BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013902
(434 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8R1R3|STAR7_MOUSE StAR-related lipid transfer protein 7, mitochondrial OS=Mus
musculus GN=Stard7 PE=2 SV=2
Length = 373
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 81/155 (52%), Gaps = 11/155 (7%)
Query: 149 KDGEIEWQTLMEKSTPNMTYQAWRSEPETGPAVYRTRTVFEGATPELVRDFF---WDDEF 205
KD E W+ +M+K ++ WR P TG +Y+ R VF T R FF D E+
Sbjct: 138 KDKEEPWEMVMDKKH----FKLWR-RPITGTHLYQYR-VFGTYTDVTPRQFFNVQLDTEY 191
Query: 206 RRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWEAGKN--YYCVTK 263
R+KWD ++ ++ +E ++G+ ++ W+ FP+ R+Y+ RR +N V++
Sbjct: 192 RKKWDALVIKLEVIERDAVSGSEVLHWVTHFPYPMYSRDYVYVRRYSVDQENNVMVLVSR 251
Query: 264 GVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDG 298
V +P++P+ + RV Y S VIR +S +G
Sbjct: 252 AVEHPSVPESPEFVRVRSYESQMVIRPHKSFDENG 286
>sp|Q9NQZ5|STAR7_HUMAN StAR-related lipid transfer protein 7, mitochondrial OS=Homo
sapiens GN=STARD7 PE=1 SV=2
Length = 370
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 79/152 (51%), Gaps = 11/152 (7%)
Query: 152 EIEWQTLMEKSTPNMTYQAWRSEPETGPAVYRTRTVFEGATPELVRDFF---WDDEFRRK 208
E W+ +M+K ++ WR P TG +Y+ R VF T R FF D E+R+K
Sbjct: 138 EQRWEMVMDKKH----FKLWR-RPITGTHLYQYR-VFGTYTDVTPRQFFNVQLDTEYRKK 191
Query: 209 WDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRR--IWEAGKNYYCVTKGVP 266
WD ++ ++ +E ++G+ ++ W+ FP+ R+Y+ RR + + V++ V
Sbjct: 192 WDALVIKLEVIERDVVSGSEVLHWVTHFPYPMYSRDYVYVRRYSVDQENNMMVLVSRAVE 251
Query: 267 YPALPKRDKPRRVEHYFSSWVIRAVESLKGDG 298
+P++P+ + RV Y S VIR +S +G
Sbjct: 252 HPSVPESPEFVRVRSYESQMVIRPHKSFDENG 283
>sp|P02720|PPCT_BOVIN Phosphatidylcholine transfer protein OS=Bos taurus GN=PCTP PE=1
SV=1
Length = 213
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 19/181 (10%)
Query: 174 EPETGPAVYRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWI 233
+ +TG Y+ V E P+L+ D + D +R++WD YVK L E +G +V W
Sbjct: 46 DQQTGLYAYKVFGVLEDCLPDLLADVYMDLAYRKQWDQ---YVKELYEKECSGETVVYWQ 102
Query: 234 KKFPFFCSDREYIIGRR----IWEAGKNYYCVTKGVPYPALPKRDKPRRVEHYFSSWVIR 289
K+PF S+R+Y+ R+ +E K + + + P P++ RV+HY I+
Sbjct: 103 VKYPFPMSNRDYVYVRQRQELDFEGQKVHVILAQSTSEPQFPEKSGVIRVKHYKQRLAIQ 162
Query: 290 AVESLKGDGQLSACEVNLIHYEEMG--IPKDVAKLAIRHGMWGGVKKLNSGMKAYQNARK 347
+ DG+ + +V + +++ G IP V A ++G+ +K + +KA QN +K
Sbjct: 163 S------DGKRGS-KVFMYYFDNPGGQIPSWVINWAAKNGVPNFLKDM---VKACQNYKK 212
Query: 348 S 348
+
Sbjct: 213 T 213
>sp|P53809|PPCT_RAT Phosphatidylcholine transfer protein OS=Rattus norvegicus GN=Pctp
PE=2 SV=2
Length = 214
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 22/200 (11%)
