--HHCSSEEEEEESSSEE----CCSCCTT---
T ss_pred ceEEEEEECccccCCCC---C-CC-------cHH-HHHHHHHHHHHHh--ccCCceEEEEECCCce----EcCCCCc---
Confidence 68999999998854320 0 11 122 3333122221111 1233588899986321 1122222
Q ss_pred cCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHccCccEEEEEEeCCcccCCCCCCCCCCChhHHHHHHHHHHh
Q 013900 185 CHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEASNRQYHVLVIIADGQVTRNPDTPAGRLSPQEQATVNSIVAA 264 (434)
Q Consensus 185 ~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~A 264 (434)
.++..+++.-. .+ ..|-|+++..|..+.+. ....-++||||||..+. |..+ ..+.++.+.+.
T Consensus 428 -~~l~~~l~~l~----~~-~~GgT~i~~aL~~a~~~----~~~~~~iIliTDg~~~~------g~~~--~~~~l~~~~~~ 489 (538)
T 1yvr_A 428 -MLLHEVVEKMS----DI-TMGSTDCALPMLWAQKT----NTAADIFIVFTDCETNV------EDVH--PATALKQYREK 489 (538)
T ss_dssp -SCHHHHHHHHT----TC-CCSCCCTTHHHHHHHHT----TCCCSEEEEEECCCCCS------SSCC--HHHHHHHHHHH
T ss_pred -ccHHHHHHHHh----cC-CCCCCcHHHHHHHHHhc----cCCCCEEEEEcCCCCCC------CCCC--HHHHHHHHHHH
Confidence 34666655433 22 57889999999888764 23457889999998764 1112 24556666766
Q ss_pred ccCCcEEEEEecccCCcc
Q 013900 265 SHYPLSIILVGVGDGPWD 282 (434)
Q Consensus 265 S~~PLSIIiVGVGd~~f~ 282 (434)
.+.++.+++||||.....
T Consensus 490 ~~~~v~l~~igig~~~~~ 507 (538)
T 1yvr_A 490 MGIPAKLIVCAMTSNGFS 507 (538)
T ss_dssp HTCCCEEEEEECSSSSEE
T ss_pred hCCCcEEEEEEecCCCCc
Confidence 678899999999986543
No 99
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.11 E-value=0.039 Score=45.70 Aligned_cols=50 Identities=32% Similarity=0.670 Sum_probs=39.7
Q ss_pred ccCCCCccCccccCCccceecCCCCCchhhhcCC----CCCCCcCccccccccc
Q 013900 383 TALVEPVCPICLTNPKDMAFGCGHTTCKDCGTTI----SSCPMCREPITTRLRL 432 (434)
Q Consensus 383 ~~~e~~~CpICl~~~kdv~l~CGH~fC~~Ci~~l----~~CPlCR~~i~~~i~l 432 (434)
+......|..|+...+.++.-.-|.+|..|+..+ ..||+|..++.+++++
T Consensus 24 s~~G~~nCKsCWf~~k~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 24 THLGPQFCKSCWFENKGLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCSCCCCCCSSCSCCSSEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred cccCcccChhhccccCCeeeecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 4456689999997777655555688999998743 6899999999998875
No 100
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=92.97 E-value=0.64 Score=49.00 Aligned_cols=139 Identities=15% Similarity=0.164 Sum_probs=83.0
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCCcceEeeCCCCCCCCcceecCCCCCC
Q 013900 105 SNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDEDNLIPCFGFGDASTHDQYVFSFYPDNHY 184 (434)
Q Consensus 105 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~d~~ip~~GFGa~~~~~~~vf~~~~~~~~ 184 (434)
.+++|+||-++|=.+.+ ... ....+..+.| ..++-++..-+ ..+-++.|++.... + .+.++
T Consensus 363 ~~~lv~vDvSgSM~~~~-------~~~--~~k~~~~e~A-a~la~~~~r~~--d~v~lv~Fs~~~~~---~-~~~~~--- 423 (535)
T 2nvo_A 363 TRHLLALDVSGSMTCGD-------VAG--VPGLTPNMAA-AAMSLIALRTE--PDALTMGFAEQFRP---L-GITPR--- 423 (535)
T ss_dssp SEEEEEECCSGGGGSCC-------GGG--CTTCCHHHHH-HHHHHHHHHHS--SEEEEEEEBSSEEE---C-CCCTT---
T ss_pred ceEEEEEECCccccCCC-------CCC--CCcccHHHHH-HHHHHHHcCcC--CceEEEEECCcceE---c-CCCcc---
Confidence 67899999998853210 000 1124544444 34443333322 25888899874211 1 12221
Q ss_pred cCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHccCccEEEEEEeCCcccCCCCCCCCCCChhHHHHHHHHHHh
Q 013900 185 CHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEASNRQYHVLVIIADGQVTRNPDTPAGRLSPQEQATVNSIVAA 264 (434)
Q Consensus 185 ~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~A 264 (434)
.++.++++. +... ..|.|+++..|+.+.+ .....-+++|||||+... |..++ .+.++...+.
