Query 013902
Match_columns 434
No_of_seqs 177 out of 666
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 08:32:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013902.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013902hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2761 START domain-containin 100.0 6.4E-48 1.4E-52 364.6 23.7 210 131-346 5-219 (219)
2 cd08870 START_STARD2_7-like Li 100.0 7.9E-44 1.7E-48 337.2 27.3 204 133-342 2-209 (209)
3 cd08910 START_STARD2-like Lipi 100.0 1.1E-40 2.4E-45 316.2 25.2 196 133-342 4-207 (207)
4 cd08911 START_STARD7-like Lipi 100.0 1.6E-40 3.6E-45 314.7 25.7 184 151-342 19-207 (207)
5 cd08871 START_STARD10-like Lip 100.0 4E-39 8.7E-44 306.9 27.2 206 132-352 5-213 (222)
6 cd08872 START_STARD11-like Cer 100.0 1.1E-33 2.3E-38 273.7 25.2 206 135-352 8-233 (235)
7 cd08868 START_STARD1_3_like Ch 100.0 6.1E-34 1.3E-38 268.9 22.8 193 135-341 10-207 (208)
8 cd08904 START_STARD6-like Lipi 100.0 1.2E-33 2.7E-38 268.1 24.0 193 134-340 6-204 (204)
9 cd08906 START_STARD3-like Chol 100.0 1.4E-33 3.1E-38 268.2 22.8 192 135-341 10-208 (209)
10 cd08905 START_STARD1-like Chol 100.0 2.3E-32 4.9E-37 259.6 21.2 192 134-340 9-207 (209)
11 smart00234 START in StAR and p 100.0 6.1E-32 1.3E-36 252.0 23.4 192 137-343 6-204 (206)
12 cd08903 START_STARD5-like Lipi 100.0 4.6E-31 1E-35 250.5 24.4 191 135-341 7-207 (208)
13 cd08874 START_STARD9-like C-te 100.0 5.4E-31 1.2E-35 250.2 23.9 168 152-329 21-194 (205)
14 cd08867 START_STARD4_5_6-like 100.0 1.2E-30 2.5E-35 246.2 24.0 190 136-339 8-205 (206)
15 cd08914 START_STARD15-like Lip 100.0 3.4E-30 7.3E-35 248.9 22.1 174 153-344 56-234 (236)
16 cd08902 START_STARD4-like Lipi 100.0 3.7E-30 8E-35 242.4 18.4 176 152-340 22-202 (202)
17 cd08873 START_STARD14_15-like 100.0 1.4E-29 3.1E-34 244.7 22.1 191 132-343 38-232 (235)
18 cd08913 START_STARD14-like Lip 100.0 2.2E-29 4.8E-34 244.3 21.7 180 142-343 51-237 (240)
19 cd08869 START_RhoGAP C-termina 100.0 9E-29 1.9E-33 232.9 22.5 182 139-340 7-195 (197)
20 PF01852 START: START domain; 100.0 2.9E-28 6.3E-33 226.6 25.7 179 152-343 18-204 (206)
21 cd00177 START Lipid-binding ST 100.0 3.6E-28 7.8E-33 220.9 24.2 183 140-338 5-191 (193)
22 cd08877 START_2 Uncharacterize 100.0 5.8E-28 1.3E-32 229.2 22.8 187 139-341 11-214 (215)
23 cd08876 START_1 Uncharacterize 100.0 2E-27 4.4E-32 220.4 22.5 174 153-340 17-195 (195)
24 cd08908 START_STARD12-like C-t 99.9 3.1E-24 6.7E-29 203.9 22.4 167 138-323 14-186 (204)
25 cd08907 START_STARD8-like C-te 99.9 2.9E-24 6.2E-29 203.0 21.2 183 137-338 13-201 (205)
26 cd08909 START_STARD13-like C-t 99.9 2.2E-23 4.7E-28 198.2 22.8 154 154-323 28-187 (205)
27 PLN00188 enhanced disease resi 99.9 1.5E-23 3.2E-28 226.0 20.8 198 152-360 197-407 (719)
28 cd08864 SRPBCC_DUF3074 DUF3074 99.6 3.4E-14 7.4E-19 135.7 19.9 159 166-328 16-195 (208)
29 KOG1739 Serine/threonine prote 99.5 4.2E-14 9.1E-19 146.3 12.4 194 151-353 401-610 (611)
30 cd08875 START_ArGLABRA2_like C 99.3 2.2E-10 4.8E-15 110.9 17.9 194 136-339 9-228 (229)
31 cd07813 COQ10p_like Coenzyme Q 99.2 4.1E-10 8.9E-15 98.5 13.7 134 183-341 2-137 (138)
32 PF11274 DUF3074: Protein of u 99.1 8.2E-09 1.8E-13 97.1 17.8 137 190-327 13-172 (184)
33 cd08866 SRPBCC_11 Ligand-bindi 99.0 2E-08 4.3E-13 87.8 17.5 132 183-340 2-143 (144)
34 cd07819 SRPBCC_2 Ligand-bindin 98.9 8.4E-08 1.8E-12 82.7 16.3 133 182-338 4-139 (140)
35 cd05018 CoxG Carbon monoxide d 98.8 4.3E-07 9.2E-12 78.6 15.8 135 181-339 2-143 (144)
36 PF03364 Polyketide_cyc: Polyk 98.3 5.4E-05 1.2E-09 65.1 17.0 127 190-336 2-130 (130)
37 PRK10724 hypothetical protein; 98.2 6.4E-05 1.4E-09 69.1 15.3 138 179-341 14-153 (158)
38 cd07821 PYR_PYL_RCAR_like Pyra 98.0 0.00029 6.3E-09 60.1 15.0 134 181-339 2-139 (140)
39 cd07817 SRPBCC_8 Ligand-bindin 98.0 0.0003 6.5E-09 60.5 14.9 129 183-339 3-137 (139)
40 cd08860 TcmN_ARO-CYC_like N-te 97.8 0.0015 3.2E-08 59.1 16.8 135 185-341 6-144 (146)
41 cd08861 OtcD1_ARO-CYC_like N-t 97.8 0.0013 2.8E-08 57.2 15.2 129 185-339 4-140 (142)
42 PF10604 Polyketide_cyc2: Poly 97.6 0.0098 2.1E-07 50.7 17.7 131 181-338 3-137 (139)
43 cd08865 SRPBCC_10 Ligand-bindi 97.3 0.021 4.5E-07 48.5 15.7 129 185-339 4-138 (140)
44 cd07812 SRPBCC START/RHO_alpha 97.3 0.02 4.4E-07 46.9 15.0 130 183-336 2-138 (141)
45 cd07824 SRPBCC_6 Ligand-bindin 97.1 0.025 5.3E-07 50.1 15.1 129 182-336 3-143 (146)
46 cd08862 SRPBCC_Smu440-like Lig 96.9 0.071 1.5E-06 45.6 15.5 129 182-339 3-136 (138)
47 cd07822 SRPBCC_4 Ligand-bindin 96.9 0.063 1.4E-06 45.6 15.0 137 182-342 2-139 (141)
48 COG5637 Predicted integral mem 96.2 0.18 3.8E-06 47.9 14.1 142 178-345 68-210 (217)
49 cd07818 SRPBCC_1 Ligand-bindin 96.0 0.31 6.8E-06 42.6 14.1 38 182-220 4-41 (150)
50 cd07823 SRPBCC_5 Ligand-bindin 95.9 0.37 8.1E-06 42.5 14.5 133 185-339 4-144 (146)
51 cd07814 SRPBCC_CalC_Aha1-like 95.7 0.84 1.8E-05 38.8 15.6 134 183-340 3-138 (139)
52 COG2867 Oligoketide cyclase/li 95.0 0.26 5.7E-06 45.1 10.4 122 180-325 2-125 (146)
53 cd07820 SRPBCC_3 Ligand-bindin 93.6 3.3 7.1E-05 36.1 14.1 36 184-220 3-38 (137)
54 cd07825 SRPBCC_7 Ligand-bindin 93.0 3.2 6.9E-05 35.9 13.0 29 182-211 2-30 (144)
55 cd08896 SRPBCC_CalC_Aha1-like_ 88.9 15 0.00033 32.2 16.3 139 182-339 2-144 (146)
56 KOG3845 MLN, STAR and related 88.2 0.048 1E-06 53.8 -3.4 166 167-341 35-208 (241)
57 cd08893 SRPBCC_CalC_Aha1-like_ 85.8 20 0.00044 30.2 13.0 133 182-340 2-135 (136)
58 COG3427 Carbon monoxide dehydr 85.1 31 0.00068 31.8 13.8 132 182-338 3-142 (146)
59 cd08899 SRPBCC_CalC_Aha1-like_ 83.5 33 0.00072 30.7 13.5 34 177-211 8-41 (157)
60 cd08894 SRPBCC_CalC_Aha1-like_ 79.9 40 0.00087 29.3 15.9 132 182-339 2-137 (139)
61 PF08327 AHSA1: Activator of H 77.6 40 0.00086 28.0 15.5 121 190-339 1-123 (124)
62 cd08895 SRPBCC_CalC_Aha1-like_ 68.2 83 0.0018 27.5 18.1 137 183-339 3-144 (146)
63 cd07816 Bet_v1-like Ligand-bin 67.0 94 0.002 27.7 16.8 114 182-313 3-119 (148)
64 PF06240 COXG: Carbon monoxide 64.7 1E+02 0.0022 27.2 18.2 131 185-339 2-139 (140)
65 KOG2200 Tumour suppressor prot 59.3 2.7 5.8E-05 46.3 -0.4 71 239-323 575-647 (674)
66 KOG3177 Oligoketide cyclase/li 58.5 57 0.0012 32.0 8.3 127 179-326 67-195 (227)
67 cd08901 SRPBCC_CalC_Aha1-like_ 53.9 1.5E+02 0.0032 25.7 13.5 28 183-211 3-30 (136)
68 COG3832 Uncharacterized conser 52.5 1.7E+02 0.0038 26.1 14.3 33 178-211 6-38 (149)
69 PF13940 Ldr_toxin: Toxin Ldr, 50.4 12 0.00025 26.3 1.6 18 27-44 14-31 (35)
70 cd08900 SRPBCC_CalC_Aha1-like_ 46.0 2E+02 0.0043 24.9 16.8 29 182-211 2-30 (143)
71 cd08897 SRPBCC_CalC_Aha1-like_ 40.9 30 0.00064 29.9 3.3 28 182-210 2-29 (133)
72 PF10766 DUF2592: Protein of u 40.8 27 0.0006 25.3 2.4 19 24-42 7-25 (41)
73 cd07826 SRPBCC_CalC_Aha1-like_ 40.7 2.5E+02 0.0054 24.5 16.4 136 182-340 2-141 (142)
74 cd08898 SRPBCC_CalC_Aha1-like_ 39.6 2.4E+02 0.0051 23.9 15.4 30 182-212 3-32 (145)
75 PF05545 FixQ: Cbb3-type cytoc 39.1 34 0.00073 25.3 2.8 29 20-48 5-33 (49)
76 cd08891 SRPBCC_CalC Ligand-bin 32.8 3.4E+02 0.0073 23.7 15.9 138 182-340 2-148 (149)
77 TIGR01599 PYST-A Plasmodium yo 31.4 5E+02 0.011 25.3 15.5 140 155-308 38-208 (208)
78 PRK11876 petM cytochrome b6-f 30.3 49 0.0011 23.0 2.2 23 21-43 2-24 (32)
79 COG4420 Predicted membrane pro 29.6 91 0.002 30.0 4.7 41 4-48 47-87 (191)
80 PF06295 DUF1043: Protein of u 28.4 30 0.00064 30.9 1.2 14 31-44 2-15 (128)
81 cd08892 SRPBCC_Aha1 Putative h 27.1 78 0.0017 27.2 3.6 28 183-211 3-30 (126)
82 PF08041 PetM: PetM family of 26.6 68 0.0015 22.1 2.4 21 23-43 2-22 (31)
83 TIGR01594 holin_lambda phage h 25.5 99 0.0021 26.9 3.9 31 13-43 41-85 (107)
84 PF11772 EpuA: DNA-directed RN 25.3 40 0.00087 25.3 1.2 14 31-44 8-21 (47)
85 PTZ00220 Activator of HSP-90 A 23.3 57 0.0012 28.6 2.1 21 190-210 2-22 (132)
86 COG3330 Uncharacterized protei 23.0 96 0.0021 30.3 3.6 37 236-272 117-155 (215)
87 cd01324 cbb3_Oxidase_CcoQ Cyto 22.3 1.1E+02 0.0023 22.9 3.0 19 31-49 17-35 (48)
No 1
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=100.00 E-value=6.4e-48 Score=364.56 Aligned_cols=210 Identities=50% Similarity=0.840 Sum_probs=189.3
Q ss_pred CCCCCHHHHHHHHHHHhcC--CCCCCcEEEEeccCCCcceEEEe-ecCCCCCeEEEEEEEEcCCCHHHHHHHhcCchhhh
Q 013902 131 QHVVTENDLEHLLQLLERK--DGEIEWQTLMEKSTPNMTYQAWR-SEPETGPAVYRTRTVFEGATPELVRDFFWDDEFRR 207 (434)
Q Consensus 131 ~~~vtdeDf~~l~~lle~~--dg~~~We~v~dk~~~~~~ikVwr-R~~esgl~~yRa~gv~edaspe~V~dll~D~e~R~ 207 (434)
...||++||.+++++++.+ +++++|+++++++ ++.+|+ |.+++|+.+||+.|+++|+||+.|+|+++|.+||+
T Consensus 5 ~~~vs~~~~~~~~~~~e~~~~~~~~~We~~~~k~----~~~i~~q~~~~~g~~~Yk~~~vfeDvtp~~~~Dv~~D~eYRk 80 (219)
T KOG2761|consen 5 DGGVSEEDLPELLDLLEEKACDAGQGWELVMDKS----TPSIWRQRRPKTGLYEYKSRTVFEDVTPEIVRDVQWDDEYRK 80 (219)
T ss_pred cCcccccchHHHHHhhcccccCcccchhhhcccC----CceEEEEcccCCCCEEEEEEEEEcCCCHHHHHHHHhhhHHHH
Confidence 3569999999999999998 6788999999996 778888 77789999999999999999999999999999999
Q ss_pred hhhhhcceeEEEEEecCCCcEEEEEEEeeccccCCceeEEEEEEEecC-CEEEEEEeccCCCCCCCCCCCeEeeeeeEEE
Q 013902 208 KWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWEAG-KNYYCVTKGVPYPALPKRDKPRRVEHYFSSW 286 (434)
Q Consensus 208 ~WD~~l~~~evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri~~~~-~~yvivskSV~hp~~P~~~g~VRve~~~sgw 286 (434)
+||.++.+.++|+++..+|++|+||+.|||+|++|||||+.||+|+++ +.++|+++++.||++|+++++||+..+.+||
T Consensus 81 kWD~~vi~~e~ie~d~~tg~~vv~w~~kfP~p~~~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~ 160 (219)
T KOG2761|consen 81 KWDDMVIELETIEEDPVTGTEVVYWVKKFPFPMSNRDYVYVRRWWESDEKDYYIVSKSVQHPSYPPLKKKVRVTVYRSGW 160 (219)
T ss_pred HHHHHhhhheeeeecCCCCceEEEEEEeCCcccCCccEEEEEEEEecCCceEEEEEecccCCCcCCcCCcEEEEEEEEEE
Confidence 999999999999998778999999999999999999999999999877 8899999999999999999999999999999
Q ss_pred EEE-EeecCCCCCCccceEEEEEEeecCCCCHHHHHHHHhhchHHHHHHHHHHHHhhHhhh
Q 013902 287 VIR-AVESLKGDGQLSACEVNLIHYEEMGIPKDVAKLAIRHGMWGGVKKLNSGMKAYQNAR 346 (434)
Q Consensus 287 vIr-pv~s~~~dG~~~ac~Vty~~~~DpGIP~wlvN~av~~g~~~~lkkL~~alrkY~~~R 346 (434)
+|+ +..+..++| ++|+++|+++.+.|||.|++|+++++|||+++++|++||++|+++|
T Consensus 161 ~I~~~~~~~~~~~--~~~~~~~~~~p~~~iP~~~v~~~~~~gmp~~vkKm~~a~~~Y~~~~ 219 (219)
T KOG2761|consen 161 LIRVESRSGDEQG--CACEYLYFHNPGGGIPKWVVKLAVRKGMPGAVKKMEKALLAYQEKR 219 (219)
T ss_pred EEEcccccCCCCc--cEEEEEEEECCCCCCcHHHHHHHHHhcChHHHHHHHHHHHhhhhcC
Confidence 999 555543333 4455555544444599999999999999999999999999999875
No 2
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=100.00 E-value=7.9e-44 Score=337.18 Aligned_cols=204 Identities=50% Similarity=0.914 Sum_probs=187.1
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCcEEEEeccCCCcceEEEeecCC-CCCeEEEEEEEEcCCCHHHHHHHhcCchhhhhhhh
Q 013902 133 VVTENDLEHLLQLLERKDGEIEWQTLMEKSTPNMTYQAWRSEPE-TGPAVYRTRTVFEGATPELVRDFFWDDEFRRKWDH 211 (434)
Q Consensus 133 ~vtdeDf~~l~~lle~~dg~~~We~v~dk~~~~~~ikVwrR~~e-sgl~~yRa~gv~edaspe~V~dll~D~e~R~~WD~ 211 (434)
.|+|+||++|++++++....++|++++++++++++|+||+|.++ +++++||++++++++|+++|+++++|.++|++||+
T Consensus 2 ~~~~~d~~~~~~~~~~~~~~~~W~~~~~k~~~~~~i~vy~r~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~ 81 (209)
T cd08870 2 HVSEEDLRDLVQELQEGAEGQAWQQVMDKSTPDMSYQAWRRKPKGTGLYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDE 81 (209)
T ss_pred CCCHHHHHHHHHHhcCcCCCCcceEhhhccCCCceEEEEecccCCCCceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhh
Confidence 48999999999999998766789999999866667999999766 88999999999988999999999999999999999
Q ss_pred hcceeEEEEEecCCCcEEEEEEEeeccccCCceeEEEEEEEec-CCEEEEEEeccCCCCCCCCCCCeEeeeeeEEEEEEE
Q 013902 212 MLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWEA-GKNYYCVTKGVPYPALPKRDKPRRVEHYFSSWVIRA 290 (434)
Q Consensus 212 ~l~~~evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri~~~-~~~yvivskSV~hp~~P~~~g~VRve~~~sgwvIrp 290 (434)
++.++++|+..+.+++.|+|++.++|||++|||||+.|+++.+ ++.++|++++++||.+|++ |+|||+.+.++|+|+|
T Consensus 82 ~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~i~~~sv~~~~~P~~-~~vRv~~~~~~~~i~p 160 (209)
T cd08870 82 TVIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDDRSYVCVTKGVPYPSVPRS-GRKRVDDYESSLVIRA 160 (209)
T ss_pred heeeEEEEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCCCEEEEEEeCCcCCCCCCC-CcEEEEEEEeEEEEEE
Confidence 9999999987554378999999999999999999999998876 8889999999999999999 9999999999999999
Q ss_pred eecCCCCCCccceEEEEEEeecCC--CCHHHHHHHHhhchHHHHHHHHHHHHhh
Q 013902 291 VESLKGDGQLSACEVNLIHYEEMG--IPKDVAKLAIRHGMWGGVKKLNSGMKAY 342 (434)
Q Consensus 291 v~s~~~dG~~~ac~Vty~~~~DpG--IP~wlvN~av~~g~~~~lkkL~~alrkY 342 (434)
++. ++| .|+++|+++.||| ||.|++|++++++++++|++|+++|++|
T Consensus 161 ~~~--~~~---~t~~~~~~~~dp~G~IP~wlvN~~~~~~~~~~l~~l~~a~~~Y 209 (209)
T cd08870 161 VKG--DGQ---GSACEVTYFHNPDGGIPRELAKLAVKRGMPGFLKKLENALRKY 209 (209)
T ss_pred ecC--CCC---ceEEEEEEEECCCCCCCHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 962 123 3999999999995 9999999999999999999999999988
No 3
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=100.00 E-value=1.1e-40 Score=316.18 Aligned_cols=196 Identities=23% Similarity=0.453 Sum_probs=173.6
Q ss_pred CCCHHHHHHHHHHHhc-CCCCCCcEEEEeccCCCcceEEEeec-CCCCCeEEEEEEEEcCCCHHHHHHHhcCchhhhhhh
Q 013902 133 VVTENDLEHLLQLLER-KDGEIEWQTLMEKSTPNMTYQAWRSE-PETGPAVYRTRTVFEGATPELVRDFFWDDEFRRKWD 210 (434)
Q Consensus 133 ~vtdeDf~~l~~lle~-~dg~~~We~v~dk~~~~~~ikVwrR~-~esgl~~yRa~gv~edaspe~V~dll~D~e~R~~WD 210 (434)
.+||+||+|++++++. .+++.+|+++++++ +|+||+|. +++++++||+++++++++++++++++.|.++|++||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~W~l~~~~~----~i~Vy~r~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd 79 (207)
T cd08910 4 TFSEEQFREACAELQQPALDGAAWELLVESS----GISIYRLLDEQSGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWD 79 (207)
T ss_pred ccCHHHHHHHHHHhcCCCCCCCCeEEEEecC----CeEEEEeccCCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHH
Confidence 4899999999999984 44677899999995 99999995 458899999999998899999999999999999999
Q ss_pred hhcceeEEEEEecCCCcEEEEEEEeeccccCCceeEEEEEEEe---cCC-EEEEEEeccCCCCCCCCCCCeEeeeeeEEE
Q 013902 211 HMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWE---AGK-NYYCVTKGVPYPALPKRDKPRRVEHYFSSW 286 (434)
Q Consensus 211 ~~l~~~evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri~~---~~~-~yvivskSV~hp~~P~~~g~VRve~~~sgw 286 (434)
+++.+ +++.. .+++.++|+..++|||+++||||+.|+... +++ .++++++++.||.+|+++|+||++.+.++|
T Consensus 80 ~~~~~--~~~~~-~~~~~i~y~~~k~PwPvs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~ 156 (207)
T cd08910 80 QYVKE--LYEKE-CDGETVIYWEVKYPFPLSNRDYVYIRQRRDLDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSL 156 (207)
T ss_pred HHHHh--heeec-CCCCEEEEEEEEcCCCCCCceEEEEEEeccccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEE
Confidence 99886 45543 357899999999999999999999877542 343 457889999999999999999999999999
Q ss_pred EEEEeecCCCCCCccceEEEEEEeecCC--CCHHHHHHHHhhchHHHHHHHHHHHHhh
Q 013902 287 VIRAVESLKGDGQLSACEVNLIHYEEMG--IPKDVAKLAIRHGMWGGVKKLNSGMKAY 342 (434)
Q Consensus 287 vIrpv~s~~~dG~~~ac~Vty~~~~DpG--IP~wlvN~av~~g~~~~lkkL~~alrkY 342 (434)
+|+|... + .|+++|++|.||| ||+|++|++++++++.|+++|++||++|
T Consensus 157 ~i~p~~~---~----~t~i~~~~~~DPgG~IP~wlvN~~~~~~~~~~l~~l~ka~~~y 207 (207)
T cd08910 157 AIESDGK---K----GSKVFMYYFDNPGGMIPSWLINWAAKNGVPNFLKDMQKACQNY 207 (207)
T ss_pred EEEeCCC---C----ceEEEEEEEeCCCCcchHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 9998731 2 3999999999996 9999999999999999999999999988
No 4
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=100.00 E-value=1.6e-40 Score=314.69 Aligned_cols=184 Identities=29% Similarity=0.476 Sum_probs=167.5
Q ss_pred CCCCcEEEEeccCCCcceEEEeecCC-CCCeEEEEEEEEcCCCHHHHHHHhcCchhhhhhhhhcceeEEEEEecCCCcEE
Q 013902 151 GEIEWQTLMEKSTPNMTYQAWRSEPE-TGPAVYRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMI 229 (434)
Q Consensus 151 g~~~We~v~dk~~~~~~ikVwrR~~e-sgl~~yRa~gv~edaspe~V~dll~D~e~R~~WD~~l~~~evLe~~~~dg~~I 229 (434)
+..+|+++++++ +|+||+|+.+ +++++||+++++.|+|++++++++.|.++|++||+++.++++|++...+++++
T Consensus 19 ~~~~W~l~~~~~----~i~Vy~r~~~~s~~~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~~~~i 94 (207)
T cd08911 19 EPDGWEPFIEKK----DMLVWRREHPGTGLYEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPETGSEI 94 (207)
T ss_pred cCCCcEEEEEcC----ceEEEEeccCCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCCCCEE
Confidence 455699999995 8999999765 88999999999988999999999999999999999999999999765457899
Q ss_pred EEEEEeeccccCCceeEEEEEEEec--CCEEEEEEeccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEE
Q 013902 230 VQWIKKFPFFCSDREYIIGRRIWEA--GKNYYCVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNL 307 (434)
Q Consensus 230 VY~~~k~PwPvS~RDfV~~Rri~~~--~~~yvivskSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty 307 (434)
+|+..++|||+++||||+.|+++.+ ++.++|++++++||.+|+++|+||++.+.|+|+|+|+++...+| |+++|
T Consensus 95 ~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~----~~~~~ 170 (207)
T cd08911 95 IYWEMQWPKPFANRDYVYVRRYIIDEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPG----FEFVL 170 (207)
T ss_pred EEEEEECCCCCCCccEEEEEEEEEcCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCC----eEEEE
Confidence 9999999999999999999997654 45678999999999999999999999999999999986432234 99999
Q ss_pred EEeecCC--CCHHHHHHHHhhchHHHHHHHHHHHHhh
Q 013902 308 IHYEEMG--IPKDVAKLAIRHGMWGGVKKLNSGMKAY 342 (434)
Q Consensus 308 ~~~~DpG--IP~wlvN~av~~g~~~~lkkL~~alrkY 342 (434)
++|+||| ||.|++|+++++++++||++|++||++|
T Consensus 171 ~~~~dPgG~IP~~lvN~~~~~~~~~~l~~l~~a~~~y 207 (207)
T cd08911 171 TYFDNPGVNIPSYITSWVAMSGMPDFLERLRNAALKY 207 (207)
T ss_pred EEEeCCCCccCHHHHHHHHHhhccHHHHHHHHHHhcC
Confidence 9999995 9999999999999999999999999987
No 5
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=100.00 E-value=4e-39 Score=306.93 Aligned_cols=206 Identities=20% Similarity=0.342 Sum_probs=188.7
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCcEEEEeccCCCcceEEEeecCC-CCCeEEEEEEEEcCCCHHHHHHHhcCchhhhhhh
Q 013902 132 HVVTENDLEHLLQLLERKDGEIEWQTLMEKSTPNMTYQAWRSEPE-TGPAVYRTRTVFEGATPELVRDFFWDDEFRRKWD 210 (434)
Q Consensus 132 ~~vtdeDf~~l~~lle~~dg~~~We~v~dk~~~~~~ikVwrR~~e-sgl~~yRa~gv~edaspe~V~dll~D~e~R~~WD 210 (434)
-+.|+++|+.|++++++.+ +|++.++++ ++++|+|+.+ ++++.||+++++++++++++++++.|.++|++||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~---~W~~~~~~~----gi~iy~r~~~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd 77 (222)
T cd08871 5 RLPTDADFEEFKKLCDSTD---GWKLKYNKN----NVKVWTKNPENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWD 77 (222)
T ss_pred cCCCHHHHHHHHHHhcCCC---CcEEEEcCC----CeEEEEeeCCCCceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhh
Confidence 4699999999999997754 499999985 8999999755 6789999999998899999999999999999999
Q ss_pred hhcceeEEEEEecCCCcEEEEEEEeeccccCCceeEEEEEEEecCCEEEEEEeccCCCCCCCCCCCeEeeeeeEEEEEEE
Q 013902 211 HMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWEAGKNYYCVTKGVPYPALPKRDKPRRVEHYFSSWVIRA 290 (434)
Q Consensus 211 ~~l~~~evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri~~~~~~yvivskSV~hp~~P~~~g~VRve~~~sgwvIrp 290 (434)
+++.++++|++.+ +++.|+|+..++|||+++||||+.|++...++.++++++|++||.+|+++|+||+..+.+||+|+|
T Consensus 78 ~~~~e~~~ie~~d-~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p 156 (222)
T cd08871 78 SNMIESFDICQLN-PNNDIGYYSAKCPKPLKNRDFVNLRSWLEFGGEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRP 156 (222)
T ss_pred hhhceeEEEEEcC-CCCEEEEEEeECCCCCCCCeEEEEEEEEeCCCEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEE
Confidence 9999999999875 567999999999999999999999998887899999999999999999999999999999999999
Q ss_pred eecCCCCCCccceEEEEEEeecCC--CCHHHHHHHHhhchHHHHHHHHHHHHhhHhhhcCCCCC
Q 013902 291 VESLKGDGQLSACEVNLIHYEEMG--IPKDVAKLAIRHGMWGGVKKLNSGMKAYQNARKSDSSS 352 (434)
Q Consensus 291 v~s~~~dG~~~ac~Vty~~~~DpG--IP~wlvN~av~~g~~~~lkkL~~alrkY~~~R~~~~~~ 352 (434)
++. + .|+|+|+.|.||| ||+|++|+++.+.++.++++|+++|++|+++++++.|-
T Consensus 157 ~~~----~---~t~vt~~~~~Dp~G~IP~~lvN~~~~~~~~~~l~~l~k~~~~y~~~~~~~~~~ 213 (222)
T cd08871 157 TGP----K---GCTLTYVTQNDPKGSLPKWVVNKATTKLAPKVMKKLHKAALKYPEWKAKNNPE 213 (222)
T ss_pred CCC----C---CEEEEEEEecCCCCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 842 2 3999999999995 99999999999999999999999999999998877653
No 6
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=100.00 E-value=1.1e-33 Score=273.71 Aligned_cols=206 Identities=17% Similarity=0.275 Sum_probs=169.7
Q ss_pred CHHHHHHHHHHHhcCCCCCCcEEEEeccCCCcceEEEeecCC-CCCe--EEEEEEEEcCCCHHHHHHHhcCchhhhhhhh
Q 013902 135 TENDLEHLLQLLERKDGEIEWQTLMEKSTPNMTYQAWRSEPE-TGPA--VYRTRTVFEGATPELVRDFFWDDEFRRKWDH 211 (434)
Q Consensus 135 tdeDf~~l~~lle~~dg~~~We~v~dk~~~~~~ikVwrR~~e-sgl~--~yRa~gv~edaspe~V~dll~D~e~R~~WD~ 211 (434)
.|+-+.+.++++.+..++.+|+++++++ +++||+|+.+ +++. .||+++++++++++++.++|.|.++|++||.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~W~l~~~~~----gikVy~r~~~~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~ 83 (235)
T cd08872 8 VDEKVQEQLTYALEDVGADGWQLFAEEG----EMKVYRREVEEDGVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWET 83 (235)
T ss_pred HHHHHHHHHHHHHccCCCCCCEEEEeCC----ceEEEEEECCCCCceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHh
Confidence 3566777777777777666899999985 9999999755 6665 7999999988999999999999999999999
Q ss_pred hcceeEEEEEecCCCcEEEEEEEeeccccCCceeEEEEEEEec--------CCEEEEEEeccCCCCCCCCCCCeEeeeee
Q 013902 212 MLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWEA--------GKNYYCVTKGVPYPALPKRDKPRRVEHYF 283 (434)
Q Consensus 212 ~l~~~evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri~~~--------~~~yvivskSV~hp~~P~~~g~VRve~~~ 283 (434)
++.++++|+.++ .++.|+|+..++|||+++||||+.+++... ++.|+++++|+.||.+|+++||||+....
