Query 013904
Match_columns 434
No_of_seqs 203 out of 1205
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 08:33:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013904.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013904hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1605 TFIIF-interacting CTD 100.0 2.1E-45 4.5E-50 358.7 13.4 199 234-432 62-262 (262)
2 TIGR02251 HIF-SF_euk Dullard-l 100.0 6E-39 1.3E-43 293.5 17.0 161 261-421 1-162 (162)
3 PF03031 NIF: NLI interacting 100.0 7.8E-37 1.7E-41 275.6 15.3 158 262-423 1-159 (159)
4 TIGR02245 HAD_IIID1 HAD-superf 100.0 9.6E-35 2.1E-39 273.7 14.0 157 259-431 19-193 (195)
5 TIGR02250 FCP1_euk FCP1-like p 100.0 7E-31 1.5E-35 239.5 12.9 137 259-398 4-154 (156)
6 KOG2832 TFIIF-interacting CTD 100.0 1.1E-29 2.4E-34 254.1 11.6 157 259-431 187-345 (393)
7 smart00577 CPDc catalytic doma 99.9 1.3E-26 2.8E-31 208.4 14.8 145 260-404 1-148 (148)
8 COG5190 FCP1 TFIIF-interacting 99.9 3.6E-26 7.7E-31 233.7 8.4 173 259-432 210-384 (390)
9 KOG0323 TFIIF-interacting CTD 99.9 4.1E-26 8.8E-31 244.5 9.2 195 186-398 84-297 (635)
10 TIGR01685 MDP-1 magnesium-depe 98.8 1E-08 2.2E-13 95.6 8.7 139 262-400 3-159 (174)
11 PLN03243 haloacid dehalogenase 98.8 5.3E-09 1.2E-13 102.9 4.8 100 299-399 107-210 (260)
12 PLN02770 haloacid dehalogenase 98.8 6E-09 1.3E-13 101.1 5.0 99 299-398 106-208 (248)
13 PRK13225 phosphoglycolate phos 98.8 9.6E-09 2.1E-13 101.8 6.2 97 300-397 141-238 (273)
14 PRK14988 GMP/IMP nucleotidase; 98.8 9.9E-09 2.2E-13 98.3 5.8 98 300-398 92-194 (224)
15 COG0637 Predicted phosphatase/ 98.7 3.4E-09 7.4E-14 101.6 2.3 100 299-399 84-187 (221)
16 PRK13288 pyrophosphatase PpaX; 98.7 9.5E-09 2.1E-13 96.6 4.2 98 299-397 80-181 (214)
17 PRK11587 putative phosphatase; 98.7 1.7E-08 3.6E-13 95.6 5.3 99 299-399 81-183 (218)
18 PRK10725 fructose-1-P/6-phosph 98.7 8E-09 1.7E-13 94.6 3.0 96 300-397 87-185 (188)
19 PLN02575 haloacid dehalogenase 98.7 1.8E-08 3.9E-13 104.4 5.5 99 300-399 215-317 (381)
20 TIGR01454 AHBA_synth_RP 3-amin 98.7 9.6E-09 2.1E-13 96.0 2.8 98 299-397 73-174 (205)
21 TIGR01449 PGP_bact 2-phosphogl 98.7 1.2E-08 2.7E-13 95.0 3.3 99 299-398 83-185 (213)
22 TIGR01681 HAD-SF-IIIC HAD-supe 98.7 1.8E-08 4E-13 88.6 4.1 111 262-384 1-121 (128)
23 PRK13226 phosphoglycolate phos 98.6 3.1E-08 6.6E-13 94.9 4.3 98 299-397 93-194 (229)
24 TIGR01422 phosphonatase phosph 98.6 7.1E-08 1.5E-12 93.2 5.6 99 300-399 98-202 (253)
25 TIGR01993 Pyr-5-nucltdase pyri 98.5 3E-08 6.6E-13 91.1 2.3 93 300-395 83-182 (184)
26 PRK10826 2-deoxyglucose-6-phos 98.5 7.6E-08 1.6E-12 91.1 4.7 103 300-403 91-197 (222)
27 TIGR02009 PGMB-YQAB-SF beta-ph 98.5 4.9E-08 1.1E-12 88.9 2.3 93 300-395 87-183 (185)
28 TIGR03351 PhnX-like phosphonat 98.5 9.8E-08 2.1E-12 89.8 4.4 95 300-394 86-186 (220)
29 TIGR01662 HAD-SF-IIIA HAD-supe 98.5 2.8E-07 6.1E-12 80.3 6.1 116 262-395 1-128 (132)
30 TIGR01656 Histidinol-ppas hist 98.4 1.9E-07 4.1E-12 83.7 4.6 118 262-395 1-142 (147)
31 COG5190 FCP1 TFIIF-interacting 98.4 1.1E-07 2.4E-12 98.3 3.2 135 259-396 24-172 (390)
32 PRK13478 phosphonoacetaldehyde 98.4 3.3E-07 7.1E-12 89.6 6.2 100 300-399 100-204 (267)
33 PLN02940 riboflavin kinase 98.4 1.3E-07 2.8E-12 98.0 2.9 99 300-399 92-195 (382)
34 PRK10563 6-phosphogluconate ph 98.4 1.1E-07 2.3E-12 89.8 2.0 96 299-397 86-185 (221)
35 PRK13223 phosphoglycolate phos 98.4 1.9E-07 4.1E-12 92.2 3.7 96 300-396 100-199 (272)
36 cd01427 HAD_like Haloacid deha 98.4 3.7E-07 8.1E-12 76.7 4.7 115 263-393 1-135 (139)
37 TIGR00213 GmhB_yaeD D,D-heptos 98.4 6.6E-07 1.4E-11 82.4 6.6 115 262-394 2-146 (176)
38 PRK13222 phosphoglycolate phos 98.3 4.4E-07 9.5E-12 85.2 4.7 98 299-397 91-192 (226)
39 TIGR01261 hisB_Nterm histidino 98.3 1.6E-06 3.6E-11 79.6 7.6 123 262-399 2-148 (161)
40 TIGR00338 serB phosphoserine p 98.3 2.9E-07 6.3E-12 86.6 2.4 98 299-398 83-194 (219)
41 PHA02597 30.2 hypothetical pro 98.3 1.3E-07 2.9E-12 87.7 0.1 98 299-398 72-174 (197)
42 PRK08942 D,D-heptose 1,7-bisph 98.3 2.8E-06 6.1E-11 78.4 8.4 120 261-397 3-146 (181)
43 TIGR01684 viral_ppase viral ph 98.3 2.4E-06 5.1E-11 85.8 8.1 122 259-403 124-281 (301)
44 TIGR01549 HAD-SF-IA-v1 haloaci 98.2 4.1E-07 8.9E-12 80.8 2.1 84 299-386 62-149 (154)
45 COG4996 Predicted phosphatase 98.2 5.8E-06 1.3E-10 73.9 9.1 143 263-407 2-155 (164)
46 PHA03398 viral phosphatase sup 98.2 7E-06 1.5E-10 82.5 9.4 122 259-403 126-283 (303)
47 PLN02919 haloacid dehalogenase 98.2 2.2E-06 4.8E-11 99.2 6.2 106 302-407 162-271 (1057)
48 PRK06698 bifunctional 5'-methy 98.2 2.3E-06 5E-11 90.4 5.7 95 300-397 329-426 (459)
49 TIGR01672 AphA HAD superfamily 98.1 3E-06 6.6E-11 82.7 5.9 133 259-397 61-210 (237)
50 PHA02530 pseT polynucleotide k 98.1 2.6E-06 5.5E-11 84.3 5.5 128 259-397 156-295 (300)
51 TIGR01664 DNA-3'-Pase DNA 3'-p 98.1 9.6E-06 2.1E-10 74.7 7.0 121 260-394 12-158 (166)
52 PF12689 Acid_PPase: Acid Phos 98.0 1.8E-05 3.9E-10 73.7 8.1 121 261-385 3-138 (169)
53 TIGR01686 FkbH FkbH-like domai 98.0 1E-05 2.2E-10 81.8 7.0 111 260-386 2-118 (320)
54 COG0546 Gph Predicted phosphat 98.0 5.7E-06 1.2E-10 78.9 4.6 97 300-397 88-188 (220)
55 PRK06769 hypothetical protein; 98.0 8.9E-06 1.9E-10 75.1 5.6 121 260-398 3-137 (173)
56 PF13419 HAD_2: Haloacid dehal 97.9 1E-05 2.3E-10 71.3 4.9 97 298-395 74-174 (176)
57 TIGR02253 CTE7 HAD superfamily 97.9 1.2E-05 2.6E-10 75.5 5.5 100 299-399 92-196 (221)
58 TIGR01509 HAD-SF-IA-v3 haloaci 97.9 1.5E-05 3.3E-10 71.9 5.2 94 300-395 84-181 (183)
59 PRK09552 mtnX 2-hydroxy-3-keto 97.9 4.4E-05 9.5E-10 72.5 7.8 123 299-432 72-218 (219)
60 PRK09456 ?-D-glucose-1-phospha 97.8 1.9E-05 4E-10 73.8 4.5 102 299-400 82-187 (199)
61 TIGR01428 HAD_type_II 2-haloal 97.8 2.6E-05 5.6E-10 72.3 4.8 96 300-396 91-190 (198)
62 TIGR01668 YqeG_hyp_ppase HAD s 97.8 4.6E-05 9.9E-10 70.2 6.0 112 259-399 23-137 (170)
63 PRK05446 imidazole glycerol-ph 97.8 0.00016 3.4E-09 74.7 10.5 123 260-397 1-147 (354)
64 TIGR02254 YjjG/YfnB HAD superf 97.7 3.2E-05 6.9E-10 72.4 4.7 97 300-397 96-197 (224)
65 PRK11009 aphA acid phosphatase 97.7 0.00015 3.2E-09 71.0 8.5 133 259-397 61-210 (237)
66 TIGR01489 DKMTPPase-SF 2,3-dik 97.7 3.8E-05 8.3E-10 69.8 4.0 90 300-390 71-181 (188)
67 PRK09449 dUMP phosphatase; Pro 97.7 4.9E-05 1.1E-09 71.7 4.8 97 300-397 94-195 (224)
68 KOG2914 Predicted haloacid-hal 97.6 2.8E-05 6E-10 75.4 2.8 104 297-400 88-198 (222)
69 KOG3109 Haloacid dehalogenase- 97.6 4.2E-05 9.1E-10 73.7 3.5 91 300-392 99-199 (244)
70 PRK13582 thrH phosphoserine ph 97.6 2E-05 4.4E-10 73.2 0.8 95 299-394 66-167 (205)
71 PF05152 DUF705: Protein of un 97.6 0.00039 8.4E-09 69.5 9.8 71 259-351 120-192 (297)
72 PLN02954 phosphoserine phospha 97.6 6.5E-05 1.4E-09 70.9 4.2 93 300-394 83-192 (224)
73 TIGR01670 YrbI-phosphatas 3-de 97.5 0.00016 3.6E-09 65.5 5.2 112 262-394 2-115 (154)
74 TIGR02247 HAD-1A3-hyp Epoxide 97.4 7.4E-05 1.6E-09 70.0 2.7 100 299-399 92-197 (211)
75 PLN02779 haloacid dehalogenase 97.4 0.00022 4.8E-09 71.1 6.0 99 300-399 143-247 (286)
76 TIGR01990 bPGM beta-phosphoglu 97.4 0.00013 2.9E-09 66.3 4.0 93 301-396 87-183 (185)
77 PLN02811 hydrolase 97.3 0.00027 5.7E-09 67.1 4.9 99 300-399 77-185 (220)
78 TIGR02252 DREG-2 REG-2-like, H 97.3 0.00028 6E-09 65.6 4.2 91 301-393 105-200 (203)
79 COG1011 Predicted hydrolase (H 97.3 0.00065 1.4E-08 63.7 6.8 97 300-398 98-198 (229)
80 TIGR01548 HAD-SF-IA-hyp1 haloa 97.2 0.00063 1.4E-08 63.3 5.7 82 302-385 107-192 (197)
81 TIGR01691 enolase-ppase 2,3-di 97.2 0.00058 1.3E-08 66.0 5.4 99 299-398 93-196 (220)
82 TIGR01663 PNK-3'Pase polynucle 97.1 0.0011 2.5E-08 71.7 8.0 109 259-381 166-294 (526)
83 TIGR01491 HAD-SF-IB-PSPlk HAD- 97.1 0.00097 2.1E-08 61.3 6.3 95 300-395 79-187 (201)
84 PRK08238 hypothetical protein; 97.1 0.0015 3.2E-08 70.1 8.1 77 300-382 71-150 (479)
85 PRK11133 serB phosphoserine ph 97.0 0.00026 5.6E-09 72.2 1.9 96 299-395 179-288 (322)
86 PRK09484 3-deoxy-D-manno-octul 97.0 0.0011 2.3E-08 61.8 5.8 116 259-395 19-136 (183)
87 TIGR02137 HSK-PSP phosphoserin 97.0 0.0006 1.3E-08 64.9 3.7 92 300-395 67-168 (203)
88 TIGR01689 EcbF-BcbF capsule bi 97.0 0.0019 4.1E-08 57.5 6.6 76 262-354 2-91 (126)
89 TIGR01459 HAD-SF-IIA-hyp4 HAD- 97.0 0.0012 2.7E-08 63.7 5.9 97 259-381 6-105 (242)
90 TIGR01533 lipo_e_P4 5'-nucleot 96.5 0.0026 5.5E-08 63.4 4.4 93 259-352 73-173 (266)
91 PTZ00445 p36-lilke protein; Pr 96.4 0.0057 1.2E-07 59.1 5.5 131 259-399 41-206 (219)
92 TIGR01493 HAD-SF-IA-v2 Haloaci 96.4 0.00099 2.1E-08 60.3 0.3 79 299-384 88-169 (175)
93 TIGR02726 phenyl_P_delta pheny 96.2 0.0099 2.2E-07 55.3 6.1 116 260-397 6-124 (169)
94 COG0561 Cof Predicted hydrolas 96.2 0.016 3.4E-07 56.3 7.5 59 260-341 2-61 (264)
95 PRK10748 flavin mononucleotide 96.0 0.0048 1E-07 59.5 2.9 90 300-395 112-205 (238)
96 PRK00192 mannosyl-3-phosphogly 95.9 0.022 4.8E-07 56.0 7.5 58 261-341 4-62 (273)
97 COG0560 SerB Phosphoserine pho 95.9 0.0039 8.4E-08 59.9 1.9 86 300-386 76-175 (212)
98 PF08645 PNK3P: Polynucleotide 95.8 0.023 5E-07 52.1 6.4 107 262-382 1-129 (159)
99 PF08282 Hydrolase_3: haloacid 95.7 0.023 5E-07 53.0 6.4 54 264-340 1-55 (254)
100 PF13344 Hydrolase_6: Haloacid 95.7 0.02 4.4E-07 48.5 5.2 50 264-337 1-51 (101)
101 TIGR03333 salvage_mtnX 2-hydro 95.6 0.027 5.9E-07 53.3 6.5 94 299-392 68-177 (214)
102 PRK03669 mannosyl-3-phosphogly 95.6 0.036 7.8E-07 54.4 7.4 59 259-340 5-64 (271)
103 PRK10513 sugar phosphate phosp 95.6 0.033 7.1E-07 54.1 6.9 57 261-340 3-60 (270)
104 PRK10530 pyridoxal phosphate ( 95.5 0.041 8.9E-07 53.2 7.3 58 261-341 3-61 (272)
105 COG2179 Predicted hydrolase of 95.5 0.032 6.9E-07 52.1 6.0 110 259-398 26-141 (175)
106 TIGR01487 SPP-like sucrose-pho 95.5 0.04 8.7E-07 51.9 6.9 57 262-341 2-59 (215)
107 PRK01158 phosphoglycolate phos 95.3 0.057 1.2E-06 51.0 7.5 58 261-341 3-61 (230)
108 TIGR01544 HAD-SF-IE haloacid d 95.3 0.053 1.2E-06 54.4 7.3 105 299-404 119-248 (277)
109 TIGR02461 osmo_MPG_phos mannos 95.1 0.049 1.1E-06 52.5 6.5 53 264-340 2-55 (225)
110 PRK15126 thiamin pyrimidine py 95.1 0.055 1.2E-06 52.8 7.0 58 261-341 2-60 (272)
111 PF06941 NT5C: 5' nucleotidase 95.1 0.0076 1.7E-07 56.2 0.9 83 300-398 72-162 (191)
112 PRK10976 putative hydrolase; P 95.1 0.057 1.2E-06 52.4 7.0 58 261-341 2-60 (266)
113 TIGR00099 Cof-subfamily Cof su 95.1 0.051 1.1E-06 52.5 6.6 56 263-341 1-57 (256)
114 COG3882 FkbH Predicted enzyme 95.0 0.032 7E-07 59.6 5.2 131 252-398 213-355 (574)
115 TIGR02463 MPGP_rel mannosyl-3- 95.0 0.062 1.3E-06 50.7 6.7 54 264-340 2-56 (221)
116 COG0241 HisB Histidinol phosph 94.8 0.042 9.2E-07 51.9 5.0 119 261-393 5-144 (181)
117 TIGR01482 SPP-subfamily Sucros 94.4 0.1 2.2E-06 49.0 6.5 54 264-340 1-55 (225)
118 PTZ00174 phosphomannomutase; P 94.4 0.1 2.3E-06 50.6 6.7 53 260-335 4-57 (247)
119 smart00775 LNS2 LNS2 domain. T 94.3 0.098 2.1E-06 47.9 5.9 62 264-337 2-67 (157)
120 PF09419 PGP_phosphatase: Mito 94.2 0.12 2.6E-06 48.3 6.4 94 259-382 39-147 (168)
121 PRK10444 UMP phosphatase; Prov 94.0 0.086 1.9E-06 51.7 5.3 54 262-339 2-56 (248)
122 TIGR01486 HAD-SF-IIB-MPGP mann 94.0 0.11 2.4E-06 50.4 6.1 54 264-340 2-56 (256)
123 TIGR01484 HAD-SF-IIB HAD-super 93.5 0.15 3.1E-06 47.5 5.7 54 263-338 1-55 (204)
124 TIGR01488 HAD-SF-IB Haloacid D 93.5 0.23 5.1E-06 44.6 6.9 85 299-384 71-171 (177)
125 TIGR01452 PGP_euk phosphoglyco 93.5 0.12 2.5E-06 51.2 5.1 43 261-327 2-45 (279)
126 PLN02645 phosphoglycolate phos 93.3 0.12 2.6E-06 52.1 5.1 55 259-337 26-81 (311)
127 PRK12702 mannosyl-3-phosphogly 93.2 0.25 5.4E-06 50.2 7.0 57 262-341 2-59 (302)
128 TIGR01456 CECR5 HAD-superfamil 93.1 0.16 3.4E-06 51.5 5.6 53 262-338 1-62 (321)
129 TIGR01458 HAD-SF-IIA-hyp3 HAD- 93.1 0.12 2.6E-06 50.8 4.6 54 262-335 2-56 (257)
130 TIGR01490 HAD-SF-IB-hyp1 HAD-s 92.7 0.17 3.7E-06 46.7 4.9 91 301-392 87-192 (202)
131 COG4502 5'(3')-deoxyribonucleo 92.5 0.3 6.5E-06 44.7 5.9 83 300-399 67-155 (180)
132 PF11019 DUF2608: Protein of u 92.5 0.19 4.1E-06 49.7 5.1 101 299-399 79-210 (252)
133 PLN02887 hydrolase family prot 92.4 0.29 6.2E-06 54.0 6.8 59 259-340 306-365 (580)
134 PRK14502 bifunctional mannosyl 92.1 0.56 1.2E-05 52.6 8.6 59 259-340 414-473 (694)
135 TIGR01675 plant-AP plant acid 91.7 0.25 5.5E-06 48.3 4.8 90 259-351 75-172 (229)
136 TIGR01457 HAD-SF-IIA-hyp2 HAD- 91.5 0.31 6.8E-06 47.5 5.3 55 262-340 2-60 (249)
137 COG0647 NagD Predicted sugar p 91.5 0.29 6.2E-06 49.1 5.0 55 259-337 6-61 (269)
138 PLN02423 phosphomannomutase 90.5 0.57 1.2E-05 45.7 6.1 54 260-339 6-59 (245)
139 KOG3085 Predicted hydrolase (H 90.4 0.2 4.3E-06 49.3 2.7 97 299-398 112-213 (237)
140 PRK10187 trehalose-6-phosphate 90.4 0.4 8.6E-06 47.4 4.9 62 259-338 12-75 (266)
141 TIGR01485 SPP_plant-cyano sucr 90.0 0.61 1.3E-05 45.1 5.8 61 261-341 1-62 (249)
142 TIGR01460 HAD-SF-IIA Haloacid 89.4 0.49 1.1E-05 45.8 4.6 51 264-338 1-56 (236)
143 TIGR01511 ATPase-IB1_Cu copper 88.7 0.87 1.9E-05 49.9 6.4 86 299-394 403-489 (562)
144 TIGR02244 HAD-IG-Ncltidse HAD 87.7 2.3 4.9E-05 44.1 8.3 56 296-351 179-242 (343)
145 PLN03017 trehalose-phosphatase 86.5 1.1 2.3E-05 46.9 5.1 60 259-336 109-168 (366)
146 PF00702 Hydrolase: haloacid d 86.5 0.88 1.9E-05 41.7 4.1 79 298-382 124-206 (215)
147 COG2503 Predicted secreted aci 84.0 1 2.2E-05 44.7 3.4 85 259-349 77-175 (274)
148 TIGR01525 ATPase-IB_hvy heavy 83.9 1.9 4.2E-05 47.0 5.9 88 298-394 381-470 (556)
149 PLN02151 trehalose-phosphatase 83.8 1.7 3.7E-05 45.2 5.2 59 259-335 96-154 (354)
150 COG4359 Uncharacterized conser 83.6 3.1 6.6E-05 39.9 6.3 42 300-341 72-114 (220)
151 TIGR01548 HAD-SF-IA-hyp1 haloa 82.0 0.61 1.3E-05 43.2 1.0 15 263-277 2-16 (197)
152 TIGR02471 sucr_syn_bact_C sucr 80.3 2.3 5.1E-05 40.6 4.4 53 264-340 2-54 (236)
153 TIGR01512 ATPase-IB2_Cd heavy 79.7 2 4.2E-05 46.8 4.1 89 298-395 359-449 (536)
154 TIGR00685 T6PP trehalose-phosp 79.5 1.5 3.2E-05 42.5 2.8 49 260-326 2-52 (244)
155 PF03767 Acid_phosphat_B: HAD 79.4 0.35 7.7E-06 47.0 -1.6 64 259-328 70-143 (229)
156 PLN02580 trehalose-phosphatase 79.1 3.4 7.4E-05 43.5 5.5 60 259-336 117-176 (384)
157 KOG3120 Predicted haloacid deh 79.0 0.77 1.7E-05 45.0 0.6 56 300-356 83-140 (256)
158 COG1877 OtsB Trehalose-6-phosp 78.8 3.3 7.1E-05 41.5 5.0 59 259-335 16-76 (266)
159 TIGR02253 CTE7 HAD superfamily 78.6 1.1 2.5E-05 41.7 1.6 16 262-277 3-18 (221)
160 PRK11590 hypothetical protein; 77.7 1.3 2.7E-05 42.0 1.6 39 300-338 94-134 (211)
161 COG3769 Predicted hydrolase (H 77.5 5.7 0.00012 39.2 6.0 57 261-341 7-64 (274)
162 TIGR02252 DREG-2 REG-2-like, H 77.4 1.2 2.5E-05 41.3 1.3 15 262-276 1-15 (203)
163 PRK14501 putative bifunctional 77.3 3.7 8.1E-05 46.3 5.5 61 259-337 490-552 (726)
164 PRK10748 flavin mononucleotide 76.9 1.3 2.9E-05 42.6 1.6 17 260-276 9-25 (238)
165 TIGR01680 Veg_Stor_Prot vegeta 76.1 3.7 7.9E-05 41.4 4.5 92 260-352 100-198 (275)
166 PRK11590 hypothetical protein; 74.7 4.5 9.7E-05 38.2 4.5 17 260-276 5-21 (211)
167 PLN02779 haloacid dehalogenase 73.8 1.7 3.7E-05 43.3 1.5 18 259-276 38-55 (286)
168 TIGR01990 bPGM beta-phosphoglu 73.7 1.4 3E-05 39.8 0.7 15 263-277 1-15 (185)
169 PF12710 HAD: haloacid dehalog 72.6 4.9 0.00011 36.3 4.1 47 302-348 86-138 (192)
170 TIGR01493 HAD-SF-IA-v2 Haloaci 72.0 1.8 3.9E-05 38.9 1.1 13 264-276 2-14 (175)
171 TIGR02254 YjjG/YfnB HAD superf 71.6 1.9 4.2E-05 40.0 1.2 16 262-277 2-17 (224)
172 TIGR01428 HAD_type_II 2-haloal 71.4 2 4.3E-05 39.6 1.3 15 262-276 2-16 (198)
173 TIGR02247 HAD-1A3-hyp Epoxide 70.3 2.4 5.2E-05 39.5 1.6 15 262-276 3-17 (211)
174 PRK09449 dUMP phosphatase; Pro 70.3 2.3 4.9E-05 39.9 1.4 15 261-275 3-17 (224)
175 TIGR01491 HAD-SF-IB-PSPlk HAD- 69.9 2.8 6.1E-05 38.2 1.9 16 261-276 4-19 (201)
176 PF05116 S6PP: Sucrose-6F-phos 69.9 7.7 0.00017 37.9 5.1 55 260-338 1-57 (247)
177 TIGR01545 YfhB_g-proteo haloac 69.3 11 0.00023 36.0 5.8 38 300-337 93-132 (210)
178 PF06888 Put_Phosphatase: Puta 69.0 11 0.00023 37.2 5.8 53 299-352 69-124 (234)
179 PF08235 LNS2: LNS2 (Lipin/Ned 66.0 16 0.00035 33.9 6.0 62 264-337 2-64 (157)
180 PF13419 HAD_2: Haloacid dehal 64.5 3.3 7.1E-05 36.1 1.1 14 264-277 1-14 (176)
181 TIGR01509 HAD-SF-IA-v3 haloaci 64.2 3 6.5E-05 37.3 0.9 15 263-277 1-15 (183)
182 PLN02382 probable sucrose-phos 63.5 19 0.0004 38.2 6.7 17 259-275 7-23 (413)
183 PF05822 UMPH-1: Pyrimidine 5' 61.8 14 0.00029 36.8 5.0 100 299-398 88-211 (246)
184 PLN02205 alpha,alpha-trehalose 56.0 21 0.00045 41.5 5.9 59 259-337 594-654 (854)
185 PRK10671 copA copper exporting 54.2 13 0.00028 42.8 3.9 85 301-394 650-735 (834)
186 KOG4549 Magnesium-dependent ph 53.6 50 0.0011 30.0 6.6 119 260-382 4-133 (144)
187 PRK09456 ?-D-glucose-1-phospha 49.1 9.3 0.0002 35.4 1.5 14 263-276 2-15 (199)
188 COG1011 Predicted hydrolase (H 49.0 10 0.00022 35.3 1.7 17 260-276 3-19 (229)
189 PLN03063 alpha,alpha-trehalose 47.5 33 0.00072 39.5 5.8 63 259-336 505-569 (797)
190 COG4229 Predicted enolase-phos 47.5 21 0.00046 34.3 3.5 95 300-396 102-202 (229)
191 TIGR01545 YfhB_g-proteo haloac 47.3 10 0.00022 36.2 1.4 16 261-276 5-20 (210)
192 PF05761 5_nucleotid: 5' nucle 46.8 34 0.00073 36.9 5.4 53 297-349 179-240 (448)
193 PF02358 Trehalose_PPase: Treh 43.0 23 0.0005 33.9 3.2 51 265-333 1-53 (235)
194 KOG2134 Polynucleotide kinase 39.4 47 0.001 35.3 4.9 57 259-326 73-130 (422)
195 PLN03064 alpha,alpha-trehalose 38.4 63 0.0014 38.0 6.2 70 259-337 589-660 (934)
196 TIGR01459 HAD-SF-IIA-hyp4 HAD- 38.3 4 8.7E-05 39.3 -2.9 90 303-394 140-237 (242)
197 TIGR01488 HAD-SF-IB Haloacid D 35.7 17 0.00037 32.4 0.9 13 264-276 2-14 (177)
198 PF12710 HAD: haloacid dehalog 35.4 21 0.00045 32.1 1.4 13 264-276 1-13 (192)
199 TIGR01458 HAD-SF-IIA-hyp3 HAD- 35.1 3.9 8.5E-05 40.1 -3.6 94 304-398 123-224 (257)
200 KOG3040 Predicted sugar phosph 34.5 48 0.001 32.6 3.8 103 260-387 6-125 (262)
201 KOG1615 Phosphoserine phosphat 34.2 1E+02 0.0022 30.1 5.9 86 300-386 87-188 (227)
202 TIGR01490 HAD-SF-IB-hyp1 HAD-s 33.7 20 0.00043 32.9 1.0 12 264-275 2-13 (202)
203 TIGR02826 RNR_activ_nrdG3 anae 32.4 79 0.0017 28.7 4.7 64 301-379 72-137 (147)
204 PF00702 Hydrolase: haloacid d 27.7 35 0.00075 31.1 1.6 15 262-276 2-16 (215)
205 PF15386 Tantalus: Drosophila 25.5 31 0.00066 27.2 0.7 9 111-119 35-43 (61)
206 cd06537 CIDE_N_B CIDE_N domain 23.0 1.3E+02 0.0028 25.1 3.9 16 261-276 39-54 (81)
207 KOG3507 DNA-directed RNA polym 23.0 31 0.00068 27.0 0.3 18 202-219 17-34 (62)
208 PRK15334 antigen presentation 22.5 47 0.001 32.7 1.5 46 95-152 229-274 (336)
209 cd06539 CIDE_N_A CIDE_N domain 22.1 1.5E+02 0.0032 24.6 4.1 17 260-276 39-55 (78)
210 COG1778 Low specificity phosph 21.5 4.5E+02 0.0097 24.8 7.5 118 259-396 6-124 (170)
211 cd01615 CIDE_N CIDE_N domain, 20.7 1.6E+02 0.0035 24.3 4.0 17 260-276 39-55 (78)
212 smart00266 CAD Domains present 20.5 1.6E+02 0.0034 24.1 3.9 17 260-276 37-53 (74)
No 1
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=100.00 E-value=2.1e-45 Score=358.69 Aligned_cols=199 Identities=54% Similarity=0.877 Sum_probs=178.9
Q ss_pred hhhcCCCCCCCCCCCCCCCCCCcccCCceEEEEeccccccccc--cccCCCCCceeEEEecceeceeEEeecchHHHHHH
Q 013904 234 FIRNFLDLSDMDPDLLPALVPKETERKRVTLVLDLDETLVHSS--TEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLE 311 (434)
Q Consensus 234 ~I~~~p~ls~~~~~~~~~llpk~~~~kK~tLVLDLD~TLVhS~--~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~ 311 (434)
+....+..........+.+.++....+|++||||||||||||+ .++...+++..++.+.+..+.+||.+|||+++||+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~lVLDLDeTLvHss~~~~~~~~~d~~~~v~~~~~~~~~yV~kRP~vdeFL~ 141 (262)
T KOG1605|consen 62 FEKYQPVKYASQTPLSPVLPLRLATVGRKTLVLDLDETLVHSSLNLKPIVNADFTVPVEIDGHIHQVYVRKRPHVDEFLS 141 (262)
T ss_pred hhhcccccccccccccccCCcccccCCCceEEEeCCCcccccccccCCCCCcceeeeeeeCCcceEEEEEcCCCHHHHHH
Confidence 3334443333322333444444444889999999999999999 66777899999999998999999999999999999
Q ss_pred HhhcCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCCcccccccccCCCCCcEEEEECChhhhccCCCCe
Q 013904 312 RVAEMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDGSYAKDLTILGVDLARIAIIDNSPQVFRLQLDNG 391 (434)
Q Consensus 312 ~lsk~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g~y~KDL~~Lgrdl~~vIIIDDsp~~~~~qp~Ng 391 (434)
+++++||++||||+...||.+|++.||+.++.|++|+||++|....|.|+|||+.+|+++++||||||+|.+|.+||+||
T Consensus 142 ~~s~~~e~v~FTAs~~~Ya~~v~D~LD~~~~i~~~RlyR~~C~~~~g~yvKdls~~~~dL~~viIiDNsP~sy~~~p~Ng 221 (262)
T KOG1605|consen 142 RVSKWYELVLFTASLEVYADPLLDILDPDRKIISHRLYRDSCTLKDGNYVKDLSVLGRDLSKVIIVDNSPQSYRLQPENG 221 (262)
T ss_pred HhHHHHHHHHHHhhhHHHHHHHHHHccCCCCeeeeeecccceEeECCcEEEEcceeccCcccEEEEcCChHHhccCccCC
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred eeeeeecCCCCchHHHhHHHHHHhccCCCChHHHHHHhhCC
Q 013904 392 IPIKSWFDDPSDCALISLLPFLETLAAADDVRPIIAEKFSI 432 (434)
Q Consensus 392 I~I~~f~~d~~D~eLl~Ll~~Le~L~~~~DVR~~L~k~f~~ 432 (434)
|||++|++++.|+||++|+|||+.|+..+|||++++++|+.