T Consensus 424 -~~l~~~l~~---l~~~--~~ggTdi~~~l~~a~~----~~~~~~~vIliTD~~~~~------g~~~~--~~al~~~r~~ 485 (535)
T 2nvo_A 424 -DTLESAMQK---AQSV--SFGGTDCAQPILWAAQ----ERLDVDTFVVYTDNETWA------GQVHP--TVALDQYAQK 485 (535)
T ss_dssp -CCHHHHHHH---TCCS--SBCCCCTTHHHHHHHH----TTCCCSEEEEEESSCCCC------CSSCH--HHHHHHHHHH
T ss_pred -hhHHHHHHH---HhhC--CCCCccHHHHHHHHHH----hcCCCCEEEEEeCCCccC------CCCCH--HHHHHHHHHh
Confidence 456555543 3222 3689999998877643 234567889999998764 22233 3466666666
Q ss_pred ccCCcEEEEEecccCC
Q 013900 265 SHYPLSIILVGVGDGP 280 (434)
Q Consensus 265 S~~PLSIIiVGVGd~~ 280 (434)
.+.++-+|+||||...
T Consensus 486 ~~~~~klv~i~l~~~~ 501 (535)
T 2nvo_A 486 MGRAPKLIVVGLTATE 501 (535)
T ss_dssp HSCCCEEEEEETTCSC
T ss_pred hCCCCeEEEEeccCCC
Confidence 6779999999999864
No 101
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=89.85 E-value=0.1 Score=42.37 Aligned_cols=30 Identities=20% Similarity=0.654 Sum_probs=24.3
Q ss_pred CCCccCccccC-Ccc-ce--ecCCCCCchhhhcC
Q 013900 386 VEPVCPICLTN-PKD-MA--FGCGHTTCKDCGTT 415 (434)
Q Consensus 386 e~~~CpICl~~-~kd-v~--l~CGH~fC~~Ci~~ 415 (434)
++..|+||.+. +.+ +. +.|+|.||..|+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 45799999975 455 55 79999999999874
No 102
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=78.66 E-value=0.8 Score=43.55 Aligned_cols=43 Identities=21% Similarity=0.476 Sum_probs=33.2
Q ss_pred CCccCccccCCcc-c-eecCCCCCchhhhcCC------CCCCCcCcccccc
Q 013900 387 EPVCPICLTNPKD-M-AFGCGHTTCKDCGTTI------SSCPMCREPITTR 429 (434)
Q Consensus 387 ~~~CpICl~~~kd-v-~l~CGH~fC~~Ci~~l------~~CPlCR~~i~~~ 429 (434)
...|.+|.+.... . .-.|+|.|...|+..+ ..||.|+......