T Consensus 84 ~~~~~~vie~l~-~~~~I~Y~~~k~PwPvs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~ 162 (235)
T cd08872 84 TLENFHVVETLS-QDTLIFHQTHKRVWPAAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTV 162 (235)
T ss_pred hhheeEEEEecC-CCCEEEEEEccCCCCCCCcEEEEEEEEEecCccccccCCCeEEEEEecccCccCCCCCCeEEEEEEe
Confidence 999999999876 467899999999999999999999887542 26789999999999999999999999743
Q ss_pred ----EEEEEEEeec---CCCCCCccceEEEEEEeecCC--CCHHHHHHHHhhchHHHHHHHHHHHHhhHhhhcCCCCC
Q 013902 284 ----SSWVIRAVES---LKGDGQLSACEVNLIHYEEMG--IPKDVAKLAIRHGMWGGVKKLNSGMKAYQNARKSDSSS 352 (434)
Q Consensus 284 ----sgwvIrpv~s---~~~dG~~~ac~Vty~~~~DpG--IP~wlvN~av~~g~~~~lkkL~~alrkY~~~R~~~~~~ 352 (434)
++|++.|... .++|| .|+++|+.|.||| ||+|++|+++++..|+||+++++.+ ..+.++.|+
T Consensus 163 ~~~~~~~i~~~~g~~~~t~~~~---~~~ity~~~~dPgG~iP~wvvn~~~k~~~P~~l~~~~~~~----~~~~~~~~~ 233 (235)
T cd08872 163 AMICQTFVSPPDGNQEITRDNI---LCKITYVANVNPGGWAPASVLRAVYKREYPKFLKRFTSYV----QEKTKGKPI 233 (235)
T ss_pred eeeeeeeeecCCCcccccCCCC---eEEEEEEEEeCCCCCccHHHHHHHHHhhchHHHHHHHHHH----HHhcCCCcc
Confidence 3333332110 01234 4999999999996 9999999999999999998876654 446666655
No 7
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=100.00 E-value=6.1e-34 Score=268.86 Aligned_cols=193 Identities=15% Similarity=0.223 Sum_probs=168.9
Q ss_pred CHHHHHHHHHHHhcCCCCCCcEEEEeccCCCcceEEEeecCCCCCeEEEEEEEEcCCCHHHHHH-HhcCchhhhhhhhhc
Q 013902 135 TENDLEHLLQLLERKDGEIEWQTLMEKSTPNMTYQAWRSEPETGPAVYRTRTVFEGATPELVRD-FFWDDEFRRKWDHML 213 (434)
Q Consensus 135 tdeDf~~l~~lle~~dg~~~We~v~dk~~~~~~ikVwrR~~esgl~~yRa~gv~edaspe~V~d-ll~D~e~R~~WD~~l 213 (434)
.++.++.++++++.. +|++.++++ ++++||+|..++..+.||+++++ +++++++++ ++.|.++|++||+++
T Consensus 10 ~~~~~~~~~~~~~~~----~W~l~~~~~---~~i~i~~r~~~~~~~~~k~~~~i-~~~~~~v~~~l~~d~~~~~~Wd~~~ 81 (208)
T cd08868 10 GAEALARAWSILTDP----GWKLEKNTT---WGDVVYSRNVPGVGKVFRLTGVL-DCPAEFLYNELVLNVESLPSWNPTV 81 (208)
T ss_pred HHHHHHHHHHHhcCC----CceEEEecC---CCCEEEEEEcCCCceEEEEEEEE-cCCHHHHHHHHHcCccccceecCcc
Confidence 456777888876642 599999873 38999999766445899999999 599999986 567999999999999
Q ss_pred ceeEEEEEecCCCcEEEEEEEeec--cccCCceeEEEEEEEecCCEEEEEEeccCCCCCCCCCCCeEeeeeeEEEEEEEe
Q 013902 214 AYVKTLEECPLTGTMIVQWIKKFP--FFCSDREYIIGRRIWEAGKNYYCVTKGVPYPALPKRDKPRRVEHYFSSWVIRAV 291 (434)
Q Consensus 214 ~~~evLe~~~~dg~~IVY~~~k~P--wPvS~RDfV~~Rri~~~~~~yvivskSV~hp~~P~~~g~VRve~~~sgwvIrpv 291 (434)
.++++|+.++ +++.|+|++.+.| ||+++||||+.|++...++.|+++.+|++||.+|+++|+||++.+.+||.|+|+
T Consensus 82 ~~~~~i~~~d-~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~ 160 (208)
T cd08868 82 LECKIIQVID-DNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPL 160 (208)
T ss_pred cceEEEEEec-CCcEEEEEEecCcCCCcccccceEEEEEEEecCCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEEC
Confidence 9999999876 5678999888765 899999999999988888889999999999999999999999999999999999
Q ss_pred ecCCCCCCccceEEEEEEeecCC--CCHHHHHHHHhhchHHHHHHHHHHHHh
Q 013902 292 ESLKGDGQLSACEVNLIHYEEMG--IPKDVAKLAIRHGMWGGVKKLNSGMKA 341 (434)
Q Consensus 292 ~s~~~dG~~~ac~Vty~~~~DpG--IP~wlvN~av~~g~~~~lkkL~~alrk 341 (434)
++++ ..|.|+|+.|.||| ||.|++|+++.+++++++++|+++|.+
T Consensus 161 ~~~~-----~~t~v~~~~~~Dp~G~iP~~lvN~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08868 161 PNNP-----NKCNFTWLLNTDLKGWLPQYLVDQALASVLLDFMKHLRKRIAT 207 (208)
T ss_pred CCCC-----CceEEEEEEEECCCCCCcceeeehhhHHHHHHHHHHHHHHHhh
Confidence 6421 24999999999994 999999999999999999999999875
No 8
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=100.00 E-value=1.2e-33 Score=268.11 Aligned_cols=193 Identities=17% Similarity=0.284 Sum_probs=170.8
Q ss_pred CCHHHHHHHHHHHhcCCCCCCcEEEEeccCCCcceEEEeec-CCCCCeEEEEEEEEcCCCHHHHHHHhcCchhhhhhhhh
Q 013902 134 VTENDLEHLLQLLERKDGEIEWQTLMEKSTPNMTYQAWRSE-PETGPAVYRTRTVFEGATPELVRDFFWDDEFRRKWDHM 212 (434)
Q Consensus 134 vtdeDf~~l~~lle~~dg~~~We~v~dk~~~~~~ikVwrR~-~esgl~~yRa~gv~edaspe~V~dll~D~e~R~~WD~~ 212 (434)
+.++-+++++++.+..+ +|+..++++ +++||+|. .+...+.||++|+++ ++|+++++++.|.+.|.+||++
T Consensus 6 ~~~~~~~~~l~~~~~~~---gWk~~k~~~----~~~v~~k~~~~~~gkl~k~egvi~-~~~e~v~~~l~~~e~r~~Wd~~ 77 (204)
T cd08904 6 IAQETSQEVLGYSRDTS---GWKVVKTSK----KITVSWKPSRKYHGNLYRVEGIIP-ESPAKLIQFMYQPEHRIKWDKS 77 (204)
T ss_pred HHHHHHHHHHhhhhccc---CCeEEecCC----ceEEEEEEcCCCCceEEEEEEEec-CCHHHHHHHHhccchhhhhccc
Confidence 45677888888877654 499998774 89999995 567889999999995 9999999999999999999999
Q ss_pred cceeEEEEEecCCCcEEEEEEEe-ecc-ccCCceeEEEEEEEe-cCCEEEEEEeccCCCCCCCCCCCeEeeeeeEEEEEE
Q 013902 213 LAYVKTLEECPLTGTMIVQWIKK-FPF-FCSDREYIIGRRIWE-AGKNYYCVTKGVPYPALPKRDKPRRVEHYFSSWVIR 289 (434)
Q Consensus 213 l~~~evLe~~~~dg~~IVY~~~k-~Pw-PvS~RDfV~~Rri~~-~~~~yvivskSV~hp~~P~~~g~VRve~~~sgwvIr 289 (434)
+.++++||+++. +++|+|.+.+ +|+ .+|+||||..|++.+ +++.|++..+|++||.+|+++||||++++++||+|+
T Consensus 78 ~~~~~iie~Id~-~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~ 156 (204)
T cd08904 78 LQVYKMLQRIDS-DTFICHTITQSFAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCS 156 (204)
T ss_pred ccceeeEEEeCC-CcEEEEEecccccCCcccCceEEEEEEEEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEE
Confidence 999999999874 5789998866 354 489999999999865 788899999999999999999999999999999999
Q ss_pred EeecCCCCCCccceEEEEEEeecC-C-CCHHHHHHHHhhchHHHHHHHHHHHH
Q 013902 290 AVESLKGDGQLSACEVNLIHYEEM-G-IPKDVAKLAIRHGMWGGVKKLNSGMK 340 (434)
Q Consensus 290 pv~s~~~dG~~~ac~Vty~~~~Dp-G-IP~wlvN~av~~g~~~~lkkL~~alr 340 (434)
|+++++ +.|.++++.|.|| | ||+|++|.++++.|.+|+.+|+++++
T Consensus 157 pl~~~p-----~~t~l~~~~~~DlkG~lP~~vv~~~~~~~~~~f~~~~~~~~~ 204 (204)
T cd08904 157 PLPENP-----AYSKLVMFVQPELRGNLSRSVIEKTMPTNLVNLILDAKDGIK 204 (204)
T ss_pred ECCCCC-----CceEEEEEEEeCCCCCCCHHHHHHHhHHHHHHHHHHHHHhcC
Confidence 997653 2499999999999 6 99999999999999999999999873
No 9
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=100.00 E-value=1.4e-33 Score=268.21 Aligned_cols=192 Identities=16% Similarity=0.221 Sum_probs=169.3
Q ss_pred CHHHHHHHHHHHhcCCCCCCcEEEEeccCCCcceEEEeecCC-CCCeEEEEEEEEcCCCHHHHH-HHhcCchhhhhhhhh
Q 013902 135 TENDLEHLLQLLERKDGEIEWQTLMEKSTPNMTYQAWRSEPE-TGPAVYRTRTVFEGATPELVR-DFFWDDEFRRKWDHM 212 (434)
Q Consensus 135 tdeDf~~l~~lle~~dg~~~We~v~dk~~~~~~ikVwrR~~e-sgl~~yRa~gv~edaspe~V~-dll~D~e~R~~WD~~ 212 (434)
.+|-|+.++++|+..++ |++.++++ ++++||+++.+ ++ +.||+++++ ++|+++++ +++.|.++|++||++
T Consensus 10 ~~~~~~~~~~~l~~~~~---W~l~~~~~---~gi~V~s~~~~~~~-~~fk~~~~v-~~~~~~l~~~ll~D~~~~~~W~~~ 81 (209)
T cd08906 10 GKEALAVVEQILAQEEN---WKFEKNND---NGDTVYTLEVPFHG-KTFILKAFM-QCPAELVYQEVILQPEKMVLWNKT 81 (209)
T ss_pred HHHHHHHHHHHhhcccC---CEEEEecC---CCCEEEEeccCCCC-cEEEEEEEE-cCCHHHHHHHHHhChhhccccCcc
Confidence 46889999999988555 99987642 38999998655 55 999999999 59999997 689999999999999
Q ss_pred cceeEEEEEecCCCcEEEEEEEeecc---ccCCceeEEEEEEEecCCEEEEEEeccCCCCCCCCCCCeEeeeeeEEEEEE
Q 013902 213 LAYVKTLEECPLTGTMIVQWIKKFPF---FCSDREYIIGRRIWEAGKNYYCVTKGVPYPALPKRDKPRRVEHYFSSWVIR 289 (434)
Q Consensus 213 l~~~evLe~~~~dg~~IVY~~~k~Pw---PvS~RDfV~~Rri~~~~~~yvivskSV~hp~~P~~~g~VRve~~~sgwvIr 289 (434)
+.++++|++++ +++.|+| ..+.|| |+++||||+.|++.++++.|+++..++.|+.+|+++||||++++.+||.|.
T Consensus 82 ~~~~~vi~~~~-~~~~i~Y-~v~~p~~~~pv~~RDfV~~r~~~~~~~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~ 159 (209)
T cd08906 82 VSACQVLQRVD-DNTLVSY-DVAAGAAGGVVSPRDFVNVRRIERRRDRYVSAGISTTHSHKPPLSKYVRGENGPGGFVVL 159 (209)
T ss_pred chhhhheeecc-CCcEEEE-EEccccccCCCCCCceEEEEEEEecCCcEEEEEEEEecCCCCCCCCeEEEeeeccEEEEE
Confidence 99999999876 3467787 778887 899999999999988888899999999999999999999999999999999
Q ss_pred EeecCCCCCCccceEEEEEEeecCC--CCHHHHHHHHhhchHHHHHHHHHHHHh
Q 013902 290 AVESLKGDGQLSACEVNLIHYEEMG--IPKDVAKLAIRHGMWGGVKKLNSGMKA 341 (434)
Q Consensus 290 pv~s~~~dG~~~ac~Vty~~~~DpG--IP~wlvN~av~~g~~~~lkkL~~alrk 341 (434)
|.+.. ++ .|+|+|+.|.||| ||+|++|.++.++|..|+++|++.+..
T Consensus 160 ~~~~~--~~---~t~vt~~~~~Dp~G~lP~~lvN~~~~~~~~~~~~~LR~~~~~ 208 (209)
T cd08906 160 KSASN--PS---VCTFIWILNTDLKGRLPRYLIHQSLAATMFEFASHLRQRIRD 208 (209)
T ss_pred ECCCC--CC---ceEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 97432 23 4999999999995 999999999999999999999998753
No 10
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=100.00 E-value=2.3e-32 Score=259.57 Aligned_cols=192 Identities=15% Similarity=0.194 Sum_probs=167.1
Q ss_pred CCHHHHHHHHHHHhcCCCCCCcEEEEeccCCCcceEEEeecCC-CCCeEEEEEEEEcCCCHHHHH-HHhcCchhhhhhhh
Q 013902 134 VTENDLEHLLQLLERKDGEIEWQTLMEKSTPNMTYQAWRSEPE-TGPAVYRTRTVFEGATPELVR-DFFWDDEFRRKWDH 211 (434)
Q Consensus 134 vtdeDf~~l~~lle~~dg~~~We~v~dk~~~~~~ikVwrR~~e-sgl~~yRa~gv~edaspe~V~-dll~D~e~R~~WD~ 211 (434)
..++.|+.++++++..+ +|++.+..+ ++++||+|..+ ++ +.||+++++ ++++++++ .++.|.+.+++|++
T Consensus 9 ~~~~~~~~~~~~~~~~~---~W~~~~~~~---~gi~v~s~~~~~~~-k~~k~e~~i-~~~~~~l~~~l~~d~e~~~~W~~ 80 (209)
T cd08905 9 QGEEALQKSLSILQDQE---GWKTEIVAE---NGDKVLSKVVPDIG-KVFRLEVVV-DQPLDNLYSELVDRMEQMGEWNP 80 (209)
T ss_pred HHHHHHHHHHHHhcccc---CCEEEEecC---CCCEEEEEEcCCCC-cEEEEEEEe-cCCHHHHHHHHHhchhhhceecc
Confidence 45788999999986543 499996422 48899999655 55 999999999 59999999 56678899999999
Q ss_pred hcceeEEEEEecCCCcEEEEEEEeeccc---cCCceeEEEEEEEecCCEEEEEEeccCCCCCCCCCCCeEeeeeeEEEEE
Q 013902 212 MLAYVKTLEECPLTGTMIVQWIKKFPFF---CSDREYIIGRRIWEAGKNYYCVTKGVPYPALPKRDKPRRVEHYFSSWVI 288 (434)
Q Consensus 212 ~l~~~evLe~~~~dg~~IVY~~~k~PwP---vS~RDfV~~Rri~~~~~~yvivskSV~hp~~P~~~g~VRve~~~sgwvI 288 (434)
++.++++|++++ +++.|+|+ ...||| +++||||..|++.+.++.++++..++.||.+|+++||||+++..++|.|
T Consensus 81 ~~~~~~vl~~id-~~~~i~y~-~~~p~p~~~vs~RD~V~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l 158 (209)
T cd08905 81 NVKEVKILQRIG-KDTLITHE-VAAETAGNVVGPRDFVSVRCAKRRGSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVL 158 (209)
T ss_pred cchHHHHHhhcC-CCceEEEE-EeccCCCCccCccceEEEEEEEEcCCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEE
Confidence 999999999876 45788887 678887 9999999998888878888888899999999999999999999999999
Q ss_pred EEeecCCCCCCccceEEEEEEeecCC--CCHHHHHHHHhhchHHHHHHHHHHHH
Q 013902 289 RAVESLKGDGQLSACEVNLIHYEEMG--IPKDVAKLAIRHGMWGGVKKLNSGMK 340 (434)
Q Consensus 289 rpv~s~~~dG~~~ac~Vty~~~~DpG--IP~wlvN~av~~g~~~~lkkL~~alr 340 (434)
+|+++++ | .|+|+|+.|.||| ||+|++|.++.++|..|+++|++.+.
T Consensus 159 ~p~~~~~--~---~t~v~~~~~~DpkG~iP~~lvN~~~~~~~~~~~~~Lr~~~~ 207 (209)
T cd08905 159 RPLAGDP--S---KTKLTWLLSIDLKGWLPKSIINQVLSQTQVDFANHLRQRMA 207 (209)
T ss_pred EECCCCC--C---ceEEEEEEeecCCCCCCHHHHHHHhHHhHHHHHHHHHHHHh
Confidence 9996432 3 4999999999995 99999999999999999999998875
No 11
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=100.00 E-value=6.1e-32 Score=252.02 Aligned_cols=192 Identities=21% Similarity=0.258 Sum_probs=164.2
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEeccCCCcceEEEeecCC--CCCeEEEEEEEEcCCCHH-HHHHHhcCchhhhhhhhhc
Q 013902 137 NDLEHLLQLLERKDGEIEWQTLMEKSTPNMTYQAWRSEPE--TGPAVYRTRTVFEGATPE-LVRDFFWDDEFRRKWDHML 213 (434)
Q Consensus 137 eDf~~l~~lle~~dg~~~We~v~dk~~~~~~ikVwrR~~e--sgl~~yRa~gv~edaspe-~V~dll~D~e~R~~WD~~l 213 (434)
+.++.+.+..... .+|++.++.+ +++++|+|..+ ++++.||++++++ ++++ .+.+++.|.++|++||+++
T Consensus 6 ~~~~~~~~~~~~~---~~W~~~~~~~---~~~~~~~~~~~~~~~~~~~k~~~~v~-~~~~~~~~~~~~d~~~r~~Wd~~~ 78 (206)
T smart00234 6 AAAELLKMAAASE---PGWVLSSENE---NGDEVRSILSPGRSPGEASRAVGVVP-MVCADLVEELMDDLRYRPEWDKNV 78 (206)
T ss_pred HHHHHHHHhhCCC---CccEEccccC---CcceEEEEccCCCCceEEEEEEEEEe-cChHHHHHHHHhcccchhhCchhc
Confidence 4455555554443 3499999722 36788888543 5789999999997 5666 5888999999999999999
Q ss_pred ceeEEEEEecCCCcEEEEEEEeecc-ccCCceeEEEEEEEe-cCCEEEEEEeccCCCCCCCCCCCeEeeeeeEEEEEEEe
Q 013902 214 AYVKTLEECPLTGTMIVQWIKKFPF-FCSDREYIIGRRIWE-AGKNYYCVTKGVPYPALPKRDKPRRVEHYFSSWVIRAV 291 (434)
Q Consensus 214 ~~~evLe~~~~dg~~IVY~~~k~Pw-PvS~RDfV~~Rri~~-~~~~yvivskSV~hp~~P~~~g~VRve~~~sgwvIrpv 291 (434)
.++++|+..+ +++.++|++.++|| |+++||||+.|++.. .++.++++.+|+.||.+|+++|+||++.+.+||+|+|+
T Consensus 79 ~~~~~ie~~~-~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~ 157 (206)
T smart00234 79 AKAETLEVID-NGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPL 157 (206)
T ss_pred ccEEEEEEEC-CCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEEC
Confidence 9999999876 56799999999999 999999999999876 56778889999999999999999999999999999998
Q ss_pred ecCCCCCCccceEEEEEEeecCC--CCHHHHHHHHhhchHHHHHHHHHHHHhhH
Q 013902 292 ESLKGDGQLSACEVNLIHYEEMG--IPKDVAKLAIRHGMWGGVKKLNSGMKAYQ 343 (434)
Q Consensus 292 ~s~~~dG~~~ac~Vty~~~~DpG--IP~wlvN~av~~g~~~~lkkL~~alrkY~ 343 (434)
++ | .|+|+|+.|.||| ||.|++|.++.++++.+++.|++++++..
T Consensus 158 ~~----~---~t~vt~~~~~D~~G~iP~~lvn~~~~~~~~~~~~~~~~~~~~~~ 204 (206)
T smart00234 158 GN----G---PSKVTWVSHADLKGWLPHWLVRSLIKSGLAEFAKTWVATLQKHC 204 (206)
T ss_pred CC----C---CeEEEEEEEEecCCCccceeehhhhhhhHHHHHHHHHHHHHHHh
Confidence 53 3 2999999999995 99999999999999999999988887653
No 12
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=100.00 E-value=4.6e-31 Score=250.46 Aligned_cols=191 Identities=16% Similarity=0.147 Sum_probs=160.2
Q ss_pred CHHHHHHHHHHHhcCCCCCCcEEEEeccCCCcceEEEeecC-CCCCeEEEEEEEEcCCCHHHHHHHhcCc--hhhhhhhh
Q 013902 135 TENDLEHLLQLLERKDGEIEWQTLMEKSTPNMTYQAWRSEP-ETGPAVYRTRTVFEGATPELVRDFFWDD--EFRRKWDH 211 (434)
Q Consensus 135 tdeDf~~l~~lle~~dg~~~We~v~dk~~~~~~ikVwrR~~-esgl~~yRa~gv~edaspe~V~dll~D~--e~R~~WD~ 211 (434)
.++-++.++++.+. .++|++.++++ +++||+|+. +...+.||++|++ ++++++++++|.|. .+|++||+
T Consensus 7 ~~~~~~~~l~~~~~---~~~W~~~~~~~----~i~v~~~~~~~~~~~~~k~e~~i-~~s~~~~~~~l~d~~~~~r~~W~~ 78 (208)
T cd08903 7 AESVADKMLLYRRD---ESGWKTCRRTN----EVAVSWRPSAEFAGNLYKGEGIV-YATLEQVWDCLKPAAGGLRVKWDQ 78 (208)
T ss_pred HHHHHHHHHhhhcc---ccCCEEEEcCC----CEEEEeeecCCCCCcEEEEEEEe-cCCHHHHHHHHHhccchhhhhhhh
Confidence 35566677776643 23499999874 999999953 4555779999999 59999999999875 47799999
Q ss_pred hcceeEEEEEecCCCcEEEEEEEeeccc----cCCceeEEEEEEEec-CCEEEEEEeccCCCCCCCCCCCeEeeeeeEEE
Q 013902 212 MLAYVKTLEECPLTGTMIVQWIKKFPFF----CSDREYIIGRRIWEA-GKNYYCVTKGVPYPALPKRDKPRRVEHYFSSW 286 (434)
Q Consensus 212 ~l~~~evLe~~~~dg~~IVY~~~k~PwP----vS~RDfV~~Rri~~~-~~~yvivskSV~hp~~P~~~g~VRve~~~sgw 286 (434)
++.++++||+++ +++.++|+ ++||| +++||||+.|++.+. ++.+++..++++||.+|+++||||++.+.+||
T Consensus 79 ~~~~~~vle~id-~~~~i~~~--~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~ 155 (208)
T cd08903 79 NVKDFEVVEAIS-DDVSVCRT--VTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGC 155 (208)
T ss_pred ccccEEEEEEec-CCEEEEEE--ecchhcCCCcCCCceEEEEEEEecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEE
Confidence 999999999887 34566665 67776 999999999888654 45667778899999999999999999999999
Q ss_pred EEEEeecCCCCCCccceEEEEEEeecCC--CCHHHHHHHHhhchHHHHHHHHHHHHh
Q 013902 287 VIRAVESLKGDGQLSACEVNLIHYEEMG--IPKDVAKLAIRHGMWGGVKKLNSGMKA 341 (434)
Q Consensus 287 vIrpv~s~~~dG~~~ac~Vty~~~~DpG--IP~wlvN~av~~g~~~~lkkL~~alrk 341 (434)
.++|++.++ + .|+|+|+.|.||| ||+|++|.++.++|..|+++|++++++
T Consensus 156 ~~~~~~~~~--~---~t~v~~~~~~DpkG~iP~~lvn~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08903 156 FCEPVPGEP--D---KTQLVSFFQTDLSGYLPQTVVDSFFPASMAEFYNNLTKAVKA 207 (208)
T ss_pred EEEECCCCC--C---ceEEEEEEEeccCCCcCHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 999997532 2 4999999999995 999999999999999999999998865
No 13
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=99.98 E-value=5.4e-31 Score=250.22 Aligned_cols=168 Identities=14% Similarity=0.124 Sum_probs=149.3
Q ss_pred CCCcEEEEeccCCCcceEEEeecCCCCCeEEEEEEEEcCCCHHHHHHHhcCchhhhhhhhhcceeEEEEEecCCCcEEEE
Q 013902 152 EIEWQTLMEKSTPNMTYQAWRSEPETGPAVYRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQ 231 (434)
Q Consensus 152 ~~~We~v~dk~~~~~~ikVwrR~~esgl~~yRa~gv~edaspe~V~dll~D~e~R~~WD~~l~~~evLe~~~~dg~~IVY 231 (434)
..+|++..+++ +|+||+|+.+..+..||+++++ ++++++++++|.|.++|++||+++.++++|++.+ +++.++|
T Consensus 21 ~~gW~l~~~~~----gI~Vy~k~~~~~~~~~~ge~~v-~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~~~-~d~~i~y 94 (205)
T cd08874 21 TAGWSYQCLEK----DVVIYYKVFNGTYHGFLGAGVI-KAPLATVWKAVKDPRTRFLYDTMIKTARIHKTFT-EDICLVY 94 (205)
T ss_pred cCCcEEEecCC----CEEEEEecCCCCcceEEEEEEE-cCCHHHHHHHHhCcchhhhhHHhhhheeeeeecC-CCeEEEE
Confidence 34599999995 9999999744478899999999 6999999999999999999999999999999765 4568899
Q ss_pred EEEeecccc--CCceeEEEEEEEecCCEEEEEEeccCCCCCCCCC-CCeEeeeeeEEEEEEEeecCCCCCCccceEEEEE
Q 013902 232 WIKKFPFFC--SDREYIIGRRIWEAGKNYYCVTKGVPYPALPKRD-KPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLI 308 (434)
Q Consensus 232 ~~~k~PwPv--S~RDfV~~Rri~~~~~~yvivskSV~hp~~P~~~-g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~ 308 (434)
++...|||+ ++||||+.+.+...++.+++..+|++||.+|+.+ ||||+++..|+|.|+|++.+ ++| .|+|+|+
T Consensus 95 ~~~~~Pwp~~~~~RDfV~l~~~~~~~~~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~-g~~---~t~vty~ 170 (205)
T cd08874 95 LVHETPLCLLKQPRDFCCLQVEAKEGELSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVE-GNQ---YTRVIYI 170 (205)
T ss_pred EEecCCCCCCCCCCeEEEEEEEEECCCcEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccC-CCC---cEEEEEE
Confidence 999999988 9999999988777788778999999999999986 99999999999999998654 234 4999999
Q ss_pred EeecCC---CCHHHHHHHHhhchH
Q 013902 309 HYEEMG---IPKDVAKLAIRHGMW 329 (434)
Q Consensus 309 ~~~DpG---IP~wlvN~av~~g~~ 329 (434)
.|.||| ||+|++|.++..++-
T Consensus 171 ~q~DPggg~iP~~l~N~~~~~~p~ 194 (205)
T cd08874 171 AQVALCGPDVPAQLLSSLSKRQPL 194 (205)
T ss_pred EEECCCCCCCCHHHHhHHHHhccH
Confidence 999994 999999999998663
No 14
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=99.98 E-value=1.2e-30 Score=246.20 Aligned_cols=190 Identities=18% Similarity=0.205 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEeccCCCcceEEEeecCC-CCCeEEEEEEEEcCCCHHHHHHHhcC--chhhhhhhhh
Q 013902 136 ENDLEHLLQLLERKDGEIEWQTLMEKSTPNMTYQAWRSEPE-TGPAVYRTRTVFEGATPELVRDFFWD--DEFRRKWDHM 212 (434)
Q Consensus 136 deDf~~l~~lle~~dg~~~We~v~dk~~~~~~ikVwrR~~e-sgl~~yRa~gv~edaspe~V~dll~D--~e~R~~WD~~ 212 (434)
++-.++++++++.. ++|++.++++ +++||+++.. ...+.||+++++ +++++++++++.| .++|++||+.
