Query 013903
Match_columns 434
No_of_seqs 155 out of 691
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 08:32:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013903.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013903hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03514 GRAS: GRAS domain fam 100.0 5E-109 1E-113 846.7 35.9 354 77-431 1-374 (374)
2 PRK15451 tRNA cmo(5)U34 methyl 97.2 0.014 3E-07 56.8 15.2 186 161-384 33-226 (247)
3 TIGR02752 MenG_heptapren 2-hep 95.1 1.5 3.4E-05 41.5 16.6 111 176-301 35-149 (231)
4 TIGR02716 C20_methyl_CrtF C-20 94.8 0.54 1.2E-05 47.0 13.2 117 174-306 137-258 (306)
5 TIGR00740 methyltransferase, p 94.2 1.3 2.8E-05 42.6 13.9 101 186-301 53-159 (239)
6 PRK06202 hypothetical protein; 91.8 3.6 7.8E-05 39.3 12.9 112 176-301 50-165 (232)
7 PF13847 Methyltransf_31: Meth 91.8 0.57 1.2E-05 41.7 6.9 101 186-301 3-108 (152)
8 TIGR00477 tehB tellurite resis 90.9 1.6 3.5E-05 40.8 9.4 108 173-298 17-128 (195)
9 PRK14103 trans-aconitate 2-met 90.2 5 0.00011 38.9 12.4 107 176-303 19-126 (255)
10 PRK11207 tellurite resistance 88.7 4.7 0.0001 37.8 10.6 109 174-300 18-131 (197)
11 PF09243 Rsm22: Mitochondrial 87.9 2 4.4E-05 42.7 7.9 136 170-319 13-156 (274)
12 TIGR01934 MenG_MenH_UbiE ubiqu 87.4 24 0.00052 32.6 16.5 116 173-304 26-145 (223)
13 PLN02336 phosphoethanolamine N 87.1 4.9 0.00011 42.7 10.8 109 176-302 27-141 (475)
14 PLN02233 ubiquinone biosynthes 87.1 16 0.00034 35.9 13.6 124 174-316 61-195 (261)
15 PRK12335 tellurite resistance 86.8 4.8 0.0001 40.0 9.9 106 176-299 110-219 (287)
16 TIGR02072 BioC biotin biosynth 85.8 7.1 0.00015 36.5 10.0 100 186-302 34-134 (240)
17 PRK01683 trans-aconitate 2-met 85.5 14 0.00031 35.5 12.3 111 174-303 19-130 (258)
18 PRK00216 ubiE ubiquinone/menaq 85.5 32 0.00069 32.1 15.0 108 178-301 43-156 (239)
19 PRK00107 gidB 16S rRNA methylt 83.8 23 0.0005 33.3 12.4 93 188-302 47-144 (187)
20 TIGR00138 gidB 16S rRNA methyl 82.5 13 0.00028 34.6 10.1 94 188-302 44-141 (181)
21 PRK11036 putative S-adenosyl-L 81.4 12 0.00026 36.3 9.9 108 177-301 36-147 (255)
22 PLN02396 hexaprenyldihydroxybe 80.2 26 0.00057 35.9 12.2 96 187-302 132-234 (322)
23 PRK05785 hypothetical protein; 78.6 40 0.00088 32.3 12.4 91 187-302 52-145 (226)
24 PF12847 Methyltransf_18: Meth 78.6 7.9 0.00017 31.8 6.6 99 189-302 4-110 (112)
25 TIGR02081 metW methionine bios 77.9 35 0.00076 31.5 11.4 54 177-241 6-59 (194)
26 COG4106 Tam Trans-aconitate me 76.6 14 0.0003 36.3 8.3 109 180-307 24-133 (257)
27 PF08242 Methyltransf_12: Meth 76.0 6.7 0.00015 31.8 5.4 91 191-297 1-97 (99)
28 COG0052 RpsB Ribosomal protein 74.6 0.74 1.6E-05 45.4 -0.8 106 186-307 36-169 (252)
29 PF08241 Methyltransf_11: Meth 74.3 9 0.0002 29.9 5.6 87 191-300 1-94 (95)
30 TIGR03438 probable methyltrans 74.0 29 0.00064 34.8 10.5 116 178-305 57-179 (301)
31 PLN02336 phosphoethanolamine N 73.1 61 0.0013 34.4 13.2 108 174-302 254-368 (475)
32 TIGR03587 Pse_Me-ase pseudamin 73.1 27 0.00059 33.0 9.5 99 189-305 46-145 (204)
33 PRK10258 biotin biosynthesis p 71.7 94 0.002 29.8 13.0 107 173-301 29-138 (251)
34 PTZ00098 phosphoethanolamine N 71.7 54 0.0012 32.2 11.5 113 170-301 36-154 (263)
35 PF02353 CMAS: Mycolic acid cy 71.3 24 0.00051 35.2 8.9 111 175-302 51-165 (273)
36 smart00828 PKS_MT Methyltransf 70.8 26 0.00056 32.9 8.7 96 189-301 2-102 (224)
37 TIGR02021 BchM-ChlM magnesium 70.4 35 0.00075 32.1 9.5 111 170-301 37-156 (219)
38 PRK11873 arsM arsenite S-adeno 70.0 39 0.00084 32.9 10.1 97 188-301 79-181 (272)
39 TIGR00452 methyltransferase, p 69.5 42 0.00091 34.3 10.4 107 177-302 112-224 (314)
40 PF13649 Methyltransf_25: Meth 69.2 11 0.00024 30.9 5.2 51 190-244 1-54 (101)
41 PRK05134 bifunctional 3-demeth 69.1 1E+02 0.0022 29.1 12.5 104 181-302 43-150 (233)
42 smart00138 MeTrc Methyltransfe 67.3 36 0.00079 33.5 9.3 48 184-231 97-146 (264)
43 PRK11705 cyclopropane fatty ac 65.7 71 0.0015 33.4 11.5 106 176-301 157-265 (383)
44 PLN02244 tocopherol O-methyltr 64.7 74 0.0016 32.5 11.2 94 186-300 118-220 (340)
45 TIGR02469 CbiT precorrin-6Y C5 63.7 82 0.0018 25.9 10.1 45 189-240 22-69 (124)
46 TIGR00537 hemK_rel_arch HemK-r 63.6 1.2E+02 0.0025 27.6 11.7 47 189-244 22-71 (179)
47 PRK08317 hypothetical protein; 63.1 1.3E+02 0.0027 27.8 13.5 109 178-304 11-126 (241)
48 PF13679 Methyltransf_32: Meth 63.0 17 0.00037 32.1 5.5 57 182-241 21-80 (141)
49 PRK10909 rsmD 16S rRNA m(2)G96 62.9 1.1E+02 0.0023 29.2 11.1 104 188-308 55-164 (199)
50 COG2227 UbiG 2-polyprenyl-3-me 62.7 22 0.00047 35.2 6.5 97 186-301 59-159 (243)
51 PRK15068 tRNA mo(5)U34 methylt 61.7 83 0.0018 32.0 10.9 106 178-302 114-225 (322)
52 PF01209 Ubie_methyltran: ubiE 58.9 40 0.00087 32.7 7.7 173 177-386 38-218 (233)
53 PRK00274 ksgA 16S ribosomal RN 58.8 51 0.0011 32.5 8.6 58 162-228 13-75 (272)
54 PRK04148 hypothetical protein; 58.3 28 0.00061 31.3 6.0 63 178-248 8-112 (134)
55 PRK09489 rsmC 16S ribosomal RN 57.9 1.3E+02 0.0027 31.1 11.5 113 175-302 185-302 (342)
56 PLN02490 MPBQ/MSBQ methyltrans 57.6 55 0.0012 33.9 8.8 97 186-301 113-213 (340)
57 smart00650 rADc Ribosomal RNA 57.4 1.3E+02 0.0029 27.0 10.5 44 176-228 3-46 (169)
58 TIGR02085 meth_trns_rumB 23S r 56.9 1E+02 0.0023 31.9 10.9 95 189-303 236-334 (374)
59 PLN02585 magnesium protoporphy 56.2 95 0.0021 31.7 10.2 95 186-301 144-248 (315)
60 PRK00121 trmB tRNA (guanine-N( 55.8 78 0.0017 29.7 8.9 105 186-301 40-154 (202)
61 cd02440 AdoMet_MTases S-adenos 53.7 95 0.0021 23.5 8.1 100 189-302 1-103 (107)
62 PRK06922 hypothetical protein; 52.4 59 0.0013 36.8 8.4 103 188-301 420-535 (677)
63 PRK04457 spermidine synthase; 52.3 1.4E+02 0.003 29.4 10.4 102 189-302 69-176 (262)
64 PRK03522 rumB 23S rRNA methylu 50.4 1.6E+02 0.0035 29.7 10.7 97 187-303 174-274 (315)
65 TIGR00755 ksgA dimethyladenosi 48.8 2E+02 0.0043 27.9 10.8 44 176-228 19-62 (253)
66 PF03848 TehB: Tellurite resis 47.0 2.4E+02 0.0052 26.9 10.6 106 176-301 20-131 (192)
67 PRK13168 rumA 23S rRNA m(5)U19 46.7 1.9E+02 0.0042 30.6 11.1 106 180-303 291-400 (443)
68 TIGR00091 tRNA (guanine-N(7)-) 46.5 1.2E+02 0.0025 28.2 8.5 108 187-303 17-132 (194)
69 TIGR03439 methyl_EasF probable 44.9 2.1E+02 0.0045 29.4 10.5 145 177-328 69-234 (319)
70 PRK11088 rrmA 23S rRNA methylt 44.9 1.1E+02 0.0024 30.0 8.4 83 148-236 49-131 (272)
71 PF13489 Methyltransf_23: Meth 44.6 1.3E+02 0.0028 25.9 8.0 40 184-232 20-59 (161)
72 COG2230 Cfa Cyclopropane fatty 44.5 2.3E+02 0.0049 28.8 10.5 113 171-300 57-173 (283)
73 COG2226 UbiE Methylase involve 42.8 3.4E+02 0.0074 26.7 14.0 185 164-385 28-221 (238)
74 PRK07580 Mg-protoporphyrin IX 42.1 1.9E+02 0.0042 26.9 9.3 34 186-228 63-96 (230)
75 PF00891 Methyltransf_2: O-met 41.6 2.2E+02 0.0048 27.0 9.8 112 176-308 90-205 (241)
76 PRK08287 cobalt-precorrin-6Y C 41.0 2.8E+02 0.0061 25.2 10.1 104 178-302 23-130 (187)
77 PLN02446 (5-phosphoribosyl)-5- 39.8 40 0.00086 33.7 4.3 27 183-210 55-81 (262)
78 TIGR00406 prmA ribosomal prote 37.7 3.7E+02 0.008 26.7 10.9 110 171-301 142-257 (288)
79 PRK13944 protein-L-isoaspartat 37.2 3.4E+02 0.0073 25.4 10.1 58 177-240 63-123 (205)
80 PF07521 RMMBL: RNA-metabolisi 36.5 70 0.0015 22.8 4.0 37 266-302 2-39 (43)
81 PRK07402 precorrin-6B methylas 35.9 3.5E+02 0.0076 24.8 12.3 116 169-303 23-142 (196)
82 PRK13255 thiopurine S-methyltr 34.6 3.1E+02 0.0067 26.3 9.5 47 187-242 38-84 (218)
83 PRK15001 SAM-dependent 23S rib 33.7 3.9E+02 0.0084 28.1 10.7 114 175-303 217-340 (378)
84 TIGR01983 UbiG ubiquinone bios 33.2 3.1E+02 0.0067 25.4 9.2 98 186-301 45-147 (224)
85 COG0357 GidB Predicted S-adeno 32.3 1.4E+02 0.0031 28.9 6.7 58 187-253 68-129 (215)
86 PF02527 GidB: rRNA small subu 32.3 76 0.0016 29.9 4.7 56 189-252 51-109 (184)
87 TIGR00479 rumA 23S rRNA (uraci 29.7 4E+02 0.0087 28.0 10.2 96 188-301 294-394 (431)
88 PTZ00338 dimethyladenosine tra 29.6 1.8E+02 0.004 29.3 7.3 64 177-249 27-93 (294)
89 TIGR00536 hemK_fam HemK family 29.4 1.2E+02 0.0025 30.2 5.8 50 188-244 116-170 (284)
90 TIGR00563 rsmB ribosomal RNA s 28.7 7E+02 0.015 26.2 11.8 67 173-246 225-294 (426)
91 PF00763 THF_DHG_CYH: Tetrahyd 28.3 1.3E+02 0.0028 26.0 5.2 43 204-247 19-67 (117)
92 PF15609 PRTase_2: Phosphoribo 27.7 2.6E+02 0.0056 26.8 7.4 64 183-247 119-187 (191)
93 TIGR01716 RGG_Cterm transcript 27.7 85 0.0018 29.3 4.3 55 76-130 126-181 (220)
94 TIGR03534 RF_mod_PrmC protein- 27.3 1.4E+02 0.0031 28.1 5.8 48 186-240 87-137 (251)
95 TIGR02129 hisA_euk phosphoribo 27.3 65 0.0014 32.1 3.5 24 183-210 50-73 (253)
96 TIGR03840 TMPT_Se_Te thiopurin 24.5 6.2E+02 0.013 24.1 10.7 46 188-242 36-81 (213)
97 PRK14968 putative methyltransf 23.8 2.1E+02 0.0045 25.5 6.0 32 188-228 25-56 (188)
98 PF04716 ETC_C1_NDUFA5: ETC co 23.4 1.6E+02 0.0034 22.6 4.2 39 319-360 8-46 (57)
99 PRK13978 ribose-5-phosphate is 22.8 87 0.0019 30.7 3.4 47 193-241 25-71 (228)
100 PHA03411 putative methyltransf 22.5 1.8E+02 0.0039 29.4 5.6 66 157-230 34-101 (279)
101 KOG1165 Casein kinase (serine/ 22.0 52 0.0011 34.5 1.7 14 183-196 163-176 (449)
102 PLN02232 ubiquinone biosynthes 22.0 5.7E+02 0.012 22.8 9.7 19 370-388 129-147 (160)
103 PRK14902 16S rRNA methyltransf 21.8 5E+02 0.011 27.5 9.2 86 175-270 239-327 (444)
104 PF05175 MTS: Methyltransferas 21.7 1.4E+02 0.0031 27.0 4.4 113 174-300 19-137 (170)
105 PRK00312 pcm protein-L-isoaspa 20.7 3.4E+02 0.0075 25.2 7.0 53 178-239 70-125 (212)
106 PRK13587 1-(5-phosphoribosyl)- 20.1 1.6E+02 0.0034 28.6 4.6 32 181-212 42-75 (234)
No 1
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=100.00 E-value=4.7e-109 Score=846.74 Aligned_cols=354 Identities=47% Similarity=0.778 Sum_probs=331.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCcchhHHHHHHHHHHHHhhhCCCCCCCCCccccccccchHHHHHH
Q 013903 77 LLGLLLQCAECVAMDNLDDATDLLPEISELSSPFVSSPERVGAYFAHALQARVVSSCLGTYSPLTTKSLTLSQSQKIFNA 156 (434)
Q Consensus 77 L~~LLl~CAeAV~~gd~~~A~~lL~~l~~~aSp~Gd~~qRla~yFa~AL~~Rl~~~~~g~~~~l~~~~~~~~~~~~~~~A 156 (434)
|++||++||+||+.||.+.|+.+|++|++++||+|||+||||+||++||.+|+.+++++.|.++.....+.....+...|
T Consensus 1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a 80 (374)
T PF03514_consen 1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA 80 (374)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999998888888775554333345678899
Q ss_pred HHHHHhcCCCccchhHhHhHHHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCC----hH----
Q 013903 157 LQSYNSICPLIKFSHFTANQAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSS----SE---- 228 (434)
Q Consensus 157 ~~~f~~~sP~~kfa~~tANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~----~~---- 228 (434)
|+.||+.|||+||+|||||||||||++|+++||||||||++|+|||+|||+||.|++|||+||||||+++ .+
T Consensus 81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~ 160 (374)
T PF03514_consen 81 YQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQE 160 (374)
T ss_pred HHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999983 22
Q ss_pred ---HHHHHHHHcCCceEEeee-ccCccccccccccCCCCCceEEEecc---cccccc---cCCChHHHHHHHHhcCCCEE
Q 013903 229 ---RLADFAMSLGLPFDFNPL-EGKIGNIIDVSQLGVRPGETIVVHWM---HHCLYD---ITGSDLGTLRMLTLLRPKLI 298 (434)
Q Consensus 229 ---rL~~fA~slgvpFeF~~V-~~~~e~l~~~~~L~~~~~EaLaVN~~---~h~l~~---~~~~~~~~L~~ir~L~P~vv 298 (434)
||.+||+++||||||++| ..+++++ ++++|++++||+|||||+ ||++.+ ..++++.||+.||+|+|+||
T Consensus 161 ~g~rL~~fA~~lgv~fef~~v~~~~~e~l-~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vv 239 (374)
T PF03514_consen 161 TGRRLAEFARSLGVPFEFHPVVVESLEDL-DPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVV 239 (374)
T ss_pred HHHHHHHHHHHcCccEEEEecccCchhhC-CHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEE
Confidence 999999999999999995 6789999 899999999999999985 444322 23468999999999999999
Q ss_pred EEEecCCCCCCC-hhHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHhhhhhhhHHhhCCCCcccccc-cccHHHHH
Q 013903 299 TIVEQDLSHGGS-FLGRFVEALHYYSALFDALGDGLGADSIERHTVEQQLFGCEIRNIVAVGGPKRTGEVK-VERWGEEL 376 (434)
Q Consensus 299 v~vE~ea~~n~~-F~~RF~eaL~yYsalFDsLea~l~~~~~eR~~vE~~~lg~eI~niVAcEG~~R~ER~e-~~~W~~rm 376 (434)
|++|+|+|||+| |++||.|||+||+++|||||+++|+++++|..+|+.+||++|+|||||||.+|+|||| +++|+.||
T Consensus 240 v~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~r~ 319 (374)
T PF03514_consen 240 VLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRRRM 319 (374)
T ss_pred EEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHHHH
Confidence 999999999996 9999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred hcCCCeeccCCChHHHHHHHHhccCCCCCcEEEEeCCEEEEEECCceEEEEEeee
Q 013903 377 KRVGFRPVSLSGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQ 431 (434)
Q Consensus 377 ~~AGF~~v~ls~~~~~qa~~ll~~~~~~gy~v~e~~~~L~LgWk~~pL~s~SaW~ 431 (434)
.+|||+++|+|++++.|||+||++|+++||+|++++|||+|||||+||+++||||
T Consensus 320 ~~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr 374 (374)
T PF03514_consen 320 RRAGFRPVPLSEFAVSQAKLLLRKFPGDGYTVEEDGGCLLLGWKGRPLVAASAWR 374 (374)
T ss_pred HhcCCeecCCCHHHHHHHHHHHhccCCCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence 9999999999999999999999999889999999999999999999999999997
No 2
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.16 E-value=0.014 Score=56.77 Aligned_cols=186 Identities=15% Similarity=0.161 Sum_probs=96.8
Q ss_pred HhcCCCccchhHhHhHHHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHH---HHHHHc
Q 013903 161 NSICPLIKFSHFTANQAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLA---DFAMSL 237 (434)
Q Consensus 161 ~~~sP~~kfa~~tANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~---~fA~sl 237 (434)
....|.+...|-.++..+-.-+. ..-+|+|+|.|.|.--.. |+.+- ..|..++|||+.+.+.|. +-++..
T Consensus 33 ~~~~p~y~~~~~~~~~~~~~~~~--~~~~vLDlGcGtG~~~~~----l~~~~-~~~~~~v~gvD~S~~ml~~A~~~~~~~ 105 (247)
T PRK15451 33 QRSVPGYSNIISMIGMLAERFVQ--PGTQVYDLGCSLGAATLS----VRRNI-HHDNCKIIAIDNSPAMIERCRRHIDAY 105 (247)
T ss_pred HhcCCChHHHHHHHHHHHHHhCC--CCCEEEEEcccCCHHHHH----HHHhc-CCCCCeEEEEeCCHHHHHHHHHHHHhc
Confidence 34567777777666654333232 234799999999974333 33321 124679999999887332 333334
Q ss_pred CC--ceEEeeeccCccccccccccCCCCCceEEEecccccccccCCChHHHHHHH-HhcCCCE-EEEEecCCCCCCChhH
Q 013903 238 GL--PFDFNPLEGKIGNIIDVSQLGVRPGETIVVHWMHHCLYDITGSDLGTLRML-TLLRPKL-ITIVEQDLSHGGSFLG 313 (434)
Q Consensus 238 gv--pFeF~~V~~~~e~l~~~~~L~~~~~EaLaVN~~~h~l~~~~~~~~~~L~~i-r~L~P~v-vv~vE~ea~~n~~F~~ 313 (434)
|. .++|. ..++.++ ...+.++++.|..+|.+.+ ..+..+|+.+ +.|+|.- ++++|.=...+.....
T Consensus 106 ~~~~~v~~~--~~d~~~~------~~~~~D~vv~~~~l~~l~~--~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~ 175 (247)
T PRK15451 106 KAPTPVDVI--EGDIRDI------AIENASMVVLNFTLQFLEP--SERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGE 175 (247)
T ss_pred CCCCCeEEE--eCChhhC------CCCCCCEEehhhHHHhCCH--HHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHH
Confidence 44 34443 3333333 1223456666654443332 2345666554 7889974 4566644333333444
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHhhhhhhhHHhhCCCCcccccc-cccHHHHHhcCCCeec
Q 013903 314 RFVEALHYYSALFDALGDGLGADSIERHTVEQQLFGCEIRNIVAVGGPKRTGEVK-VERWGEELKRVGFRPV 384 (434)
Q Consensus 314 RF~eaL~yYsalFDsLea~l~~~~~eR~~vE~~~lg~eI~niVAcEG~~R~ER~e-~~~W~~rm~~AGF~~v 384 (434)
.+.+..+.|. ... +-+ ...+++. ....+|++ ++. .++..++|+.|||..+
T Consensus 176 ~~~~~~~~~~-----~~~--g~s---~~ei~~~--~~~~~~~~---------~~~~~~~~~~~L~~aGF~~v 226 (247)
T PRK15451 176 LLFNMHHDFK-----RAN--GYS---ELEISQK--RSMLENVM---------LTDSVETHKARLHKAGFEHS 226 (247)
T ss_pred HHHHHHHHHH-----HHc--CCC---HHHHHHH--HHHHHhhc---------ccCCHHHHHHHHHHcCchhH
Confidence 4444332221 111 111 1122221 12233332 233 5678999999999975
No 3
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=95.08 E-value=1.5 Score=41.46 Aligned_cols=111 Identities=11% Similarity=0.096 Sum_probs=57.7
Q ss_pred HHHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHH---HHHHHHcCCceEEeeeccCccc
Q 013903 176 QAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERL---ADFAMSLGLPFDFNPLEGKIGN 252 (434)
Q Consensus 176 qAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL---~~fA~slgvpFeF~~V~~~~e~ 252 (434)
+.++..+.=...-+|+|+|.|.|.-. ..|+.+ .+|..++|||+.+.+.+ .+-++..+++ ....+..+.++
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~----~~la~~--~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~ 107 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWS----IALAEA--VGPEGHVIGLDFSENMLSVGRQKVKDAGLH-NVELVHGNAME 107 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHH----HHHHHH--hCCCCEEEEEECCHHHHHHHHHHHHhcCCC-ceEEEEechhc
Confidence 45666665344458999999999733 334333 12456899999887632 2222334443 22223232322
Q ss_pred cccccccCCCCCceEEEecccccccccCCChHHHHH-HHHhcCCCEEEEE
Q 013903 253 IIDVSQLGVRPGETIVVHWMHHCLYDITGSDLGTLR-MLTLLRPKLITIV 301 (434)
Q Consensus 253 l~~~~~L~~~~~EaLaVN~~~h~l~~~~~~~~~~L~-~ir~L~P~vvv~v 301 (434)
+ . +.-..=+.|+.+..+|-+ .....+|+ ..+.|+|.-.+++
T Consensus 108 ~-~---~~~~~fD~V~~~~~l~~~----~~~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 108 L-P---FDDNSFDYVTIGFGLRNV----PDYMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred C-C---CCCCCccEEEEecccccC----CCHHHHHHHHHHHcCcCeEEEE
Confidence 2 1 111122455555432212 22455665 5578899865554
No 4
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=94.82 E-value=0.54 Score=47.03 Aligned_cols=117 Identities=9% Similarity=0.033 Sum_probs=66.0
Q ss_pred HhHHHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH--HHHHHHHHcCCceEEeeeccCcc
Q 013903 174 ANQAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE--RLADFAMSLGLPFDFNPLEGKIG 251 (434)
Q Consensus 174 ANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~--rL~~fA~slgvpFeF~~V~~~~e 251 (434)
+.+.|++.+.-.+.-+|+|+|.|.|. +...++++. |.+++|+++.+.. ...+.++..|+.=.++.+..+..