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 5689999987765 2 2259999999998643 4899999886543
No 103
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=72.26 E-value=2 Score=34.63 Aligned_cols=31 Identities=29% Similarity=0.646 Sum_probs=24.0
Q ss_pred cCCCCccCccccCCcccee-cC----CCCCchhhhc
Q 013900 384 ALVEPVCPICLTNPKDMAF-GC----GHTTCKDCGT 414 (434)
Q Consensus 384 ~~e~~~CpICl~~~kdv~l-~C----GH~fC~~Ci~ 414 (434)
....+.|.+|.+.+.|..| .| +|.||..|.+
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr 47 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSR 47 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHH
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccH
Confidence 3456899999999998444 55 5889999965
No 104
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=69.09 E-value=3.2 Score=39.70 Aligned_cols=42 Identities=19% Similarity=0.338 Sum_probs=28.2
Q ss_pred ccEEEEEEeCCcccCCCCCCCCCCChhHHHHHHHHHHhccCCcEEEEEecccCC
Q 013900 227 QYHVLVIIADGQVTRNPDTPAGRLSPQEQATVNSIVAASHYPLSIILVGVGDGP 280 (434)
Q Consensus 227 ~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~AS~~PLSIIiVGVGd~~ 280 (434)
.--++++||||.-+- |. .| .++...|...-+-|-.||||+.+
T Consensus 9 ~~k~iillTDG~~~~------g~-~p-----~~aa~~a~~~gi~v~tIGig~~~ 50 (242)
T 3rag_A 9 TIRQILVITDGCSNI------GP-DP-----VEAARRAHRHGIVVNVIGIVGRG 50 (242)
T ss_dssp CEEEEEEEESSCCCS------SS-CH-----HHHHHHHHHTTCEEEEEEECCSS
T ss_pred CccEEEEEccCCCCC------CC-CH-----HHHHHHHHHCCCEEEEEEecCCc
Confidence 456789999998653 11 22 33334566677999999998764
No 105
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=64.35 E-value=18 Score=33.62 Aligned_cols=108 Identities=16% Similarity=0.169 Sum_probs=59.1
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCCcceEeeCCCCCCCCcceecCCCCCC
Q 013900 105 SNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDEDNLIPCFGFGDASTHDQYVFSFYPDNHY 184 (434)
Q Consensus 105 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~d~~ip~~GFGa~~~~~~~vf~~~~~~~~ 184 (434)
+.|.+.+|+|.|=+. ....-+..+..|.+-|+.+..+-.|-+-+|-++. ..+++.|..
T Consensus 4 vDl~fl~D~S~SM~~----------------di~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk~--~~~~l~lT~---- 61 (212)
T 2iue_A 4 VDLYFLMGLSGSAQG----------------HLSNVQTLGSDLLKALNEISRSGRIGFGSIVNMT--FQHILKLTA---- 61 (212)
T ss_dssp EEEEEEEECCGGGTT----------------THHHHHHHHHHHHHHHHHHCSCEEEEEEEESSSC--EEEEEEEES----
T ss_pred eEEEEEEeCCCcchh----------------HHHHHHHHHHHHHHHHHhhCcCceEEEEEEEcCc--ceecCCcCC----
Confidence 678999999988532 2355666677777777777666554433344541 122333321
Q ss_pred cCCHHHHHHHHHHhcCCccccC----CCC-hHHHHHHHHHHHH--HccCccEEEEEEeCCcccC
Q 013900 185 CHGFEEVLARYREILPHLKLSG----PTS-FAPIIDAAIDIVE--ASNRQYHVLVIIADGQVTR 241 (434)
Q Consensus 185 ~~G~egvl~~Yr~~~~~v~l~G----PT~-fapiI~~a~~~~~--~~~~~Y~VLlIiTDG~i~d 241 (434)
.++ .+.+.+.+.+.+| |-. |.-+++.+....+ =.. .-++||++||+..+.
T Consensus 62 --d~~----~F~~~v~~~~vsg~~D~PE~g~dal~qa~~c~~~i~Wr~-a~rllvl~TDa~~H~ 118 (212)
T 2iue_A 62 --DSS----QFQRELRKQLVSGKLATPKGQLDAVVQVAICLGEIGWRN-GTRFLVLVTDNDFHL 118 (212)
T ss_dssp --CHH----HHHHHHHTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEECSSCBCC
T ss_pred --CHH----HHHHHHhhccccCCCCCCchHHHHHHHHHHhhhhcccCC-ccEEEEEECcCCccc
Confidence 222 3344444566665 433 3333333321111 112 569999999998765
No 106
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=63.34 E-value=32 Score=38.61 Aligned_cols=40 Identities=23% Similarity=0.202 Sum_probs=30.6
Q ss_pred ccccCCCChHHHHHHHHHHHHH-c-cCccEEEEEEeCCcccC
Q 013900 202 LKLSGPTSFAPIIDAAIDIVEA-S-NRQYHVLVIIADGQVTR 241 (434)
Q Consensus 202 v~l~GPT~fapiI~~a~~~~~~-~-~~~Y~VLlIiTDG~i~d 241 (434)
+...|-|+...-|+.|+++.++ . ...=-++|+||||+-+.