T Consensus 8 ~~~~~~~~~~~~~~---~~W~~~~~~~----~i~v~~~~~~~~~~~~~k~~~~i-~~~~~~v~~~l~d~~~~~r~~Wd~~ 79 (206)
T cd08867 8 EKLANEALQYINDT---DGWKVLKTVK----NITVSWKPSTEFTGHLYRAEGIV-DALPEKVIDVIIPPCGGLRLKWDKS 79 (206)
T ss_pred HHHHHHHHHHhcCc---CCcEEEEcCC----CcEEEEecCCCCCCEEEEEEEEE-cCCHHHHHHHHHhcCcccccccccc
Confidence 45567777777654 3499999884 8999999533 345789999999 5899999999999 8999999999
Q ss_pred cceeEEEEEecCCCcEEEEEEEeec--cccCCceeEEEEEEEe-cCCEEEEEEeccCCCCCCCCCCCeEeeeeeEEEEEE
Q 013902 213 LAYVKTLEECPLTGTMIVQWIKKFP--FFCSDREYIIGRRIWE-AGKNYYCVTKGVPYPALPKRDKPRRVEHYFSSWVIR 289 (434)
Q Consensus 213 l~~~evLe~~~~dg~~IVY~~~k~P--wPvS~RDfV~~Rri~~-~~~~yvivskSV~hp~~P~~~g~VRve~~~sgwvIr 289 (434)
+.++++|+.++ .++.++|+....| +++++||||+.+.+.+ +++.|++..+|++||.+|+.+|+||+++..+||.|+
T Consensus 80 ~~~~~~le~id-~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~ 158 (206)
T cd08867 80 LKHYEVLEKIS-EDLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCS 158 (206)
T ss_pred ccceEEEEEeC-CCeEEEEEEccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEE
Confidence 99999999886 4577777744332 2499999999887644 445788999999999999999999999999999999
Q ss_pred EeecCCCCCCccceEEEEEEeecC-C-CCHHHHHHHHhhchHHHHHHHHHHH
Q 013902 290 AVESLKGDGQLSACEVNLIHYEEM-G-IPKDVAKLAIRHGMWGGVKKLNSGM 339 (434)
Q Consensus 290 pv~s~~~dG~~~ac~Vty~~~~Dp-G-IP~wlvN~av~~g~~~~lkkL~~al 339 (434)
|.+.++ + .|+++|+.|.|| | ||+|++|.++.+++..|+++|++++
T Consensus 159 p~~~~~--~---~t~~~~~~~~DpkG~iP~~lvn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 159 PLKGSP--D---KSFLVLYVQTDLRGMIPQSLVESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred ECCCCC--C---ceEEEEEEEeccCCCCcHHHHHhhhhhhHHHHHHHHHHhc
Confidence 986432 2 499999999999 5 9999999999999999999998875
No 15
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=99.97 E-value=3.4e-30 Score=248.86 Aligned_cols=174 Identities=14% Similarity=0.192 Sum_probs=150.7
Q ss_pred CCcEEEEeccCCCcceEEEeecCCCCCeEEEEEEEEcCCCHHHHHHHhcCchhhhhhhhhcceeEEEEEecCCCcEEEEE
Q 013902 153 IEWQTLMEKSTPNMTYQAWRSEPETGPAVYRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQW 232 (434)
Q Consensus 153 ~~We~v~dk~~~~~~ikVwrR~~esgl~~yRa~gv~edaspe~V~dll~D~e~R~~WD~~l~~~evLe~~~~dg~~IVY~ 232 (434)
++|++..+++ +|+||+|+ ++++..||+++++ |+|+++++++|.|.++|++||+++.++++|++.+.+ +. +|+
T Consensus 56 ~~W~l~~dkd----gIkVytr~-~s~~l~fk~e~~v-dvs~~~l~~LL~D~~~r~~Wd~~~~e~~vI~qld~~-~~-vY~ 127 (236)
T cd08914 56 SGWEVTSTVE----KIKIYTLE-EHDVLSVWVEKHV-KRPAHLAYRLLSDFTKRPLWDPHFLSCEVIDWVSED-DQ-IYH 127 (236)
T ss_pred CCCEEEEccC----CEEEEEec-CCCcEEEEEEEEE-cCCHHHHHHHHhChhhhchhHHhhceEEEEEEeCCC-cC-EEE
Confidence 4599999995 99999995 7778999999999 699999999999999999999999999999988744 45 777
Q ss_pred EEeecc-ccCCceeEEEEEEE--e-cCCEEEEEEeccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEEE
Q 013902 233 IKKFPF-FCSDREYIIGRRIW--E-AGKNYYCVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLI 308 (434)
Q Consensus 233 ~~k~Pw-PvS~RDfV~~Rri~--~-~~~~yvivskSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~ 308 (434)
+.+.|| |+++||||+.+.+. . +++.|++..+|++||.+|+++||||++.+.+||.|+|+. +| .|+|+|+
T Consensus 128 ~~~pPw~Pvk~RD~V~~~s~~~~~~dg~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~~I~pl~----~~---~~~VtY~ 200 (236)
T cd08914 128 ITCPIVNNDKPKDLVVLVSRRKPLKDGNTYVVAVKSVILPSVPPSPQYIRSEIICAGFLIHAID----SN---SCTVSYF 200 (236)
T ss_pred EecCCCCCCCCceEEEEEEEEecCCCCCEEEEEEeecccccCCCCCCcEEeEEEEEEEEEEEcC----CC---cEEEEEE
Confidence 889999 99999999987764 3 444699999999999999999999999999999999984 22 3999999
Q ss_pred EeecCC-CCHHHHHHHHhhchHHHHHHHHHHHHhhHh
Q 013902 309 HYEEMG-IPKDVAKLAIRHGMWGGVKKLNSGMKAYQN 344 (434)
Q Consensus 309 ~~~DpG-IP~wlvN~av~~g~~~~lkkL~~alrkY~~ 344 (434)
.|.||| ||.|++|.+ |....+..--++|.+|..
T Consensus 201 ~~~dPg~lp~~~~n~~---~~~~~~~~~~~~~~~~~~ 234 (236)
T cd08914 201 NQISASILPYFAGNLG---GWSKSIEETAASCIQFLE 234 (236)
T ss_pred EEcCCccchheEEecc---hhhhHHHHHHHHHHHHHh
Confidence 999999 999999987 555555555567777653
No 16
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=99.97 E-value=3.7e-30 Score=242.41 Aligned_cols=176 Identities=16% Similarity=0.265 Sum_probs=155.4
Q ss_pred CCCcEEEEeccCCCcceEEEee-cCCCCCeEEEEEEEEcCCCHHHHHHHhcCchhhhhhhhhcceeEEEEEecCCCcEEE
Q 013902 152 EIEWQTLMEKSTPNMTYQAWRS-EPETGPAVYRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIV 230 (434)
Q Consensus 152 ~~~We~v~dk~~~~~~ikVwrR-~~esgl~~yRa~gv~edaspe~V~dll~D~e~R~~WD~~l~~~evLe~~~~dg~~IV 230 (434)
..+|++.++++ ++.+|+| .++++++.||++|+++ ..+++|++.+.+..+|.+||++++++++||+++ +++.|+
T Consensus 22 ~~~Wkl~k~~~----~~~v~~k~~~ef~gkl~R~Egvv~-~~~~ev~d~v~~~~~r~~Wd~~v~~~~Iie~Id-~dt~I~ 95 (202)
T cd08902 22 EEEWRVAKKSK----DVTVWRKPSEEFGGYLYKAQGVVE-DVYNRIVDHIRPGPYRLDWDSLMTSMDIIEEFE-ENCCVM 95 (202)
T ss_pred ccCcEEEEeCC----CEEEEEecCCcCCCceEEEEEEec-CCHHHHHHHHhcccchhcccchhhheeHhhhhc-CCcEEE
Confidence 34699999984 8999999 5679999999999995 899999999999999999999999999999987 467887
Q ss_pred EEEEe-ecc-ccCCceeEEEEEEEecCCEEEEEEeccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEEE
Q 013902 231 QWIKK-FPF-FCSDREYIIGRRIWEAGKNYYCVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLI 308 (434)
Q Consensus 231 Y~~~k-~Pw-PvS~RDfV~~Rri~~~~~~yvivskSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~ 308 (434)
++++. .|+ .+|+||||..|++.+.++.++.+..|++|+..|+ ||||++++++||+++|+++++ +.|.++++
T Consensus 96 ~yvt~~~~~~iISpRDFVdv~~~~~~~d~~~s~gvs~~~~~~pp--g~VRgen~p~g~i~~Pl~~~p-----~k~~~t~~ 168 (202)
T cd08902 96 RYTTAGQLLNIISPREFVDFSYTTQYEDGLLSCGVSIEYEEARP--NFVRGFNHPCGWFCVPLKDNP-----SHSLLTGY 168 (202)
T ss_pred EEEcccCCcCccCccceEEEEEEEEeCCCeEEEEeeecCCCCCC--CeEeecccccEEEEEECCCCC-----CceEEEEE
Confidence 55544 555 6899999999998776665677899999998877 999999999999999997653 46999999
Q ss_pred EeecC-C-CCHHHHHHHHhhchHHHHHHHHHHHH
Q 013902 309 HYEEM-G-IPKDVAKLAIRHGMWGGVKKLNSGMK 340 (434)
Q Consensus 309 ~~~Dp-G-IP~wlvN~av~~g~~~~lkkL~~alr 340 (434)
.|.|+ | ||++++|.+++++|.+|+.+|+++++
T Consensus 169 lq~DLkG~LPqsiIdq~~~~~~~~F~~~Lrk~~~ 202 (202)
T cd08902 169 IQTDLRGMLPQSAVDTAMASTLVNFYSDLKKALK 202 (202)
T ss_pred EEecCCCCccHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 99999 6 99999999999999999999998863
No 17
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=99.97 E-value=1.4e-29 Score=244.74 Aligned_cols=191 Identities=14% Similarity=0.140 Sum_probs=158.4
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCcEEEEeccCCCcceEEEeecCCCCCeEEEEEEEEcCCCHHHHHHHhcCchhhhhhhh
Q 013902 132 HVVTENDLEHLLQLLERKDGEIEWQTLMEKSTPNMTYQAWRSEPETGPAVYRTRTVFEGATPELVRDFFWDDEFRRKWDH 211 (434)
Q Consensus 132 ~~vtdeDf~~l~~lle~~dg~~~We~v~dk~~~~~~ikVwrR~~esgl~~yRa~gv~edaspe~V~dll~D~e~R~~WD~ 211 (434)
-+++...++.|..+.+ .++|++..+++ +|+||+|+ +++...||+++++ ++++++++++|.|.++|++||+
T Consensus 38 ~~~~~~~~~~l~~l~~----~~~W~l~~~k~----gIkVytr~-~s~~l~fk~e~~v-d~s~~~v~dlL~D~~~R~~WD~ 107 (235)
T cd08873 38 MYLSYGNVTALKRLAA----KSDWTVASSTT----SVTLYTLE-QDGVLSFCVELKV-QTCASDAFDLLSDPFKRPEWDP 107 (235)
T ss_pred EEEeeCCHHHHhhccc----cCCCEEEEcCC----CEEEEEec-CCCceEEEEEEEe-cCCHHHHHHHHhCcchhhhhhh
Confidence 4566666776666543 23599999995 99999997 6778999999999 6999999999999999999999
Q ss_pred hcceeEEEEEecCCCcEEEEEEEeeccccCCceeEEEEEEEe---cCCEEEEEEeccCCCCCCCCCCCeEeeeeeEEEEE
Q 013902 212 MLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWE---AGKNYYCVTKGVPYPALPKRDKPRRVEHYFSSWVI 288 (434)
Q Consensus 212 ~l~~~evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri~~---~~~~yvivskSV~hp~~P~~~g~VRve~~~sgwvI 288 (434)
++.++++|++++ +++.++|++..+|||++|||||+.+.+.+ +++.|+|..+|++||.+|+++||||++...+||.|
T Consensus 108 ~~~e~evI~~id-~d~~iyy~~~p~PwPvk~RDfV~~~s~~~~~~~~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I 186 (235)
T cd08873 108 HGRSCEEVKRVG-EDDGIYHTTMPSLTSEKPNDFVLLVSRRKPATDGDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVI 186 (235)
T ss_pred cccEEEEEEEeC-CCcEEEEEEcCCCCCCCCceEEEEEEEEeccCCCCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEE
Confidence 999999999876 34678888889999999999999988753 34568999999999999999999999999999999
Q ss_pred EEeecCCCCCCccceEEEEEEeecCC-CCHHHHHHHHhhchHHHHHHHHHHHHhhH
Q 013902 289 RAVESLKGDGQLSACEVNLIHYEEMG-IPKDVAKLAIRHGMWGGVKKLNSGMKAYQ 343 (434)
Q Consensus 289 rpv~s~~~dG~~~ac~Vty~~~~DpG-IP~wlvN~av~~g~~~~lkkL~~alrkY~ 343 (434)
+|+. +| .|+|+|+.|.||| +|---.|.+ |....+..--.+|.+|.
T Consensus 187 ~p~~----~~---~t~VtY~~~~dPg~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 232 (235)
T cd08873 187 RQDC----GT---CTEVSYYNETNPKLLSYVTCNLA---GLSALYCRTFHCCEQFL 232 (235)
T ss_pred EECC----CC---cEEEEEEEEcCCCccceeeecch---hhhHHHHHHHHHHHHHh
Confidence 9974 33 3999999999999 665555554 44455555556677664
No 18
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=99.97 E-value=2.2e-29 Score=244.30 Aligned_cols=180 Identities=17% Similarity=0.218 Sum_probs=152.4
Q ss_pred HHHHHhcCCCCCCcEEEEeccCCCcceEEEeecCCCCCeEEEEEEEEcCCCHHHHHHHhcCchhhhhhhhhcceeEEEEE
Q 013902 142 LLQLLERKDGEIEWQTLMEKSTPNMTYQAWRSEPETGPAVYRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEE 221 (434)
Q Consensus 142 l~~lle~~dg~~~We~v~dk~~~~~~ikVwrR~~esgl~~yRa~gv~edaspe~V~dll~D~e~R~~WD~~l~~~evLe~ 221 (434)
++++|...++ |++.++++ +|+||+++ ++....||+++++ ++++++++++|.|.++|++||+++.++++|++
T Consensus 51 ~l~~l~~~~~---W~l~~~~~----gI~Vyt~~-~s~~~~fK~e~~v-d~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~ 121 (240)
T cd08913 51 ALKMLVAKDN---WVLSSEKN----QVRLYTLE-EDKFLSFKVEMVV-HVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQ 121 (240)
T ss_pred HHHhhcccCC---CEEEEccC----CEEEEEEe-CCCccEEEEEEEE-cCCHHHHHHHHhChhhhhhhHhhccEEEEEEe
Confidence 4555666444 99999985 99999975 4556899999999 69999999999999999999999999999998
Q ss_pred ecCCCcEEEEEEEeecc--ccCCceeEEEEEEEe---cCCEEEEEEeccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCC
Q 013902 222 CPLTGTMIVQWIKKFPF--FCSDREYIIGRRIWE---AGKNYYCVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKG 296 (434)
Q Consensus 222 ~~~dg~~IVY~~~k~Pw--PvS~RDfV~~Rri~~---~~~~yvivskSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~ 296 (434)
++.+ + .+|++...|| |+++||||+.+++.. +++.|++..+++.||++|+++||||+++..++|+|.|..
T Consensus 122 id~~-~-~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~---- 195 (240)
T cd08913 122 VDED-D-AIYHVTSPSLSGHGKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEES---- 195 (240)
T ss_pred cCCC-c-EEEEEecCCCCCCCCCCeEEEEEEEEeccCCCccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECC----
Confidence 8743 3 4788888887 999999999877654 455788999999999999999999999999999999973
Q ss_pred CCCccceEEEEEEeecCC-CCHHHHHHHHhhchHH-HHHHHHHHHHhhH
Q 013902 297 DGQLSACEVNLIHYEEMG-IPKDVAKLAIRHGMWG-GVKKLNSGMKAYQ 343 (434)
Q Consensus 297 dG~~~ac~Vty~~~~DpG-IP~wlvN~av~~g~~~-~lkkL~~alrkY~ 343 (434)
+| .|+++|+.|.||| ||.|++|.++.++++. ++ ++|.+|.
T Consensus 196 ~~---~t~vtY~~~~dPG~LP~~~~N~~~~~~p~~~~~----~~~~~~~ 237 (240)
T cd08913 196 DQ---LTKVSYYNQATPGVLPYISTDIAGLSSEFYSTF----SACSQFL 237 (240)
T ss_pred CC---cEEEEEEEEeCCccccHHHhhhhhhccchhHHH----HHHHHHh
Confidence 33 3999999999999 9999999998887753 33 4555553
No 19
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=99.97 E-value=9e-29 Score=232.87 Aligned_cols=182 Identities=19% Similarity=0.207 Sum_probs=152.3
Q ss_pred HHHHHHHHhcCCCCCCcEEEEeccCCCcceEEEeecCC-C-CCeEEEEEEEEcCCCHHHHHHHhcCchhhhhhhhhccee
Q 013902 139 LEHLLQLLERKDGEIEWQTLMEKSTPNMTYQAWRSEPE-T-GPAVYRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYV 216 (434)
Q Consensus 139 f~~l~~lle~~dg~~~We~v~dk~~~~~~ikVwrR~~e-s-gl~~yRa~gv~edaspe~V~dll~D~e~R~~WD~~l~~~ 216 (434)
.++|++...+ ...+|++..+++ +|+||+|+.+ + +++.||++++++ ++++++++++.| .|++||+.+.++
T Consensus 7 ~~~ll~~~~~--~~~~W~~~~~~~----gi~I~~k~~~~~~~l~~~K~~~~v~-a~~~~v~~~l~d--~r~~Wd~~~~~~ 77 (197)
T cd08869 7 VQDLLREARD--KSKGWVSVSSSD----HVELAFKKVDDGHPLRLWRASTEVE-APPEEVLQRILR--ERHLWDDDLLQW 77 (197)
T ss_pred HHHHHHHHhh--ccCCceEEecCC----cEEEEEEeCCCCCcEEEEEEEEEeC-CCHHHHHHHHHH--HHhccchhhheE
Confidence 3445554443 345699999985 9999999764 3 689999999995 999999999876 489999999999
Q ss_pred EEEEEecCCCcEEEEEEEeeccccCCceeEEEEEEEe--cCCEEEEEEeccCCC-CCCCCCCCeEeeeeeEEEEEEEeec
Q 013902 217 KTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWE--AGKNYYCVTKGVPYP-ALPKRDKPRRVEHYFSSWVIRAVES 293 (434)
Q Consensus 217 evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri~~--~~~~yvivskSV~hp-~~P~~~g~VRve~~~sgwvIrpv~s 293 (434)
++|++++ ++++|+|++.+.|||+++||||+.|.+.. +++.|++..+|++|| .+|+ ||||+..+.+||.|+|++
T Consensus 78 ~vie~id-~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p~--g~VR~~~~~~g~~i~p~~- 153 (197)
T cd08869 78 KVVETLD-EDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVPL--GGVRAVVLASRYLIEPCG- 153 (197)
T ss_pred EEEEEec-CCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCCC--CCEEEEEEeeeEEEEECC-
Confidence 9999886 45789999999999999999999987653 456899999999995 6776 999999999999999984
Q ss_pred CCCCCCccceEEEEEEeecC-C-CCHHHHHHHHhhchHHHHHHHHHHHH
Q 013902 294 LKGDGQLSACEVNLIHYEEM-G-IPKDVAKLAIRHGMWGGVKKLNSGMK 340 (434)
Q Consensus 294 ~~~dG~~~ac~Vty~~~~Dp-G-IP~wlvN~av~~g~~~~lkkL~~alr 340 (434)
+| .|+|+|+.|.|| | ||+|++|..- +.++.-+++|+.-.+
T Consensus 154 ---~~---~t~vty~~~~Dp~G~iP~wl~N~~~-~~~~~~~~~l~~~~~ 195 (197)
T cd08869 154 ---SG---KSRVTHICRVDLRGRSPEWYNKVYG-HLCARELLRIRDSFR 195 (197)
T ss_pred ---CC---CeEEEEEEEECCCCCCCceeecchH-hHHHHHHHHHHhhcc
Confidence 23 399999999999 4 9999988876 667788888887553
No 20
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.97 E-value=2.9e-28 Score=226.62 Aligned_cols=179 Identities=23% Similarity=0.375 Sum_probs=152.1
Q ss_pred CCCcEEEEeccCCCcceEEEeecCC-C-CCeEEEEEEEEcCCCHHHHHHHhcCchhhhhhhhhcceeEEEEEecCCCcEE
Q 013902 152 EIEWQTLMEKSTPNMTYQAWRSEPE-T-GPAVYRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMI 229 (434)
Q Consensus 152 ~~~We~v~dk~~~~~~ikVwrR~~e-s-gl~~yRa~gv~edaspe~V~dll~D~e~R~~WD~~l~~~evLe~~~~dg~~I 229 (434)
+.+|++.+++++. .+..++..+. + ++..||+.++++ +++++++..++|... +||+++.++++|+.++ +++.|
T Consensus 18 ~~~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~k~~~~v~-~~~~~~~~~~~~~~~--~Wd~~~~~~~~le~~~-~~~~i 91 (206)
T PF01852_consen 18 EDGWKLYKDKKNG--DVYYKKVSPSDSCPIKMFKAEGVVP-ASPEQVVEDLLDDRE--QWDKMCVEAEVLEQID-EDTDI 91 (206)
T ss_dssp CTTCEEEEEETTT--CEEEEEEECSSSTSCEEEEEEEEES-SCHHHHHHHHHCGGG--HHSTTEEEEEEEEEEE-TTEEE
T ss_pred CCCCeEeEccCCC--eEEEEEeCccccccceEEEEEEEEc-CChHHHHHHHHhhHh--hcccchhhheeeeecC-CCCeE
Confidence 3359999966422 3333333333 3 789999999995 898877777776655 9999999999999887 56899
Q ss_pred EEEEEeecc--ccCCceeEEEEEEEe-cCCEEEEEEeccCCCCCCC-CCCCeEeeeeeEEEEEEEeecCCCCCCccceEE
Q 013902 230 VQWIKKFPF--FCSDREYIIGRRIWE-AGKNYYCVTKGVPYPALPK-RDKPRRVEHYFSSWVIRAVESLKGDGQLSACEV 305 (434)
Q Consensus 230 VY~~~k~Pw--PvS~RDfV~~Rri~~-~~~~yvivskSV~hp~~P~-~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~V 305 (434)
+|+..++|| |+++||||+.|++.. .++.++++.+|++||.+|+ ++|+||+..+.+||+|+|+++ | .|+|
T Consensus 92 ~~~~~~~~~~~p~~~RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~----~---~~~v 164 (206)
T PF01852_consen 92 VYFVMKSPWPGPVSPRDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGD----G---RTRV 164 (206)
T ss_dssp EEEEEE-CTTTTSSEEEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETT----C---EEEE
T ss_pred EEEEecccCCCCCCCcEEEEEEEEEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccC----C---CceE
Confidence 999999999 999999999999887 7889999999999999999 999999999999999999953 3 3999
Q ss_pred EEEEeecCC--CCHHHHHHHHhhchHHHHHHHHHHHHhhH
Q 013902 306 NLIHYEEMG--IPKDVAKLAIRHGMWGGVKKLNSGMKAYQ 343 (434)
Q Consensus 306 ty~~~~DpG--IP~wlvN~av~~g~~~~lkkL~~alrkY~ 343 (434)
+|+.|.||| ||+|++|.++.++++.+++++++++++|.