T Consensus 137 ~~~~l~~~~~~~~~~~vlDiG~G~G~----~~~~~~~~~---p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~ 209 (306)
T TIGR02716 137 AIQLLLEEAKLDGVKKMIDVGGGIGD----ISAAMLKHF---PELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIY 209 (306)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCchhH----HHHHHHHHC---CCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCcc
Confidence 35678888775666799999999994 444555443 5689999986422 33456666776423333333222
Q ss_pred ccccccccCCCCCceEEEecccccccccCC-ChHHHHHHH-HhcCCCE-EEEEecCCC
Q 013903 252 NIIDVSQLGVRPGETIVVHWMHHCLYDITG-SDLGTLRML-TLLRPKL-ITIVEQDLS 306 (434)
Q Consensus 252 ~l~~~~~L~~~~~EaLaVN~~~h~l~~~~~-~~~~~L~~i-r~L~P~v-vv~vE~ea~ 306 (434)
+. .+...+++++..++| +... ....+|+.+ +.|+|.- ++++|.-.+
T Consensus 210 ~~------~~~~~D~v~~~~~lh---~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 210 KE------SYPEADAVLFCRILY---SANEQLSTIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred CC------CCCCCCEEEeEhhhh---cCChHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 11 112235554443323 2222 234567655 7899954 446665443
No 5
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=94.25 E-value=1.3 Score=42.56 Aligned_cols=101 Identities=13% Similarity=0.222 Sum_probs=56.2
Q ss_pred CeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHH---HHHHHcCC--ceEEeeeccCccccccccccC
Q 013903 186 DCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLA---DFAMSLGL--PFDFNPLEGKIGNIIDVSQLG 260 (434)
Q Consensus 186 ~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~---~fA~slgv--pFeF~~V~~~~e~l~~~~~L~ 260 (434)
..-+|+|+|.|.|. ++..|+.+-. .|..++|||+.+.+.|. +..+..+. +.+| +..++.++ .
T Consensus 53 ~~~~iLDlGcG~G~----~~~~l~~~~~-~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~--~~~d~~~~------~ 119 (239)
T TIGR00740 53 PDSNVYDLGCSRGA----ATLSARRNIN-QPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEI--LCNDIRHV------E 119 (239)
T ss_pred CCCEEEEecCCCCH----HHHHHHHhcC-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEE--EECChhhC------C
Confidence 34479999999995 4455554422 24689999999876332 22233332 3344 33333333 1
Q ss_pred CCCCceEEEecccccccccCCChHHHHHHH-HhcCCCEEEEE
Q 013903 261 VRPGETIVVHWMHHCLYDITGSDLGTLRML-TLLRPKLITIV 301 (434)
Q Consensus 261 ~~~~EaLaVN~~~h~l~~~~~~~~~~L~~i-r~L~P~vvv~v 301 (434)
..+..+++.+..+|.+.+ .....+|+.+ +.|+|.-.+++
T Consensus 120 ~~~~d~v~~~~~l~~~~~--~~~~~~l~~i~~~LkpgG~l~i 159 (239)
T TIGR00740 120 IKNASMVILNFTLQFLPP--EDRIALLTKIYEGLNPNGVLVL 159 (239)
T ss_pred CCCCCEEeeecchhhCCH--HHHHHHHHHHHHhcCCCeEEEE
Confidence 223446666654332322 2245666555 77899887765
No 6
>PRK06202 hypothetical protein; Provisional
Probab=91.81 E-value=3.6 Score=39.27 Aligned_cols=112 Identities=13% Similarity=0.087 Sum_probs=57.1
Q ss_pred HHHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHHHHHHH---cCCceEEeeeccCccc
Q 013903 176 QAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADFAMS---LGLPFDFNPLEGKIGN 252 (434)
Q Consensus 176 qAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~~fA~s---lgvpFeF~~V~~~~e~ 252 (434)
+.+...+...+...|+|+|.|.|. +...|..... ...|..+||||+.+.+.|....+. -|+.+.... .+.
T Consensus 50 ~~~~~~l~~~~~~~iLDlGcG~G~-~~~~L~~~~~--~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~----~~~ 122 (232)
T PRK06202 50 RLLRPALSADRPLTLLDIGCGGGD-LAIDLARWAR--RDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAV----SDE 122 (232)
T ss_pred HHHHHhcCCCCCcEEEEeccCCCH-HHHHHHHHHH--hCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEe----ccc
Confidence 333333343456789999999996 3332222221 123457999999998754333322 234443321 112
Q ss_pred cccccccCCCCCceEEEec-ccccccccCCChHHHHHHHHhcCCCEEEEE
Q 013903 253 IIDVSQLGVRPGETIVVHW-MHHCLYDITGSDLGTLRMLTLLRPKLITIV 301 (434)
Q Consensus 253 l~~~~~L~~~~~EaLaVN~-~~h~l~~~~~~~~~~L~~ir~L~P~vvv~v 301 (434)
+ .. .-..=++++.|. +||+ .+ .....+|+.+.++.-..+++.
T Consensus 123 l-~~---~~~~fD~V~~~~~lhh~-~d--~~~~~~l~~~~r~~~~~~~i~ 165 (232)
T PRK06202 123 L-VA---EGERFDVVTSNHFLHHL-DD--AEVVRLLADSAALARRLVLHN 165 (232)
T ss_pred c-cc---cCCCccEEEECCeeecC-Ch--HHHHHHHHHHHHhcCeeEEEe
Confidence 2 10 111235666664 4553 22 124567877765554555554
No 7
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=91.77 E-value=0.57 Score=41.67 Aligned_cols=101 Identities=26% Similarity=0.293 Sum_probs=59.2
Q ss_pred CeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH---HHHHHHHHcCCc-eEEeeeccCccccccccccCC
Q 013903 186 DCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE---RLADFAMSLGLP-FDFNPLEGKIGNIIDVSQLGV 261 (434)
Q Consensus 186 ~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~---rL~~fA~slgvp-FeF~~V~~~~e~l~~~~~L~~ 261 (434)
+..+|+|+|.|.|..=..|.+.+ .|..+||||+.+.+ ...+.++..|++ .+|.. .++.++ +.. +.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~------~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~--~d~~~l-~~~-~~- 71 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKEL------NPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQ--GDIEDL-PQE-LE- 71 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHS------TTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEE--SBTTCG-CGC-SS-
T ss_pred CCCEEEEecCcCcHHHHHHHHhc------CCCCEEEEEECcHHHHHHhhcccccccccccceEE--eehhcc-ccc-cC-
Confidence 46789999999997533333322 12456999999987 566677888987 55554 444444 211 22
Q ss_pred CCCceEEEecccccccccCCChHHHH-HHHHhcCCCEEEEE
Q 013903 262 RPGETIVVHWMHHCLYDITGSDLGTL-RMLTLLRPKLITIV 301 (434)
Q Consensus 262 ~~~EaLaVN~~~h~l~~~~~~~~~~L-~~ir~L~P~vvv~v 301 (434)
..=+.++.+..+|... ....+| ...+.|+|.-++++
T Consensus 72 ~~~D~I~~~~~l~~~~----~~~~~l~~~~~~lk~~G~~i~ 108 (152)
T PF13847_consen 72 EKFDIIISNGVLHHFP----DPEKVLKNIIRLLKPGGILII 108 (152)
T ss_dssp TTEEEEEEESTGGGTS----HHHHHHHHHHHHEEEEEEEEE
T ss_pred CCeeEEEEcCchhhcc----CHHHHHHHHHHHcCCCcEEEE
Confidence 2334555554332222 234455 55788898877765
No 8
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=90.94 E-value=1.6 Score=40.84 Aligned_cols=108 Identities=17% Similarity=0.164 Sum_probs=64.7
Q ss_pred hHhHHHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH---HHHHHHHHcCCceEEeeeccC
Q 013903 173 TANQAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE---RLADFAMSLGLPFDFNPLEGK 249 (434)
Q Consensus 173 tANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~---rL~~fA~slgvpFeF~~V~~~ 249 (434)
++...|++++.-.+.-+|+|+|.|.|.--. .|+.+ + .++|||+.+.+ .+.+.++..|++..+... .
T Consensus 17 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~a~----~la~~-g----~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~--d 85 (195)
T TIGR00477 17 TTHSAVREAVKTVAPCKTLDLGCGQGRNSL----YLSLA-G----YDVRAWDHNPASIASVLDMKARENLPLRTDAY--D 85 (195)
T ss_pred CchHHHHHHhccCCCCcEEEeCCCCCHHHH----HHHHC-C----CeEEEEECCHHHHHHHHHHHHHhCCCceeEec--c
Confidence 456688888875556799999999997433 33444 2 48999998876 555667777887544332 1
Q ss_pred ccccccccccCCCCCceEEEecccccccccCCChHHHHHHH-HhcCCCEE
Q 013903 250 IGNIIDVSQLGVRPGETIVVHWMHHCLYDITGSDLGTLRML-TLLRPKLI 298 (434)
Q Consensus 250 ~e~l~~~~~L~~~~~EaLaVN~~~h~l~~~~~~~~~~L~~i-r~L~P~vv 298 (434)
+... + +. ..=+.++.|.++|.+.. +.+..+++.+ +.|+|.-.
T Consensus 86 ~~~~-~---~~-~~fD~I~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~ 128 (195)
T TIGR00477 86 INAA-A---LN-EDYDFIFSTVVFMFLQA--GRVPEIIANMQAHTRPGGY 128 (195)
T ss_pred chhc-c---cc-CCCCEEEEecccccCCH--HHHHHHHHHHHHHhCCCcE
Confidence 2111 1 11 12245555544332221 3355677654 77899975
No 9
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=90.24 E-value=5 Score=38.92 Aligned_cols=107 Identities=17% Similarity=0.163 Sum_probs=63.5
Q ss_pred HHHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHHHHHHHcCCceEEeeeccCcccccc
Q 013903 176 QAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADFAMSLGLPFDFNPLEGKIGNIID 255 (434)
Q Consensus 176 qAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~~fA~slgvpFeF~~V~~~~e~l~~ 255 (434)
..+++.+.-...-+|+|+|.|.|. +...|+.+. |..++|||+.+...+ +.|+..++.|. ..+.+++ .
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~----~~~~l~~~~---p~~~v~gvD~s~~~~-~~a~~~~~~~~----~~d~~~~-~ 85 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGN----LTRYLARRW---PGAVIEALDSSPEMV-AAARERGVDAR----TGDVRDW-K 85 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCH----HHHHHHHHC---CCCEEEEEECCHHHH-HHHHhcCCcEE----EcChhhC-C
Confidence 356676665556789999999994 455666653 345899999887543 45565565542 1222222 1
Q ss_pred ccccCCCCCceEEEecccccccccCCChHHHHH-HHHhcCCCEEEEEec
Q 013903 256 VSQLGVRPGETIVVHWMHHCLYDITGSDLGTLR-MLTLLRPKLITIVEQ 303 (434)
Q Consensus 256 ~~~L~~~~~EaLaVN~~~h~l~~~~~~~~~~L~-~ir~L~P~vvv~vE~ 303 (434)
+ ...=+.|+.|..+|.+.+ ...+|+ ..+.|+|.-.+++..
T Consensus 86 ~----~~~fD~v~~~~~l~~~~d----~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 86 P----KPDTDVVVSNAALQWVPE----HADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred C----CCCceEEEEehhhhhCCC----HHHHHHHHHHhCCCCcEEEEEc
Confidence 1 112356666654332322 345554 557899997777653
No 10
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=88.70 E-value=4.7 Score=37.77 Aligned_cols=109 Identities=12% Similarity=0.109 Sum_probs=62.0
Q ss_pred HhHHHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH---HHHHHHHHcCCc-eEEeeeccC
Q 013903 174 ANQAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE---RLADFAMSLGLP-FDFNPLEGK 249 (434)
Q Consensus 174 ANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~---rL~~fA~slgvp-FeF~~V~~~ 249 (434)
+++.+++.+.....-+|+|+|.|.|. +.-.|+++ + .+||||+.+.+ ...+.++..|++ .++.. .+
T Consensus 18 ~~~~l~~~l~~~~~~~vLDiGcG~G~----~a~~La~~-g----~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~--~d 86 (197)
T PRK11207 18 THSEVLEAVKVVKPGKTLDLGCGNGR----NSLYLAAN-G----FDVTAWDKNPMSIANLERIKAAENLDNLHTAV--VD 86 (197)
T ss_pred ChHHHHHhcccCCCCcEEEECCCCCH----HHHHHHHC-C----CEEEEEeCCHHHHHHHHHHHHHcCCCcceEEe--cC
Confidence 45566666655555689999999997 23445554 2 38999998876 444555556664 33322 22
Q ss_pred ccccccccccCCCCCceEEEecccccccccCCChHHHHHH-HHhcCCCEEEE
Q 013903 250 IGNIIDVSQLGVRPGETIVVHWMHHCLYDITGSDLGTLRM-LTLLRPKLITI 300 (434)
Q Consensus 250 ~e~l~~~~~L~~~~~EaLaVN~~~h~l~~~~~~~~~~L~~-ir~L~P~vvv~ 300 (434)
+.++ + +. ..=+.++.|..+|.+. +..+..+++. .+.|+|.-.++
T Consensus 87 ~~~~-~---~~-~~fD~I~~~~~~~~~~--~~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 87 LNNL-T---FD-GEYDFILSTVVLMFLE--AKTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred hhhC-C---cC-CCcCEEEEecchhhCC--HHHHHHHHHHHHHHcCCCcEEE
Confidence 2222 1 11 1224555554433222 2345666654 47889998744
No 11
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=87.94 E-value=2 Score=42.72 Aligned_cols=136 Identities=15% Similarity=0.155 Sum_probs=73.3
Q ss_pred hhHhHhHHHHhhcC----CCCeeEEEEcccCCcc-ccHHHHHHHhcCCCCCceEEEEeecCChHHHHHHHHHcCCceEEe
Q 013903 170 SHFTANQAIFQALD----GADCVHIIDLDIMQGL-QWPGLFHILVSRSKKIRSMRITGFGSSSERLADFAMSLGLPFDFN 244 (434)
Q Consensus 170 a~~tANqAILEA~~----g~~~VHIIDfgI~~G~-QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~~fA~slgvpFeF~ 244 (434)
+++++-..||+.++ +-+.-+|+|||-|-|. =|.. .+.+ +-...+|.|+.+... .++|+.+=-.+ .
T Consensus 13 ~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa-~~~~------~~~~~~~~vd~s~~~-~~l~~~l~~~~--~ 82 (274)
T PF09243_consen 13 ATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAA-REVW------PSLKEYTCVDRSPEM-LELAKRLLRAG--P 82 (274)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHH-HHHh------cCceeeeeecCCHHH-HHHHHHHHhcc--c
Confidence 56667777777665 3355699999999886 3532 2222 135789999987651 22222221010 0
Q ss_pred eecc-Cc-cccccccccCCCCCceEEEecccccccccCCChHHHHHHH-HhcCCCEEEEEecCCCCCCChhHHHHHHH
Q 013903 245 PLEG-KI-GNIIDVSQLGVRPGETIVVHWMHHCLYDITGSDLGTLRML-TLLRPKLITIVEQDLSHGGSFLGRFVEAL 319 (434)
Q Consensus 245 ~V~~-~~-e~l~~~~~L~~~~~EaLaVN~~~h~l~~~~~~~~~~L~~i-r~L~P~vvv~vE~ea~~n~~F~~RF~eaL 319 (434)
.... .+ ..+ ..+...+.+.+.|++..++.=|.. ..+..+++.+ ..++| ++|+||+..-.+...+.+.++.|
T Consensus 83 ~~~~~~~~~~~-~~~~~~~~~~DLvi~s~~L~EL~~--~~r~~lv~~LW~~~~~-~LVlVEpGt~~Gf~~i~~aR~~l 156 (274)
T PF09243_consen 83 NNRNAEWRRVL-YRDFLPFPPDDLVIASYVLNELPS--AARAELVRSLWNKTAP-VLVLVEPGTPAGFRRIAEARDQL 156 (274)
T ss_pred ccccchhhhhh-hcccccCCCCcEEEEehhhhcCCc--hHHHHHHHHHHHhccC-cEEEEcCCChHHHHHHHHHHHHH
Confidence 0000 00 011 111223334455555432211222 4567788777 44555 88899987766656777777776
No 12
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=87.41 E-value=24 Score=32.59 Aligned_cols=116 Identities=16% Similarity=0.128 Sum_probs=60.4
Q ss_pred hHhHHHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHHHHHHHcC--CceEEeeeccCc
Q 013903 173 TANQAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADFAMSLG--LPFDFNPLEGKI 250 (434)
Q Consensus 173 tANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~~fA~slg--vpFeF~~V~~~~ 250 (434)
..-+.+++.+.......|+|+|.+.|. +...++.+- |+..++|+++.+...+....+.++ -...|. ..+.
T Consensus 26 ~~~~~~~~~~~~~~~~~vldiG~G~G~----~~~~~~~~~--~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~--~~d~ 97 (223)
T TIGR01934 26 LWRRRAVKLIGVFKGQKVLDVACGTGD----LAIELAKSA--PDRGKVTGVDFSSEMLEVAKKKSELPLNIEFI--QADA 97 (223)
T ss_pred HHHHHHHHHhccCCCCeEEEeCCCCCh----hHHHHHHhc--CCCceEEEEECCHHHHHHHHHHhccCCCceEE--ecch
Confidence 334556666655567899999999886 233344332 334789999988764444333333 123333 2223
Q ss_pred cccccccccCCCCCceEEEecccccccccCCChHHHHH-HHHhcCCCEEEE-EecC
Q 013903 251 GNIIDVSQLGVRPGETIVVHWMHHCLYDITGSDLGTLR-MLTLLRPKLITI-VEQD 304 (434)
Q Consensus 251 e~l~~~~~L~~~~~EaLaVN~~~h~l~~~~~~~~~~L~-~ir~L~P~vvv~-vE~e 304 (434)
.++ . +...+=+.++.+...|.. .....+|+ ..+.|+|.-.++ ++..
T Consensus 98 ~~~-~---~~~~~~D~i~~~~~~~~~----~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 98 EAL-P---FEDNSFDAVTIAFGLRNV----TDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred hcC-C---CCCCcEEEEEEeeeeCCc----ccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 332 1 111112344444332212 23455654 456778887665 4443
No 13
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=87.15 E-value=4.9 Score=42.68 Aligned_cols=109 Identities=13% Similarity=0.135 Sum_probs=58.7
Q ss_pred HHHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHHHHHHHc-CC--ceEEeeeccCccc
Q 013903 176 QAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADFAMSL-GL--PFDFNPLEGKIGN 252 (434)
Q Consensus 176 qAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~~fA~sl-gv--pFeF~~V~~~~e~ 252 (434)
..|++.+.....-+|+|+|.|.|.-- ..|+.+. -++|||+.+.+.+.. |+.. +. ..+|.. .+..+
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~----~~la~~~-----~~v~giD~s~~~l~~-a~~~~~~~~~i~~~~--~d~~~ 94 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFT----GELAKKA-----GQVIALDFIESVIKK-NESINGHYKNVKFMC--ADVTS 94 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHH----HHHHhhC-----CEEEEEeCCHHHHHH-HHHHhccCCceEEEE--ecccc
Confidence 45666665444458999999999544 4455442 178999988875543 3322 21 223322 22211
Q ss_pred cccccccCCCC--CceEEEecccccccccCCChHHHHHHH-HhcCCCEEEEEe
Q 013903 253 IIDVSQLGVRP--GETIVVHWMHHCLYDITGSDLGTLRML-TLLRPKLITIVE 302 (434)
Q Consensus 253 l~~~~~L~~~~--~EaLaVN~~~h~l~~~~~~~~~~L~~i-r~L~P~vvv~vE 302 (434)
. .+...+ =+.|+.|..+|.+.+ .....+|..+ +-|+|.-.++..
T Consensus 95 ~----~~~~~~~~fD~I~~~~~l~~l~~--~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 95 P----DLNISDGSVDLIFSNWLLMYLSD--KEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred c----ccCCCCCCEEEEehhhhHHhCCH--HHHHHHHHHHHHhcCCCeEEEEE
Confidence 1 111212 246666654332322 2246677655 558999877663
No 14
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=87.11 E-value=16 Score=35.91 Aligned_cols=124 Identities=17% Similarity=0.180 Sum_probs=65.4
Q ss_pred HhHHHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHHHHHHHcC-------CceEEeee
Q 013903 174 ANQAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADFAMSLG-------LPFDFNPL 246 (434)
Q Consensus 174 ANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~~fA~slg-------vpFeF~~V 246 (434)
-...+++.+.-...-+|+|+|.|.|. +...|+.+. +|.-+||||+.+.+.|....+..+ -..+|.
T Consensus 61 ~r~~~~~~~~~~~~~~VLDlGcGtG~----~~~~la~~~--~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~-- 132 (261)
T PLN02233 61 WKRMAVSWSGAKMGDRVLDLCCGSGD----LAFLLSEKV--GSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWI-- 132 (261)
T ss_pred HHHHHHHHhCCCCCCEEEEECCcCCH----HHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEE--
Confidence 34444444443445689999999997 334455442 234589999999885554433321 123332
Q ss_pred ccCccccccccccCCCCC--ceEEEecccccccccCCChHHHHH-HHHhcCCCEE-EEEecCCCCCCChhHHHH
Q 013903 247 EGKIGNIIDVSQLGVRPG--ETIVVHWMHHCLYDITGSDLGTLR-MLTLLRPKLI-TIVEQDLSHGGSFLGRFV 316 (434)
Q Consensus 247 ~~~~e~l~~~~~L~~~~~--EaLaVN~~~h~l~~~~~~~~~~L~-~ir~L~P~vv-v~vE~ea~~n~~F~~RF~ 316 (434)
..+.+++ ...++ +++..+..+|.+ + +...+|+ ..|-|+|.-. +++|-.. .+.+|...+.
T Consensus 133 ~~d~~~l------p~~~~sfD~V~~~~~l~~~---~-d~~~~l~ei~rvLkpGG~l~i~d~~~-~~~~~~~~~~ 195 (261)
T PLN02233 133 EGDATDL------PFDDCYFDAITMGYGLRNV---V-DRLKAMQEMYRVLKPGSRVSILDFNK-STQPFTTSMQ 195 (261)
T ss_pred EcccccC------CCCCCCEeEEEEecccccC---C-CHHHHHHHHHHHcCcCcEEEEEECCC-CCcHHHHHHH
Confidence 2223333 22222 456555443322 2 2455554 5588999854 4444432 2234655543
No 15
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=86.75 E-value=4.8 Score=39.99 Aligned_cols=106 Identities=13% Similarity=0.072 Sum_probs=60.6
Q ss_pred HHHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH---HHHHHHHHcCCceEEeeeccCccc
Q 013903 176 QAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE---RLADFAMSLGLPFDFNPLEGKIGN 252 (434)
Q Consensus 176 qAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~---rL~~fA~slgvpFeF~~V~~~~e~ 252 (434)
+.+++++.--+.-+|+|+|.|.|. +...|+.+ + .++|||+.+.. .+.+.|+..|+++++... ++.+
T Consensus 110 ~~~~~~~~~~~~~~vLDlGcG~G~----~~~~la~~-g----~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~--D~~~ 178 (287)
T PRK12335 110 SEVLEAVQTVKPGKALDLGCGQGR----NSLYLALL-G----FDVTAVDINQQSLENLQEIAEKENLNIRTGLY--DINS 178 (287)
T ss_pred HHHHHHhhccCCCCEEEeCCCCCH----HHHHHHHC-C----CEEEEEECCHHHHHHHHHHHHHcCCceEEEEe--chhc
Confidence 344554432222389999999997 33445554 2 58999998876 667777888887666432 2222
Q ss_pred cccccccCCCCCceEEEecccccccccCCChHHHHHH-HHhcCCCEEE
Q 013903 253 IIDVSQLGVRPGETIVVHWMHHCLYDITGSDLGTLRM-LTLLRPKLIT 299 (434)
Q Consensus 253 l~~~~~L~~~~~EaLaVN~~~h~l~~~~~~~~~~L~~-ir~L~P~vvv 299 (434)
. .+. ..=+.++.+..+|.+. +.....+|+. .+.|+|.-+.
