BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013902
(434 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LN1|A Chain A, Crystal Structure Of Human Phosphatidylcholine Transfer
Protein In Complex With Dilinoleoylphosphatidylcholine
Length = 214
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 19/195 (9%)
Query: 154 EWQTLMEKSTPNMTYQAWRSEPETGPAVYRTRTVFEGATPELVRDFFWDDEFRRKWDHML 213
+WQ L+E S ++ Y+ + +TG Y+ V E +P L+ D + D ++R++WD
Sbjct: 29 DWQLLVETSGISI-YRLL--DKKTGLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQ-- 83
Query: 214 AYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRR----IWEAGKNYYCVTKGVPYPA 269
YVK L E G +V W K+PF S+R+Y+ R+ E K + + + P
Sbjct: 84 -YVKELYEQECNGETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHVILARSTSMPQ 142
Query: 270 LPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMG--IPKDVAKLAIRHG 327
L +R RV+ Y S I + DG+ +V + +++ G IP + A ++G
Sbjct: 143 LGERSGVIRVKQYKQSLAIES------DGK-KGSKVFMYYFDNPGGQIPSWLINWAAKNG 195
Query: 328 MWGGVKKLNSGMKAY 342
+ +K + + Y
Sbjct: 196 VPNFLKDMARACQNY 210
>pdb|1LN2|A Chain A, Crystal Structure Of Human Phosphatidylcholine Transfer
Protein In Complex With Dilinoleoylphosphatidylcholine
(Seleno-Met Protein)
pdb|1LN2|B Chain B, Crystal Structure Of Human Phosphatidylcholine Transfer
Protein In Complex With Dilinoleoylphosphatidylcholine
(Seleno-Met Protein)
pdb|1LN3|A Chain A, Structure Of Human Phosphatidylcholine Transfer Protein In
Complex With Palmitoyl-Linoleoyl Phosphatidylcholine
(Seleno-Met Protein)
pdb|1LN3|B Chain B, Structure Of Human Phosphatidylcholine Transfer Protein In
Complex With Palmitoyl-Linoleoyl Phosphatidylcholine
(Seleno-Met Protein)
Length = 214
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 10/141 (7%)
Query: 154 EWQTLMEKSTPNMTYQAWRSEPETGPAVYRTRTVFEGATPELVRDFFWDDEFRRKWDHML 213
+WQ L+E S ++ Y+ + +TG Y+ V E +P L+ D + D ++R++WD
Sbjct: 29 DWQLLVETSGISI-YRLL--DKKTGLYEYKVFGVLEDCSPTLLADIYXDSDYRKQWDQ-- 83
Query: 214 AYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRR----IWEAGKNYYCVTKGVPYPA 269
YVK L E G +V W K+PF S+R+Y+ R+ E K + + + P
Sbjct: 84 -YVKELYEQECNGETVVYWEVKYPFPXSNRDYVYLRQRRDLDXEGRKIHVILARSTSXPQ 142
Query: 270 LPKRDKPRRVEHYFSSWVIRA 290
L +R RV+ Y S I +
Sbjct: 143 LGERSGVIRVKQYKQSLAIES 163
>pdb|2FAF|A Chain A, The Structure Of Chicken Mitochondrial Pepck.
pdb|2FAF|B Chain B, The Structure Of Chicken Mitochondrial Pepck.
pdb|2FAH|A Chain A, The Structure Of Mitochondrial Pepck, Complex With Mn And
Gdp
pdb|2FAH|B Chain B, The Structure Of Mitochondrial Pepck, Complex With Mn And
Gdp
pdb|2FAH|C Chain C, The Structure Of Mitochondrial Pepck, Complex With Mn And
Gdp
pdb|2FAH|D Chain D, The Structure Of Mitochondrial Pepck, Complex With Mn And
Gdp
pdb|2QZY|A Chain A, The Structure Of Chicken Mitochondrial Pepck In Complex
With Pep
pdb|2QZY|B Chain B, The Structure Of Chicken Mitochondrial Pepck In Complex
With Pep
Length = 608
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
Query: 124 ARTAEKEQHVVTENDLEHLLQLLERKDGEIEWQTLMEKSTPNMTYQAWRSEP----ETGP 179
+RT + N + + L R DG + W L E + P +TY +W +P + P
Sbjct: 327 SRTNPNAMATIARNTIFTNVGL--RSDGGVYWDGLDEPTEPGVTYTSWLGKPWKHGDPEP 384
Query: 180 AVYRTRTVFEGATPELVRDFFWDD 203
+ A + D WDD
Sbjct: 385 CAHPNSRFCAPADQCPIMDPRWDD 408
>pdb|2Z9Z|A Chain A, Crystal Structure Of Cert Start Domain(N504a Mutant), In
Complex With C10-Diacylglycerol
Length = 255
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 53/141 (37%), Gaps = 27/141 (19%)
Query: 140 EHLLQLLERKDGEIEWQTLMEKSTPNMTYQAWRSEPETGPAVY---RTRTVFEGATPELV 196
H+ L+ G+ WQ ++E+ + +R E E V + +G T V
Sbjct: 34 NHMTYSLQDVGGDANWQLVVEEGE----MKVYRREVEENGIVLDPLKATHAVKGVTGHEV 89
Query: 197 RDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWEAGK 256
++FW+ + R W+ + +E +I Y +R+W A +
Sbjct: 90 CNYFWNVDVRNDWETTIENFHVVETLADNAIII---------------YQTHKRVWPASQ 134
Query: 257 N---YYCVTKGVPYPALPKRD 274