T Consensus 165 t~~~~~D~~G~iP~~~~n~~~~~~~~~~~~~~~~~~~~~~ 204 (206)
T PF01852_consen 165 TYVSQVDPKGWIPSWLVNMVVKSQPPNFLKNLRKALKKQK 204 (206)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEEEECCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 999999995 99999999999999999999999999874
No 21
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.96 E-value=3.6e-28 Score=220.85 Aligned_cols=183 Identities=27% Similarity=0.431 Sum_probs=159.5
Q ss_pred HHHHHHHhcCCCCCCcEEEEeccCCCcceEEEeecCC-CCCeEEEEEEEEcCCCHHHHHHHhcCchhhhhhhhhcceeEE
Q 013902 140 EHLLQLLERKDGEIEWQTLMEKSTPNMTYQAWRSEPE-TGPAVYRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKT 218 (434)
Q Consensus 140 ~~l~~lle~~dg~~~We~v~dk~~~~~~ikVwrR~~e-sgl~~yRa~gv~edaspe~V~dll~D~e~R~~WD~~l~~~ev 218 (434)
..++++.+.. .+|+.+.+++ ++++|+++.+ ++...||++++++ +|++++++++.|.+.|++||+.+.++++
T Consensus 5 ~~~~~~~~~~---~~W~~~~~~~----~v~vy~~~~~~~~~~~~k~~~~i~-~~~~~v~~~l~d~~~~~~w~~~~~~~~v 76 (193)
T cd00177 5 EELLELLEEP---EGWKLVKEKD----GVKIYTKPYEDSGLKLLKAEGVIP-ASPEQVFELLMDIDLRKKWDKNFEEFEV 76 (193)
T ss_pred HHHhhccccC---CCeEEEEECC----cEEEEEecCCCCCceeEEEEEEEC-CCHHHHHHHHhCCchhhchhhcceEEEE
Confidence 3444444333 4699999995 8999999765 6789999999996 7999999999999999999999999999
Q ss_pred EEEecCCCcEEEEEEEeeccccCCceeEEEEEEEecC-CEEEEEEeccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCC
Q 013902 219 LEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWEAG-KNYYCVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGD 297 (434)
Q Consensus 219 Le~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri~~~~-~~yvivskSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~d 297 (434)
|+..+ ++..++|+..+.|||+++||||+.+.....+ +.++++.+|++|+.+|+.+++||+..+.++|+|+|++ +
T Consensus 77 l~~~~-~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~----~ 151 (193)
T cd00177 77 IEEID-EHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLD----P 151 (193)
T ss_pred EEEeC-CCeEEEEEEeeCCCccCCccEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECC----C
Confidence 99875 4578999999999999999999998876655 8899999999999999999999999999999999983 2
Q ss_pred CCccceEEEEEEeecCC--CCHHHHHHHHhhchHHHHHHHHHH
Q 013902 298 GQLSACEVNLIHYEEMG--IPKDVAKLAIRHGMWGGVKKLNSG 338 (434)
Q Consensus 298 G~~~ac~Vty~~~~DpG--IP~wlvN~av~~g~~~~lkkL~~a 338 (434)
| .|+++|+.|.||| ||.|++|.++...+..+++.++..
T Consensus 152 ~---~~~vt~~~~~D~~g~iP~~~~~~~~~~~~~~~~~~~~~~ 191 (193)
T cd00177 152 G---KTKVTYVLQVDPKGSIPKSLVNSAAKKQLASFLKDLRKA 191 (193)
T ss_pred C---CEEEEEEEeeCCCCCccHHHHHhhhhhccHHHHHHHHHh
Confidence 2 3999999999995 999999999999888888766543
No 22
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.96 E-value=5.8e-28 Score=229.23 Aligned_cols=187 Identities=13% Similarity=0.161 Sum_probs=161.2
Q ss_pred HHHHHHHHhcCCCCCCcEEEEeccCCCcceEEEeecCC-CCCeEEEEEEEEcCCCHHHHHHHhcCchhhhhhhhhcceeE
Q 013902 139 LEHLLQLLERKDGEIEWQTLMEKSTPNMTYQAWRSEPE-TGPAVYRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVK 217 (434)
Q Consensus 139 f~~l~~lle~~dg~~~We~v~dk~~~~~~ikVwrR~~e-sgl~~yRa~gv~edaspe~V~dll~D~e~R~~WD~~l~~~e 217 (434)
++++++.+++ .++|++.++++ ++++|.|..+ ++...||++|+++ ++++.+++++.|.+.+++|++.+.+.+
T Consensus 11 ~~~~~~~l~~---~~~W~~~~~~~----~i~v~~r~~~~~~~~~~k~e~~i~-~~~~~~~~vl~d~~~~~~W~p~~~~~~ 82 (215)
T cd08877 11 MQENLKDLDE---SDGWTLQKESE----GIRVYYKFEPDGSLLSLRMEGEID-GPLFNLLALLNEVELYKTWVPFCIRSK 82 (215)
T ss_pred HHHHHhcccC---CCCcEEeccCC----CeEEEEEeCCCCCEEEEEEEEEec-CChhHeEEEEehhhhHhhhcccceeeE
Confidence 4445555544 45699999985 9999999655 5589999999995 899999999999999999999999999
Q ss_pred EEEEecCCCcEEEEEEEeeccccCCceeEEEEE-EE--ecCCEEEEEEeccCCCC---------CCCCC-CCeEeeeeeE
Q 013902 218 TLEECPLTGTMIVQWIKKFPFFCSDREYIIGRR-IW--EAGKNYYCVTKGVPYPA---------LPKRD-KPRRVEHYFS 284 (434)
Q Consensus 218 vLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rr-i~--~~~~~yvivskSV~hp~---------~P~~~-g~VRve~~~s 284 (434)
.|+..+ .++.++|+..++|||+++||+|+... .. ..++.+++..+|++|+. +|+.+ |+||++...+
T Consensus 83 ~l~~~~-~~~~v~y~~~~~PwPv~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~ 161 (215)
T cd08877 83 KVKQLG-RADKVCYLRVDLPWPLSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYY 161 (215)
T ss_pred EEeecC-CceEEEEEEEeCceEecceEEEEEEEEEeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecc
Confidence 998765 35789999999999999999997533 32 26778999999999875 79998 9999999999
Q ss_pred EEEEEEeecCCCCCCccceEEEEEEeecCC---CCHHHHHHHHhhchHHHHHHHHHHHHh
Q 013902 285 SWVIRAVESLKGDGQLSACEVNLIHYEEMG---IPKDVAKLAIRHGMWGGVKKLNSGMKA 341 (434)
Q Consensus 285 gwvIrpv~s~~~dG~~~ac~Vty~~~~DpG---IP~wlvN~av~~g~~~~lkkL~~alrk 341 (434)
+|.|+|++ +| .|.++|+.|.||| ||.|++|+++++.++.++.+|+++|++
T Consensus 162 ~~~i~p~~----~~---~t~v~~~~~~DP~g~~IP~~liN~~~k~~~~~~~~~l~k~~~~ 214 (215)
T cd08877 162 GFVITPIS----PT---KCYLRFVANVDPKMSLVPKSLLNFVARKFAGLLFEKIQKAAKN 214 (215)
T ss_pred eEEEEEcC----CC---CeEEEEEEEcCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999984 23 3999999999994 999999999999999999999999875
No 23
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.96 E-value=2e-27 Score=220.38 Aligned_cols=174 Identities=16% Similarity=0.280 Sum_probs=154.2
Q ss_pred CCcEEEEeccCCCcceEEEeecCC-CCCeEEEEEEEEcCCCHHHHHHHhcCchhhhhhhhhcceeEEEEEecCCCcEEEE
Q 013902 153 IEWQTLMEKSTPNMTYQAWRSEPE-TGPAVYRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQ 231 (434)
Q Consensus 153 ~~We~v~dk~~~~~~ikVwrR~~e-sgl~~yRa~gv~edaspe~V~dll~D~e~R~~WD~~l~~~evLe~~~~dg~~IVY 231 (434)
.+|+.+++++ ++++|+++.+ ++...||++++++ ++|+++++++.|.++|++||+.+.++++|+..+ +++.++|
T Consensus 17 ~~W~~~~~~~----~v~v~~~~~~~~~~~~~k~~~~i~-~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~-~~~~i~~ 90 (195)
T cd08876 17 GDWQLVKDKD----GIKVYTRDVEGSPLKEFKAVAEVD-ASIEAFLALLRDTESYPQWMPNCKESRVLKRTD-DNERSVY 90 (195)
T ss_pred CCCEEEecCC----CeEEEEEECCCCCeEEEEEEEEEe-CCHHHHHHHHhhhHhHHHHHhhcceEEEeecCC-CCcEEEE
Confidence 3599999985 8999999755 5679999999995 899999999999999999999999999999764 4578999
Q ss_pred EEEeeccccCCceeEEEEEEEec--CCEEEEEEeccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEEEE
Q 013902 232 WIKKFPFFCSDREYIIGRRIWEA--GKNYYCVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIH 309 (434)
Q Consensus 232 ~~~k~PwPvS~RDfV~~Rri~~~--~~~yvivskSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~~ 309 (434)
...++|||+++||||+.++...+ ++.+++...+++|+ +|++++|||+..+.++|.|+|++. + .|+|+|+.
T Consensus 91 ~~~~~p~pvs~Rdfv~~~~~~~~~~~~~~~i~~~s~~~~-~P~~~~~vR~~~~~~~~~i~~~~~----~---~t~vt~~~ 162 (195)
T cd08876 91 TVIDLPWPVKDRDMVLRSTTEQDADDGSVTITLEAAPEA-LPEQKGYVRIKTVEGQWTFTPLGN----G---KTRVTYQA 162 (195)
T ss_pred EEEecccccCCceEEEEEEEEEcCCCCEEEEEeecCCcc-CCCCCCeEEceeceeeEEEEECCC----C---eEEEEEEE
Confidence 99999999999999998776542 57788888899887 899999999999999999999852 2 39999999
Q ss_pred eecCC--CCHHHHHHHHhhchHHHHHHHHHHHH
Q 013902 310 YEEMG--IPKDVAKLAIRHGMWGGVKKLNSGMK 340 (434)
Q Consensus 310 ~~DpG--IP~wlvN~av~~g~~~~lkkL~~alr 340 (434)
+.||+ ||.|++|.++++.+++++.+|++.++
T Consensus 163 ~~dp~g~iP~~lv~~~~~~~~~~~l~~l~~~~~ 195 (195)
T cd08876 163 YADPGGSIPGWLANAFAKDAPYNTLENLRKQLK 195 (195)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99994 99999999999999999999988763
No 24
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=99.93 E-value=3.1e-24 Score=203.91 Aligned_cols=167 Identities=17% Similarity=0.205 Sum_probs=135.4
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEeccCCCcceEEEeec--CCCCCeEEEEEEEEcCCCHHHHHHHhcCchhhhhhhhhcce
Q 013902 138 DLEHLLQLLERKDGEIEWQTLMEKSTPNMTYQAWRSE--PETGPAVYRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAY 215 (434)
Q Consensus 138 Df~~l~~lle~~dg~~~We~v~dk~~~~~~ikVwrR~--~esgl~~yRa~gv~edaspe~V~dll~D~e~R~~WD~~l~~ 215 (434)
-+++|++...++- .+|..+...+ ++.+..++ ++++++.||++++++ ++|++++.++.|. |++||+.+.+
T Consensus 14 ~~~~l~~e~~~k~--k~w~~~~~~~----~~el~~~k~~~gs~l~~~r~~~~i~-a~~~~vl~~lld~--~~~Wd~~~~e 84 (204)
T cd08908 14 CVDGLFKEVKEKF--KGWVSYSTSE----QAELSYKKVSEGPPLRLWRTTIEVP-AAPEEILKRLLKE--QHLWDVDLLD 84 (204)
T ss_pred HHHHHHHHHHHHh--cCCcccCCCC----cEEEEEeccCCCCCcEEEEEEEEeC-CCHHHHHHHHHhh--HHHHHHHhhh
Confidence 3444444443332 2366664442 45554443 346689999999995 8999999999888 9999999999
Q ss_pred eEEEEEecCCCcEEEEEEEeeccccCCceeEEEEEEEe--cCCEEEEEEeccCCCCCCCCCCCeEeeeeeEEEEEEEeec
Q 013902 216 VKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWE--AGKNYYCVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVES 293 (434)
Q Consensus 216 ~evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri~~--~~~~yvivskSV~hp~~P~~~g~VRve~~~sgwvIrpv~s 293 (434)
.++|++.+ .+++|+|++.+.|||+++||||+.|.+.. .++.+++..+|+.|+.+|+. +||+..+.++|.|+|..
T Consensus 85 ~~vIe~ld-~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P~~--~VR~~~~~~~w~i~P~g- 160 (204)
T cd08908 85 SKVIEILD-SQTEIYQYVQNSMAPHPARDYVVLRTWRTNLPKGACALLATSVDHDRAPVA--GVRVNVLLSRYLIEPCG- 160 (204)
T ss_pred eEeeEecC-CCceEEEEEccCCCCCCCcEEEEEEEEEEeCCCCeEEEEEeecCcccCCcC--ceEEEEEeeEEEEEECC-
Confidence 99999877 45789999999999999999999988653 56778999999999999966 79999999999999983
Q ss_pred CCCCCCccceEEEEEEeecCC--CCHHHHHHH
Q 013902 294 LKGDGQLSACEVNLIHYEEMG--IPKDVAKLA 323 (434)
Q Consensus 294 ~~~dG~~~ac~Vty~~~~DpG--IP~wlvN~a 323 (434)
+| +|+|||+.|.||| ||.|++|.+
T Consensus 161 ---~g---~t~vtyi~~~DPgG~iP~W~~N~~ 186 (204)
T cd08908 161 ---SG---KSKLTYMCRIDLRGHMPEWYTKSF 186 (204)
T ss_pred ---CC---cEEEEEEEEeCCCCCCcHHHHhhH
Confidence 34 3999999999995 999999987
No 25
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=99.93 E-value=2.9e-24 Score=203.01 Aligned_cols=183 Identities=13% Similarity=0.169 Sum_probs=151.7
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEeccCCCcceEEEeecCC--CCCeEEEEEEEEcCCCHHHHHHHhcCchhhhhhhhhcc
Q 013902 137 NDLEHLLQLLERKDGEIEWQTLMEKSTPNMTYQAWRSEPE--TGPAVYRTRTVFEGATPELVRDFFWDDEFRRKWDHMLA 214 (434)
Q Consensus 137 eDf~~l~~lle~~dg~~~We~v~dk~~~~~~ikVwrR~~e--sgl~~yRa~gv~edaspe~V~dll~D~e~R~~WD~~l~ 214 (434)
+..+.|+...-++ ..+|....+++ +++||.++.+ ..+...|+..+|++.|++.+.+++.| |..||+++.
T Consensus 13 ~~~~~~lre~~ek--~kgW~~~~~~~----~vev~~kk~~d~~~l~lwk~s~ei~~~p~~vl~rvL~d---R~~WD~~m~ 83 (205)
T cd08907 13 DNVQCLLREASER--FKGWHSAPGPD----NTELACKKVGDGHPLRLWKVSTEVEAPPSVVLQRVLRE---RHLWDEDLL 83 (205)
T ss_pred HHHHHHHHHhhhc--cCCceeecCCC----CcEEEEEeCCCCCceEEEEEEEEecCCCHHHHHHHhhc---hhhhhHHHH
Confidence 3444454443333 33499998874 8899999765 44789999999999999999999999 999999999
Q ss_pred eeEEEEEecCCCcEEEEEEEeeccccCCceeEEEEEEEe--cCCEEEEEEeccCCCCCCCCCCCeEeeeeeEEEEEEEee
Q 013902 215 YVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWE--AGKNYYCVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVE 292 (434)
Q Consensus 215 ~~evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri~~--~~~~yvivskSV~hp~~P~~~g~VRve~~~sgwvIrpv~ 292 (434)
+.++|+.++ ++++|+||..++|.|+.+||||..|.++. ..+.|+|++.||.|+.+|+.+| ||+..+.+||.|+|..
T Consensus 84 e~~~Ie~Ld-~n~dI~yY~~~~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~~g-VRa~~l~sgYlIep~g 161 (205)
T cd08907 84 HSQVIEALE-NNTEVYHYVTDSMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLEAG-VRAVLLTSQYLIEPCG 161 (205)
T ss_pred hhhhheeec-CCCEEEEEEecCCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCCCCC-eEEEEEeccEEEEECC
Confidence 999999886 56899999999999999999999999752 2346999999999999999999 9999999999999973
Q ss_pred cCCCCCCccceEEEEEEeecC-C-CCHHHHHHHHhhchHHHHHHHHHH
Q 013902 293 SLKGDGQLSACEVNLIHYEEM-G-IPKDVAKLAIRHGMWGGVKKLNSG 338 (434)
Q Consensus 293 s~~~dG~~~ac~Vty~~~~Dp-G-IP~wlvN~av~~g~~~~lkkL~~a 338 (434)
.| +|++||+.+.|| | +|.|. |.+..+-+-.-+.+|+..
T Consensus 162 ----~g---~s~ltyi~rvD~rG~~P~Wy-nk~~g~~~a~~l~~ir~s 201 (205)
T cd08907 162 ----MG---RSRLTHICRADLRGRSPDWY-NKVFGHLCAMEVARIRDS 201 (205)
T ss_pred ----CC---CeEEEEEEEeCCCCCCcHHH-HHhHHHHHHHHHHHHHhh
Confidence 23 399999999999 7 99999 888776555556555543
No 26
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=99.92 E-value=2.2e-23 Score=198.21 Aligned_cols=154 Identities=16% Similarity=0.165 Sum_probs=129.1
Q ss_pred CcEEEEeccCCCcceEEEeec--CCCCCeEEEEEEEEcCCCHHHHHHHhcCchhhhhhhhhcceeEEEEEecCCCcEEEE
Q 013902 154 EWQTLMEKSTPNMTYQAWRSE--PETGPAVYRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQ 231 (434)
Q Consensus 154 ~We~v~dk~~~~~~ikVwrR~--~esgl~~yRa~gv~edaspe~V~dll~D~e~R~~WD~~l~~~evLe~~~~dg~~IVY 231 (434)
+|..+...+ ++.++.++ .+++++.+|+.+.++ ++|++|+..+.+ .|.+||..+.+.++|+.++ .+++|+|
T Consensus 28 ~w~~~~~~~----~~e~~ykK~~d~~~lk~~r~~~ei~-~~p~~VL~~vl~--~R~~WD~~~~~~~~ie~ld-~~tdi~~ 99 (205)
T cd08909 28 GWISCSSSD----NTELAYKKVGDGNPLRLWKVSVEVE-APPSVVLNRVLR--ERHLWDEDFLQWKVVETLD-KQTEVYQ 99 (205)
T ss_pred CCcccCCcC----CeEEEEecCCCCCceEEEEEEEEeC-CCHHHHHHHHHh--hHhhHHhhcceeEEEEEeC-CCcEEEE
Confidence 366654442 44444432 347789999999996 788888887765 6999999999999999886 3489999
Q ss_pred EEEeeccccCCceeEEEEEEEe--cCCEEEEEEeccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEEEE
Q 013902 232 WIKKFPFFCSDREYIIGRRIWE--AGKNYYCVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIH 309 (434)
Q Consensus 232 ~~~k~PwPvS~RDfV~~Rri~~--~~~~yvivskSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~~ 309 (434)
+..+.|+|+++||||+.|++.. .+++|+++++|++|+++|+. |+||+..+.+||.|+|.+ +| +|+|+|+.
T Consensus 100 y~~~~~~P~~~RD~v~~R~w~~~~~~G~~vi~~~Sv~H~~~p~~-g~VRa~~~~~gylI~P~~----~g---~trvt~i~ 171 (205)
T cd08909 100 YVLNCMAPHPSRDFVVLRSWRTDLPKGACSLVSVSVEHEEAPLL-GGVRAVVLDSQYLIEPCG----SG---KSRLTHIC 171 (205)
T ss_pred EEeecCCCCCCCEEEEEEEEEEeCCCCcEEEEEecCCCCcCCCC-CcEEEEEEcCcEEEEECC----CC---CEEEEEEE
Confidence 9999999999999999999863 35679999999999999985 999999999999999984 34 39999999
Q ss_pred eecC-C-CCHHHHHHH
Q 013902 310 YEEM-G-IPKDVAKLA 323 (434)
Q Consensus 310 ~~Dp-G-IP~wlvN~a 323 (434)
+.|| | +|.|++|..
T Consensus 172 ~vDpkG~~P~W~~n~~ 187 (205)
T cd08909 172 RVDLKGHSPEWYNKGF 187 (205)
T ss_pred EecCCCCChHHHHHhH
Confidence 9999 5 999999986
No 27
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=99.91 E-value=1.5e-23 Score=225.95 Aligned_cols=198 Identities=16% Similarity=0.215 Sum_probs=161.6
Q ss_pred CCCcEEEEeccCCCcceEEEeecCC------CCCeEEEEEEEEcCCCHHHHHHHhcCch-hhhhhhhhcceeEEEEEecC
Q 013902 152 EIEWQTLMEKSTPNMTYQAWRSEPE------TGPAVYRTRTVFEGATPELVRDFFWDDE-FRRKWDHMLAYVKTLEECPL 224 (434)
Q Consensus 152 ~~~We~v~dk~~~~~~ikVwrR~~e------sgl~~yRa~gv~edaspe~V~dll~D~e-~R~~WD~~l~~~evLe~~~~ 224 (434)
...|+.+.-.+ |.+++..-.+ .-.+.+|++|+++ ++||+|++++++.+ .|.+||..+.++++||+++
T Consensus 197 ~~~Wr~~~c~N----GlRiF~e~~~~~~~~~~~~~~mKavGVV~-aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID- 270 (719)
T PLN00188 197 RKHWRLLQCQN----GLRIFEELLEVDYLPRSCSRAMKAVGVVE-ATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEVD- 270 (719)
T ss_pred cCCeEEEEeec----cceeehhhhccccccccCCceeEEEEEec-CCHHHHHHHHhccCcccccchhcccceEEEEEec-
Confidence 55799998884 8888875322 1258899999995 99999999998755 9999999999999999986
Q ss_pred CCcEEEEEEEe---eccccCCceeEEEEEEEe-cCCEEEEEEeccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCCc
Q 013902 225 TGTMIVQWIKK---FPFFCSDREYIIGRRIWE-AGKNYYCVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQL 300 (434)
Q Consensus 225 dg~~IVY~~~k---~PwPvS~RDfV~~Rri~~-~~~~yvivskSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~ 300 (434)
.+++|+|.+.+ +|+.+++||||+.|++.+ ++++|+|+.+|+.||.+|+++||||++++.|||.|.|++.+ +| .
T Consensus 271 ~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDGsYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~~~--~g-~ 347 (719)
T PLN00188 271 GHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGFVRAHLESGGFNISPLKPR--NG-R 347 (719)
T ss_pred CCeEEEEEEeccccccCccCcceeEEEEEEEEcCCCcEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECCCC--CC-C
Confidence 46799998888 455899999999999876 56789999999999999999999999999999999999765 34 3
Q ss_pred cceEEEEEEeecC-C-CCHHHHHHHHhhchHHHHHHHHHHHHhhHhhhcCCCCCChhhhhhh
Q 013902 301 SACEVNLIHYEEM-G-IPKDVAKLAIRHGMWGGVKKLNSGMKAYQNARKSDSSSPGRALMAS 360 (434)
Q Consensus 301 ~ac~Vty~~~~Dp-G-IP~wlvN~av~~g~~~~lkkL~~alrkY~~~R~~~~~~s~~~~m~~ 360 (434)
+.|.|+++.|+|+ | +|.+.-+.. ++-+. -|-+-.+++|+|..++....+..|.+.|.+
T Consensus 348 ~r~lv~~~lqtDlkGW~~~y~~s~~-~~~~l-~mL~~VAgLrE~~~~~~~~~~~~~~~~~~~ 407 (719)
T PLN00188 348 PRTQVQHLMQIDLKGWGVGYIPSFQ-QHCLL-QMLNSVAGLREWFSQTDERGAPPRIPVMVN 407 (719)
T ss_pred CceEEEEEEEEccCccccccCcccc-ccchH-HHHHHHHHHHHHHhcCcccCccccceeecc
Confidence 6799999999999 6 888865332 33333 344556789999888887777777666644
No 28
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=99.62 E-value=3.4e-14 Score=135.67 Aligned_cols=159 Identities=19% Similarity=0.223 Sum_probs=112.2
Q ss_pred cceEEEeecCC-CCCeEEEEEEEEcCCC------HHHHHHHhcC--chhhhhhhhhcc--eeEEEEEecCCCc----EEE
Q 013902 166 MTYQAWRSEPE-TGPAVYRTRTVFEGAT------PELVRDFFWD--DEFRRKWDHMLA--YVKTLEECPLTGT----MIV 230 (434)
Q Consensus 166 ~~ikVwrR~~e-sgl~~yRa~gv~edas------pe~V~dll~D--~e~R~~WD~~l~--~~evLe~~~~dg~----~IV 230 (434)
.+|++|++... .+..=|.=+.+.++.. .+++.+.|.+ .++.++|.+.+. ++++|+..+ ++. .++
T Consensus 16 ~~v~~y~~~~~~~~~~W~~R~S~H~~~~~~~~~~~~~~~~~l~~~h~~~E~~~i~~v~~~~~~~l~~~~-~~~~~~~~v~ 94 (208)
T cd08864 16 IGVQTYSKHIAVKGDFWFARVSVHEDLGFTGKKSYQEFREGLRDTHTEYEKEYVHEIGAYDLEPVEVDG-EGDGVVTYLV 94 (208)
T ss_pred ceeEEEecccCCCCceeEEEEeecCCCCchhhhHHHHHHhhhhHhHHhhhhhchhhhccceeEEeeecC-CCccceEEEE
Confidence 57899988643 2222121122222222 3344444433 667788999999 899998765 445 789
Q ss_pred EEEEeeccccCCceeEEEEE-EEecC--CEEEEEEeccCCCCCC-CCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEE
Q 013902 231 QWIKKFPFFCSDREYIIGRR-IWEAG--KNYYCVTKGVPYPALP-KRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVN 306 (434)
Q Consensus 231 Y~~~k~PwPvS~RDfV~~Rr-i~~~~--~~yvivskSV~hp~~P-~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vt 306 (434)
|...++|||+++||||.... ....+ +.+++++.++.|+.+| +.++|||+. |.++..|+.++... ++ .+.++.+
T Consensus 95 ~~~~~~P~Pl~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~~~~~Vr~~-y~SgE~~~~~p~~~-~~-~~~vew~ 171 (208)
T cd08864 95 QLTYKFPFPLSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVESLYENAVLGR-YASVEKISYLPDAD-GK-SNKVEWI 171 (208)
T ss_pred EEEEECCCCCCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCCccCCCcEEEE-EEEEEEEEEcCccC-CC-cCCEEEE
Confidence 99999999999999999877 45545 7889999999999999 899999999 77776666554310 12 1236666
Q ss_pred EEEeecCC--CCHHHHHHHHhhch
Q 013902 307 LIHYEEMG--IPKDVAKLAIRHGM 328 (434)
Q Consensus 307 y~~~~DpG--IP~wlvN~av~~g~ 328 (434)
|..+.||| ||+|++|.++..++
T Consensus 172 maT~sDpGG~IP~wl~n~~~p~aI 195 (208)
T cd08864 172 MATRSDAGGNIPRWLTKLTIPKAI 195 (208)
T ss_pred EEEeeCCCCcCcHHHHhccCchHH
Confidence 66699996 99999999876544
No 29
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=99.54 E-value=4.2e-14 Score=146.31 Aligned_cols=194 Identities=18% Similarity=0.326 Sum_probs=159.0
Q ss_pred CCCCcEEEEeccCCCcceEEEeecCC-CC--CeEEEEEEEEcCCCHHHHHHHhcCchhhhhhhhhcceeEEEEEecCCCc
Q 013902 151 GEIEWQTLMEKSTPNMTYQAWRSEPE-TG--PAVYRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGT 227 (434)
Q Consensus 151 g~~~We~v~dk~~~~~~ikVwrR~~e-sg--l~~yRa~gv~edaspe~V~dll~D~e~R~~WD~~l~~~evLe~~~~dg~ 227 (434)
+...|+++.++. ..++|+|..+ +| .-..|+...+.++++.++...|+|.++|.+|+.+++.+.++|.+. ++.