T Consensus 179 ~----~~~-~~fD~I~~~~vl~~l~--~~~~~~~l~~~~~~LkpgG~~ 219 (287)
T PRK12335 179 A----SIQ-EEYDFILSTVVLMFLN--RERIPAIIKNMQEHTNPGGYN 219 (287)
T ss_pred c----ccc-CCccEEEEcchhhhCC--HHHHHHHHHHHHHhcCCCcEE
Confidence 1 110 1124555554433232 1235567755 4788997763
No 16
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=85.79 E-value=7.1 Score=36.46 Aligned_cols=100 Identities=17% Similarity=0.147 Sum_probs=54.2
Q ss_pred CeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHHHHHHHcCCceEEeeeccCccccccccccCCCCCc
Q 013903 186 DCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADFAMSLGLPFDFNPLEGKIGNIIDVSQLGVRPGE 265 (434)
Q Consensus 186 ~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~~fA~slgvpFeF~~V~~~~e~l~~~~~L~~~~~E 265 (434)
+..+|+|+|.|.|.-. ..|+.+ + |..++|+++.+.+.+....+.++-..+| +..++++. . +.-..-+
T Consensus 34 ~~~~vLDlG~G~G~~~----~~l~~~--~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~--~~~d~~~~-~---~~~~~fD 100 (240)
T TIGR02072 34 IPASVLDIGCGTGYLT----RALLKR--F-PQAEFIALDISAGMLAQAKTKLSENVQF--ICGDAEKL-P---LEDSSFD 100 (240)
T ss_pred CCCeEEEECCCccHHH----HHHHHh--C-CCCcEEEEeChHHHHHHHHHhcCCCCeE--EecchhhC-C---CCCCcee
Confidence 3468999999999633 333333 1 4567999998877554444444322222 33333332 1 1111224
Q ss_pred eEEEecccccccccCCChHHHHHHH-HhcCCCEEEEEe
Q 013903 266 TIVVHWMHHCLYDITGSDLGTLRML-TLLRPKLITIVE 302 (434)
Q Consensus 266 aLaVN~~~h~l~~~~~~~~~~L~~i-r~L~P~vvv~vE 302 (434)
+++.+..+|.. .+...+|..+ +.|+|.-+++..
T Consensus 101 ~vi~~~~l~~~----~~~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 101 LIVSNLALQWC----DDLSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred EEEEhhhhhhc----cCHHHHHHHHHHHcCCCcEEEEE
Confidence 55555433322 2345666655 668998777664
No 17
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=85.46 E-value=14 Score=35.54 Aligned_cols=111 Identities=23% Similarity=0.219 Sum_probs=62.7
Q ss_pred HhHHHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHHHHHHHcCCceEEeeeccCcccc
Q 013903 174 ANQAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADFAMSLGLPFDFNPLEGKIGNI 253 (434)
Q Consensus 174 ANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~~fA~slgvpFeF~~V~~~~e~l 253 (434)
-+..+++.+.-.+.-+|+|+|.|.|. +...|+.+. |..++|||+.+.+.+. .|+...-..+|.. .+..++
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~----~~~~la~~~---~~~~v~gvD~s~~~i~-~a~~~~~~~~~~~--~d~~~~ 88 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGN----STELLVERW---PAARITGIDSSPAMLA-EARSRLPDCQFVE--ADIASW 88 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCH----HHHHHHHHC---CCCEEEEEECCHHHHH-HHHHhCCCCeEEE--Cchhcc
Confidence 45567777765556789999999993 345566553 3458999998876443 3333211233332 222222
Q ss_pred ccccccCCCCCceEEEecccccccccCCChHHHH-HHHHhcCCCEEEEEec
Q 013903 254 IDVSQLGVRPGETIVVHWMHHCLYDITGSDLGTL-RMLTLLRPKLITIVEQ 303 (434)
Q Consensus 254 ~~~~~L~~~~~EaLaVN~~~h~l~~~~~~~~~~L-~~ir~L~P~vvv~vE~ 303 (434)
.+. .+=+.++.|..+|.+. + ...+| +..+.|+|.-.+++..
T Consensus 89 -~~~----~~fD~v~~~~~l~~~~---d-~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 89 -QPP----QALDLIFANASLQWLP---D-HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred -CCC----CCccEEEEccChhhCC---C-HHHHHHHHHHhcCCCcEEEEEC
Confidence 111 1224566664433232 2 34455 4558889998887764
No 18
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=85.45 E-value=32 Score=32.13 Aligned_cols=108 Identities=16% Similarity=0.102 Sum_probs=54.4
Q ss_pred HHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHHHH---HHHc--CCceEEeeeccCccc
Q 013903 178 IFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADF---AMSL--GLPFDFNPLEGKIGN 252 (434)
Q Consensus 178 ILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~~f---A~sl--gvpFeF~~V~~~~e~ 252 (434)
+++.+.-....+|+|+|.+.|. +...++.+ +|+..++|+++.+...+... +... ..+..|.. .+..+
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~----~~~~l~~~--~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~--~d~~~ 114 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGD----LAIALAKA--VGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQ--GDAEA 114 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCH----HHHHHHHH--cCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEe--ccccc
Confidence 4444443345789999999986 22333332 13478999999887633322 2221 22333332 22222
Q ss_pred cccccccCCCCCceEEEecccccccccCCChHHHHHH-HHhcCCCEEEEE
Q 013903 253 IIDVSQLGVRPGETIVVHWMHHCLYDITGSDLGTLRM-LTLLRPKLITIV 301 (434)
Q Consensus 253 l~~~~~L~~~~~EaLaVN~~~h~l~~~~~~~~~~L~~-ir~L~P~vvv~v 301 (434)
+ . +....-+.++.+..+|.. .....+|+. .+.|+|.-.+++
T Consensus 115 ~-~---~~~~~~D~I~~~~~l~~~----~~~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 115 L-P---FPDNSFDAVTIAFGLRNV----PDIDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred C-C---CCCCCccEEEEecccccC----CCHHHHHHHHHHhccCCcEEEE
Confidence 2 0 111122455554333322 234566654 467888875543
No 19
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=83.77 E-value=23 Score=33.25 Aligned_cols=93 Identities=18% Similarity=0.244 Sum_probs=57.3
Q ss_pred eEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH---HHHHHHHHcCCc-eEEeeeccCccccccccccCCCC
Q 013903 188 VHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE---RLADFAMSLGLP-FDFNPLEGKIGNIIDVSQLGVRP 263 (434)
Q Consensus 188 VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~---rL~~fA~slgvp-FeF~~V~~~~e~l~~~~~L~~~~ 263 (434)
-.|+|+|.|.|.. ++. ++.+. |..++|+|+.+.+ ...+.++..|++ ++| +..+.+++ .. -.+
T Consensus 47 ~~VLDiGcGtG~~--al~--la~~~---~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~--~~~d~~~~-~~----~~~ 112 (187)
T PRK00107 47 ERVLDVGSGAGFP--GIP--LAIAR---PELKVTLVDSLGKKIAFLREVAAELGLKNVTV--VHGRAEEF-GQ----EEK 112 (187)
T ss_pred CeEEEEcCCCCHH--HHH--HHHHC---CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEE--EeccHhhC-CC----CCC
Confidence 4689999999843 222 22211 3459999999876 556677778875 444 33334443 11 123
Q ss_pred CceEEEecccccccccCCChHHHHHH-HHhcCCCEEEEEe
Q 013903 264 GETIVVHWMHHCLYDITGSDLGTLRM-LTLLRPKLITIVE 302 (434)
Q Consensus 264 ~EaLaVN~~~h~l~~~~~~~~~~L~~-ir~L~P~vvv~vE 302 (434)
-+.++.|.+ .....+++. .+.|+|.-.+++.
T Consensus 113 fDlV~~~~~--------~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 113 FDVVTSRAV--------ASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred ccEEEEccc--------cCHHHHHHHHHHhcCCCeEEEEE
Confidence 456666543 234667765 4889999888876
No 20
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=82.51 E-value=13 Score=34.58 Aligned_cols=94 Identities=17% Similarity=0.215 Sum_probs=54.7
Q ss_pred eEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH---HHHHHHHHcCCceEEeeeccCccccccccccCCCCC
Q 013903 188 VHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE---RLADFAMSLGLPFDFNPLEGKIGNIIDVSQLGVRPG 264 (434)
Q Consensus 188 VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~---rL~~fA~slgvpFeF~~V~~~~e~l~~~~~L~~~~~ 264 (434)
-+|+|+|.|.|.- ++.=+.. . |..++|||+.+.+ .+.+.++..|++ .+..+..+.+++ .. ..+=
T Consensus 44 ~~vLDiGcGtG~~--s~~la~~-~----~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~-~~----~~~f 110 (181)
T TIGR00138 44 KKVIDIGSGAGFP--GIPLAIA-R----PELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDF-QH----EEQF 110 (181)
T ss_pred CeEEEecCCCCcc--HHHHHHH-C----CCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhc-cc----cCCc
Confidence 4899999999942 2221221 1 3468999999876 455666777874 234444444443 11 1122
Q ss_pred ceEEEecccccccccCCChHHHHHHH-HhcCCCEEEEEe
Q 013903 265 ETIVVHWMHHCLYDITGSDLGTLRML-TLLRPKLITIVE 302 (434)
Q Consensus 265 EaLaVN~~~h~l~~~~~~~~~~L~~i-r~L~P~vvv~vE 302 (434)
+.++.|.+++ ...++..+ +-|+|.-.+++.
T Consensus 111 D~I~s~~~~~--------~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 111 DVITSRALAS--------LNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred cEEEehhhhC--------HHHHHHHHHHhcCCCCEEEEE
Confidence 4665555221 34556654 558999888876
No 21
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=81.44 E-value=12 Score=36.35 Aligned_cols=108 Identities=15% Similarity=0.117 Sum_probs=59.7
Q ss_pred HHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHH---HHHHHHHcCCceEEeeeccCcccc
Q 013903 177 AIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSER---LADFAMSLGLPFDFNPLEGKIGNI 253 (434)
Q Consensus 177 AILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~r---L~~fA~slgvpFeF~~V~~~~e~l 253 (434)
.|++.+. .+.-+|+|+|.|.|. +...|+.+ + .++|||+.+.+. ..+.++..|+.-....+..+..++
T Consensus 36 ~~l~~l~-~~~~~vLDiGcG~G~----~a~~la~~-g----~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l 105 (255)
T PRK11036 36 RLLAELP-PRPLRVLDAGGGEGQ----TAIKLAEL-G----HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDI 105 (255)
T ss_pred HHHHhcC-CCCCEEEEeCCCchH----HHHHHHHc-C----CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHH
Confidence 4666665 344699999999994 45556655 2 489999998873 334455566543333333333333
Q ss_pred ccccccCCCCCceEEEecccccccccCCChHHHH-HHHHhcCCCEEEEE
Q 013903 254 IDVSQLGVRPGETIVVHWMHHCLYDITGSDLGTL-RMLTLLRPKLITIV 301 (434)
Q Consensus 254 ~~~~~L~~~~~EaLaVN~~~h~l~~~~~~~~~~L-~~ir~L~P~vvv~v 301 (434)
.+ +.-..=++++.+..+|.+ .++ ..+| ...+-|+|.-.+++
T Consensus 106 -~~--~~~~~fD~V~~~~vl~~~---~~~-~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 106 -AQ--HLETPVDLILFHAVLEWV---ADP-KSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred -hh--hcCCCCCEEEehhHHHhh---CCH-HHHHHHHHHHcCCCeEEEE
Confidence 11 111122455444332222 233 4455 45578899988764
No 22
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=80.23 E-value=26 Score=35.85 Aligned_cols=96 Identities=16% Similarity=0.187 Sum_probs=51.9
Q ss_pred eeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHHHHHHH----cCC--ceEEeeeccCccccccccccC
Q 013903 187 CVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADFAMS----LGL--PFDFNPLEGKIGNIIDVSQLG 260 (434)
Q Consensus 187 ~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~~fA~s----lgv--pFeF~~V~~~~e~l~~~~~L~ 260 (434)
.-.|+|+|.|.|. +...|+.+ + .++|||+.+.+.+ ++|+. .++ ..+|.. .+.+++. .. .
T Consensus 132 g~~ILDIGCG~G~----~s~~La~~-g----~~V~GID~s~~~i-~~Ar~~~~~~~~~~~i~~~~--~dae~l~-~~--~ 196 (322)
T PLN02396 132 GLKFIDIGCGGGL----LSEPLARM-G----ATVTGVDAVDKNV-KIARLHADMDPVTSTIEYLC--TTAEKLA-DE--G 196 (322)
T ss_pred CCEEEEeeCCCCH----HHHHHHHc-C----CEEEEEeCCHHHH-HHHHHHHHhcCcccceeEEe--cCHHHhh-hc--c
Confidence 3479999999997 44566643 3 4899999887633 23322 122 233332 2233331 10 0
Q ss_pred CCCCceEEEecccccccccCCChHHHHHHH-HhcCCCEEEEEe
Q 013903 261 VRPGETIVVHWMHHCLYDITGSDLGTLRML-TLLRPKLITIVE 302 (434)
Q Consensus 261 ~~~~EaLaVN~~~h~l~~~~~~~~~~L~~i-r~L~P~vvv~vE 302 (434)
-.-|=+++++.++|+ . +...||+.+ +-|+|.-.+++.
T Consensus 197 ~~FD~Vi~~~vLeHv-~----d~~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 197 RKFDAVLSLEVIEHV-A----NPAEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred CCCCEEEEhhHHHhc-C----CHHHHHHHHHHHcCCCcEEEEE
Confidence 011223333445552 2 246677665 567998888764
No 23
>PRK05785 hypothetical protein; Provisional
Probab=78.58 E-value=40 Score=32.34 Aligned_cols=91 Identities=9% Similarity=0.076 Sum_probs=49.8
Q ss_pred eeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHHHHHHHcCCceEEeeeccCccccccccccCCCCC--
Q 013903 187 CVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADFAMSLGLPFDFNPLEGKIGNIIDVSQLGVRPG-- 264 (434)
Q Consensus 187 ~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~~fA~slgvpFeF~~V~~~~e~l~~~~~L~~~~~-- 264 (434)
.-.|+|+|.|.|.-. ..|+.+.+ .++|||+.+.+.|....+. + + + +..+.+++ ...++
T Consensus 52 ~~~VLDlGcGtG~~~----~~l~~~~~----~~v~gvD~S~~Ml~~a~~~-~-~--~--~~~d~~~l------p~~d~sf 111 (226)
T PRK05785 52 PKKVLDVAAGKGELS----YHFKKVFK----YYVVALDYAENMLKMNLVA-D-D--K--VVGSFEAL------PFRDKSF 111 (226)
T ss_pred CCeEEEEcCCCCHHH----HHHHHhcC----CEEEEECCCHHHHHHHHhc-c-c--e--EEechhhC------CCCCCCE
Confidence 347999999999543 34444432 4899999988766543332 1 1 1 22222222 23333
Q ss_pred ceEEEecccccccccCCChHHHHHHH-HhcCCCEEEEEe
Q 013903 265 ETIVVHWMHHCLYDITGSDLGTLRML-TLLRPKLITIVE 302 (434)
Q Consensus 265 EaLaVN~~~h~l~~~~~~~~~~L~~i-r~L~P~vvv~vE 302 (434)
+++..++.+|.. .+.+.+|+.+ |-|+|.++ ++|
T Consensus 112 D~v~~~~~l~~~----~d~~~~l~e~~RvLkp~~~-ile 145 (226)
T PRK05785 112 DVVMSSFALHAS----DNIEKVIAEFTRVSRKQVG-FIA 145 (226)
T ss_pred EEEEecChhhcc----CCHHHHHHHHHHHhcCceE-EEE
Confidence 456555543322 2345566544 67889543 444
No 24
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=78.57 E-value=7.9 Score=31.84 Aligned_cols=99 Identities=21% Similarity=0.260 Sum_probs=52.5
Q ss_pred EEEEcccCCccccHHHHHHHhc-CCCCCceEEEEeecCChHHH---HHHHHHcC--CceEEeeeccCccccccccccCCC
Q 013903 189 HIIDLDIMQGLQWPGLFHILVS-RSKKIRSMRITGFGSSSERL---ADFAMSLG--LPFDFNPLEGKIGNIIDVSQLGVR 262 (434)
Q Consensus 189 HIIDfgI~~G~QWpsLiqaLa~-R~~gPP~LRITgI~~~~~rL---~~fA~slg--vpFeF~~V~~~~e~l~~~~~L~~~ 262 (434)
+|+|+|.+.|.- ...|+. ++ ..++|||+.+.+.+ .+-+...+ -..+|.. .++ .. ..+ ...
T Consensus 4 ~vLDlGcG~G~~----~~~l~~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~--~d~-~~-~~~--~~~ 69 (112)
T PF12847_consen 4 RVLDLGCGTGRL----SIALARLFP----GARVVGVDISPEMLEIARERAAEEGLSDRITFVQ--GDA-EF-DPD--FLE 69 (112)
T ss_dssp EEEEETTTTSHH----HHHHHHHHT----TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEE--SCC-HG-GTT--TSS
T ss_pred EEEEEcCcCCHH----HHHHHhcCC----CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEE--Ccc-cc-Ccc--cCC
Confidence 689999999864 333433 23 46899999988733 23332223 4444443 223 11 011 011
Q ss_pred CCceEEEec-ccccccccCCChHHHHHHH-HhcCCCEEEEEe
Q 013903 263 PGETIVVHW-MHHCLYDITGSDLGTLRML-TLLRPKLITIVE 302 (434)
Q Consensus 263 ~~EaLaVN~-~~h~l~~~~~~~~~~L~~i-r~L~P~vvv~vE 302 (434)
+=++++.+. ..+.+... .....+|+.+ +.|+|.-.++++
T Consensus 70 ~~D~v~~~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 70 PFDLVICSGFTLHFLLPL-DERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp CEEEEEECSGSGGGCCHH-HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCEEEECCCccccccch-hHHHHHHHHHHHhcCCCcEEEEE
Confidence 224555555 22212221 3456777655 688998888765
No 25
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=77.86 E-value=35 Score=31.54 Aligned_cols=54 Identities=17% Similarity=0.314 Sum_probs=33.8
Q ss_pred HHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHHHHHHHcCCce
Q 013903 177 AIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADFAMSLGLPF 241 (434)
Q Consensus 177 AILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~~fA~slgvpF 241 (434)
.|.+.+... -+|+|+|.|.|. +...|+.+.+ .+++||+.+.+.+.. |+.-|+.|
T Consensus 6 ~i~~~i~~~--~~iLDiGcG~G~----~~~~l~~~~~----~~~~giD~s~~~i~~-a~~~~~~~ 59 (194)
T TIGR02081 6 SILNLIPPG--SRVLDLGCGDGE----LLALLRDEKQ----VRGYGIEIDQDGVLA-CVARGVNV 59 (194)
T ss_pred HHHHhcCCC--CEEEEeCCCCCH----HHHHHHhccC----CcEEEEeCCHHHHHH-HHHcCCeE
Confidence 455555432 379999999995 5566665532 356999988765544 34446544
No 26
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=76.63 E-value=14 Score=36.35 Aligned_cols=109 Identities=20% Similarity=0.138 Sum_probs=69.4
Q ss_pred hhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHHHHHHHcCCceEEeeeccCcccccccccc
Q 013903 180 QALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADFAMSLGLPFDFNPLEGKIGNIIDVSQL 259 (434)
Q Consensus 180 EA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~~fA~slgvpFeF~~V~~~~e~l~~~~~L 259 (434)
.-+.-+.--.|+|+|.|-|.+=- -|+.|- |--.||||+++.+.|.+-|+ .....+|..- |....
T Consensus 24 a~Vp~~~~~~v~DLGCGpGnsTe----lL~~Rw---P~A~i~GiDsS~~Mla~Aa~-rlp~~~f~~a--------Dl~~w 87 (257)
T COG4106 24 ARVPLERPRRVVDLGCGPGNSTE----LLARRW---PDAVITGIDSSPAMLAKAAQ-RLPDATFEEA--------DLRTW 87 (257)
T ss_pred hhCCccccceeeecCCCCCHHHH----HHHHhC---CCCeEeeccCCHHHHHHHHH-hCCCCceecc--------cHhhc
Confidence 33444556689999999998744 344442 45689999999999988755 4455555421 12222
Q ss_pred CC-CCCceEEEecccccccccCCChHHHHHHHHhcCCCEEEEEecCCCC
Q 013903 260 GV-RPGETIVVHWMHHCLYDITGSDLGTLRMLTLLRPKLITIVEQDLSH 307 (434)
Q Consensus 260 ~~-~~~EaLaVN~~~h~l~~~~~~~~~~L~~ir~L~P~vvv~vE~ea~~ 307 (434)
+- .+-..|.-|..+|-|.+ -.+.|=+.+-.|.|.-+.-|---.|+
T Consensus 88 ~p~~~~dllfaNAvlqWlpd---H~~ll~rL~~~L~Pgg~LAVQmPdN~ 133 (257)
T COG4106 88 KPEQPTDLLFANAVLQWLPD---HPELLPRLVSQLAPGGVLAVQMPDNL 133 (257)
T ss_pred CCCCccchhhhhhhhhhccc---cHHHHHHHHHhhCCCceEEEECCCcc
Confidence 22 22345566776665544 24566688889999998888655554
No 27
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=76.00 E-value=6.7 Score=31.83 Aligned_cols=91 Identities=21% Similarity=0.173 Sum_probs=40.8
Q ss_pred EEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHH----HHHHHHcCCceEEeeec-cCccccccccccCCCCCc
Q 013903 191 IDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERL----ADFAMSLGLPFDFNPLE-GKIGNIIDVSQLGVRPGE 265 (434)
Q Consensus 191 IDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL----~~fA~slgvpFeF~~V~-~~~e~l~~~~~L~~~~~E 265 (434)
+|+|.+.|.==..|++.+ |..++||++.+...| .++.+.-+..+++..+. ...... +. .-.-|=
T Consensus 1 LdiGcG~G~~~~~l~~~~-------~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~fD~ 69 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-------PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDY-DP---PESFDL 69 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--------EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---C-CC-------SE
T ss_pred CEeCccChHHHHHHHHhC-------CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhc-cc---ccccce
Confidence 477887776555555555 799999999887633 12222222333332221 111111 00 012233
Q ss_pred eEEEecccccccccCCChHHHHHHH-HhcCCCE
Q 013903 266 TIVVHWMHHCLYDITGSDLGTLRML-TLLRPKL 297 (434)
Q Consensus 266 aLaVN~~~h~l~~~~~~~~~~L~~i-r~L~P~v 297 (434)
++++|.+||+ .....+|+.+ +-|+|.-
T Consensus 70 V~~~~vl~~l-----~~~~~~l~~~~~~L~pgG 97 (99)
T PF08242_consen 70 VVASNVLHHL-----EDIEAVLRNIYRLLKPGG 97 (99)
T ss_dssp EEEE-TTS-------S-HHHHHHHHTTT-TSS-
T ss_pred ehhhhhHhhh-----hhHHHHHHHHHHHcCCCC
Confidence 5555666664 4466788776 5567754
No 28
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=74.56 E-value=0.74 Score=45.39 Aligned_cols=106 Identities=17% Similarity=0.273 Sum_probs=60.7
Q ss_pred CeeEEEEcccCCccccHHHHHH------HhcCCCCCceEEEEeecCCh---HHHHHHHHHcCCceEEee----eccCccc
Q 013903 186 DCVHIIDLDIMQGLQWPGLFHI------LVSRSKKIRSMRITGFGSSS---ERLADFAMSLGLPFDFNP----LEGKIGN 252 (434)
Q Consensus 186 ~~VHIIDfgI~~G~QWpsLiqa------La~R~~gPP~LRITgI~~~~---~rL~~fA~slgvpFeF~~----V~~~~e~ 252 (434)
+.|||||+.= .|+-|-.| .+..++ +|--||+.. +-+.+||+.+|.++-.+- ..++|..