T Consensus 222 IpI~sw~~d~~D~eLL~LlpfLe~L~~~~Dvr~~l~~~~~~ 262 (262)
T KOG1605|consen 222 IPIKSWFDDPTDTELLKLLPFLEALAFVDDVRPILARRFGN 262 (262)
T ss_pred CcccccccCCChHHHHHHHHHHHHhcccccHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999984
No 2
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=100.00 E-value=6e-39 Score=293.46 Aligned_cols=161 Identities=54% Similarity=0.903 Sum_probs=152.5
Q ss_pred ceEEEEeccccccccccccCC-CCCceeEEEecceeceeEEeecchHHHHHHHhhcCeEEEEEcCCchHHHHHHHHHhCC
Q 013904 261 RVTLVLDLDETLVHSSTEPCD-DADFTFQVFFNMKEHTVYVRQRPFLRTFLERVAEMFEIIVFTASESVYAEKLLDILDP 339 (434)
Q Consensus 261 K~tLVLDLD~TLVhS~~~~~~-~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~lsk~yEIvI~Tas~~~YA~~Il~~LDP 339 (434)
|++|||||||||||++..+.. ..++.+.+...+..+.+||++|||+.|||++|+++|+|+|||++.+.||++++++|||
T Consensus 1 k~~lvlDLDeTLi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~yei~I~Ts~~~~yA~~il~~ldp 80 (162)
T TIGR02251 1 KKTLVLDLDETLVHSTFKMPKVDADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKWYELVIFTASLEEYADPVLDILDR 80 (162)
T ss_pred CcEEEEcCCCCcCCCCCCCCCCCCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhcCEEEEEcCCcHHHHHHHHHHHCc
Confidence 579999999999999887755 5777777777777889999999999999999999999999999999999999999999
Q ss_pred CCCeeeEEEecccceeeCCcccccccccCCCCCcEEEEECChhhhccCCCCeeeeeeecCCCCchHHHhHHHHHHhccCC
Q 013904 340 DRMLIARRAYRESCIFSDGSYAKDLTILGVDLARIAIIDNSPQVFRLQLDNGIPIKSWFDDPSDCALISLLPFLETLAAA 419 (434)
Q Consensus 340 ~~~~F~~rl~Re~c~~~~g~y~KDL~~Lgrdl~~vIIIDDsp~~~~~qp~NgI~I~~f~~d~~D~eLl~Ll~~Le~L~~~ 419 (434)
.+.+|.++++|++|...++.|.|||+++|+++++||+|||++..|..|++|||+|.+|.++.+|++|.+|++||+.|+..
T Consensus 81 ~~~~f~~~l~r~~~~~~~~~~~K~L~~l~~~~~~vIiVDD~~~~~~~~~~NgI~i~~f~~~~~D~~L~~l~~~L~~l~~~ 160 (162)
T TIGR02251 81 GGKVISRRLYRESCVFTNGKYVKDLSLVGKDLSKVIIIDNSPYSYSLQPDNAIPIKSWFGDPNDTELLNLIPFLEGLRFE 160 (162)
T ss_pred CCCEEeEEEEccccEEeCCCEEeEchhcCCChhhEEEEeCChhhhccCccCEeecCCCCCCCCHHHHHHHHHHHHHHhcc
Confidence 98899999999999999899999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC
Q 013904 420 DD 421 (434)
Q Consensus 420 ~D 421 (434)
+|
T Consensus 161 ~~ 162 (162)
T TIGR02251 161 DD 162 (162)
T ss_pred CC
Confidence 76
No 3
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=100.00 E-value=7.8e-37 Score=275.62 Aligned_cols=158 Identities=49% Similarity=0.839 Sum_probs=129.6
Q ss_pred eEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhhcCeEEEEEcCCchHHHHHHHHHhCCCC
Q 013904 262 VTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVAEMFEIIVFTASESVYAEKLLDILDPDR 341 (434)
Q Consensus 262 ~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~lsk~yEIvI~Tas~~~YA~~Il~~LDP~~ 341 (434)
|+|||||||||||+......+.++... . ....+++++|||+++||++++++|+|+|||++.+.||+.|++.|||.+
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~~~~~~~---~-~~~~~~v~~RP~l~~FL~~l~~~~ev~i~T~~~~~ya~~v~~~ldp~~ 76 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLPYDFKII---D-QRGGYYVKLRPGLDEFLEELSKHYEVVIWTSASEEYAEPVLDALDPNG 76 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT-SEEEE---T-EEEEEEEEE-TTHHHHHHHHHHHCEEEEE-SS-HHHHHHHHHHHTTTT
T ss_pred CEEEEeCCCcEEEEeecCCCCccccee---c-cccceeEeeCchHHHHHHHHHHhceEEEEEeehhhhhhHHHHhhhhhc
Confidence 689999999999998765443333211 2 566789999999999999999999999999999999999999999988
Q ss_pred CeeeEEEecccceeeCCcccccccccCCCCCcEEEEECChhhhccCCCCeeeeeeecCC-CCchHHHhHHHHHHhccCCC
Q 013904 342 MLIARRAYRESCIFSDGSYAKDLTILGVDLARIAIIDNSPQVFRLQLDNGIPIKSWFDD-PSDCALISLLPFLETLAAAD 420 (434)
Q Consensus 342 ~~F~~rl~Re~c~~~~g~y~KDL~~Lgrdl~~vIIIDDsp~~~~~qp~NgI~I~~f~~d-~~D~eLl~Ll~~Le~L~~~~ 420 (434)
.+|.++++|++|...++.+.|||+++|+++++||||||++.+|..+++|+|+|++|.++ ..|.+|..|++||+.|+.++
T Consensus 77 ~~~~~~~~r~~~~~~~~~~~KdL~~l~~~~~~vvivDD~~~~~~~~~~N~i~v~~f~~~~~~D~~L~~l~~~L~~l~~~~ 156 (159)
T PF03031_consen 77 KLFSRRLYRDDCTFDKGSYIKDLSKLGRDLDNVVIVDDSPRKWALQPDNGIPVPPFFGDTPNDRELLRLLPFLEELAKED 156 (159)
T ss_dssp SSEEEEEEGGGSEEETTEEE--GGGSSS-GGGEEEEES-GGGGTTSGGGEEE----SSCHTT--HHHHHHHHHHHHHTHS
T ss_pred cccccccccccccccccccccchHHHhhccccEEEEeCCHHHeeccCCceEEeccccCCCcchhHHHHHHHHHHHhCccc
Confidence 89999999999998888889999999999999999999999999999999999999999 99999999999999999999
Q ss_pred ChH
Q 013904 421 DVR 423 (434)
Q Consensus 421 DVR 423 (434)
|||
T Consensus 157 Dvr 159 (159)
T PF03031_consen 157 DVR 159 (159)
T ss_dssp -CH
T ss_pred CCC
Confidence 998
No 4
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=100.00 E-value=9.6e-35 Score=273.69 Aligned_cols=157 Identities=22% Similarity=0.314 Sum_probs=135.2
Q ss_pred CCceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhhcCeEEEEEcCCchHHHHHHHHHhC
Q 013904 259 RKRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVAEMFEIIVFTASESVYAEKLLDILD 338 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~lsk~yEIvI~Tas~~~YA~~Il~~LD 338 (434)
.+|++|||||||||||+... ..++++.+|||+++||++++++|||+||||+.+.||+.+++.|+
T Consensus 19 ~~kklLVLDLDeTLvh~~~~----------------~~~~~~~kRP~l~eFL~~~~~~feIvVwTAa~~~ya~~~l~~l~ 82 (195)
T TIGR02245 19 EGKKLLVLDIDYTLFDHRSP----------------AETGEELMRPYLHEFLTSAYEDYDIVIWSATSMKWIEIKMTELG 82 (195)
T ss_pred CCCcEEEEeCCCceEccccc----------------CCCceEEeCCCHHHHHHHHHhCCEEEEEecCCHHHHHHHHHHhc
Confidence 57899999999999997421 12457889999999999999999999999999999999999998
Q ss_pred CCC-CeeeEEEecccce------eeCCc-ccccccccC------CCCCcEEEEECChhhhccCCCCeeeeeeecC----C
Q 013904 339 PDR-MLIARRAYRESCI------FSDGS-YAKDLTILG------VDLARIAIIDNSPQVFRLQLDNGIPIKSWFD----D 400 (434)
Q Consensus 339 P~~-~~F~~rl~Re~c~------~~~g~-y~KDL~~Lg------rdl~~vIIIDDsp~~~~~qp~NgI~I~~f~~----d 400 (434)
+.+ .-+..++++++|. ...|. ++|||+.++ .++++||||||+|.++.+||+|||+|++|++ +
T Consensus 83 ~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKdL~~lw~~l~~~~~~~ntiiVDd~p~~~~~~P~N~i~I~~f~~~~~~~ 162 (195)
T TIGR02245 83 VLTNPNYKITFLLDSTAMITVHTPRRGKFDVKPLGVIWALLPEFYSMKNTIMFDDLRRNFLMNPQNGLKIRPFKKAHANR 162 (195)
T ss_pred ccCCccceEEEEeccccceeeEeeccCcEEEeecHHhhhhcccCCCcccEEEEeCCHHHHhcCCCCccccCCccccCCCC
Confidence 643 2356667778873 22344 599999873 3889999999999999999999999999985 5
Q ss_pred CCchHHHhHHHHHHhccCCCChHHHHHHhhC
Q 013904 401 PSDCALISLLPFLETLAAADDVRPIIAEKFS 431 (434)
Q Consensus 401 ~~D~eLl~Ll~~Le~L~~~~DVR~~L~k~f~ 431 (434)
..|.||..|++||+.|+.++|||++++++|.
T Consensus 163 ~~D~eL~~L~~yL~~la~~~Dvr~~~~~~w~ 193 (195)
T TIGR02245 163 GTDQELLKLTQYLKTIAELEDFSSLDHKEWE 193 (195)
T ss_pred cccHHHHHHHHHHHHHhcCcccchhhhcccc
Confidence 7999999999999999999999999999885
No 5
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=99.97 E-value=7e-31 Score=239.48 Aligned_cols=137 Identities=28% Similarity=0.464 Sum_probs=117.6
Q ss_pred CCceEEEEeccccccccccccCCCCCce------------eEEEecceeceeEEeecchHHHHHHHhhcCeEEEEEcCCc
Q 013904 259 RKRVTLVLDLDETLVHSSTEPCDDADFT------------FQVFFNMKEHTVYVRQRPFLRTFLERVAEMFEIIVFTASE 326 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~~~~~~~~d~~------------~~v~~~~~~~~~~V~lRP~l~eFL~~lsk~yEIvI~Tas~ 326 (434)
++|++||||||+|||||+..+....... -...|......+++++|||+.+||+++++.|+++|||++.
T Consensus 4 ~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~yel~I~T~~~ 83 (156)
T TIGR02250 4 EKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKLYEMHVYTMGT 83 (156)
T ss_pred CCceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhhcEEEEEeCCc
Confidence 6899999999999999988654332211 0122333467789999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCCCCeeeEEE-ecccceeeCCccccccc-ccCCCCCcEEEEECChhhhccCCCCeeeeeeec
Q 013904 327 SVYAEKLLDILDPDRMLIARRA-YRESCIFSDGSYAKDLT-ILGVDLARIAIIDNSPQVFRLQLDNGIPIKSWF 398 (434)
Q Consensus 327 ~~YA~~Il~~LDP~~~~F~~rl-~Re~c~~~~g~y~KDL~-~Lgrdl~~vIIIDDsp~~~~~qp~NgI~I~~f~ 398 (434)
+.||+.+++.|||.+.+|++|+ +|++|. +.+.|||+ .+|+++++||||||++.+|..||+|+|+|++|.
T Consensus 84 ~~yA~~vl~~ldp~~~~F~~ri~~rd~~~---~~~~KdL~~i~~~d~~~vvivDd~~~~~~~~~~N~i~i~~~~ 154 (156)
T TIGR02250 84 RAYAQAIAKLIDPDGKYFGDRIISRDESG---SPHTKSLLRLFPADESMVVIIDDREDVWPWHKRNLIQIEPYN 154 (156)
T ss_pred HHHHHHHHHHhCcCCCeeccEEEEeccCC---CCccccHHHHcCCCcccEEEEeCCHHHhhcCccCEEEeCCcc
Confidence 9999999999999988997765 599985 78899995 569999999999999999999999999999995
No 6
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=99.96 E-value=1.1e-29 Score=254.09 Aligned_cols=157 Identities=31% Similarity=0.578 Sum_probs=148.4
Q ss_pred CCceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhhcCeEEEEEcCCchHHHHHHHHHhC
Q 013904 259 RKRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVAEMFEIIVFTASESVYAEKLLDILD 338 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~lsk~yEIvI~Tas~~~YA~~Il~~LD 338 (434)
++++||||+|.++|||..|.. ..++.+++|||++.||..++++|||||||+....||.++++.||
T Consensus 187 Qp~yTLVleledvLVhpdws~---------------~tGwRf~kRPgvD~FL~~~a~~yEIVi~sse~gmt~~pl~d~lD 251 (393)
T KOG2832|consen 187 QPPYTLVLELEDVLVHPDWSY---------------KTGWRFKKRPGVDYFLGHLAKYYEIVVYSSEQGMTVFPLLDALD 251 (393)
T ss_pred CCCceEEEEeeeeEeccchhh---------------hcCceeccCchHHHHHHhhcccceEEEEecCCccchhhhHhhcC
Confidence 899999999999999997742 35678999999999999999999999999999999999999999
Q ss_pred CCCCeeeEEEecccceeeCCcccccccccCCCCCcEEEEECChhhhccCCCCeeeeeeecCCCCchHHHhHHHHHHhccC
Q 013904 339 PDRMLIARRAYRESCIFSDGSYAKDLTILGVDLARIAIIDNSPQVFRLQLDNGIPIKSWFDDPSDCALISLLPFLETLAA 418 (434)
Q Consensus 339 P~~~~F~~rl~Re~c~~~~g~y~KDL~~Lgrdl~~vIIIDDsp~~~~~qp~NgI~I~~f~~d~~D~eLl~Ll~~Le~L~~ 418 (434)
|++ +++++++|++|.+.+|.++|||++|+||+++||+||-.+..+.+||+|+|++++|.|+.+|+.|.+|++||+.|+.
T Consensus 252 P~g-~IsYkLfr~~t~y~~G~HvKdls~LNRdl~kVivVd~d~~~~~l~P~N~l~l~~W~Gn~dDt~L~dL~~FL~~ia~ 330 (393)
T KOG2832|consen 252 PKG-YISYKLFRGATKYEEGHHVKDLSKLNRDLQKVIVVDFDANSYKLQPENMLPLEPWSGNDDDTSLFDLLAFLEYIAQ 330 (393)
T ss_pred Ccc-eEEEEEecCcccccCccchhhhhhhccccceeEEEEccccccccCcccccccCcCCCCcccchhhhHHHHHHHHHH
Confidence 996 8999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred --CCChHHHHHHhhC
Q 013904 419 --ADDVRPIIAEKFS 431 (434)
Q Consensus 419 --~~DVR~~L~k~f~ 431 (434)
.+|||++|+..-+
T Consensus 331 ~~~eDvR~vL~~y~~ 345 (393)
T KOG2832|consen 331 QQVEDVRPVLQSYSQ 345 (393)
T ss_pred ccHHHHHHHHHHhcc
Confidence 5999999976544
No 7
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.94 E-value=1.3e-26 Score=208.37 Aligned_cols=145 Identities=48% Similarity=0.877 Sum_probs=129.6
Q ss_pred CceEEEEeccccccccccccC---CCCCceeEEEecceeceeEEeecchHHHHHHHhhcCeEEEEEcCCchHHHHHHHHH
Q 013904 260 KRVTLVLDLDETLVHSSTEPC---DDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVAEMFEIIVFTASESVYAEKLLDI 336 (434)
Q Consensus 260 kK~tLVLDLD~TLVhS~~~~~---~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~lsk~yEIvI~Tas~~~YA~~Il~~ 336 (434)
||++|||||||||||+..... ...++...+.+......+++++|||+.+||+++++.|+++|||++.+.||+.++++
T Consensus 1 ~k~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~~~~~l~I~Ts~~~~~~~~il~~ 80 (148)
T smart00577 1 KKKTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRASELFELVVFTAGLRMYADPVLDL 80 (148)
T ss_pred CCcEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHHhccEEEEEeCCcHHHHHHHHHH
Confidence 589999999999999965322 22334455567778889999999999999999999999999999999999999999
Q ss_pred hCCCCCeeeEEEecccceeeCCcccccccccCCCCCcEEEEECChhhhccCCCCeeeeeeecCCCCch
Q 013904 337 LDPDRMLIARRAYRESCIFSDGSYAKDLTILGVDLARIAIIDNSPQVFRLQLDNGIPIKSWFDDPSDC 404 (434)
Q Consensus 337 LDP~~~~F~~rl~Re~c~~~~g~y~KDL~~Lgrdl~~vIIIDDsp~~~~~qp~NgI~I~~f~~d~~D~ 404 (434)
+++.+.+|..++++++|...++.|.|+|+++|++++++|+|||++..|..++.|||+|++|+++.+|+
T Consensus 81 l~~~~~~f~~i~~~~d~~~~KP~~~k~l~~l~~~p~~~i~i~Ds~~~~~aa~~ngI~i~~f~~~~~d~ 148 (148)
T smart00577 81 LDPKKYFGYRRLFRDECVFVKGKYVKDLSLLGRDLSNVIIIDDSPDSWPFHPENLIPIKPWFGDPDDT 148 (148)
T ss_pred hCcCCCEeeeEEECccccccCCeEeecHHHcCCChhcEEEEECCHHHhhcCccCEEEecCcCCCCCCC
Confidence 99976577999999999988888999999999999999999999999999999999999999998874
No 8
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.93 E-value=3.6e-26 Score=233.74 Aligned_cols=173 Identities=43% Similarity=0.718 Sum_probs=163.2
Q ss_pred CCceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhhcCeEEEEEcCCchHHHHHHHHHhC
Q 013904 259 RKRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVAEMFEIIVFTASESVYAEKLLDILD 338 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~lsk~yEIvI~Tas~~~YA~~Il~~LD 338 (434)
.++++|++|||+||+||........+|...+...+..+.+||..||++.+||..++++|++++||++.+.||++|++.|+
T Consensus 210 ~~~k~L~l~lde~l~~S~~~~~~~~df~~~~e~~~~~~~~~v~kRp~l~~fl~~ls~~~~l~~ft~s~~~y~~~v~d~l~ 289 (390)
T COG5190 210 SPKKTLVLDLDETLVHSSFRYITLLDFLVKVEISLLQHLVYVSKRPELDYFLGKLSKIHELVYFTASVKRYADPVLDILD 289 (390)
T ss_pred CCccccccCCCccceeeccccccccchhhccccccceeEEEEcCChHHHHHHhhhhhhEEEEEEecchhhhcchHHHhcc
Confidence 78899999999999999988777778877777777789999999999999999999999999999999999999999999
Q ss_pred CCCCeeeEEEecccceeeCCcccccccccCCCCCcEEEEECChhhhccCCCCeeeeeeecCCCCchHHHhHHHHHHhccC
Q 013904 339 PDRMLIARRAYRESCIFSDGSYAKDLTILGVDLARIAIIDNSPQVFRLQLDNGIPIKSWFDDPSDCALISLLPFLETLAA 418 (434)
Q Consensus 339 P~~~~F~~rl~Re~c~~~~g~y~KDL~~Lgrdl~~vIIIDDsp~~~~~qp~NgI~I~~f~~d~~D~eLl~Ll~~Le~L~~ 418 (434)
+.+ .|.+++||++|....|.|+|||.++++++..|||||++|.+|.++|+|+|++.+|..+..|.+|..|+++|+.|..
T Consensus 290 ~~k-~~~~~lfr~sc~~~~G~~ikDis~i~r~l~~viiId~~p~SY~~~p~~~i~i~~W~~d~~d~el~~ll~~le~L~~ 368 (390)
T COG5190 290 SDK-VFSHRLFRESCVSYLGVYIKDISKIGRSLDKVIIIDNSPASYEFHPENAIPIEKWISDEHDDELLNLLPFLEDLPD 368 (390)
T ss_pred ccc-eeehhhhcccceeccCchhhhHHhhccCCCceEEeeCChhhhhhCccceeccCcccccccchhhhhhccccccccc
Confidence 998 8999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred --CCChHHHHHHhhCC
Q 013904 419 --ADDVRPIIAEKFSI 432 (434)
Q Consensus 419 --~~DVR~~L~k~f~~ 432 (434)
..||+..+..+-+.
T Consensus 369 ~~~~d~~~~l~~~~~~ 384 (390)
T COG5190 369 RDLKDVSSILQSRLEK 384 (390)
T ss_pred ccchhhhhhhhhhhHh
Confidence 79999998776543
No 9
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.93 E-value=4.1e-26 Score=244.47 Aligned_cols=195 Identities=25% Similarity=0.350 Sum_probs=143.0
Q ss_pred cCCCCCCcCCccccCCCccchhhhccccccccCCCCCCCCcccCChhhhhhcCCCCCCCCCCCCCCCCCCccc--CCceE
Q 013904 186 DMNSAGLCQELTKNSDYSQSFLVSHYDQEVDVNSGNVDLDEVDFDPQLFIRNFLDLSDMDPDLLPALVPKETE--RKRVT 263 (434)
Q Consensus 186 ~~~~~~~c~~~~~~~d~~~~~l~~~c~~e~~~~~~~~d~~~~~f~~~~~I~~~p~ls~~~~~~~~~llpk~~~--~kK~t 263 (434)
.+. ...|.|.++..+ ||++||++++...+.. +.++.....++.......+.+.-.... .+++.
T Consensus 84 ~~~-~~~C~H~~v~~G-----lC~~Cg~~l~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~ 148 (635)
T KOG0323|consen 84 SSS-TSCCEHFTVFGG-----LCASCGKDLESLQGRS---------FDYLVKGLQLSNEMVAFTKTLTTQFSSLNRKKLH 148 (635)
T ss_pred ccc-cCCccceeeccc-----HHHHHHHHHHHhhccc---------hhcccchhhhhhhhhhhhhHHHHHHHHHhhhcce
Confidence 444 689999999999 9999999999885421 112222222222111111222111111 34469
Q ss_pred EEEeccccccccccccCCC---------CC------ceeEEEecceeceeEEeecchHHHHHHHhhcCeEEEEEcCCchH
Q 013904 264 LVLDLDETLVHSSTEPCDD---------AD------FTFQVFFNMKEHTVYVRQRPFLRTFLERVAEMFEIIVFTASESV 328 (434)
Q Consensus 264 LVLDLD~TLVhS~~~~~~~---------~d------~~~~v~~~~~~~~~~V~lRP~l~eFL~~lsk~yEIvI~Tas~~~ 328 (434)
||+|||+||+|++...... .. -.+.+...++...+||++|||+++||++++++|||+|||+|.+.
T Consensus 149 lv~Dld~tllh~~~~~~l~e~~~~l~~~~~~~~sn~dl~~~~~~~~~~~~~vKlRP~~~efL~~~sklfemhVyTmg~R~ 228 (635)
T KOG0323|consen 149 LVLDLDHTLLHTILKSDLSETEKYLKEEAESVESNKDLFRFNPLGHDTEYLVKLRPFVHEFLKEANKLFEMHVYTMGTRD 228 (635)
T ss_pred eehhhhhHHHHhhccchhhhhhhhcccccccccccccceeecccCCCceEEEEeCccHHHHHHHHHhhceeEEEeccchH
Confidence 9999999999997633210 00 01111111455689999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCeeeEEEe-cccceeeCCccccccccc-CCCCCcEEEEECChhhhccCCCCeeeeeeec
Q 013904 329 YAEKLLDILDPDRMLIARRAY-RESCIFSDGSYAKDLTIL-GVDLARIAIIDNSPQVFRLQLDNGIPIKSWF 398 (434)
Q Consensus 329 YA~~Il~~LDP~~~~F~~rl~-Re~c~~~~g~y~KDL~~L-grdl~~vIIIDDsp~~~~~qp~NgI~I~~f~ 398 (434)
||..|+++|||.++||++|++ |+. .....++||..+ .++.++||||||+.++|..++.|.|.|.+|.
T Consensus 229 YA~~i~~liDP~~~lF~dRIisrde---~~~~kt~dL~~~~p~g~smvvIIDDr~dVW~~~~~nLI~i~~y~ 297 (635)
T KOG0323|consen 229 YALEIAKLIDPEGKYFGDRIISRDE---SPFFKTLDLVLLFPCGDSMVVIIDDRSDVWPDHKRNLIQIAPYP 297 (635)
T ss_pred HHHHHHHHhCCCCccccceEEEecC---CCcccccccccCCCCCCccEEEEeCccccccCCCcceEEeeeee
Confidence 999999999999999999998 765 333557888876 6889999999999999999999999999994
No 10
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=98.84 E-value=1e-08 Score=95.60 Aligned_cols=139 Identities=14% Similarity=0.032 Sum_probs=95.8
Q ss_pred eEEEEeccccccccccccCCCCCceeEEEec---ceeceeEEeecchHHHHHHHhh-cCeEEEEEcCC-chHHHHHHHHH
Q 013904 262 VTLVLDLDETLVHSSTEPCDDADFTFQVFFN---MKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTAS-ESVYAEKLLDI 336 (434)
Q Consensus 262 ~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~---~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas-~~~YA~~Il~~ 336 (434)
.++|||||+||..-.........+...-... .......+.++||+.++|+.+. +++.+.|.|++ .+.++..+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~ 82 (174)
T TIGR01685 3 RVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGT 82 (174)
T ss_pred cEEEEeCCCCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHh
Confidence 5789999999976543221111111000000 1223446788999999999998 78999999998 99999999999
Q ss_pred hCCC--C------CeeeEEEecccceeeCC--cccccccc-c--CCCCCcEEEEECChhhhccCCCCeeeeeeecCC
Q 013904 337 LDPD--R------MLIARRAYRESCIFSDG--SYAKDLTI-L--GVDLARIAIIDNSPQVFRLQLDNGIPIKSWFDD 400 (434)
Q Consensus 337 LDP~--~------~~F~~rl~Re~c~~~~g--~y~KDL~~-L--grdl~~vIIIDDsp~~~~~qp~NgI~I~~f~~d 400 (434)
++.. + .+|...+..+.....+. ...+.+.. + |.+++++++|||++..+.....+|+.+......
T Consensus 83 ~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i~v~~g 159 (174)
T TIGR01685 83 FEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVNKVDPSVLKPAQILFFDDRTDNVREVWGYGVTSCYCPSG 159 (174)
T ss_pred CCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHhhhcccCCCCHHHeEEEcChhHhHHHHHHhCCEEEEcCCC
Confidence 9875 1 48888888654221111 11222322 2 588999999999999999888999998877543
No 11
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=98.78 E-value=5.3e-09 Score=102.86 Aligned_cols=100 Identities=16% Similarity=0.159 Sum_probs=88.0
Q ss_pred EEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCC---cccccccccCCCCCcE
Q 013904 299 YVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDG---SYAKDLTILGVDLARI 374 (434)
Q Consensus 299 ~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~Lgrdl~~v 374 (434)
.+.+.||+.++|+.++ ++|.++|.|++.+.++..++++++... ||...+..+++...|+ .|.+.++++|.+++++
T Consensus 107 ~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~~ 185 (260)
T PLN03243 107 LYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEG-FFSVVLAAEDVYRGKPDPEMFMYAAERLGFIPERC 185 (260)
T ss_pred CcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHh-hCcEEEecccCCCCCCCHHHHHHHHHHhCCChHHe
Confidence 3567899999999999 679999999999999999999998765 8999999887765554 6788999999999999
Q ss_pred EEEECChhhhccCCCCeeeeeeecC
Q 013904 375 AIIDNSPQVFRLQLDNGIPIKSWFD 399 (434)
Q Consensus 375 IIIDDsp~~~~~qp~NgI~I~~f~~ 399 (434)
++|+|+..-+.....+|+.+..+.+
T Consensus 186 l~IgDs~~Di~aA~~aG~~~i~v~g 210 (260)
T PLN03243 186 IVFGNSNSSVEAAHDGCMKCVAVAG 210 (260)
T ss_pred EEEcCCHHHHHHHHHcCCEEEEEec
Confidence 9999999999888889998876654
No 12
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=98.77 E-value=6e-09 Score=101.10 Aligned_cols=99 Identities=14% Similarity=0.207 Sum_probs=87.0
Q ss_pred EEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCC---cccccccccCCCCCcE
Q 013904 299 YVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDG---SYAKDLTILGVDLARI 374 (434)
Q Consensus 299 ~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~Lgrdl~~v 374 (434)
.+.+.||+.++|+++. +.+.++|.|++.+.+++.+++.++..+ ||...+..+++...|+ .|.+.++++|.+++++
T Consensus 106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~~ 184 (248)
T PLN02770 106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSD-FFQAVIIGSECEHAKPHPDPYLKALEVLKVSKDHT 184 (248)
T ss_pred cCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChh-hCcEEEecCcCCCCCCChHHHHHHHHHhCCChhHE
Confidence 3567899999999997 789999999999999999999999876 8999999887765554 6788899999999999
Q ss_pred EEEECChhhhccCCCCeeeeeeec
Q 013904 375 AIIDNSPQVFRLQLDNGIPIKSWF 398 (434)
Q Consensus 375 IIIDDsp~~~~~qp~NgI~I~~f~ 398 (434)
++|+|++.-......+|+++..+.