Query: 154 EWQTLMEKSTPNMTYQAWRSEPETGPAVYRTRTVFEGATPELVRDFFWDDEFRRKWDHML 213
+WQ L+E S + +S TG Y+ V E P L+ D + D ++R+KWD
Sbjct: 29 DWQLLVEASGITIYRLLDQS---TGLYEYKVFGVLESCIPSLLADVYMDLDYRKKWDQ-- 83
Query: 214 AYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRR----IWEAGKNYYCVTKGVPYPA 269
YVK L E G M+ W K+PF S+R+Y+ R+ + K Y + + + P
Sbjct: 84 -YVKELYEKSFDGQMVAYWEVKYPFPLSNRDYVYTRQRRDLDVDGRKIYVVLAQNISVPQ 142
Query: 270 LPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMG--IPKDVAKLAIRHG 327
P++ RV+ Y S I + DG+ V + +++ G IP + A ++G
Sbjct: 143 FPEKSGVIRVKQYKQSLAIES------DGK-KGSRVFMYYFDNPGGQIPSWLINWAAKNG 195
Query: 328 MWGGVKKLNSGMKAYQNARK 347
+ +K + +KA QN K
Sbjct: 196 VPSFLKDM---VKACQNYHK 212
>sp|P53808|PPCT_MOUSE Phosphatidylcholine transfer protein OS=Mus musculus GN=Pctp PE=1
SV=2
Length = 214
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 95/200 (47%), Gaps = 22/200 (11%)
Query: 154 EWQTLMEKSTPNMTYQAWRSEPETGPAVYRTRTVFEGATPELVRDFFWDDEFRRKWDHML 213
+WQ L+E S +T +P +G Y+ V EG +P L+ D + D ++R++WD
Sbjct: 29 DWQLLVEAS--GITIYRLLDQP-SGLYEYKVFGVLEGCSPALLTDVYMDLDYRKQWDQ-- 83
Query: 214 AYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWEAG----KNYYCVTKGVPYPA 269
YVK L E M+ W K+PF S+R+Y+ R+ + K Y + + + P
Sbjct: 84 -YVKELYEKESDEQMVAYWEVKYPFPLSNRDYVYTRQRRDLDVDRRKIYVVLAQSISAPQ 142
Query: 270 LPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMG--IPKDVAKLAIRHG 327
P++ RV+ Y S I + DG+ V + +++ G IP + A ++G
Sbjct: 143 FPEKSGVIRVKQYKQSLAIES------DGK-KGSRVFMYYFDNPGGQIPSWLINWAAKNG 195
Query: 328 MWGGVKKLNSGMKAYQNARK 347
+ +K + +KA QN K
Sbjct: 196 VPNFLKDM---VKACQNYHK 212
>sp|Q9UKL6|PPCT_HUMAN Phosphatidylcholine transfer protein OS=Homo sapiens GN=PCTP PE=1
SV=1
Length = 214
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 19/195 (9%)
Query: 154 EWQTLMEKSTPNMTYQAWRSEPETGPAVYRTRTVFEGATPELVRDFFWDDEFRRKWDHML 213
+WQ L+E S ++ Y+ + +TG Y+ V E +P L+ D + D ++R++WD
Sbjct: 29 DWQLLVETSGISI-YRLL--DKKTGLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQ-- 83
Query: 214 AYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRR----IWEAGKNYYCVTKGVPYPA 269
YVK L E G +V W K+PF S+R+Y+ R+ E K + + + P
Sbjct: 84 -YVKELYEQECNGETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHVILARSTSMPQ 142
Query: 270 LPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMG--IPKDVAKLAIRHG 327
L +R RV+ Y S I + DG+ +V + +++ G IP + A ++G
Sbjct: 143 LGERSGVIRVKQYKQSLAIES------DGK-KGSKVFMYYFDNPGGQIPSWLINWAAKNG 195
Query: 328 MWGGVKKLNSGMKAY 342
+ +K + + Y
Sbjct: 196 VPNFLKDMARACQNY 210
>sp|Q0HPD4|DNAA_SHESM Chromosomal replication initiator protein DnaA OS=Shewanella sp.