T Consensus 351 l~~~GGT~i~~AL~~A~~lL~~~~~~~~~kvIILLTDG~pt~ 392 (893)
T 2ww8_A 351 MYQFGATFTQKALMKADEILTQQARQNSQKVIFHITDGVPTM 392 (893)
T ss_dssp GGGGCSCCHHHHHHHHHHHHHHHSCSSSEEEEEEEESSCCSE
T ss_pred cccCCCChHHHHHHHHHHHHHhhcccCCCeEEEEEcCCCCCc
Confidence 4457889999999999998864 2 13346788999998775
No 107
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=37.88 E-value=20 Score=26.89 Aligned_cols=35 Identities=34% Similarity=0.771 Sum_probs=26.6
Q ss_pred CccCccccCCcc-c---eecCCCCCchhhhc----CCCCCCCc
Q 013900 388 PVCPICLTNPKD-M---AFGCGHTTCKDCGT----TISSCPMC 422 (434)
Q Consensus 388 ~~CpICl~~~kd-v---~l~CGH~fC~~Ci~----~l~~CPlC 422 (434)
..|-.|+..+.+ . --.|++.||.+|-. .+-.||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 469999988766 2 23899999999954 45789988
No 108
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=37.51 E-value=18 Score=36.56 Aligned_cols=41 Identities=32% Similarity=0.578 Sum_probs=30.9
Q ss_pred CCccCccccCCcc-cee-cCCCCCchhhh--------cCCCCCCCcCcccc
Q 013900 387 EPVCPICLTNPKD-MAF-GCGHTTCKDCG--------TTISSCPMCREPIT 427 (434)
Q Consensus 387 ~~~CpICl~~~kd-v~l-~CGH~fC~~Ci--------~~l~~CPlCR~~i~ 427 (434)
.+.||+-...++. +.. .|.|.-|.+-. .....||+|...+.
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 4799999988877 554 89998766542 24578999988764
No 109
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=34.39 E-value=15 Score=27.46 Aligned_cols=30 Identities=23% Similarity=0.478 Sum_probs=17.0
Q ss_pred CCccCccccCCcc------ceec---CCCCCchhhhcCC
Q 013900 387 EPVCPICLTNPKD------MAFG---CGHTTCKDCGTTI 416 (434)
Q Consensus 387 ~~~CpICl~~~kd------v~l~---CGH~fC~~Ci~~l 416 (434)
...||-|...... |+-. |++.||..|+..+
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~ 44 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPW 44 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCS
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCc
Confidence 3579999866543 2222 5555666555543
No 110
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=32.62 E-value=25 Score=35.46 Aligned_cols=41 Identities=22% Similarity=0.504 Sum_probs=30.8
Q ss_pred CCccCccccCCcc-cee-cCCCCCchhhh--------cCCCCCCCcCcccc
Q 013900 387 EPVCPICLTNPKD-MAF-GCGHTTCKDCG--------TTISSCPMCREPIT 427 (434)
Q Consensus 387 ~~~CpICl~~~kd-v~l-~CGH~fC~~Ci--------~~l~~CPlCR~~i~ 427 (434)
.+.||+-...++. +.. .|.|.-|.+-. .....||+|.+.+.