T Consensus 185 l~vgDs~~Di~aA~~aGi~~i~v~ 208 (248)
T PLN02770 185 FVFEDSVSGIKAGVAAGMPVVGLT 208 (248)
T ss_pred EEEcCCHHHHHHHHHCCCEEEEEe
Confidence 999999998888888999887663
No 13
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=98.76 E-value=9.6e-09 Score=101.79 Aligned_cols=97 Identities=8% Similarity=0.063 Sum_probs=77.6
Q ss_pred EeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCCcccccccccCCCCCcEEEEE
Q 013904 300 VRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDGSYAKDLTILGVDLARIAIID 378 (434)
Q Consensus 300 V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g~y~KDL~~Lgrdl~~vIIID 378 (434)
+.+.||+.++|+.|. +.+.++|.|++.+.+++.+++.++... +|...+..+........+.+-+.+++.+++++++|+
T Consensus 141 ~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~-~F~~vi~~~~~~~k~~~~~~~l~~~~~~p~~~l~IG 219 (273)
T PRK13225 141 LQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRS-LFSVVQAGTPILSKRRALSQLVAREGWQPAAVMYVG 219 (273)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh-heEEEEecCCCCCCHHHHHHHHHHhCcChhHEEEEC
Confidence 456899999999998 779999999999999999999999865 888776644322111244556667788999999999
Q ss_pred CChhhhccCCCCeeeeeee
Q 013904 379 NSPQVFRLQLDNGIPIKSW 397 (434)
Q Consensus 379 Dsp~~~~~qp~NgI~I~~f 397 (434)
|++.-......+|+.....
T Consensus 220 Ds~~Di~aA~~AG~~~I~v 238 (273)
T PRK13225 220 DETRDVEAARQVGLIAVAV 238 (273)
T ss_pred CCHHHHHHHHHCCCeEEEE
Confidence 9999888877888887654
No 14
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=98.75 E-value=9.9e-09 Score=98.31 Aligned_cols=98 Identities=15% Similarity=0.080 Sum_probs=83.6
Q ss_pred EeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCC---cccccccccCCCCCcEE
Q 013904 300 VRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDG---SYAKDLTILGVDLARIA 375 (434)
Q Consensus 300 V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~Lgrdl~~vI 375 (434)
+.+.||+.++|+.+. +++.++|.|++.+.++...++.++..+ ||+..+..++....|+ .|.+-++++|.++++++
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~-~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l 170 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDA-HLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAERTL 170 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHH-HCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHHEE
Confidence 567899999999999 689999999999999999999988765 8998888776655554 57788899999999999
Q ss_pred EEECChhhhccCCCCeee-eeeec
Q 013904 376 IIDNSPQVFRLQLDNGIP-IKSWF 398 (434)
Q Consensus 376 IIDDsp~~~~~qp~NgI~-I~~f~ 398 (434)
+|+|++..+.....+|+. +....
T Consensus 171 ~igDs~~di~aA~~aG~~~~~~v~ 194 (224)
T PRK14988 171 FIDDSEPILDAAAQFGIRYCLGVT 194 (224)
T ss_pred EEcCCHHHHHHHHHcCCeEEEEEe
Confidence 999999999888889996 44443
No 15
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=98.75 E-value=3.4e-09 Score=101.58 Aligned_cols=100 Identities=17% Similarity=0.161 Sum_probs=92.2
Q ss_pred EEeecchHHHHHHHhhc-CeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCC---cccccccccCCCCCcE
Q 013904 299 YVRQRPFLRTFLERVAE-MFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDG---SYAKDLTILGVDLARI 374 (434)
Q Consensus 299 ~V~lRP~l~eFL~~lsk-~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~Lgrdl~~v 374 (434)
.+...||+.+||+.+.+ ...+++.|++.+..++.+++.++... ||..++++++....|+ .|.+.+++||.++++|
T Consensus 84 ~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~-~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~C 162 (221)
T COG0637 84 GLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLD-YFDVIVTADDVARGKPAPDIYLLAAERLGVDPEEC 162 (221)
T ss_pred CCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChh-hcchhccHHHHhcCCCCCHHHHHHHHHcCCChHHe
Confidence 36789999999999995 49999999999999999999999887 8999999988877775 7899999999999999
Q ss_pred EEEECChhhhccCCCCeeeeeeecC
Q 013904 375 AIIDNSPQVFRLQLDNGIPIKSWFD 399 (434)
Q Consensus 375 IIIDDsp~~~~~qp~NgI~I~~f~~ 399 (434)
|+|||++...+.....|+.+..+.+
T Consensus 163 vviEDs~~Gi~Aa~aAGm~vv~v~~ 187 (221)
T COG0637 163 VVVEDSPAGIQAAKAAGMRVVGVPA 187 (221)
T ss_pred EEEecchhHHHHHHHCCCEEEEecC
Confidence 9999999999999899999999986
No 16
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=98.72 E-value=9.5e-09 Score=96.62 Aligned_cols=98 Identities=11% Similarity=0.095 Sum_probs=84.3
Q ss_pred EEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCC---cccccccccCCCCCcE
Q 013904 299 YVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDG---SYAKDLTILGVDLARI 374 (434)
Q Consensus 299 ~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~Lgrdl~~v 374 (434)
.+.+.||+.++|+.++ +++.++|.|++.+.++..+++.++... ||...+..+++...++ .+.+.++.++.+++++
T Consensus 80 ~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~-~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~ 158 (214)
T PRK13288 80 LVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDE-FFDVVITLDDVEHAKPDPEPVLKALELLGAKPEEA 158 (214)
T ss_pred hcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh-ceeEEEecCcCCCCCCCcHHHHHHHHHcCCCHHHE
Confidence 4567899999999998 689999999999999999999998876 8999888777655443 5677888889999999
Q ss_pred EEEECChhhhccCCCCeeeeeee
Q 013904 375 AIIDNSPQVFRLQLDNGIPIKSW 397 (434)
Q Consensus 375 IIIDDsp~~~~~qp~NgI~I~~f 397 (434)
++|+|++.-+.....+|++....
T Consensus 159 ~~iGDs~~Di~aa~~aG~~~i~v 181 (214)
T PRK13288 159 LMVGDNHHDILAGKNAGTKTAGV 181 (214)
T ss_pred EEECCCHHHHHHHHHCCCeEEEE
Confidence 99999999888888889887654
No 17
>PRK11587 putative phosphatase; Provisional
Probab=98.70 E-value=1.7e-08 Score=95.64 Aligned_cols=99 Identities=11% Similarity=0.039 Sum_probs=81.8
Q ss_pred EEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCC---cccccccccCCCCCcE
Q 013904 299 YVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDG---SYAKDLTILGVDLARI 374 (434)
Q Consensus 299 ~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~Lgrdl~~v 374 (434)
.+.+.||+.++|+.+. +++.++|.|++...++..+++.+... +|...+..++....++ .|.+.+..+|..++++
T Consensus 81 ~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l~--~~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~~ 158 (218)
T PRK11587 81 GITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGLP--APEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQEC 158 (218)
T ss_pred CceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCCC--CccEEEEHHHhcCCCCCcHHHHHHHHHcCCCcccE
Confidence 4567999999999998 78999999999999988888877752 4666666666554444 6788889999999999
Q ss_pred EEEECChhhhccCCCCeeeeeeecC
Q 013904 375 AIIDNSPQVFRLQLDNGIPIKSWFD 399 (434)
Q Consensus 375 IIIDDsp~~~~~qp~NgI~I~~f~~ 399 (434)
++|+|++.-.......|++...+..
T Consensus 159 l~igDs~~di~aA~~aG~~~i~v~~ 183 (218)
T PRK11587 159 VVVEDAPAGVLSGLAAGCHVIAVNA 183 (218)
T ss_pred EEEecchhhhHHHHHCCCEEEEECC
Confidence 9999999988888888998776654
No 18
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=98.69 E-value=8e-09 Score=94.62 Aligned_cols=96 Identities=17% Similarity=0.172 Sum_probs=81.7
Q ss_pred EeecchHHHHHHHhhcCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCC---cccccccccCCCCCcEEE
Q 013904 300 VRQRPFLRTFLERVAEMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDG---SYAKDLTILGVDLARIAI 376 (434)
Q Consensus 300 V~lRP~l~eFL~~lsk~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~Lgrdl~~vII 376 (434)
+..-|+ .+.|+.+.+.+.++|.|++.+.+++.+++.++..+ ||...+..++....++ .|.+.++++|.+++++|+
T Consensus 87 ~~~~~~-~e~L~~L~~~~~l~I~T~~~~~~~~~~l~~~~l~~-~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~ 164 (188)
T PRK10725 87 VEPLPL-IEVVKAWHGRRPMAVGTGSESAIAEALLAHLGLRR-YFDAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCVV 164 (188)
T ss_pred CCCccH-HHHHHHHHhCCCEEEEcCCchHHHHHHHHhCCcHh-HceEEEehhhccCCCCChHHHHHHHHHcCCCHHHeEE
Confidence 345676 48999998779999999999999999999998765 8999888887765555 577888899999999999
Q ss_pred EECChhhhccCCCCeeeeeee
Q 013904 377 IDNSPQVFRLQLDNGIPIKSW 397 (434)
Q Consensus 377 IDDsp~~~~~qp~NgI~I~~f 397 (434)
|+|++.-+.....+|+++...
T Consensus 165 igDs~~di~aA~~aG~~~i~~ 185 (188)
T PRK10725 165 FEDADFGIQAARAAGMDAVDV 185 (188)
T ss_pred EeccHhhHHHHHHCCCEEEee
Confidence 999999998888889887654
No 19
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=98.68 E-value=1.8e-08 Score=104.37 Aligned_cols=99 Identities=11% Similarity=0.062 Sum_probs=88.0
Q ss_pred EeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCC---cccccccccCCCCCcEE
Q 013904 300 VRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDG---SYAKDLTILGVDLARIA 375 (434)
Q Consensus 300 V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~Lgrdl~~vI 375 (434)
+.+.||+.+||+.|. +++.++|.|++.+.+++.+++.++..+ ||+..+..+++...++ .|.+.++++|.+++++|
T Consensus 215 ~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~-yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~Peecl 293 (381)
T PLN02575 215 YRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRG-FFSVIVAAEDVYRGKPDPEMFIYAAQLLNFIPERCI 293 (381)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHH-HceEEEecCcCCCCCCCHHHHHHHHHHcCCCcccEE
Confidence 457899999999998 679999999999999999999999876 9999999888765554 67889999999999999
Q ss_pred EEECChhhhccCCCCeeeeeeecC
Q 013904 376 IIDNSPQVFRLQLDNGIPIKSWFD 399 (434)
Q Consensus 376 IIDDsp~~~~~qp~NgI~I~~f~~ 399 (434)
+|+|++..+.....+|+.+.....
T Consensus 294 ~IGDS~~DIeAAk~AGm~~IgV~~ 317 (381)
T PLN02575 294 VFGNSNQTVEAAHDARMKCVAVAS 317 (381)
T ss_pred EEcCCHHHHHHHHHcCCEEEEECC
Confidence 999999999888889998887754
No 20
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=98.67 E-value=9.6e-09 Score=95.97 Aligned_cols=98 Identities=13% Similarity=0.068 Sum_probs=83.5
Q ss_pred EEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCC---cccccccccCCCCCcE
Q 013904 299 YVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDG---SYAKDLTILGVDLARI 374 (434)
Q Consensus 299 ~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~Lgrdl~~v 374 (434)
.+.+.||+.++|+++. +++.++|.|++.+.++..+++.++..+ +|...+..+++...++ .|.+.++++|.+++++
T Consensus 73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~-~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~ 151 (205)
T TIGR01454 73 EVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLP-LFDHVIGSDEVPRPKPAPDIVREALRLLDVPPEDA 151 (205)
T ss_pred ccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChh-heeeEEecCcCCCCCCChHHHHHHHHHcCCChhhe
Confidence 4677999999999998 689999999999999999999999876 8998887776544443 5667788889999999
Q ss_pred EEEECChhhhccCCCCeeeeeee
Q 013904 375 AIIDNSPQVFRLQLDNGIPIKSW 397 (434)
Q Consensus 375 IIIDDsp~~~~~qp~NgI~I~~f 397 (434)
++|+|++.-+.....+|+++...
T Consensus 152 l~igD~~~Di~aA~~~Gi~~i~~ 174 (205)
T TIGR01454 152 VMVGDAVTDLASARAAGTATVAA 174 (205)
T ss_pred EEEcCCHHHHHHHHHcCCeEEEE
Confidence 99999998888888899987654
No 21
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=98.66 E-value=1.2e-08 Score=95.01 Aligned_cols=99 Identities=14% Similarity=0.094 Sum_probs=84.0
Q ss_pred EEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCC---cccccccccCCCCCcE
Q 013904 299 YVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDG---SYAKDLTILGVDLARI 374 (434)
Q Consensus 299 ~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~Lgrdl~~v 374 (434)
.+.++||+.++|+.+. +++.++|.|++.+.+++.+++.++..+ +|...+..+.....++ .|.+.++++|.+++++
T Consensus 83 ~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~ 161 (213)
T TIGR01449 83 LTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAK-YFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQM 161 (213)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHh-hCcEEEecCCCCCCCCChHHHHHHHHHcCCChhHe
Confidence 3578999999999998 679999999999999999999998876 7887777665444443 5678888999999999
Q ss_pred EEEECChhhhccCCCCeeeeeeec
Q 013904 375 AIIDNSPQVFRLQLDNGIPIKSWF 398 (434)
Q Consensus 375 IIIDDsp~~~~~qp~NgI~I~~f~ 398 (434)
++|+|++.-+......|+++....
T Consensus 162 ~~igDs~~d~~aa~~aG~~~i~v~ 185 (213)
T TIGR01449 162 VYVGDSRVDIQAARAAGCPSVLLT 185 (213)
T ss_pred EEeCCCHHHHHHHHHCCCeEEEEc
Confidence 999999998888878898887663
No 22
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=98.66 E-value=1.8e-08 Score=88.65 Aligned_cols=111 Identities=16% Similarity=0.121 Sum_probs=78.7
Q ss_pred eEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCC-chHHHHHHHHHhCC
Q 013904 262 VTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTAS-ESVYAEKLLDILDP 339 (434)
Q Consensus 262 ~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas-~~~YA~~Il~~LDP 339 (434)
+.||+||||||........ ..+... .. . .+.||+.++|+.++ +++.++|.|++ .+.++..+++++++
T Consensus 1 kli~~DlD~Tl~~~~~~~~-~~~~~~----~~-----~-~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~ 69 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENIVV-GEDPII----DL-----E-VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFED 69 (128)
T ss_pred CEEEEeCCCCCCCCCcccc-cCCcch----hh-----H-HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccc
Confidence 4789999999997621000 000000 00 0 57899999999998 68999999999 89999999998872
Q ss_pred ------CCCeeeEEEecccceeeCCcccccccccC--CCCCcEEEEECChhhh
Q 013904 340 ------DRMLIARRAYRESCIFSDGSYAKDLTILG--VDLARIAIIDNSPQVF 384 (434)
Q Consensus 340 ------~~~~F~~rl~Re~c~~~~g~y~KDL~~Lg--rdl~~vIIIDDsp~~~ 384 (434)
-..+|...+..+... ....+.+.++++| ..++++++|||++...
T Consensus 70 ~~~i~~l~~~f~~~~~~~~~p-kp~~~~~a~~~lg~~~~p~~~l~igDs~~n~ 121 (128)
T TIGR01681 70 FGIIFPLAEYFDPLTIGYWLP-KSPRLVEIALKLNGVLKPKSILFVDDRPDNN 121 (128)
T ss_pred cccchhhHhhhhhhhhcCCCc-HHHHHHHHHHHhcCCCCcceEEEECCCHhHH
Confidence 223666666543321 1126778888899 9999999999998754
No 23
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=98.61 E-value=3.1e-08 Score=94.86 Aligned_cols=98 Identities=11% Similarity=0.003 Sum_probs=82.2
Q ss_pred EEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCC---cccccccccCCCCCcE
Q 013904 299 YVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDG---SYAKDLTILGVDLARI 374 (434)
Q Consensus 299 ~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~Lgrdl~~v 374 (434)
.+.+.||+.++|+.++ +++.++|.|++...++..+++.++... +|...+..+++...|+ .|.+.++++|.+++++
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~-~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~ 171 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQ-RCAVLIGGDTLAERKPHPLPLLVAAERIGVAPTDC 171 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchh-cccEEEecCcCCCCCCCHHHHHHHHHHhCCChhhE
Confidence 4678999999999998 679999999999999999999998765 7887777666554443 5678888999999999
Q ss_pred EEEECChhhhccCCCCeeeeeee
Q 013904 375 AIIDNSPQVFRLQLDNGIPIKSW 397 (434)
Q Consensus 375 IIIDDsp~~~~~qp~NgI~I~~f 397 (434)
++|+|++.-+......|+.....
T Consensus 172 l~IGDs~~Di~aA~~aG~~~i~v 194 (229)
T PRK13226 172 VYVGDDERDILAARAAGMPSVAA 194 (229)
T ss_pred EEeCCCHHHHHHHHHCCCcEEEE
Confidence 99999999887777888887543
No 24
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=98.56 E-value=7.1e-08 Score=93.23 Aligned_cols=99 Identities=10% Similarity=-0.026 Sum_probs=83.8
Q ss_pred EeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCee-eEEEecccceeeCC---cccccccccCC-CCCc
Q 013904 300 VRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLI-ARRAYRESCIFSDG---SYAKDLTILGV-DLAR 373 (434)
Q Consensus 300 V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F-~~rl~Re~c~~~~g---~y~KDL~~Lgr-dl~~ 373 (434)
+.+.||+.++|++++ +++.++|.|++.+.+++.+++.++..+ +| ...+..++....++ .|.+.++++|. ++++
T Consensus 98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~-~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~~ 176 (253)
T TIGR01422 98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQG-YRPDYNVTTDDVPAGRPAPWMALKNAIELGVYDVAA 176 (253)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcC-CCCceEEccccCCCCCCCHHHHHHHHHHcCCCCchh
Confidence 567899999999998 679999999999999999999998876 54 77777776554454 67788889998 4999
Q ss_pred EEEEECChhhhccCCCCeeeeeeecC
Q 013904 374 IAIIDNSPQVFRLQLDNGIPIKSWFD 399 (434)
Q Consensus 374 vIIIDDsp~~~~~qp~NgI~I~~f~~ 399 (434)
+++|.|++.-+.....+|+....+..
T Consensus 177 ~l~IGDs~~Di~aA~~aGi~~i~v~~ 202 (253)
T TIGR01422 177 CVKVGDTVPDIEEGRNAGMWTVGLIL 202 (253)
T ss_pred eEEECCcHHHHHHHHHCCCeEEEEec
Confidence 99999999999888889998887743
No 25
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=98.54 E-value=3e-08 Score=91.07 Aligned_cols=93 Identities=23% Similarity=0.267 Sum_probs=77.8
Q ss_pred EeecchHHHHHHHhhcCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEeccccee----eCC---cccccccccCCCCC
Q 013904 300 VRQRPFLRTFLERVAEMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIF----SDG---SYAKDLTILGVDLA 372 (434)
Q Consensus 300 V~lRP~l~eFL~~lsk~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~----~~g---~y~KDL~~Lgrdl~ 372 (434)
+...||+.++|+.|+ +.++|.|++.+.++..+++.++... +|+..+..++... .|+ .|.+-++++|.+++
T Consensus 83 ~~~~~g~~~~L~~L~--~~~~i~Tn~~~~~~~~~l~~~gl~~-~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~ 159 (184)
T TIGR01993 83 LKPDPELRNLLLRLP--GRKIIFTNGDRAHARRALNRLGIED-CFDGIFCFDTANPDYLLPKPSPQAYEKALREAGVDPE 159 (184)
T ss_pred CCCCHHHHHHHHhCC--CCEEEEeCCCHHHHHHHHHHcCcHh-hhCeEEEeecccCccCCCCCCHHHHHHHHHHhCCCcc
Confidence 456799999999998 6899999999999999999998765 8998888765543 233 67788888999999
Q ss_pred cEEEEECChhhhccCCCCeeeee
Q 013904 373 RIAIIDNSPQVFRLQLDNGIPIK 395 (434)
Q Consensus 373 ~vIIIDDsp~~~~~qp~NgI~I~ 395 (434)
++++|+|++........+|++..
T Consensus 160 ~~l~vgD~~~di~aA~~~G~~~i 182 (184)
T TIGR01993 160 RAIFFDDSARNIAAAKALGMKTV 182 (184)
T ss_pred ceEEEeCCHHHHHHHHHcCCEEe
Confidence 99999999988877778888753
No 26
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=98.53 E-value=7.6e-08 Score=91.14 Aligned_cols=103 Identities=17% Similarity=0.073 Sum_probs=87.9
Q ss_pred EeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCC---cccccccccCCCCCcEE
Q 013904 300 VRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDG---SYAKDLTILGVDLARIA 375 (434)
Q Consensus 300 V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~Lgrdl~~vI 375 (434)
..+.||+.++|+.+. +++.++|.|++.+..++.+++.++..+ +|...+.++.....++ .|..-++.+|.++++++
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~ 169 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRD-YFDALASAEKLPYSKPHPEVYLNCAAKLGVDPLTCV 169 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchh-cccEEEEcccCCCCCCCHHHHHHHHHHcCCCHHHeE
Confidence 567899999999998 789999999999999999999998776 8998888776554443 67788888999999999
Q ss_pred EEECChhhhccCCCCeeeeeeecCCCCc
Q 013904 376 IIDNSPQVFRLQLDNGIPIKSWFDDPSD 403 (434)
Q Consensus 376 IIDDsp~~~~~qp~NgI~I~~f~~d~~D 403 (434)
+|+|++.-+......|++...+......
T Consensus 170 ~igDs~~Di~aA~~aG~~~i~v~~~~~~ 197 (222)
T PRK10826 170 ALEDSFNGMIAAKAARMRSIVVPAPEQQ 197 (222)
T ss_pred EEcCChhhHHHHHHcCCEEEEecCCccC
Confidence 9999999998888999998777655433
No 27
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=98.50 E-value=4.9e-08 Score=88.89 Aligned_cols=93 Identities=13% Similarity=0.150 Sum_probs=77.7
Q ss_pred EeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCC---cccccccccCCCCCcEE
Q 013904 300 VRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDG---SYAKDLTILGVDLARIA 375 (434)
Q Consensus 300 V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~Lgrdl~~vI 375 (434)
+.+.||+.++|+.+. +.+.++|.|++ .+++.+++.++..+ ||...+..+.....++ .|.+-+++++..++++|
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~-~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v 163 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTD-YFDAIVDADEVKEGKPHPETFLLAAELLGVSPNECV 163 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHH-HCCEeeehhhCCCCCCChHHHHHHHHHcCCCHHHeE
Confidence 578999999999998 57999999988 77999999988765 8998888766554443 56777888899999999
Q ss_pred EEECChhhhccCCCCeeeee
Q 013904 376 IIDNSPQVFRLQLDNGIPIK 395 (434)
Q Consensus 376 IIDDsp~~~~~qp~NgI~I~ 395 (434)
+|+|++.-+.....+|++..
T Consensus 164 ~IgD~~~di~aA~~~G~~~i 183 (185)
T TIGR02009 164 VFEDALAGVQAARAAGMFAV 183 (185)
T ss_pred EEeCcHhhHHHHHHCCCeEe
Confidence 99999998888878888754
No 28
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=98.49 E-value=9.8e-08 Score=89.85 Aligned_cols=95 Identities=13% Similarity=0.134 Sum_probs=80.5
Q ss_pred EeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCC-CeeeEEEecccceeeCC---cccccccccCCC-CCc
Q 013904 300 VRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDR-MLIARRAYRESCIFSDG---SYAKDLTILGVD-LAR 373 (434)
Q Consensus 300 V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~-~~F~~rl~Re~c~~~~g---~y~KDL~~Lgrd-l~~ 373 (434)
..+.||+.+||+.++ +++.++|.|++...++..+++.++... .+|...+..++-...++ .|.+.++++|.. +++
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~ 165 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGVQDVQS 165 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcCCCChhH
Confidence 468999999999997 789999999999999999999998762 58998888766443343 667788888886 799
Q ss_pred EEEEECChhhhccCCCCeeee
Q 013904 374 IAIIDNSPQVFRLQLDNGIPI 394 (434)
Q Consensus 374 vIIIDDsp~~~~~qp~NgI~I 394 (434)
+++|+|++.-.......|+++
T Consensus 166 ~~~igD~~~Di~aa~~aG~~~ 186 (220)
T TIGR03351 166 VAVAGDTPNDLEAGINAGAGA 186 (220)
T ss_pred eEEeCCCHHHHHHHHHCCCCe
Confidence 999999999888888889887
No 29
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=98.46 E-value=2.8e-07 Score=80.31 Aligned_cols=116 Identities=16% Similarity=0.177 Sum_probs=82.7
Q ss_pred eEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCc--------hHHHHH
Q 013904 262 VTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASE--------SVYAEK 332 (434)
Q Consensus 262 ~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~--------~~YA~~ 332 (434)
+.|+||+||||++.... ..........|++.++|+++. +.+.++|.|++. ..++..
T Consensus 1 k~~~~D~dgtL~~~~~~---------------~~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~ 65 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPY---------------VDDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVAR 65 (132)
T ss_pred CEEEEeCCCceecCCCC---------------CCCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHH
Confidence 47899999999964110 001123457899999999998 779999999999 888999
Q ss_pred HHHHhCCCCCeeeEEEecccceeeC-Cccccccccc-CCCCCcEEEEEC-ChhhhccCCCCeeeee
Q 013904 333 LLDILDPDRMLIARRAYRESCIFSD-GSYAKDLTIL-GVDLARIAIIDN-SPQVFRLQLDNGIPIK 395 (434)
Q Consensus 333 Il~~LDP~~~~F~~rl~Re~c~~~~-g~y~KDL~~L-grdl~~vIIIDD-sp~~~~~qp~NgI~I~ 395 (434)
+++.++.. |...++.......+ ..|.+-++++ +.+++++++|+| ...-+.....+|+...
T Consensus 66 ~l~~~~l~---~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~~i 128 (132)
T TIGR01662 66 RLEELGVP---IDVLYACPHCRKPKPGMFLEALKRFNEIDPEESVYVGDQDLTDLQAAKRAGLAFI 128 (132)
T ss_pred HHHHCCCC---EEEEEECCCCCCCChHHHHHHHHHcCCCChhheEEEcCCCcccHHHHHHCCCeEE
Confidence 99998775 22223332211111 2567788888 599999999999 6777766667777654
No 30
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=98.44 E-value=1.9e-07 Score=83.70 Aligned_cols=118 Identities=17% Similarity=0.199 Sum_probs=83.5
Q ss_pred eEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCch-------------
Q 013904 262 VTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASES------------- 327 (434)
Q Consensus 262 ~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~------------- 327 (434)
++|+||+||||+....... ...+..+...||+.++|+.|+ ++|.++|.|++.+
T Consensus 1 ~~~~~d~dgtl~~~~~~~~-------------~~~~~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~ 67 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSDY-------------PRSLDDWQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRA 67 (147)
T ss_pred CeEEEeCCCceeccCCccc-------------CCCHHHeEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHH
Confidence 4789999999998753110 011122467899999999998 7899999999874
Q ss_pred --HHHHHHHHHhCCCCCeeeEEEec-----ccceeeCC---cccccccccCCCCCcEEEEECChhhhccCCCCeeeee
Q 013904 328 --VYAEKLLDILDPDRMLIARRAYR-----ESCIFSDG---SYAKDLTILGVDLARIAIIDNSPQVFRLQLDNGIPIK 395 (434)
Q Consensus 328 --~YA~~Il~~LDP~~~~F~~rl~R-----e~c~~~~g---~y~KDL~~Lgrdl~~vIIIDDsp~~~~~qp~NgI~I~ 395 (434)
.++..+++.++.. +...++. +.....++ .+.+-++.+|.+++++++|.|++.-.......||...
T Consensus 68 ~~~~~~~~l~~~~l~---~~~~~~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~~v 142 (147)
T TIGR01656 68 PNGRVLELLRQLGVA---VDGVLFCPHHPADNCSCRKPKPGLILEALKRLGVDASRSLVVGDRLRDLQAARNAGLAAV 142 (147)
T ss_pred HHHHHHHHHHhCCCc---eeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCCEE
Confidence 5677778887764 2222221 22111222 5667778889999999999999988888777888765
No 31
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=98.43 E-value=1.1e-07 Score=98.31 Aligned_cols=135 Identities=27% Similarity=0.465 Sum_probs=103.9
Q ss_pred CCceEEEEeccccccccccccCCCCCc----------eeEEEecceeceeEEeecchHHHHHHHhhcCeEEEEEcCCchH
Q 013904 259 RKRVTLVLDLDETLVHSSTEPCDDADF----------TFQVFFNMKEHTVYVRQRPFLRTFLERVAEMFEIIVFTASESV 328 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~~~~~~~~d~----------~~~v~~~~~~~~~~V~lRP~l~eFL~~lsk~yEIvI~Tas~~~ 328 (434)
.++..||.|+|.|.+|++..+..+... ...-.+......++++.||++..|+...++.|++++||++.+.