(strain MR-4) GN=dnaA PE=3 SV=1
Length = 460
Score = 35.8 bits (81), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 328 MWGGVKKLNSGMKAYQNARKSDSSSPGRALMASITTKISVNESMESLDPVSSEEEKGQVA 387
M KL + + +A+K + + + + TK SV S + +PV++ + +
Sbjct: 67 MGNDAPKLRFDIGSRPSAKKPEPAPVAAVRVPNPQTKASVGTSFNTTEPVANTNHRSNI- 125
Query: 388 NPKYQKDHGIDWKWIVIGGTVAVVCALHSGAIGKALLLGAG 428
NP YQ D+ ++ K +G A+ A + G L L G
Sbjct: 126 NPTYQFDNFVEGKSNQLGKAAALQVAENPGGAYNPLFLYGG 166
>sp|Q8EKT2|DNAA_SHEON Chromosomal replication initiator protein DnaA OS=Shewanella
oneidensis (strain MR-1) GN=dnaA PE=3 SV=1
Length = 460
Score = 35.8 bits (81), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 328 MWGGVKKLNSGMKAYQNARKSDSSSPGRALMASITTKISVNESMESLDPVSSEEEKGQVA 387
M KL + + +A+K + + + S TK SV + + +PV++ + +
Sbjct: 67 MGNDAPKLRFDIGSRPSAKKPEPAPVAAVRVPSPQTKASVGTAFNTTEPVANTNHRSNI- 125
Query: 388 NPKYQKDHGIDWKWIVIGGTVAVVCALHSGAIGKALLLGAG 428
NP YQ D+ ++ K +G A+ A + G L L G
Sbjct: 126 NPTYQFDNFVEGKSNQLGKAAALQVAENPGGAYNPLFLYGG 166
>sp|A0KR35|DNAA_SHESA Chromosomal replication initiator protein DnaA OS=Shewanella sp.
(strain ANA-3) GN=dnaA PE=3 SV=1
Length = 460
Score = 35.4 bits (80), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 328 MWGGVKKLNSGMKAYQNARKSDSSSPGRALMASITTKISVNESMESLDPVSSEEEKGQVA 387
M KL + + +A+K + + + + TK SV S + +PV++ + +
Sbjct: 67 MGNDAPKLRFDIGSRPSAKKPEPAPVAAVRVPNPQTKASVGTSFNTTEPVANANHRSNI- 125
Query: 388 NPKYQKDHGIDWKWIVIGGTVAVVCALHSGAIGKALLLGAG 428
NP YQ D+ ++ K +G A+ A + G L L G
Sbjct: 126 NPTYQFDNFVEGKSNQLGKAAALQVAENPGGAYNPLFLYGG 166
>sp|Q0I0U8|DNAA_SHESR Chromosomal replication initiator protein DnaA OS=Shewanella sp.
(strain MR-7) GN=dnaA PE=3 SV=1
Length = 460
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Query: 328 MWGGVKKLNSGMKAYQNARKSDSSSPGRALMASITTKISVNESMESLDPVSSEEEKGQVA 387
M KL + + +A+K + + + + TK SV S + +PV + + +
Sbjct: 67 MGNDAPKLRFDIGSRPSAKKPEPAPVAAVRVPNPQTKASVGTSFNTTEPVVNANHRSNI- 125
Query: 388 NPKYQKDHGIDWKWIVIGGTVAVVCALHSGAIGKALLLGAG 428
NP YQ D+ ++ K +G A+ A + G L L G
Sbjct: 126 NPTYQFDNFVEGKSNQLGKAAALQVAENPGGAYNPLFLYGG 166
>sp|Q5M7Y0|C43BP_DANRE Collagen type IV alpha-3-binding protein OS=Danio rerio GN=col4a3bp
PE=1 SV=2
Length = 620
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 9/122 (7%)
Query: 141 HLLQLLERKDGEIEWQTLMEKSTPNMTYQAWRSEPETGPAVY---RTRTVFEGATPELVR 197
H+ L+ G+ WQ ++E+ + +R E E V + +G T V
Sbjct: 400 HMTYSLQDVGGDANWQLVVEEGD----MKVYRREVEENGIVLDPLKATHAVKGVTGHEVC 455
Query: 198 DFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKF-PFFCSDREYI-IGRRIWEAG 255
+FWD +R W+ + + +E +I Q +K+ P D Y+ + R+I
Sbjct: 456 HYFWDTAYRNDWETTVESFQVVETLSDQACIIHQTLKRVWPASQRDVLYVSVMRKILSTN 515
Query: 256 KN 257
+N
Sbjct: 516 EN 517