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 4799999888877 444 89998766542 24578999998875
No 111
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=29.25 E-value=14 Score=36.38 Aligned_cols=41 Identities=27% Similarity=0.618 Sum_probs=29.5
Q ss_pred CCCCccCccccCCcc-cee----cCC--CCCchhhhcCC----CCCCCcCcc
Q 013900 385 LVEPVCPICLTNPKD-MAF----GCG--HTTCKDCGTTI----SSCPMCREP 425 (434)
Q Consensus 385 ~e~~~CpICl~~~kd-v~l----~CG--H~fC~~Ci~~l----~~CPlCR~~ 425 (434)
.....||||-..+.- +.. .=| +..|..|...| ..||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 456799999988766 322 133 44899998766 579999875
No 112
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=27.97 E-value=8.1 Score=34.32 Aligned_cols=38 Identities=26% Similarity=0.571 Sum_probs=27.2
Q ss_pred CCccCccccCCcc------ceecCCCCCchhhhcC-----CCCCCCcCc
Q 013900 387 EPVCPICLTNPKD------MAFGCGHTTCKDCGTT-----ISSCPMCRE 424 (434)
Q Consensus 387 ~~~CpICl~~~kd------v~l~CGH~fC~~Ci~~-----l~~CPlCR~ 424 (434)
+..|.+|...+.- +-..|.|.+|..|... ...|-+|+.
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSSSSSCEEHHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhcccccccCCCCcEeeHHHHH
Confidence 4689999986532 3348999999999753 356777754
No 113
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=27.61 E-value=21 Score=30.37 Aligned_cols=38 Identities=24% Similarity=0.777 Sum_probs=24.8
Q ss_pred CCCccCccccCCcc-----ceecCCCCCchhhhcCC----CCCCCcC
Q 013900 386 VEPVCPICLTNPKD-----MAFGCGHTTCKDCGTTI----SSCPMCR 423 (434)
Q Consensus 386 e~~~CpICl~~~kd-----v~l~CGH~fC~~Ci~~l----~~CPlCR 423 (434)
+...|..|...|.- --..||..||..|.... ..|-.|-
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~ 64 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQ 64 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHH
Confidence 34689999876643 22389999999996642 4455553
No 114
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=27.52 E-value=33 Score=31.80 Aligned_cols=29 Identities=21% Similarity=0.486 Sum_probs=21.3
Q ss_pred CCCccCccccCCcc-----ceecCCCCCchhhhc
Q 013900 386 VEPVCPICLTNPKD-----MAFGCGHTTCKDCGT 414 (434)
Q Consensus 386 e~~~CpICl~~~kd-----v~l~CGH~fC~~Ci~ 414 (434)
+...|.+|...|.- -.-.||..||..|..
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~ 196 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSS 196 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCC
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcC
Confidence 34589999976643 223899999999964
No 115
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=27.32 E-value=57 Score=26.61 Aligned_cols=41 Identities=27% Similarity=0.747 Sum_probs=29.5
Q ss_pred CCccCccccCCc---c--c--e-ecCCCCCchhhhc-----CCCCCCCcCcccc
Q 013900 387 EPVCPICLTNPK---D--M--A-FGCGHTTCKDCGT-----TISSCPMCREPIT 427 (434)
Q Consensus 387 ~~~CpICl~~~k---d--v--~-l~CGH~fC~~Ci~-----~l~~CPlCR~~i~ 427 (434)
.+.|.||-+..- + + + -.|+--.|+.|.. ....||-|..+..
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 479999997632 1 1 1 2677778999975 3578999998875
No 116
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=25.81 E-value=24 Score=26.91 Aligned_cols=44 Identities=23% Similarity=0.357 Sum_probs=30.1
Q ss_pred CCCccCccccCCcc--cee--cCCCCCchhhhcC--------CCCCCCcCcccccc
Q 013900 386 VEPVCPICLTNPKD--MAF--GCGHTTCKDCGTT--------ISSCPMCREPITTR 429 (434)
Q Consensus 386 e~~~CpICl~~~kd--v~l--~CGH~fC~~Ci~~--------l~~CPlCR~~i~~~ 429 (434)
+...|++|...... |.. .|...|...|+.- ...||.|+..+.++
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence 44679999865433 444 7777788999752 25799998776543
No 117
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=25.23 E-value=1.8e+02 Score=27.49 Aligned_cols=92 Identities=16% Similarity=0.220 Sum_probs=55.4
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCCcceEeeCCCCCCCCcce-ecCCCCC
Q 013900 105 SNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDEDNLIPCFGFGDASTHDQYVF-SFYPDNH 183 (434)
Q Consensus 105 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~d~~ip~~GFGa~~~~~~~vf-~~~~~~~ 183 (434)
+.+++-||-+.|=. +....-..|+..+..-+..+-....|-++.|+........+. .|...