T Consensus 36 ngihIIDL~k----T~~~l~~A~~~v~~~~~~~g-----~ILfVgTK~~a~~~V~~~A~r~g~~yV~~RwLgG~LTN~~t 106 (252)
T COG0052 36 NGIHIIDLQK----TLERLREAYKFLRRIAANGG-----KILFVGTKKQAQEPVKEFAERTGAYYVNGRWLGGMLTNFKT 106 (252)
T ss_pred CCcEEEEHHH----HHHHHHHHHHHHHHHHcCCC-----EEEEEechHHHHHHHHHHHHHhCCceecCcccCccccCchh
Confidence 6899999963 35555444 444444 456666653 388999999999987552 1223222
Q ss_pred ccc-cccc------------CCCCCceEEEecccccccccCCChHHHHHHHHhcC--CCEEEEEecCCCC
Q 013903 253 IID-VSQL------------GVRPGETIVVHWMHHCLYDITGSDLGTLRMLTLLR--PKLITIVEQDLSH 307 (434)
Q Consensus 253 l~~-~~~L------------~~~~~EaLaVN~~~h~l~~~~~~~~~~L~~ir~L~--P~vvv~vE~ea~~ 307 (434)
+.. ...| .+.+.|++-.+ .-...+..+|.-||+|+ |++++++++..++
T Consensus 107 i~~si~rl~~lE~~~~~~~~~~tKkE~l~l~-------re~~kL~k~lgGIk~m~~~Pd~l~ViDp~~e~ 169 (252)
T COG0052 107 IRKSIKRLKELEKMEEDGFDGLTKKEALMLT-------RELEKLEKSLGGIKDMKGLPDVLFVIDPRKEK 169 (252)
T ss_pred HHHHHHHHHHHHHHhhcccccccHHHHHHHH-------HHHHHHHHhhcchhhccCCCCEEEEeCCcHhH
Confidence 210 0111 01122332211 11233567788888886 8888888877655
No 29
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=74.32 E-value=9 Score=29.93 Aligned_cols=87 Identities=22% Similarity=0.331 Sum_probs=46.5
Q ss_pred EEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHHHHHHHc---CCceEEeeeccCccccccccccCCCCC--c
Q 013903 191 IDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADFAMSL---GLPFDFNPLEGKIGNIIDVSQLGVRPG--E 265 (434)
Q Consensus 191 IDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~~fA~sl---gvpFeF~~V~~~~e~l~~~~~L~~~~~--E 265 (434)
+|+|.|.|.....|.+. +-.++|+++.+.+.+....+.. +++ |. ..+ ...+...++ +
T Consensus 1 LdiG~G~G~~~~~l~~~--------~~~~v~~~D~~~~~~~~~~~~~~~~~~~--~~--~~d------~~~l~~~~~sfD 62 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--------GGASVTGIDISEEMLEQARKRLKNEGVS--FR--QGD------AEDLPFPDNSFD 62 (95)
T ss_dssp EEET-TTSHHHHHHHHT--------TTCEEEEEES-HHHHHHHHHHTTTSTEE--EE--ESB------TTSSSS-TT-EE
T ss_pred CEecCcCCHHHHHHHhc--------cCCEEEEEeCCHHHHHHHHhcccccCch--he--eeh------HHhCcccccccc
Confidence 58888888765555544 4679999999988554444433 344 22 222 223333444 2
Q ss_pred eEEEe-cccccccccCCChHHHHH-HHHhcCCCEEEE
Q 013903 266 TIVVH-WMHHCLYDITGSDLGTLR-MLTLLRPKLITI 300 (434)
Q Consensus 266 aLaVN-~~~h~l~~~~~~~~~~L~-~ir~L~P~vvv~ 300 (434)
.++.+ .++|+ .....+++ ..|-|+|.-..+
T Consensus 63 ~v~~~~~~~~~-----~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 63 VVFSNSVLHHL-----EDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp EEEEESHGGGS-----SHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccccceeec-----cCHHHHHHHHHHHcCcCeEEe
Confidence 34334 34443 33556665 457788876654
No 30
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=74.04 E-value=29 Score=34.79 Aligned_cols=116 Identities=16% Similarity=0.133 Sum_probs=65.3
Q ss_pred HHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHHHHHHHcC---CceEEeeeccCccccc
Q 013903 178 IFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADFAMSLG---LPFDFNPLEGKIGNII 254 (434)
Q Consensus 178 ILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~~fA~slg---vpFeF~~V~~~~e~l~ 254 (434)
|.+.+. ....|||+|.|.|.-=..|++++.. ..++|+|+.+.+.|...++.+. -..++..+..+..+..
T Consensus 57 ia~~~~--~~~~iLELGcGtG~~t~~Ll~~l~~------~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~ 128 (301)
T TIGR03438 57 IAAATG--AGCELVELGSGSSRKTRLLLDALRQ------PARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPL 128 (301)
T ss_pred HHHhhC--CCCeEEecCCCcchhHHHHHHhhcc------CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchh
Confidence 444553 2347999999999876677777742 4789999999987777666532 1234444544332210
Q ss_pred c-ccccCCCCCceEEEe--cccccccccCCChHHHHHHH-HhcCCCEEEEEecCC
Q 013903 255 D-VSQLGVRPGETIVVH--WMHHCLYDITGSDLGTLRML-TLLRPKLITIVEQDL 305 (434)
Q Consensus 255 ~-~~~L~~~~~EaLaVN--~~~h~l~~~~~~~~~~L~~i-r~L~P~vvv~vE~ea 305 (434)
. +. ....+..+++. +..+.+. +.....||+.+ +.|+|.-..++.-+.
T Consensus 129 ~~~~--~~~~~~~~~~~~gs~~~~~~--~~e~~~~L~~i~~~L~pgG~~lig~d~ 179 (301)
T TIGR03438 129 ALPP--EPAAGRRLGFFPGSTIGNFT--PEEAVAFLRRIRQLLGPGGGLLIGVDL 179 (301)
T ss_pred hhhc--ccccCCeEEEEecccccCCC--HHHHHHHHHHHHHhcCCCCEEEEeccC
Confidence 0 11 11112344443 2222221 23356788776 678998766654443
No 31
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=73.13 E-value=61 Score=34.38 Aligned_cols=108 Identities=12% Similarity=0.129 Sum_probs=59.6
Q ss_pred HhHHHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHHH---HHHHcCCceEEeeeccCc
Q 013903 174 ANQAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLAD---FAMSLGLPFDFNPLEGKI 250 (434)
Q Consensus 174 ANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~~---fA~slgvpFeF~~V~~~~ 250 (434)
....+++.+.-.+.-+|+|+|.|.|. +...|+.+.+ .++|||+.+.+.|.. -+...+...+|... ++
T Consensus 254 ~te~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~~----~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~--d~ 323 (475)
T PLN02336 254 TTKEFVDKLDLKPGQKVLDVGCGIGG----GDFYMAENFD----VHVVGIDLSVNMISFALERAIGRKCSVEFEVA--DC 323 (475)
T ss_pred HHHHHHHhcCCCCCCEEEEEeccCCH----HHHHHHHhcC----CEEEEEECCHHHHHHHHHHhhcCCCceEEEEc--Cc
Confidence 44556776654445689999999995 3445666553 389999998763322 12223334555432 12
Q ss_pred cccccccccCCCCC--ceEEEe-cccccccccCCChHHHHH-HHHhcCCCEEEEEe
Q 013903 251 GNIIDVSQLGVRPG--ETIVVH-WMHHCLYDITGSDLGTLR-MLTLLRPKLITIVE 302 (434)
Q Consensus 251 e~l~~~~~L~~~~~--EaLaVN-~~~h~l~~~~~~~~~~L~-~ir~L~P~vvv~vE 302 (434)
.+. .+.++ +.++.+ .++|. ++ ...+|+ ..+.|+|.-.+++.
T Consensus 324 ~~~------~~~~~~fD~I~s~~~l~h~----~d-~~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 324 TKK------TYPDNSFDVIYSRDTILHI----QD-KPALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred ccC------CCCCCCEEEEEECCccccc----CC-HHHHHHHHHHHcCCCeEEEEE
Confidence 221 11112 233322 34442 22 445554 55888999887764
No 32
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=73.07 E-value=27 Score=33.04 Aligned_cols=99 Identities=16% Similarity=0.111 Sum_probs=54.4
Q ss_pred EEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHHHHHHHcCCceEEeeeccCccccccccccCCCCCceEE
Q 013903 189 HIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADFAMSLGLPFDFNPLEGKIGNIIDVSQLGVRPGETIV 268 (434)
Q Consensus 189 HIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~~fA~slgvpFeF~~V~~~~e~l~~~~~L~~~~~EaLa 268 (434)
.|+|+|.|.|..-..|.+.+ |..++|||+.+.+.+....+.+. ..++.. ..+. + .+.-..=++|+
T Consensus 46 ~VLDiGCG~G~~~~~L~~~~-------~~~~v~giDiS~~~l~~A~~~~~-~~~~~~--~d~~---~--~~~~~sfD~V~ 110 (204)
T TIGR03587 46 SILELGANIGMNLAALKRLL-------PFKHIYGVEINEYAVEKAKAYLP-NINIIQ--GSLF---D--PFKDNFFDLVL 110 (204)
T ss_pred cEEEEecCCCHHHHHHHHhC-------CCCeEEEEECCHHHHHHHHhhCC-CCcEEE--eecc---C--CCCCCCEEEEE
Confidence 59999999996554443322 23589999988875544333221 122221 1111 1 01111113455
Q ss_pred Ee-cccccccccCCChHHHHHHHHhcCCCEEEEEecCC
Q 013903 269 VH-WMHHCLYDITGSDLGTLRMLTLLRPKLITIVEQDL 305 (434)
Q Consensus 269 VN-~~~h~l~~~~~~~~~~L~~ir~L~P~vvv~vE~ea 305 (434)
.| .++|+ . +.....+++.+.+..-+.++++|...
T Consensus 111 ~~~vL~hl-~--p~~~~~~l~el~r~~~~~v~i~e~~~ 145 (204)
T TIGR03587 111 TKGVLIHI-N--PDNLPTAYRELYRCSNRYILIAEYYN 145 (204)
T ss_pred ECChhhhC-C--HHHHHHHHHHHHhhcCcEEEEEEeeC
Confidence 55 34553 1 34457788877777778888888754
No 33
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=71.72 E-value=94 Score=29.78 Aligned_cols=107 Identities=18% Similarity=0.240 Sum_probs=58.6
Q ss_pred hHhHHHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHHHHHHHcCCceEEeeeccCccc
Q 013903 173 TANQAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADFAMSLGLPFDFNPLEGKIGN 252 (434)
Q Consensus 173 tANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~~fA~slgvpFeF~~V~~~~e~ 252 (434)
..-+.+++.+...+.-+|+|+|.|.|. +.+.|+.+ + -++|+++.+.+.|.. |+.......| +..++++
T Consensus 29 ~~a~~l~~~l~~~~~~~vLDiGcG~G~----~~~~l~~~-~----~~v~~~D~s~~~l~~-a~~~~~~~~~--~~~d~~~ 96 (251)
T PRK10258 29 QSADALLAMLPQRKFTHVLDAGCGPGW----MSRYWRER-G----SQVTALDLSPPMLAQ-ARQKDAADHY--LAGDIES 96 (251)
T ss_pred HHHHHHHHhcCccCCCeEEEeeCCCCH----HHHHHHHc-C----CeEEEEECCHHHHHH-HHhhCCCCCE--EEcCccc
Confidence 344556666665445579999999994 55566653 2 479999988765443 4333222222 2233333
Q ss_pred cccccccCCCCC--ceEEEecccccccccCCChHHHHH-HHHhcCCCEEEEE
Q 013903 253 IIDVSQLGVRPG--ETIVVHWMHHCLYDITGSDLGTLR-MLTLLRPKLITIV 301 (434)
Q Consensus 253 l~~~~~L~~~~~--EaLaVN~~~h~l~~~~~~~~~~L~-~ir~L~P~vvv~v 301 (434)
+ ...++ +.|+-|..+|.. .+...+|. ..+-|+|.-.++.
T Consensus 97 ~------~~~~~~fD~V~s~~~l~~~----~d~~~~l~~~~~~Lk~gG~l~~ 138 (251)
T PRK10258 97 L------PLATATFDLAWSNLAVQWC----GNLSTALRELYRVVRPGGVVAF 138 (251)
T ss_pred C------cCCCCcEEEEEECchhhhc----CCHHHHHHHHHHHcCCCeEEEE
Confidence 3 12222 455555433322 22445554 5578899765554
No 34
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=71.70 E-value=54 Score=32.20 Aligned_cols=113 Identities=11% Similarity=0.134 Sum_probs=61.5
Q ss_pred hhHhHhHHHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHHHHHHHcC--CceEEeeec
Q 013903 170 SHFTANQAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADFAMSLG--LPFDFNPLE 247 (434)
Q Consensus 170 a~~tANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~~fA~slg--vpFeF~~V~ 247 (434)
+-+-+.+.|++.+.-...-+|+|+|.+.|.-- ..|+.+. ..++|||+.+.+.+....+... -..+|..
T Consensus 36 gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a----~~la~~~----~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~-- 105 (263)
T PTZ00098 36 GGIEATTKILSDIELNENSKVLDIGSGLGGGC----KYINEKY----GAHVHGVDICEKMVNIAKLRNSDKNKIEFEA-- 105 (263)
T ss_pred CchHHHHHHHHhCCCCCCCEEEEEcCCCChhh----HHHHhhc----CCEEEEEECCHHHHHHHHHHcCcCCceEEEE--
Confidence 33455677778776566678999999998832 3344433 2489999987753332222221 1233332
Q ss_pred cCccccccccccCCCCC--ceEEEe-cccccccccCCChHHHHHHH-HhcCCCEEEEE
Q 013903 248 GKIGNIIDVSQLGVRPG--ETIVVH-WMHHCLYDITGSDLGTLRML-TLLRPKLITIV 301 (434)
Q Consensus 248 ~~~e~l~~~~~L~~~~~--EaLaVN-~~~h~l~~~~~~~~~~L~~i-r~L~P~vvv~v 301 (434)
.+..+. ...++ ++++.+ +++|.- ......+|+.+ +.|+|.-.+++
T Consensus 106 ~D~~~~------~~~~~~FD~V~s~~~l~h~~---~~d~~~~l~~i~r~LkPGG~lvi 154 (263)
T PTZ00098 106 NDILKK------DFPENTFDMIYSRDAILHLS---YADKKKLFEKCYKWLKPNGILLI 154 (263)
T ss_pred CCcccC------CCCCCCeEEEEEhhhHHhCC---HHHHHHHHHHHHHHcCCCcEEEE
Confidence 111111 11122 344443 455531 12356677654 77899877665
No 35
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=71.29 E-value=24 Score=35.25 Aligned_cols=111 Identities=15% Similarity=0.155 Sum_probs=65.6
Q ss_pred hHHHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH---HHHHHHHHcCCceEEeeeccCcc
Q 013903 175 NQAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE---RLADFAMSLGLPFDFNPLEGKIG 251 (434)
Q Consensus 175 NqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~---rL~~fA~slgvpFeF~~V~~~~e 251 (434)
...|+|.+.=+.-=||+|+|.| |-++...+|++.| .++|||..+.+ ...+.++..|++=....+..+..
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcG----wG~~~~~~a~~~g----~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~ 122 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCG----WGGLAIYAAERYG----CHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYR 122 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-T----TSHHHHHHHHHH------EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GG
T ss_pred HHHHHHHhCCCCCCEEEEeCCC----ccHHHHHHHHHcC----cEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecc
Confidence 3456777664455699999765 6688889998864 58999998876 66677888898643333333333
Q ss_pred ccccccccCCCCCceEEEecccccccccCCChHHHHHHH-HhcCCCEEEEEe
Q 013903 252 NIIDVSQLGVRPGETIVVHWMHHCLYDITGSDLGTLRML-TLLRPKLITIVE 302 (434)
Q Consensus 252 ~l~~~~~L~~~~~EaLaVN~~~h~l~~~~~~~~~~L~~i-r~L~P~vvv~vE 302 (434)
++ .-.-|-++.|-.+-|+ .......|++.+ +-|+|.-.+++.
T Consensus 123 ~~------~~~fD~IvSi~~~Ehv---g~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 123 DL------PGKFDRIVSIEMFEHV---GRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp G---------S-SEEEEESEGGGT---CGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred cc------CCCCCEEEEEechhhc---ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 33 1122434444444443 123457888877 678999887763
No 36
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=70.85 E-value=26 Score=32.90 Aligned_cols=96 Identities=14% Similarity=0.142 Sum_probs=51.2
Q ss_pred EEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH---HHHHHHHHcCCceEEeeeccCccccccccccCCCCCc
Q 013903 189 HIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE---RLADFAMSLGLPFDFNPLEGKIGNIIDVSQLGVRPGE 265 (434)
Q Consensus 189 HIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~---rL~~fA~slgvpFeF~~V~~~~e~l~~~~~L~~~~~E 265 (434)
+|+|+|.+.|. +...++.+. |..++|||+.+.+ ...+..+..|+.-....+..+..+. + +. ..=+
T Consensus 2 ~vLDiGcG~G~----~~~~la~~~---~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~--~--~~-~~fD 69 (224)
T smart00828 2 RVLDFGCGYGS----DLIDLAERH---PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD--P--FP-DTYD 69 (224)
T ss_pred eEEEECCCCCH----HHHHHHHHC---CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC--C--CC-CCCC
Confidence 68999988885 344555543 2468999998765 2233344456654333333222221 1 00 1123
Q ss_pred eEEEe-cccccccccCCChHHHHHHH-HhcCCCEEEEE
Q 013903 266 TIVVH-WMHHCLYDITGSDLGTLRML-TLLRPKLITIV 301 (434)
Q Consensus 266 aLaVN-~~~h~l~~~~~~~~~~L~~i-r~L~P~vvv~v 301 (434)
.++.+ .++| . .....+|+.+ +.|+|.-.+++
T Consensus 70 ~I~~~~~l~~-~----~~~~~~l~~~~~~LkpgG~l~i 102 (224)
T smart00828 70 LVFGFEVIHH-I----KDKMDLFSNISRHLKDGGHLVL 102 (224)
T ss_pred EeehHHHHHh-C----CCHHHHHHHHHHHcCCCCEEEE
Confidence 34333 3344 2 2356777666 66899876654
No 37
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=70.45 E-value=35 Score=32.12 Aligned_cols=111 Identities=14% Similarity=0.154 Sum_probs=59.9
Q ss_pred hhHhHhHHHHhhcC--CCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHH---HHHHHHcCC--ceE
Q 013903 170 SHFTANQAIFQALD--GADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERL---ADFAMSLGL--PFD 242 (434)
Q Consensus 170 a~~tANqAILEA~~--g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL---~~fA~slgv--pFe 242 (434)
++-...+.+++.+. ..+.-+|+|+|.|.|. +...|+.+. .+||||+.+.+.+ .+-+...++ ..+
T Consensus 37 ~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~----~~~~la~~~-----~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~ 107 (219)
T TIGR02021 37 GRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGL----LSIELAKRG-----AIVKAVDISEQMVQMARNRAQGRDVAGNVE 107 (219)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCH----HHHHHHHCC-----CEEEEEECCHHHHHHHHHHHHhcCCCCceE
Confidence 44555666777665 2346799999999985 555666541 3899999887733 223333343 344
Q ss_pred EeeeccCccccccccccCCCCCceEEE-ecccccccccCCChHHHHHHHH-hcCCCEEEEE
Q 013903 243 FNPLEGKIGNIIDVSQLGVRPGETIVV-HWMHHCLYDITGSDLGTLRMLT-LLRPKLITIV 301 (434)
Q Consensus 243 F~~V~~~~e~l~~~~~L~~~~~EaLaV-N~~~h~l~~~~~~~~~~L~~ir-~L~P~vvv~v 301 (434)
|.. .++.++ . ..=++++. +.++|.- ......+++.+. .++|.+++..
T Consensus 108 ~~~--~d~~~~------~-~~fD~ii~~~~l~~~~---~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 108 FEV--NDLLSL------C-GEFDIVVCMDVLIHYP---ASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred EEE--CChhhC------C-CCcCEEEEhhHHHhCC---HHHHHHHHHHHHHHhCCCEEEEE
Confidence 443 223332 1 12234433 3444421 122455666554 4566665554
No 38
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=70.02 E-value=39 Score=32.94 Aligned_cols=97 Identities=14% Similarity=0.167 Sum_probs=51.1
Q ss_pred eEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHH---HHHHHHHcCCceEEeeeccCccccccccccCCCCC
Q 013903 188 VHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSER---LADFAMSLGLPFDFNPLEGKIGNIIDVSQLGVRPG 264 (434)
Q Consensus 188 VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~r---L~~fA~slgvpFeF~~V~~~~e~l~~~~~L~~~~~ 264 (434)
=+|+|+|.|.|.--. .++...+ +.-+||||+.+.+. ..+.++..|++ ....+..+++++ .+.++
T Consensus 79 ~~VLDiG~G~G~~~~----~~a~~~g--~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l------~~~~~ 145 (272)
T PRK11873 79 ETVLDLGSGGGFDCF----LAARRVG--PTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEAL------PVADN 145 (272)
T ss_pred CEEEEeCCCCCHHHH----HHHHHhC--CCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhC------CCCCC
Confidence 389999998874222 1222211 34589999988763 23334445653 122222333333 22222
Q ss_pred --ceEEEecccccccccCCChHHHH-HHHHhcCCCEEEEE
Q 013903 265 --ETIVVHWMHHCLYDITGSDLGTL-RMLTLLRPKLITIV 301 (434)
Q Consensus 265 --EaLaVN~~~h~l~~~~~~~~~~L-~~ir~L~P~vvv~v 301 (434)
+.++.|+.+|... + ...+| ...+-|+|.-.+++
T Consensus 146 ~fD~Vi~~~v~~~~~---d-~~~~l~~~~r~LkpGG~l~i 181 (272)
T PRK11873 146 SVDVIISNCVINLSP---D-KERVFKEAFRVLKPGGRFAI 181 (272)
T ss_pred ceeEEEEcCcccCCC---C-HHHHHHHHHHHcCCCcEEEE
Confidence 4566676654322 2 33444 56688899866554
No 39
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=69.48 E-value=42 Score=34.27 Aligned_cols=107 Identities=14% Similarity=0.091 Sum_probs=56.7
Q ss_pred HHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHHHH--HHHc-C--CceEEeeeccCcc
Q 013903 177 AIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADF--AMSL-G--LPFDFNPLEGKIG 251 (434)
Q Consensus 177 AILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~~f--A~sl-g--vpFeF~~V~~~~e 251 (434)
+|++.+...+.=+|+|+|.|.|. ++..++.+ |+ -+++||+++...+.++ ++.. + -...+.. ..++
T Consensus 112 ~~l~~l~~~~g~~VLDvGCG~G~----~~~~~~~~--g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~--~~ie 181 (314)
T TIGR00452 112 RVLPHLSPLKGRTILDVGCGSGY----HMWRMLGH--GA--KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEP--LGIE 181 (314)
T ss_pred HHHHhcCCCCCCEEEEeccCCcH----HHHHHHHc--CC--CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEE--CCHH
Confidence 45555543333489999999997 33444433 33 2789999988755543 2222 2 1223322 2344
Q ss_pred ccccccccCCCCCceEEEe-cccccccccCCChHHHHHHHHhcCCCEEEEEe
Q 013903 252 NIIDVSQLGVRPGETIVVH-WMHHCLYDITGSDLGTLRMLTLLRPKLITIVE 302 (434)
Q Consensus 252 ~l~~~~~L~~~~~EaLaVN-~~~h~l~~~~~~~~~~L~~ir~L~P~vvv~vE 302 (434)
++ ... ..=++|+.+ .++|. .++.+.+-..-+.|+|.-.++++
T Consensus 182 ~l-p~~----~~FD~V~s~gvL~H~----~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 182 QL-HEL----YAFDTVFSMGVLYHR----KSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred HC-CCC----CCcCEEEEcchhhcc----CCHHHHHHHHHHhcCCCCEEEEE
Confidence 44 111 122445444 34442 33334444455779999776654
No 40
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=69.17 E-value=11 Score=30.87 Aligned_cols=51 Identities=25% Similarity=0.182 Sum_probs=31.5
Q ss_pred EEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHHHHHHH---cCCceEEe
Q 013903 190 IIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADFAMS---LGLPFDFN 244 (434)
Q Consensus 190 IIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~~fA~s---lgvpFeF~ 244 (434)
|+|+|.|.|.-=..|.+.+ . .+ |..++|||+.+.+.|...++. .|++.+|.