Y V + + PAL + D
Sbjct: 135 RDVLYLSVIRKI--PALTEND 153
>pdb|2E3M|A Chain A, Crystal Structure Of Cert Start Domain
pdb|2E3N|A Chain A, Crystal Structure Of Cert Start Domain In Complex With C6-
Ceramide (P212121)
pdb|2E3O|A Chain A, Crystal Structure Of Cert Start Domain In Complex With
C16- Ceramide (P212121)
pdb|2E3P|A Chain A, Crystal Structure Of Cert Start Domain In Complex With
C16- Cearmide (P1)
pdb|2E3P|B Chain B, Crystal Structure Of Cert Start Domain In Complex With
C16- Cearmide (P1)
pdb|2E3Q|A Chain A, Crystal Structure Of Cert Start Domain In Complex With
C18- Ceramide (p212121)
pdb|2E3R|A Chain A, Crystal Structure Of Cert Start Domain In Complex With
C18- Ceramide (P1)
pdb|2E3R|B Chain B, Crystal Structure Of Cert Start Domain In Complex With
C18- Ceramide (P1)
pdb|2E3S|A Chain A, Crystal Structure Of Cert Start Domain Co-Crystallized
With C24-Ceramide (P21)
pdb|2Z9Y|A Chain A, Crystal Structure Of Cert Start Domain In Complex With
C10- Diacylglycerol
pdb|3H3Q|A Chain A, Crystal Structure Of The Cert Start Domain In Complex With
Hpa-13
pdb|3H3Q|B Chain B, Crystal Structure Of The Cert Start Domain In Complex With
Hpa-13
pdb|3H3R|A Chain A, Crystal Structure Of The Cert Start Domain In Complex With
Hpa-14
pdb|3H3R|B Chain B, Crystal Structure Of The Cert Start Domain In Complex With
Hpa-14
pdb|3H3S|A Chain A, Crystal Structure Of The Cert Start Domain In Complex With
Hpa-15
pdb|3H3S|B Chain B, Crystal Structure Of The Cert Start Domain In Complex With
Hpa-15
pdb|3H3T|A Chain A, Crystal Structure Of The Cert Start Domain In Complex With
Hpa-16
pdb|3H3T|B Chain B, Crystal Structure Of The Cert Start Domain In Complex With
Hpa-16
Length = 255
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 53/141 (37%), Gaps = 27/141 (19%)
Query: 140 EHLLQLLERKDGEIEWQTLMEKSTPNMTYQAWRSEPETGPAVY---RTRTVFEGATPELV 196
H+ L+ G+ WQ ++E+ + +R E E V + +G T V
Sbjct: 34 NHMTYSLQDVGGDANWQLVVEEGE----MKVYRREVEENGIVLDPLKATHAVKGVTGHEV 89
Query: 197 RDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWEAGK 256
++FW+ + R W+ + +E +I Y +R+W A +
Sbjct: 90 CNYFWNVDVRNDWETTIENFHVVETLADNAIII---------------YQTHKRVWPASQ 134
Query: 257 N---YYCVTKGVPYPALPKRD 274
Y V + + PAL + D
Sbjct: 135 RDVLYLSVIRKI--PALTEND 153
>pdb|3KN3|A Chain A, Crystal Structure Of Lysr Substrate Binding Domain
(25-263) Of Putative Periplasmic Protein From Wolinella
Succinogenes
pdb|3KN3|B Chain B, Crystal Structure Of Lysr Substrate Binding Domain
(25-263) Of Putative Periplasmic Protein From Wolinella
Succinogenes
pdb|3KN3|C Chain C, Crystal Structure Of Lysr Substrate Binding Domain
(25-263) Of Putative Periplasmic Protein From Wolinella
Succinogenes
Length = 242
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 385 QVANPKYQKDHGIDWKWIVIG 405
V P Y+KD G+D KW+ +G
Sbjct: 22 DVLAPAYKKDTGVDLKWVAVG 42
>pdb|1VBG|A Chain A, Pyruvate Phosphate Dikinase From Maize
pdb|1VBH|A Chain A, Pyruvate Phosphate Dikinase With Bound Mg-Pep From Maize
Length = 876
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 18/96 (18%)
Query: 240 CSDREYIIGRRIWEAGKNYYCVTKGVPYPALPKRDKPRRVEHYFSSW---------VIRA 290
SD + ++G+ K Y KG P+P+ PK+ V F+SW I
Sbjct: 177 ASDLKELVGQY-----KEVYLSAKGEPFPSDPKKQLELAVLAVFNSWESPRAKKYRSINQ 231
Query: 291 VESLKGDGQLSACEVNLIHYEEMGIPKDVAKLAIRH 326
+ L+G +A V + + MG L R+
Sbjct: 232 ITGLRG----TAVNVQCMVFGNMGNTSGTGVLFTRN 263
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,772,224
Number of Sequences: 62578
Number of extensions: 505756
Number of successful extensions: 1037
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1030
Number of HSP's gapped (non-prelim): 9
length of query: 434
length of database: 14,973,337
effective HSP length: 102
effective length of query: 332
effective length of database: 8,590,381
effective search space: 2852006492
effective search space used: 2852006492
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)