T Consensus 24 ~~~~~l~~~~~~~~~h~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~i~~~~e~~~~~~~~~~ 103 (390)
T COG5190 24 DKKLILVVDLDQTIIHTTVDPNDPNNVNQSLERTLKSVNDRDPVQEKCAYYVKARPKLFPFLTKISPLYELHIYTMGTRA 103 (390)
T ss_pred CcccccccccccceecccccCCCCCchhhhhhccccchhccccccccccceeeecccccchhhhhchhcceeeEeecccc
Confidence 577889999999999998765211100 0011122245678999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCeeeEEEecccceeeCCccccccccc-CCCCCcEEEEECChhhh---ccCCCCeeeeee
Q 013904 329 YAEKLLDILDPDRMLIARRAYRESCIFSDGSYAKDLTIL-GVDLARIAIIDNSPQVF---RLQLDNGIPIKS 396 (434)
Q Consensus 329 YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g~y~KDL~~L-grdl~~vIIIDDsp~~~---~~qp~NgI~I~~ 396 (434)
||+.+++++||.+++|..+....+- ....-.|-++++ ..+.+.++++||+++.| ... .|.+...+
T Consensus 104 ~~~~~~~i~d~~g~~~~d~~~~~~~--~~~~~~~s~~~l~p~~~n~~vi~~d~~~~~~~~d~~-~~~v~~~~ 172 (390)
T COG5190 104 YAERIAKIIDPTGKLFNDRILSRDE--SGSLSQKSLSRLFPKDQNMVVIIDDRGDVWGVGDMN-SNFVAKSP 172 (390)
T ss_pred chhhhhhcccccccccccccccccc--cccchhhhhhhcCccccccccccccccccCCccchh-hhhhcccc
Confidence 9999999999999999988883332 233556777776 78899999999999999 333 45555555
No 32
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=98.43 E-value=3.3e-07 Score=89.63 Aligned_cols=100 Identities=11% Similarity=0.015 Sum_probs=82.5
Q ss_pred EeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCC---cccccccccCCC-CCcE
Q 013904 300 VRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDG---SYAKDLTILGVD-LARI 374 (434)
Q Consensus 300 V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~Lgrd-l~~v 374 (434)
+.+.||+.++|+.+. +.+.++|.|++.+..++.+++.+...+-+|...+..++....++ .|.+.++++|.. ++++
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e~ 179 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGVYDVAAC 179 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCCCCCcce
Confidence 467899999999998 68999999999999999999988776633477777777655553 677888899975 6999
Q ss_pred EEEECChhhhccCCCCeeeeeeecC
Q 013904 375 AIIDNSPQVFRLQLDNGIPIKSWFD 399 (434)
Q Consensus 375 IIIDDsp~~~~~qp~NgI~I~~f~~ 399 (434)
++|+|++.-+.....+|++......
T Consensus 180 l~IGDs~~Di~aA~~aG~~~i~v~~ 204 (267)
T PRK13478 180 VKVDDTVPGIEEGLNAGMWTVGVIL 204 (267)
T ss_pred EEEcCcHHHHHHHHHCCCEEEEEcc
Confidence 9999999999888889988776643
No 33
>PLN02940 riboflavin kinase
Probab=98.40 E-value=1.3e-07 Score=97.97 Aligned_cols=99 Identities=8% Similarity=0.029 Sum_probs=84.4
Q ss_pred EeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHH-HhCCCCCeeeEEEecccceeeCC---cccccccccCCCCCcE
Q 013904 300 VRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLD-ILDPDRMLIARRAYRESCIFSDG---SYAKDLTILGVDLARI 374 (434)
Q Consensus 300 V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~-~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~Lgrdl~~v 374 (434)
+.+.||+.++|++|. +.+.++|.|++.+.++..+++ .++..+ +|+.++..+++...++ .|.+.++.+|..++++
T Consensus 92 ~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~-~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~~~ 170 (382)
T PLN02940 92 IKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKE-SFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEPSNC 170 (382)
T ss_pred CCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHh-hCCEEEehhhcCCCCCCHHHHHHHHHHcCCChhHE
Confidence 467899999999998 679999999999999999887 566554 8999999888766554 6788889999999999
Q ss_pred EEEECChhhhccCCCCeeeeeeecC
Q 013904 375 AIIDNSPQVFRLQLDNGIPIKSWFD 399 (434)
Q Consensus 375 IIIDDsp~~~~~qp~NgI~I~~f~~ 399 (434)
++|+|++.-...+...|+.+.....
T Consensus 171 l~VGDs~~Di~aA~~aGi~~I~v~~ 195 (382)
T PLN02940 171 LVIEDSLPGVMAGKAAGMEVIAVPS 195 (382)
T ss_pred EEEeCCHHHHHHHHHcCCEEEEECC
Confidence 9999999988888888988766643
No 34
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=98.40 E-value=1.1e-07 Score=89.76 Aligned_cols=96 Identities=8% Similarity=0.028 Sum_probs=80.5
Q ss_pred EEeecchHHHHHHHhhcCeEEEEEcCCchHHHHHHHHHhCCCCCeee-EEEecccceeeCC---cccccccccCCCCCcE
Q 013904 299 YVRQRPFLRTFLERVAEMFEIIVFTASESVYAEKLLDILDPDRMLIA-RRAYRESCIFSDG---SYAKDLTILGVDLARI 374 (434)
Q Consensus 299 ~V~lRP~l~eFL~~lsk~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~-~rl~Re~c~~~~g---~y~KDL~~Lgrdl~~v 374 (434)
.....||+.++|+.+. +.++|.|++.+.+++.+++.++... +|. ..+..++....|+ .|.+.++++|..++++
T Consensus 86 ~~~~~~gv~~~L~~L~--~~~~ivTn~~~~~~~~~l~~~~l~~-~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~ 162 (221)
T PRK10563 86 ELEPIAGANALLESIT--VPMCVVSNGPVSKMQHSLGKTGMLH-YFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVENC 162 (221)
T ss_pred cCCcCCCHHHHHHHcC--CCEEEEeCCcHHHHHHHHHhcChHH-hCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHHe
Confidence 3567899999999994 8999999999999999999988876 785 4555655554443 6788889999999999
Q ss_pred EEEECChhhhccCCCCeeeeeee
Q 013904 375 AIIDNSPQVFRLQLDNGIPIKSW 397 (434)
Q Consensus 375 IIIDDsp~~~~~qp~NgI~I~~f 397 (434)
++|+|++..+......|+++.-+
T Consensus 163 l~igDs~~di~aA~~aG~~~i~~ 185 (221)
T PRK10563 163 ILVDDSSAGAQSGIAAGMEVFYF 185 (221)
T ss_pred EEEeCcHhhHHHHHHCCCEEEEE
Confidence 99999999998888899988755
No 35
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=98.39 E-value=1.9e-07 Score=92.16 Aligned_cols=96 Identities=14% Similarity=0.113 Sum_probs=78.9
Q ss_pred EeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCC---cccccccccCCCCCcEE
Q 013904 300 VRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDG---SYAKDLTILGVDLARIA 375 (434)
Q Consensus 300 V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~Lgrdl~~vI 375 (434)
+.++||+.++|+.+. +++.++|.|++...++..+++.++..+ +|...+..+.....+. .|.+-++++|.++++++
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~-~f~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~l 178 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGR-YFRWIIGGDTLPQKKPDPAALLFVMKMAGVPPSQSL 178 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHh-hCeEEEecCCCCCCCCCcHHHHHHHHHhCCChhHEE
Confidence 457899999999998 689999999999999999999988765 8887776665443333 35677778899999999
Q ss_pred EEECChhhhccCCCCeeeeee
Q 013904 376 IIDNSPQVFRLQLDNGIPIKS 396 (434)
Q Consensus 376 IIDDsp~~~~~qp~NgI~I~~ 396 (434)
+|+|++.-......+|+....
T Consensus 179 ~IGD~~~Di~aA~~aGi~~i~ 199 (272)
T PRK13223 179 FVGDSRSDVLAAKAAGVQCVA 199 (272)
T ss_pred EECCCHHHHHHHHHCCCeEEE
Confidence 999999988887788886533
No 36
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.38 E-value=3.7e-07 Score=76.72 Aligned_cols=115 Identities=18% Similarity=0.215 Sum_probs=79.5
Q ss_pred EEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhhc-CeEEEEEcCCchHHHHHHHHHhCCCC
Q 013904 263 TLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVAE-MFEIIVFTASESVYAEKLLDILDPDR 341 (434)
Q Consensus 263 tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~lsk-~yEIvI~Tas~~~YA~~Il~~LDP~~ 341 (434)
++|||+||||+........ ......+|++.+||+++.+ .+.++|.|++.+.++..+++.+....
T Consensus 1 ~~vfD~D~tl~~~~~~~~~---------------~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~ 65 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAE---------------IEELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDD 65 (139)
T ss_pred CeEEccCCceEccCccccc---------------cccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCch
Confidence 4799999999877431110 2345789999999999995 69999999999999999999987643
Q ss_pred CeeeEEEecccceee----------------CC---cccccccccCCCCCcEEEEECChhhhccCCCCeee
Q 013904 342 MLIARRAYRESCIFS----------------DG---SYAKDLTILGVDLARIAIIDNSPQVFRLQLDNGIP 393 (434)
Q Consensus 342 ~~F~~rl~Re~c~~~----------------~g---~y~KDL~~Lgrdl~~vIIIDDsp~~~~~qp~NgI~ 393 (434)
+|..++..+..... ++ .+..-++.++..++.++.|+|++.-.......|++
T Consensus 66 -~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igD~~~d~~~~~~~g~~ 135 (139)
T cd01427 66 -YFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKLLAALKLLGVDPEEVLMVGDSLNDIEMAKAAGGL 135 (139)
T ss_pred -hhhheeccchhhhhcccccccccccccccCCCCHHHHHHHHHHcCCChhhEEEeCCCHHHHHHHHHcCCc
Confidence 45555543332211 11 22334455577789999999999766544333443
No 37
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=98.38 E-value=6.6e-07 Score=82.41 Aligned_cols=115 Identities=12% Similarity=0.135 Sum_probs=81.2
Q ss_pred eEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCch-------------
Q 013904 262 VTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASES------------- 327 (434)
Q Consensus 262 ~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~------------- 327 (434)
+.|.||+||||+-.. .+. ...-.+.+.||+.++|++|+ ++|.++|.|++..
T Consensus 2 ~~~~~D~Dgtl~~~~-------~~~--------~~~~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~ 66 (176)
T TIGR00213 2 KAIFLDRDGTINIDH-------GYV--------HEIDNFEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQ 66 (176)
T ss_pred CEEEEeCCCCEeCCC-------CCC--------CCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHH
Confidence 578999999998321 110 11123457799999999999 6799999999984
Q ss_pred --HHHHHHHHHhCCCCCeeeEEEec-----------ccceeeCC---cccccccccCCCCCcEEEEECChhhhccCCCCe
Q 013904 328 --VYAEKLLDILDPDRMLIARRAYR-----------ESCIFSDG---SYAKDLTILGVDLARIAIIDNSPQVFRLQLDNG 391 (434)
Q Consensus 328 --~YA~~Il~~LDP~~~~F~~rl~R-----------e~c~~~~g---~y~KDL~~Lgrdl~~vIIIDDsp~~~~~qp~Ng 391 (434)
.+...++..+... |...++. +.|...|+ .|.+.++++|.+++++++|+|++.-......+|
T Consensus 67 ~~~~~~~~l~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG 143 (176)
T TIGR00213 67 LTEWMDWSLAERDVD---LDGIYYCPHHPEGVEEFRQVCDCRKPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAK 143 (176)
T ss_pred HHHHHHHHHHHcCCC---ccEEEECCCCCcccccccCCCCCCCCCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCC
Confidence 3444555554332 4444442 23333333 677888899999999999999999888887888
Q ss_pred eee
Q 013904 392 IPI 394 (434)
Q Consensus 392 I~I 394 (434)
++.
T Consensus 144 ~~~ 146 (176)
T TIGR00213 144 VKT 146 (176)
T ss_pred CcE
Confidence 865
No 38
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=98.34 E-value=4.4e-07 Score=85.23 Aligned_cols=98 Identities=15% Similarity=0.135 Sum_probs=79.2
Q ss_pred EEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCC---cccccccccCCCCCcE
Q 013904 299 YVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDG---SYAKDLTILGVDLARI 374 (434)
Q Consensus 299 ~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~Lgrdl~~v 374 (434)
....+||+.+||+.+. +.+.++|.|++...++..+++.++..+ +|...+..+.....++ .+.+-+++++.+++++
T Consensus 91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 169 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIAD-YFSVVIGGDSLPNKKPDPAPLLLACEKLGLDPEEM 169 (226)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCcc-CccEEEcCCCCCCCCcChHHHHHHHHHcCCChhhe
Confidence 3668999999999999 679999999999999999999998765 7877666555433332 4567778889999999
Q ss_pred EEEECChhhhccCCCCeeeeeee
Q 013904 375 AIIDNSPQVFRLQLDNGIPIKSW 397 (434)
Q Consensus 375 IIIDDsp~~~~~qp~NgI~I~~f 397 (434)
++|+|++.-+......|++....
T Consensus 170 i~igD~~~Di~~a~~~g~~~i~v 192 (226)
T PRK13222 170 LFVGDSRNDIQAARAAGCPSVGV 192 (226)
T ss_pred EEECCCHHHHHHHHHCCCcEEEE
Confidence 99999998887777788765544
No 39
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=98.31 E-value=1.6e-06 Score=79.57 Aligned_cols=123 Identities=16% Similarity=0.135 Sum_probs=91.6
Q ss_pred eEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCC---------------
Q 013904 262 VTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTAS--------------- 325 (434)
Q Consensus 262 ~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas--------------- 325 (434)
+.+.||.||||++.... .| . ....-.+++-||+.++|++|. ++|.++|.|+.
T Consensus 2 ~~~~~d~dg~l~~~~~~-----~~--~-----~~~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~ 69 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPS-----DF--Q-----VDALEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDG 69 (161)
T ss_pred CEEEEeCCCCccccCCC-----cc--c-----cCCHHHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHH
Confidence 57899999999985321 00 0 011124677899999999999 68999999996
Q ss_pred chHHHHHHHHHhCCCCCeeeEEEec-----ccceeeCC---cccccccccCCCCCcEEEEECChhhhccCCCCeeeeeee
Q 013904 326 ESVYAEKLLDILDPDRMLIARRAYR-----ESCIFSDG---SYAKDLTILGVDLARIAIIDNSPQVFRLQLDNGIPIKSW 397 (434)
Q Consensus 326 ~~~YA~~Il~~LDP~~~~F~~rl~R-----e~c~~~~g---~y~KDL~~Lgrdl~~vIIIDDsp~~~~~qp~NgI~I~~f 397 (434)
...++..+++.++.. |...++. +.+...++ .+..-++.++.+++++++|.|+..-......+|+....+
T Consensus 70 ~~~~~~~~l~~~gl~---fd~ii~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i~~ 146 (161)
T TIGR01261 70 PHNLMLQIFRSQGII---FDDVLICPHFPDDNCDCRKPKIKLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGIQY 146 (161)
T ss_pred HHHHHHHHHHHCCCc---eeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEEEE
Confidence 366888888888885 7666653 55544444 445666778899999999999998787787899998876
Q ss_pred cC
Q 013904 398 FD 399 (434)
Q Consensus 398 ~~ 399 (434)
..
T Consensus 147 ~~ 148 (161)
T TIGR01261 147 DE 148 (161)
T ss_pred Ch
Confidence 54
No 40
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=98.30 E-value=2.9e-07 Score=86.59 Aligned_cols=98 Identities=15% Similarity=0.188 Sum_probs=73.7
Q ss_pred EEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEeccc-----------ceee-CC-cccccc
Q 013904 299 YVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRES-----------CIFS-DG-SYAKDL 364 (434)
Q Consensus 299 ~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~-----------c~~~-~g-~y~KDL 364 (434)
.+.++||+.+||+.+. +++.++|.|++...++..+++.++... +|...+.-++ +... ++ .+.+-+
T Consensus 83 ~~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 161 (219)
T TIGR00338 83 NLPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDA-AFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILL 161 (219)
T ss_pred cCCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc-eEeeEEEEECCEEEEEecCcccCCcccHHHHHHHH
Confidence 3568999999999999 579999999999999999999988765 6765443211 1100 11 344555
Q ss_pred cccCCCCCcEEEEECChhhhccCCCCeeeeeeec
Q 013904 365 TILGVDLARIAIIDNSPQVFRLQLDNGIPIKSWF 398 (434)
Q Consensus 365 ~~Lgrdl~~vIIIDDsp~~~~~qp~NgI~I~~f~ 398 (434)
++++.+++++++|+|++.-+......|+.+ .|.
T Consensus 162 ~~~~~~~~~~i~iGDs~~Di~aa~~ag~~i-~~~ 194 (219)
T TIGR00338 162 RKEGISPENTVAVGDGANDLSMIKAAGLGI-AFN 194 (219)
T ss_pred HHcCCCHHHEEEEECCHHHHHHHHhCCCeE-EeC
Confidence 667889999999999998887766778876 453
No 41
>PHA02597 30.2 hypothetical protein; Provisional
Probab=98.30 E-value=1.3e-07 Score=87.71 Aligned_cols=98 Identities=9% Similarity=0.100 Sum_probs=71.8
Q ss_pred EEeecchHHHHHHHhhcCeEEEEEcCCchHHHHHHHHHhCCCC---CeeeEEEecccceeeCCcccccccccCCCCCcEE
Q 013904 299 YVRQRPFLRTFLERVAEMFEIIVFTASESVYAEKLLDILDPDR---MLIARRAYRESCIFSDGSYAKDLTILGVDLARIA 375 (434)
Q Consensus 299 ~V~lRP~l~eFL~~lsk~yEIvI~Tas~~~YA~~Il~~LDP~~---~~F~~rl~Re~c~~~~g~y~KDL~~Lgrdl~~vI 375 (434)
.+...||+.++|+.|++.+.+++.|++.......++..+...+ .+|+..+..+........+.+.++++| ++.+|
T Consensus 72 ~~~~~pG~~e~L~~L~~~~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~~~~~~~kp~~~~~a~~~~~--~~~~v 149 (197)
T PHA02597 72 YLSAYDDALDVINKLKEDYDFVAVTALGDSIDALLNRQFNLNALFPGAFSEVLMCGHDESKEKLFIKAKEKYG--DRVVC 149 (197)
T ss_pred hccCCCCHHHHHHHHHhcCCEEEEeCCccchhHHHHhhCCHHHhCCCcccEEEEeccCcccHHHHHHHHHHhC--CCcEE
Confidence 3568999999999999777887777776665555666664432 256666665554322225566777788 78899
Q ss_pred EEECChhhhccCCCC--eeeeeeec
Q 013904 376 IIDNSPQVFRLQLDN--GIPIKSWF 398 (434)
Q Consensus 376 IIDDsp~~~~~qp~N--gI~I~~f~ 398 (434)
+|||++........+ ||++.-+.
T Consensus 150 ~vgDs~~di~aA~~a~~Gi~~i~~~ 174 (197)
T PHA02597 150 FVDDLAHNLDAAHEALSQLPVIHML 174 (197)
T ss_pred EeCCCHHHHHHHHHHHcCCcEEEec
Confidence 999999999888888 99988664
No 42
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=98.28 E-value=2.8e-06 Score=78.36 Aligned_cols=120 Identities=14% Similarity=0.076 Sum_probs=83.7
Q ss_pred ceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCch------------
Q 013904 261 RVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASES------------ 327 (434)
Q Consensus 261 K~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~------------ 327 (434)
.+.|+||+||||+-.... + ....-.+...||+.++|++++ +.|.++|.|++..
T Consensus 3 ~~~~~~d~~~t~~~~~~~------~--------~~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~ 68 (181)
T PRK08942 3 MKAIFLDRDGVINVDSDG------Y--------VKSPDEWIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLN 68 (181)
T ss_pred ccEEEEECCCCcccCCcc------c--------cCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHH
Confidence 468999999998654210 0 011113457899999999999 5799999998863
Q ss_pred ---HHHHHHHHHhCCCCCeeeEEEeccc-----ceeeCC---cccccccccCCCCCcEEEEECChhhhccCCCCeeeeee
Q 013904 328 ---VYAEKLLDILDPDRMLIARRAYRES-----CIFSDG---SYAKDLTILGVDLARIAIIDNSPQVFRLQLDNGIPIKS 396 (434)
Q Consensus 328 ---~YA~~Il~~LDP~~~~F~~rl~Re~-----c~~~~g---~y~KDL~~Lgrdl~~vIIIDDsp~~~~~qp~NgI~I~~ 396 (434)
.+...+++.++. +|...++... +...++ .|.+.+..+|.+++++++|+|++.-.......|+.+..
T Consensus 69 ~~~~~~~~~l~~~g~---~f~~i~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~~i~ 145 (181)
T PRK08942 69 ALHEKMDWSLADRGG---RLDGIYYCPHHPEDGCDCRKPKPGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTPVL 145 (181)
T ss_pred HHHHHHHHHHHHcCC---ccceEEECCCCCCCCCcCCCCCHHHHHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCeEEE
Confidence 334455555543 3666665432 223333 66788888999999999999999888777778876554
Q ss_pred e
Q 013904 397 W 397 (434)
Q Consensus 397 f 397 (434)
.
T Consensus 146 v 146 (181)
T PRK08942 146 V 146 (181)
T ss_pred E
Confidence 4
No 43
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.27 E-value=2.4e-06 Score=85.77 Aligned_cols=122 Identities=16% Similarity=0.177 Sum_probs=87.6
Q ss_pred CCceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeec-chHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHH
Q 013904 259 RKRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQR-PFLRTFLERVA-EMFEIIVFTASESVYAEKLLDI 336 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lR-P~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~ 336 (434)
+.++.+||||||||+.... .|.+| |++.++|+++. +++.++|||++.+.++..+++.
T Consensus 124 ~~~kvIvFDLDgTLi~~~~---------------------~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~ 182 (301)
T TIGR01684 124 EPPHVVVFDLDSTLITDEE---------------------PVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRK 182 (301)
T ss_pred ccceEEEEecCCCCcCCCC---------------------ccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHH
Confidence 6778999999999997632 26689 99999999999 5699999999999999999999
Q ss_pred hCCCCCeeeEEEecccceeeCC----------------cccccc-----------------cccCCC-CCcEEEEECChh
Q 013904 337 LDPDRMLIARRAYRESCIFSDG----------------SYAKDL-----------------TILGVD-LARIAIIDNSPQ 382 (434)
Q Consensus 337 LDP~~~~F~~rl~Re~c~~~~g----------------~y~KDL-----------------~~Lgrd-l~~vIIIDDsp~ 382 (434)
++..+ +|...+..++....++ .+..|. ++.|.+ .+-+-+|||-+.
T Consensus 183 lGLd~-YFdvIIs~Gdv~~~kp~~e~~d~~~~~~~~~~~f~~d~~~~~~lPKSprvvl~yL~~~gvn~~KtitLVDDl~~ 261 (301)
T TIGR01684 183 VKLDR-YFDIIISGGHKAEEYSTMSTEDRQYRYVFTKTPFYLNTTDGKRLPKSPRVVLWYLYDLGVNYFKSITLVDDLAD 261 (301)
T ss_pred cCCCc-ccCEEEECCccccCCCCccccccccceEEecCCeEEeCCCCCcCCCCCeehHHHHHHcCCceeeeEEEeccCcc
Confidence 99986 8877777554433221 111222 222433 334567888876
Q ss_pred hhccCCCCeeeeeeecCCCCc
Q 013904 383 VFRLQLDNGIPIKSWFDDPSD 403 (434)
Q Consensus 383 ~~~~qp~NgI~I~~f~~d~~D 403 (434)
. ..+=+|-+.++..-.+.+|
T Consensus 262 N-n~~YD~fv~v~rcp~P~~D 281 (301)
T TIGR01684 262 N-NFNYDYFVNVSRCPVPVND 281 (301)
T ss_pred c-CccceeEEEeeeCCCCchH
Confidence 3 3344677777777665555
No 44
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=98.25 E-value=4.1e-07 Score=80.81 Aligned_cols=84 Identities=8% Similarity=-0.041 Sum_probs=67.9
Q ss_pred EEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCC---cccccccccCCCCCcE
Q 013904 299 YVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDG---SYAKDLTILGVDLARI 374 (434)
Q Consensus 299 ~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~Lgrdl~~v 374 (434)
.....||+.++|+.+. +++.++|.|++.+..+..+++.+ . ..+|...+..++.. .++ .|.+-++++|.++ ++
T Consensus 62 ~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l-~~~f~~i~~~~~~~-~Kp~~~~~~~~~~~~~~~~-~~ 137 (154)
T TIGR01549 62 EEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-L-GDYFDLILGSDEFG-AKPEPEIFLAALESLGLPP-EV 137 (154)
T ss_pred hheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-H-HhcCcEEEecCCCC-CCcCHHHHHHHHHHcCCCC-CE
Confidence 4455799999999997 78999999999999999999996 3 34788877777665 443 5677788889888 99
Q ss_pred EEEECChhhhcc
Q 013904 375 AIIDNSPQVFRL 386 (434)
Q Consensus 375 IIIDDsp~~~~~ 386 (434)
++|.|++.-...
T Consensus 138 l~iGDs~~Di~a 149 (154)
T TIGR01549 138 LHVGDNLNDIEG 149 (154)
T ss_pred EEEeCCHHHHHH
Confidence 999999865543
No 45
>COG4996 Predicted phosphatase [General function prediction only]
Probab=98.24 E-value=5.8e-06 Score=73.89 Aligned_cols=143 Identities=15% Similarity=0.040 Sum_probs=99.5
Q ss_pred EEEEeccccccccccccCCCCCceeEEEe-cceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCC
Q 013904 263 TLVLDLDETLVHSSTEPCDDADFTFQVFF-NMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPD 340 (434)
Q Consensus 263 tLVLDLD~TLVhS~~~~~~~~d~~~~v~~-~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~ 340 (434)
.+|||+|+||-+--.-......|+.--.. -....+..|.++|++.+||+.+. .+|-+..+|.....-|-++|..||..
T Consensus 2 ~i~~d~d~t~wdhh~iSsl~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~~ 81 (164)
T COG4996 2 AIVFDADKTLWDHHNISSLEPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDLL 81 (164)
T ss_pred cEEEeCCCcccccccchhcCCcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhchh
Confidence 58999999997642211111222110000 01334678999999999999999 78999999999999999999999998
Q ss_pred CCeeeEEEecccceeeCCccccccccc------CCCCCcEEEEECChhhh---ccCCCCeeeeeeecCCCCchHHH
Q 013904 341 RMLIARRAYRESCIFSDGSYAKDLTIL------GVDLARIAIIDNSPQVF---RLQLDNGIPIKSWFDDPSDCALI 407 (434)
Q Consensus 341 ~~~F~~rl~Re~c~~~~g~y~KDL~~L------grdl~~vIIIDDsp~~~---~~qp~NgI~I~~f~~d~~D~eLl 407 (434)
. ||.+.+...|-.... +..+-|+.+ -..+.++|.+||+...+ +....|.=.++.|.+-..-.+..
T Consensus 82 ~-yFhy~ViePhP~K~~-ML~~llr~i~~er~~~ikP~~Ivy~DDR~iH~~~Iwe~~G~V~~~~~~~Di~c~~ei~ 155 (164)
T COG4996 82 Q-YFHYIVIEPHPYKFL-MLSQLLREINTERNQKIKPSEIVYLDDRRIHFGNIWEYLGNVKCLEMWKDISCYSEIF 155 (164)
T ss_pred h-hEEEEEecCCChhHH-HHHHHHHHHHHhhccccCcceEEEEecccccHHHHHHhcCCeeeeEeecchHHHHHHH
Confidence 7 999999877654221 222333333 34688999999998766 44667888888887764333333
No 46
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.18 E-value=7e-06 Score=82.46 Aligned_cols=122 Identities=18% Similarity=0.205 Sum_probs=87.2
Q ss_pred CCceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeec-chHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHH
Q 013904 259 RKRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQR-PFLRTFLERVA-EMFEIIVFTASESVYAEKLLDI 336 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lR-P~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~ 336 (434)
+.++.+||||||||+.... -|.+| |++.+.|+++. +++.++|+|++.+.++..+++.
T Consensus 126 ~~~~~i~~D~D~TL~~~~~---------------------~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~ 184 (303)
T PHA03398 126 EIPHVIVFDLDSTLITDEE---------------------PVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKE 184 (303)
T ss_pred eeccEEEEecCCCccCCCC---------------------ccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHH
Confidence 6778999999999997732 26688 99999999999 6899999999999999999999
Q ss_pred hCCCCCeeeEEEecccceeeC----------------Cccccccc-----------------ccCCC-CCcEEEEECChh
Q 013904 337 LDPDRMLIARRAYRESCIFSD----------------GSYAKDLT-----------------ILGVD-LARIAIIDNSPQ 382 (434)
Q Consensus 337 LDP~~~~F~~rl~Re~c~~~~----------------g~y~KDL~-----------------~Lgrd-l~~vIIIDDsp~ 382 (434)
++..+ +|...+..++..... ..+..|.. +.|.+ .+-+-+|||-+.
T Consensus 185 lgL~~-yFDvII~~g~i~~k~~~~~~~d~~~~~~~~~~~f~~d~~~~~~lPKSprvVl~yL~~~gvn~~KtiTLVDDl~~ 263 (303)
T PHA03398 185 TKLEG-YFDIIICGGRKAGEYSRRVIVDNKYKMVFVKKPFYLDVTDVKNLPKSPRVVLWYLRKKGVNYFKTITLVDDLKS 263 (303)
T ss_pred cCCCc-cccEEEECCCcccccccceeecccceeEEecCceeEeCCcccCCCCCCeehHHHHHHcCcceeccEEEeccCcc
Confidence 99975 787777655433211 11122222 22333 334557777775
Q ss_pred hhccCCCCeeeeeeecCCCCc
Q 013904 383 VFRLQLDNGIPIKSWFDDPSD 403 (434)
Q Consensus 383 ~~~~qp~NgI~I~~f~~d~~D 403 (434)
. ..+=+|-+.++..-.+.+|
T Consensus 264 N-n~~YD~fv~v~rcp~P~~D 283 (303)
T PHA03398 264 N-NYSYDYFVNVKRCPEPVND 283 (303)
T ss_pred c-CccceeEEEeeeCCCCcHH
Confidence 3 4455777888777666555
No 47
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.16 E-value=2.2e-06 Score=99.25 Aligned_cols=106 Identities=10% Similarity=0.072 Sum_probs=89.6
Q ss_pred ecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCC---cccccccccCCCCCcEEEE
Q 013904 302 QRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDG---SYAKDLTILGVDLARIAII 377 (434)
Q Consensus 302 lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~Lgrdl~~vIII 377 (434)
..||+.+||++|. ++|.++|.|++.+.+++.+++.++....+|...+..+++...|+ .|.+.++++|.+++++++|
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v~I 241 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILGVPTSECVVI 241 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHcCcCcccEEEE
Confidence 5899999999998 78999999999999999999999876458999998887766554 6788899999999999999
Q ss_pred ECChhhhccCCCCeeeeeeecCCCCchHHH
Q 013904 378 DNSPQVFRLQLDNGIPIKSWFDDPSDCALI 407 (434)
Q Consensus 378 DDsp~~~~~qp~NgI~I~~f~~d~~D~eLl 407 (434)
+|++.-+......|+++..........+|.
