BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013903
(434 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B3K|A Chain A, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3K|B Chain B, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3K|C Chain C, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3K|D Chain D, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3K|E Chain E, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3K|F Chain F, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3L|A Chain A, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3L|B Chain B, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3L|C Chain C, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3L|D Chain D, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3L|E Chain E, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3L|F Chain F, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
Length = 479
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 161 NSICPLIKFSHFTANQAIFQALDGADCVHIIDL 193
N I P+I HF A++QA G + H++DL
Sbjct: 108 NGIRPVINLHHFDLPIALYQAYGGWESKHVVDL 140
>pdb|4G0R|A Chain A, Structural Characterization Of H-1 Parvovirus: Comparison
Of Infectious Virions To Replication Defective Particles
pdb|4GBT|A Chain A, Structural Characterization Of H-1 Parvovirus: Comparison
Of Infectious Virions To Replication Defective Particles
Length = 735
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 336 DSIERHTVEQQLFGCEIRNIVAVGGPKRTGEVKVERWGEELKRVGFRPVSLSGN------ 389
+S+ ++ Q+LF ++ + G G+ ++ + +L V+L N
Sbjct: 281 ESLNLDSLSQELFNVVVKTVTEQQG---AGQDAIKVYNNDLTACMM--VALDSNNILPYT 335
Query: 390 PAAQASLLLGMFPWK 404
PAAQ S LG +PWK
Sbjct: 336 PAAQTSETLGFYPWK 350
>pdb|2AN0|A Chain A, Crystal Structure Of The P332g Mutant Of The Bacillus
Subtilis Nos
Length = 361
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 19/89 (21%)
Query: 341 HTVEQQLFGCEIRNIVAVGGPKRTGEVKVERWGEELKRVGFRPVSLSGNPAAQASLLLGM 400
H +E +IR + + P+ GE +VE W +L R G+PA+++
Sbjct: 95 HHIETATNNGKIRPSITIFPPEEKGEKQVEIWNHQLIRYAGYEGEAIGDPASRSLTA--- 151
Query: 401 FPWKGYTLVEENGCLKLGWK----DLSLL 425
C +LGW+ D LL
Sbjct: 152 ------------ACEQLGWRGERTDFDLL 168
>pdb|1M7Z|A Chain A, Structure Of Nitric Oxide Synthase Heme Protein From
Bacillus Subtilis With N-Hydroxy-Arginine And
Tetrahydrofolate Bound
pdb|2FC1|A Chain A, Heme No Complex In Nos
Length = 361
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 19/89 (21%)
Query: 341 HTVEQQLFGCEIRNIVAVGGPKRTGEVKVERWGEELKRVGFRPVSLSGNPAAQASLLLGM 400
H +E +IR + + P+ GE +VE W +L R G+PA+++
Sbjct: 95 HHIETATNNGKIRPSITIFPPEEKGEKQVEIWNHQLIRYAGYEGERIGDPASRSLTA--- 151
Query: 401 FPWKGYTLVEENGCLKLGWK----DLSLL 425
C +LGW+ D LL
Sbjct: 152 ------------ACEQLGWRGERTDFDLL 168
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
pdb|2ANL|B Chain B, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
Length = 327
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 406 YTLVEENGCLKLGWKDLSL 424
YT E +G L LGWKDLS+
Sbjct: 115 YTAAEFDGILGLGWKDLSI 133
>pdb|1QS8|A Chain A, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
pdb|1QS8|B Chain B, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
Length = 329
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 406 YTLVEENGCLKLGWKDLSL 424
Y+ VE +G L LGWKDLS+
Sbjct: 117 YSSVEFDGILGLGWKDLSI 135
>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
pdb|1MIQ|B Chain B, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
Length = 375
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 406 YTLVEENGCLKLGWKDLSL 424
Y+ VE +G L LGWKDLS+
Sbjct: 163 YSSVEFDGILGLGWKDLSI 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,180,164
Number of Sequences: 62578
Number of extensions: 435790
Number of successful extensions: 999
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 993
Number of HSP's gapped (non-prelim): 7
length of query: 434
length of database: 14,973,337
effective HSP length: 102
effective length of query: 332
effective length of database: 8,590,381
effective search space: 2852006492
effective search space used: 2852006492
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)