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~--~~-~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~ 54 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-D--AG-PSSRVIGVDISPEMLELAKKRFSEDGPKVRFV 54 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------SEEEEEES-HHHHHHHHHHSHHTTTTSEEE
T ss_pred CEEeecCCcHHHHHHHHHh-h--hc-ccceEEEEECCHHHHHHHHHhchhcCCceEEE
Confidence 7999999998766666665 1 12 569999999998855444433 45777773
No 41
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=69.09 E-value=1e+02 Score=29.09 Aligned_cols=104 Identities=14% Similarity=0.192 Sum_probs=52.7
Q ss_pred hcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHH---HHHHHHcCCceEEeeeccCcccccccc
Q 013903 181 ALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERL---ADFAMSLGLPFDFNPLEGKIGNIIDVS 257 (434)
Q Consensus 181 A~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL---~~fA~slgvpFeF~~V~~~~e~l~~~~ 257 (434)
.+...+..+|+|+|.+.|.- ...++.+ + .++|+|+.+.+.+ .+.+...++..+|... ...++. .
T Consensus 43 ~~~~~~~~~vLdiG~G~G~~----~~~l~~~-~----~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~--~ 109 (233)
T PRK05134 43 HAGGLFGKRVLDVGCGGGIL----SESMARL-G----ADVTGIDASEENIEVARLHALESGLKIDYRQT--TAEELA--A 109 (233)
T ss_pred hccCCCCCeEEEeCCCCCHH----HHHHHHc-C----CeEEEEcCCHHHHHHHHHHHHHcCCceEEEec--CHHHhh--h
Confidence 33334567899999998863 3344443 2 3699999887622 2333344555555432 222220 0
Q ss_pred ccCCCCCceEEEecccccccccCCChHHHHHH-HHhcCCCEEEEEe
Q 013903 258 QLGVRPGETIVVHWMHHCLYDITGSDLGTLRM-LTLLRPKLITIVE 302 (434)
Q Consensus 258 ~L~~~~~EaLaVN~~~h~l~~~~~~~~~~L~~-ir~L~P~vvv~vE 302 (434)
..-..-+.++.+.+.+ ..+ ....+|+. .+.|+|.-.+++.
T Consensus 110 -~~~~~fD~Ii~~~~l~---~~~-~~~~~l~~~~~~L~~gG~l~v~ 150 (233)
T PRK05134 110 -EHPGQFDVVTCMEMLE---HVP-DPASFVRACAKLVKPGGLVFFS 150 (233)
T ss_pred -hcCCCccEEEEhhHhh---ccC-CHHHHHHHHHHHcCCCcEEEEE
Confidence 0011224444433222 222 24455554 4667888666554
No 42
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=67.33 E-value=36 Score=33.54 Aligned_cols=48 Identities=15% Similarity=0.060 Sum_probs=35.1
Q ss_pred CCCeeEEEEcccCCccccHHHHHHHhcCCC--CCceEEEEeecCChHHHH
Q 013903 184 GADCVHIIDLDIMQGLQWPGLFHILVSRSK--KIRSMRITGFGSSSERLA 231 (434)
Q Consensus 184 g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~--gPP~LRITgI~~~~~rL~ 231 (434)
..+.++|.|.|.+.|--.-+|--.|++.-. ..+..+|||++.+.+.|.
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~ 146 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALE 146 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHH
Confidence 345799999999999887766666655322 234789999999887443
No 43
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=65.70 E-value=71 Score=33.43 Aligned_cols=106 Identities=15% Similarity=0.169 Sum_probs=54.3
Q ss_pred HHHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHHHHHHHc-CCceEEeeeccCccccc
Q 013903 176 QAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADFAMSL-GLPFDFNPLEGKIGNII 254 (434)
Q Consensus 176 qAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~~fA~sl-gvpFeF~~V~~~~e~l~ 254 (434)
..|++.+.-...-+|+|+|.|.|. +...++.+.+ .++|||+.+.+.+....+.. ++..+|.. .+..++
T Consensus 157 ~~l~~~l~l~~g~rVLDIGcG~G~----~a~~la~~~g----~~V~giDlS~~~l~~A~~~~~~l~v~~~~--~D~~~l- 225 (383)
T PRK11705 157 DLICRKLQLKPGMRVLDIGCGWGG----LARYAAEHYG----VSVVGVTISAEQQKLAQERCAGLPVEIRL--QDYRDL- 225 (383)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccH----HHHHHHHHCC----CEEEEEeCCHHHHHHHHHHhccCeEEEEE--Cchhhc-
Confidence 445555543344589999987775 4455565543 48999998876332222211 33333332 112111
Q ss_pred cccccCCCCCceEEEe-cccccccccCCChHHHHHHH-HhcCCCEEEEE
Q 013903 255 DVSQLGVRPGETIVVH-WMHHCLYDITGSDLGTLRML-TLLRPKLITIV 301 (434)
Q Consensus 255 ~~~~L~~~~~EaLaVN-~~~h~l~~~~~~~~~~L~~i-r~L~P~vvv~v 301 (434)
. ..=+.++.+ .++|. . ......+++.+ +-|+|.-.+++
T Consensus 226 -----~-~~fD~Ivs~~~~ehv-g--~~~~~~~l~~i~r~LkpGG~lvl 265 (383)
T PRK11705 226 -----N-GQFDRIVSVGMFEHV-G--PKNYRTYFEVVRRCLKPDGLFLL 265 (383)
T ss_pred -----C-CCCCEEEEeCchhhC-C--hHHHHHHHHHHHHHcCCCcEEEE
Confidence 1 111334333 33342 1 12235666544 77899877665
No 44
>PLN02244 tocopherol O-methyltransferase
Probab=64.66 E-value=74 Score=32.51 Aligned_cols=94 Identities=17% Similarity=0.141 Sum_probs=53.2
Q ss_pred CeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH---HHHHHHHHcCCc--eEEeeeccCccccccccccC
Q 013903 186 DCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE---RLADFAMSLGLP--FDFNPLEGKIGNIIDVSQLG 260 (434)
Q Consensus 186 ~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~---rL~~fA~slgvp--FeF~~V~~~~e~l~~~~~L~ 260 (434)
+.-+|+|+|.|.|. +...|+.+.+ .++|||+.+.. +..+.++..|+. .+|.. .+..++ .
T Consensus 118 ~~~~VLDiGCG~G~----~~~~La~~~g----~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~--~D~~~~------~ 181 (340)
T PLN02244 118 RPKRIVDVGCGIGG----SSRYLARKYG----ANVKGITLSPVQAARANALAAAQGLSDKVSFQV--ADALNQ------P 181 (340)
T ss_pred CCCeEEEecCCCCH----HHHHHHHhcC----CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE--cCcccC------C
Confidence 34579999999985 4456666543 38999998876 444555555653 45542 222222 1
Q ss_pred CCCC--ceEEEe-cccccccccCCChHHHHH-HHHhcCCCEEEE
Q 013903 261 VRPG--ETIVVH-WMHHCLYDITGSDLGTLR-MLTLLRPKLITI 300 (434)
Q Consensus 261 ~~~~--EaLaVN-~~~h~l~~~~~~~~~~L~-~ir~L~P~vvv~ 300 (434)
..++ ++|+.+ +++|. + +...+|+ ..|-|+|.-.++
T Consensus 182 ~~~~~FD~V~s~~~~~h~----~-d~~~~l~e~~rvLkpGG~lv 220 (340)
T PLN02244 182 FEDGQFDLVWSMESGEHM----P-DKRKFVQELARVAAPGGRII 220 (340)
T ss_pred CCCCCccEEEECCchhcc----C-CHHHHHHHHHHHcCCCcEEE
Confidence 2222 344433 44553 2 2455664 558889975444
No 45
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=63.72 E-value=82 Score=25.88 Aligned_cols=45 Identities=13% Similarity=0.075 Sum_probs=30.3
Q ss_pred EEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH---HHHHHHHHcCCc
Q 013903 189 HIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE---RLADFAMSLGLP 240 (434)
Q Consensus 189 HIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~---rL~~fA~slgvp 240 (434)
+|+|+|.|.|.. ...++.+. |..++|+|+.+.. ...+.++.++++
T Consensus 22 ~vldlG~G~G~~----~~~l~~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 69 (124)
T TIGR02469 22 VLWDIGAGSGSI----TIEAARLV---PNGRVYAIERNPEALRLIERNARRFGVS 69 (124)
T ss_pred EEEEeCCCCCHH----HHHHHHHC---CCceEEEEcCCHHHHHHHHHHHHHhCCC
Confidence 899999998864 33344432 2378999998876 444556666654
No 46
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=63.64 E-value=1.2e+02 Score=27.59 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=30.6
Q ss_pred EEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH---HHHHHHHHcCCceEEe
Q 013903 189 HIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE---RLADFAMSLGLPFDFN 244 (434)
Q Consensus 189 HIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~---rL~~fA~slgvpFeF~ 244 (434)
.|+|+|.|.|. +...++.+ ++ ++|+|+.+.+ ...+-++..++..+|.
T Consensus 22 ~vLdlG~G~G~----~~~~l~~~--~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~ 71 (179)
T TIGR00537 22 DVLEIGAGTGL----VAIRLKGK--GK---CILTTDINPFAVKELRENAKLNNVGLDVV 71 (179)
T ss_pred eEEEeCCChhH----HHHHHHhc--CC---EEEEEECCHHHHHHHHHHHHHcCCceEEE
Confidence 49999999994 44555554 33 8999998876 3333344556654443
No 47
>PRK08317 hypothetical protein; Provisional
Probab=63.08 E-value=1.3e+02 Score=27.81 Aligned_cols=109 Identities=20% Similarity=0.247 Sum_probs=56.5
Q ss_pred HHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHHHHHHHc----CCceEEeeeccCcccc
Q 013903 178 IFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADFAMSL----GLPFDFNPLEGKIGNI 253 (434)
Q Consensus 178 ILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~~fA~sl----gvpFeF~~V~~~~e~l 253 (434)
+++.+.-...-+|+|+|.|.|. |. ..++.+. +|.-++|||+.+.+.+ ++|+.. +...+|.. .+..++
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~-~~---~~~a~~~--~~~~~v~~~d~~~~~~-~~a~~~~~~~~~~~~~~~--~d~~~~ 81 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGN-DA---RELARRV--GPEGRVVGIDRSEAML-ALAKERAAGLGPNVEFVR--GDADGL 81 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCH-HH---HHHHHhc--CCCcEEEEEeCCHHHH-HHHHHHhhCCCCceEEEe--cccccC
Confidence 5566665556689999999874 33 3444332 2456899999887643 344332 22333332 222222
Q ss_pred ccccccCCCCCceEEEec-ccccccccCCChHHHH-HHHHhcCCCEEEEE-ecC
Q 013903 254 IDVSQLGVRPGETIVVHW-MHHCLYDITGSDLGTL-RMLTLLRPKLITIV-EQD 304 (434)
Q Consensus 254 ~~~~~L~~~~~EaLaVN~-~~h~l~~~~~~~~~~L-~~ir~L~P~vvv~v-E~e 304 (434)
. +.-..-+.++.+. ++| + .+ ...+| +..+.|+|.-.++. |.+
T Consensus 82 -~---~~~~~~D~v~~~~~~~~-~---~~-~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 82 -P---FPDGSFDAVRSDRVLQH-L---ED-PARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred -C---CCCCCceEEEEechhhc-c---CC-HHHHHHHHHHHhcCCcEEEEEecC
Confidence 1 1111223444443 333 2 22 34445 45577899886654 443
No 48
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=62.97 E-value=17 Score=32.14 Aligned_cols=57 Identities=21% Similarity=0.373 Sum_probs=37.7
Q ss_pred cCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH---HHHHHHHHcCCce
Q 013903 182 LDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE---RLADFAMSLGLPF 241 (434)
Q Consensus 182 ~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~---rL~~fA~slgvpF 241 (434)
-...+..+|||+|-|.|.==-.|-..|... .|.++|+||+.+.. ...+.++.++..+
T Consensus 21 ~~~~~~~~vvD~GsG~GyLs~~La~~l~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~ 80 (141)
T PF13679_consen 21 GESKRCITVVDLGSGKGYLSRALAHLLCNS---SPNLRVLGIDCNESLVESAQKRAQKLGSDL 80 (141)
T ss_pred hccCCCCEEEEeCCChhHHHHHHHHHHHhc---CCCCeEEEEECCcHHHHHHHHHHHHhcchh
Confidence 345778999999999985222222223222 27899999998765 5666677776444
No 49
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=62.88 E-value=1.1e+02 Score=29.17 Aligned_cols=104 Identities=15% Similarity=0.102 Sum_probs=58.7
Q ss_pred eEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH---HHHHHHHHcCCceEEeeeccCccccccccccCCCCC
Q 013903 188 VHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE---RLADFAMSLGLPFDFNPLEGKIGNIIDVSQLGVRPG 264 (434)
Q Consensus 188 VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~---rL~~fA~slgvpFeF~~V~~~~e~l~~~~~L~~~~~ 264 (434)
-.|+|++.|.|.- -+.+|+.. .-++|+|+.+.+ .+.+-++.+|+. ....+..++.+.. . .. -.+=
T Consensus 55 ~~vLDl~~GsG~l---~l~~lsr~-----a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l-~-~~-~~~f 122 (199)
T PRK10909 55 ARCLDCFAGSGAL---GLEALSRY-----AAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFL-A-QP-GTPH 122 (199)
T ss_pred CEEEEcCCCccHH---HHHHHHcC-----CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHH-h-hc-CCCc
Confidence 3689999998842 23455532 138999998766 344445556653 2333333322211 1 00 1122
Q ss_pred ceEEEecccccccccCCChHHHHHHHHh---cCCCEEEEEecCCCCC
Q 013903 265 ETIVVHWMHHCLYDITGSDLGTLRMLTL---LRPKLITIVEQDLSHG 308 (434)
Q Consensus 265 EaLaVN~~~h~l~~~~~~~~~~L~~ir~---L~P~vvv~vE~ea~~n 308 (434)
+.+++|=..+ .+-...+++.|.. ++|+-++++|.....+
T Consensus 123 DlV~~DPPy~-----~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~~ 164 (199)
T PRK10909 123 NVVFVDPPFR-----KGLLEETINLLEDNGWLADEALIYVESEVENG 164 (199)
T ss_pred eEEEECCCCC-----CChHHHHHHHHHHCCCcCCCcEEEEEecCCCC
Confidence 5666662211 2334567777776 6999999999776543
No 50
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=62.70 E-value=22 Score=35.19 Aligned_cols=97 Identities=22% Similarity=0.314 Sum_probs=60.3
Q ss_pred CeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH---HHHHHHHHcCCceEEeeeccCccccccccccCCC
Q 013903 186 DCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE---RLADFAMSLGLPFDFNPLEGKIGNIIDVSQLGVR 262 (434)
Q Consensus 186 ~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~---rL~~fA~slgvpFeF~~V~~~~e~l~~~~~L~~~ 262 (434)
...-|.|+|.|-| .|-+.||.. | ..+|||+.+.+ -=...|.+-|+..+|.... .+++... +
T Consensus 59 ~g~~vLDvGCGgG----~Lse~mAr~-G----a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~--~edl~~~---~-- 122 (243)
T COG2227 59 PGLRVLDVGCGGG----ILSEPLARL-G----ASVTGIDASEKPIEVAKLHALESGVNIDYRQAT--VEDLASA---G-- 122 (243)
T ss_pred CCCeEEEecCCcc----HhhHHHHHC-C----CeeEEecCChHHHHHHHHhhhhccccccchhhh--HHHHHhc---C--
Confidence 4567899999988 677778765 3 89999998765 2234667788888887654 3444211 1
Q ss_pred CCceEEEecccccccccCCChHHHHH-HHHhcCCCEEEEE
Q 013903 263 PGETIVVHWMHHCLYDITGSDLGTLR-MLTLLRPKLITIV 301 (434)
Q Consensus 263 ~~EaLaVN~~~h~l~~~~~~~~~~L~-~ir~L~P~vvv~v 301 (434)
+-.=||-|| +.|.+++.+.. |++ ..+-++|.-+++.
T Consensus 123 -~~FDvV~cm-EVlEHv~dp~~-~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 123 -GQFDVVTCM-EVLEHVPDPES-FLRACAKLVKPGGILFL 159 (243)
T ss_pred -CCccEEEEh-hHHHccCCHHH-HHHHHHHHcCCCcEEEE
Confidence 212234454 23445555444 655 5577799876663
No 51
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=61.73 E-value=83 Score=32.02 Aligned_cols=106 Identities=15% Similarity=0.159 Sum_probs=54.2
Q ss_pred HHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHHHH-H--HHc--CCceEEeeeccCccc
Q 013903 178 IFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADF-A--MSL--GLPFDFNPLEGKIGN 252 (434)
Q Consensus 178 ILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~~f-A--~sl--gvpFeF~~V~~~~e~ 252 (434)
|+..+..-+.-+|+|+|.|.|.. ...++.+ |+- +++||+++...+.++ | +.. ..+.+|.. ..+++
T Consensus 114 l~~~l~~l~g~~VLDIGCG~G~~----~~~la~~--g~~--~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~--~d~e~ 183 (322)
T PRK15068 114 VLPHLSPLKGRTVLDVGCGNGYH----MWRMLGA--GAK--LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLP--LGIEQ 183 (322)
T ss_pred HHHhhCCCCCCEEEEeccCCcHH----HHHHHHc--CCC--EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEe--CCHHH
Confidence 34444322224799999999853 2344444 222 499999887655432 1 222 22344443 23344
Q ss_pred cccccccCCCCCceEEEe-cccccccccCCChHHHHHHHHhcCCCEEEEEe
Q 013903 253 IIDVSQLGVRPGETIVVH-WMHHCLYDITGSDLGTLRMLTLLRPKLITIVE 302 (434)
Q Consensus 253 l~~~~~L~~~~~EaLaVN-~~~h~l~~~~~~~~~~L~~ir~L~P~vvv~vE 302 (434)
+ .. -..=++++.+ .++| ..++...+-+.-+.|+|.-.++.+
T Consensus 184 l-p~----~~~FD~V~s~~vl~H----~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 184 L-PA----LKAFDTVFSMGVLYH----RRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred C-CC----cCCcCEEEECChhhc----cCCHHHHHHHHHHhcCCCcEEEEE
Confidence 3 11 0111344333 3444 233344444556888999777665
No 52
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=58.93 E-value=40 Score=32.74 Aligned_cols=173 Identities=18% Similarity=0.243 Sum_probs=55.3
Q ss_pred HHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHHHHH---HHcCC-ceEEeeeccCccc
Q 013903 177 AIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADFA---MSLGL-PFDFNPLEGKIGN 252 (434)
Q Consensus 177 AILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~~fA---~slgv-pFeF~~V~~~~e~ 252 (434)
.+++.+...+..+|+|++.|.|.-+..| +.+.+ |.-+|||++.+.+.|..-- +..|. ..+| +..+.
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l----~~~~~--~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~--v~~da-- 107 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTREL----ARRVG--PNGKVVGVDISPGMLEVARKKLKREGLQNIEF--VQGDA-- 107 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHH----GGGSS-----EEEEEES-HHHHHHHHHHHHHTT--SEEE--EE-BT--
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHH----HHHCC--CccEEEEecCCHHHHHHHHHHHHhhCCCCeeE--EEcCH--
Confidence 4455556666679999999999755444 44322 3459999999987554332 22333 3333 32323
Q ss_pred cccccccCCCCCc--eEEEecccccccccCCChHHHHHHHHhcCCCEEE-EEecCCCCCCChhHHHHHHHHHHHHHHH-H
Q 013903 253 IIDVSQLGVRPGE--TIVVHWMHHCLYDITGSDLGTLRMLTLLRPKLIT-IVEQDLSHGGSFLGRFVEALHYYSALFD-A 328 (434)
Q Consensus 253 l~~~~~L~~~~~E--aLaVN~~~h~l~~~~~~~~~~L~~ir~L~P~vvv-~vE~ea~~n~~F~~RF~eaL~yYsalFD-s 328 (434)
+.|...++. ++.+.+-+| ..++....+=...|-|+|.-.+ ++|-.-..| +++.. ...+|...+- -
T Consensus 108 ----~~lp~~d~sfD~v~~~fglr---n~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~-~~~~~---~~~~y~~~ilP~ 176 (233)
T PF01209_consen 108 ----EDLPFPDNSFDAVTCSFGLR---NFPDRERALREMYRVLKPGGRLVILEFSKPRN-PLLRA---LYKFYFKYILPL 176 (233)
T ss_dssp ----TB--S-TT-EEEEEEES-GG---G-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SS-HHHHH---HHHH--------
T ss_pred ----HHhcCCCCceeEEEHHhhHH---hhCCHHHHHHHHHHHcCCCeEEEEeeccCCCC-chhhc---eeeeeecccccc
Confidence 333444443 333333222 3333333444567889997644 445422222 23333 3334444221 1
Q ss_pred hhccCCCCChHHHHHHHHHhhhhhhhHHhhCCCCcccccccccHHHHHhcCCCeeccC
Q 013903 329 LGDGLGADSIERHTVEQQLFGCEIRNIVAVGGPKRTGEVKVERWGEELKRVGFRPVSL 386 (434)
Q Consensus 329 Lea~l~~~~~eR~~vE~~~lg~eI~niVAcEG~~R~ER~e~~~W~~rm~~AGF~~v~l 386 (434)
+..-+..+ +.. ..+|.+-|.+... .++=.+.|+.+||+.+..
T Consensus 177 ~g~l~~~~---~~~--Y~yL~~Si~~f~~-----------~~~~~~~l~~~Gf~~v~~ 218 (233)
T PF01209_consen 177 IGRLLSGD---REA--YRYLPESIRRFPS-----------PEELKELLEEAGFKNVEY 218 (233)
T ss_dssp ----------------------------------------------------------
T ss_pred cccccccc---ccc--ccccccccccccc-----------cccccccccccccccccc
Confidence 22222221 111 2345666664432 223456788999987755
No 53
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=58.75 E-value=51 Score=32.53 Aligned_cols=58 Identities=14% Similarity=0.197 Sum_probs=38.7
Q ss_pred hcCCCccchh-HhHhHHHH----hhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH
Q 013903 162 SICPLIKFSH-FTANQAIF----QALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE 228 (434)
Q Consensus 162 ~~sP~~kfa~-~tANqAIL----EA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~ 228 (434)
...|--++++ |..|+.|+ +.+.-.+.-+|+|+|.|.|. +-..|+.+ ++ ++|||+.+.+
T Consensus 13 ~~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~----lt~~L~~~--~~---~v~avE~d~~ 75 (272)
T PRK00274 13 GHRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGA----LTEPLLER--AA---KVTAVEIDRD 75 (272)
T ss_pred CCCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCccH----HHHHHHHh--CC---cEEEEECCHH
Confidence 4455555665 55565555 44443455689999999885 55666666 22 8999998876
No 54
>PRK04148 hypothetical protein; Provisional
Probab=58.26 E-value=28 Score=31.31 Aligned_cols=63 Identities=16% Similarity=0.260 Sum_probs=41.8
Q ss_pred HHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH-----------------------------
Q 013903 178 IFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE----------------------------- 228 (434)
Q Consensus 178 ILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~----------------------------- 228 (434)
|.+.+...+.-.|+|.|+|+|+.=. ..|++. | ..+|+|+.+.+
T Consensus 8 l~~~~~~~~~~kileIG~GfG~~vA---~~L~~~-G----~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~ 79 (134)
T PRK04148 8 IAENYEKGKNKKIVELGIGFYFKVA---KKLKES-G----FDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAK 79 (134)
T ss_pred HHHhcccccCCEEEEEEecCCHHHH---HHHHHC-C----CEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCC
Confidence 4555555455679999999886433 445432 2 37777764421
Q ss_pred -------------HHHHHHHHcCCceEEeeecc
Q 013903 229 -------------RLADFAMSLGLPFDFNPLEG 248 (434)
Q Consensus 229 -------------rL~~fA~slgvpFeF~~V~~ 248 (434)
-+.+.|++.|.++-+.++..
T Consensus 80 liysirpp~el~~~~~~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 80 LIYSIRPPRDLQPFILELAKKINVPLIIKPLSG 112 (134)
T ss_pred EEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 67788888888888888754
No 55
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=57.91 E-value=1.3e+02 Score=31.12 Aligned_cols=113 Identities=15% Similarity=0.098 Sum_probs=63.5
Q ss_pred hHHHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHH---HHHHHHcCCceEEeeeccCcc
Q 013903 175 NQAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERL---ADFAMSLGLPFDFNPLEGKIG 251 (434)
Q Consensus 175 NqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL---~~fA~slgvpFeF~~V~~~~e 251 (434)
...+++.+.....=+|+|+|.|.|. +-..++.+. |..++|+|+.+...| .+-++..++..++.. .+.