>sp|Q578E0|LIVB6_BRUAB Leu/Ile/Val-binding protein homolog 6 OS=Brucella abortus biovar 1
(strain 9-941) GN=BruAb2_0578 PE=3 SV=1
Length = 390
Score = 33.1 bits (74), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 79 LAFTALSAFSACRVLWNNFKGKGTKSDAASAAAAGEGVDGDASPGARTAEKEQHVVTEND 138
L+F ++ A+ V++ + G K DAA A A +G++ + G + + E +T+N
Sbjct: 299 LSFPSVGAYDGMHVIYKMIEATGGKKDAAKAVEAVKGMEWVSPRGPVSIDPESRHITQN- 357
Query: 139 LEHLLQLLERKDGEI---EWQTLMEKSTPNMTYQ 169
+L ++ + DG E QT ++ P + Q
Sbjct: 358 -IYLREVAKADDGTYYNKEIQTFEKQGDPGLKAQ 390
>sp|Q2YKQ9|LIVB6_BRUA2 Leu/Ile/Val-binding protein homolog 6 OS=Brucella abortus (strain
2308) GN=BAB2_0593 PE=3 SV=1
Length = 390
Score = 33.1 bits (74), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 79 LAFTALSAFSACRVLWNNFKGKGTKSDAASAAAAGEGVDGDASPGARTAEKEQHVVTEND 138
L+F ++ A+ V++ + G K DAA A A +G++ + G + + E +T+N
Sbjct: 299 LSFPSVGAYDGMHVIYKMIEATGGKKDAAKAVEAVKGMEWVSPRGPVSIDPESRHITQN- 357
Query: 139 LEHLLQLLERKDGEI---EWQTLMEKSTPNMTYQ 169
+L ++ + DG E QT ++ P + Q
Sbjct: 358 -IYLREVAKADDGTYYNKEIQTFEKQGDPGLKAQ 390
>sp|Q8YC99|LIVB6_BRUME Leu/Ile/Val-binding protein homolog 6 OS=Brucella melitensis
biotype 1 (strain 16M / ATCC 23456 / NCTC 10094)
GN=BMEII0633 PE=3 SV=2
Length = 390
Score = 33.1 bits (74), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 79 LAFTALSAFSACRVLWNNFKGKGTKSDAASAAAAGEGVDGDASPGARTAEKEQHVVTEND 138
L+F ++ A+ V++ + G K DAA A A +G++ + G + + E +T+N
Sbjct: 299 LSFPSVGAYDGMHVIYKMIEATGGKKDAAKAVEAVKGMEWVSPRGPVSIDPESRHITQN- 357
Query: 139 LEHLLQLLERKDGEI---EWQTLMEKSTPNMTYQ 169
+L ++ + DG E QT ++ P + Q
Sbjct: 358 -IYLREVAKADDGTYYNKEIQTFEKQGDPGLKAQ 390
>sp|Q8FW17|LIVB6_BRUSU Leu/Ile/Val-binding protein homolog 6 OS=Brucella suis biovar 1
(strain 1330) GN=BRA0648 PE=3 SV=1
Length = 390
Score = 33.1 bits (74), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 79 LAFTALSAFSACRVLWNNFKGKGTKSDAASAAAAGEGVDGDASPGARTAEKEQHVVTEND 138
L+F ++ A+ V++ + G K DAA A A +G++ + G + + E +T+N
Sbjct: 299 LSFPSVGAYDGMHVIYKMIEATGGKKDAAKAVEAVKGMEWVSPRGPVSIDPESRHITQN- 357
Query: 139 LEHLLQLLERKDGEI---EWQTLMEKSTPNMTYQ 169
+L ++ + DG E QT ++ P + Q
Sbjct: 358 -IYLREVAKADDGTYYNKEIQTFEKQGDPGLKAQ 390
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173,869,986
Number of Sequences: 539616
Number of extensions: 7488437
Number of successful extensions: 18964
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 18947
Number of HSP's gapped (non-prelim): 18
length of query: 434
length of database: 191,569,459
effective HSP length: 120
effective length of query: 314
effective length of database: 126,815,539
effective search space: 39820079246
effective search space used: 39820079246
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)