T Consensus 401 ~d~nwqlFaeeg----emkmy~re~eeng~~~Dplka~hav~gvta~e~chyf~~~~~rndwettle~~~vve~is-~d~ 475 (611)
T KOG1739|consen 401 GDANWQLFAEEG----EMKMYRREVEENGIVLDPLKATHAVKGVTAHEVCHYFWNVDVRNDWETTLENFHVVETIS-DDA 475 (611)
T ss_pred ccchhhhhcccC----CccccceeeccCCcccCccccchhhcchhHHHHHHHHcChhhhcchhhhhhhceeeeeec-CCe
Confidence 344599999995 7899999766 44 345788888888999999999999999999999999999999886 456
Q ss_pred EEEEEEEeeccccCCceeEEE---EEEE---ec-CCEEEEEEeccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCC-
Q 013902 228 MIVQWIKKFPFFCSDREYIIG---RRIW---EA-GKNYYCVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQ- 299 (434)
Q Consensus 228 ~IVY~~~k~PwPvS~RDfV~~---Rri~---~~-~~~yvivskSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~- 299 (434)
-|+|...|--||.|+||-.+. |++- ++ .+.|++++.+++|.+.|-.+..||+....+..|-.-++...+|.+
T Consensus 476 ~~~~qthkrvwpasqrd~lf~shirki~~~~e~gad~wivcn~s~~~a~~pl~n~cvr~~ltv~micqt~v~~p~~~q~l 555 (611)
T KOG1739|consen 476 IIIYQTHKRVWPASQRDVLFLSHIRKIPALTENGADTWIVCNFSVDHASAPLNNRCVRAKLTVAMICQTLVSPPEGNQEL 555 (611)
T ss_pred EEEEecccccCCCCcchhHHHHHHhhcccccCCCCceEEEecCccccccCccCCceEEEeeeeeeeeecccCCcccCCcc
Confidence 788888899999999998873 5543 22 367889999999999999999999998887776655543211111
Q ss_pred ---ccceEEEEEEeecCC--CCHHHHHHHHhhchHHHHHHHHHHHHhhHhhhcCCCCCC
Q 013902 300 ---LSACEVNLIHYEEMG--IPKDVAKLAIRHGMWGGVKKLNSGMKAYQNARKSDSSSP 353 (434)
Q Consensus 300 ---~~ac~Vty~~~~DpG--IP~wlvN~av~~g~~~~lkkL~~alrkY~~~R~~~~~~s 353 (434)
...|+++|..+.+|| .|......+.++-.|.|++. ...|.....++.|++
T Consensus 556 ~rdd~~ckityvs~vnpggwapasalravykreypkflkr----ft~yv~~~~kgkpi~ 610 (611)
T KOG1739|consen 556 SRDDILCKITYVSNVNPGGWAPASALRAVYKREYPKFLKR----FTSYVQEKTKGKPIL 610 (611)
T ss_pred cccceeEEEEEEeeeCCCCcccHHHHHHHHHhhhHHHHHH----HHHHHHHhcCCCCCc
Confidence 246999999999996 99999999999999999965 667888888888764
No 30
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=99.27 E-value=2.2e-10 Score=110.88 Aligned_cols=194 Identities=15% Similarity=0.132 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEeccC---CCcceE-EEeecCC-----CCCeEEEEEEEEcCCCHHHHHHHhcCchhh
Q 013902 136 ENDLEHLLQLLERKDGEIEWQTLMEKST---PNMTYQ-AWRSEPE-----TGPAVYRTRTVFEGATPELVRDFFWDDEFR 206 (434)
Q Consensus 136 deDf~~l~~lle~~dg~~~We~v~dk~~---~~~~ik-VwrR~~e-----sgl~~yRa~gv~edaspe~V~dll~D~e~R 206 (434)
++.+++|+.+.... .+.|....+.+. +-.+|. ++.+... ...-.-|..|.+ ..++..+.++|+|.+..
T Consensus 9 ~~am~Ell~~a~~~--~plWi~~~~~~~~~l~~dey~~~f~~~~~~~~~~~~~eASR~~glV-~m~~~~lVe~lmD~~kW 85 (229)
T cd08875 9 EEAMDELLKLAQGG--EPLWIKSPGMKPEILNPDEYERMFPRHGGSKPGGFTTEASRACGLV-MMNAIKLVEILMDVNKW 85 (229)
T ss_pred HHHHHHHHHHhccC--CCCceecCCCCccccCHHHHhhcccCcCCCCCCCCeEEEEeeeEEE-ecCHHHHHHHHhChhhh
Confidence 45677777766554 356987665421 111222 2222111 113468889999 59999999999998755
Q ss_pred hh-hhhhcceeEEEEEecCC------Cc-EEEEEEEeeccc-cCCceeEEEEEEEe-cCCEEEEEEeccCCC-CCCCCCC
Q 013902 207 RK-WDHMLAYVKTLEECPLT------GT-MIVQWIKKFPFF-CSDREYIIGRRIWE-AGKNYYCVTKGVPYP-ALPKRDK 275 (434)
Q Consensus 207 ~~-WD~~l~~~evLe~~~~d------g~-~IVY~~~k~PwP-vS~RDfV~~Rri~~-~~~~yvivskSV~hp-~~P~~~g 275 (434)
.+ .+..+...++++.++.. |. +++|.+.+.|-| +..|||.+.|+..+ .++.++++.+|+++. ..|..++
T Consensus 86 ~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~~~p~~~~ 165 (229)
T cd08875 86 SELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQTAPPPAS 165 (229)
T ss_pred hhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeecccccCCCCCC
Confidence 55 55588899999988742 22 689999998885 58999999999764 678899999999987 6788899
Q ss_pred CeEeeeeeEEEEEEEeecCCCCCCccceEEEEEEeecC----C--CCHHHHHHHHhhchHHHHHHHHHHH
Q 013902 276 PRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEM----G--IPKDVAKLAIRHGMWGGVKKLNSGM 339 (434)
Q Consensus 276 ~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~~~~Dp----G--IP~wlvN~av~~g~~~~lkkL~~al 339 (434)
++|.+..+|||.|++.+ || .|+|+++-|.|. . +|..+++.++..|.-..+..|...|
T Consensus 166 ~~r~~~~PSGcLIq~~~----nG---~SkVtwVeH~e~d~~~~~~l~~~l~~sg~AfgA~rw~a~lqRqc 228 (229)
T cd08875 166 FVRCRRLPSGCLIQDMP----NG---YSKVTWVEHVEVDEKPVHLLYRYLVSSGLAFGATRWVATLQRQC 228 (229)
T ss_pred ccEEEEecCcEEEEECC----CC---ceEEEEEEEEeccCCcccccchhhhhhhHHHHHHHHHHHHHHhc
Confidence 99999999999999995 45 499999999995 2 9999999999988888887766654
No 31
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.19 E-value=4.1e-10 Score=98.51 Aligned_cols=134 Identities=13% Similarity=0.093 Sum_probs=103.1
Q ss_pred EEEEEEcCCCHHHHHHHhcCchhhhhhhhhcceeEEEEEecCCCcEEEEEEEeeccccCCceeEEEEEEEecCCEEEEEE
Q 013902 183 RTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWEAGKNYYCVT 262 (434)
Q Consensus 183 Ra~gv~edaspe~V~dll~D~e~R~~WD~~l~~~evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri~~~~~~yvivs 262 (434)
+.+..+ ++|++++++++.|.+..++|.+.+.++++++... +...+++..++| ..+|+|+...++.. ++.+ ..
T Consensus 2 ~~s~~i-~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~i--~~ 73 (138)
T cd07813 2 SKSRLV-PYSAEQMFDLVADVERYPEFLPWCTASRVLERDE--DELEAELTVGFG--GIRESFTSRVTLVP-PESI--EA 73 (138)
T ss_pred eEEEEc-CCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCC--CEEEEEEEEeec--cccEEEEEEEEecC-CCEE--EE
Confidence 345677 5999999999999999999999999999998533 335566655555 46899987655433 4432 33
Q ss_pred eccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEEEEeecCC--CCHHHHHHHHhhchHHHHHHHHHHHH
Q 013902 263 KGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMG--IPKDVAKLAIRHGMWGGVKKLNSGMK 340 (434)
Q Consensus 263 kSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~~~~DpG--IP~wlvN~av~~g~~~~lkkL~~alr 340 (434)
.+++. ++..+.+.|.++|+++ | .|+|+|..+.+|+ ||.+++|.++.+.+...++.+++.|+
T Consensus 74 ~~~~g----------~~~~~~g~w~~~p~~~----~---~T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~f~~~~~ 136 (138)
T cd07813 74 ELVDG----------PFKHLEGEWRFKPLGE----N---ACKVEFDLEFEFKSRLLEALAGLVFDEVAKKMVDAFEKRAK 136 (138)
T ss_pred EecCC----------ChhhceeEEEEEECCC----C---CEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33332 4566789999999852 3 3999999999996 99999999999988888888888776
Q ss_pred h
Q 013902 341 A 341 (434)
Q Consensus 341 k 341 (434)
+
T Consensus 137 ~ 137 (138)
T cd07813 137 Q 137 (138)
T ss_pred h
Confidence 4
No 32
>PF11274 DUF3074: Protein of unknown function (DUF3074)
Probab=99.08 E-value=8.2e-09 Score=97.11 Aligned_cols=137 Identities=23% Similarity=0.230 Sum_probs=107.1
Q ss_pred CCCHHHHHHHhcC--chhhhhhhhhcceeEEEEEec--------CCCc-EEEEEEEeeccccCCceeEEEEEEEec----
Q 013902 190 GATPELVRDFFWD--DEFRRKWDHMLAYVKTLEECP--------LTGT-MIVQWIKKFPFFCSDREYIIGRRIWEA---- 254 (434)
Q Consensus 190 daspe~V~dll~D--~e~R~~WD~~l~~~evLe~~~--------~dg~-~IVY~~~k~PwPvS~RDfV~~Rri~~~---- 254 (434)
+++-+++.+.|.+ .++-++..+.+...+.++..+ .+++ .++....+||+|+++|||+........
T Consensus 13 ~~~~~~~~~~L~~~h~e~E~~yi~~i~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~kfp~pl~~R~F~~Lvit~~~~~~~ 92 (184)
T PF11274_consen 13 GASFDEFRKGLKDEHSENEKEYIPGIGSVERLERWDVDDGGGGWGDGTMEVWQLSYKFPGPLSPRVFVVLVITADLPSKT 92 (184)
T ss_pred CCCHHHHHHHHHhhhHHHHHHhccccceEEEEEEeccccCCcccccceEEEEEEEeECCCCCCCcEEEEEEEEeccCccc
Confidence 5888999998865 677777888899999988762 1334 455567789999999999986654432
Q ss_pred ------CCEEEEEEeccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEEEEeecCC--CCHHHHHHHHhh
Q 013902 255 ------GKNYYCVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMG--IPKDVAKLAIRH 326 (434)
Q Consensus 255 ------~~~yvivskSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~~~~DpG--IP~wlvN~av~~ 326 (434)
.+.+++++..+.|+..|+.+++||+. |.|-=.||.++....+......+-+|....|+| ||.|+.++++..
T Consensus 93 ~~~~~~~~~f~vVs~P~~~~~~~~~~~~V~g~-Y~SVE~ire~p~~~~~~~~~~veW~MaT~SdaGG~IP~w~q~~~~p~ 171 (184)
T PF11274_consen 93 EDDSTGPREFMVVSIPVDHPDSPPRKGYVRGQ-YESVERIRELPDTKDDDEEGPVEWIMATRSDAGGSIPRWMQEMGTPG 171 (184)
T ss_pred cCCCCCCCeEEEEEEEcCCcccCCCCCCEEEE-EEEEEEEEEccCCCCCCCCCcEEEEEEEeeCCCCcccHHHHhccCcH
Confidence 47899999999999999999999986 888888999853321112245899999999996 999999997554
Q ss_pred c
Q 013902 327 G 327 (434)
Q Consensus 327 g 327 (434)
+
T Consensus 172 ~ 172 (184)
T PF11274_consen 172 A 172 (184)
T ss_pred H
Confidence 3
No 33
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.04 E-value=2e-08 Score=87.84 Aligned_cols=132 Identities=14% Similarity=0.145 Sum_probs=90.4
Q ss_pred EEEEEEcCCCHHHHHHHhcCchhhhhhhhhcceeEEEEEecCCCcEEEEEEEeeccc-cCCceeEEEEEEEecCCEEEEE
Q 013902 183 RTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFF-CSDREYIIGRRIWEAGKNYYCV 261 (434)
Q Consensus 183 Ra~gv~edaspe~V~dll~D~e~R~~WD~~l~~~evLe~~~~dg~~IVY~~~k~PwP-vS~RDfV~~Rri~~~~~~yviv 261 (434)
+++..+ ++||++|++++.|.+.+++|++.+.++++|+.. ++...+|+....... .+-+.-| ..++...+
T Consensus 2 ~~~~~i-~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~------ 71 (144)
T cd08866 2 VARVRV-PAPPETVWAVLTDYDNLAEFIPNLAESRLLERN--GNRVVLEQTGKQGILFFKFEARV-VLELRERE------ 71 (144)
T ss_pred eEEEEE-CCCHHHHHHHHhChhhHHhhCcCceEEEEEEcC--CCEEEEEEeeeEEEEeeeeeEEE-EEEEEEec------
Confidence 467788 599999999999999999999999999999742 222344443222111 0000001 01111100
Q ss_pred EeccCCCCCCCCCCCeEe-------eeeeEEEEEEEeecCCCCCCccceEEEEEEeecCC--CCHHHHHHHHhhchHHHH
Q 013902 262 TKGVPYPALPKRDKPRRV-------EHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMG--IPKDVAKLAIRHGMWGGV 332 (434)
Q Consensus 262 skSV~hp~~P~~~g~VRv-------e~~~sgwvIrpv~s~~~dG~~~ac~Vty~~~~DpG--IP~wlvN~av~~g~~~~l 332 (434)
..++.+|. ..+.+.|.++|..+ + | .|+|+|..+.+|+ +|.+++|.++...+...+
T Consensus 72 ----------~~~~~i~~~~~~g~~~~~~g~w~~~~~~~--~-~---~t~v~~~~~~~~~~~~p~~l~~~~~~~~~~~~l 135 (144)
T cd08866 72 ----------EFPRELDFEMVEGDFKRFEGSWRLEPLAD--G-G---GTLLTYEVEVKPDFFAPVFLVEFVLRQDLPTNL 135 (144)
T ss_pred ----------CCCceEEEEEcCCchhceEEEEEEEECCC--C-C---eEEEEEEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 01122333 56789999999852 1 2 3999999999995 999999999999999999
Q ss_pred HHHHHHHH
Q 013902 333 KKLNSGMK 340 (434)
Q Consensus 333 kkL~~alr 340 (434)
+.|++.+.
T Consensus 136 ~~lr~~ae 143 (144)
T cd08866 136 LAIRAEAE 143 (144)
T ss_pred HHHHHHHh
Confidence 99988775
No 34
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.91 E-value=8.4e-08 Score=82.67 Aligned_cols=133 Identities=17% Similarity=0.070 Sum_probs=91.8
Q ss_pred EEEEEEEcCCCHHHHHHHhcCchhhhhhhhhcceeEEEEEecCCCc-EEEEEEEeeccccCCceeEEEEEEEecCCEEEE
Q 013902 182 YRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGT-MIVQWIKKFPFFCSDREYIIGRRIWEAGKNYYC 260 (434)
Q Consensus 182 yRa~gv~edaspe~V~dll~D~e~R~~WD~~l~~~evLe~~~~dg~-~IVY~~~k~PwPvS~RDfV~~Rri~~~~~~yvi 260 (434)
+.....+ ++||++|++++.|.+..++|.+.+.++++++..+ .+. ...+.....+ +++. +|+....... +.. +
T Consensus 4 v~~s~~i-~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~-~~~--i 76 (140)
T cd07819 4 VSREFEI-EAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDN-DGRPEMVRIGVGAY-GIKD-TYALEYTWDG-AGS--V 76 (140)
T ss_pred EEEEEEE-eCCHHHHHHHHhChhhhhhhCcceEEEEEeccCC-CCCEEEEEEEEeee-eEEE-EEEEEEEEcC-CCc--E
Confidence 4556678 6999999999999999999999999998886422 233 2344333333 3433 5553332212 222 2
Q ss_pred EEeccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEEEEeecCC--CCHHHHHHHHhhchHHHHHHHHHH
Q 013902 261 VTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMG--IPKDVAKLAIRHGMWGGVKKLNSG 338 (434)
Q Consensus 261 vskSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~~~~DpG--IP~wlvN~av~~g~~~~lkkL~~a 338 (434)
..+.... .+...+.+.|.+.|.. +| |+|+|..+.+++ ||.++++.+.+.....++++|++.
T Consensus 77 ~~~~~~~---------~~~~~~~~~~~~~~~~----~~----t~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (140)
T cd07819 77 SWTLVEG---------EGNRSQEGSYTLTPKG----DG----TRVTFDLTVELTVPLPGFLKRKAEPLVLDEALKGLKKR 139 (140)
T ss_pred EEEEecc---------cceeEEEEEEEEEECC----CC----EEEEEEEEEEecCCCCHHHHHHhhhHHHHHHHHhHhhh
Confidence 2233221 1455667889999973 24 999999999995 999999999998888888877654
No 35
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.76 E-value=4.3e-07 Score=78.63 Aligned_cols=135 Identities=11% Similarity=-0.028 Sum_probs=94.3
Q ss_pred EEEEEEEEcCCCHHHHHHHhcCchhhhhhhhhcceeEEEEEecCCCcEEEEEEEeeccccCCceeEEEEEEEe-cC-CEE
Q 013902 181 VYRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWE-AG-KNY 258 (434)
Q Consensus 181 ~yRa~gv~edaspe~V~dll~D~e~R~~WD~~l~~~evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri~~-~~-~~y 258 (434)
+++.+..+ ++||++|++++.|.+...+|.+.+.+++.++ ++...++...+. +|++.|. ...-++.+ +. +.+
T Consensus 2 ~~~~~~~i-~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~ 74 (144)
T cd05018 2 KISGEFRI-PAPPEEVWAALNDPEVLARCIPGCESLEKIG----PNEYEATVKLKV-GPVKGTF-KGKVELSDLDPPESY 74 (144)
T ss_pred eeeeEEEe-cCCHHHHHHHhcCHHHHHhhccchhhccccC----CCeEEEEEEEEE-ccEEEEE-EEEEEEEecCCCcEE
Confidence 46778889 5999999999999999999999888766653 344445545454 3455443 33333332 32 333
Q ss_pred EEEEeccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEEEEeecCC-----CCHHHHHHHHhhchHHHHH
Q 013902 259 YCVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMG-----IPKDVAKLAIRHGMWGGVK 333 (434)
Q Consensus 259 vivskSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~~~~DpG-----IP~wlvN~av~~g~~~~lk 333 (434)
.+...+.. + .+...+...|.+.|.+ +| |+|+|..+.+++ +|.+++|.++++.+..|++
T Consensus 75 ~~~~~~~~-~--------~~~~~~~~~~~l~~~~----~g----T~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~ 137 (144)
T cd05018 75 TITGEGKG-G--------AGFVKGTARVTLEPDG----GG----TRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFE 137 (144)
T ss_pred EEEEEEcC-C--------CceEEEEEEEEEEecC----Cc----EEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHH
Confidence 33332211 1 3334678999999962 23 999999999984 5999999999999999999
Q ss_pred HHHHHH
Q 013902 334 KLNSGM 339 (434)
Q Consensus 334 kL~~al 339 (434)
+|++.+
T Consensus 138 ~l~~~~ 143 (144)
T cd05018 138 NLASKI 143 (144)
T ss_pred HHHHhh
Confidence 988764
No 36
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=98.33 E-value=5.4e-05 Score=65.07 Aligned_cols=127 Identities=17% Similarity=0.167 Sum_probs=88.1
Q ss_pred CCCHHHHHHHhcCchhhhhhhhhcceeEEEEEecCCCcEEEEEEEeeccccCCceeEEEEEEEecCCEEEEEEeccCCCC
Q 013902 190 GATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWEAGKNYYCVTKGVPYPA 269 (434)
Q Consensus 190 daspe~V~dll~D~e~R~~WD~~l~~~evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri~~~~~~yvivskSV~hp~ 269 (434)
++|+++|++++.|.+..++|.+.+.++++|+... + ...+++. ..+....+.|.........+. +..+.+.
T Consensus 2 ~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~-~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--- 71 (130)
T PF03364_consen 2 NAPPEEVWSVITDYENYPRFFPPVKEVRVLERDG-D-GMRARWE--VKFGGIKRSWTSRVTEDPPER---IRFEQIS--- 71 (130)
T ss_dssp SS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEEC-C-EEEEEEE--ECTTTTCEEEEEEEEEECTTT---EEEESSE---
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCC-C-eEEEEEE--EecCCEEEEEEEEEEEEEeee---eeeeecC---
Confidence 5999999999999999999999999999998643 2 3333333 344334566654333333333 2222222
Q ss_pred CCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEEEEeecCC--CCHHHHHHHHhhchHHHHHHHH
Q 013902 270 LPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMG--IPKDVAKLAIRHGMWGGVKKLN 336 (434)
Q Consensus 270 ~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~~~~DpG--IP~wlvN~av~~g~~~~lkkL~ 336 (434)
|. ...+.+.|.++|..+. .+| +.|.+++.+..+|+ +|..+++.++.+.....+++|+
T Consensus 72 -----g~--~~~~~g~W~~~~~~~~-~~g--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (130)
T PF03364_consen 72 -----GP--FKSFEGSWRFEPLGGN-EGG--TRTRVTYDYEVDPPGPLPGFLARQFFRRDLRQMLEAFR 130 (130)
T ss_dssp -----TT--EEEEEEEEEEEEETTE-CCE--EEEEEEEEEEEETSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CC--chhcEEEEEEEECCCC-cCC--CEEEEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHhhC
Confidence 11 4678899999998641 113 46999999999995 9999999999988877777664
No 37
>PRK10724 hypothetical protein; Provisional
Probab=98.19 E-value=6.4e-05 Score=69.10 Aligned_cols=138 Identities=10% Similarity=0.076 Sum_probs=94.9
Q ss_pred CeEEEEEEEEcCCCHHHHHHHhcCchhhhhhhhhcceeEEEEEecCCCcEEEEEEEeeccccCCceeEEEEEEEecCCEE
Q 013902 179 PAVYRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWEAGKNY 258 (434)
Q Consensus 179 l~~yRa~gv~edaspe~V~dll~D~e~R~~WD~~l~~~evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri~~~~~~y 258 (434)
...++.+.++ ++|++++++++.|.+.+++|-+.+.++++++..+ + ..+......+.. + ...|+...++ ..++.
T Consensus 14 M~~i~~~~~v-~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~-~-~~~a~l~v~~~g-~-~~~f~srv~~-~~~~~- 86 (158)
T PRK10724 14 MPQISRTALV-PYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTP-G-QMTAAVDVSKAG-I-SKTFTTRNQL-TSNQS- 86 (158)
T ss_pred CCeEEEEEEe-cCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecC-C-EEEEEEEEeeCC-c-cEEEEEEEEe-cCCCE-
Confidence 4578888899 5999999999999999999999999999998643 2 233333344442 2 4556554444 22332
Q ss_pred EEEEeccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEEEEeecCC--CCHHHHHHHHhhchHHHHHHHH
Q 013902 259 YCVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMG--IPKDVAKLAIRHGMWGGVKKLN 336 (434)
Q Consensus 259 vivskSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~~~~DpG--IP~wlvN~av~~g~~~~lkkL~ 336 (434)
|....++. . .+...+.|.++|+++ + +|+|.|.+..+++ ++..+++.+.....-..++..+
T Consensus 87 -I~~~~~~G--------p--F~~l~g~W~f~p~~~----~---~t~V~~~l~fef~s~l~~~~~~~~~~~~~~~mv~AF~ 148 (158)
T PRK10724 87 -ILMQLVDG--------P--FKKLIGGWKFTPLSQ----E---ACRIEFHLDFEFTNKLIELAFGRVFKELASNMVQAFT 148 (158)
T ss_pred -EEEEecCC--------C--hhhccceEEEEECCC----C---CEEEEEEEEEEEchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233332 1 345889999999852 2 3999999999997 8888888887765555555555
Q ss_pred HHHHh
Q 013902 337 SGMKA 341 (434)
Q Consensus 337 ~alrk 341 (434)
+.+++
T Consensus 149 ~Ra~~ 153 (158)
T PRK10724 149 VRAKE 153 (158)
T ss_pred HHHHH
Confidence 55443
No 38
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=98.02 E-value=0.00029 Score=60.14 Aligned_cols=134 Identities=14% Similarity=0.127 Sum_probs=86.5
Q ss_pred EEEEEEEEcCCCHHHHHHHhcCchhhhhhhhhcceeEEEEEecCCCcEEEEEEEeeccccCCceeEEEEEEEe-cCC-EE
Q 013902 181 VYRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWE-AGK-NY 258 (434)
Q Consensus 181 ~yRa~gv~edaspe~V~dll~D~e~R~~WD~~l~~~evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri~~-~~~-~y 258 (434)
.++.+.++ ++|+++|++++.|.+...+|.+.+...+.++..+..|.. .. ..++.. +.+.-++.. +.. ..
T Consensus 2 ~i~~~~~i-~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~g~~-~~--~~~~~g-----~~~~~~i~~~~~~~~~ 72 (140)
T cd07821 2 KVTVSVTI-DAPADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGAV-RT--VTLKDG-----GTVRERLLALDDAERR 72 (140)
T ss_pred cEEEEEEE-CCCHHHHHHHHhCcCchhhhccCcceEEeecCCCCCCeE-EE--EEeCCC-----CEEEEEehhcCccCCE
Confidence 36677889 599999999999999999999988877776532111222 11 122211 222222221 221 21
Q ss_pred EEEEeccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEEEEeecCC--CCHHHHHHHHhhchHHHHHHHH
Q 013902 259 YCVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMG--IPKDVAKLAIRHGMWGGVKKLN 336 (434)
Q Consensus 259 vivskSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~~~~DpG--IP~wlvN~av~~g~~~~lkkL~ 336 (434)
+..+...- ..++..+.+.|.+.|+. +| +|+|+|.++.++. +|.++++.++..++-..+++|+
T Consensus 73 -i~~~~~~~--------~~~~~~~~~~~~~~~~~----~~---~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 136 (140)
T cd07821 73 -YSYRIVEG--------PLPVKNYVATIRVTPEG----DG---GTRVTWTAEFDPPEGLTDELARAFLTGVYRAGLAALK 136 (140)
T ss_pred -EEEEecCC--------CCCcccceEEEEEEECC----CC---ccEEEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 22222210 11233467889999974 22 2999999999994 9999999999998889998888
Q ss_pred HHH
Q 013902 337 SGM 339 (434)
Q Consensus 337 ~al 339 (434)
+.|
T Consensus 137 ~~~ 139 (140)
T cd07821 137 AAL 139 (140)
T ss_pred Hhh
Confidence 765
No 39
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.00 E-value=0.0003 Score=60.52 Aligned_cols=129 Identities=15% Similarity=0.075 Sum_probs=80.0
Q ss_pred EEEEEEcCCCHHHHHHHhcCchhhhhhhhhcceeEEEEEecCCCcEEEEEEEeeccccCCceeEEEEEEEecCCEEEEEE
Q 013902 183 RTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWEAGKNYYCVT 262 (434)
Q Consensus 183 Ra~gv~edaspe~V~dll~D~e~R~~WD~~l~~~evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri~~~~~~yvivs 262 (434)
..+.+| ++|+++|++++.|.+..++|.+.+.+++.+.. .+ ..+..+.|+ ...++|+.... ..+.+.. +..
T Consensus 3 ~~~i~I-~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~---~~---~~~~~~~~~-g~~~~~~~~v~-~~~~~~~-i~~ 72 (139)
T cd07817 3 EKSITV-NVPVEEVYDFWRDFENLPRFMSHVESVEQLDD---TR---SHWKAKGPA-GLSVEWDAEIT-EQVPNER-IAW 72 (139)
T ss_pred eEEEEe-CCCHHHHHHHHhChhhhHHHhhhhcEEEEcCC---Cc---eEEEEecCC-CCcEEEEEEEe-ccCCCCE-EEE
Confidence 346678 69999999999999999999998888777641 11 233446676 45677765322 2223322 333
Q ss_pred eccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEEEEeecCC--CCHH----HHHHHHhhchHHHHHHHH
Q 013902 263 KGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMG--IPKD----VAKLAIRHGMWGGVKKLN 336 (434)
Q Consensus 263 kSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~~~~DpG--IP~w----lvN~av~~g~~~~lkkL~ 336 (434)
.....+ + ...+.|.++|.++ + +|+|+|..+.++. ++.. +++.++++.+...+++|+
T Consensus 73 ~~~~~~-------~----~~~~~~~f~~~~~---~----~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk 134 (139)
T cd07817 73 RSVEGA-------D----PNAGSVRFRPAPG---R----GTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFK 134 (139)
T ss_pred EECCCC-------C----CcceEEEEEECCC---C----CeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHH
Confidence 333221 1 2447777888642 2 3999999999984 6664 445555555555565555
Q ss_pred HHH
Q 013902 337 SGM 339 (434)
Q Consensus 337 ~al 339 (434)
+.+
T Consensus 135 ~~a 137 (139)
T cd07817 135 QLV 137 (139)
T ss_pred HHh
Confidence 443
No 40
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=97.83 E-value=0.0015 Score=59.07 Aligned_cols=135 Identities=16% Similarity=0.121 Sum_probs=86.5
Q ss_pred EEEEcCCCHHHHHHHhcCchhhhhhhhhcceeEEEEEecCCCcEEEEEEEeeccccCCceeEEEEEEEecCCEEEEEEec
Q 013902 185 RTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWEAGKNYYCVTKG 264 (434)
Q Consensus 185 ~gv~edaspe~V~dll~D~e~R~~WD~~l~~~evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri~~~~~~yvivskS 264 (434)
+.++ ++||++|++++.|.+..++|.+.++++++++..+ ++ ..+....+++-.--...|+..+.. +.....+..+.