T Consensus 242 gDs~~Di~AA~~aGm~~I~v~~~~~~~~L~ 271 (1057)
T PLN02919 242 EDALAGVQAARAAGMRCIAVTTTLSEEILK 271 (1057)
T ss_pred cCCHHHHHHHHHcCCEEEEECCCCCHHHHh
Confidence 999999988888999888775443333443
No 48
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=98.16 E-value=2.3e-06 Score=90.42 Aligned_cols=95 Identities=12% Similarity=0.120 Sum_probs=76.4
Q ss_pred EeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEeccccee-eCC-cccccccccCCCCCcEEE
Q 013904 300 VRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIF-SDG-SYAKDLTILGVDLARIAI 376 (434)
Q Consensus 300 V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~-~~g-~y~KDL~~Lgrdl~~vII 376 (434)
+.++||+.++|+++. +++.++|.|++.+.++..+++.++... ||...+..++... .++ .|.+.++.++ ++++++
T Consensus 329 ~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~-~f~~i~~~d~v~~~~kP~~~~~al~~l~--~~~~v~ 405 (459)
T PRK06698 329 GALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQ-WVTETFSIEQINSLNKSDLVKSILNKYD--IKEAAV 405 (459)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHh-hcceeEecCCCCCCCCcHHHHHHHHhcC--cceEEE
Confidence 567899999999998 789999999999999999999998876 8999888765421 222 4445555554 688999
Q ss_pred EECChhhhccCCCCeeeeeee
Q 013904 377 IDNSPQVFRLQLDNGIPIKSW 397 (434)
Q Consensus 377 IDDsp~~~~~qp~NgI~I~~f 397 (434)
|.|++.-+.....+|+.+...
T Consensus 406 VGDs~~Di~aAk~AG~~~I~v 426 (459)
T PRK06698 406 VGDRLSDINAAKDNGLIAIGC 426 (459)
T ss_pred EeCCHHHHHHHHHCCCeEEEE
Confidence 999999888888888876544
No 49
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=98.15 E-value=3e-06 Score=82.71 Aligned_cols=133 Identities=9% Similarity=-0.020 Sum_probs=84.3
Q ss_pred CCceEEEEeccccccccccc--cCCC-CCce-eEEEeccee--------ceeEEeecchHHHHHHHhh-cCeEEEEEcCC
Q 013904 259 RKRVTLVLDLDETLVHSSTE--PCDD-ADFT-FQVFFNMKE--------HTVYVRQRPFLRTFLERVA-EMFEIIVFTAS 325 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~~~--~~~~-~d~~-~~v~~~~~~--------~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas 325 (434)
+++..++|||||||++|..- .+.. .... +.. +.+.. ........|++.+||+++. +++.++|.|+.
T Consensus 61 ~~p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~-l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr 139 (237)
T TIGR01672 61 RPPIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDY-LKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGR 139 (237)
T ss_pred CCCeEEEEeCCCccccCcHHHhCCcccCCHHHhhh-hcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeCC
Confidence 45669999999999999762 1111 1110 000 00111 1122344555999999998 68999999998
Q ss_pred ----chHHHHHHHHHhCCCCCeeeEEEecccceeeCCcccccccccCCCCCcEEEEECChhhhccCCCCeeeeeee
Q 013904 326 ----ESVYAEKLLDILDPDRMLIARRAYRESCIFSDGSYAKDLTILGVDLARIAIIDNSPQVFRLQLDNGIPIKSW 397 (434)
Q Consensus 326 ----~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g~y~KDL~~Lgrdl~~vIIIDDsp~~~~~qp~NgI~I~~f 397 (434)
...+++.+++.++... +|...+..+.....+.....-+.. ...++.|-|+..-+.....+|+.....
T Consensus 140 ~~~k~~~~a~~ll~~lGi~~-~f~~i~~~d~~~~~Kp~~~~~l~~----~~i~i~vGDs~~DI~aAk~AGi~~I~V 210 (237)
T TIGR01672 140 TPGKTDTVSKTLAKNFHIPA-MNPVIFAGDKPGQYQYTKTQWIQD----KNIRIHYGDSDNDITAAKEAGARGIRI 210 (237)
T ss_pred CCCcCHHHHHHHHHHhCCch-heeEEECCCCCCCCCCCHHHHHHh----CCCeEEEeCCHHHHHHHHHCCCCEEEE
Confidence 6779999999999875 776655555433222211111122 233799999999887777788875554
No 50
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.15 E-value=2.6e-06 Score=84.32 Aligned_cols=128 Identities=15% Similarity=0.121 Sum_probs=96.7
Q ss_pred CCceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHh
Q 013904 259 RKRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDIL 337 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~L 337 (434)
.++..+++|+||||........ .++. ...-....|++.++|+.+. +++.++|.|+.....++.+++.|
T Consensus 156 ~~~~~~~~D~dgtl~~~~~~~~--~~~~---------~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l 224 (300)
T PHA02530 156 GLPKAVIFDIDGTLAKMGGRSP--YDWT---------KVKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWL 224 (300)
T ss_pred CCCCEEEEECCCcCcCCCCCCc--cchh---------hcccCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHH
Confidence 4567999999999997643211 1111 0112357999999999998 67999999999999999999999
Q ss_pred CCCCCeeeEEEeccc-------ceeeCC---cccccccccCC-CCCcEEEEECChhhhccCCCCeeeeeee
Q 013904 338 DPDRMLIARRAYRES-------CIFSDG---SYAKDLTILGV-DLARIAIIDNSPQVFRLQLDNGIPIKSW 397 (434)
Q Consensus 338 DP~~~~F~~rl~Re~-------c~~~~g---~y~KDL~~Lgr-dl~~vIIIDDsp~~~~~qp~NgI~I~~f 397 (434)
+..+.+|...+..+. ....++ .+.+.|..++. +++.++.|||++........+||++...
T Consensus 225 ~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v 295 (300)
T PHA02530 225 RQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEKIAPKYDVLLAVDDRDQVVDMWRRIGLECWQV 295 (300)
T ss_pred HHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHHHhccCceEEEEEcCcHHHHHHHHHhCCeEEEe
Confidence 998767877666552 222232 34566677777 6799999999999999988999998766
No 51
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=98.06 E-value=9.6e-06 Score=74.74 Aligned_cols=121 Identities=16% Similarity=0.270 Sum_probs=79.0
Q ss_pred CceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchH----------
Q 013904 260 KRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESV---------- 328 (434)
Q Consensus 260 kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~---------- 328 (434)
.++.++||+||||+....... + ...... +..+-||+.+.|+.+. ++|.++|.|++...
T Consensus 12 ~~k~~~~D~Dgtl~~~~~~~~----~------~~~~~~-~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~ 80 (166)
T TIGR01664 12 QSKVAAFDLDGTLITTRSGKV----F------PTSASD-WRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESF 80 (166)
T ss_pred cCcEEEEeCCCceEecCCCCc----c------cCChHH-eEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHH
Confidence 456899999999997532110 0 000000 1124599999999997 78999999998763
Q ss_pred --HHHHHHHHhCCCCCeeeEEEecccceeeCC---cccccccccC--CCCCcEEEEECCh--------hhhccCCCCeee
Q 013904 329 --YAEKLLDILDPDRMLIARRAYRESCIFSDG---SYAKDLTILG--VDLARIAIIDNSP--------QVFRLQLDNGIP 393 (434)
Q Consensus 329 --YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~Lg--rdl~~vIIIDDsp--------~~~~~qp~NgI~ 393 (434)
+++.+++.++.. +...+..+.....++ .+...++++| .+++++++|.|++ .-+.....+||+
T Consensus 81 ~~~i~~~l~~~gl~---~~~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~ 157 (166)
T TIGR01664 81 KNKIEAFLEKLKVP---IQVLAATHAGLYRKPMTGMWEYLQSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLE 157 (166)
T ss_pred HHHHHHHHHHcCCC---EEEEEecCCCCCCCCccHHHHHHHHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCC
Confidence 577888888874 223333333222232 4556667778 8999999999996 244455567776
Q ss_pred e
Q 013904 394 I 394 (434)
Q Consensus 394 I 394 (434)
.
T Consensus 158 ~ 158 (166)
T TIGR01664 158 F 158 (166)
T ss_pred c
Confidence 5
No 52
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=98.02 E-value=1.8e-05 Score=73.71 Aligned_cols=121 Identities=17% Similarity=0.164 Sum_probs=67.6
Q ss_pred ceEEEEeccccccccccccCCCCCceeEEEe--cceeceeEEeecchHHHHHHHhh-cCeEEEEEcC-CchHHHHHHHHH
Q 013904 261 RVTLVLDLDETLVHSSTEPCDDADFTFQVFF--NMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTA-SESVYAEKLLDI 336 (434)
Q Consensus 261 K~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~--~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Ta-s~~~YA~~Il~~ 336 (434)
++++|||||.||-.........+.+.....- -....+.-+.+-|++.+.|+.+. ++.+|++.|. ..+..|.++|+.
T Consensus 3 PklvvFDLD~TlW~~~~~~~~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~ 82 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDTHVGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKL 82 (169)
T ss_dssp -SEEEE-STTTSSSS-TTTSS-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHH
T ss_pred CcEEEEcCcCCCCchhHhhccCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHh
Confidence 5689999999997664332222221110000 00235667889999999999999 7899999995 468899999999
Q ss_pred hCCC----------CCeeeEEEecccceeeCCccccccc-ccCCCCCcEEEEECChhhhc
Q 013904 337 LDPD----------RMLIARRAYRESCIFSDGSYAKDLT-ILGVDLARIAIIDNSPQVFR 385 (434)
Q Consensus 337 LDP~----------~~~F~~rl~Re~c~~~~g~y~KDL~-~Lgrdl~~vIIIDDsp~~~~ 385 (434)
|+.. . +|.+.-.-.. .+..+.+.|. ..|.+.+.++++||......
T Consensus 83 l~i~~~~~~~~~~~~-~F~~~eI~~g---sK~~Hf~~i~~~tgI~y~eMlFFDDe~~N~~ 138 (169)
T PF12689_consen 83 LEIDDADGDGVPLIE-YFDYLEIYPG---SKTTHFRRIHRKTGIPYEEMLFFDDESRNIE 138 (169)
T ss_dssp TT-C----------C-CECEEEESSS----HHHHHHHHHHHH---GGGEEEEES-HHHHH
T ss_pred cCCCccccccccchh-hcchhheecC---chHHHHHHHHHhcCCChhHEEEecCchhcce
Confidence 9887 3 5554333222 2223333333 56999999999999987663
No 53
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=98.02 E-value=1e-05 Score=81.75 Aligned_cols=111 Identities=18% Similarity=0.133 Sum_probs=79.3
Q ss_pred CceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHH--
Q 013904 260 KRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDI-- 336 (434)
Q Consensus 260 kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~-- 336 (434)
.+++||+|||+||..-.... +-. ..-......|++.++|+.++ +++.+.|.|...+..|..+++.
T Consensus 2 ~~k~~v~DlDnTlw~gv~~e----~g~--------~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~ 69 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLGE----DGI--------DNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRK 69 (320)
T ss_pred CeEEEEEcCCCCCCCCEEcc----CCc--------cccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCc
Confidence 47899999999998543210 000 00011224789999999999 7899999999999999999998
Q ss_pred --hCCCCCeeeEEEecccceeeCC-cccccccccCCCCCcEEEEECChhhhcc
Q 013904 337 --LDPDRMLIARRAYRESCIFSDG-SYAKDLTILGVDLARIAIIDNSPQVFRL 386 (434)
Q Consensus 337 --LDP~~~~F~~rl~Re~c~~~~g-~y~KDL~~Lgrdl~~vIIIDDsp~~~~~ 386 (434)
+.... +|...... ...+. .+.+-++.+|.+++.+|+|||++.-...
T Consensus 70 ~~~~~~~-~f~~~~~~---~~pk~~~i~~~~~~l~i~~~~~vfidD~~~d~~~ 118 (320)
T TIGR01686 70 DFILQAE-DFDARSIN---WGPKSESLRKIAKKLNLGTDSFLFIDDNPAERAN 118 (320)
T ss_pred cccCcHH-HeeEEEEe---cCchHHHHHHHHHHhCCCcCcEEEECCCHHHHHH
Confidence 66654 66655332 11222 4556667789999999999999986644
No 54
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=98.00 E-value=5.7e-06 Score=78.92 Aligned_cols=97 Identities=14% Similarity=0.108 Sum_probs=80.0
Q ss_pred EeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCC---cccccccccCCCCCcEE
Q 013904 300 VRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDG---SYAKDLTILGVDLARIA 375 (434)
Q Consensus 300 V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~Lgrdl~~vI 375 (434)
...-||+.+.|..++ ++|.+.|.|+.....++.+++.++... ||..++..+.....|+ ....-+..+|.++++++
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~-~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~l 166 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLAD-YFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEAL 166 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCcc-ccceEEcCCCCCCCCcCHHHHHHHHHHhCCChhheE
Confidence 467899999999999 789999999999999999999999986 8988887444444443 34566677888878999
Q ss_pred EEECChhhhccCCCCeeeeeee
Q 013904 376 IIDNSPQVFRLQLDNGIPIKSW 397 (434)
Q Consensus 376 IIDDsp~~~~~qp~NgI~I~~f 397 (434)
+|=|+..-......+|++...+
T Consensus 167 ~VGDs~~Di~aA~~Ag~~~v~v 188 (220)
T COG0546 167 MVGDSLNDILAAKAAGVPAVGV 188 (220)
T ss_pred EECCCHHHHHHHHHcCCCEEEE
Confidence 9999999888877788775544
No 55
>PRK06769 hypothetical protein; Validated
Probab=98.00 E-value=8.9e-06 Score=75.12 Aligned_cols=121 Identities=13% Similarity=0.108 Sum_probs=79.7
Q ss_pred CceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHH-----HHHH
Q 013904 260 KRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVY-----AEKL 333 (434)
Q Consensus 260 kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~Y-----A~~I 333 (434)
+-+.|+||+||||.--. + -.+.-.+.+.||+.++|++|+ ++|.++|.|++.... ....
T Consensus 3 ~~~~~~~d~d~~~~~~~--------~--------~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~ 66 (173)
T PRK06769 3 NIQAIFIDRDGTIGGDT--------T--------IHYPGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADF 66 (173)
T ss_pred CCcEEEEeCCCcccCCC--------C--------CCCHHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHH
Confidence 34689999999994110 0 001113457899999999998 689999999986421 1122
Q ss_pred HHHhCCCCCeeeEEEe-----cccceeeCC---cccccccccCCCCCcEEEEECChhhhccCCCCeeeeeeec
Q 013904 334 LDILDPDRMLIARRAY-----RESCIFSDG---SYAKDLTILGVDLARIAIIDNSPQVFRLQLDNGIPIKSWF 398 (434)
Q Consensus 334 l~~LDP~~~~F~~rl~-----Re~c~~~~g---~y~KDL~~Lgrdl~~vIIIDDsp~~~~~qp~NgI~I~~f~ 398 (434)
...+...+ |...+. .+.....++ .|.+.+++++.+++++++|+|++.-.......|+......
T Consensus 67 ~~~l~~~g--~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~i~IGD~~~Di~aA~~aGi~~i~v~ 137 (173)
T PRK06769 67 VQELKGFG--FDDIYLCPHKHGDGCECRKPSTGMLLQAAEKHGLDLTQCAVIGDRWTDIVAAAKVNATTILVR 137 (173)
T ss_pred HHHHHhCC--cCEEEECcCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHCCCeEEEEe
Confidence 23333222 223232 222223333 6778888899999999999999988887778888877654
No 56
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=97.94 E-value=1e-05 Score=71.32 Aligned_cols=97 Identities=19% Similarity=0.276 Sum_probs=83.7
Q ss_pred eEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCC---cccccccccCCCCCc
Q 013904 298 VYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDG---SYAKDLTILGVDLAR 373 (434)
Q Consensus 298 ~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~Lgrdl~~ 373 (434)
......|++.++|+.++ +++.++|.|.+.+.++..+++.++.. .+|...++.++....++ .|.+-++.+|.++++
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~-~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~ 152 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLD-DYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEE 152 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG-GGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGG
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccc-cccccccccchhhhhhhHHHHHHHHHHHcCCCcce
Confidence 56789999999999999 89999999999999999999999887 48999988877665554 677788888999999
Q ss_pred EEEEECChhhhccCCCCeeeee
Q 013904 374 IAIIDNSPQVFRLQLDNGIPIK 395 (434)
Q Consensus 374 vIIIDDsp~~~~~qp~NgI~I~ 395 (434)
+++|||++.........|++..
T Consensus 153 ~~~vgD~~~d~~~A~~~G~~~i 174 (176)
T PF13419_consen 153 ILFVGDSPSDVEAAKEAGIKTI 174 (176)
T ss_dssp EEEEESSHHHHHHHHHTTSEEE
T ss_pred EEEEeCCHHHHHHHHHcCCeEE
Confidence 9999999988877767777643
No 57
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=97.94 E-value=1.2e-05 Score=75.48 Aligned_cols=100 Identities=15% Similarity=0.115 Sum_probs=84.0
Q ss_pred EEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCC---cccccccccCCCCCcE
Q 013904 299 YVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDG---SYAKDLTILGVDLARI 374 (434)
Q Consensus 299 ~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~Lgrdl~~v 374 (434)
++.+.||+.+||+++. +++.++|.|++...++...++.++... ||...+..+.....++ .|.+.++++|.+++++
T Consensus 92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~-~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~ 170 (221)
T TIGR02253 92 YLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRD-FFDAVITSEEEGVEKPHPKIFYAALKRLGVKPEEA 170 (221)
T ss_pred hCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHH-hccEEEEeccCCCCCCCHHHHHHHHHHcCCChhhE
Confidence 4578999999999998 569999999999999999999998875 8999888877665554 6788899999999999
Q ss_pred EEEECCh-hhhccCCCCeeeeeeecC
Q 013904 375 AIIDNSP-QVFRLQLDNGIPIKSWFD 399 (434)
Q Consensus 375 IIIDDsp-~~~~~qp~NgI~I~~f~~ 399 (434)
|+|+|++ .-+......|+...-+..
T Consensus 171 ~~igDs~~~di~~A~~aG~~~i~~~~ 196 (221)
T TIGR02253 171 VMVGDRLDKDIKGAKNLGMKTVWINQ 196 (221)
T ss_pred EEECCChHHHHHHHHHCCCEEEEECC
Confidence 9999998 567777778887765543
No 58
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=97.90 E-value=1.5e-05 Score=71.94 Aligned_cols=94 Identities=17% Similarity=0.176 Sum_probs=77.8
Q ss_pred EeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCC---cccccccccCCCCCcEE
Q 013904 300 VRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDG---SYAKDLTILGVDLARIA 375 (434)
Q Consensus 300 V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~Lgrdl~~vI 375 (434)
+.++||+.+||+.++ +++.++|.|++...+ ..++..++..+ +|...++.++....++ .|.+-++++|.++++++
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~-~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~ 161 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRD-LFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECL 161 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHH-HCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEE
Confidence 578899999999998 589999999999998 77776677765 7999888766655553 56777888999999999
Q ss_pred EEECChhhhccCCCCeeeee
Q 013904 376 IIDNSPQVFRLQLDNGIPIK 395 (434)
Q Consensus 376 IIDDsp~~~~~qp~NgI~I~ 395 (434)
+|+|++.........|+...
T Consensus 162 ~vgD~~~di~aA~~~G~~~i 181 (183)
T TIGR01509 162 FVDDSPAGIEAAKAAGMHTV 181 (183)
T ss_pred EEcCCHHHHHHHHHcCCEEE
Confidence 99999988877777777643
No 59
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=97.85 E-value=4.4e-05 Score=72.53 Aligned_cols=123 Identities=14% Similarity=0.075 Sum_probs=81.3
Q ss_pred EEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCC-CCeeeEEE--ecccceeeCC-------------ccc
Q 013904 299 YVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPD-RMLIARRA--YRESCIFSDG-------------SYA 361 (434)
Q Consensus 299 ~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~-~~~F~~rl--~Re~c~~~~g-------------~y~ 361 (434)
.+.++||+.+||+.+. +.+.++|.|++.+.+++.+++.+ .. ..++.... ..+.....++ .+.
T Consensus 72 ~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~ 150 (219)
T PRK09552 72 TAEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCKP 150 (219)
T ss_pred CCCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCCCchH
Confidence 4678999999999998 67999999999999999999987 32 22443222 1222111111 123
Q ss_pred ccccccCCCCCcEEEEECChhhhccCCCCeeeeeeecCCCCchHHHhHHHHHHhc-------cCCCChHHHHHHhhCC
Q 013904 362 KDLTILGVDLARIAIIDNSPQVFRLQLDNGIPIKSWFDDPSDCALISLLPFLETL-------AAADDVRPIIAEKFSI 432 (434)
Q Consensus 362 KDL~~Lgrdl~~vIIIDDsp~~~~~qp~NgI~I~~f~~d~~D~eLl~Ll~~Le~L-------~~~~DVR~~L~k~f~~ 432 (434)
+.++.++.+..++|.|.|+..-......+|+.+.. + .|..+++.. ....||..+|++.|..
T Consensus 151 ~~l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~~~a~------~----~l~~~~~~~~~~~~~~~~f~ei~~~l~~~~~~ 218 (219)
T PRK09552 151 SLIRKLSDTNDFHIVIGDSITDLEAAKQADKVFAR------D----FLITKCEELGIPYTPFETFHDVQTELKHLLEV 218 (219)
T ss_pred HHHHHhccCCCCEEEEeCCHHHHHHHHHCCcceeH------H----HHHHHHHHcCCCccccCCHHHHHHHHHHHhcc
Confidence 45566677888999999999988777777885441 1 233344332 1235666667766654
No 60
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=97.82 E-value=1.9e-05 Score=73.78 Aligned_cols=102 Identities=13% Similarity=0.129 Sum_probs=82.9
Q ss_pred EEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCC---cccccccccCCCCCcE
Q 013904 299 YVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDG---SYAKDLTILGVDLARI 374 (434)
Q Consensus 299 ~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~Lgrdl~~v 374 (434)
+..++||+.++|+.++ ++|.++|.|++.+..+..++.....-..+|...++.+++...|+ .|.+.++++|.+++++
T Consensus 82 ~~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~~ 161 (199)
T PRK09456 82 FVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEGFSAADA 161 (199)
T ss_pred HhccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcCCChhHe
Confidence 3467999999999998 67999999999988777665543222347888888877776654 6788899999999999
Q ss_pred EEEECChhhhccCCCCeeeeeeecCC
Q 013904 375 AIIDNSPQVFRLQLDNGIPIKSWFDD 400 (434)
Q Consensus 375 IIIDDsp~~~~~qp~NgI~I~~f~~d 400 (434)
++|||++.........|+...-+.+.
T Consensus 162 l~vgD~~~di~aA~~aG~~~i~~~~~ 187 (199)
T PRK09456 162 VFFDDNADNIEAANALGITSILVTDK 187 (199)
T ss_pred EEeCCCHHHHHHHHHcCCEEEEecCC
Confidence 99999999988888899998776654
No 61
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=97.78 E-value=2.6e-05 Score=72.33 Aligned_cols=96 Identities=13% Similarity=0.128 Sum_probs=81.5
Q ss_pred EeecchHHHHHHHhhc-CeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCC---cccccccccCCCCCcEE
Q 013904 300 VRQRPFLRTFLERVAE-MFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDG---SYAKDLTILGVDLARIA 375 (434)
Q Consensus 300 V~lRP~l~eFL~~lsk-~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~Lgrdl~~vI 375 (434)
+...|++.++|+++++ +|.++|.|++...++..+++.++... +|...+..++....|+ .|.+-++.+|.++++++
T Consensus 91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~-~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~ 169 (198)
T TIGR01428 91 LPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDD-PFDAVLSADAVRAYKPAPQVYQLALEALGVPPDEVL 169 (198)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChh-hhheeEehhhcCCCCCCHHHHHHHHHHhCCChhhEE
Confidence 5578999999999995 69999999999999999999998654 8999888777655554 56788888999999999
Q ss_pred EEECChhhhccCCCCeeeeee
Q 013904 376 IIDNSPQVFRLQLDNGIPIKS 396 (434)
Q Consensus 376 IIDDsp~~~~~qp~NgI~I~~ 396 (434)
+|+|++.-+.....+|+...-
T Consensus 170 ~vgD~~~Di~~A~~~G~~~i~ 190 (198)
T TIGR01428 170 FVASNPWDLGGAKKFGFKTAW 190 (198)
T ss_pred EEeCCHHHHHHHHHCCCcEEE
Confidence 999999888777788887653
No 62
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.76 E-value=4.6e-05 Score=70.21 Aligned_cols=112 Identities=16% Similarity=0.131 Sum_probs=81.7
Q ss_pred CCceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCc-hHHHHHHHHH
Q 013904 259 RKRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASE-SVYAEKLLDI 336 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~-~~YA~~Il~~ 336 (434)
..-..+|+|+||||..... ....|++.++|++|. +++.++|.|++. ...+..+++.
T Consensus 23 ~~v~~vv~D~Dgtl~~~~~----------------------~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~ 80 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYPDH----------------------NEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKA 80 (170)
T ss_pred CCCCEEEEecCCccccCCC----------------------CCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHH
Confidence 3557899999999985421 235799999999998 569999999998 6888888887
Q ss_pred hCCCCCeeeEEEecccceeeCCcccccccccCCCCCcEEEEECCh-hhhccCCCCeeeeeeecC
Q 013904 337 LDPDRMLIARRAYRESCIFSDGSYAKDLTILGVDLARIAIIDNSP-QVFRLQLDNGIPIKSWFD 399 (434)
Q Consensus 337 LDP~~~~F~~rl~Re~c~~~~g~y~KDL~~Lgrdl~~vIIIDDsp-~~~~~qp~NgI~I~~f~~ 399 (434)
++... + + .........+.+-++.++.+++++++|+|+. .-......+|+...-+..
T Consensus 81 ~gl~~-~-----~-~~~KP~p~~~~~~l~~~~~~~~~~l~IGDs~~~Di~aA~~aGi~~i~v~~ 137 (170)
T TIGR01668 81 LGIPV-L-----P-HAVKPPGCAFRRAHPEMGLTSEQVAVVGDRLFTDVMGGNRNGSYTILVEP 137 (170)
T ss_pred cCCEE-E-----c-CCCCCChHHHHHHHHHcCCCHHHEEEECCcchHHHHHHHHcCCeEEEEcc
Confidence 76431 1 1 1111111256677788899999999999998 466666678887766543
No 63
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=97.76 E-value=0.00016 Score=74.69 Aligned_cols=123 Identities=14% Similarity=0.147 Sum_probs=87.4
Q ss_pred CceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCC-------------
Q 013904 260 KRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTAS------------- 325 (434)
Q Consensus 260 kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas------------- 325 (434)
+++.|+||-||||+........ ......+.+.|++.++|++|. +.|.++|.|+.
T Consensus 1 ~~k~l~lDrDgtl~~~~~~~y~------------~~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l 68 (354)
T PRK05446 1 MQKILFIDRDGTLIEEPPTDFQ------------VDSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDF 68 (354)
T ss_pred CCcEEEEeCCCCccCCCCcccc------------ccCcccceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHH
Confidence 4679999999999987421100 122234788999999999998 57999999995
Q ss_pred --chHHHHHHHHHhCCCCCeeeEEEec-----ccceeeCC---cccccccccCCCCCcEEEEECChhhhccCCCCeeeee
Q 013904 326 --ESVYAEKLLDILDPDRMLIARRAYR-----ESCIFSDG---SYAKDLTILGVDLARIAIIDNSPQVFRLQLDNGIPIK 395 (434)
Q Consensus 326 --~~~YA~~Il~~LDP~~~~F~~rl~R-----e~c~~~~g---~y~KDL~~Lgrdl~~vIIIDDsp~~~~~qp~NgI~I~ 395 (434)
...++..+++.++. +|...++. +.|...++ .+..-++.++.+++++++|-|+..-+.....+|+...
T Consensus 69 ~~~~~~i~~iL~~~gl---~fd~i~i~~~~~sd~~~~rKP~p~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~~I 145 (354)
T PRK05446 69 DPPHNLMMQIFESQGI---KFDEVLICPHFPEDNCSCRKPKTGLVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIKGI 145 (354)
T ss_pred hhHHHHHHHHHHHcCC---ceeeEEEeCCcCcccCCCCCCCHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCeEE
Confidence 24566666776655 36655554 44444443 3344456678899999999999988877778888876
Q ss_pred ee
Q 013904 396 SW 397 (434)
Q Consensus 396 ~f 397 (434)
-.
T Consensus 146 ~v 147 (354)
T PRK05446 146 RY 147 (354)
T ss_pred EE
Confidence 44
No 64
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=97.74 E-value=3.2e-05 Score=72.37 Aligned_cols=97 Identities=11% Similarity=0.037 Sum_probs=82.2
Q ss_pred EeecchHHHHHHHhhcCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCC---ccccccccc-CCCCCcEE
Q 013904 300 VRQRPFLRTFLERVAEMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDG---SYAKDLTIL-GVDLARIA 375 (434)
Q Consensus 300 V~lRP~l~eFL~~lsk~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~L-grdl~~vI 375 (434)
+.++||+.++|+++++.+.++|.|++...+++.+++.++..+ +|+..+..+.....++ .|.+.++++ |.+++++|
T Consensus 96 ~~~~~g~~~~L~~l~~~~~~~i~Sn~~~~~~~~~l~~~~l~~-~fd~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v 174 (224)
T TIGR02254 96 HQLLPGAFELMENLQQKFRLYIVTNGVRETQYKRLRKSGLFP-FFDDIFVSEDAGIQKPDKEIFNYALERMPKFSKEEVL 174 (224)
T ss_pred CeeCccHHHHHHHHHhcCcEEEEeCCchHHHHHHHHHCCcHh-hcCEEEEcCccCCCCCCHHHHHHHHHHhcCCCchheE
Confidence 578999999999999669999999999999999999998876 8998888777665554 677888999 99999999
Q ss_pred EEECCh-hhhccCCCCeeeeeee
Q 013904 376 IIDNSP-QVFRLQLDNGIPIKSW 397 (434)
Q Consensus 376 IIDDsp-~~~~~qp~NgI~I~~f 397 (434)
+|+|++ .-+.....+|++..-+
T Consensus 175 ~igD~~~~di~~A~~~G~~~i~~ 197 (224)
T TIGR02254 175 MIGDSLTADIKGGQNAGLDTCWM 197 (224)
T ss_pred EECCCcHHHHHHHHHCCCcEEEE
Confidence 999997 5676666788776544
No 65
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=97.68 E-value=0.00015 Score=70.99 Aligned_cols=133 Identities=11% Similarity=0.056 Sum_probs=81.8
Q ss_pred CCceEEEEeccccccccccccCCC-CCce--eEEEecc--------eeceeEEeecchHHHHHHHhh-cCeEEEEEcCC-
Q 013904 259 RKRVTLVLDLDETLVHSSTEPCDD-ADFT--FQVFFNM--------KEHTVYVRQRPFLRTFLERVA-EMFEIIVFTAS- 325 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~~~~~~~-~d~~--~~v~~~~--------~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas- 325 (434)
.++..++||+|||+++++.-.... ..|. ..-++.. .....+....||+.+||+++. ++++|++.|+.