T Consensus 185 t~lLl~~l~~~~~g~VLDlGCG~G~----ls~~la~~~---p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~--~D~- 254 (342)
T PRK09489 185 SQLLLSTLTPHTKGKVLDVGCGAGV----LSAVLARHS---PKIRLTLSDVSAAALESSRATLAANGLEGEVFA--SNV- 254 (342)
T ss_pred HHHHHHhccccCCCeEEEeccCcCH----HHHHHHHhC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEE--ccc-
Confidence 3556666654333379999999997 344455442 356899999987622 223444566655543 111
Q ss_pred ccccccccCCCCCceEEEeccccccccc-CCChHHHHHH-HHhcCCCEEEEEe
Q 013903 252 NIIDVSQLGVRPGETIVVHWMHHCLYDI-TGSDLGTLRM-LTLLRPKLITIVE 302 (434)
Q Consensus 252 ~l~~~~~L~~~~~EaLaVN~~~h~l~~~-~~~~~~~L~~-ir~L~P~vvv~vE 302 (434)
+ + .+ -.+=+.++.|-.+|..... ......|++. .+.|+|.-..++.
T Consensus 255 -~-~--~~-~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 255 -F-S--DI-KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred -c-c--cc-CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 1 1 11 1233678888665532221 1223566654 5678998766553
No 56
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=57.61 E-value=55 Score=33.90 Aligned_cols=97 Identities=12% Similarity=0.097 Sum_probs=51.1
Q ss_pred CeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHHHHHHHcCC-ceEEeeeccCccccccccccCCCC-
Q 013903 186 DCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADFAMSLGL-PFDFNPLEGKIGNIIDVSQLGVRP- 263 (434)
Q Consensus 186 ~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~~fA~slgv-pFeF~~V~~~~e~l~~~~~L~~~~- 263 (434)
...+|+|+|.|.|.-.. .++.+.+ ..++|+++.+.+.|....+.... .++| +..+.+++ ...+
T Consensus 113 ~~~~VLDLGcGtG~~~l----~La~~~~---~~~VtgVD~S~~mL~~A~~k~~~~~i~~--i~gD~e~l------p~~~~ 177 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTL----GIVKHVD---AKNVTILDQSPHQLAKAKQKEPLKECKI--IEGDAEDL------PFPTD 177 (340)
T ss_pred CCCEEEEEecCCcHHHH----HHHHHCC---CCEEEEEECCHHHHHHHHHhhhccCCeE--EeccHHhC------CCCCC
Confidence 45689999999997433 3343322 15899999887644433222211 1222 33333332 2222
Q ss_pred -CceEEEecccccccccCCChHHHHH-HHHhcCCCEEEEE
Q 013903 264 -GETIVVHWMHHCLYDITGSDLGTLR-MLTLLRPKLITIV 301 (434)
Q Consensus 264 -~EaLaVN~~~h~l~~~~~~~~~~L~-~ir~L~P~vvv~v 301 (434)
=++++.|..+|.+. + .+.+|+ ..+.|+|.-.+++
T Consensus 178 sFDvVIs~~~L~~~~---d-~~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 178 YADRYVSAGSIEYWP---D-PQRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred ceeEEEEcChhhhCC---C-HHHHHHHHHHhcCCCcEEEE
Confidence 24565554333222 2 344554 5578899876654
No 57
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=57.43 E-value=1.3e+02 Score=26.98 Aligned_cols=44 Identities=18% Similarity=0.233 Sum_probs=30.7
Q ss_pred HHHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH
Q 013903 176 QAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE 228 (434)
Q Consensus 176 qAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~ 228 (434)
+.|++.+.-...=+|+|+|.|.|. |...|+.+ + -++|+|+.+.+
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~----lt~~l~~~-~----~~v~~vE~~~~ 46 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGA----LTEELLER-A----ARVTAIEIDPR 46 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccH----HHHHHHhc-C----CeEEEEECCHH
Confidence 346666653344489999999886 55556666 2 38999998876
No 58
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=56.94 E-value=1e+02 Score=31.93 Aligned_cols=95 Identities=20% Similarity=0.153 Sum_probs=56.6
Q ss_pred EEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH---HHHHHHHHcCCc-eEEeeeccCccccccccccCCCCC
Q 013903 189 HIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE---RLADFAMSLGLP-FDFNPLEGKIGNIIDVSQLGVRPG 264 (434)
Q Consensus 189 HIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~---rL~~fA~slgvp-FeF~~V~~~~e~l~~~~~L~~~~~ 264 (434)
+|+|++.|.|. +--.||.+ + -+++||+.+.+ ...+-|+..|+. .+| +..+.++.. .. + ...-
T Consensus 236 ~vLDL~cG~G~----~~l~la~~-~----~~v~~vE~~~~av~~a~~N~~~~~~~~~~~--~~~d~~~~~-~~-~-~~~~ 301 (374)
T TIGR02085 236 QMWDLFCGVGG----FGLHCAGP-D----TQLTGIEIESEAIACAQQSAQMLGLDNLSF--AALDSAKFA-TA-Q-MSAP 301 (374)
T ss_pred EEEEccCCccH----HHHHHhhc-C----CeEEEEECCHHHHHHHHHHHHHcCCCcEEE--EECCHHHHH-Hh-c-CCCC
Confidence 68999998883 33344433 2 37999998876 334445666774 444 333333321 11 1 1123
Q ss_pred ceEEEecccccccccCCChHHHHHHHHhcCCCEEEEEec
Q 013903 265 ETIVVHWMHHCLYDITGSDLGTLRMLTLLRPKLITIVEQ 303 (434)
Q Consensus 265 EaLaVN~~~h~l~~~~~~~~~~L~~ir~L~P~vvv~vE~ 303 (434)
+++++|=. . .+-...++..|..++|+-+|.++-
T Consensus 302 D~vi~DPP-----r-~G~~~~~l~~l~~~~p~~ivyvsc 334 (374)
T TIGR02085 302 ELVLVNPP-----R-RGIGKELCDYLSQMAPKFILYSSC 334 (374)
T ss_pred CEEEECCC-----C-CCCcHHHHHHHHhcCCCeEEEEEe
Confidence 57777722 1 244568889999999988888763
No 59
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=56.21 E-value=95 Score=31.70 Aligned_cols=95 Identities=17% Similarity=0.119 Sum_probs=51.9
Q ss_pred CeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHHH---HHHHc------CCceEEeeeccCccccccc
Q 013903 186 DCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLAD---FAMSL------GLPFDFNPLEGKIGNIIDV 256 (434)
Q Consensus 186 ~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~~---fA~sl------gvpFeF~~V~~~~e~l~~~ 256 (434)
+...|+|+|.|.|. +...|+.+ + .+||||+.+.+.|.. -++.. +...+|... +++++ +
T Consensus 144 ~~~~VLDlGcGtG~----~a~~la~~-g----~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~--Dl~~l-~- 210 (315)
T PLN02585 144 AGVTVCDAGCGTGS----LAIPLALE-G----AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAN--DLESL-S- 210 (315)
T ss_pred CCCEEEEecCCCCH----HHHHHHHC-C----CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEc--chhhc-C-
Confidence 45689999999987 44555544 2 489999988873322 22222 123444431 22222 1
Q ss_pred cccCCCCCceEEE-ecccccccccCCChHHHHHHHHhcCCCEEEEE
Q 013903 257 SQLGVRPGETIVV-HWMHHCLYDITGSDLGTLRMLTLLRPKLITIV 301 (434)
Q Consensus 257 ~~L~~~~~EaLaV-N~~~h~l~~~~~~~~~~L~~ir~L~P~vvv~v 301 (434)
..=+.++. ..++|. .+ .....+++.++.+.|..+++.
T Consensus 211 -----~~fD~Vv~~~vL~H~-p~--~~~~~ll~~l~~l~~g~liIs 248 (315)
T PLN02585 211 -----GKYDTVTCLDVLIHY-PQ--DKADGMIAHLASLAEKRLIIS 248 (315)
T ss_pred -----CCcCEEEEcCEEEec-CH--HHHHHHHHHHHhhcCCEEEEE
Confidence 11123332 234452 11 234567888888888888774
No 60
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=55.78 E-value=78 Score=29.68 Aligned_cols=105 Identities=10% Similarity=0.044 Sum_probs=55.4
Q ss_pred CeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH---HHHHHHHHcCC-ceEEeeeccCc-cccccccccC
Q 013903 186 DCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE---RLADFAMSLGL-PFDFNPLEGKI-GNIIDVSQLG 260 (434)
Q Consensus 186 ~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~---rL~~fA~slgv-pFeF~~V~~~~-e~l~~~~~L~ 260 (434)
+.-.|+|+|.|.|.-...|.+ +. |.-++|||+.+.+ .+.+-++..++ +++| +..+. +.+ . ..+.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~----~~---p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~--~~~d~~~~l-~-~~~~ 108 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAK----AN---PDINFIGIEVHEPGVGKALKKIEEEGLTNLRL--LCGDAVEVL-L-DMFP 108 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHH----HC---CCccEEEEEechHHHHHHHHHHHHcCCCCEEE--EecCHHHHH-H-HHcC
Confidence 446799999999976554433 31 3468999999887 44444444554 2444 33333 333 1 0111
Q ss_pred CCCCceEEEecccccc---cc-cCCChHHHHHHH-HhcCCCEEEEE
Q 013903 261 VRPGETIVVHWMHHCL---YD-ITGSDLGTLRML-TLLRPKLITIV 301 (434)
Q Consensus 261 ~~~~EaLaVN~~~h~l---~~-~~~~~~~~L~~i-r~L~P~vvv~v 301 (434)
-..=+.+++|...... ++ .......+|+.+ +-|+|.-+++.
T Consensus 109 ~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i 154 (202)
T PRK00121 109 DGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHF 154 (202)
T ss_pred ccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEE
Confidence 1112455555321100 00 001246777765 58899776654
No 61
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=53.71 E-value=95 Score=23.46 Aligned_cols=100 Identities=23% Similarity=0.194 Sum_probs=50.0
Q ss_pred EEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH--HHHHHHHHcCCceEEeeeccCccccccccccCCCCCce
Q 013903 189 HIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE--RLADFAMSLGLPFDFNPLEGKIGNIIDVSQLGVRPGET 266 (434)
Q Consensus 189 HIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~--rL~~fA~slgvpFeF~~V~~~~e~l~~~~~L~~~~~Ea 266 (434)
+|+|+|.+.|. +...++. .+..++++++.+.+ ...+-....+-.-....+..++.+. .......-+.
T Consensus 1 ~ildig~G~G~----~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~ 69 (107)
T cd02440 1 RVLDLGCGTGA----LALALAS----GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEEL---PPEADESFDV 69 (107)
T ss_pred CeEEEcCCccH----HHHHHhc----CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhh---ccccCCceEE
Confidence 47899988874 4455544 24579999998775 2222111222222222233333222 1111122346
Q ss_pred EEEecccccccccCCChHHHHHH-HHhcCCCEEEEEe
Q 013903 267 IVVHWMHHCLYDITGSDLGTLRM-LTLLRPKLITIVE 302 (434)
Q Consensus 267 LaVN~~~h~l~~~~~~~~~~L~~-ir~L~P~vvv~vE 302 (434)
+++|...+.. ......+++. .+.++|.-.+++.
T Consensus 70 i~~~~~~~~~---~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 70 IISDPPLHHL---VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred EEEccceeeh---hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 6666543321 2334566655 4567888777654
No 62
>PRK06922 hypothetical protein; Provisional
Probab=52.35 E-value=59 Score=36.79 Aligned_cols=103 Identities=19% Similarity=0.280 Sum_probs=54.7
Q ss_pred eEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHHHHH---HHcCCceEEeeeccCccccccccccCCCCC
Q 013903 188 VHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADFA---MSLGLPFDFNPLEGKIGNIIDVSQLGVRPG 264 (434)
Q Consensus 188 VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~~fA---~slgvpFeF~~V~~~~e~l~~~~~L~~~~~ 264 (434)
-.|+|+|.|.|. +...|+.+. |..++|||+.+...|.... ...|.++++ +..+..++ +..+.-.+=
T Consensus 420 ~rVLDIGCGTG~----ls~~LA~~~---P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~--I~gDa~dL--p~~fedeSF 488 (677)
T PRK06922 420 DTIVDVGAGGGV----MLDMIEEET---EDKRIYGIDISENVIDTLKKKKQNEGRSWNV--IKGDAINL--SSSFEKESV 488 (677)
T ss_pred CEEEEeCCCCCH----HHHHHHHhC---CCCEEEEEECCHHHHHHHHHHhhhcCCCeEE--EEcchHhC--ccccCCCCE
Confidence 479999999984 445566542 4679999999887443332 233444443 32222222 111111122
Q ss_pred ceEEEecc-cccccccC--------CChHHHHHH-HHhcCCCEEEEE
Q 013903 265 ETIVVHWM-HHCLYDIT--------GSDLGTLRM-LTLLRPKLITIV 301 (434)
Q Consensus 265 EaLaVN~~-~h~l~~~~--------~~~~~~L~~-ir~L~P~vvv~v 301 (434)
+.++.|+. |+++...+ .....+|+. .+.|+|.-.+++
T Consensus 489 DvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII 535 (677)
T PRK06922 489 DTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIII 535 (677)
T ss_pred EEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEE
Confidence 45666654 33322111 123556654 488999855544
No 63
>PRK04457 spermidine synthase; Provisional
Probab=52.32 E-value=1.4e+02 Score=29.42 Aligned_cols=102 Identities=18% Similarity=0.162 Sum_probs=55.4
Q ss_pred EEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHHHHHHHcCCce---EEeeeccCccccccccccCCCCCc
Q 013903 189 HIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADFAMSLGLPF---DFNPLEGKIGNIIDVSQLGVRPGE 265 (434)
Q Consensus 189 HIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~~fA~slgvpF---eF~~V~~~~e~l~~~~~L~~~~~E 265 (434)
+|+|+|.|.|. +...|+.+. |..+||+|+.+.+.+.-.-+.++.+- .++.+..+..+... .. -..-+
T Consensus 69 ~vL~IG~G~G~----l~~~l~~~~---p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~--~~-~~~yD 138 (262)
T PRK04457 69 HILQIGLGGGS----LAKFIYTYL---PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIA--VH-RHSTD 138 (262)
T ss_pred EEEEECCCHhH----HHHHHHHhC---CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHH--hC-CCCCC
Confidence 68999998875 444454442 56899999988873332223345432 23333332222100 11 12346
Q ss_pred eEEEecccccccccCC--ChHHHHHHH-HhcCCCEEEEEe
Q 013903 266 TIVVHWMHHCLYDITG--SDLGTLRML-TLLRPKLITIVE 302 (434)
Q Consensus 266 aLaVN~~~h~l~~~~~--~~~~~L~~i-r~L~P~vvv~vE 302 (434)
+++++..... ..+. ....|++.+ +.|+|.-++++.
T Consensus 139 ~I~~D~~~~~--~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 139 VILVDGFDGE--GIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred EEEEeCCCCC--CCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 8888743210 1111 125777665 559999988874
No 64
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=50.42 E-value=1.6e+02 Score=29.67 Aligned_cols=97 Identities=19% Similarity=0.117 Sum_probs=58.4
Q ss_pred eeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH---HHHHHHHHcCCc-eEEeeeccCccccccccccCCC
Q 013903 187 CVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE---RLADFAMSLGLP-FDFNPLEGKIGNIIDVSQLGVR 262 (434)
Q Consensus 187 ~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~---rL~~fA~slgvp-FeF~~V~~~~e~l~~~~~L~~~ 262 (434)
.-+|+|++.|.|. +--.||.+ + -+++||+.+.+ ...+-|+..|++ .+|.. .+..++. .. . ..
T Consensus 174 ~~~VLDl~cG~G~----~sl~la~~-~----~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~--~D~~~~~-~~-~-~~ 239 (315)
T PRK03522 174 PRSMWDLFCGVGG----FGLHCATP-G----MQLTGIEISAEAIACAKQSAAELGLTNVQFQA--LDSTQFA-TA-Q-GE 239 (315)
T ss_pred CCEEEEccCCCCH----HHHHHHhc-C----CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEE--cCHHHHH-Hh-c-CC
Confidence 3589999999986 33445543 2 37999998876 334456667774 55543 3333331 11 1 11
Q ss_pred CCceEEEecccccccccCCChHHHHHHHHhcCCCEEEEEec
Q 013903 263 PGETIVVHWMHHCLYDITGSDLGTLRMLTLLRPKLITIVEQ 303 (434)
Q Consensus 263 ~~EaLaVN~~~h~l~~~~~~~~~~L~~ir~L~P~vvv~vE~ 303 (434)
.-+.+++|=. ..+-...++..+.+++|+-++.+.-
T Consensus 240 ~~D~Vv~dPP------r~G~~~~~~~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 240 VPDLVLVNPP------RRGIGKELCDYLSQMAPRFILYSSC 274 (315)
T ss_pred CCeEEEECCC------CCCccHHHHHHHHHcCCCeEEEEEC
Confidence 2357777621 1233457778899999998887643
No 65
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=48.79 E-value=2e+02 Score=27.88 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=31.4
Q ss_pred HHHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH
Q 013903 176 QAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE 228 (434)
Q Consensus 176 qAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~ 228 (434)
+.|++++...+.=.|+|+|.|.|. |-..|+.+. + ++++|+.+.+
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G~----lt~~L~~~~--~---~v~~iE~d~~ 62 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLGA----LTEPLLKRA--K---KVTAIEIDPR 62 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCCH----HHHHHHHhC--C---cEEEEECCHH
Confidence 456666655556689999999987 556666653 2 3999998876
No 66
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=47.00 E-value=2.4e+02 Score=26.86 Aligned_cols=106 Identities=15% Similarity=0.176 Sum_probs=61.5
Q ss_pred HHHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH---HHHHHHHHcCCceEEeeeccCccc
Q 013903 176 QAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE---RLADFAMSLGLPFDFNPLEGKIGN 252 (434)
Q Consensus 176 qAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~---rL~~fA~slgvpFeF~~V~~~~e~ 252 (434)
..+++|++--+.-.++|+|.|.|.= + --||++ -..+|+++.+.. +|.+.|+.-+++.+.... ++++
T Consensus 20 s~v~~a~~~~~~g~~LDlgcG~GRN--a--lyLA~~-----G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~--Dl~~ 88 (192)
T PF03848_consen 20 SEVLEAVPLLKPGKALDLGCGEGRN--A--LYLASQ-----GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVA--DLND 88 (192)
T ss_dssp HHHHHHCTTS-SSEEEEES-TTSHH--H--HHHHHT-----T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE---BGCC
T ss_pred HHHHHHHhhcCCCcEEEcCCCCcHH--H--HHHHHC-----CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEe--cchh
Confidence 4477777766677899999999863 1 124444 368999998875 899999999999766643 2222
Q ss_pred cccccccCCCCCce-EEEe-cccccccccCCChHHHHHHH-HhcCCCEEEEE
Q 013903 253 IIDVSQLGVRPGET-IVVH-WMHHCLYDITGSDLGTLRML-TLLRPKLITIV 301 (434)
Q Consensus 253 l~~~~~L~~~~~Ea-LaVN-~~~h~l~~~~~~~~~~L~~i-r~L~P~vvv~v 301 (434)
. .+. ++. ++|. .+++.|. +..+..+++.+ ..++|.-+.+.
T Consensus 89 ~------~~~-~~yD~I~st~v~~fL~--~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 89 F------DFP-EEYDFIVSTVVFMFLQ--RELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp B------S-T-TTEEEEEEESSGGGS---GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred c------ccc-CCcCEEEEEEEeccCC--HHHHHHHHHHHHhhcCCcEEEEE
Confidence 2 221 221 3333 2332232 23456777666 56799755443
No 67
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=46.67 E-value=1.9e+02 Score=30.57 Aligned_cols=106 Identities=18% Similarity=0.178 Sum_probs=58.4
Q ss_pred hhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH---HHHHHHHHcCCc-eEEeeeccCcccccc
Q 013903 180 QALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE---RLADFAMSLGLP-FDFNPLEGKIGNIID 255 (434)
Q Consensus 180 EA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~---rL~~fA~slgvp-FeF~~V~~~~e~l~~ 255 (434)
+.+.-.+.-+|+|+|.|.|. +--.||.+. -+++||+.+.+ ...+-|+..|+. .+|. ..++.+...
T Consensus 291 ~~l~~~~~~~VLDlgcGtG~----~sl~la~~~-----~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~--~~d~~~~l~ 359 (443)
T PRK13168 291 EWLDPQPGDRVLDLFCGLGN----FTLPLARQA-----AEVVGVEGVEAMVERARENARRNGLDNVTFY--HANLEEDFT 359 (443)
T ss_pred HHhcCCCCCEEEEEeccCCH----HHHHHHHhC-----CEEEEEeCCHHHHHHHHHHHHHcCCCceEEE--EeChHHhhh
Confidence 33333344689999999996 333455542 38999998887 223344555663 4443 333322210
Q ss_pred ccccCCCCCceEEEecccccccccCCChHHHHHHHHhcCCCEEEEEec
Q 013903 256 VSQLGVRPGETIVVHWMHHCLYDITGSDLGTLRMLTLLRPKLITIVEQ 303 (434)
Q Consensus 256 ~~~L~~~~~EaLaVN~~~h~l~~~~~~~~~~L~~ir~L~P~vvv~vE~ 303 (434)
...+.-..-++|++|=-. .+ ...++..+.+++|+-++.+.-
T Consensus 360 ~~~~~~~~fD~Vi~dPPr------~g-~~~~~~~l~~~~~~~ivyvSC 400 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPR------AG-AAEVMQALAKLGPKRIVYVSC 400 (443)
T ss_pred hhhhhcCCCCEEEECcCC------cC-hHHHHHHHHhcCCCeEEEEEe
Confidence 000111112566665211 12 356778889999999888753
No 68
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=46.55 E-value=1.2e+02 Score=28.20 Aligned_cols=108 Identities=9% Similarity=0.070 Sum_probs=56.2
Q ss_pred eeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHH---HHHHHHHcCCceEEeeeccCccccccccccCCCC
Q 013903 187 CVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSER---LADFAMSLGLPFDFNPLEGKIGNIIDVSQLGVRP 263 (434)
Q Consensus 187 ~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~r---L~~fA~slgvpFeF~~V~~~~e~l~~~~~L~~~~ 263 (434)
.-.|+|+|.|.|.= +-.||.+. |...++||+.+.+. ..+-++..|+. ..+.+..+..++. ...+.-..
T Consensus 17 ~~~ilDiGcG~G~~----~~~la~~~---p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~-~~~~~~~~ 87 (194)
T TIGR00091 17 APLHLEIGCGKGRF----LIDMAKQN---PDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELL-DKFFPDGS 87 (194)
T ss_pred CceEEEeCCCccHH----HHHHHHhC---CCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHH-HhhCCCCc
Confidence 34799999998864 44555442 45689999998773 33445556664 3344444433331 11111001
Q ss_pred CceEEEecccccccccC----CChHHHHHHH-HhcCCCEEEEEec
Q 013903 264 GETIVVHWMHHCLYDIT----GSDLGTLRML-TLLRPKLITIVEQ 303 (434)
Q Consensus 264 ~EaLaVN~~~h~l~~~~----~~~~~~L~~i-r~L~P~vvv~vE~ 303 (434)
=+.+.+|+-..-..... -....||+.+ +.|+|.-.+.+..
T Consensus 88 ~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 88 LSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred eeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 13555564210000000 0125677754 7789988776644
No 69
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=44.94 E-value=2.1e+02 Score=29.43 Aligned_cols=145 Identities=13% Similarity=0.099 Sum_probs=84.1
Q ss_pred HHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHHHHHHHcC---Cc-eEEeeeccCccc
Q 013903 177 AIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADFAMSLG---LP-FDFNPLEGKIGN 252 (434)
Q Consensus 177 AILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~~fA~slg---vp-FeF~~V~~~~e~ 252 (434)
.|...+. ....|||||.|.|..=..|+++|... +. ..+-.+|+-+.+-|.+-++.+. .| .++++|.....+
T Consensus 69 ~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~-~~--~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 69 DIAASIP--SGSMLVELGSGNLRKVGILLEALERQ-KK--SVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDD 143 (319)
T ss_pred HHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhc-CC--CceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHH
Confidence 4445553 23479999999999999999999732 22 3677999999886666666554 34 677777654333
Q ss_pred cccccccCC--CCCceEEEecccccccc-cCCChHHHHHHHHh--cCCCEEEEEecCCCC---------CC--C-hhHHH
Q 013903 253 IIDVSQLGV--RPGETIVVHWMHHCLYD-ITGSDLGTLRMLTL--LRPKLITIVEQDLSH---------GG--S-FLGRF 315 (434)
Q Consensus 253 l~~~~~L~~--~~~EaLaVN~~~h~l~~-~~~~~~~~L~~ir~--L~P~vvv~vE~ea~~---------n~--~-F~~RF 315 (434)
.. ..|.- .++...+|-++=..+.. .+.....||+.+++ |+|.-..++--|... |. . .....