T Consensus 6 si~i-~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~-~~-~~~r~~i~~~~~g~~~~w~s~~~~--~~~~~~i~~~~ 80 (146)
T cd08860 6 SIVI-DAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDG-DT-VRFRLTMHPDANGTVWSWVSERTL--DPVNRTVRARR 80 (146)
T ss_pred EEEE-cCCHHHHHHHHHhhhhhhhhccceEEEEEEEecC-Ce-EEEEEEEEeccCCEEEEEEEEEEe--cCCCcEEEEEE
Confidence 4567 6999999999999999999999999999998422 22 223333233211012233322222 22223333332
Q ss_pred cCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEEEEeecC--C--CCHHHHHHHHhhchHHHHHHHHHHHH
Q 013902 265 VPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEM--G--IPKDVAKLAIRHGMWGGVKKLNSGMK 340 (434)
Q Consensus 265 V~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~~~~Dp--G--IP~wlvN~av~~g~~~~lkkL~~alr 340 (434)
. +..| .....+.|.++|++ +| |+|+|.+.... | ++..++..++.......+++|++.+.
T Consensus 81 ~--~~~p-------~~~m~~~W~f~~~~----~g----T~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE 143 (146)
T cd08860 81 V--ETGP-------FAYMNIRWEYTEVP----EG----TRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKIE 143 (146)
T ss_pred e--cCCC-------cceeeeeEEEEECC----CC----EEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHhh
Confidence 2 2211 23466889999983 34 99999887664 4 55667888888888899988887775
Q ss_pred h
Q 013902 341 A 341 (434)
Q Consensus 341 k 341 (434)
+
T Consensus 144 ~ 144 (146)
T cd08860 144 A 144 (146)
T ss_pred h
Confidence 4
No 41
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=97.78 E-value=0.0013 Score=57.18 Aligned_cols=129 Identities=17% Similarity=0.182 Sum_probs=78.6
Q ss_pred EEEEcCCCHHHHHHHhcCchhhhhhhhhcceeEEEEEecCCCcEEEEEEEeeccccCCceeEEEEE---EEec-CCEEEE
Q 013902 185 RTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRR---IWEA-GKNYYC 260 (434)
Q Consensus 185 ~gv~edaspe~V~dll~D~e~R~~WD~~l~~~evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rr---i~~~-~~~yvi 260 (434)
..+| ++|+++|++++.|.+..++|.+. ..++.++.. .+...++. |++..++.++... .... +..+..
T Consensus 4 s~~i-~ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~~--~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~~~~i~~ 74 (142)
T cd08861 4 SVTV-AAPAEDVYDLLADAERWPEFLPT-VHVERLELD--GGVERLRM-----WATAFDGSVHTWTSRRVLDPEGRRIVF 74 (142)
T ss_pred EEEE-cCCHHHHHHHHHhHHhhhccCCC-ceEEEEEEc--CCEEEEEE-----EEEcCCCcEEEEEEEEEEcCCCCEEEE
Confidence 4567 69999999999999999999998 777777642 22233431 2233344333221 1112 222212
Q ss_pred EEeccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEEEEeecCC--CC--HHHHHHHHhhchHHHHHHHH
Q 013902 261 VTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMG--IP--KDVAKLAIRHGMWGGVKKLN 336 (434)
Q Consensus 261 vskSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~~~~DpG--IP--~wlvN~av~~g~~~~lkkL~ 336 (434)
....... +...+.+.|.++|++. | +|+|+|....+++ +| .-++..++...+...|+.|+
T Consensus 75 ~~~~~~~----------~~~~~~g~w~~~~~~~----~---~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk 137 (142)
T cd08861 75 RQEEPPP----------PVASMSGEWRFEPLGG----G---GTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALR 137 (142)
T ss_pred EEeeCCC----------ChhhheeEEEEEECCC----C---cEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHH
Confidence 1111111 3456788999999742 2 3999999999996 43 34555666666666676665
Q ss_pred HHH
Q 013902 337 SGM 339 (434)
Q Consensus 337 ~al 339 (434)
+.+
T Consensus 138 ~~~ 140 (142)
T cd08861 138 AAA 140 (142)
T ss_pred HHh
Confidence 554
No 42
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=97.60 E-value=0.0098 Score=50.68 Aligned_cols=131 Identities=18% Similarity=0.134 Sum_probs=75.5
Q ss_pred EEEEEEEEcCCCHHHHHHHhcCchhhhhhhhhcceeEEEEEecCCCcEEEEEEEeeccccCCceeEEEEEEEecCCEEEE
Q 013902 181 VYRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWEAGKNYYC 260 (434)
Q Consensus 181 ~yRa~gv~edaspe~V~dll~D~e~R~~WD~~l~~~evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri~~~~~~yvi 260 (434)
.+..+..+ +++|+++++++.|.+...+|.+.+..++.+. .+|..+. ........ ..+......+..++..+.
T Consensus 3 ~~~~~~~v-~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~---~~~~~~~-~~~~~~g~---~~~~~~i~~~~~~~~~~~ 74 (139)
T PF10604_consen 3 KVEVSIEV-PAPPEAVWDLLSDPENWPRWWPGVKSVELLS---GGGPGTE-RTVRVAGR---GTVREEITEYDPEPRRIT 74 (139)
T ss_dssp EEEEEEEE-SS-HHHHHHHHTTTTGGGGTSTTEEEEEEEE---ECSTEEE-EEEEECSC---SEEEEEEEEEETTTTEEE
T ss_pred EEEEEEEE-CCCHHHHHHHHhChhhhhhhhhceEEEEEcc---cccccee-EEEEeccc---cceeEEEEEecCCCcEEE
Confidence 45667788 5999999999999999999999888887765 2344222 22232221 112211112233233332
Q ss_pred EEeccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEEEEeecCCCCHHH----HHHHHhhchHHHHHHHH
Q 013902 261 VTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMGIPKDV----AKLAIRHGMWGGVKKLN 336 (434)
Q Consensus 261 vskSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~~~~DpGIP~wl----vN~av~~g~~~~lkkL~ 336 (434)
..- +. .+ +..+.+.|.+.|.+ +| |+|++..+.++++|.++ +..++...+-..+++|+
T Consensus 75 ~~~-~~-------~~---~~~~~~~~~~~~~~----~g----t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 135 (139)
T PF10604_consen 75 WRF-VP-------SG---FTNGTGRWRFEPVG----DG----TRVTWTVEFEPGLPGWLAGPLLRPAVKRIVREALENLK 135 (139)
T ss_dssp EEE-ES-------SS---SCEEEEEEEEEEET----TT----EEEEEEEEEEESCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEE-Ee-------cc---eeEEEEEEEEEEcC----CC----EEEEEEEEEEEeccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 221 11 12 23457889999973 34 99999999997555554 44444444444455544
Q ss_pred HH
Q 013902 337 SG 338 (434)
Q Consensus 337 ~a 338 (434)
+.
T Consensus 136 ~~ 137 (139)
T PF10604_consen 136 RA 137 (139)
T ss_dssp HH
T ss_pred cc
Confidence 44
No 43
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.27 E-value=0.021 Score=48.47 Aligned_cols=129 Identities=21% Similarity=0.222 Sum_probs=73.1
Q ss_pred EEEEcCCCHHHHHHHhcCchhhhhhhhhcceeEEEEEec-CCCcEEEEEEEeeccccCCceeEEEEEEEe-cCCEEEEEE
Q 013902 185 RTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECP-LTGTMIVQWIKKFPFFCSDREYIIGRRIWE-AGKNYYCVT 262 (434)
Q Consensus 185 ~gv~edaspe~V~dll~D~e~R~~WD~~l~~~evLe~~~-~dg~~IVY~~~k~PwPvS~RDfV~~Rri~~-~~~~yvivs 262 (434)
+..+ ++|+++|++++.|.+...+|.+.+..++.+...+ ..|.. +.....++. ..+-..-++.. +.+.++..
T Consensus 4 ~~~i-~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~-~~~~~~~~g----~~~~~~~~v~~~~p~~~~~~- 76 (140)
T cd08865 4 SIVI-ERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTR-YHQVRKFLG----RRIELTYEITEYEPGRRVVF- 76 (140)
T ss_pred EEEE-cCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccE-EEEEEEecC----ceEEEEEEEEEecCCcEEEE-
Confidence 4567 5999999999999999999999887777764221 11333 222322221 11111112221 23333222
Q ss_pred eccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEEEEeecCCCC----HHHHHHHHhhchHHHHHHHHHH
Q 013902 263 KGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMGIP----KDVAKLAIRHGMWGGVKKLNSG 338 (434)
Q Consensus 263 kSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~~~~DpGIP----~wlvN~av~~g~~~~lkkL~~a 338 (434)
.... +.++ +...|.+.|.+ +| |++++....+++.+ ..++...++..+-.++++|++.
T Consensus 77 ~~~~--------~~~~---~~~~~~~~~~~----~~----t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~ 137 (140)
T cd08865 77 RGSS--------GPFP---YEDTYTFEPVG----GG----TRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKAL 137 (140)
T ss_pred EecC--------CCcc---eEEEEEEEEcC----Cc----eEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 2211 1122 46789998863 24 89999998888632 3345555555555566555554
Q ss_pred H
Q 013902 339 M 339 (434)
Q Consensus 339 l 339 (434)
+
T Consensus 138 ~ 138 (140)
T cd08865 138 L 138 (140)
T ss_pred h
Confidence 4
No 44
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.26 E-value=0.02 Score=46.88 Aligned_cols=130 Identities=15% Similarity=0.100 Sum_probs=74.0
Q ss_pred EEEEEEcCCCHHHHHHHhcCchhhhhhhhhcceeEEEEEecCCCcEEEEEEEeeccccCCceeEEEEEEEe-c-CCEEEE
Q 013902 183 RTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWE-A-GKNYYC 260 (434)
Q Consensus 183 Ra~gv~edaspe~V~dll~D~e~R~~WD~~l~~~evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri~~-~-~~~yvi 260 (434)
+.+..+ ++|+++|++++.|.+...+|.+.+..+++++.. ........ ...+. -.+.+....++.. + +..+..
T Consensus 2 ~~~~~i-~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~-~~~~~~~~~~v~~~~~~~~~~~ 75 (141)
T cd07812 2 EASIEI-PAPPEAVWDLLSDPERWPEWSPGLERVEVLGGG--EGGVGARF--VGGRK-GGRRLTLTSEVTEVDPPRPGRF 75 (141)
T ss_pred cEEEEe-CCCHHHHHHHHhChhhhhhhCcccceEEEcCCC--CccceeEE--EEEec-CCccccceEEEEEecCCCceEE
Confidence 356678 499999999999999999999988888777531 11111111 11111 1121222222221 1 121222
Q ss_pred EEeccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEEEEeecCC--C---CHHHHHHHHhhchHHHHHHH
Q 013902 261 VTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMG--I---PKDVAKLAIRHGMWGGVKKL 335 (434)
Q Consensus 261 vskSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~~~~DpG--I---P~wlvN~av~~g~~~~lkkL 335 (434)
...+.+++ ......|.+.+.++ +| |++++.+..++. + +..+++..+...+..+++++
T Consensus 76 ~~~~~~~~-----------~~~~~~~~~~~~~~---~~----t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (141)
T cd07812 76 RVTGGGGG-----------VDGTGEWRLEPEGD---GG----TRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRAL 137 (141)
T ss_pred EEecCCCC-----------cceeEEEEEEECCC---Cc----EEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHH
Confidence 22222111 46778898988742 13 999999998885 3 45566666665555555554
Q ss_pred H
Q 013902 336 N 336 (434)
Q Consensus 336 ~ 336 (434)
+
T Consensus 138 ~ 138 (141)
T cd07812 138 K 138 (141)
T ss_pred H
Confidence 4
No 45
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.13 E-value=0.025 Score=50.12 Aligned_cols=129 Identities=19% Similarity=0.123 Sum_probs=71.2
Q ss_pred EEEEEEEcCCCHHHHHHHhcCchhhhhhhhhcceeEEEEE-ecCCCc-EEEEEEEeeccccCCceeEEEEEEEe-cCCEE
Q 013902 182 YRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEE-CPLTGT-MIVQWIKKFPFFCSDREYIIGRRIWE-AGKNY 258 (434)
Q Consensus 182 yRa~gv~edaspe~V~dll~D~e~R~~WD~~l~~~evLe~-~~~dg~-~IVY~~~k~PwPvS~RDfV~~Rri~~-~~~~y 258 (434)
|-..-.| ++||++|++++.|.+..++|.+.+.++++++. .+ .+. ....+....+.+ .++.+.-++.+ +....
T Consensus 3 ~~~~~~i-~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~-~~~g~~~~~~~~~~~~---~~~~~~~~v~~~~p~~~ 77 (146)
T cd07824 3 FHTVWRI-PAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDE-AGIGARRRYTWRGLLP---YRLRFELRVTRIEPLSL 77 (146)
T ss_pred ceEEEEe-cCCHHHHHHHHhChhhcchhhhceEEEEEccCCCC-CCcceEEEEEEEecCC---cEEEEEEEEEeecCCcE
Confidence 3345567 59999999999999999999998888888762 11 111 112111111112 22333223222 33333
Q ss_pred EEEEeccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEEEEeecCC---------CCHHHHHHHHhhchH
Q 013902 259 YCVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMG---------IPKDVAKLAIRHGMW 329 (434)
Q Consensus 259 vivskSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~~~~DpG---------IP~wlvN~av~~g~~ 329 (434)
+... . ..+ .+ ....|.|+|.+ +| |+|+|....+.+ |...+++.+.++.+.
T Consensus 78 ~~~~-~-~g~--------~~---~~~~~~~~~~~----~g----t~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 136 (146)
T cd07824 78 LEVR-A-SGD--------LE---GVGRWTLAPDG----SG----TVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMR 136 (146)
T ss_pred EEEE-E-EEe--------ee---EEEEEEEEEcC----CC----EEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHH
Confidence 3322 1 111 11 24678888852 34 999999888862 444455555554444
Q ss_pred HHHHHHH
Q 013902 330 GGVKKLN 336 (434)
Q Consensus 330 ~~lkkL~ 336 (434)
.++++|+
T Consensus 137 ~~~~~L~ 143 (146)
T cd07824 137 AGEKGLA 143 (146)
T ss_pred hHHHHHH
Confidence 4444443
No 46
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=96.89 E-value=0.071 Score=45.57 Aligned_cols=129 Identities=17% Similarity=0.115 Sum_probs=73.3
Q ss_pred EEEEEEEcCCCHHHHHHHhcCchhhhhhhhhcceeEEEEEecCCCcEEEEEEEeeccccCCceeEEEEEEEe-c-CCEEE
Q 013902 182 YRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWE-A-GKNYY 259 (434)
Q Consensus 182 yRa~gv~edaspe~V~dll~D~e~R~~WD~~l~~~evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri~~-~-~~~yv 259 (434)
+..+.+| ++|++.|++++.|.+..++|.+.+..++.+...+..|... ....+. ...+.. ++.+ + +..+.
T Consensus 3 ~~~~~~i-~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~~~G~~~---~~~~~~---~~~~~~--~i~~~~p~~~~~ 73 (138)
T cd08862 3 FEATIVI-DAPPERVWAVLTDVENWPAWTPSVETVRLEGPPPAVGSSF---KMKPPG---LVRSTF--TVTELRPGHSFT 73 (138)
T ss_pred EEEEEEE-cCCHHHHHHHHHhhhhcccccCcceEEEEecCCCCCCcEE---EEecCC---CCceEE--EEEEecCCCEEE
Confidence 4556778 5999999999999999999999888877765321123321 222222 111111 1111 2 23222
Q ss_pred EEEeccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEEEEeecCC---CCHHHHHHHHhhchHHHHHHHH
Q 013902 260 CVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMG---IPKDVAKLAIRHGMWGGVKKLN 336 (434)
Q Consensus 260 ivskSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~~~~DpG---IP~wlvN~av~~g~~~~lkkL~ 336 (434)
. .+.. + ...+...|.+.+.++ +| |++++.+..... +...++..++..++...+++|+
T Consensus 74 ~--~~~~----~-------~~~~~~~~~~~~~~~---~~----t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk 133 (138)
T cd08862 74 W--TGPA----P-------GISAVHRHEFEAKPD---GG----VRVTTSESLSGPLAFLFGLFVGKKLRALLPEWLEGLK 133 (138)
T ss_pred E--EecC----C-------CEEEEEEEEEEEcCC---Cc----EEEEEEEEeecchHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 2 2211 1 123457888888631 23 899877644421 3234556666666777777766
Q ss_pred HHH
Q 013902 337 SGM 339 (434)
Q Consensus 337 ~al 339 (434)
+.+
T Consensus 134 ~~~ 136 (138)
T cd08862 134 AAA 136 (138)
T ss_pred HHh
Confidence 654
No 47
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.88 E-value=0.063 Score=45.64 Aligned_cols=137 Identities=16% Similarity=0.149 Sum_probs=74.1
Q ss_pred EEEEEEEcCCCHHHHHHHhcCchhhhhhhhhcceeEEEEEecCCCcEEEEEEEeeccccCCceeEEEEEEEe-cCCEEEE
Q 013902 182 YRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWE-AGKNYYC 260 (434)
Q Consensus 182 yRa~gv~edaspe~V~dll~D~e~R~~WD~~l~~~evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri~~-~~~~yvi 260 (434)
+..+.+| ++|+++|++++.|.+...+|.+.+..++... ...|..+.+ ....+- .+.+.+..++.+ +.+..+.
T Consensus 2 v~~~~~i-~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~--~~~G~~~~~-~~~~~~---~~~~~~~~~v~~~~p~~~~~ 74 (141)
T cd07822 2 ISTEIEI-NAPPEKVWEVLTDFPSYPEWNPFVRSATGLS--LALGARLRF-VVKLPG---GPPRSFKPRVTEVEPPRRLA 74 (141)
T ss_pred eEEEEEe-cCCHHHHHHHHhccccccccChhheeEeccc--cCCCCEEEE-EEeCCC---CCcEEEEEEEEEEcCCCEeE
Confidence 4556778 5999999999999999999998665554431 234555444 333321 233333333322 3232232
Q ss_pred EEeccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEEEEeecCCCCHHHHHHHHhhchHHHHHHHHHHHH
Q 013902 261 VTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMGIPKDVAKLAIRHGMWGGVKKLNSGMK 340 (434)
Q Consensus 261 vskSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~~~~DpGIP~wlvN~av~~g~~~~lkkL~~alr 340 (434)
. +....+. +.......|.+.|.+. +| |++++... -.|.+..+....+...+-.-++++...++
T Consensus 75 ~-~~~~~~~--------~~~~~~~~~~~~~~~~---~~----T~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~L~ 137 (141)
T cd07822 75 W-RGGLPFP--------GLLDGEHSFELEPLGD---GG----TRFVHRET-FSGLLAPLVLLGLGRDLRAGFEAMNEALK 137 (141)
T ss_pred E-EecCCCC--------cEeeEEEEEEEEEcCC---Cc----EEEEEeeE-EEEEEhHHhhhhhHHHHhHhHHHHHHHHH
Confidence 2 2222110 0123556788888632 23 89887642 23544445444455455555555555555
Q ss_pred hh
Q 013902 341 AY 342 (434)
Q Consensus 341 kY 342 (434)
++
T Consensus 138 ~~ 139 (141)
T cd07822 138 AR 139 (141)
T ss_pred Hh
Confidence 44
No 48
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=96.19 E-value=0.18 Score=47.88 Aligned_cols=142 Identities=18% Similarity=0.174 Sum_probs=89.9
Q ss_pred CCeEEEEEEEEcCCCHHHHHHHhcCchhhhhhhhhcceeEEEEEecCCCcEEEEEEEeeccccCCceeEEEEEEEecCCE
Q 013902 178 GPAVYRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWEAGKN 257 (434)
Q Consensus 178 gl~~yRa~gv~edaspe~V~dll~D~e~R~~WD~~l~~~evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri~~~~~~ 257 (434)
+..+.....++ |.|+|+|+++-.|.++.+.|++++.+++++++.. -+|..+.|--. +|--..++..+-..
T Consensus 68 ~~i~v~~~V~I-~kPae~vy~~W~dLe~lP~~Mkhl~SVkVlddkr------SrW~~~ap~g~---~v~Wea~it~d~~~ 137 (217)
T COG5637 68 KPIEVEVQVTI-DKPAEQVYAYWRDLENLPLWMKHLDSVKVLDDKR------SRWKANAPLGL---EVEWEAEITKDIPG 137 (217)
T ss_pred CceEEEEEEEe-CChHHHHHHHHHhhhhhhHHHHhhceeeccCCCc------cceeEcCCCCc---eEEEeehhhccCCC
Confidence 34555666678 6999999999999999999999999999997432 56888888422 22222333333222
Q ss_pred EEEEEeccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEEEEeecCC-CCHHHHHHHHhhchHHHHHHHH
Q 013902 258 YYCVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMG-IPKDVAKLAIRHGMWGGVKKLN 336 (434)
Q Consensus 258 yvivskSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~~~~DpG-IP~wlvN~av~~g~~~~lkkL~ 336 (434)
-.|...|++-..+ ++.|.||.+ +.++ +. +..+|++ .|.-|| +-.-++|.++...+-..+..=-
T Consensus 138 e~I~W~Sl~Ga~v-~NsG~VrF~---------~~pg---~~--t~V~v~l-sY~~Pgg~~~a~va~~fgeepeqqI~~DL 201 (217)
T COG5637 138 ERIQWESLPGARV-ENSGAVRFY---------DAPG---DS--TEVKVTL-SYRPPGGLLGAVVAKLFGEEPEQQIQDDL 201 (217)
T ss_pred cEEeeecCCCCcC-CCCccEEee---------eCCC---Cc--eEEEEEE-EecCCccHHHHHHHHHhccchHHHHHHHH
Confidence 3677788875433 477888854 4432 22 2233443 335556 6666888888877766665433
Q ss_pred HHHHhhHhh
Q 013902 337 SGMKAYQNA 345 (434)
Q Consensus 337 ~alrkY~~~ 345 (434)
..++.|++-
T Consensus 202 ~RFk~~~e~ 210 (217)
T COG5637 202 ERFKEYQEN 210 (217)
T ss_pred HHHHHHHHc
Confidence 344455443
No 49
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=95.95 E-value=0.31 Score=42.64 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=31.0
Q ss_pred EEEEEEEcCCCHHHHHHHhcCchhhhhhhhhcceeEEEE
Q 013902 182 YRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLE 220 (434)
Q Consensus 182 yRa~gv~edaspe~V~dll~D~e~R~~WD~~l~~~evLe 220 (434)
+....+| ++|+++|++++.|.+..++|++.+...+.++
T Consensus 4 ~~~s~~I-~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~ 41 (150)
T cd07818 4 VERSIVI-NAPPEEVFPYVNDLKNWPEWSPWEKLDPDMK 41 (150)
T ss_pred EEEEEEE-eCCHHHHHHHHhCcccCcccCchhhcCcceE
Confidence 4456678 5999999999999999999999776655543
No 50
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=95.91 E-value=0.37 Score=42.55 Aligned_cols=133 Identities=11% Similarity=0.007 Sum_probs=73.3
Q ss_pred EEEEcCCCHHHHHHHhcCchhhhhhhhhcceeEEEEEecCCCcEEEEEEEeeccccCCceeEEEEEEEe-c--CCEEEEE
Q 013902 185 RTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWE-A--GKNYYCV 261 (434)
Q Consensus 185 ~gv~edaspe~V~dll~D~e~R~~WD~~l~~~evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri~~-~--~~~yviv 261 (434)
+..+ +++|+.+++++.|++....|.+-++..+.+ . +++.......+.. +++ ..|...-++.+ + +..+.+.
T Consensus 4 ~~~v-~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~---~-~~~~~~~~~~~~g-~~~-~~~~~~~~~~~~~~~~~~~~~~ 76 (146)
T cd07823 4 EFTV-PAPPDRVWALLLDIERVAPCLPGASLTEVE---G-DDEYKGTVKVKLG-PIS-ASFKGTARLLEDDEAARRAVLE 76 (146)
T ss_pred eEEe-cCCHHHHHHHhcCHHHHHhcCCCceecccc---C-CCeEEEEEEEEEc-cEE-EEEEEEEEEEeccCCCcEEEEE
Confidence 4567 599999999999999999999954444432 2 2233233333332 222 23332222222 1 2223232
Q ss_pred EeccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEEEEeecC-C-C---CHHHHHHHHhhchHHHHHHHH
Q 013902 262 TKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEM-G-I---PKDVAKLAIRHGMWGGVKKLN 336 (434)
Q Consensus 262 skSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~~~~Dp-G-I---P~wlvN~av~~g~~~~lkkL~ 336 (434)
..+.+ ....+.++ ....|.+.|. ++| |+|+|....++ | | ...+++.++++.+-.|+++|+
T Consensus 77 ~~g~~----~~~~g~~~---~~~~~~l~~~----~~g----T~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~ 141 (146)
T cd07823 77 ATGKD----ARGQGTAE---ATVTLRLSPA----GGG----TRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLE 141 (146)
T ss_pred EEEec----CCCcceEE---EEEEEEEEec----CCc----EEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHH
Confidence 22211 01112222 2334666662 234 99999999998 4 4 444577777777777777776
Q ss_pred HHH
Q 013902 337 SGM 339 (434)
Q Consensus 337 ~al 339 (434)
+.+
T Consensus 142 ~~~ 144 (146)
T cd07823 142 ARL 144 (146)
T ss_pred HHh
Confidence 654
No 51
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=95.73 E-value=0.84 Score=38.84 Aligned_cols=134 Identities=15% Similarity=0.129 Sum_probs=72.2
Q ss_pred EEEEEEcCCCHHHHHHHhcCchhhhhhhhhcceeEEEEEecCCCcEEEEEEEeeccccCCceeEEEEEEE-ecCCEEEEE
Q 013902 183 RTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIW-EAGKNYYCV 261 (434)
Q Consensus 183 Ra~gv~edaspe~V~dll~D~e~R~~WD~~l~~~evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri~-~~~~~yviv 261 (434)
....+| ++|+++|++++.|.+..++|.+.+...+ ++ ...|....+.. ..+. +..+-..-++. .+.+..+..
T Consensus 3 ~~s~~I-~a~~~~Vw~~l~d~~~~~~w~~~~~~~~-~~--~~~Gg~~~~~~-~~~~---g~~~~~~~~i~~~~~~~~i~~ 74 (139)
T cd07814 3 TIEREF-DAPPELVWRALTDPELLAQWFGPTTTAE-MD--LRVGGRWFFFM-TGPD---GEEGWVSGEVLEVEPPRRLVF 74 (139)
T ss_pred EEEEEe-cCCHHHHHHHcCCHHHHHhhhCcCCceE-Ec--ccCCceEEEEE-ECCC---CCEEeccEEEEEEcCCCeEEE
Confidence 445678 5999999999999999999988522222 11 12333323222 2111 11222222222 122222222
Q ss_pred EeccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEEEEeecCC-CCHHHHHHHHhhchHHHHHHHHHHHH
Q 013902 262 TKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMG-IPKDVAKLAIRHGMWGGVKKLNSGMK 340 (434)
Q Consensus 262 skSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~~~~DpG-IP~wlvN~av~~g~~~~lkkL~~alr 340 (434)
. ....+. |+ . ......|.|.|.+ +| |+|++.+..-++ .|.......++.+...++.+|+..|.