T Consensus 61 ~~p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~ 140 (237)
T PRK11009 61 RPPMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRT 140 (237)
T ss_pred CCCcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 456799999999999975321110 0000 0000000 111334556677999999995 88999999994
Q ss_pred ---chHHHHHHHHHhCCC-CCeeeEEEecccceeeCCcccccccccCCCCCcEEEEECChhhhccCCCCeeeeeee
Q 013904 326 ---ESVYAEKLLDILDPD-RMLIARRAYRESCIFSDGSYAKDLTILGVDLARIAIIDNSPQVFRLQLDNGIPIKSW 397 (434)
Q Consensus 326 ---~~~YA~~Il~~LDP~-~~~F~~rl~Re~c~~~~g~y~KDL~~Lgrdl~~vIIIDDsp~~~~~qp~NgI~I~~f 397 (434)
...+++.+++.++.. ..+|...+..+.. .+.....-+..++ -+|+|.|+..-+.....+|+.....
T Consensus 141 ~~k~~~t~~~Llk~~gip~~~~f~vil~gd~~--~K~~K~~~l~~~~----i~I~IGDs~~Di~aA~~AGi~~I~v 210 (237)
T PRK11009 141 ATKTETVSKTLADDFHIPADNMNPVIFAGDKP--GQYTKTQWLKKKN----IRIFYGDSDNDITAAREAGARGIRI 210 (237)
T ss_pred CcccHHHHHHHHHHcCCCcccceeEEEcCCCC--CCCCHHHHHHhcC----CeEEEcCCHHHHHHHHHcCCcEEEE
Confidence 567999999888762 3477655555432 1211112222223 3899999998887777788776543
No 66
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=97.67 E-value=3.8e-05 Score=69.76 Aligned_cols=90 Identities=12% Similarity=0.161 Sum_probs=63.9
Q ss_pred EeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCC-----------------ccc
Q 013904 300 VRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDG-----------------SYA 361 (434)
Q Consensus 300 V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g-----------------~y~ 361 (434)
+.++|++.++|+.+. +.+.++|.|++...+++.+++.++... +|...+..+......| ...
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 149 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKD-VFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGCC 149 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChh-heeEEeccCceECCCCcEEEecCCCCccCcCCCCCC
Confidence 678999999999998 579999999999999999999988654 7877765333221111 111
Q ss_pred c--cccccCCC-CCcEEEEECChhhhccCCCC
Q 013904 362 K--DLTILGVD-LARIAIIDNSPQVFRLQLDN 390 (434)
Q Consensus 362 K--DL~~Lgrd-l~~vIIIDDsp~~~~~qp~N 390 (434)
| -+..+... ++++|+|+|+..-+.....+
T Consensus 150 K~~~~~~~~~~~~~~~i~iGD~~~D~~aa~~~ 181 (188)
T TIGR01489 150 KGKVIHKLSEPKYQHIIYIGDGVTDVCPAKLS 181 (188)
T ss_pred HHHHHHHHHhhcCceEEEECCCcchhchHhcC
Confidence 2 22233333 78899999998877655444
No 67
>PRK09449 dUMP phosphatase; Provisional
Probab=97.66 E-value=4.9e-05 Score=71.69 Aligned_cols=97 Identities=10% Similarity=0.055 Sum_probs=80.5
Q ss_pred EeecchHHHHHHHhhcCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCC---cccccccccCCC-CCcEE
Q 013904 300 VRQRPFLRTFLERVAEMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDG---SYAKDLTILGVD-LARIA 375 (434)
Q Consensus 300 V~lRP~l~eFL~~lsk~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~Lgrd-l~~vI 375 (434)
+...||+.++|+.+.+.|.++|.|++.+.+++..++.++..+ +|...+..+++...|+ .|.+.++++|.. .++++
T Consensus 94 ~~~~~g~~~~L~~L~~~~~~~i~Tn~~~~~~~~~l~~~~l~~-~fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~ 172 (224)
T PRK09449 94 CTPLPGAVELLNALRGKVKMGIITNGFTELQQVRLERTGLRD-YFDLLVISEQVGVAKPDVAIFDYALEQMGNPDRSRVL 172 (224)
T ss_pred CccCccHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHhCChHH-HcCEEEEECccCCCCCCHHHHHHHHHHcCCCCcccEE
Confidence 567899999999999889999999999999999999988876 8999988887765554 677888899864 57899
Q ss_pred EEECCh-hhhccCCCCeeeeeee
Q 013904 376 IIDNSP-QVFRLQLDNGIPIKSW 397 (434)
Q Consensus 376 IIDDsp-~~~~~qp~NgI~I~~f 397 (434)
+|+|++ .-......+|+...-+
T Consensus 173 ~vgD~~~~Di~~A~~aG~~~i~~ 195 (224)
T PRK09449 173 MVGDNLHSDILGGINAGIDTCWL 195 (224)
T ss_pred EEcCCcHHHHHHHHHCCCcEEEE
Confidence 999997 4666666778765443
No 68
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=97.64 E-value=2.8e-05 Score=75.41 Aligned_cols=104 Identities=13% Similarity=0.066 Sum_probs=85.6
Q ss_pred eeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEe--cccceeeCC---cccccccccCCC
Q 013904 297 TVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAY--RESCIFSDG---SYAKDLTILGVD 370 (434)
Q Consensus 297 ~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~--Re~c~~~~g---~y~KDL~~Lgrd 370 (434)
...++.-||+.++++.|. ..-.+.++|++.+..++..+..+.-.-..|++.+. -..+...++ .|.+.+++||..
T Consensus 88 ~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~~~ 167 (222)
T KOG2914|consen 88 FMNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAAKRLGVP 167 (222)
T ss_pred ccccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCeecCCccccCCCCCchHHHHHHHhcCCC
Confidence 456788999999999999 77999999999999999988887632336888777 344444443 789999999998
Q ss_pred C-CcEEEEECChhhhccCCCCeeeeeeecCC
Q 013904 371 L-ARIAIIDNSPQVFRLQLDNGIPIKSWFDD 400 (434)
Q Consensus 371 l-~~vIIIDDsp~~~~~qp~NgI~I~~f~~d 400 (434)
+ +++++++|++...+.....|.++...-+.
T Consensus 168 ~~~k~lVfeds~~Gv~aa~aagm~vi~v~~~ 198 (222)
T KOG2914|consen 168 PPSKCLVFEDSPVGVQAAKAAGMQVVGVATP 198 (222)
T ss_pred CccceEEECCCHHHHHHHHhcCCeEEEecCC
Confidence 8 99999999999999888889888877663
No 69
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=97.61 E-value=4.2e-05 Score=73.73 Aligned_cols=91 Identities=20% Similarity=0.281 Sum_probs=73.9
Q ss_pred EeecchHHHHHHHhhcCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccc---------eeeCCcccccccccCCC
Q 013904 300 VRQRPFLRTFLERVAEMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESC---------IFSDGSYAKDLTILGVD 370 (434)
Q Consensus 300 V~lRP~l~eFL~~lsk~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c---------~~~~g~y~KDL~~Lgrd 370 (434)
++.-|-|++||-.|.+.+ ..|||.+.+..|..+|+.|+... .|...++.+-- .-....|.+..+..|.+
T Consensus 99 LkPD~~LRnlLL~l~~r~-k~~FTNa~k~HA~r~Lk~LGieD-cFegii~~e~~np~~~~~vcKP~~~afE~a~k~agi~ 176 (244)
T KOG3109|consen 99 LKPDPVLRNLLLSLKKRR-KWIFTNAYKVHAIRILKKLGIED-CFEGIICFETLNPIEKTVVCKPSEEAFEKAMKVAGID 176 (244)
T ss_pred cCCCHHHHHHHHhCcccc-EEEecCCcHHHHHHHHHHhChHH-hccceeEeeccCCCCCceeecCCHHHHHHHHHHhCCC
Confidence 677788999999999776 89999999999999999999987 78988884321 11223677888888887
Q ss_pred -CCcEEEEECChhhhccCCCCee
Q 013904 371 -LARIAIIDNSPQVFRLQLDNGI 392 (434)
Q Consensus 371 -l~~vIIIDDsp~~~~~qp~NgI 392 (434)
+.|++++||+....+....=|+
T Consensus 177 ~p~~t~FfDDS~~NI~~ak~vGl 199 (244)
T KOG3109|consen 177 SPRNTYFFDDSERNIQTAKEVGL 199 (244)
T ss_pred CcCceEEEcCchhhHHHHHhccc
Confidence 9999999999998877665443
No 70
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=97.58 E-value=2e-05 Score=73.23 Aligned_cols=95 Identities=15% Similarity=0.123 Sum_probs=65.3
Q ss_pred EEeecchHHHHHHHhhcCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEec-cccee-----eCC-cccccccccCCCC
Q 013904 299 YVRQRPFLRTFLERVAEMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYR-ESCIF-----SDG-SYAKDLTILGVDL 371 (434)
Q Consensus 299 ~V~lRP~l~eFL~~lsk~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~R-e~c~~-----~~g-~y~KDL~~Lgrdl 371 (434)
.+.++||+.+||+.+++.+.++|.|++.+.+++.+++.++... +|...+.- +.... ..+ ....-++.++...
T Consensus 66 ~~~~~pg~~e~L~~L~~~~~~~IvS~~~~~~~~~~l~~~gl~~-~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~~ 144 (205)
T PRK13582 66 TLDPLPGAVEFLDWLRERFQVVILSDTFYEFAGPLMRQLGWPT-LFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSLG 144 (205)
T ss_pred hCCCCCCHHHHHHHHHhcCCEEEEeCCcHHHHHHHHHHcCCch-hhcceEEECCCCeEECccccccchHHHHHHHHHHhC
Confidence 4567899999999999559999999999999999999998764 67655432 11110 011 1112233344555
Q ss_pred CcEEEEECChhhhccCCCCeeee
Q 013904 372 ARIAIIDNSPQVFRLQLDNGIPI 394 (434)
Q Consensus 372 ~~vIIIDDsp~~~~~qp~NgI~I 394 (434)
.+++.|.|+..-......+++.|
T Consensus 145 ~~~v~iGDs~~D~~~~~aa~~~v 167 (205)
T PRK13582 145 YRVIAAGDSYNDTTMLGEADAGI 167 (205)
T ss_pred CeEEEEeCCHHHHHHHHhCCCCE
Confidence 78999999998765554555555
No 71
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.58 E-value=0.00039 Score=69.49 Aligned_cols=71 Identities=17% Similarity=0.215 Sum_probs=59.3
Q ss_pred CCceEEEEeccccccccccccCCCCCceeEEEecceeceeEEee-cchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHH
Q 013904 259 RKRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQ-RPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDI 336 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~l-RP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~ 336 (434)
+++-++|||||.|||..... +++ -|.+.+.|.+++ .+.-+++||.|.+++|...++.
T Consensus 120 ~~phVIVfDlD~TLItd~~~---------------------v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~ 178 (297)
T PF05152_consen 120 EPPHVIVFDLDSTLITDEGD---------------------VRIRDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKE 178 (297)
T ss_pred CCCcEEEEECCCcccccCCc---------------------cccCChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHH
Confidence 56679999999999977432 222 488899999999 5568999999999999999999
Q ss_pred hCCCCCeeeEEEecc
Q 013904 337 LDPDRMLIARRAYRE 351 (434)
Q Consensus 337 LDP~~~~F~~rl~Re 351 (434)
++..+ +|...|.+.
T Consensus 179 ~~L~~-~Fd~ii~~G 192 (297)
T PF05152_consen 179 LKLEG-YFDIIICGG 192 (297)
T ss_pred hCCcc-ccEEEEeCC
Confidence 99885 899999854
No 72
>PLN02954 phosphoserine phosphatase
Probab=97.58 E-value=6.5e-05 Score=70.87 Aligned_cols=93 Identities=9% Similarity=0.084 Sum_probs=63.9
Q ss_pred EeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCC-CeeeEEEeccc-------------ce-eeCCcc-cc
Q 013904 300 VRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDR-MLIARRAYRES-------------CI-FSDGSY-AK 362 (434)
Q Consensus 300 V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~-~~F~~rl~Re~-------------c~-~~~g~y-~K 362 (434)
..++||+.++|+.+. +++.++|.|++.+.+++.+++.++... .+|...+.-+. |. ..+... .+
T Consensus 83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~~ 162 (224)
T PLN02954 83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQH 162 (224)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHHH
Confidence 457899999999998 679999999999999999999988753 46765443211 10 001111 11
Q ss_pred cccccCCCCCcEEEEECChhhhccCCCCeeee
Q 013904 363 DLTILGVDLARIAIIDNSPQVFRLQLDNGIPI 394 (434)
Q Consensus 363 DL~~Lgrdl~~vIIIDDsp~~~~~qp~NgI~I 394 (434)
-+..+| .+++|+|-|+..-+.....+|+.+
T Consensus 163 ~~~~~~--~~~~i~iGDs~~Di~aa~~~~~~~ 192 (224)
T PLN02954 163 IKKKHG--YKTMVMIGDGATDLEARKPGGADL 192 (224)
T ss_pred HHHHcC--CCceEEEeCCHHHHHhhhcCCCCE
Confidence 112233 468999999999887765555554
No 73
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=97.47 E-value=0.00016 Score=65.47 Aligned_cols=112 Identities=16% Similarity=0.140 Sum_probs=77.7
Q ss_pred eEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCC
Q 013904 262 VTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPD 340 (434)
Q Consensus 262 ~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~ 340 (434)
+.++||+||||+.-..... ......-++.++|+. -|++++ +++.++|.|+..+..+..+++.++..
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~-----------~~~~~~~~~~~~~~~--~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~ 68 (154)
T TIGR01670 2 RLLILDVDGVLTDGKIYYT-----------NNGEEIKAFNVRDGY--GIRCALKSGIEVAIITGRKAKLVEDRCKTLGIT 68 (154)
T ss_pred eEEEEeCceeEEcCeEEEC-----------CCCcEEEEEechhHH--HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCC
Confidence 5789999999995311000 001112234567765 688888 68999999999999999999999876
Q ss_pred CCeeeEEEecccceeeCC-cccccccccCCCCCcEEEEECChhhhccCCCCeeee
Q 013904 341 RMLIARRAYRESCIFSDG-SYAKDLTILGVDLARIAIIDNSPQVFRLQLDNGIPI 394 (434)
Q Consensus 341 ~~~F~~rl~Re~c~~~~g-~y~KDL~~Lgrdl~~vIIIDDsp~~~~~qp~NgI~I 394 (434)
. +|... ..+. .+.+-++.+|.++++++.|-|+..-.......|+.+
T Consensus 69 ~-~~~~~-------~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~~~~~~ag~~~ 115 (154)
T TIGR01670 69 H-LYQGQ-------SNKLIAFSDILEKLALAPENVAYIGDDLIDWPVMEKVGLSV 115 (154)
T ss_pred E-EEecc-------cchHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCeE
Confidence 4 55431 1222 334555677889999999999998776666667663
No 74
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=97.44 E-value=7.4e-05 Score=69.98 Aligned_cols=100 Identities=18% Similarity=0.082 Sum_probs=76.4
Q ss_pred EEeecchHHHHHHHhh-cCeEEEEEcCCchHH--HHHHHHHhCCCCCeeeEEEecccceeeCC---cccccccccCCCCC
Q 013904 299 YVRQRPFLRTFLERVA-EMFEIIVFTASESVY--AEKLLDILDPDRMLIARRAYRESCIFSDG---SYAKDLTILGVDLA 372 (434)
Q Consensus 299 ~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~Y--A~~Il~~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~Lgrdl~ 372 (434)
.+.+.||+.++|+.|. ++|.++|.|++...+ +...+..++.. .+|...+..++....|+ .|.+.++++|.+++
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~-~~fd~v~~s~~~~~~KP~p~~~~~~~~~~g~~~~ 170 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIM-ALFDAVVESCLEGLRKPDPRIYQLMLERLGVAPE 170 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhH-hhCCEEEEeeecCCCCCCHHHHHHHHHHcCCCHH
Confidence 4667999999999998 679999999987654 33333333332 37888877665544443 67788889999999
Q ss_pred cEEEEECChhhhccCCCCeeeeeeecC
Q 013904 373 RIAIIDNSPQVFRLQLDNGIPIKSWFD 399 (434)
Q Consensus 373 ~vIIIDDsp~~~~~qp~NgI~I~~f~~ 399 (434)
++++|||++.........|++...+.+
T Consensus 171 ~~l~i~D~~~di~aA~~aG~~~i~v~~ 197 (211)
T TIGR02247 171 ECVFLDDLGSNLKPAAALGITTIKVSD 197 (211)
T ss_pred HeEEEcCCHHHHHHHHHcCCEEEEECC
Confidence 999999999999888888998876653
No 75
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=97.43 E-value=0.00022 Score=71.06 Aligned_cols=99 Identities=14% Similarity=0.125 Sum_probs=78.4
Q ss_pred EeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCC--CeeeEEEecccceeeCC---cccccccccCCCCCc
Q 013904 300 VRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDR--MLIARRAYRESCIFSDG---SYAKDLTILGVDLAR 373 (434)
Q Consensus 300 V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~--~~F~~rl~Re~c~~~~g---~y~KDL~~Lgrdl~~ 373 (434)
+.+.||+.+||++++ +++.++|.|++...++..+++.+.-.+ .+|... ..+++...++ .|.+.++.+|.++++
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~~~~~~~v-~~~~~~~~KP~p~~~~~a~~~~~~~p~~ 221 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPERAQGLDVF-AGDDVPKKKPDPDIYNLAAETLGVDPSR 221 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccccCceEEE-eccccCCCCCCHHHHHHHHHHhCcChHH
Confidence 478999999999998 689999999999999999999773222 223332 4555544443 567788899999999
Q ss_pred EEEEECChhhhccCCCCeeeeeeecC
Q 013904 374 IAIIDNSPQVFRLQLDNGIPIKSWFD 399 (434)
Q Consensus 374 vIIIDDsp~~~~~qp~NgI~I~~f~~ 399 (434)
+++|+|++.-+.....+|+.+.....
T Consensus 222 ~l~IGDs~~Di~aA~~aG~~~i~v~~ 247 (286)
T PLN02779 222 CVVVEDSVIGLQAAKAAGMRCIVTKS 247 (286)
T ss_pred EEEEeCCHHhHHHHHHcCCEEEEEcc
Confidence 99999999999888889988887754
No 76
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=97.42 E-value=0.00013 Score=66.28 Aligned_cols=93 Identities=14% Similarity=0.091 Sum_probs=75.5
Q ss_pred eecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCC---cccccccccCCCCCcEEE
Q 013904 301 RQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDG---SYAKDLTILGVDLARIAI 376 (434)
Q Consensus 301 ~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~Lgrdl~~vII 376 (434)
.+.||+.++|+.++ +++.++|.|++. .+..+++.++... +|+..+..++-...++ .|.+.+++++.+++++|+
T Consensus 87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~--~~~~~l~~~~l~~-~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~v~ 163 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKNNIKIALASASK--NAPTVLEKLGLID-YFDAIVDPAEIKKGKPDPEIFLAAAEGLGVSPSECIG 163 (185)
T ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCc--cHHHHHHhcCcHh-hCcEEEehhhcCCCCCChHHHHHHHHHcCCCHHHeEE
Confidence 57899999999998 779999999764 4677899988765 8988887655433343 567888899999999999
Q ss_pred EECChhhhccCCCCeeeeee
Q 013904 377 IDNSPQVFRLQLDNGIPIKS 396 (434)
Q Consensus 377 IDDsp~~~~~qp~NgI~I~~ 396 (434)
|+|++.-+.....+|++...
T Consensus 164 vgD~~~di~aA~~aG~~~i~ 183 (185)
T TIGR01990 164 IEDAQAGIEAIKAAGMFAVG 183 (185)
T ss_pred EecCHHHHHHHHHcCCEEEe
Confidence 99999988888888887653
No 77
>PLN02811 hydrolase
Probab=97.32 E-value=0.00027 Score=67.14 Aligned_cols=99 Identities=10% Similarity=0.067 Sum_probs=77.6
Q ss_pred EeecchHHHHHHHhh-cCeEEEEEcCCchHHHHH-HHHHhCCCCCeeeEEEecc--cceeeCC---cccccccccC---C
Q 013904 300 VRQRPFLRTFLERVA-EMFEIIVFTASESVYAEK-LLDILDPDRMLIARRAYRE--SCIFSDG---SYAKDLTILG---V 369 (434)
Q Consensus 300 V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~-Il~~LDP~~~~F~~rl~Re--~c~~~~g---~y~KDL~~Lg---r 369 (434)
+.+.||+.++|+.|+ ..+.++|.|++.+.++.. +.+..... .+|...++.+ ++...|+ .|.+.++.++ .
T Consensus 77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~-~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~ 155 (220)
T PLN02811 77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELF-SLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPV 155 (220)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHH-hhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCC
Confidence 457899999999998 689999999998876554 33333333 3788888877 6654443 6778888886 8
Q ss_pred CCCcEEEEECChhhhccCCCCeeeeeeecC
Q 013904 370 DLARIAIIDNSPQVFRLQLDNGIPIKSWFD 399 (434)
Q Consensus 370 dl~~vIIIDDsp~~~~~qp~NgI~I~~f~~ 399 (434)
.++++++|+|+..-+.....+|++......
T Consensus 156 ~~~~~v~IgDs~~di~aA~~aG~~~i~v~~ 185 (220)
T PLN02811 156 DPGKVLVFEDAPSGVEAAKNAGMSVVMVPD 185 (220)
T ss_pred CccceEEEeccHhhHHHHHHCCCeEEEEeC
Confidence 899999999999999888889998887643
No 78
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=97.26 E-value=0.00028 Score=65.59 Aligned_cols=91 Identities=13% Similarity=0.043 Sum_probs=73.0
Q ss_pred eecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCC---cccccccccCCCCCcEEE
Q 013904 301 RQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDG---SYAKDLTILGVDLARIAI 376 (434)
Q Consensus 301 ~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~Lgrdl~~vII 376 (434)
.+.||+.++|++++ +++.++|.|++.+. +..+++.++..+ +|...+..+++...++ .|.+.++.+|.+++++++
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l~~~~l~~-~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~ 182 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLLEALGLLE-YFDFVVTSYEVGAEKPDPKIFQEALERAGISPEEALH 182 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHCCcHH-hcceEEeecccCCCCCCHHHHHHHHHHcCCChhHEEE
Confidence 56899999999998 57999999998775 477888887754 8988888776655554 567888899999999999
Q ss_pred EECCh-hhhccCCCCeee
Q 013904 377 IDNSP-QVFRLQLDNGIP 393 (434)
Q Consensus 377 IDDsp-~~~~~qp~NgI~ 393 (434)
|+|++ .-+......|+.
T Consensus 183 IgD~~~~Di~~A~~aG~~ 200 (203)
T TIGR02252 183 IGDSLRNDYQGARAAGWR 200 (203)
T ss_pred ECCCchHHHHHHHHcCCe
Confidence 99997 456555566665
No 79
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.26 E-value=0.00065 Score=63.73 Aligned_cols=97 Identities=14% Similarity=0.110 Sum_probs=83.4
Q ss_pred EeecchHHHHHHHhhcCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCC---cccccccccCCCCCcEEE
Q 013904 300 VRQRPFLRTFLERVAEMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDG---SYAKDLTILGVDLARIAI 376 (434)
Q Consensus 300 V~lRP~l~eFL~~lsk~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~Lgrdl~~vII 376 (434)
+...|++.++|+.+.+.|+++|.|.+...++...+..++.. .+|+..++.+.....|+ .|...++++|.+++++++
T Consensus 98 ~~~~~~~~~~L~~l~~~~~l~ilTNg~~~~~~~~l~~~gl~-~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l~ 176 (229)
T COG1011 98 LPDYPEALEALKELGKKYKLGILTNGARPHQERKLRQLGLL-DYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEALF 176 (229)
T ss_pred CccChhHHHHHHHHHhhccEEEEeCCChHHHHHHHHHcCCh-hhhheEEEecccccCCCCcHHHHHHHHHcCCCcceEEE
Confidence 67889999999999977999999999999999999999954 59999999988887664 788899999999999999
Q ss_pred EECChhhh-ccCCCCeeeeeeec
Q 013904 377 IDNSPQVF-RLQLDNGIPIKSWF 398 (434)
Q Consensus 377 IDDsp~~~-~~qp~NgI~I~~f~ 398 (434)
|||+...- .....-|+.-. |.
T Consensus 177 VgD~~~~di~gA~~~G~~~v-wi 198 (229)
T COG1011 177 VGDSLENDILGARALGMKTV-WI 198 (229)
T ss_pred ECCChhhhhHHHHhcCcEEE-EE
Confidence 99999877 55556676654 43
No 80
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=97.18 E-value=0.00063 Score=63.29 Aligned_cols=82 Identities=16% Similarity=0.149 Sum_probs=68.3
Q ss_pred ecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCC---cccccccccCCCCCcEEEE
Q 013904 302 QRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDG---SYAKDLTILGVDLARIAII 377 (434)
Q Consensus 302 lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~Lgrdl~~vIII 377 (434)
..|+..++|+.++ +.+.++|.|++.+.+++.+++.++... ||...+..++... ++ .+.+.++.+|.+++++|+|
T Consensus 107 ~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~-~f~~~~~~~~~~~-KP~p~~~~~~~~~~~~~~~~~i~v 184 (197)
T TIGR01548 107 TLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEI-LFPVQIWMEDCPP-KPNPEPLILAAKALGVEACHAAMV 184 (197)
T ss_pred cccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchh-hCCEEEeecCCCC-CcCHHHHHHHHHHhCcCcccEEEE
Confidence 3455699999998 679999999999999999999998875 8998888776543 43 5677788899999999999
Q ss_pred ECChhhhc
Q 013904 378 DNSPQVFR 385 (434)
Q Consensus 378 DDsp~~~~ 385 (434)
+|++.-..
T Consensus 185 GD~~~Di~ 192 (197)
T TIGR01548 185 GDTVDDII 192 (197)
T ss_pred eCCHHHHH
Confidence 99986554
No 81
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=97.16 E-value=0.00058 Score=65.98 Aligned_cols=99 Identities=12% Similarity=0.061 Sum_probs=75.9
Q ss_pred EEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHh---CCCCCeeeEEEecccceeeC-CcccccccccCCCCCc
Q 013904 299 YVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDIL---DPDRMLIARRAYRESCIFSD-GSYAKDLTILGVDLAR 373 (434)
Q Consensus 299 ~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~L---DP~~~~F~~rl~Re~c~~~~-g~y~KDL~~Lgrdl~~ 373 (434)
...+.|++.++|+++. +++.++|+|++.......+++.+ +... ||+..+....+...+ ..|.+-++.+|.++++
T Consensus 93 ~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~-~f~~~fd~~~g~KP~p~~y~~i~~~lgv~p~e 171 (220)
T TIGR01691 93 TSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTP-YFSGYFDTTVGLKTEAQSYVKIAGQLGSPPRE 171 (220)
T ss_pred ccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhh-hcceEEEeCcccCCCHHHHHHHHHHhCcChhH
Confidence 3467899999999998 78999999999999999998886 3322 566544322121111 2678888999999999
Q ss_pred EEEEECChhhhccCCCCeeeeeeec
Q 013904 374 IAIIDNSPQVFRLQLDNGIPIKSWF 398 (434)
Q Consensus 374 vIIIDDsp~~~~~qp~NgI~I~~f~ 398 (434)
+++|+|++.-+..+...|+...-..
T Consensus 172 ~lfVgDs~~Di~AA~~AG~~ti~v~ 196 (220)
T TIGR01691 172 ILFLSDIINELDAARKAGLHTGQLV 196 (220)
T ss_pred EEEEeCCHHHHHHHHHcCCEEEEEE
Confidence 9999999998888888888876543
No 82
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.15 E-value=0.0011 Score=71.70 Aligned_cols=109 Identities=12% Similarity=0.127 Sum_probs=74.7
Q ss_pred CCceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCch----------
Q 013904 259 RKRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASES---------- 327 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~---------- 327 (434)
.+.+.+.||+||||+.+..... | .. ...-+..+-|++.+.|+.|. ++|.|+|+|+...
T Consensus 166 ~~~Kia~fD~DGTLi~t~sg~~----~------~~-~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~ 234 (526)
T TIGR01663 166 GQEKIAGFDLDGTIIKTKSGKV----F------PK-GPDDWQIIFPEIPEKLKELEADGFKICIFTNQGGIARGKINADD 234 (526)
T ss_pred ccCcEEEEECCCCccccCCCcc----C------CC-CHHHeeecccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHH
Confidence 4567999999999997532100 0 00 00111224699999999999 7899999999766
Q ss_pred --HHHHHHHHHhCCCCCeeeEEEecccceeeCC---ccccccccc----CCCCCcEEEEECCh
Q 013904 328 --VYAEKLLDILDPDRMLIARRAYRESCIFSDG---SYAKDLTIL----GVDLARIAIIDNSP 381 (434)
Q Consensus 328 --~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~L----grdl~~vIIIDDsp 381 (434)
..++.+++.|+.. |...+..+.|.+.++ .+..-++.+ +.+++++++|-|+.
T Consensus 235 ~~~ki~~iL~~lgip---fdviia~~~~~~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VGDaa 294 (526)
T TIGR01663 235 FKAKIEAIVAKLGVP---FQVFIAIGAGFYRKPLTGMWDHLKEEANDGTEIQEDDCFFVGDAA 294 (526)
T ss_pred HHHHHHHHHHHcCCc---eEEEEeCCCCCCCCCCHHHHHHHHHhcCcccCCCHHHeEEeCCcc
Confidence 4688888888763 775555555555443 444444444 47899999999997
No 83
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=97.13 E-value=0.00097 Score=61.29 Aligned_cols=95 Identities=13% Similarity=0.163 Sum_probs=70.7
Q ss_pred EeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCC-------------ccccccc
Q 013904 300 VRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDG-------------SYAKDLT 365 (434)
Q Consensus 300 V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g-------------~y~KDL~ 365 (434)
+.++||+.++|+.+. +.+.++|.|++...+++.+++.++... +|...+..+.....++ .+.+-++
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~-~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~ 157 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDY-VYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKR 157 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCe-EEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHH
Confidence 568999999999998 689999999999999999999998764 6766655332211111 1112234
Q ss_pred ccCCCCCcEEEEECChhhhccCCCCeeeee
Q 013904 366 ILGVDLARIAIIDNSPQVFRLQLDNGIPIK 395 (434)
Q Consensus 366 ~Lgrdl~~vIIIDDsp~~~~~qp~NgI~I~ 395 (434)
.+|.+++++++|.|+..-.......|+++.
T Consensus 158 ~~~~~~~~~i~iGDs~~D~~~a~~ag~~~a 187 (201)
T TIGR01491 158 ELNPSLTETVAVGDSKNDLPMFEVADISIS 187 (201)
T ss_pred HhCCCHHHEEEEcCCHhHHHHHHhcCCeEE
Confidence 568889999999999987766666777664
No 84
>PRK08238 hypothetical protein; Validated
Probab=97.08 E-value=0.0015 Score=70.09 Aligned_cols=77 Identities=14% Similarity=0.075 Sum_probs=54.5
Q ss_pred EeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCCc--ccccccccCCCCCcEEE
Q 013904 300 VRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDGS--YAKDLTILGVDLARIAI 376 (434)
Q Consensus 300 V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g~--y~KDL~~Lgrdl~~vII 376 (434)
...+|++.++|+.+. +++.++|.|++.+.++++++++++. |+..+..+.....++. ...-.+.++ .++++.