T Consensus 144 ~l--~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~d~~gvTa~Fn 221 (319)
T TIGR03439 144 GL--AWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYNDPGGVTRRFV 221 (319)
T ss_pred HH--hhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhcCCcchhHHHH
Confidence 21 11110 11222233222111111 12234689999987 899777766555432 22 2 34444
Q ss_pred HHHHHHHHHHHHH
Q 013903 316 VEALHYYSALFDA 328 (434)
Q Consensus 316 ~eaL~yYsalFDs 328 (434)
.+.|.+--..+++
T Consensus 222 lN~L~~~Nr~Lg~ 234 (319)
T TIGR03439 222 LNGLVHANEILGS 234 (319)
T ss_pred HHHHHHHHHHhCc
Confidence 6677777766654
No 70
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=44.91 E-value=1.1e+02 Score=30.00 Aligned_cols=83 Identities=13% Similarity=0.187 Sum_probs=45.7
Q ss_pred cchHHHHHHHHHHHhcCCCccchhHhHhHHHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCCh
Q 013903 148 SQSQKIFNALQSYNSICPLIKFSHFTANQAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSS 227 (434)
Q Consensus 148 ~~~~~~~~A~~~f~~~sP~~kfa~~tANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~ 227 (434)
....+++.+.+.|.+..=|-.+.. ..++.|.+.+. .+.-+|+|+|.|.|.--..|.+.+... ....++||+.+.
T Consensus 49 ~d~~~~~~ar~~fl~~g~y~~l~~-~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~----~~~~v~giD~s~ 122 (272)
T PRK11088 49 GDNKEMMQARRAFLDAGHYQPLRD-AVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEI----TTMQLFGLDISK 122 (272)
T ss_pred CcCHHHHHHHHHHHHCCChHHHHH-HHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccc----cCCeEEEECCCH
Confidence 355677888887766432222221 12222333332 344679999999997444444433211 125799999988
Q ss_pred HHHHHHHHH
Q 013903 228 ERLADFAMS 236 (434)
Q Consensus 228 ~rL~~fA~s 236 (434)
+.+..-++.
T Consensus 123 ~~l~~A~~~ 131 (272)
T PRK11088 123 VAIKYAAKR 131 (272)
T ss_pred HHHHHHHHh
Confidence 755443443
No 71
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=44.61 E-value=1.3e+02 Score=25.87 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=28.5
Q ss_pred CCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHHH
Q 013903 184 GADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLAD 232 (434)
Q Consensus 184 g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~~ 232 (434)
..+.-.|+|+|.|.| . +...|+.+ |. ++||++.+...+..
T Consensus 20 ~~~~~~vLDiGcG~G-~---~~~~l~~~--~~---~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTG-S---FLRALAKR--GF---EVTGVDISPQMIEK 59 (161)
T ss_dssp TTTTSEEEEESSTTS-H---HHHHHHHT--TS---EEEEEESSHHHHHH
T ss_pred cCCCCEEEEEcCCCC-H---HHHHHHHh--CC---EEEEEECCHHHHhh
Confidence 355669999999999 3 44555544 22 99999998875544
No 72
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=44.49 E-value=2.3e+02 Score=28.77 Aligned_cols=113 Identities=14% Similarity=0.113 Sum_probs=68.8
Q ss_pred hHhHhHHHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH---HHHHHHHHcCCceEEeeec
Q 013903 171 HFTANQAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE---RLADFAMSLGLPFDFNPLE 247 (434)
Q Consensus 171 ~~tANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~---rL~~fA~slgvpFeF~~V~ 247 (434)
.+..-..|++-+.=+.--||.|+|.| |-+|+.-.|.+-+ .++|||.-+.+ ...+-++..|++=..+.+.
T Consensus 57 Q~~k~~~~~~kl~L~~G~~lLDiGCG----WG~l~~~aA~~y~----v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l 128 (283)
T COG2230 57 QRAKLDLILEKLGLKPGMTLLDIGCG----WGGLAIYAAEEYG----VTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRL 128 (283)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCC----hhHHHHHHHHHcC----CEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEe
Confidence 33444556666666677899999654 7789999998864 69999998876 4455577788873333333
Q ss_pred cCccccccccccCCCCCceEEEecccccccccCCChHHHHHHHH-hcCCCEEEE
Q 013903 248 GKIGNIIDVSQLGVRPGETIVVHWMHHCLYDITGSDLGTLRMLT-LLRPKLITI 300 (434)
Q Consensus 248 ~~~e~l~~~~~L~~~~~EaLaVN~~~h~l~~~~~~~~~~L~~ir-~L~P~vvv~ 300 (434)
..+.++. .. -|-+|.|=...|. ....-+.|++.++ -|+|+-..+
T Consensus 129 ~d~rd~~-e~-----fDrIvSvgmfEhv---g~~~~~~ff~~~~~~L~~~G~~l 173 (283)
T COG2230 129 QDYRDFE-EP-----FDRIVSVGMFEHV---GKENYDDFFKKVYALLKPGGRML 173 (283)
T ss_pred ccccccc-cc-----cceeeehhhHHHh---CcccHHHHHHHHHhhcCCCceEE
Confidence 3444441 11 2334444333332 1234678888875 467765544
No 73
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=42.83 E-value=3.4e+02 Score=26.72 Aligned_cols=185 Identities=16% Similarity=0.193 Sum_probs=101.4
Q ss_pred CCCccch-hHhHhHHHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHHH---HHHHcCC
Q 013903 164 CPLIKFS-HFTANQAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLAD---FAMSLGL 239 (434)
Q Consensus 164 sP~~kfa-~~tANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~~---fA~slgv 239 (434)
.+++.|+ |.+=+++..+.+.-.+--+|+|.+.|.|-. .-.|++.-+ .-+|||++.+...|.. -+...|+
T Consensus 28 n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~----a~~~~k~~g---~g~v~~~D~s~~ML~~a~~k~~~~~~ 100 (238)
T COG2226 28 NDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDM----ALLLAKSVG---TGEVVGLDISESMLEVAREKLKKKGV 100 (238)
T ss_pred cccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHH----HHHHHHhcC---CceEEEEECCHHHHHHHHHHhhccCc
Confidence 4566665 556677777776544788999999988853 333444433 7899999999885543 3334444
Q ss_pred ceEEeeeccCccccccccccCCCCC--ceEEEecccccccccCCChHHHHH-HHHhcCCCEEEEEecCCCCCCChhHHHH
Q 013903 240 PFDFNPLEGKIGNIIDVSQLGVRPG--ETIVVHWMHHCLYDITGSDLGTLR-MLTLLRPKLITIVEQDLSHGGSFLGRFV 316 (434)
Q Consensus 240 pFeF~~V~~~~e~l~~~~~L~~~~~--EaLaVN~~~h~l~~~~~~~~~~L~-~ir~L~P~vvv~vE~ea~~n~~F~~RF~ 316 (434)
.- +.-|..+.++| ...++ +++.+.+.+|... ..+..|+ +-|=|+|...+++-.=.....+- |.
T Consensus 101 ~~-i~fv~~dAe~L------Pf~D~sFD~vt~~fglrnv~----d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~---~~ 166 (238)
T COG2226 101 QN-VEFVVGDAENL------PFPDNSFDAVTISFGLRNVT----DIDKALKEMYRVLKPGGRLLVLEFSKPDNPV---LR 166 (238)
T ss_pred cc-eEEEEechhhC------CCCCCccCEEEeeehhhcCC----CHHHHHHHHHHhhcCCeEEEEEEcCCCCchh---hH
Confidence 32 44444433443 44444 4565555444333 3566664 55788999977664333333322 22
Q ss_pred HHHH-HHHH-HHHHhhccCCCCChHHHHHHHHHhhhhhhhHHhhCCCCcccccccccHHHHHhcCCCeecc
Q 013903 317 EALH-YYSA-LFDALGDGLGADSIERHTVEQQLFGCEIRNIVAVGGPKRTGEVKVERWGEELKRVGFRPVS 385 (434)
Q Consensus 317 eaL~-yYsa-lFDsLea~l~~~~~eR~~vE~~~lg~eI~niVAcEG~~R~ER~e~~~W~~rm~~AGF~~v~ 385 (434)
..++ ||.. ++=.+......+..+.. ++..-|+... ..+.=...|..+||..+.
T Consensus 167 ~~~~~~~~~~v~P~~g~~~~~~~~~y~-----yL~eSi~~~p-----------~~~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 167 KAYILYYFKYVLPLIGKLVAKDAEAYE-----YLAESIRRFP-----------DQEELKQMIEKAGFEEVR 221 (238)
T ss_pred HHHHHHHHHhHhhhhceeeecChHHHH-----HHHHHHHhCC-----------CHHHHHHHHHhcCceEEe
Confidence 2333 4444 55555543332333222 3343444221 133455567778888765
No 74
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=42.08 E-value=1.9e+02 Score=26.87 Aligned_cols=34 Identities=18% Similarity=0.129 Sum_probs=23.6
Q ss_pred CeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH
Q 013903 186 DCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE 228 (434)
Q Consensus 186 ~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~ 228 (434)
..-+|+|+|.|.|.- ...|+.+ + .++||++.+..
T Consensus 63 ~~~~vLDvGcG~G~~----~~~l~~~--~---~~v~~~D~s~~ 96 (230)
T PRK07580 63 TGLRILDAGCGVGSL----SIPLARR--G---AKVVASDISPQ 96 (230)
T ss_pred CCCEEEEEeCCCCHH----HHHHHHc--C---CEEEEEECCHH
Confidence 456899999999863 3344443 2 24999998876
No 75
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=41.57 E-value=2.2e+02 Score=27.03 Aligned_cols=112 Identities=20% Similarity=0.238 Sum_probs=59.2
Q ss_pred HHHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHHHHHHHcCCceEEeeeccCcccccc
Q 013903 176 QAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADFAMSLGLPFDFNPLEGKIGNIID 255 (434)
Q Consensus 176 qAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~~fA~slgvpFeF~~V~~~~e~l~~ 255 (434)
..++++..=...-+|||+|-+.|. +..+|+.+. |.+|+|..+.+.- .+.|+. .=..+|.+- ++.
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~----~~~~l~~~~---P~l~~~v~Dlp~v--~~~~~~-~~rv~~~~g-----d~f- 153 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGH----FAIALARAY---PNLRATVFDLPEV--IEQAKE-ADRVEFVPG-----DFF- 153 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSH----HHHHHHHHS---TTSEEEEEE-HHH--HCCHHH-TTTEEEEES------TT-
T ss_pred hhhhccccccCccEEEeccCcchH----HHHHHHHHC---CCCcceeeccHhh--hhcccc-ccccccccc-----cHH-
Confidence 456666665555689999999994 334444332 6789999886542 222222 333444431 111
Q ss_pred ccccCCCCCceEEEecccccccccCCChHHHHHHH-HhcCCC---EEEEEecCCCCC
Q 013903 256 VSQLGVRPGETIVVHWMHHCLYDITGSDLGTLRML-TLLRPK---LITIVEQDLSHG 308 (434)
Q Consensus 256 ~~~L~~~~~EaLaVN~~~h~l~~~~~~~~~~L~~i-r~L~P~---vvv~vE~ea~~n 308 (434)
+.+.. .+++.+..++|...+ .....+|+.+ +.|+|. .++|+|.=.+..
T Consensus 154 -~~~P~--~D~~~l~~vLh~~~d--~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 154 -DPLPV--ADVYLLRHVLHDWSD--EDCVKILRNAAAALKPGKDGRLLIIEMVLPDD 205 (241)
T ss_dssp -TCCSS--ESEEEEESSGGGS-H--HHHHHHHHHHHHHSEECTTEEEEEEEEEECSS
T ss_pred -hhhcc--ccceeeehhhhhcch--HHHHHHHHHHHHHhCCCCCCeEEEEeeccCCC
Confidence 11222 445555544333222 2334567655 778887 777777654444
No 76
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=40.97 E-value=2.8e+02 Score=25.22 Aligned_cols=104 Identities=14% Similarity=0.156 Sum_probs=54.8
Q ss_pred HHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH---HHHHHHHHcCCceEEeeeccCccccc
Q 013903 178 IFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE---RLADFAMSLGLPFDFNPLEGKIGNII 254 (434)
Q Consensus 178 ILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~---rL~~fA~slgvpFeF~~V~~~~e~l~ 254 (434)
+++.+.-.+.-.|+|+|.|.|.- --.++.+ + |..++|+|+.+.+ .+.+-++..+++ .++.+..+....
T Consensus 23 ~~~~l~~~~~~~vLDiG~G~G~~----~~~la~~--~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~~- 93 (187)
T PRK08287 23 ALSKLELHRAKHLIDVGAGTGSV----SIEAALQ--F-PSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPIE- 93 (187)
T ss_pred HHHhcCCCCCCEEEEECCcCCHH----HHHHHHH--C-CCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchhh-
Confidence 33444323334799999998843 3333433 1 3578999999876 444455566653 223232222111
Q ss_pred cccccCCCCCceEEEecccccccccCCChHHHHH-HHHhcCCCEEEEEe
Q 013903 255 DVSQLGVRPGETIVVHWMHHCLYDITGSDLGTLR-MLTLLRPKLITIVE 302 (434)
Q Consensus 255 ~~~~L~~~~~EaLaVN~~~h~l~~~~~~~~~~L~-~ir~L~P~vvv~vE 302 (434)
+. ..-++++++... .....+++ ..+.|+|.-.++.+
T Consensus 94 ----~~-~~~D~v~~~~~~-------~~~~~~l~~~~~~Lk~gG~lv~~ 130 (187)
T PRK08287 94 ----LP-GKADAIFIGGSG-------GNLTAIIDWSLAHLHPGGRLVLT 130 (187)
T ss_pred ----cC-cCCCEEEECCCc-------cCHHHHHHHHHHhcCCCeEEEEE
Confidence 11 112455554321 12344555 45788998877663
No 77
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=39.81 E-value=40 Score=33.75 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=20.4
Q ss_pred CCCCeeEEEEcccCCccccHHHHHHHhc
Q 013903 183 DGADCVHIIDLDIMQGLQWPGLFHILVS 210 (434)
Q Consensus 183 ~g~~~VHIIDfgI~~G~QWpsLiqaLa~ 210 (434)
.|.+.+||||||-+.+.+ -.+|.++++
T Consensus 55 ~Ga~~lHvVDLdgg~~~n-~~~i~~i~~ 81 (262)
T PLN02446 55 DGLTGGHVIMLGADDASL-AAALEALRA 81 (262)
T ss_pred CCCCEEEEEECCCCCccc-HHHHHHHHh
Confidence 689999999999866667 345666655
No 78
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=37.68 E-value=3.7e+02 Score=26.69 Aligned_cols=110 Identities=11% Similarity=0.026 Sum_probs=57.9
Q ss_pred hHhHhHHHHhhcC--CCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH---HHHHHHHHcCCceEEee
Q 013903 171 HFTANQAIFQALD--GADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE---RLADFAMSLGLPFDFNP 245 (434)
Q Consensus 171 ~~tANqAILEA~~--g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~---rL~~fA~slgvpFeF~~ 245 (434)
+..+.+..++.++ ....-.|+|+|.|.|. |-.+++.. + . -+++||+.+.. ...+-++..++...+..
T Consensus 142 ~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~----lai~aa~~-g-~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~ 213 (288)
T TIGR00406 142 THPTTSLCLEWLEDLDLKDKNVIDVGCGSGI----LSIAALKL-G-A--AKVVGIDIDPLAVESARKNAELNQVSDRLQV 213 (288)
T ss_pred CCHHHHHHHHHHHhhcCCCCEEEEeCCChhH----HHHHHHHc-C-C--CeEEEEECCHHHHHHHHHHHHHcCCCcceEE
Confidence 3445555565554 2233579999999985 33444443 2 1 38999998876 23334444556544433
Q ss_pred eccCccccccccccCCCCCceEEEecccccccccCCChHHHHH-HHHhcCCCEEEEE
Q 013903 246 LEGKIGNIIDVSQLGVRPGETIVVHWMHHCLYDITGSDLGTLR-MLTLLRPKLITIV 301 (434)
Q Consensus 246 V~~~~e~l~~~~~L~~~~~EaLaVN~~~h~l~~~~~~~~~~L~-~ir~L~P~vvv~v 301 (434)
+....... .-.+=+.++.|.+.+ ....++. ..+.|+|.-.++.
T Consensus 214 ~~~~~~~~------~~~~fDlVvan~~~~-------~l~~ll~~~~~~LkpgG~li~ 257 (288)
T TIGR00406 214 KLIYLEQP------IEGKADVIVANILAE-------VIKELYPQFSRLVKPGGWLIL 257 (288)
T ss_pred Eecccccc------cCCCceEEEEecCHH-------HHHHHHHHHHHHcCCCcEEEE
Confidence 32211111 011225666675422 1234454 4578899866654
No 79
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=37.24 E-value=3.4e+02 Score=25.39 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=34.5
Q ss_pred HHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHH---HHHHHHcCCc
Q 013903 177 AIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERL---ADFAMSLGLP 240 (434)
Q Consensus 177 AILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL---~~fA~slgvp 240 (434)
.+++.++-...-+|+|+|.|.|..=..|.+.+ .. .-++++|+.+.+.+ .+-.+..|+.
T Consensus 63 ~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~-~~-----~g~V~~iD~~~~~~~~a~~~l~~~~~~ 123 (205)
T PRK13944 63 MMCELIEPRPGMKILEVGTGSGYQAAVCAEAI-ER-----RGKVYTVEIVKELAIYAAQNIERLGYW 123 (205)
T ss_pred HHHHhcCCCCCCEEEEECcCccHHHHHHHHhc-CC-----CCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 45566654445579999999887543333333 11 22799999887622 2333455654
No 80
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=36.47 E-value=70 Score=22.77 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=23.3
Q ss_pred eEEEeccccccc-ccCCChHHHHHHHHhcCCCEEEEEe
Q 013903 266 TIVVHWMHHCLY-DITGSDLGTLRMLTLLRPKLITIVE 302 (434)
Q Consensus 266 aLaVN~~~h~l~-~~~~~~~~~L~~ir~L~P~vvv~vE 302 (434)
.+-||+-.+.+. ....+.+.++.+|+.++|+-+++|-
T Consensus 2 ~i~v~a~v~~~~fSgHad~~~L~~~i~~~~p~~vilVH 39 (43)
T PF07521_consen 2 MIPVRARVEQIDFSGHADREELLEFIEQLNPRKVILVH 39 (43)
T ss_dssp EEE--SEEEESGCSSS-BHHHHHHHHHHHCSSEEEEES
T ss_pred EEEeEEEEEEEeecCCCCHHHHHHHHHhcCCCEEEEec
Confidence 455665322222 1235688999999999999999884
No 81
>PRK07402 precorrin-6B methylase; Provisional
Probab=35.86 E-value=3.5e+02 Score=24.84 Aligned_cols=116 Identities=13% Similarity=0.132 Sum_probs=62.4
Q ss_pred chhHhHhHHHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH---HHHHHHHHcCCceEEee
Q 013903 169 FSHFTANQAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE---RLADFAMSLGLPFDFNP 245 (434)
Q Consensus 169 fa~~tANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~---rL~~fA~slgvpFeF~~ 245 (434)
...--..+.+++.+.-...=.|+|+|.|.|.- . ..++... |.-++|+|+.+.+ .+.+.++.+|++ .++.
T Consensus 23 ~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~-~---~~la~~~---~~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~ 94 (196)
T PRK07402 23 LTKREVRLLLISQLRLEPDSVLWDIGAGTGTI-P---VEAGLLC---PKGRVIAIERDEEVVNLIRRNCDRFGVK-NVEV 94 (196)
T ss_pred CCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHH-H---HHHHHHC---CCCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEE
Confidence 44555666677777644445799999999972 2 2223221 2258999999876 445555667764 2333
Q ss_pred eccCccccccccccCCCCCceEEEecccccccccCCChHHHHHHH-HhcCCCEEEEEec
Q 013903 246 LEGKIGNIIDVSQLGVRPGETIVVHWMHHCLYDITGSDLGTLRML-TLLRPKLITIVEQ 303 (434)
Q Consensus 246 V~~~~e~l~~~~~L~~~~~EaLaVN~~~h~l~~~~~~~~~~L~~i-r~L~P~vvv~vE~ 303 (434)
+..+..+. ...+.-.+ +.+.+. .......+|+.+ +.|+|.-.+++..
T Consensus 95 ~~~d~~~~--~~~~~~~~-d~v~~~--------~~~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 95 IEGSAPEC--LAQLAPAP-DRVCIE--------GGRPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred EECchHHH--HhhCCCCC-CEEEEE--------CCcCHHHHHHHHHHhcCCCeEEEEEe
Confidence 33322221 01111111 233221 112345666654 6789997666653
No 82
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=34.64 E-value=3.1e+02 Score=26.26 Aligned_cols=47 Identities=15% Similarity=0.081 Sum_probs=33.9
Q ss_pred eeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHHHHHHHcCCceE
Q 013903 187 CVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADFAMSLGLPFD 242 (434)
Q Consensus 187 ~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~~fA~slgvpFe 242 (434)
.-.|+|.|.|.|. -+..||.+ -..+|||+.+..-+..+++..|++.+
T Consensus 38 ~~rvL~~gCG~G~----da~~LA~~-----G~~V~avD~s~~Ai~~~~~~~~l~~~ 84 (218)
T PRK13255 38 GSRVLVPLCGKSL----DMLWLAEQ-----GHEVLGVELSELAVEQFFAENGLTPQ 84 (218)
T ss_pred CCeEEEeCCCChH----hHHHHHhC-----CCeEEEEccCHHHHHHHHHHcCCCcc
Confidence 3478999998884 33445554 35899999998877777777777643
No 83
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=33.72 E-value=3.9e+02 Score=28.12 Aligned_cols=114 Identities=11% Similarity=0.042 Sum_probs=59.8
Q ss_pred hHHHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHH--HHH-HHHcCC----ceEEeeec
Q 013903 175 NQAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERL--ADF-AMSLGL----PFDFNPLE 247 (434)
Q Consensus 175 NqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL--~~f-A~slgv----pFeF~~V~ 247 (434)
...+++.+.....=+|+|+|.|.|. +--.|+.+. |..+||+|+.+...+ ++. ++..+. .++|. .
T Consensus 217 trllL~~lp~~~~~~VLDLGCGtGv----i~i~la~~~---P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~--~ 287 (378)
T PRK15001 217 ARFFMQHLPENLEGEIVDLGCGNGV----IGLTLLDKN---PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFM--I 287 (378)
T ss_pred HHHHHHhCCcccCCeEEEEeccccH----HHHHHHHhC---CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEE--E
Confidence 3445666643222379999999997 334455542 567999999886522 111 111222 23443 2
Q ss_pred cC-ccccccccccCCCCCceEEEecccccccccCCC-hHHHH-HHHHhcCCCEEEEEec
Q 013903 248 GK-IGNIIDVSQLGVRPGETIVVHWMHHCLYDITGS-DLGTL-RMLTLLRPKLITIVEQ 303 (434)
Q Consensus 248 ~~-~e~l~~~~~L~~~~~EaLaVN~~~h~l~~~~~~-~~~~L-~~ir~L~P~vvv~vE~ 303 (434)
.+ ++.+ .-..=+.|+.|-.+|........ ...++ ..-+.|+|.-.+.++.
T Consensus 288 ~D~l~~~------~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 288 NNALSGV------EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred ccccccC------CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 21 1111 11122577778655533322221 23444 4557889988777664
No 84
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=33.25 E-value=3.1e+02 Score=25.38 Aligned_cols=98 Identities=16% Similarity=0.198 Sum_probs=50.4
Q ss_pred CeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHH---HHHHHHcCC-ceEEeeeccCccccccccccCC
Q 013903 186 DCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERL---ADFAMSLGL-PFDFNPLEGKIGNIIDVSQLGV 261 (434)
Q Consensus 186 ~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL---~~fA~slgv-pFeF~~V~~~~e~l~~~~~L~~ 261 (434)
+...|+|+|.+.|. +...++.. + .++|+++.+...+ .+.+...++ ++.|.. ....+.. ... .