T Consensus 75 ~-~~~~~~-~~---~---~~~~~~~~~~~~~----~~----T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E 138 (139)
T cd07814 75 T-WAFSDE-TP---G---PETTVTVTLEETG----GG----TRLTLTHSGFPEEDAEQEAREGMEEGWTGTLDRLKALLE 138 (139)
T ss_pred E-ecccCC-CC---C---CceEEEEEEEECC----CC----EEEEEEEEccChHhHHHHHHhCHhhHHHHHHHHHHHHhh
Confidence 1 111111 11 1 1356778888874 23 999998877765 55445555666677777777776664
No 52
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=95.04 E-value=0.26 Score=45.09 Aligned_cols=122 Identities=15% Similarity=0.110 Sum_probs=72.8
Q ss_pred eEEEEEEEEcCCCHHHHHHHhcCchhhhhhhhhcceeEEEEEecCCCcEEEEEEEeeccccCCceeEEEEEEEecCCEEE
Q 013902 180 AVYRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWEAGKNYY 259 (434)
Q Consensus 180 ~~yRa~gv~edaspe~V~dll~D~e~R~~WD~~l~~~evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri~~~~~~yv 259 (434)
..|.....++ .+|++++++..|.+.+++.-|.|...+++++.+.+ .+--..+.+-. =|+.-..|-....+.. .
T Consensus 2 ~~~~~s~lv~-y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~~~~--l~A~l~V~~k~---i~e~F~Trv~~~~~~~-~ 74 (146)
T COG2867 2 PQIERTALVP-YSASQMFDLVNDVESYPEFLPWCSASRVLERNERE--LIAELDVGFKG---IRETFTTRVTLKPTAR-S 74 (146)
T ss_pred CeeEeeeecc-CCHHHHHHHHHHHHhCchhccccccceEeccCcce--eEEEEEEEhhh---eeeeeeeeeeecCchh-h
Confidence 3466677785 99999999999999999999999999999864421 11111111111 1222222222211111 3
Q ss_pred EEEeccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEEEEeecCC--CCHHHHHHHHh
Q 013902 260 CVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMG--IPKDVAKLAIR 325 (434)
Q Consensus 260 ivskSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~~~~DpG--IP~wlvN~av~ 325 (434)
|-.+.++-| .| ...++|.|.|+.. + +|+|.+...-++. |=.-+......
T Consensus 75 I~~~l~~GP--------Fk--~L~~~W~F~pl~~---~----~ckV~f~ldfeF~s~ll~~~~g~~f~ 125 (146)
T COG2867 75 IDMKLIDGP--------FK--YLKGGWQFTPLSE---D----ACKVEFFLDFEFKSRLLGALIGPVFK 125 (146)
T ss_pred hhhhhhcCC--------hh--hhcCceEEEECCC---C----ceEEEEEEEeeehhHHHHHHHHHHHH
Confidence 333333322 22 4679999999842 2 4999999888874 44444443333
No 53
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=93.61 E-value=3.3 Score=36.08 Aligned_cols=36 Identities=22% Similarity=0.074 Sum_probs=32.4
Q ss_pred EEEEEcCCCHHHHHHHhcCchhhhhhhhhcceeEEEE
Q 013902 184 TRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLE 220 (434)
Q Consensus 184 a~gv~edaspe~V~dll~D~e~R~~WD~~l~~~evLe 220 (434)
.+..| ++|+++|++++.|.++...|.+.+.++++++
T Consensus 3 ~s~~I-~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~ 38 (137)
T cd07820 3 RSTVI-PAPIEEVFDFHSRPDNLERLTPPWLEFAVLG 38 (137)
T ss_pred EEEEc-CCCHHHHHHHHcCcchHHhcCCCCCCeEEEe
Confidence 45667 6999999999999999999999999999986
No 54
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=92.96 E-value=3.2 Score=35.86 Aligned_cols=29 Identities=17% Similarity=0.068 Sum_probs=25.4
Q ss_pred EEEEEEEcCCCHHHHHHHhcCchhhhhhhh
Q 013902 182 YRTRTVFEGATPELVRDFFWDDEFRRKWDH 211 (434)
Q Consensus 182 yRa~gv~edaspe~V~dll~D~e~R~~WD~ 211 (434)
+..+-+| ++||+.|++++.|.+..++|++
T Consensus 2 i~~~~~i-~ap~e~Vw~~l~d~~~~~~W~~ 30 (144)
T cd07825 2 VSVSRTV-DAPAEAVFAVLADPRRHPEIDG 30 (144)
T ss_pred eEEEEEE-eCCHHHHHHHHhCccccceeCC
Confidence 3456678 5999999999999999999997
No 55
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=88.95 E-value=15 Score=32.22 Aligned_cols=139 Identities=12% Similarity=0.021 Sum_probs=69.8
Q ss_pred EEEEEEEcCCCHHHHHHHhcCchhhhhhhhhc-ceeEEEEEecCCCcEEEEEEEeeccccCCceeEEEEEEE-ecCCEEE
Q 013902 182 YRTRTVFEGATPELVRDFFWDDEFRRKWDHML-AYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIW-EAGKNYY 259 (434)
Q Consensus 182 yRa~gv~edaspe~V~dll~D~e~R~~WD~~l-~~~evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri~-~~~~~yv 259 (434)
+..+-.| ++|+++|++++.|++...+|-.-- -.+...+.....|....| ....| ...+|-..-++. -+....+
T Consensus 2 l~i~r~i-~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~d~~~GG~~~~-~~~~~---~g~~~~~~g~v~~i~p~~~l 76 (146)
T cd08896 2 LVLSRTI-DAPRELVWRAWTEPELLKQWFCPKPWTTEVAELDLRPGGAFRT-VMRGP---DGEEFPNPGCFLEVVPGERL 76 (146)
T ss_pred eEEEEEe-CCCHHHHHHHcCCHHHHhccCCCCCccceEEEEEeecCcEEEE-EEECC---CCCEecceEEEEEEeCCCEE
Confidence 4556788 599999999999999999995410 011212211223444333 21222 123343222222 2333333
Q ss_pred EEEeccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEEEEeecCC--CCHHHHHHHHhhchHHHHHHHHH
Q 013902 260 CVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMG--IPKDVAKLAIRHGMWGGVKKLNS 337 (434)
Q Consensus 260 ivskSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~~~~DpG--IP~wlvN~av~~g~~~~lkkL~~ 337 (434)
..+.......-|...... ...|.|.+.+ +| |++++.+. .+. .........+..|....+.+|+.
T Consensus 77 ~~t~~~~~~~~~~~~~~~-----~v~~~~~~~~----~g----T~Ltl~~~-~~~~~~~~~~~~~~~~~GW~~~l~~L~~ 142 (146)
T cd08896 77 VFTDALTPGWRPAEKPFM-----TAIITFEDEG----GG----TRYTARAR-HWTEADRKQHEEMGFHDGWGTAADQLAA 142 (146)
T ss_pred EEEEeecCCcCCCCCCcE-----EEEEEEEecC----Cc----EEEEEEEE-eCCHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 333332211122222222 2347777752 34 89987533 222 22233445556788888888776
Q ss_pred HH
Q 013902 338 GM 339 (434)
Q Consensus 338 al 339 (434)
.+
T Consensus 143 ~l 144 (146)
T cd08896 143 LA 144 (146)
T ss_pred HH
Confidence 65
No 56
>KOG3845 consensus MLN, STAR and related lipid-binding proteins [Lipid transport and metabolism]
Probab=88.20 E-value=0.048 Score=53.75 Aligned_cols=166 Identities=11% Similarity=-0.084 Sum_probs=96.7
Q ss_pred ceEEEeecCC-CCCeEEEEEEEEcCCCHHHHHHHhcCchhhhhhhhhcceeEEEEEecCCCcEEEEEEEeecc----ccC
Q 013902 167 TYQAWRSEPE-TGPAVYRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPF----FCS 241 (434)
Q Consensus 167 ~ikVwrR~~e-sgl~~yRa~gv~edaspe~V~dll~D~e~R~~WD~~l~~~evLe~~~~dg~~IVY~~~k~Pw----PvS 241 (434)
.+.++++..+ .....++...++. ........++.-..-+..|+.-..-...++... .++.++ ..-++- .++
T Consensus 35 ~v~~~~~a~~~~~~~i~~v~~~~~-lf~~~~~~~i~~~~~i~~~~~g~~v~~~~~~~~--~~~~~~-~s~~~~~~~~i~~ 110 (241)
T KOG3845|consen 35 LVTVESLAGEKPKGNISRVRRFFC-LFVTEDLVFISLLWLIELLQNGPEVYNMLEKIQ--KNTDIW-TSEFDSFNVDIFR 110 (241)
T ss_pred eeEEeccCCcCcCCcccccceeec-cccccchheeecchhhHHHhccchHHHHHHHHH--hheeee-eEecHhhhhhccc
Confidence 6777777655 5667788888773 333333333322222333333212223333221 122233 333332 579
Q ss_pred CceeEEEEEEEe-cCCEEEEEEeccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEEEEeecC-C-CCHH
Q 013902 242 DREYIIGRRIWE-AGKNYYCVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEM-G-IPKD 318 (434)
Q Consensus 242 ~RDfV~~Rri~~-~~~~yvivskSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~~~~Dp-G-IP~w 318 (434)
.|+|+......+ ........++.+.++.++++..++|..+|.+++...+++.++ ..+.-.-..|.|. | .|+.
T Consensus 111 ~~~~i~~~~v~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~n~~~~~~~~~l~~~~-----~~~~~~~~~~~d~rg~~~~~ 185 (241)
T KOG3845|consen 111 PRVFIDSGSVFRLEHMINIPVTTCVSRAFLSAKVILVRGYNHPCGVFCVPLPIEP-----FILAWLREWFLDLRGLPQEN 185 (241)
T ss_pred ccccCCcceEeehhhccccccceeccchhhcccceeeeccCCcceEEEEEcCCcc-----hhHHHHHHHHhhcccCCCcc
Confidence 999998777654 444445677888999999999999999999999999997653 1233334555666 5 5555
Q ss_pred HHHHHHhhchHHHHHHHHHHHHh
Q 013902 319 VAKLAIRHGMWGGVKKLNSGMKA 341 (434)
Q Consensus 319 lvN~av~~g~~~~lkkL~~alrk 341 (434)
..+......+..+..+..++...
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~ 208 (241)
T KOG3845|consen 186 VGERPEARTLVNFELAPLKAPKA 208 (241)
T ss_pred ccccccccccchhhcchhhcccc
Confidence 66655555555555444444333
No 57
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=85.79 E-value=20 Score=30.22 Aligned_cols=133 Identities=15% Similarity=0.025 Sum_probs=69.3
Q ss_pred EEEEEEEcCCCHHHHHHHhcCchhhhhhhhhcceeEEEEEecCCCcEEEEEEEeeccccCCceeEEEEEEE-ecCCEEEE
Q 013902 182 YRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIW-EAGKNYYC 260 (434)
Q Consensus 182 yRa~gv~edaspe~V~dll~D~e~R~~WD~~l~~~evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri~-~~~~~yvi 260 (434)
+..+.+| ++||+.|++++.|.+..++|..-.. .+.....|..+.+ ....+ +++.+.-++. .+.+..++
T Consensus 2 ~~~~~~i-~ap~e~Vw~~~td~~~~~~W~~~~~----~~~~~~~G~~~~~-~~~~~-----~~~~~~~~v~~~~~~~~l~ 70 (136)
T cd08893 2 FVYVTYI-RATPEKVWQALTDPEFTRQYWGGTT----VESDWKVGSAFEY-RRGDD-----GTVDVEGEVLESDPPRRLV 70 (136)
T ss_pred eEEEEEe-cCCHHHHHHHHcCchhhhheecccc----cccCCcCCCeEEE-EeCCC-----cccccceEEEEecCCCeEE
Confidence 4567788 5999999999999999999986411 1211234555444 22221 1222222221 12222232
Q ss_pred EEeccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEEEEeecCCCCHHHHHHHHhhchHHHHHHHHHHHH
Q 013902 261 VTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMGIPKDVAKLAIRHGMWGGVKKLNSGMK 340 (434)
Q Consensus 261 vskSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~~~~DpGIP~wlvN~av~~g~~~~lkkL~~alr 340 (434)
..-... ..++ ........-.|.|.+.+ +| |++++.++.-+. ..........|...++.+|+..+.
T Consensus 71 ~~~~~~--~~~~---~~~~~~~~v~~~l~~~~----~~----t~l~~~~~~~~~--~~~~~~~~~~gw~~~l~~Lk~~~e 135 (136)
T cd08893 71 HTWRAV--WDPE---MAAEPPSRVTFEIEPVG----DV----VKLTVTHDGFPP--GSPTLEGVSGGWPAILSSLKTLLE 135 (136)
T ss_pred EEEecC--CCcc---cCCCCCEEEEEEEEecC----Cc----EEEEEEecCCCC--chhHHHhhhcCHHHHHHHHHHHhc
Confidence 222111 1111 11122344556677753 23 788877665432 113445566778888888776653
No 58
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=85.08 E-value=31 Score=31.76 Aligned_cols=132 Identities=17% Similarity=0.070 Sum_probs=67.1
Q ss_pred EEEEEEEcCCCHHHHHHHhcCchhhhhhhhhcceeEEEEEecCCCcEEEEEEEeeccccCCceeEEEEEEEe---cCCEE
Q 013902 182 YRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWE---AGKNY 258 (434)
Q Consensus 182 yRa~gv~edaspe~V~dll~D~e~R~~WD~~l~~~evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri~~---~~~~y 258 (434)
|-.+-.+ ++|||+++++|.|++....=-+ -++-++... ++.......+.+ |++ ++|--..++.. ..+.|
T Consensus 3 ~~G~f~V-~~p~e~Vw~~L~dpe~~a~ciP---G~qs~e~~g--~e~~~~v~l~ig-~l~-~~~~g~~~~~~v~~~~~~~ 74 (146)
T COG3427 3 YEGTFRV-AAPPEAVWEFLNDPEQVAACIP---GVQSVETNG--DEYTAKVKLKIG-PLK-GTFSGRVRFVNVDEPPRSI 74 (146)
T ss_pred ccceEEe-cCCHHHHHHHhcCHHHHHhhcC---CcceeeecC--CeEEEEEEEeec-cee-EEEEEEEEEccccCCCcEE
Confidence 4556677 5999999999999998887777 444454321 233333333433 455 44443333221 23334
Q ss_pred EEEEeccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEEEEeecCC-C----CHHHHHHHHhhchHHHHH
Q 013902 259 YCVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMG-I----PKDVAKLAIRHGMWGGVK 333 (434)
Q Consensus 259 vivskSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~~~~DpG-I----P~wlvN~av~~g~~~~lk 333 (434)
.+-.++- +.-+. ..+.--+.-.++ +.| |++.|....|.| + =..++.-++.+-.-.+++
T Consensus 75 ~i~g~G~---------~~~g~--~~~~~~v~l~~~--g~g----t~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~~~ 137 (146)
T COG3427 75 TINGSGG---------GAAGF--ADGTVDVQLEPS--GEG----TRVNWFADANVGGKLAQLGSRLIDSVARKLINRFFD 137 (146)
T ss_pred EEEeecc---------cccce--eeeeeEEEEEEc--CCC----cEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3433330 00011 111112222222 233 899999999997 3 333444444444444554
Q ss_pred HHHHH
Q 013902 334 KLNSG 338 (434)
Q Consensus 334 kL~~a 338 (434)
+|...
T Consensus 138 ~l~~~ 142 (146)
T COG3427 138 CLSSE 142 (146)
T ss_pred HHHHH
Confidence 44443
No 59
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=83.45 E-value=33 Score=30.73 Aligned_cols=34 Identities=26% Similarity=0.224 Sum_probs=30.9
Q ss_pred CCCeEEEEEEEEcCCCHHHHHHHhcCchhhhhhhh
Q 013902 177 TGPAVYRTRTVFEGATPELVRDFFWDDEFRRKWDH 211 (434)
Q Consensus 177 sgl~~yRa~gv~edaspe~V~dll~D~e~R~~WD~ 211 (434)
+|...+..+.+| ++|+++|++++.|++...+|..
T Consensus 8 ~~~~~i~~~~~i-~Ap~e~Vw~altdp~~~~~W~~ 41 (157)
T cd08899 8 DGGATLRFERLL-PAPIEDVWAALTDPERLARWFA 41 (157)
T ss_pred CCCeEEEEEEec-CCCHHHHHHHHcCHHHHHhhcC
Confidence 466788999999 5999999999999999999998
No 60
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=79.88 E-value=40 Score=29.31 Aligned_cols=132 Identities=14% Similarity=0.018 Sum_probs=67.1
Q ss_pred EEEEEEEcCCCHHHHHHHhcCchhhhhhhh-hcceeEEEEEecCCCcEEEEEEEeeccccCCceeEEEEEEE-ecCCEEE
Q 013902 182 YRTRTVFEGATPELVRDFFWDDEFRRKWDH-MLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIW-EAGKNYY 259 (434)
Q Consensus 182 yRa~gv~edaspe~V~dll~D~e~R~~WD~-~l~~~evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri~-~~~~~yv 259 (434)
+..+-.| ++|+++|++++.|++...+|-. .--.+...+.....|....| ....| ...+|-..-++. -+.+..+
T Consensus 2 l~~~r~i-~ap~e~Vw~a~t~p~~l~~W~~p~~~~~~~~~~d~~~GG~~~~-~~~~~---~g~~~~~~g~v~e~~p~~~l 76 (139)
T cd08894 2 IVTTRVI-DAPRDLVFAAWTDPEHLAQWWGPEGFTNTTHEFDLRPGGRWRF-VMHGP---DGTDYPNRIVFLEIEPPERI 76 (139)
T ss_pred EEEEEEe-CCCHHHHHHHhCCHHHHhhccCcCCCcceEEEEEecCCCEEEE-EEECC---CCCEecceEEEEEEcCCCEE
Confidence 4556778 5999999999999999999953 10011222211223443222 22222 223333222222 2333334
Q ss_pred EEEeccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEEEEeecCCCC--HHHHHHHHhhchHHHHHHHHH
Q 013902 260 CVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMGIP--KDVAKLAIRHGMWGGVKKLNS 337 (434)
Q Consensus 260 ivskSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~~~~DpGIP--~wlvN~av~~g~~~~lkkL~~ 337 (434)
..+-... + ....-.|.|.|.. +| |++++.+. ..+.. ...+...+..|.-..+.+|..
T Consensus 77 ~~t~~~~----~--------~~~~v~~~~~~~~----~g----T~ltl~~~-~~~~~~~~~~~~~~~~~Gw~~~l~~L~~ 135 (139)
T cd08894 77 VYDHGSG----P--------PRFRLTVTFEEQG----GK----TRLTWRQV-FPTAAERCEKIKFGAVEGNEQTLDRLAA 135 (139)
T ss_pred EEEeccC----C--------CcEEEEEEEEECC----CC----EEEEEEEE-cCCHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 3333221 1 1133457777752 23 89988763 22211 112345566667677777766
Q ss_pred HH
Q 013902 338 GM 339 (434)
Q Consensus 338 al 339 (434)
.+
T Consensus 136 ~l 137 (139)
T cd08894 136 YL 137 (139)
T ss_pred HH
Confidence 54
No 61
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=77.62 E-value=40 Score=27.99 Aligned_cols=121 Identities=18% Similarity=0.200 Sum_probs=62.9
Q ss_pred CCCHHHHHHHhcCchhhhhhhhhcceeEEEEEecCCCcEEEEEEEeeccccCCceeEEEEEEEe-cCCEEEEEEeccCCC
Q 013902 190 GATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWE-AGKNYYCVTKGVPYP 268 (434)
Q Consensus 190 daspe~V~dll~D~e~R~~WD~~l~~~evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri~~-~~~~yvivskSV~hp 268 (434)
|+|+++|++++.|.+...+| . .....+.....|..+.+ .. + ...++...-++.. ..+..+.......
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W--~--~~~~~~~~~~~Gg~~~~--~~-~---~g~~~~~~~~v~~~~p~~~i~~~~~~~-- 68 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQW--F--TTSEAEMDFRPGGSFRF--MD-P---DGGEFGFDGTVLEVEPPERIVFTWRMP-- 68 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHH--S--EEEEEEEECSTTEEEEE--EE-T---TSEEEEEEEEEEEEETTTEEEEEEEEE--
T ss_pred CcCHHHHHHHHCCHhHHhhc--c--CCCcceeeeecCCEEEE--Ee-c---CCCCceeeEEEEEEeCCEEEEEEEEcc--
Confidence 58999999999999999999 1 22222222234655444 22 2 2344444333322 3333333322221
Q ss_pred CCCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEEEEeecCCCCHHHHHHH-HhhchHHHHHHHHHHH
Q 013902 269 ALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMGIPKDVAKLA-IRHGMWGGVKKLNSGM 339 (434)
Q Consensus 269 ~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~~~~DpGIP~wlvN~a-v~~g~~~~lkkL~~al 339 (434)
..+. .....-.+.+.+.+ + .|++++.+. |+|..-.... ...|...++.+|++.|
T Consensus 69 ~~~~------~~~~~v~~~~~~~~----~----~T~l~~~~~---~~~~~~~~~~~~~~gw~~~l~~L~~~l 123 (124)
T PF08327_consen 69 DDPD------GPESRVTFEFEEEG----G----GTRLTLTHS---GFPDDDEEEEGMEQGWEQMLDRLKAYL 123 (124)
T ss_dssp TSSS------CEEEEEEEEEEEET----T----EEEEEEEEE---EEHSHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CCCC------CCceEEEEEEEEcC----C----cEEEEEEEE---cCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111 33445556666731 2 388888772 2222222222 6667777787776654
No 62
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=68.23 E-value=83 Score=27.54 Aligned_cols=137 Identities=20% Similarity=0.224 Sum_probs=67.4
Q ss_pred EEEEEEcCCCHHHHHHHhcCchhhhhhhhhcc-eeEEEEEecCCC-cEEEEEEEeecc--ccCCceeEEEEEEEe-cCCE
Q 013902 183 RTRTVFEGATPELVRDFFWDDEFRRKWDHMLA-YVKTLEECPLTG-TMIVQWIKKFPF--FCSDREYIIGRRIWE-AGKN 257 (434)
Q Consensus 183 Ra~gv~edaspe~V~dll~D~e~R~~WD~~l~-~~evLe~~~~dg-~~IVY~~~k~Pw--PvS~RDfV~~Rri~~-~~~~ 257 (434)
..+..| ++|++.|++++.|.+...+|-.--. .+.+.+.....| ...+++....+- .-...++...-++.+ +.+.
T Consensus 3 ~~~r~i-~ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v~p~~ 81 (146)
T cd08895 3 RLHRVI-AAPPERVYRAFLDPDALAKWLPPDGMTGTVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLELVPNE 81 (146)
T ss_pred EEEEEE-CCCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEecccCCeEEEEEEcCCccccccCCcEeeeEEEEEEEcCCC
Confidence 445678 5999999999999999999975211 222222112223 333333222110 001233443333322 3333
Q ss_pred EEEEEeccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEEEEeecCCCCHHHHHHHHhhchHHHHHHHHH
Q 013902 258 YYCVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMGIPKDVAKLAIRHGMWGGVKKLNS 337 (434)
Q Consensus 258 yvivskSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~~~~DpGIP~wlvN~av~~g~~~~lkkL~~ 337 (434)
.+...-....+..|. ...-.|.+.+.+ +| |++++.+.. +|..........|.-.++.+|++
T Consensus 82 ~i~~~~~~~~~~~~~--------~~~v~~~~~~~~----~~----T~lt~~~~~---~~~~~~~~~~~~GW~~~l~~L~~ 142 (146)
T cd08895 82 RIVYTDVFDDPSLSG--------EMTMTWTLSPVS----GG----TDVTIVQSG---IPDGIPPEDCELGWQESLANLAA 142 (146)
T ss_pred EEEEEEEecCCCCCc--------eEEEEEEEEecC----CC----EEEEEEEeC---CCchhhhhHHHHHHHHHHHHHHH
Confidence 333332222233221 123445666642 23 888887753 34333334555566667776665
Q ss_pred HH
Q 013902 338 GM 339 (434)
Q Consensus 338 al 339 (434)
.+
T Consensus 143 ~l 144 (146)
T cd08895 143 LV 144 (146)
T ss_pred Hh
Confidence 54
No 63
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=67.01 E-value=94 Score=27.73 Aligned_cols=114 Identities=17% Similarity=0.042 Sum_probs=66.2
Q ss_pred EEEEEEEcCCCHHHHHHHhcCch--hhhhhhhhcceeEEEEEecCCCcEEEEEEEeeccccCCceeEEEEEE-EecCCEE
Q 013902 182 YRTRTVFEGATPELVRDFFWDDE--FRRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRI-WEAGKNY 258 (434)
Q Consensus 182 yRa~gv~edaspe~V~dll~D~e--~R~~WD~~l~~~evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri-~~~~~~y 258 (434)
+..+.++ ++|++++++++.|.. ..+.|-+.+.++++++-....| .+-.+. ++--. +.-.+.-++ ..++...
T Consensus 3 ~~~e~~i-~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~G-svR~~~--~~~~~--~~~~~kE~l~~~D~~~~ 76 (148)
T cd07816 3 LEHEVEL-KVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPG-SIKLIT--FGPGG--KVKYVKERIDAVDEENK 76 (148)
T ss_pred EEEEEEe-cCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCc-eEEEEE--EcCCC--cceEEEEEEEEEccccc
Confidence 5667788 599999999999987 3577999999999887321112 333333 22111 112222233 2344334
Q ss_pred EEEEeccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEEEEeecC
Q 013902 259 YCVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEM 313 (434)
Q Consensus 259 vivskSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~~~~Dp 313 (434)
.+..+-++-+ .+. -....|.+.+.+.|.. +++ |.+.|...-++
T Consensus 77 ~~~y~vveg~-~~~----~~~~~y~~t~~v~~~~---~~~----t~v~Wt~~ye~ 119 (148)
T cd07816 77 TYKYTVIEGD-VLK----DGYKSYKVEIKFVPKG---DGG----CVVKWTIEYEK 119 (148)
T ss_pred EEEEEEEecc-ccc----CceEEEEEEEEEEECC---CCC----EEEEEEEEEEE
Confidence 4333333321 110 1467889999998862 123 88888777665
No 64
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=64.71 E-value=1e+02 Score=27.19 Aligned_cols=131 Identities=16% Similarity=0.088 Sum_probs=69.6
Q ss_pred EEEEcCCCHHHHHHHhcCchhhhhhhhhcceeEEEEEecCCCcEEEEEEEeeccccCCceeEEEEEEE--ecCCEEEEEE
Q 013902 185 RTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIW--EAGKNYYCVT 262 (434)
Q Consensus 185 ~gv~edaspe~V~dll~D~e~R~~WD~~l~~~evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri~--~~~~~yvivs 262 (434)
...+ ++++++++++|.|++.-..=-| .++.++... ++.-.....+.. |++-+ |-..-++. ..++.+.+..
T Consensus 2 s~~v-~a~~~~vw~~l~D~~~l~~ciP---G~~~~e~~~--~~~~~~~~v~vG-~i~~~-~~g~~~~~~~~~~~~~~~~~ 73 (140)
T PF06240_consen 2 SFEV-PAPPEKVWAFLSDPENLARCIP---GVESIEKVG--DEYKGKVKVKVG-PIKGT-FDGEVRITEIDPPESYTLEF 73 (140)
T ss_dssp EEEE-CS-HHHHHHHHT-HHHHHHHST---TEEEEEEEC--TEEEEEEEEESC-CCEEE-EEEEEEEEEEETTTEEEEEE
T ss_pred cEEe-cCCHHHHHHHhcCHHHHHhhCC---CcEEeeecC--cEEEEEEEEEec-cEEEE-EEEEEEEEEcCCCcceEeee
Confidence 3567 5999999999999885555444 666676543 233222233332 33221 32222222 2344443444
Q ss_pred eccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEEEEeecC-C----CCHHHHHHHHhhchHHHHHHHHH
Q 013902 263 KGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEM-G----IPKDVAKLAIRHGMWGGVKKLNS 337 (434)
Q Consensus 263 kSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~~~~Dp-G----IP~wlvN~av~~g~~~~lkkL~~ 337 (434)
++... .+-.++. ....+...+ ++ . |+|.|....+. | +...++..++++-+-.|+++|+.