T Consensus 135 ~~vvfLVDtSgSM~----------------~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~~~~ll~pfT~~-- 196 (242)
T 3rag_A 135 LHLVVCLDTSASMR----------------DKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEATRLVQPFSSE-- 196 (242)
T ss_dssp EEEEEEEECSGGGT----------------TTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTCSCEEEEEEESS--
T ss_pred CCEEEEEECcccHH----------------HHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCccceeecCCCCCh--
Confidence 68899999887742 112333444444444333343567899999998632221122 33221
Q ss_pred CcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHH
Q 013900 184 YCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEA 223 (434)
Q Consensus 184 ~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~ 223 (434)
. -++ +.++.++..|-|...+-|+.|.++.++
T Consensus 197 -~-~~~-------~~l~~L~agG~Tplg~AL~~A~~~~~~ 227 (242)
T 3rag_A 197 -V-NVA-------ALEAELVARGGTPTGPAIDHAADLLLS 227 (242)
T ss_dssp -C-CHH-------HHHHHCCCCSCCCHHHHHHHHHHHHHH
T ss_pred -H-HHH-------HHHhhCCCCCCCcHHHHHHHHHHHHHH
Confidence 1 222 234456678999999999999998754
No 118
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=24.06 E-value=5.7 Score=30.09 Aligned_cols=29 Identities=41% Similarity=0.915 Sum_probs=17.2
Q ss_pred cCCCCccCccccCCccceecCCCC-------Cchhhhc
Q 013900 384 ALVEPVCPICLTNPKDMAFGCGHT-------TCKDCGT 414 (434)
Q Consensus 384 ~~e~~~CpICl~~~kdv~l~CGH~-------fC~~Ci~ 414 (434)
..+...|.||+.-- ++=.|||. ||..|.-
T Consensus 6 ~~d~~~C~iC~KTK--FADG~Gh~C~yCk~r~CaRCGg 41 (62)
T 2a20_A 6 KGDAPTCGICHKTK--FADGCGHNCSYCQTKFCARCGG 41 (62)
T ss_dssp SSCCCCCSSSSCSC--CCSSCCEEBTTTCCEECTTSEE
T ss_pred cCCcchhhhhccce--eccCCCccccccCCeeecccCC
Confidence 35667999999421 23355554 5666643
No 119
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=23.10 E-value=25 Score=39.75 Aligned_cols=45 Identities=20% Similarity=0.181 Sum_probs=37.5
Q ss_pred CCCCccCccccCCcc-ceecCCC-CCchhhhcCC----CCCCCcCcccccc
Q 013900 385 LVEPVCPICLTNPKD-MAFGCGH-TTCKDCGTTI----SSCPMCREPITTR 429 (434)
Q Consensus 385 ~e~~~CpICl~~~kd-v~l~CGH-~fC~~Ci~~l----~~CPlCR~~i~~~ 429 (434)
.+.+.|||-++.++| |.++.|| ++=+.++.+| ..||+-|.+++..
T Consensus 889 P~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp CGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred cHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 467899999999999 9999984 7888887755 5799999998753
No 120
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.10 E-value=37 Score=27.21 Aligned_cols=42 Identities=26% Similarity=0.600 Sum_probs=28.5
Q ss_pred cCCCCccCccccCCcc--cee--cCCCCCchhhhcC--------CCCCCCcCcc
Q 013900 384 ALVEPVCPICLTNPKD--MAF--GCGHTTCKDCGTT--------ISSCPMCREP 425 (434)
Q Consensus 384 ~~e~~~CpICl~~~kd--v~l--~CGH~fC~~Ci~~--------l~~CPlCR~~ 425 (434)
..++..|.||...-.. +++ .|...|...|+.. -..||.|+..