T Consensus 45 ~~~~vLdlG~G~G~----~~~~l~~~--~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~--~d~~~~~-~~~--~ 110 (224)
T TIGR01983 45 FGLRVLDVGCGGGL----LSEPLARL--G---ANVTGIDASEENIEVAKLHAKKDPLLKIEYRC--TSVEDLA-EKG--A 110 (224)
T ss_pred CCCeEEEECCCCCH----HHHHHHhc--C---CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEe--CCHHHhh-cCC--C
Confidence 35689999999884 33344442 2 2499999877532 233334455 344432 2222221 110 1
Q ss_pred CCCceEEEecccccccccCCChHHHHHHH-HhcCCCEEEEE
Q 013903 262 RPGETIVVHWMHHCLYDITGSDLGTLRML-TLLRPKLITIV 301 (434)
Q Consensus 262 ~~~EaLaVN~~~h~l~~~~~~~~~~L~~i-r~L~P~vvv~v 301 (434)
.+-+.++.+.+.| .. .....+|+.+ +.|+|.-++++
T Consensus 111 ~~~D~i~~~~~l~---~~-~~~~~~l~~~~~~L~~gG~l~i 147 (224)
T TIGR01983 111 KSFDVVTCMEVLE---HV-PDPQAFIRACAQLLKPGGILFF 147 (224)
T ss_pred CCccEEEehhHHH---hC-CCHHHHHHHHHHhcCCCcEEEE
Confidence 2235555553322 21 2345666554 67788866554
No 85
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=32.34 E-value=1.4e+02 Score=28.94 Aligned_cols=58 Identities=19% Similarity=0.354 Sum_probs=43.8
Q ss_pred eeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH---HHHHHHHHcCCc-eEEeeeccCcccc
Q 013903 187 CVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE---RLADFAMSLGLP-FDFNPLEGKIGNI 253 (434)
Q Consensus 187 ~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~---rL~~fA~slgvp-FeF~~V~~~~e~l 253 (434)
..|++|.|-|-|+ |.+.=+++. |.+++|-|++... =|...++.+|++ .++.. .+.|++
T Consensus 68 ~~~~~DIGSGaGf--PGipLAI~~-----p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~--~RaE~~ 129 (215)
T COG0357 68 AKRVLDIGSGAGF--PGIPLAIAF-----PDLKVTLLESLGKKIAFLREVKKELGLENVEIVH--GRAEEF 129 (215)
T ss_pred CCEEEEeCCCCCC--chhhHHHhc-----cCCcEEEEccCchHHHHHHHHHHHhCCCCeEEeh--hhHhhc
Confidence 5699998877665 777777654 5678999998865 788889999998 87764 345555
No 86
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=32.27 E-value=76 Score=29.86 Aligned_cols=56 Identities=20% Similarity=0.407 Sum_probs=40.9
Q ss_pred EEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH---HHHHHHHHcCCceEEeeeccCccc
Q 013903 189 HIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE---RLADFAMSLGLPFDFNPLEGKIGN 252 (434)
Q Consensus 189 HIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~---rL~~fA~slgvpFeF~~V~~~~e~ 252 (434)
.|+|+|-|-|+ |.+.=+++. |.+++|-|++... =|...++.+|++ ..+.+..+.|+
T Consensus 51 ~~lDiGSGaGf--PGipLaI~~-----p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~ 109 (184)
T PF02527_consen 51 KVLDIGSGAGF--PGIPLAIAR-----PDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE 109 (184)
T ss_dssp EEEEETSTTTT--THHHHHHH------TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH
T ss_pred eEEecCCCCCC--hhHHHHHhC-----CCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc
Confidence 59998876665 888888874 6789999999876 788899999998 34455555555
No 87
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=29.72 E-value=4e+02 Score=27.97 Aligned_cols=96 Identities=17% Similarity=0.189 Sum_probs=53.1
Q ss_pred eEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH---HHHHHHHHcCCceEEeeeccCccccccccccCCC--
Q 013903 188 VHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE---RLADFAMSLGLPFDFNPLEGKIGNIIDVSQLGVR-- 262 (434)
Q Consensus 188 VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~---rL~~fA~slgvpFeF~~V~~~~e~l~~~~~L~~~-- 262 (434)
-+|+|++.|.|.==. .||.+. -+++||+.+.+ ...+-++..|+. ..+.+..+.++.. + .+...
T Consensus 294 ~~vLDl~cG~G~~sl----~la~~~-----~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~~~l-~-~~~~~~~ 361 (431)
T TIGR00479 294 ELVVDAYCGVGTFTL----PLAKQA-----KSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLETVL-P-KQPWAGQ 361 (431)
T ss_pred CEEEEcCCCcCHHHH----HHHHhC-----CEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHHHHH-H-HHHhcCC
Confidence 479999998886422 244432 27899998876 333345555653 2223333333321 1 11111
Q ss_pred CCceEEEecccccccccCCChHHHHHHHHhcCCCEEEEE
Q 013903 263 PGETIVVHWMHHCLYDITGSDLGTLRMLTLLRPKLITIV 301 (434)
Q Consensus 263 ~~EaLaVN~~~h~l~~~~~~~~~~L~~ir~L~P~vvv~v 301 (434)
.-+++++|-- . .+-...+|+.+.+++|+-++.+
T Consensus 362 ~~D~vi~dPP-----r-~G~~~~~l~~l~~l~~~~ivyv 394 (431)
T TIGR00479 362 IPDVLLLDPP-----R-KGCAAEVLRTIIELKPERIVYV 394 (431)
T ss_pred CCCEEEECcC-----C-CCCCHHHHHHHHhcCCCEEEEE
Confidence 1245555411 0 1334788899999999887766
No 88
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=29.61 E-value=1.8e+02 Score=29.29 Aligned_cols=64 Identities=11% Similarity=0.091 Sum_probs=35.6
Q ss_pred HHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH---HHHHHHHHcCCceEEeeeccC
Q 013903 177 AIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE---RLADFAMSLGLPFDFNPLEGK 249 (434)
Q Consensus 177 AILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~---rL~~fA~slgvpFeF~~V~~~ 249 (434)
.|++++.-...=.|+|+|.|.|.-- ..|+.+. -++++|+.+.+ .|.+-....|..=.+..+..+
T Consensus 27 ~Iv~~~~~~~~~~VLEIG~G~G~LT----~~Ll~~~-----~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~D 93 (294)
T PTZ00338 27 KIVEKAAIKPTDTVLEIGPGTGNLT----EKLLQLA-----KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGD 93 (294)
T ss_pred HHHHhcCCCCcCEEEEecCchHHHH----HHHHHhC-----CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECC
Confidence 3444444334447999999988743 4444442 26899998876 444433333432234444433
No 89
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=29.45 E-value=1.2e+02 Score=30.16 Aligned_cols=50 Identities=20% Similarity=0.181 Sum_probs=32.4
Q ss_pred eEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH---HHHHHHHHcCCc--eEEe
Q 013903 188 VHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE---RLADFAMSLGLP--FDFN 244 (434)
Q Consensus 188 VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~---rL~~fA~slgvp--FeF~ 244 (434)
.+|+|+|.|.|.--.. |+... |..++||++.+.+ ...+-++..|+. ++|.
T Consensus 116 ~~vLDlG~GsG~i~l~----la~~~---~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~ 170 (284)
T TIGR00536 116 LHILDLGTGSGCIALA----LAYEF---PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFI 170 (284)
T ss_pred CEEEEEeccHhHHHHH----HHHHC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 5899999999964433 33321 2468999998876 334445666765 4443
No 90
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=28.70 E-value=7e+02 Score=26.23 Aligned_cols=67 Identities=13% Similarity=0.127 Sum_probs=46.4
Q ss_pred hHhHHHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH---HHHHHHHHcCCceEEeee
Q 013903 173 TANQAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE---RLADFAMSLGLPFDFNPL 246 (434)
Q Consensus 173 tANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~---rL~~fA~slgvpFeF~~V 246 (434)
.+-+.+..++.-..--.|+|+|.+.|.--..+.+.+. .-+|++++.+.+ .+.+-++.+|++.++..+
T Consensus 225 ~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-------~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~ 294 (426)
T TIGR00563 225 ASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-------QAQVVALDIHEHRLKRVYENLKRLGLTIKAETK 294 (426)
T ss_pred HHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-------CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 3456666667654556899999999987666655441 248999999887 556667778988544333
No 91
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=28.34 E-value=1.3e+02 Score=25.98 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=30.3
Q ss_pred HHHHHhcCCCCCceEEEEeecCChH------HHHHHHHHcCCceEEeeec
Q 013903 204 LFHILVSRSKKIRSMRITGFGSSSE------RLADFAMSLGLPFDFNPLE 247 (434)
Q Consensus 204 LiqaLa~R~~gPP~LRITgI~~~~~------rL~~fA~slgvpFeF~~V~ 247 (434)
-++.|..+ |.+|.|=|--+|.+.. ...+.|+++|+.|+...+.
T Consensus 19 ~i~~l~~~-~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~ 67 (117)
T PF00763_consen 19 EIEKLKEK-GITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELP 67 (117)
T ss_dssp HHHHHHHC-T---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-
T ss_pred HHHHHHhc-CCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECC
Confidence 45667767 7889999999998765 8889999999999988774
No 92
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=27.66 E-value=2.6e+02 Score=26.82 Aligned_cols=64 Identities=23% Similarity=0.337 Sum_probs=47.5
Q ss_pred CCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEE-EeecCChH----HHHHHHHHcCCceEEeeec
Q 013903 183 DGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRI-TGFGSSSE----RLADFAMSLGLPFDFNPLE 247 (434)
Q Consensus 183 ~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRI-TgI~~~~~----rL~~fA~slgvpFeF~~V~ 247 (434)
.+.+.|-+||=.|..|.=-..+|++|-.... -.++-+ |-+++..+ +..+.++.+|+|.+|..+.
T Consensus 119 ~~~~~lVLVDDEiSTG~T~lnli~al~~~~p-~~~yvvasL~d~~~~~~~~~~~~~~~~lgi~i~~vsL~ 187 (191)
T PF15609_consen 119 RNARTLVLVDDEISTGNTFLNLIRALHAKYP-RKRYVVASLLDWRSEEDRARFEALAEELGIPIDVVSLL 187 (191)
T ss_pred cCCCCEEEEecCccchHHHHHHHHHHHHhCC-CceEEEEEEeeCCCHHHHHHHHHHHHHcCCcEEEEEee
Confidence 3467999999999999999999999976632 123222 23344322 7889999999999998764
No 93
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=27.65 E-value=85 Score=29.31 Aligned_cols=55 Identities=20% Similarity=0.213 Sum_probs=46.1
Q ss_pred CHHHHHHHHH-HHHhcCCHHHHHHHHHHhcccCCCCCCcchhHHHHHHHHHHHHhh
Q 013903 76 RLLGLLLQCA-ECVAMDNLDDATDLLPEISELSSPFVSSPERVGAYFAHALQARVV 130 (434)
Q Consensus 76 ~L~~LLl~CA-eAV~~gd~~~A~~lL~~l~~~aSp~Gd~~qRla~yFa~AL~~Rl~ 130 (434)
.+..+|+-|. -++..++...|..++..|..+..|..+-..|+...|.+|+..=..
T Consensus 126 ~i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~ 181 (220)
T TIGR01716 126 RVIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKE 181 (220)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHc
Confidence 3666777666 778888999999999999999888878889999999999976554
No 94
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=27.30 E-value=1.4e+02 Score=28.13 Aligned_cols=48 Identities=25% Similarity=0.287 Sum_probs=32.0
Q ss_pred CeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH---HHHHHHHHcCCc
Q 013903 186 DCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE---RLADFAMSLGLP 240 (434)
Q Consensus 186 ~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~---rL~~fA~slgvp 240 (434)
+..+|+|+|.|.|. +.-.++.+. |..++|||+.+.. ...+.++..|++
T Consensus 87 ~~~~ilDig~G~G~----~~~~l~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~~~~ 137 (251)
T TIGR03534 87 GPLRVLDLGTGSGA----IALALAKER---PDARVTAVDISPEALAVARKNAARLGLD 137 (251)
T ss_pred CCCeEEEEeCcHhH----HHHHHHHHC---CCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 34589999999984 344444432 3568999998876 344555666765
No 95
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=27.25 E-value=65 Score=32.08 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=16.6
Q ss_pred CCCCeeEEEEcccCCccccHHHHHHHhc
Q 013903 183 DGADCVHIIDLDIMQGLQWPGLFHILVS 210 (434)
Q Consensus 183 ~g~~~VHIIDfgI~~G~QWpsLiqaLa~ 210 (434)
.|.+.+||||| +.+ +.. +|..+.+
T Consensus 50 ~Ga~~lHvVDL--g~~-n~~-~i~~i~~ 73 (253)
T TIGR02129 50 DGVKGCHVIML--GPN-NDD-AAKEALH 73 (253)
T ss_pred cCCCEEEEEEC--CCC-cHH-HHHHHHH
Confidence 58999999999 444 553 4555544
No 96
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=24.54 E-value=6.2e+02 Score=24.08 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=32.6
Q ss_pred eEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHHHHHHHcCCceE
Q 013903 188 VHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADFAMSLGLPFD 242 (434)
Q Consensus 188 VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~~fA~slgvpFe 242 (434)
-.|+|+|.|.|.- ...||.+ -..+|||+.+..-+..+++..|++..
T Consensus 36 ~rvLd~GCG~G~d----a~~LA~~-----G~~V~gvD~S~~Ai~~~~~~~~~~~~ 81 (213)
T TIGR03840 36 ARVFVPLCGKSLD----LAWLAEQ-----GHRVLGVELSEIAVEQFFAENGLTPT 81 (213)
T ss_pred CeEEEeCCCchhH----HHHHHhC-----CCeEEEEeCCHHHHHHHHHHcCCCcc
Confidence 4899999998842 3344554 24799999998866676777777643
No 97
>PRK14968 putative methyltransferase; Provisional
Probab=23.79 E-value=2.1e+02 Score=25.51 Aligned_cols=32 Identities=6% Similarity=0.229 Sum_probs=24.4
Q ss_pred eEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH
Q 013903 188 VHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE 228 (434)
Q Consensus 188 VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~ 228 (434)
-.|+|+|.+.|. +...|+.+ ..+|||++.+.+
T Consensus 25 ~~vLd~G~G~G~----~~~~l~~~-----~~~v~~~D~s~~ 56 (188)
T PRK14968 25 DRVLEVGTGSGI----VAIVAAKN-----GKKVVGVDINPY 56 (188)
T ss_pred CEEEEEccccCH----HHHHHHhh-----cceEEEEECCHH
Confidence 469999999998 45555655 248999998876
No 98
>PF04716 ETC_C1_NDUFA5: ETC complex I subunit conserved region; InterPro: IPR006806 This is a family of eukaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC) (1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N terminus of the member proteins [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022904 respiratory electron transport chain, 0005743 mitochondrial inner membrane
Probab=23.44 E-value=1.6e+02 Score=22.64 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhccCCCCChHHHHHHHHHhhhhhhhHHhhCC
Q 013903 319 LHYYSALFDALGDGLGADSIERHTVEQQLFGCEIRNIVAVGG 360 (434)
Q Consensus 319 L~yYsalFDsLea~l~~~~~eR~~vE~~~lg~eI~niVAcEG 360 (434)
...|..+++.|+ .+|.++.-|..+|+ +-++-.+||..++
T Consensus 8 ~~lY~~~L~~L~-~~P~~a~YR~~tE~--it~~Rl~iv~~~~ 46 (57)
T PF04716_consen 8 ISLYNKTLKALK-KIPEDAAYRQYTEA--ITKHRLKIVEEEE 46 (57)
T ss_pred HHHHHHHHHHHH-hCCCccHHHHHHHH--HHHHHHHHHHccc
Confidence 356999999999 69999999999998 4677788887643
No 99
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=22.76 E-value=87 Score=30.72 Aligned_cols=47 Identities=30% Similarity=0.364 Sum_probs=34.8
Q ss_pred cccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHHHHHHHcCCce
Q 013903 193 LDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADFAMSLGLPF 241 (434)
Q Consensus 193 fgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~~fA~slgvpF 241 (434)
+|+|.|.-=..+|+.|++|... -.|+|++|.++. .=...|+++|+|.
T Consensus 25 vGLGTGSTv~~~i~~L~~~~~~-~~l~i~~VptS~-~t~~~a~~~Gipl 71 (228)
T PRK13978 25 LGIGTGSTMELLLPQMAQLIKE-RGYNITGVCTSN-KIAFLAKELGIKI 71 (228)
T ss_pred EEeCchHHHHHHHHHHHHHhhc-cCccEEEEeCcH-HHHHHHHHcCCcE
Confidence 6788888777899999988631 136899996554 4455688999984
No 100
>PHA03411 putative methyltransferase; Provisional
Probab=22.48 E-value=1.8e+02 Score=29.44 Aligned_cols=66 Identities=18% Similarity=0.140 Sum_probs=43.7
Q ss_pred HHHHHhcCCCccchhHhHhHHHHhhc--CCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHH
Q 013903 157 LQSYNSICPLIKFSHFTANQAIFQAL--DGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERL 230 (434)
Q Consensus 157 ~~~f~~~sP~~kfa~~tANqAILEA~--~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL 230 (434)
+..|..-+ +...+.|++.+.|+..+ .....-+|+|+|.|.|. +...++.+.. ..+||+|+.+.+.+
T Consensus 34 ~~~~~g~~-~~~~G~FfTP~~i~~~f~~~~~~~grVLDLGcGsGi----lsl~la~r~~---~~~V~gVDisp~al 101 (279)
T PHA03411 34 YNNYHGDG-LGGSGAFFTPEGLAWDFTIDAHCTGKVLDLCAGIGR----LSFCMLHRCK---PEKIVCVELNPEFA 101 (279)
T ss_pred HHhccccc-ccCceeEcCCHHHHHHHHhccccCCeEEEcCCCCCH----HHHHHHHhCC---CCEEEEEECCHHHH
Confidence 55555555 66678888888888543 22233579999999994 3334444422 26899999887633
No 101
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=22.05 E-value=52 Score=34.53 Aligned_cols=14 Identities=36% Similarity=0.736 Sum_probs=11.1
Q ss_pred CCCCeeEEEEcccC
Q 013903 183 DGADCVHIIDLDIM 196 (434)
Q Consensus 183 ~g~~~VHIIDfgI~ 196 (434)
..+..|||||||+.
T Consensus 163 k~~n~IhiiDFGmA 176 (449)
T KOG1165|consen 163 KDANVIHIIDFGMA 176 (449)
T ss_pred CCCceEEEEeccch
Confidence 34568999999984
No 102
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=22.02 E-value=5.7e+02 Score=22.81 Aligned_cols=19 Identities=16% Similarity=0.111 Sum_probs=13.8
Q ss_pred ccHHHHHhcCCCeeccCCC
Q 013903 370 ERWGEELKRVGFRPVSLSG 388 (434)
Q Consensus 370 ~~W~~rm~~AGF~~v~ls~ 388 (434)
+.....|+.+||..+....
T Consensus 129 ~el~~ll~~aGF~~~~~~~ 147 (160)
T PLN02232 129 EELETLALEAGFSSACHYE 147 (160)
T ss_pred HHHHHHHHHcCCCcceEEE
Confidence 3567788999999775433
No 103
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=21.76 E-value=5e+02 Score=27.48 Aligned_cols=86 Identities=15% Similarity=0.168 Sum_probs=48.5
Q ss_pred hHHHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH---HHHHHHHHcCCceEEeeeccCcc
Q 013903 175 NQAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE---RLADFAMSLGLPFDFNPLEGKIG 251 (434)
Q Consensus 175 NqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~---rL~~fA~slgvpFeF~~V~~~~e 251 (434)
.+.+.+++.-.+.-+|+|+|.+.|.-=..+.+.+ + +.-+||+|+.+.+ .+.+-++..|+.- ...+..+..
T Consensus 239 s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~----~--~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~ 311 (444)
T PRK14902 239 SMLVAPALDPKGGDTVLDACAAPGGKTTHIAELL----K--NTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDAR 311 (444)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHh----C--CCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCcc
Confidence 3455556654444579999999986432233322 1 2248999999877 4556677788752 344433333
Q ss_pred ccccccccCCCCCceEEEe
Q 013903 252 NIIDVSQLGVRPGETIVVH 270 (434)
Q Consensus 252 ~l~~~~~L~~~~~EaLaVN 270 (434)
++ ...+. ..-+.+++|
T Consensus 312 ~~--~~~~~-~~fD~Vl~D 327 (444)
T PRK14902 312 KV--HEKFA-EKFDKILVD 327 (444)
T ss_pred cc--cchhc-ccCCEEEEc
Confidence 32 11111 233677777
No 104
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=21.75 E-value=1.4e+02 Score=27.02 Aligned_cols=113 Identities=14% Similarity=0.056 Sum_probs=59.3
Q ss_pred HhHHHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH---HHHHHHHHcCCceEEeeeccCc
Q 013903 174 ANQAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE---RLADFAMSLGLPFDFNPLEGKI 250 (434)
Q Consensus 174 ANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~---rL~~fA~slgvpFeF~~V~~~~ 250 (434)
+-..+++.+...+.=+|+|+|.|.|.-=- .|+.+ -|..++|+++.+.+ ...+-++..++.- .+.+..++
T Consensus 19 ~t~lL~~~l~~~~~~~vLDlG~G~G~i~~----~la~~---~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~ 90 (170)
T PF05175_consen 19 GTRLLLDNLPKHKGGRVLDLGCGSGVISL----ALAKR---GPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDL 90 (170)
T ss_dssp HHHHHHHHHHHHTTCEEEEETSTTSHHHH----HHHHT---STCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESST
T ss_pred HHHHHHHHHhhccCCeEEEecCChHHHHH----HHHHh---CCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccc
Confidence 34456666655466679999999995322 33333 25788999998876 3334456677763 33333221
Q ss_pred -cccccccccCCCCCceEEEecccccccc-cCCChHHHH-HHHHhcCCCEEEE
Q 013903 251 -GNIIDVSQLGVRPGETIVVHWMHHCLYD-ITGSDLGTL-RMLTLLRPKLITI 300 (434)
Q Consensus 251 -e~l~~~~~L~~~~~EaLaVN~~~h~l~~-~~~~~~~~L-~~ir~L~P~vvv~ 300 (434)
+.+ .-.+=+.++.|=-.|.-.+ .......|+ ..-+-|+|.-..+
T Consensus 91 ~~~~------~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~ 137 (170)
T PF05175_consen 91 FEAL------PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLF 137 (170)
T ss_dssp TTTC------CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred cccc------cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEE
Confidence 222 2122257777743221111 001124444 4557789987663
No 105
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=20.70 E-value=3.4e+02 Score=25.18 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=32.2
Q ss_pred HHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChH---HHHHHHHHcCC
Q 013903 178 IFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE---RLADFAMSLGL 239 (434)
Q Consensus 178 ILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~---rL~~fA~slgv 239 (434)
+++.+.-...-.|+|+|.|.|.... ++..+. + ++++|+.+.+ ...+..+..|+
T Consensus 70 l~~~l~~~~~~~VLeiG~GsG~~t~-~la~~~----~----~v~~vd~~~~~~~~a~~~~~~~~~ 125 (212)
T PRK00312 70 MTELLELKPGDRVLEIGTGSGYQAA-VLAHLV----R----RVFSVERIKTLQWEAKRRLKQLGL 125 (212)
T ss_pred HHHhcCCCCCCEEEEECCCccHHHH-HHHHHh----C----EEEEEeCCHHHHHHHHHHHHHCCC
Confidence 3455554556689999999987433 333332 1 6999998865 33333444555
No 106
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=20.13 E-value=1.6e+02 Score=28.61 Aligned_cols=32 Identities=16% Similarity=0.104 Sum_probs=22.5
Q ss_pred hcCCCCeeEEEEcccC-Ccc-ccHHHHHHHhcCC
Q 013903 181 ALDGADCVHIIDLDIM-QGL-QWPGLFHILVSRS 212 (434)
Q Consensus 181 A~~g~~~VHIIDfgI~-~G~-QWpsLiqaLa~R~ 212 (434)
...|.+.+||+|++-. .|. .=..+|+.+++..
T Consensus 42 ~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~ 75 (234)
T PRK13587 42 QFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLT 75 (234)
T ss_pred hccCCCEEEEEECcccccCCcchHHHHHHHHhhc
Confidence 4458899999999865 233 3456788887643
Done!