T Consensus 74 ~g~g~------~~~~~~~---~~~~~~~~~----~~--~-T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~~~f~~~l~~ 137 (140)
T PF06240_consen 74 EGRGR------GGGSSAS---ANITLSLED----DG--G-TRVTWSADVEVGGPLASLGQRLIESVARRLIEQFFENLER 137 (140)
T ss_dssp EEEEC------TCCEEEE---EEEEEEECC----CT--C-EEEEEEEEEEEECHHHHC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred eccCC------ccceEEE---EEEEEEcCC----CC--C-cEEEEEEEEEEccCHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44331 1222322 222233321 22 2 99999999999 5 77777777777777777877766
Q ss_pred HH
Q 013902 338 GM 339 (434)
Q Consensus 338 al 339 (434)
.+
T Consensus 138 ~l 139 (140)
T PF06240_consen 138 KL 139 (140)
T ss_dssp HH
T ss_pred hc
Confidence 53
No 65
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=59.31 E-value=2.7 Score=46.30 Aligned_cols=71 Identities=18% Similarity=0.127 Sum_probs=58.8
Q ss_pred ccCCceeEEEEEEEecCCEEEEEEeccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEEEEeecC-C-CC
Q 013902 239 FCSDREYIIGRRIWEAGKNYYCVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEM-G-IP 316 (434)
Q Consensus 239 PvS~RDfV~~Rri~~~~~~yvivskSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~~~~Dp-G-IP 316 (434)
|...|||+..| +.++++..++.|...+.-.| ||+-...+.+.|.|.. -|+ ++++|+.-.|. | .|
T Consensus 575 ph~~~~~~ViR------gacv~a~~svk~~~a~~l~~-vrA~~~~~r~liep~g----~g~---sr~~~i~r~dlkg~~~ 640 (674)
T KOG2200|consen 575 PHPSRDFGVIR------GACVLAPLSVKVSMAIQLGG-VRATVLDSRFLIEPCG----GGQ---SRVTHICRVDLKGRSP 640 (674)
T ss_pred CCCCCCceeee------eeeeecccccchhhhhhhcc-chhhhhhhhhhccccC----Ccc---hhhhhhhhhhcccCCc
Confidence 45789999888 56788899999866666677 9999999999999973 354 79999999999 5 99
Q ss_pred HHHHHHH
Q 013902 317 KDVAKLA 323 (434)
Q Consensus 317 ~wlvN~a 323 (434)
.|.-+.+
T Consensus 641 ~wy~k~f 647 (674)
T KOG2200|consen 641 EWYNKSF 647 (674)
T ss_pred hhhhccc
Confidence 9987765
No 66
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=58.55 E-value=57 Score=31.96 Aligned_cols=127 Identities=16% Similarity=0.220 Sum_probs=80.8
Q ss_pred CeEEEEEEEEcCCCHHHHHHHhcCchhhhhhhhhcceeEEEEEecCCCcEEEEEEEeeccccCCceeEEEEEEEecCCEE
Q 013902 179 PAVYRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWEAGKNY 258 (434)
Q Consensus 179 l~~yRa~gv~edaspe~V~dll~D~e~R~~WD~~l~~~evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri~~~~~~y 258 (434)
.+.|...-.+ +++|+++++++.|.+.+++.-+.++..++.++.+ ++..+--...-||. + +=.|+..... ....
T Consensus 67 ~k~Y~errli-gysp~~my~vVS~V~~Y~~FVPwC~kS~V~~~~P-~~~~kA~LeVGFk~-l-~E~y~S~Vt~-~~p~-- 139 (227)
T KOG3177|consen 67 EKAYSERRLI-GYSPSEMYSVVSNVSEYHEFVPWCKKSDVTSRRP-SGPLKADLEVGFKP-L-DERYTSNVTC-VKPH-- 139 (227)
T ss_pred HHHHHHHhhh-CCCHHHHHHHHHhHHHhhccccceeccceeecCC-CCCceeeEEecCcc-c-chhheeeeEE-eccc--
Confidence 3457777788 6999999999999999999999999999999765 45555555555663 2 2334432211 1111
Q ss_pred EEEEeccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEEEEeecCC--CCHHHHHHHHhh
Q 013902 259 YCVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMG--IPKDVAKLAIRH 326 (434)
Q Consensus 259 vivskSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~~~~DpG--IP~wlvN~av~~ 326 (434)
..+.+.+ ++ .=......-|.|.|-++-+ ++|.+-+..-.... |=..+++++...
T Consensus 140 --l~kt~~~------d~-rLF~~L~t~Wsf~pg~~~p-----~tc~ldf~v~FeF~S~lhs~va~~Ffd~ 195 (227)
T KOG3177|consen 140 --LTKTVCA------DG-RLFNHLITIWSFKPGPNIP-----RTCTLDFSVSFEFKSLLHSQVATIFFDE 195 (227)
T ss_pred --ceEEeec------cc-cHHHhhhheeeeccCCCCC-----CeEEEEEEEEEEehhHHHHHHHHHHHHH
Confidence 0111111 11 1122456889999976332 35888887777765 777777777653
No 67
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=53.89 E-value=1.5e+02 Score=25.70 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=23.8
Q ss_pred EEEEEEcCCCHHHHHHHhcCchhhhhhhh
Q 013902 183 RTRTVFEGATPELVRDFFWDDEFRRKWDH 211 (434)
Q Consensus 183 Ra~gv~edaspe~V~dll~D~e~R~~WD~ 211 (434)
+....| ++|++.|++.+.|++...+|-.
T Consensus 3 ~~~~~i-~ap~e~Vw~a~t~p~~l~~W~~ 30 (136)
T cd08901 3 KTAMLI-RRPVAEVFEAFVDPEITTKFWF 30 (136)
T ss_pred eEEEEe-cCCHHHHHHHhcCHHHhccccc
Confidence 455678 5999999999999999999843
No 68
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=52.52 E-value=1.7e+02 Score=26.15 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=30.1
Q ss_pred CCeEEEEEEEEcCCCHHHHHHHhcCchhhhhhhh
Q 013902 178 GPAVYRTRTVFEGATPELVRDFFWDDEFRRKWDH 211 (434)
Q Consensus 178 gl~~yRa~gv~edaspe~V~dll~D~e~R~~WD~ 211 (434)
....++.+.+| ++||+.|++++.|++.+.+|-.
T Consensus 6 ~~~~~~~er~i-~aP~e~Vf~A~Tdpe~l~~W~~ 38 (149)
T COG3832 6 EDRTLEIERLI-DAPPEKVFEALTDPELLARWFM 38 (149)
T ss_pred CCceEEEEEee-cCCHHHHHHHhcCHHHHHhhcC
Confidence 45678999999 5999999999999999999987
No 69
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=50.40 E-value=12 Score=26.29 Aligned_cols=18 Identities=33% Similarity=0.818 Sum_probs=16.2
Q ss_pred hhhHHHHHHHHHhhhccc
Q 013902 27 CAVPIWLAVMIGLVIGWS 44 (434)
Q Consensus 27 ~~~p~~~~~~~~~~~gw~ 44 (434)
+|.|+-++++.+++|||.
T Consensus 14 LAAP~iagIi~s~iv~w~ 31 (35)
T PF13940_consen 14 LAAPIIAGIIASLIVGWL 31 (35)
T ss_pred hHhHHHHHHHHHHHHHHH
Confidence 478999999999999994
No 70
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=46.00 E-value=2e+02 Score=24.93 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=25.0
Q ss_pred EEEEEEEcCCCHHHHHHHhcCchhhhhhhh
Q 013902 182 YRTRTVFEGATPELVRDFFWDDEFRRKWDH 211 (434)
Q Consensus 182 yRa~gv~edaspe~V~dll~D~e~R~~WD~ 211 (434)
+..+-.| ++|+++|++.+.|++...+|-.
T Consensus 2 ~~i~r~~-~ap~e~Vw~a~tdp~~l~~W~~ 30 (143)
T cd08900 2 FTLERTY-PAPPERVFAAWSDPAARARWFV 30 (143)
T ss_pred EEEEEEe-CCCHHHHHHHhcCHHHHHhcCC
Confidence 4556778 5999999999999999999964
No 71
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=40.88 E-value=30 Score=29.89 Aligned_cols=28 Identities=25% Similarity=0.308 Sum_probs=24.4
Q ss_pred EEEEEEEcCCCHHHHHHHhcCchhhhhhh
Q 013902 182 YRTRTVFEGATPELVRDFFWDDEFRRKWD 210 (434)
Q Consensus 182 yRa~gv~edaspe~V~dll~D~e~R~~WD 210 (434)
+..+-.| ++|+++|++.+.|++...+|-
T Consensus 2 ~~~~~~~-~ap~e~Vw~a~td~e~~~~W~ 29 (133)
T cd08897 2 ITVETTV-DAPIEKVWEAWTTPEHITKWN 29 (133)
T ss_pred EEEEEEe-CCCHHHHHHHhCCHHHHhhCC
Confidence 3456778 699999999999999999994
No 72
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=40.76 E-value=27 Score=25.30 Aligned_cols=19 Identities=32% Similarity=0.758 Sum_probs=16.3
Q ss_pred HHhhhhHHHHHHHHHhhhc
Q 013902 24 ILLCAVPIWLAVMIGLVIG 42 (434)
Q Consensus 24 ~~~~~~p~~~~~~~~~~~g 42 (434)
.++++||.-.|++.|++-|
T Consensus 7 fa~iMVPVvma~ilglIyG 25 (41)
T PF10766_consen 7 FAVIMVPVVMALILGLIYG 25 (41)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999866
No 73
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=40.69 E-value=2.5e+02 Score=24.50 Aligned_cols=136 Identities=15% Similarity=0.064 Sum_probs=68.7
Q ss_pred EEEEEEEcCCCHHHHHHHhcCchhhhhhhhhcc-eeEEEEEecCCCcEEEEEEEeeccccCCceeEEEEEEEe-cCCEEE
Q 013902 182 YRTRTVFEGATPELVRDFFWDDEFRRKWDHMLA-YVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWE-AGKNYY 259 (434)
Q Consensus 182 yRa~gv~edaspe~V~dll~D~e~R~~WD~~l~-~~evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri~~-~~~~yv 259 (434)
+..+-.| ++||+.|++.+.|++...+|-..-. .+...+.....|....+.. ..| ...++.+.-.+.+ +....+
T Consensus 2 l~i~r~~-~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d~r~GG~~~~~~-~~~---~g~~~~~~g~~~ei~p~~~l 76 (142)
T cd07826 2 IVITREF-DAPRELVFRAHTDPELVKRWWGPRGLTMTVCECDIRVGGSYRYVH-RAP---DGEEMGFHGVYHEVTPPERI 76 (142)
T ss_pred EEEEEEE-CCCHHHHHHHhCCHHHHhhccCCCCCcceEEEEeccCCCEEEEEE-ECC---CCCEecceEEEEEEcCCCEE
Confidence 4556778 5999999999999999999976321 1222322222344433321 111 1233333222222 333333
Q ss_pred EEEeccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEEEEeecCC--CCHHHHHHHHhhchHHHHHHHHH
Q 013902 260 CVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMG--IPKDVAKLAIRHGMWGGVKKLNS 337 (434)
Q Consensus 260 ivskSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~~~~DpG--IP~wlvN~av~~g~~~~lkkL~~ 337 (434)
........ .|+ ....-.+.+.+.+ +| |++++..+ -+. .-.-.....+..|....+.+|.+
T Consensus 77 ~~t~~~~~--~~~-------~~s~v~~~l~~~~----~g----T~l~l~~~-~~~~~~~~~~~~~~~~~Gw~~~l~~L~~ 138 (142)
T cd07826 77 VQTEEFEG--LPD-------GVALETVTFTELG----GR----TRLTATSR-YPSKEARDGVLASGMEEGMEESYDRLDE 138 (142)
T ss_pred EEEeEecC--CCC-------CceEEEEEEEECC----CC----EEEEEEEE-eCCHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33322222 221 1233356676752 23 88887533 222 11113445566777778877776
Q ss_pred HHH
Q 013902 338 GMK 340 (434)
Q Consensus 338 alr 340 (434)
.+.
T Consensus 139 ~l~ 141 (142)
T cd07826 139 LLA 141 (142)
T ss_pred HHh
Confidence 653
No 74
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=39.61 E-value=2.4e+02 Score=23.93 Aligned_cols=30 Identities=20% Similarity=0.191 Sum_probs=26.3
Q ss_pred EEEEEEEcCCCHHHHHHHhcCchhhhhhhhh
Q 013902 182 YRTRTVFEGATPELVRDFFWDDEFRRKWDHM 212 (434)
Q Consensus 182 yRa~gv~edaspe~V~dll~D~e~R~~WD~~ 212 (434)
++.+.+| ++|+++|++++.|.+...+|...
T Consensus 3 i~~~i~i-~a~~e~Vw~~~td~~~~~~W~~~ 32 (145)
T cd08898 3 IERTILI-DAPRERVWRALTDPEHFGQWFGV 32 (145)
T ss_pred eEEEEEe-cCCHHHHHHHhcChhhhhhcccc
Confidence 4566788 59999999999999999999884
No 75
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=39.10 E-value=34 Score=25.26 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=17.2
Q ss_pred HHHHHHhhhhHHHHHHHHHhhhccccCcc
Q 013902 20 TLVDILLCAVPIWLAVMIGLVIGWSWRPR 48 (434)
Q Consensus 20 ~~~~~~~~~~p~~~~~~~~~~~gw~~~p~ 48 (434)
+....+-...-+++.+++-.++.|+|+|+
T Consensus 5 ~~~~~~~~~~~v~~~~~F~gi~~w~~~~~ 33 (49)
T PF05545_consen 5 TLQGFARSIGTVLFFVFFIGIVIWAYRPR 33 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 34444444444555555555677999997
No 76
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=32.79 E-value=3.4e+02 Score=23.71 Aligned_cols=138 Identities=13% Similarity=-0.001 Sum_probs=71.1
Q ss_pred EEEEEEEcCCCHHHHHHHhcCchhhhhhhhh---cc--eeEEEEEecCCCcEEEEEEEeeccccCCceeEEEEEEEecCC
Q 013902 182 YRTRTVFEGATPELVRDFFWDDEFRRKWDHM---LA--YVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWEAGK 256 (434)
Q Consensus 182 yRa~gv~edaspe~V~dll~D~e~R~~WD~~---l~--~~evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri~~~~~ 256 (434)
.+.+-+| ++|++.|++.+.| ...+|-.- .. .....+.....|-...+ ..+ ..+++...+....+..
T Consensus 2 ~~~~~~i-~Ap~e~Vw~a~t~--~l~~W~~p~~~~~~~~~~~~~~d~~~GG~~~~---~~~---~g~~~~~g~v~~v~p~ 72 (149)
T cd08891 2 VRKSVTV-PAPPERAFEVFTE--GFGAWWPPEYHFVFSPGAEVVFEPRAGGRWYE---IGE---DGTECEWGTVLAWEPP 72 (149)
T ss_pred eEEEEEe-cCCHHHHHHHHHh--chhhccCCCcccccCCCccEEEcccCCcEEEE---ecC---CCcEeceEEEEEEcCC
Confidence 4567788 5999999999998 36777531 10 01112211223433322 112 4455544333333444
Q ss_pred EEEEEEeccCCCCCCCCCCCeEeeeeeEEEEEEEeecCCCCCCccceEEEEEEeecCCCC----HHHHHHHHhhchHHHH
Q 013902 257 NYYCVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMGIP----KDVAKLAIRHGMWGGV 332 (434)
Q Consensus 257 ~yvivskSV~hp~~P~~~g~VRve~~~sgwvIrpv~s~~~dG~~~ac~Vty~~~~DpGIP----~wlvN~av~~g~~~~l 332 (434)
..+..+..... ..++...+ ...-.|.|.+..+ +| |++++.+..-...+ .-........|...++
T Consensus 73 ~~l~~tw~~~~-~~~~~~~~----~t~vt~~l~~~~~---~g----T~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L 140 (149)
T cd08891 73 SRLVFTWQINA-DWRPDPDK----ASEVEVRFEAVGA---EG----TRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLL 140 (149)
T ss_pred CEEEEEeccCC-CcCcCCCC----ceEEEEEEEECCC---CC----eEEEEEEecccccCcchhhHHHHhcccCcHHHHH
Confidence 44444333221 11111111 2345677777520 23 88888776543333 3444556777888888
Q ss_pred HHHHHHHH
Q 013902 333 KKLNSGMK 340 (434)
Q Consensus 333 kkL~~alr 340 (434)
.+|+..|.
T Consensus 141 ~~L~~~l~ 148 (149)
T cd08891 141 ERYAAAAE 148 (149)
T ss_pred HHHHHHhc
Confidence 88877664
No 77
>TIGR01599 PYST-A Plasmodium yoelii subtelomeric family PYST-A. A single high-scoring gene was identified in the complete genome of P. falciparum as well as a single gene from P. chaboudi from GenBank which were included in the seed. There are no obvious homologs to these genes in any non-Plasmodium organism. These observations suggest an expansion of this family in yoelii from a common Plasmodium ancestor gene (present in a single copy in falciparum).
Probab=31.42 E-value=5e+02 Score=25.29 Aligned_cols=140 Identities=9% Similarity=0.146 Sum_probs=82.2
Q ss_pred cEEEEeccCCCcceEEEeecCCCCCeEEEEEEEEcCCC-HHHHHHHhcCchhhhhhhhhcceeEEEEEecCCCcEEEEEE
Q 013902 155 WQTLMEKSTPNMTYQAWRSEPETGPAVYRTRTVFEGAT-PELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWI 233 (434)
Q Consensus 155 We~v~dk~~~~~~ikVwrR~~esgl~~yRa~gv~edas-pe~V~dll~D~e~R~~WD~~l~~~evLe~~~~dg~~IVY~~ 233 (434)
-++..... .+-.+|.++.. +...-|..-.+.+.. -.++...|||++.-...|..+...+++..-.. .-.+++.+
T Consensus 38 Y~ly~~~~---~~~~~y~KK~~-ntdI~K~~~~I~~pnkYneIIN~LWdpn~~~~fn~~~ikgki~RvYnp-NLvmiqqr 112 (208)
T TIGR01599 38 YNLYSTPN---PDSTVYYKKDH-NTIIGKIHLTIQDPNKYDAIIKTLWDFNDNKKFGRKFIKGKVVRVYSP-NLIMIQQR 112 (208)
T ss_pred ccccccCC---CCceEEEeecC-CcEEEEEEEEecCchhHHHHHHHHhccccccCCCchheeeeEEEEeCC-CeEEEEee
Confidence 66554432 12345554433 467788888886433 57888899999999999999888888876542 23455555
Q ss_pred EeeccccCCceeEE--EEEEEecCCEEEEEEeccC---CCCCCCC-------------------------CCCeEeeeee
Q 013902 234 KKFPFFCSDREYII--GRRIWEAGKNYYCVTKGVP---YPALPKR-------------------------DKPRRVEHYF 283 (434)
Q Consensus 234 ~k~PwPvS~RDfV~--~Rri~~~~~~yvivskSV~---hp~~P~~-------------------------~g~VRve~~~ 283 (434)
.+-+ +.+.+-|-+ ..++..++++-+|+..|.. |...... .....+....
T Consensus 113 y~~~-~~~~~~YfyaLa~Kv~iSed~TiIv~~S~~ind~n~~~~~~~~n~iv~san~f~~~idse~dir~g~l~k~fvNl 191 (208)
T TIGR01599 113 YKDA-SGSPNKYFYALATKVKVSEDTTIIACTSANINDHNKVDKKNFKNKIIESANSFKTDIDSEEDIRNGELKKMFVNL 191 (208)
T ss_pred cCCC-CCCcceEEeEeeeeeecCCCcEEEEEeccccccCCccccccccceeeeecccccCccCHHHHHHhhhhhheEEee
Confidence 4433 235555655 3344444444444444443 2111111 0245567788
Q ss_pred EEEEEEEeecCCCCCCccceEEEEE
Q 013902 284 SSWVIRAVESLKGDGQLSACEVNLI 308 (434)
Q Consensus 284 sgwvIrpv~s~~~dG~~~ac~Vty~ 308 (434)
+|+.|+.-. | ...|||+
T Consensus 192 ~G~~IkK~~----d----~v~iTyi 208 (208)
T TIGR01599 192 SGFIIKKKD----D----NIDITYV 208 (208)
T ss_pred EEEEEEecC----C----cEEEEEC
Confidence 999998842 2 2677773
No 78
>PRK11876 petM cytochrome b6-f complex subunit PetM; Reviewed
Probab=30.26 E-value=49 Score=22.97 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=18.2
Q ss_pred HHHHHhhhhHHHHHHHHHhhhcc
Q 013902 21 LVDILLCAVPIWLAVMIGLVIGW 43 (434)
Q Consensus 21 ~~~~~~~~~p~~~~~~~~~~~gw 43 (434)
+-||+--|+-.|.-+++||.+|.
T Consensus 2 a~EIf~~A~i~~~LvlvGlalGf 24 (32)
T PRK11876 2 ASEIFGIAALFWVLIPVGLAGGA 24 (32)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888889999988875
No 79
>COG4420 Predicted membrane protein [Function unknown]
Probab=29.60 E-value=91 Score=30.01 Aligned_cols=41 Identities=24% Similarity=0.405 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCchhHHHHHHHHhhhhHHHHHHHHHhhhccccCcc
Q 013902 4 VLFEMMEFLKRPSITETLVDILLCAVPIWLAVMIGLVIGWSWRPR 48 (434)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~gw~~~p~ 48 (434)
..+.+..|++.+++..+++=++ =+|+.+=++++.||+|.|-
T Consensus 47 ~ad~ia~f~Gsw~fil~~~~~l----l~Wi~lNl~~~~~~~wDpy 87 (191)
T COG4420 47 VADKIARFGGSWAFILTFTLLL----LLWIVLNLFLVPGLAWDPY 87 (191)
T ss_pred HHHHHHHHcCChHHHHHHHHHH----HHHHHHHHhhhcCCcCCCc
Confidence 4567788999998888776444 4699999999999999884
No 80
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=28.43 E-value=30 Score=30.85 Aligned_cols=14 Identities=29% Similarity=0.786 Sum_probs=10.5
Q ss_pred HHHHHHHHhhhccc
Q 013902 31 IWLAVMIGLVIGWS 44 (434)
Q Consensus 31 ~~~~~~~~~~~gw~ 44 (434)
+.++++||++||+.
T Consensus 2 ~~i~lvvG~iiG~~ 15 (128)
T PF06295_consen 2 AIIGLVVGLIIGFL 15 (128)
T ss_pred hHHHHHHHHHHHHH
Confidence 46778888888875
No 81
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=27.08 E-value=78 Score=27.17 Aligned_cols=28 Identities=14% Similarity=0.186 Sum_probs=24.1
Q ss_pred EEEEEEcCCCHHHHHHHhcCchhhhhhhh
Q 013902 183 RTRTVFEGATPELVRDFFWDDEFRRKWDH 211 (434)
Q Consensus 183 Ra~gv~edaspe~V~dll~D~e~R~~WD~ 211 (434)
..+-.| ++|++.|++.+.|++...+|-.
T Consensus 3 ~~~r~i-~ap~e~Vw~A~T~~e~l~~W~~ 30 (126)
T cd08892 3 SLTETF-QVPAEELYEALTDEERVQAFTR 30 (126)
T ss_pred EEEEEE-CCCHHHHHHHHCCHHHHHhhcC
Confidence 345678 5999999999999999999954
No 82
>PF08041 PetM: PetM family of cytochrome b6f complex subunit 7; InterPro: IPR012595 This family consists of the PetM family of cytochrome b6f complex subunit IV. The cytochrome b6f complex consists of 7 subunits and contains 2 beta haem's and 1 chlorophyll alpha per cytochrome f. It is highly active in transferring electrons from decylplastoquinol to oxidised plastocyanin [].; GO: 0009512 cytochrome b6f complex; PDB: 2ZT9_F 1Q90_M 2E76_F 2E75_F 2E74_F 2D2C_S 1VF5_S.
Probab=26.64 E-value=68 Score=22.14 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=16.5
Q ss_pred HHHhhhhHHHHHHHHHhhhcc
Q 013902 23 DILLCAVPIWLAVMIGLVIGW 43 (434)
Q Consensus 23 ~~~~~~~p~~~~~~~~~~~gw 43 (434)
||+..|+-.|.-+++||.+|.
T Consensus 2 EIf~~a~i~~~lvlvGla~Gf 22 (31)
T PF08041_consen 2 EIFNIAVICFGLVLVGLALGF 22 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 466677778889999988875
No 83
>TIGR01594 holin_lambda phage holin, lambda family. This model represents one of a large number of mutally dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=25.49 E-value=99 Score=26.93 Aligned_cols=31 Identities=32% Similarity=0.634 Sum_probs=21.2
Q ss_pred cCchhHHHHHHHHhhhh--------------HHHHHHHHHhhhcc
Q 013902 13 KRPSITETLVDILLCAV--------------PIWLAVMIGLVIGW 43 (434)
Q Consensus 13 ~~~~~~~~~~~~~~~~~--------------p~~~~~~~~~~~gw 43 (434)
...+..+++.|-++|++ |-++++++|.+||+
T Consensus 41 ~g~~~~~~llea~mCg~la~~~~~~l~~~g~~~~~a~~~g~~IGf 85 (107)
T TIGR01594 41 MGGKFKRKLIDALMCAAIALVAASALDFLGLPTSLSPFLGGMIGF 85 (107)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhheee
Confidence 35667799999999984 34455555555554
No 84
>PF11772 EpuA: DNA-directed RNA polymerase subunit beta; InterPro: IPR024596 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the short 60-residue long bacterial family that is the beta subunit of the DNA-directed RNA polymerase, likely to be 2.7.7.6 from EC It is membrane-bound and is referred to by the name EpuA.
Probab=25.25 E-value=40 Score=25.27 Aligned_cols=14 Identities=50% Similarity=0.862 Sum_probs=11.7
Q ss_pred HHHHHHHHhhhccc
Q 013902 31 IWLAVMIGLVIGWS 44 (434)
Q Consensus 31 ~~~~~~~~~~~gw~ 44 (434)
+-+++++||+||++
T Consensus 8 ~~~~l~iGlmIGY~ 21 (47)
T PF11772_consen 8 AILALAIGLMIGYG 21 (47)
T ss_pred HHHHHHHHHHeeee
Confidence 45788999999986
No 85
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=23.33 E-value=57 Score=28.61 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=19.6
Q ss_pred CCCHHHHHHHhcCchhhhhhh
Q 013902 190 GATPELVRDFFWDDEFRRKWD 210 (434)
Q Consensus 190 daspe~V~dll~D~e~R~~WD 210 (434)
++||++|++.+.|++...+|-
T Consensus 2 ~ap~e~Vw~A~Tdp~~l~~w~ 22 (132)
T PTZ00220 2 YVPPEVLYNAFLDAYTLTRLS 22 (132)
T ss_pred CCCHHHHHHHHcCHHHHHHHh
Confidence 599999999999999999994
No 86
>COG3330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.04 E-value=96 Score=30.27 Aligned_cols=37 Identities=22% Similarity=0.408 Sum_probs=25.7
Q ss_pred eccccCCceeEEEEEEEecCCEEEEEEeccC--CCCCCC
Q 013902 236 FPFFCSDREYIIGRRIWEAGKNYYCVTKGVP--YPALPK 272 (434)
Q Consensus 236 ~PwPvS~RDfV~~Rri~~~~~~yvivskSV~--hp~~P~ 272 (434)
+|.|+++|||++---....++.++.+.+|.+ -|..++
T Consensus 117 i~ip~~d~DY~idiGyl~~dG~fl~laRS~~vrtP~~~~ 155 (215)
T COG3330 117 IPIPVSDRDYLIDIGYLTPDGRFLTLARSNPVRTPRAYP 155 (215)
T ss_pred eccCCCccceEEEeeeEcCCCcEEEEEecccccCCCCCc
Confidence 5778999999986555556777887766654 344444
No 87
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=22.32 E-value=1.1e+02 Score=22.90 Aligned_cols=19 Identities=32% Similarity=0.714 Sum_probs=13.0
Q ss_pred HHHHHHHHhhhccccCccc
Q 013902 31 IWLAVMIGLVIGWSWRPRW 49 (434)
Q Consensus 31 ~~~~~~~~~~~gw~~~p~~ 49 (434)
++..+++-.+|.|+.+|+=
T Consensus 17 ~~~~~~Figiv~wa~~p~~ 35 (48)
T cd01324 17 LYLALFFLGVVVWAFRPGR 35 (48)
T ss_pred HHHHHHHHHHHHHHhCCCc
Confidence 3444555567889999963
Done!