T Consensus 13 ~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3556789999975432 454 7887777788752 1479999764
No 121
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=22.96 E-value=30 Score=26.98 Aligned_cols=22 Identities=27% Similarity=0.848 Sum_probs=16.9
Q ss_pred cCCCCCchhhhcCCCCCCCcCcc
Q 013900 403 GCGHTTCKDCGTTISSCPMCREP 425 (434)
Q Consensus 403 ~CGH~fC~~Ci~~l~~CPlCR~~ 425 (434)
.||+.||..|...+-. -.|...
T Consensus 55 ~C~~~FC~~C~~~wH~-~~C~~~ 76 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE-GECSAV 76 (80)
T ss_dssp CCSCCEETTTTEECCS-SCSSSC
T ss_pred CCCCeeccccCccccC-Cccccc
Confidence 5999999999987755 556543
No 122
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=21.81 E-value=29 Score=26.74 Aligned_cols=30 Identities=30% Similarity=0.573 Sum_probs=22.6
Q ss_pred CCCCccCccccCCccceecC-CCCCchhhhc
Q 013900 385 LVEPVCPICLTNPKDMAFGC-GHTTCKDCGT 414 (434)
Q Consensus 385 ~e~~~CpICl~~~kdv~l~C-GH~fC~~Ci~ 414 (434)
++..-|.||.+-..-.-+.| |-.||..|..
T Consensus 6 ee~pWC~ICneDAtlrC~gCdgDLYC~rC~r 36 (67)
T 2d8v_A 6 SGLPWCCICNEDATLRCAGCDGDLYCARCFR 36 (67)
T ss_dssp CCCSSCTTTCSCCCEEETTTTSEEECSSHHH
T ss_pred cCCCeeEEeCCCCeEEecCCCCceehHHHHH
Confidence 45678999998654344588 7789999976
No 123
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=21.66 E-value=19 Score=35.87 Aligned_cols=40 Identities=20% Similarity=0.554 Sum_probs=0.0
Q ss_pred CCccCccccCCcc-----ceecCCCCCchhhhcC-----------CCCCCCcCccc
Q 013900 387 EPVCPICLTNPKD-----MAFGCGHTTCKDCGTT-----------ISSCPMCREPI 426 (434)
Q Consensus 387 ~~~CpICl~~~kd-----v~l~CGH~fC~~Ci~~-----------l~~CPlCR~~i 426 (434)
...|.+|...+.- -...||+.||..|... ...|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 4679999876542 2348999999999642 24677775544
No 124
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=21.52 E-value=1.4e+02 Score=32.42 Aligned_cols=49 Identities=22% Similarity=0.407 Sum_probs=29.0
Q ss_pred HHHHHHhcCCccccCC----C-ChHHHHHHHH--HHHHHccCccEEEEEEeCCccc
Q 013900 192 LARYREILPHLKLSGP----T-SFAPIIDAAI--DIVEASNRQYHVLVIIADGQVT 240 (434)
Q Consensus 192 l~~Yr~~~~~v~l~GP----T-~fapiI~~a~--~~~~~~~~~Y~VLlIiTDG~i~ 240 (434)
++.+++.+.+++.+|- - -|.-|+..|. +..-=..+..++||++||...+
T Consensus 200 ~~~f~~~v~~~~isgn~D~PE~g~dAl~qa~~c~~~igWr~~a~rllv~~TDa~~H 255 (690)
T 3fcs_B 200 VTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTH 255 (690)
T ss_dssp HHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBC
T ss_pred HHHHHHHhhceeccCCCCCCchHHHHHHHHhhcccccCCCCCceEEEEEECCCccc
Confidence 4566777777777763 3 3444444432 1111123458999999998765
No 125
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=21.06 E-value=42 Score=30.80 Aligned_cols=29 Identities=24% Similarity=0.513 Sum_probs=21.2
Q ss_pred CCCccCccccCCcc-----ceecCCCCCchhhhc
Q 013900 386 VEPVCPICLTNPKD-----MAFGCGHTTCKDCGT 414 (434)
Q Consensus 386 e~~~CpICl~~~kd-----v~l~CGH~fC~~Ci~ 414 (434)
+...|.+|...|.- =.-.||+.||..|..
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 34699999976643 113799999999954
Done!