T Consensus 71 lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl----Fd~Vigsd~~~~~kg~~K~~~l~~~l~--~~~~~y 144 (479)
T PRK08238 71 LPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGL----FDGVFASDGTTNLKGAAKAAALVEAFG--ERGFDY 144 (479)
T ss_pred CCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC----CCEEEeCCCccccCCchHHHHHHHHhC--ccCeeE
Confidence 357899999999998 8899999999999999999999864 6777765543332221 111112233 345778
Q ss_pred EECChh
Q 013904 377 IDNSPQ 382 (434)
Q Consensus 377 IDDsp~ 382 (434)
+-|+..
T Consensus 145 vGDS~~ 150 (479)
T PRK08238 145 AGNSAA 150 (479)
T ss_pred ecCCHH
Confidence 888875
No 85
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=97.05 E-value=0.00026 Score=72.15 Aligned_cols=96 Identities=14% Similarity=0.133 Sum_probs=69.1
Q ss_pred EEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecc----------ccee--eCCcc-cccc
Q 013904 299 YVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRE----------SCIF--SDGSY-AKDL 364 (434)
Q Consensus 299 ~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re----------~c~~--~~g~y-~KDL 364 (434)
.+.++||+.++|+.+. .++.++|.|++...+++.+++.++... .+.+.+--. .+.. .|... .+-+
T Consensus 179 ~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~-~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la 257 (322)
T PRK11133 179 NLPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDA-AVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLA 257 (322)
T ss_pred hCCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCe-EEEeEEEEECCEEEeEecCccCCcccHHHHHHHHH
Confidence 3668999999999999 679999999999999999999988754 344332211 1111 11122 2333
Q ss_pred cccCCCCCcEEEEECChhhhccCCCCeeeee
Q 013904 365 TILGVDLARIAIIDNSPQVFRLQLDNGIPIK 395 (434)
Q Consensus 365 ~~Lgrdl~~vIIIDDsp~~~~~qp~NgI~I~ 395 (434)
+.+|.++++||.|-|+..-.......|+.|.
T Consensus 258 ~~lgi~~~qtIaVGDg~NDl~m~~~AGlgiA 288 (322)
T PRK11133 258 QEYEIPLAQTVAIGDGANDLPMIKAAGLGIA 288 (322)
T ss_pred HHcCCChhhEEEEECCHHHHHHHHHCCCeEE
Confidence 4678899999999999987776666777665
No 86
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=97.04 E-value=0.0011 Score=61.83 Aligned_cols=116 Identities=14% Similarity=0.128 Sum_probs=75.0
Q ss_pred CCceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHh
Q 013904 259 RKRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDIL 337 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~L 337 (434)
...+.+++|+||||+....... ..+ .....+.. |.+ .=++.+. ++++++|.|......+..+++.+
T Consensus 19 ~~ikli~~D~Dgtl~~~~i~~~-~~~---------~~~~~~~~-~d~--~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~l 85 (183)
T PRK09484 19 ENIRLLICDVDGVFSDGLIYMG-NNG---------EELKAFNV-RDG--YGIRCLLTSGIEVAIITGRKSKLVEDRMTTL 85 (183)
T ss_pred hCceEEEEcCCeeeecCEEEEc-CCC---------CEEEEEec-cch--HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHc
Confidence 3578999999999997631000 001 01111111 221 1233444 78999999999999999999999
Q ss_pred CCCCCeeeEEEecccceeeC-CcccccccccCCCCCcEEEEECChhhhccCCCCeeeee
Q 013904 338 DPDRMLIARRAYRESCIFSD-GSYAKDLTILGVDLARIAIIDNSPQVFRLQLDNGIPIK 395 (434)
Q Consensus 338 DP~~~~F~~rl~Re~c~~~~-g~y~KDL~~Lgrdl~~vIIIDDsp~~~~~qp~NgI~I~ 395 (434)
.... +|.. ...+ ..+.+-+..+|.++++++.|-|+..-.......|+.+.
T Consensus 86 gl~~-~f~g-------~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~aG~~~~ 136 (183)
T PRK09484 86 GITH-LYQG-------QSNKLIAFSDLLEKLAIAPEQVAYIGDDLIDWPVMEKVGLSVA 136 (183)
T ss_pred CCce-eecC-------CCcHHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHHCCCeEe
Confidence 7654 4431 1112 23445567789999999999999987766656677654
No 87
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=96.99 E-value=0.0006 Score=64.89 Aligned_cols=92 Identities=11% Similarity=0.106 Sum_probs=62.6
Q ss_pred EeecchHHHHHHHhhcCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEeccc-ceee------C---CcccccccccCC
Q 013904 300 VRQRPFLRTFLERVAEMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRES-CIFS------D---GSYAKDLTILGV 369 (434)
Q Consensus 300 V~lRP~l~eFL~~lsk~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~-c~~~------~---g~y~KDL~~Lgr 369 (434)
+.++||+.+||+.+.+.+.++|.|++...+++++++.++... +|.+++--++ -..+ + ...++.+...|
T Consensus 67 i~l~pga~ell~~lk~~~~~~IVS~~~~~~~~~il~~lgi~~-~~an~l~~~~~g~~tG~~~~~~~~K~~~l~~l~~~~- 144 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFPT-LLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKSLY- 144 (203)
T ss_pred CCCCccHHHHHHHHHhCCeEEEEeCChHHHHHHHHHHcCCch-hhceeeEEecCCeeECeeecCcchHHHHHHHHHhhC-
Confidence 568999999999999778999999999999999999999875 6765554322 1111 0 01222332223
Q ss_pred CCCcEEEEECChhhhccCCCCeeeee
Q 013904 370 DLARIAIIDNSPQVFRLQLDNGIPIK 395 (434)
Q Consensus 370 dl~~vIIIDDsp~~~~~qp~NgI~I~ 395 (434)
.+++.|-|+..-.......+++|.
T Consensus 145 --~~~v~vGDs~nDl~ml~~Ag~~ia 168 (203)
T TIGR02137 145 --YRVIAAGDSYNDTTMLSEAHAGIL 168 (203)
T ss_pred --CCEEEEeCCHHHHHHHHhCCCCEE
Confidence 368889888875544444455443
No 88
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=96.99 E-value=0.0019 Score=57.49 Aligned_cols=76 Identities=18% Similarity=0.154 Sum_probs=55.3
Q ss_pred eEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHH---------
Q 013904 262 VTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAE--------- 331 (434)
Q Consensus 262 ~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~--------- 331 (434)
+.+++||||||++.... .|. .....|.+.+.|+++. ++++|+++|+-......
T Consensus 2 K~i~~DiDGTL~~~~~~----------------~y~-~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~ 64 (126)
T TIGR01689 2 KRLVMDLDNTITLTENG----------------DYA-NVAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIH 64 (126)
T ss_pred CEEEEeCCCCcccCCCC----------------ccc-ccccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchh
Confidence 47899999999754210 000 1346889999999985 89999999999888766
Q ss_pred ---HHHHHhCCCCCeeeEEEecc-cce
Q 013904 332 ---KLLDILDPDRMLIARRAYRE-SCI 354 (434)
Q Consensus 332 ---~Il~~LDP~~~~F~~rl~Re-~c~ 354 (434)
.+++.|+.++--+...+.|. .|.
T Consensus 65 ~~~~t~~wL~k~~ipYd~l~~~kp~~~ 91 (126)
T TIGR01689 65 TLPIIILWLNQHNVPYDEIYVGKPWCG 91 (126)
T ss_pred hHHHHHHHHHHcCCCCceEEeCCCcCC
Confidence 77778877775566677754 453
No 89
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=96.99 E-value=0.0012 Score=63.71 Aligned_cols=97 Identities=11% Similarity=0.035 Sum_probs=68.2
Q ss_pred CCceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHH--HHHH
Q 013904 259 RKRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAE--KLLD 335 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~--~Il~ 335 (434)
.+...++||+||||.+.. ..-||+.++|+++. +++.++|.|++.+..++ +.++
T Consensus 6 ~~~~~~~~D~dG~l~~~~------------------------~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~ 61 (242)
T TIGR01459 6 NDYDVFLLDLWGVIIDGN------------------------HTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLK 61 (242)
T ss_pred hcCCEEEEecccccccCC------------------------ccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHH
Confidence 345689999999998652 25799999999999 68999999999888776 7788
Q ss_pred HhCCCCCeeeEEEecccceeeCCcccccccccCCCCCcEEEEECCh
Q 013904 336 ILDPDRMLIARRAYRESCIFSDGSYAKDLTILGVDLARIAIIDNSP 381 (434)
Q Consensus 336 ~LDP~~~~F~~rl~Re~c~~~~g~y~KDL~~Lgrdl~~vIIIDDsp 381 (434)
.++....+|...+....... .....-++.++..++.+++|-|+.
T Consensus 62 ~~gl~~~~~~~Ii~s~~~~~--~~l~~~~~~~~~~~~~~~~vGd~~ 105 (242)
T TIGR01459 62 SLGINADLPEMIISSGEIAV--QMILESKKRFDIRNGIIYLLGHLE 105 (242)
T ss_pred HCCCCccccceEEccHHHHH--HHHHhhhhhccCCCceEEEeCCcc
Confidence 88876436777777554321 111122234455566677777755
No 90
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=96.53 E-value=0.0026 Score=63.41 Aligned_cols=93 Identities=16% Similarity=0.139 Sum_probs=57.5
Q ss_pred CCceEEEEecccccccccccc---C-CCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHH--
Q 013904 259 RKRVTLVLDLDETLVHSSTEP---C-DDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAE-- 331 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~~~~---~-~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~-- 331 (434)
.+++.+|||+|||+++.+.-. . ....|.- ..+..-........-||+.+||+++. ++..|+|.|.....+.+
T Consensus 73 ~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~-~~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T 151 (266)
T TIGR01533 73 DKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDP-ETWDKWVQAAQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAAT 151 (266)
T ss_pred CCCCEEEEeCccccccChHHHHHHhcCCCcCCH-HHHHHHHHcCCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHH
Confidence 467899999999999876310 0 0011100 00000001123456799999999997 78999999998866555
Q ss_pred -HHHHHhCCCCCeeeEEEeccc
Q 013904 332 -KLLDILDPDRMLIARRAYRES 352 (434)
Q Consensus 332 -~Il~~LDP~~~~F~~rl~Re~ 352 (434)
..++.++.....+.+.++|+.
T Consensus 152 ~~~Lkk~Gi~~~~~d~lllr~~ 173 (266)
T TIGR01533 152 LKNLKRFGFPQADEEHLLLKKD 173 (266)
T ss_pred HHHHHHcCcCCCCcceEEeCCC
Confidence 555555554434567777763
No 91
>PTZ00445 p36-lilke protein; Provisional
Probab=96.38 E-value=0.0057 Score=59.11 Aligned_cols=131 Identities=17% Similarity=0.149 Sum_probs=81.3
Q ss_pred CCceEEEEeccccccc--cccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHH------
Q 013904 259 RKRVTLVLDLDETLVH--SSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVY------ 329 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVh--S~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~Y------ 329 (434)
.+.+++++|||.|||- |..-..... ....+.-..||.+.++++.|. ..+.|+|.|.+.+..
T Consensus 41 ~GIk~Va~D~DnTlI~~HsgG~~~~~~----------~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~ 110 (219)
T PTZ00445 41 CGIKVIASDFDLTMITKHSGGYIDPDN----------DDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENR 110 (219)
T ss_pred cCCeEEEecchhhhhhhhcccccCCCc----------chhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCC
Confidence 5778999999999985 321000000 011233457999999999998 689999999998855
Q ss_pred ---------HHHHHHHhCC----CCCe-eeEEEeccccee-----eC---Cc--c--cccccccCCCCCcEEEEECChhh
Q 013904 330 ---------AEKLLDILDP----DRML-IARRAYRESCIF-----SD---GS--Y--AKDLTILGVDLARIAIIDNSPQV 383 (434)
Q Consensus 330 ---------A~~Il~~LDP----~~~~-F~~rl~Re~c~~-----~~---g~--y--~KDL~~Lgrdl~~vIIIDDsp~~ 383 (434)
++..|+.=.- .+.| +--+++++.-.+ .+ .. | .+-+++.|.+++.+++|||++..
T Consensus 111 ~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~N 190 (219)
T PTZ00445 111 PRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNN 190 (219)
T ss_pred cceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhhhhcccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHH
Confidence 3333432111 1100 001111111100 11 12 3 45556679999999999999999
Q ss_pred hccCCCCeeeeeeecC
Q 013904 384 FRLQLDNGIPIKSWFD 399 (434)
Q Consensus 384 ~~~qp~NgI~I~~f~~ 399 (434)
+..+..-|+...-+.+
T Consensus 191 VeaA~~lGi~ai~f~~ 206 (219)
T PTZ00445 191 CKNALKEGYIALHVTG 206 (219)
T ss_pred HHHHHHCCCEEEEcCC
Confidence 9888778888777654
No 92
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=96.37 E-value=0.00099 Score=60.33 Aligned_cols=79 Identities=9% Similarity=0.082 Sum_probs=66.4
Q ss_pred EEeecchHHHHHHHhhcCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCC---cccccccccCCCCCcEE
Q 013904 299 YVRQRPFLRTFLERVAEMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDG---SYAKDLTILGVDLARIA 375 (434)
Q Consensus 299 ~V~lRP~l~eFL~~lsk~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~Lgrdl~~vI 375 (434)
.+..+||+.++|+. ++|.|++.+.++..+++.++... +|...++.+.....|+ .|.+.++++|.++++++
T Consensus 88 ~~~~~~g~~~~L~~------~~i~Tn~~~~~~~~~l~~~~l~~-~fd~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~l 160 (175)
T TIGR01493 88 NLPPWPDSAAALAR------VAILSNASHWAFDQFAQQAGLPW-YFDRAFSVDTVRAYKPDPVVYELVFDTVGLPPDRVL 160 (175)
T ss_pred cCCCCCchHHHHHH------HhhhhCCCHHHHHHHHHHCCCHH-HHhhhccHhhcCCCCCCHHHHHHHHHHHCCCHHHeE
Confidence 35679999999993 78999999999999999998765 8988887776555554 67889999999999999
Q ss_pred EEECChhhh
Q 013904 376 IIDNSPQVF 384 (434)
Q Consensus 376 IIDDsp~~~ 384 (434)
+|+|++.-.
T Consensus 161 ~vgD~~~Di 169 (175)
T TIGR01493 161 MVAAHQWDL 169 (175)
T ss_pred eEecChhhH
Confidence 999997544
No 93
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=96.22 E-value=0.0099 Score=55.25 Aligned_cols=116 Identities=11% Similarity=0.104 Sum_probs=77.5
Q ss_pred CceEEEEeccccccccccccCCCCCceeEEEecceec-eeEEeecchHHHHHHHh-hcCeEEEEEcCCchHHHHHHHHHh
Q 013904 260 KRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEH-TVYVRQRPFLRTFLERV-AEMFEIIVFTASESVYAEKLLDIL 337 (434)
Q Consensus 260 kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~-~~~V~lRP~l~eFL~~l-sk~yEIvI~Tas~~~YA~~Il~~L 337 (434)
.-+++|||.||+|.+-+. ++...+. ...+..|-+.-- +.| .+++.++|.|+....+++.+++.+
T Consensus 6 ~i~~~v~d~dGv~tdg~~------------~~~~~g~~~~~~~~~D~~~~--~~L~~~Gi~laIiT~k~~~~~~~~l~~l 71 (169)
T TIGR02726 6 NIKLVILDVDGVMTDGRI------------VINDEGIESRNFDIKDGMGV--IVLQLCGIDVAIITSKKSGAVRHRAEEL 71 (169)
T ss_pred cCeEEEEeCceeeECCeE------------EEcCCCcEEEEEecchHHHH--HHHHHCCCEEEEEECCCcHHHHHHHHHC
Confidence 467999999999976532 1111111 222334555432 233 378999999999999999999999
Q ss_pred CCCCCeeeEEEecccceeeC-CcccccccccCCCCCcEEEEECChhhhccCCCCeeeeeee
Q 013904 338 DPDRMLIARRAYRESCIFSD-GSYAKDLTILGVDLARIAIIDNSPQVFRLQLDNGIPIKSW 397 (434)
Q Consensus 338 DP~~~~F~~rl~Re~c~~~~-g~y~KDL~~Lgrdl~~vIIIDDsp~~~~~qp~NgI~I~~f 397 (434)
+... ||... ..+ ..+..-+..++.++++++.|.|++.-.......|+.+..-
T Consensus 72 gi~~-~f~~~-------kpkp~~~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag~~~am~ 124 (169)
T TIGR02726 72 KIKR-FHEGI-------KKKTEPYAQMLEEMNISDAEVCYVGDDLVDLSMMKRVGLAVAVG 124 (169)
T ss_pred CCcE-EEecC-------CCCHHHHHHHHHHcCcCHHHEEEECCCHHHHHHHHHCCCeEECc
Confidence 8864 66532 111 1445556677889999999999998765554566655543
No 94
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=96.16 E-value=0.016 Score=56.29 Aligned_cols=59 Identities=24% Similarity=0.251 Sum_probs=52.0
Q ss_pred CceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhC
Q 013904 260 KRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILD 338 (434)
Q Consensus 260 kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LD 338 (434)
..+.+++||||||+.+.. ...|.+.+.|+++. ++..++|.|......+.++++.|.
T Consensus 2 ~~kli~~DlDGTLl~~~~-----------------------~i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~ 58 (264)
T COG0561 2 MIKLLAFDLDGTLLDSNK-----------------------TISPETKEALARLREKGVKVVLATGRPLPDVLSILEELG 58 (264)
T ss_pred CeeEEEEcCCCCccCCCC-----------------------ccCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcC
Confidence 467899999999998743 16889999999886 899999999999999999999998
Q ss_pred CCC
Q 013904 339 PDR 341 (434)
Q Consensus 339 P~~ 341 (434)
...
T Consensus 59 ~~~ 61 (264)
T COG0561 59 LDG 61 (264)
T ss_pred CCc
Confidence 875
No 95
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=95.97 E-value=0.0048 Score=59.51 Aligned_cols=90 Identities=10% Similarity=0.060 Sum_probs=69.6
Q ss_pred EeecchHHHHHHHhhcCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCC---cccccccccCCCCCcEEE
Q 013904 300 VRQRPFLRTFLERVAEMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDG---SYAKDLTILGVDLARIAI 376 (434)
Q Consensus 300 V~lRP~l~eFL~~lsk~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~Lgrdl~~vII 376 (434)
+..-||+.++|+.|++.|.++|.|++... ++.++.. .||...+..+.....|+ .|.+.++++|.+++++++
T Consensus 112 ~~~~~gv~~~L~~L~~~~~l~i~Tn~~~~-----~~~~gl~-~~fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~ 185 (238)
T PRK10748 112 IDVPQATHDTLKQLAKKWPLVAITNGNAQ-----PELFGLG-DYFEFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEILH 185 (238)
T ss_pred CCCCccHHHHHHHHHcCCCEEEEECCCch-----HHHCCcH-HhhceeEecccCCcCCCcHHHHHHHHHHcCCChhHEEE
Confidence 44559999999999988999999998875 3555554 48888887665544443 667888889999999999
Q ss_pred EECCh-hhhccCCCCeeeee
Q 013904 377 IDNSP-QVFRLQLDNGIPIK 395 (434)
Q Consensus 377 IDDsp-~~~~~qp~NgI~I~ 395 (434)
|.|++ .-+.....+|+...
T Consensus 186 VGD~~~~Di~~A~~aG~~~i 205 (238)
T PRK10748 186 VGDDLTTDVAGAIRCGMQAC 205 (238)
T ss_pred EcCCcHHHHHHHHHCCCeEE
Confidence 99984 66666667888765
No 96
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=95.95 E-value=0.022 Score=55.95 Aligned_cols=58 Identities=21% Similarity=0.205 Sum_probs=48.3
Q ss_pred ceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCC
Q 013904 261 RVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDP 339 (434)
Q Consensus 261 K~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP 339 (434)
.+.+++||||||+.+.. ...|...+.|+.+. +++.++|.|.-....+..+++.++.
T Consensus 4 ~kli~~DlDGTLl~~~~-----------------------~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l 60 (273)
T PRK00192 4 KLLVFTDLDGTLLDHHT-----------------------YSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGL 60 (273)
T ss_pred ceEEEEcCcccCcCCCC-----------------------cCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCC
Confidence 56899999999997521 13577899999999 6799999999999999999999876
Q ss_pred CC
Q 013904 340 DR 341 (434)
Q Consensus 340 ~~ 341 (434)
..
T Consensus 61 ~~ 62 (273)
T PRK00192 61 ED 62 (273)
T ss_pred CC
Confidence 53
No 97
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=95.92 E-value=0.0039 Score=59.91 Aligned_cols=86 Identities=16% Similarity=0.251 Sum_probs=64.7
Q ss_pred EeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeC---C------cccccc----c
Q 013904 300 VRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSD---G------SYAKDL----T 365 (434)
Q Consensus 300 V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~---g------~y~KDL----~ 365 (434)
.+++||+.+.++.++ .++.++|.|+|...++++|.+.|+.+. .+..++..++-.++. | ...+-| +
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~-~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~ 154 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDY-VVANELEIDDGKLTGRVVGPICDGEGKAKALRELAA 154 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCch-heeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHH
Confidence 789999999999999 779999999999999999999999886 577777755411221 1 111222 2
Q ss_pred ccCCCCCcEEEEECChhhhcc
Q 013904 366 ILGVDLARIAIIDNSPQVFRL 386 (434)
Q Consensus 366 ~Lgrdl~~vIIIDDsp~~~~~ 386 (434)
.+|.++++++-+=|+..-...
T Consensus 155 ~~g~~~~~~~a~gDs~nDlpm 175 (212)
T COG0560 155 ELGIPLEETVAYGDSANDLPM 175 (212)
T ss_pred HcCCCHHHeEEEcCchhhHHH
Confidence 348888899998888775533
No 98
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=95.77 E-value=0.023 Score=52.12 Aligned_cols=107 Identities=19% Similarity=0.232 Sum_probs=58.1
Q ss_pred eEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCc---h----------
Q 013904 262 VTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASE---S---------- 327 (434)
Q Consensus 262 ~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~---~---------- 327 (434)
|.+.||||||||.......-.. ...-+..+-|++.+-|+++. +.|.|+|+|.-. +
T Consensus 1 Kia~fD~DgTLi~~~s~~~f~~-----------~~~D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~ 69 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSGKKFPK-----------DPDDWKFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENF 69 (159)
T ss_dssp SEEEE-SCTTTEE-STSTTS-S-----------STCGGEEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHH
T ss_pred CEEEEeCCCCccCCCCCCcCcC-----------CHHHhhhcchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHH
Confidence 4689999999998854221100 01112345678999999999 789999999752 1
Q ss_pred -HHHHHHHHHhCCCCCeeeEEEe--cccceeeC-CcccccccccC----CCCCcEEEEECChh
Q 013904 328 -VYAEKLLDILDPDRMLIARRAY--RESCIFSD-GSYAKDLTILG----VDLARIAIIDNSPQ 382 (434)
Q Consensus 328 -~YA~~Il~~LDP~~~~F~~rl~--Re~c~~~~-g~y~KDL~~Lg----rdl~~vIIIDDsp~ 382 (434)
...+.+++.|+-. +...+. .+.|..-. |++..-++.++ .|+++.++|=|+..
T Consensus 70 ~~ki~~il~~l~ip---~~~~~a~~~d~~RKP~~GM~~~~~~~~~~~~~id~~~Sf~VGDaag 129 (159)
T PF08645_consen 70 HEKIENILKELGIP---IQVYAAPHKDPCRKPNPGMWEFALKDYNDGVEIDLANSFYVGDAAG 129 (159)
T ss_dssp HHHHHHHHHHCTS----EEEEECGCSSTTSTTSSHHHHHHCCCTSTT--S-CCC-EEEESSCH
T ss_pred HHHHHHHHHHcCCc---eEEEecCCCCCCCCCchhHHHHHHHhccccccccccceEEEeccCC
Confidence 2334455555332 222222 22233222 34444444443 58999999999643
No 99
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=95.74 E-value=0.023 Score=52.95 Aligned_cols=54 Identities=24% Similarity=0.300 Sum_probs=45.8
Q ss_pred EEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCC
Q 013904 264 LVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPD 340 (434)
Q Consensus 264 LVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~ 340 (434)
|++||||||+++... .-|...+.|+.+. ++..++|.|.-....+..+++.+.-.
T Consensus 1 i~~DlDGTLl~~~~~-----------------------i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~ 55 (254)
T PF08282_consen 1 IFSDLDGTLLNSDGK-----------------------ISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGID 55 (254)
T ss_dssp EEEECCTTTCSTTSS-----------------------SCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHC
T ss_pred cEEEECCceecCCCe-----------------------eCHHHHHHHHhhcccceEEEEEccCcccccccccccccch
Confidence 689999999986421 4578899999998 89999999999999999999977644
No 100
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=95.68 E-value=0.02 Score=48.54 Aligned_cols=50 Identities=20% Similarity=0.229 Sum_probs=37.4
Q ss_pred EEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHh
Q 013904 264 LVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDIL 337 (434)
Q Consensus 264 LVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~L 337 (434)
++||+||||.+.. ..=||+.+||+++. ++..+++.|++...-.+.+++.|
T Consensus 1 ~l~D~dGvl~~g~------------------------~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L 51 (101)
T PF13344_consen 1 FLFDLDGVLYNGN------------------------EPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL 51 (101)
T ss_dssp EEEESTTTSEETT------------------------EE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH
T ss_pred CEEeCccEeEeCC------------------------CcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH
Confidence 5899999998742 24699999999999 67999999999865555555544
No 101
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=95.65 E-value=0.027 Score=53.32 Aligned_cols=94 Identities=12% Similarity=0.050 Sum_probs=65.0
Q ss_pred EEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEe--cccceeeCC-------------cccc
Q 013904 299 YVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAY--RESCIFSDG-------------SYAK 362 (434)
Q Consensus 299 ~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~--Re~c~~~~g-------------~y~K 362 (434)
.+.+|||+.+||+.+. +++.++|.|++...+++.+++.+.+...++..++. .+.....++ ...+
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~ 147 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPS 147 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHH
Confidence 4689999999999999 57999999999999999999998654434443333 111111111 0123
Q ss_pred cccccCCCCCcEEEEECChhhhccCCCCee
Q 013904 363 DLTILGVDLARIAIIDNSPQVFRLQLDNGI 392 (434)
Q Consensus 363 DL~~Lgrdl~~vIIIDDsp~~~~~qp~NgI 392 (434)
-++.++...+.++.|-|+..-+.....+++
T Consensus 148 ~l~~~~~~~~~~i~iGDg~~D~~~a~~Ad~ 177 (214)
T TIGR03333 148 LIRKLSEPNDYHIVIGDSVTDVEAAKQSDL 177 (214)
T ss_pred HHHHHhhcCCcEEEEeCCHHHHHHHHhCCe
Confidence 344445567889999999987766555555
No 102
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=95.60 E-value=0.036 Score=54.41 Aligned_cols=59 Identities=20% Similarity=0.246 Sum_probs=47.9
Q ss_pred CCceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHh
Q 013904 259 RKRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDIL 337 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~L 337 (434)
+.++.+++||||||++... ..-|-..+-|+++. ++..++|.|.-....+.++++.|
T Consensus 5 ~~~~lI~~DlDGTLL~~~~-----------------------~i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l 61 (271)
T PRK03669 5 QDPLLIFTDLDGTLLDSHT-----------------------YDWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTL 61 (271)
T ss_pred CCCeEEEEeCccCCcCCCC-----------------------cCcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHh
Confidence 4678999999999997621 12345777888888 78999999999999999999999
Q ss_pred CCC
Q 013904 338 DPD 340 (434)
Q Consensus 338 DP~ 340 (434)
+..
T Consensus 62 ~~~ 64 (271)
T PRK03669 62 GLQ 64 (271)
T ss_pred CCC
Confidence 764
No 103
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=95.56 E-value=0.033 Score=54.11 Aligned_cols=57 Identities=14% Similarity=0.214 Sum_probs=47.3
Q ss_pred ceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCC
Q 013904 261 RVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDP 339 (434)
Q Consensus 261 K~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP 339 (434)
.+.+++||||||++... .+-|...+.|+++. ++..++|.|.-....+.++++.|+.
T Consensus 3 ~kli~~DlDGTLl~~~~-----------------------~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~ 59 (270)
T PRK10513 3 IKLIAIDMDGTLLLPDH-----------------------TISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKELHM 59 (270)
T ss_pred eEEEEEecCCcCcCCCC-----------------------ccCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHhCC
Confidence 46889999999997631 14566788899998 7799999999999999999999876
Q ss_pred C
Q 013904 340 D 340 (434)
Q Consensus 340 ~ 340 (434)
.
T Consensus 60 ~ 60 (270)
T PRK10513 60 E 60 (270)
T ss_pred C
Confidence 4
No 104
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=95.50 E-value=0.041 Score=53.21 Aligned_cols=58 Identities=24% Similarity=0.286 Sum_probs=45.2
Q ss_pred ceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCC
Q 013904 261 RVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDP 339 (434)
Q Consensus 261 K~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP 339 (434)
.+.+++||||||+.... .+.|...+-|+++. ++..++|.|.-....+..+++.|+.
T Consensus 3 ~kli~~DlDGTLl~~~~-----------------------~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~ 59 (272)
T PRK10530 3 YRVIALDLDGTLLTPKK-----------------------TILPESLEALARAREAGYKVIIVTGRHHVAIHPFYQALAL 59 (272)
T ss_pred ccEEEEeCCCceECCCC-----------------------ccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCC
Confidence 46889999999997632 14566777788887 6789999998888888888888876
Q ss_pred CC
Q 013904 340 DR 341 (434)
Q Consensus 340 ~~ 341 (434)
..
T Consensus 60 ~~ 61 (272)
T PRK10530 60 DT 61 (272)
T ss_pred CC
Confidence 53
No 105
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=95.47 E-value=0.032 Score=52.09 Aligned_cols=110 Identities=17% Similarity=0.256 Sum_probs=81.6
Q ss_pred CCceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHh
Q 013904 259 RKRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDIL 337 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~L 337 (434)
...+.+|+|||+|||-=.. -..-|-+.+.+..+. ++-.++|.|+..+.-+..++..|
T Consensus 26 ~Gikgvi~DlDNTLv~wd~----------------------~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l 83 (175)
T COG2179 26 HGIKGVILDLDNTLVPWDN----------------------PDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKL 83 (175)
T ss_pred cCCcEEEEeccCceecccC----------------------CCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhc
Confidence 6788999999999985321 114688999999999 67999999999999999999999
Q ss_pred CCCCCeeeEEEecccceeeCCcccccccccCCCCCcEEEEECChh--hhccCCCCe---eeeeeec
Q 013904 338 DPDRMLIARRAYRESCIFSDGSYAKDLTILGVDLARIAIIDNSPQ--VFRLQLDNG---IPIKSWF 398 (434)
Q Consensus 338 DP~~~~F~~rl~Re~c~~~~g~y~KDL~~Lgrdl~~vIIIDDsp~--~~~~qp~Ng---I~I~~f~ 398 (434)
|-.- -++--.. ..-.+-|.|+.++.++++|+.|-|.-. +...+ -+| |.|+|-.
T Consensus 84 ~v~f---i~~A~KP----~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggn-r~G~~tIlV~Pl~ 141 (175)
T COG2179 84 GVPF---IYRAKKP----FGRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGN-RAGMRTILVEPLV 141 (175)
T ss_pred CCce---eecccCc----cHHHHHHHHHHcCCChhHEEEEcchhhhhhhccc-ccCcEEEEEEEec
Confidence 8763 1111111 111567889999999999999999976 44444 344 5666655
No 106
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=95.47 E-value=0.04 Score=51.91 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=47.6
Q ss_pred eEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCC
Q 013904 262 VTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPD 340 (434)
Q Consensus 262 ~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~ 340 (434)
+.+++||||||+.... ..-|...+-|+++. +++.++|.|......+.++++.|+..
T Consensus 2 k~v~~DlDGTLl~~~~-----------------------~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~ 58 (215)
T TIGR01487 2 KLVAIDIDGTLTEPNR-----------------------MISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTS 58 (215)
T ss_pred cEEEEecCCCcCCCCc-----------------------ccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCC
Confidence 4789999999996421 25678888899998 67999999999999999999999876
Q ss_pred C
Q 013904 341 R 341 (434)
Q Consensus 341 ~ 341 (434)
.
T Consensus 59 ~ 59 (215)
T TIGR01487 59 G 59 (215)
T ss_pred C
Confidence 4
No 107
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=95.33 E-value=0.057 Score=50.96 Aligned_cols=58 Identities=12% Similarity=0.169 Sum_probs=47.6
Q ss_pred ceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCC
Q 013904 261 RVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDP 339 (434)
Q Consensus 261 K~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP 339 (434)
.+.+++||||||+.+.. .+.|...+-|+++. ++..++|.|.-....+.++++.|+.
T Consensus 3 ~kli~~DlDGTLl~~~~-----------------------~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~ 59 (230)
T PRK01158 3 IKAIAIDIDGTITDKDR-----------------------RLSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGT 59 (230)
T ss_pred eeEEEEecCCCcCCCCC-----------------------ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCC
Confidence 46889999999996521 15677888899988 6799999999999999999999886
Q ss_pred CC
Q 013904 340 DR 341 (434)
Q Consensus 340 ~~ 341 (434)
..
T Consensus 60 ~~ 61 (230)
T PRK01158 60 SG 61 (230)
T ss_pred CC
Confidence 64
No 108
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=95.25 E-value=0.053 Score=54.42 Aligned_cols=105 Identities=14% Similarity=0.247 Sum_probs=68.7
Q ss_pred EEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCC---CCCeeeEEEecccceeeCC-------cccc-----
Q 013904 299 YVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDP---DRMLIARRAYRESCIFSDG-------SYAK----- 362 (434)
Q Consensus 299 ~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP---~~~~F~~rl~Re~c~~~~g-------~y~K----- 362 (434)
.+.+|||+.+||+.|. .+..++|+|+|...+++.++..++. ....+++++--+......| .+.|
T Consensus 119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v~ 198 (277)
T TIGR01544 119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDVA 198 (277)
T ss_pred CCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHHH
Confidence 4789999999999998 6799999999999999999998654 2245555555321111111 1122
Q ss_pred --cccccC--CCCCcEEEEECChhhhcc-----CCCCeeeeeeecCCCCch
Q 013904 363 --DLTILG--VDLARIAIIDNSPQVFRL-----QLDNGIPIKSWFDDPSDC 404 (434)
Q Consensus 363 --DL~~Lg--rdl~~vIIIDDsp~~~~~-----qp~NgI~I~~f~~d~~D~ 404 (434)
....++ .++++||+|.|+..-... +.+|.|.| .|..+.-+.
T Consensus 199 ~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~~~~~~~l~i-gfln~~~e~ 248 (277)
T TIGR01544 199 LRNTEYFNQLKDRSNIILLGDSQGDLRMADGVANVEHILKI-GYLNDRVDE 248 (277)
T ss_pred HHHHHHhCccCCcceEEEECcChhhhhHhcCCCcccceEEE-EecccCHHH
Confidence 112235 678899999999985533 22344444 454444443
No 109
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=95.14 E-value=0.049 Score=52.47 Aligned_cols=53 Identities=23% Similarity=0.238 Sum_probs=43.7
Q ss_pred EEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCC
Q 013904 264 LVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPD 340 (434)
Q Consensus 264 LVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~ 340 (434)
+++||||||++... .-|...++|+++. ++..+++.|.-.+..+..+++.|+..
T Consensus 2 i~~DlDGTLl~~~~------------------------~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~ 55 (225)
T TIGR02461 2 IFTDLDGTLLPPGY------------------------EPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVE 55 (225)
T ss_pred EEEeCCCCCcCCCC------------------------CchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC
Confidence 68899999998421 2356899999998 67999999999999888999888754
No 110
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=95.14 E-value=0.055 Score=52.83 Aligned_cols=58 Identities=17% Similarity=0.171 Sum_probs=45.7
Q ss_pred ceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCC
Q 013904 261 RVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDP 339 (434)
Q Consensus 261 K~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP 339 (434)
.+.+++||||||+.+.. .+-|...+-|+++. ++..++|.|.-....+.++++.++.
T Consensus 2 ~kli~~DlDGTLl~~~~-----------------------~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~ 58 (272)
T PRK15126 2 ARLAAFDMDGTLLMPDH-----------------------HLGEKTLSTLARLRERDITLTFATGRHVLEMQHILGALSL 58 (272)
T ss_pred ccEEEEeCCCcCcCCCC-----------------------cCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCC
Confidence 35889999999997531 14566778888887 6789999999888888888888876
Q ss_pred CC
Q 013904 340 DR 341 (434)
Q Consensus 340 ~~ 341 (434)
..
T Consensus 59 ~~ 60 (272)
T PRK15126 59 DA 60 (272)
T ss_pred CC
Confidence 54
No 111
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=95.13 E-value=0.0076 Score=56.22 Aligned_cols=83 Identities=22% Similarity=0.308 Sum_probs=45.4
Q ss_pred EeecchHHHHHHHhhcC-eEEEEEcCCchH-H---H---HHHHHHhCCCCCeeeEEEecccceeeCCcccccccccCCCC
Q 013904 300 VRQRPFLRTFLERVAEM-FEIIVFTASESV-Y---A---EKLLDILDPDRMLIARRAYRESCIFSDGSYAKDLTILGVDL 371 (434)
Q Consensus 300 V~lRP~l~eFL~~lsk~-yEIvI~Tas~~~-Y---A---~~Il~~LDP~~~~F~~rl~Re~c~~~~g~y~KDL~~Lgrdl 371 (434)
...-||+.|.|+.|.+. +++++.|+.... + + ...|+..=|. ..+...++..+ |. .++.|
T Consensus 72 l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~-i~~~~~~~~~~---------K~--~v~~D- 138 (191)
T PF06941_consen 72 LPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPF-IPYDNLIFTGD---------KT--LVGGD- 138 (191)
T ss_dssp --B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTH-HHHCCEEEESS---------GG--GC--S-
T ss_pred CCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCC-CchheEEEecC---------CC--eEecc-
Confidence 56779999999999955 577777766543 1 2 2233332111 12223333211 32 34444
Q ss_pred CcEEEEECChhhhccCCCCeeeeeeec
Q 013904 372 ARIAIIDNSPQVFRLQLDNGIPIKSWF 398 (434)
Q Consensus 372 ~~vIIIDDsp~~~~~qp~NgI~I~~f~ 398 (434)
++|||++.........|+++.-|.
T Consensus 139 ---vlIDD~~~n~~~~~~~g~~~iLfd 162 (191)
T PF06941_consen 139 ---VLIDDRPHNLEQFANAGIPVILFD 162 (191)
T ss_dssp ---EEEESSSHHHSS-SSESSEEEEE-
T ss_pred ---EEecCChHHHHhccCCCceEEEEc
Confidence 799999999877777887776664
No 112
>PRK10976 putative hydrolase; Provisional
Probab=95.12 E-value=0.057 Score=52.38 Aligned_cols=58 Identities=19% Similarity=0.258 Sum_probs=44.3
Q ss_pred ceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCC
Q 013904 261 RVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDP 339 (434)
Q Consensus 261 K~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP 339 (434)
.+.+++||||||+++.. .+-|...+-|+++. ++..++|.|.-....+.++++.|+.
T Consensus 2 ikli~~DlDGTLl~~~~-----------------------~is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~ 58 (266)
T PRK10976 2 YQVVASDLDGTLLSPDH-----------------------TLSPYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNLEI 58 (266)
T ss_pred ceEEEEeCCCCCcCCCC-----------------------cCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCC
Confidence 36889999999997632 13456677788877 6788888888888888888888776
Q ss_pred CC
Q 013904 340 DR 341 (434)
Q Consensus 340 ~~ 341 (434)
..
T Consensus 59 ~~ 60 (266)
T PRK10976 59 KS 60 (266)
T ss_pred CC
Confidence 53
No 113
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=95.12 E-value=0.051 Score=52.50 Aligned_cols=56 Identities=20% Similarity=0.306 Sum_probs=45.1
Q ss_pred EEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCC
Q 013904 263 TLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDR 341 (434)
Q Consensus 263 tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~ 341 (434)
.+++||||||++... ...|...+.|+++. ++..++|.|......+..+++.++...
T Consensus 1 li~~DlDGTLl~~~~-----------------------~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~~ 57 (256)
T TIGR00099 1 LIFIDLDGTLLNDDH-----------------------TISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLDT 57 (256)
T ss_pred CEEEeCCCCCCCCCC-----------------------ccCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCCC
Confidence 368999999997521 14567788888888 679999999999999999998887653
No 114
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.04 E-value=0.032 Score=59.59 Aligned_cols=131 Identities=17% Similarity=0.196 Sum_probs=78.0
Q ss_pred CCCCcccCCceEEEEeccccccccccccCCCCCceeEEEecc--eeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchH
Q 013904 252 LVPKETERKRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNM--KEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESV 328 (434)
Q Consensus 252 llpk~~~~kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~--~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~ 328 (434)
+++......+++||||||+||.--. ...|-.--+.+.. .+..+ --+++|...+. +++=+.|+|.....
T Consensus 213 l~~A~~g~~kK~LVLDLDNTLWGGV----IGedGv~GI~Ls~~~~G~~f-----k~fQ~~Ik~l~kqGVlLav~SKN~~~ 283 (574)
T COG3882 213 LLAAMSGKSKKALVLDLDNTLWGGV----IGEDGVDGIRLSNSAEGEAF-----KTFQNFIKGLKKQGVLLAVCSKNTEK 283 (574)
T ss_pred HHHHhhCcccceEEEecCCcccccc----cccccccceeecCCCCchhH-----HHHHHHHHHHHhccEEEEEecCCchh
Confidence 3334444688999999999995432 2222211121111 01111 12567777777 78999999999999
Q ss_pred HHHHHHHHhCCCCCeeeEEEeccc-ceee------CC-cccccccccCCCCCcEEEEECChhhhccCCCCe-eeeeeec
Q 013904 329 YAEKLLDILDPDRMLIARRAYRES-CIFS------DG-SYAKDLTILGVDLARIAIIDNSPQVFRLQLDNG-IPIKSWF 398 (434)
Q Consensus 329 YA~~Il~~LDP~~~~F~~rl~Re~-c~~~------~g-~y~KDL~~Lgrdl~~vIIIDDsp~~~~~qp~Ng-I~I~~f~ 398 (434)
-|..+...- | +.+.+++ -... ++ +..|-.++|+..++-.|+|||.|.-.-.-..++ +.|++|-
T Consensus 284 da~evF~kh-p------~MiLkeedfa~~~iNW~~K~eNirkIAkklNlg~dSmvFiDD~p~ErE~vk~~~~v~Vi~~~ 355 (574)
T COG3882 284 DAKEVFRKH-P------DMILKEEDFAVFQINWDPKAENIRKIAKKLNLGLDSMVFIDDNPAERELVKRELPVSVIEFP 355 (574)
T ss_pred hHHHHHhhC-C------CeEeeHhhhhhheecCCcchhhHHHHHHHhCCCccceEEecCCHHHHHHHHhcCceeeccCC
Confidence 998887651 2 2233222 1111 11 334566678999999999999998664433333 5555553
No 115
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=95.01 E-value=0.062 Score=50.66 Aligned_cols=54 Identities=24% Similarity=0.261 Sum_probs=44.0
Q ss_pred EEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCC
Q 013904 264 LVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPD 340 (434)
Q Consensus 264 LVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~ 340 (434)
+++||||||+++... .-|-..+.|+.+. ++..++|.|......+..+++.++..
T Consensus 2 i~~DlDGTLL~~~~~-----------------------~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 2 VFSDLDGTLLDSHSY-----------------------DWQPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred EEEeCCCCCcCCCCC-----------------------CcHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 689999999976310 1233789999988 67999999999999999999998754
No 116
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=94.85 E-value=0.042 Score=51.89 Aligned_cols=119 Identities=19% Similarity=0.252 Sum_probs=80.8
Q ss_pred ceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCc------------h
Q 013904 261 RVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASE------------S 327 (434)
Q Consensus 261 K~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~------------~ 327 (434)
.+.|+||.||||+--... +.. ..--..+.||+.+-|..+. ..|.++|+|.-. .
T Consensus 5 ~k~lflDRDGtin~d~~~------yv~--------~~~~~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~ 70 (181)
T COG0241 5 QKALFLDRDGTINIDKGD------YVD--------SLDDFQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFD 70 (181)
T ss_pred CcEEEEcCCCceecCCCc------ccC--------cHHHhccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHH
Confidence 579999999999743110 100 0012357899999999997 679999999832 2
Q ss_pred HHHHHHHHHhCCCCCeeeEEEeccc-----ceeeC---CcccccccccCCCCCcEEEEECChhhhccCCCCeee
Q 013904 328 VYAEKLLDILDPDRMLIARRAYRES-----CIFSD---GSYAKDLTILGVDLARIAIIDNSPQVFRLQLDNGIP 393 (434)
Q Consensus 328 ~YA~~Il~~LDP~~~~F~~rl~Re~-----c~~~~---g~y~KDL~~Lgrdl~~vIIIDDsp~~~~~qp~NgI~ 393 (434)
.+-+.+++.|--.+--|+.+++..| |...+ |.+..-++..+.|+++.++|=|+..-.+++...||.
T Consensus 71 ~~~~~m~~~l~~~gv~id~i~~Cph~p~~~c~cRKP~~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~ 144 (181)
T COG0241 71 KLHNKMLKILASQGVKIDGILYCPHHPEDNCDCRKPKPGMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGIK 144 (181)
T ss_pred HHHHHHHHHHHHcCCccceEEECCCCCCCCCcccCCChHHHHHHHHHhCCCccceEEecCcHHHHHHHHHCCCC
Confidence 2333466666666666899999433 54444 366777778889999999999997655554444443
No 117
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=94.40 E-value=0.1 Score=49.03 Aligned_cols=54 Identities=13% Similarity=0.222 Sum_probs=43.1
Q ss_pred EEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCC
Q 013904 264 LVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPD 340 (434)
Q Consensus 264 LVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~ 340 (434)
+++||||||+++.. .+.|-..+-|+++. ++..++|.|.-....+.++++.|+..
T Consensus 1 i~~DlDGTLl~~~~-----------------------~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~~ 55 (225)
T TIGR01482 1 IASDIDGTLTDPNR-----------------------AINESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIGTP 55 (225)
T ss_pred CeEeccCccCCCCc-----------------------ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCC
Confidence 57999999997631 14566777888888 67999999999999899999888743
No 118
>PTZ00174 phosphomannomutase; Provisional
Probab=94.36 E-value=0.1 Score=50.64 Aligned_cols=53 Identities=23% Similarity=0.298 Sum_probs=40.6
Q ss_pred CceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHH
Q 013904 260 KRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLD 335 (434)
Q Consensus 260 kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~ 335 (434)
+.+.+++||||||+++.. .+-|...+-|+++. ++..++|.|.....-+...++
T Consensus 4 ~~klia~DlDGTLL~~~~-----------------------~is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~ 57 (247)
T PTZ00174 4 KKTILLFDVDGTLTKPRN-----------------------PITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQLG 57 (247)
T ss_pred CCeEEEEECcCCCcCCCC-----------------------CCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHh
Confidence 467899999999998732 14567788889988 679999999977665555554
No 119
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=94.29 E-value=0.098 Score=47.86 Aligned_cols=62 Identities=18% Similarity=0.241 Sum_probs=43.0
Q ss_pred EEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHH---HHHHHh
Q 013904 264 LVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAE---KLLDIL 337 (434)
Q Consensus 264 LVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~---~Il~~L 337 (434)
+++|+||||+.+..... .... -+. . ...|++.++++++. ++|.+++.|+.....+. +.+..+
T Consensus 2 VisDIDGTL~~sd~~~~-----~~~~--~~~-~----~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~ 67 (157)
T smart00775 2 VISDIDGTITKSDVLGH-----VVPI--IGK-D----WTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQI 67 (157)
T ss_pred EEEecCCCCcccccccc-----cccc--ccc-C----cCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHh
Confidence 68999999998742110 0000 000 0 24799999999999 78999999999888775 555553
No 120
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=94.20 E-value=0.12 Score=48.30 Aligned_cols=94 Identities=21% Similarity=0.326 Sum_probs=64.9
Q ss_pred CCceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhhcCe---EEEEEcCCc-------hH
Q 013904 259 RKRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVAEMF---EIIVFTASE-------SV 328 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~lsk~y---EIvI~Tas~-------~~ 328 (434)
..-+.||||+|+||+.... -..-|.+.+.++++.+.| .|+|+|++. ..
T Consensus 39 ~Gik~li~DkDNTL~~~~~----------------------~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~ 96 (168)
T PF09419_consen 39 KGIKALIFDKDNTLTPPYE----------------------DEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGE 96 (168)
T ss_pred cCceEEEEcCCCCCCCCCc----------------------CcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHH
Confidence 5788999999999975421 235688899999999654 399999984 77
Q ss_pred HHHHHHHHhCCCCCeeeEEEecccceeeCCcccccccccC-----CCCCcEEEEECChh
Q 013904 329 YAEKLLDILDPDRMLIARRAYRESCIFSDGSYAKDLTILG-----VDLARIAIIDNSPQ 382 (434)
Q Consensus 329 YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g~y~KDL~~Lg-----rdl~~vIIIDDsp~ 382 (434)
-|+.+-+.|+.. .|.|+.-...| +.+-++.++ ..++++++|-|+-.
T Consensus 97 ~a~~~~~~lgIp--vl~h~~kKP~~------~~~i~~~~~~~~~~~~p~eiavIGDrl~ 147 (168)
T PF09419_consen 97 RAEALEKALGIP--VLRHRAKKPGC------FREILKYFKCQKVVTSPSEIAVIGDRLF 147 (168)
T ss_pred HHHHHHHhhCCc--EEEeCCCCCcc------HHHHHHHHhhccCCCCchhEEEEcchHH
Confidence 888888888753 34444322322 122222232 35899999999875
No 121
>PRK10444 UMP phosphatase; Provisional
Probab=94.03 E-value=0.086 Score=51.74 Aligned_cols=54 Identities=20% Similarity=0.344 Sum_probs=44.5
Q ss_pred eEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCC
Q 013904 262 VTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDP 339 (434)
Q Consensus 262 ~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP 339 (434)
+.+++||||||++.. ..-|+..+||+.+. ++..+++.|.....-...+++.|.-
T Consensus 2 ~~v~~DlDGtL~~~~------------------------~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~ 56 (248)
T PRK10444 2 KNVICDIDGVLMHDN------------------------VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFAT 56 (248)
T ss_pred cEEEEeCCCceEeCC------------------------eeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 478999999998762 13689999999999 6899999999998877777777643
No 122
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=94.03 E-value=0.11 Score=50.35 Aligned_cols=54 Identities=24% Similarity=0.224 Sum_probs=43.8
Q ss_pred EEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCC
Q 013904 264 LVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPD 340 (434)
Q Consensus 264 LVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~ 340 (434)
+++||||||++... ...+...++++.+. ++..++|.|.-....+..+++.++..
T Consensus 2 i~~DlDGTll~~~~-----------------------~~~~~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~ 56 (256)
T TIGR01486 2 IFTDLDGTLLDPHG-----------------------YDWGPAKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLE 56 (256)
T ss_pred EEEcCCCCCcCCCC-----------------------cCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 68999999998631 02235789999998 57999999999999999999998753
No 123
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=93.55 E-value=0.15 Score=47.45 Aligned_cols=54 Identities=26% Similarity=0.319 Sum_probs=43.7
Q ss_pred EEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhC
Q 013904 263 TLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILD 338 (434)
Q Consensus 263 tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LD 338 (434)
.+++|+||||+.... ....|.+.+.|+++. ++..++|.|......+..+++.++
T Consensus 1 li~~D~DgTL~~~~~----------------------~~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~~ 55 (204)
T TIGR01484 1 LLFFDLDGTLLDPNA----------------------HELSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQLP 55 (204)
T ss_pred CEEEeCcCCCcCCCC----------------------CcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhCC
Confidence 378899999997420 124688999999999 558999999999999999998753
No 124
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=93.53 E-value=0.23 Score=44.56 Aligned_cols=85 Identities=18% Similarity=0.286 Sum_probs=58.1
Q ss_pred EEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccc-eee-------------CCccccc
Q 013904 299 YVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESC-IFS-------------DGSYAKD 363 (434)
Q Consensus 299 ~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c-~~~-------------~g~y~KD 363 (434)
.+.++|++.++|+.+. +++.++|.|++.+.+++.+++.++... +|..++.-+.. ... |...++.
T Consensus 71 ~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~-~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~~ 149 (177)
T TIGR01488 71 QVALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDD-VFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLKE 149 (177)
T ss_pred cCCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCch-heeeeEEECCCCEEeCccCCcccCCcchHHHHHHH
Confidence 3567999999999998 679999999999999999999998764 66666543211 101 0011111
Q ss_pred -ccccCCCCCcEEEEECChhhh
Q 013904 364 -LTILGVDLARIAIIDNSPQVF 384 (434)
Q Consensus 364 -L~~Lgrdl~~vIIIDDsp~~~ 384 (434)
+...+.++++++.|-|+..-+
T Consensus 150 ~~~~~~~~~~~~~~iGDs~~D~ 171 (177)
T TIGR01488 150 LLEESKITLKKIIAVGDSVNDL 171 (177)
T ss_pred HHHHhCCCHHHEEEEeCCHHHH
Confidence 122355677888888876543
No 125
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=93.45 E-value=0.12 Score=51.25 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=34.6
Q ss_pred ceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCch
Q 013904 261 RVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASES 327 (434)
Q Consensus 261 K~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~ 327 (434)
-+.+++|+||||++.. ..-|++.++|+++. ++..+++.|++..
T Consensus 2 ~~~~~~D~DGtl~~~~------------------------~~~~ga~e~l~~L~~~g~~~~~~Tnns~ 45 (279)
T TIGR01452 2 AQGFIFDCDGVLWLGE------------------------RVVPGAPELLDRLARAGKAALFVTNNST 45 (279)
T ss_pred ccEEEEeCCCceEcCC------------------------eeCcCHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3578999999997752 13588999999999 6799999998653
No 126
>PLN02645 phosphoglycolate phosphatase
Probab=93.31 E-value=0.12 Score=52.13 Aligned_cols=55 Identities=9% Similarity=0.039 Sum_probs=42.9
Q ss_pred CCceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHh
Q 013904 259 RKRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDIL 337 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~L 337 (434)
.+.+.++||+||||++... .=||+.++|+++. ++..+++.|+........+++.|
T Consensus 26 ~~~~~~~~D~DGtl~~~~~------------------------~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l 81 (311)
T PLN02645 26 DSVETFIFDCDGVIWKGDK------------------------LIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKF 81 (311)
T ss_pred HhCCEEEEeCcCCeEeCCc------------------------cCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHH
Confidence 3567899999999986521 2399999999998 78999999998866655555544
No 127
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=93.18 E-value=0.25 Score=50.22 Aligned_cols=57 Identities=14% Similarity=0.167 Sum_probs=45.7
Q ss_pred eEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCC
Q 013904 262 VTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPD 340 (434)
Q Consensus 262 ~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~ 340 (434)
+.+++||||||++... | .-+-+.+-|+++. +...+++.|+-...-+..+.+.|...
T Consensus 2 KLIftDLDGTLLd~~~---------------------~--~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~ 58 (302)
T PRK12702 2 RLVLSSLDGSLLDLEF---------------------N--SYGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLE 58 (302)
T ss_pred cEEEEeCCCCCcCCCC---------------------c--CCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 5788899999998631 1 2244778889998 77999999999999999999998865
Q ss_pred C
Q 013904 341 R 341 (434)
Q Consensus 341 ~ 341 (434)
.
T Consensus 59 ~ 59 (302)
T PRK12702 59 H 59 (302)
T ss_pred C
Confidence 4
No 128
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=93.10 E-value=0.16 Score=51.55 Aligned_cols=53 Identities=19% Similarity=0.249 Sum_probs=41.6
Q ss_pred eEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhhc-----CeEEEEEcCCc----hHHHHH
Q 013904 262 VTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVAE-----MFEIIVFTASE----SVYAEK 332 (434)
Q Consensus 262 ~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~lsk-----~yEIvI~Tas~----~~YA~~ 332 (434)
+.++||+||||+++.. .-|+..+||+.+.. ...+.++|+.. +.+++.
T Consensus 1 ~~~ifD~DGvL~~g~~------------------------~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~ 56 (321)
T TIGR01456 1 FGFAFDIDGVLFRGKK------------------------PIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEE 56 (321)
T ss_pred CEEEEeCcCceECCcc------------------------ccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHH
Confidence 4689999999998742 36899999999995 88899999775 456777
Q ss_pred HHHHhC
Q 013904 333 LLDILD 338 (434)
Q Consensus 333 Il~~LD 338 (434)
+.+.++
T Consensus 57 l~~~lG 62 (321)
T TIGR01456 57 ISSLLG 62 (321)
T ss_pred HHHHcC
Confidence 656554
No 129
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=93.10 E-value=0.12 Score=50.79 Aligned_cols=54 Identities=17% Similarity=0.197 Sum_probs=38.5
Q ss_pred eEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHH
Q 013904 262 VTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLD 335 (434)
Q Consensus 262 ~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~ 335 (434)
+.++|||||||++..... -..-|+..++|+.+. ++..+++.|.....-...+.+
T Consensus 2 k~i~~D~DGtl~~~~~~~--------------------~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~ 56 (257)
T TIGR01458 2 KGVLLDISGVLYISDAKS--------------------GVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLE 56 (257)
T ss_pred CEEEEeCCCeEEeCCCcc--------------------cCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHH
Confidence 478999999998763100 013589999999999 689999999866553333333
No 130
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=92.73 E-value=0.17 Score=46.73 Aligned_cols=91 Identities=23% Similarity=0.213 Sum_probs=62.0
Q ss_pred eecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEec-ccceeeC---C--c----ccccc----c
Q 013904 301 RQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYR-ESCIFSD---G--S----YAKDL----T 365 (434)
Q Consensus 301 ~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~R-e~c~~~~---g--~----y~KDL----~ 365 (434)
.++|++.++|+.+. +++.++|.|++...+++.+++.++... +|..++.. ++-.+.. + . ..+.+ .
T Consensus 87 ~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~-~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~~ 165 (202)
T TIGR01490 87 ILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDN-AIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAELLA 165 (202)
T ss_pred hccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcc-eEecceEEcCCCEEeCCccCCCCCChHHHHHHHHHHH
Confidence 57999999999998 679999999999999999999998875 67765442 2211110 0 0 01112 2
Q ss_pred ccCCCCCcEEEEECChhhhccCCCCee
Q 013904 366 ILGVDLARIAIIDNSPQVFRLQLDNGI 392 (434)
Q Consensus 366 ~Lgrdl~~vIIIDDsp~~~~~qp~NgI 392 (434)
..+.+++.++.+-|++.-...-...+.
T Consensus 166 ~~~~~~~~~~~~gDs~~D~~~~~~a~~ 192 (202)
T TIGR01490 166 EEQIDLKDSYAYGDSISDLPLLSLVGH 192 (202)
T ss_pred HcCCCHHHcEeeeCCcccHHHHHhCCC
Confidence 346677888888888876544333343
No 131
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=92.54 E-value=0.3 Score=44.73 Aligned_cols=83 Identities=18% Similarity=0.242 Sum_probs=50.9
Q ss_pred EeecchHHHHHHHhhcCeEEEEEcCCchHH------HHHHHHHhCCCCCeeeEEEecccceeeCCcccccccccCCCCCc
Q 013904 300 VRQRPFLRTFLERVAEMFEIIVFTASESVY------AEKLLDILDPDRMLIARRAYRESCIFSDGSYAKDLTILGVDLAR 373 (434)
Q Consensus 300 V~lRP~l~eFL~~lsk~yEIvI~Tas~~~Y------A~~Il~~LDP~~~~F~~rl~Re~c~~~~g~y~KDL~~Lgrdl~~ 373 (434)
...-||.++-++++-++|+|+|.|+++..+ .+.+... -|--.+ .+.+++. .|++=+ -
T Consensus 67 L~V~p~aq~v~keLt~~y~vYivtaamdhp~s~~dK~eWl~E~-FPFi~~-qn~vfCg---------nKnivk------a 129 (180)
T COG4502 67 LGVQPFAQTVLKELTSIYNVYIVTAAMDHPKSCEDKGEWLKEK-FPFISY-QNIVFCG---------NKNIVK------A 129 (180)
T ss_pred cCccccHHHHHHHHHhhheEEEEEeccCCchhHHHHHHHHHHH-CCCCCh-hhEEEec---------CCCeEE------e
Confidence 456899999999999999999999995432 2222222 111000 1222221 133321 1
Q ss_pred EEEEECChhhhccCCCCeeeeeeecC
Q 013904 374 IAIIDNSPQVFRLQLDNGIPIKSWFD 399 (434)
Q Consensus 374 vIIIDDsp~~~~~qp~NgI~I~~f~~ 399 (434)
=++|||.|........|-|....-+.
T Consensus 130 DilIDDnp~nLE~F~G~kIlFdA~HN 155 (180)
T COG4502 130 DILIDDNPLNLENFKGNKILFDAHHN 155 (180)
T ss_pred eEEecCCchhhhhccCceEEEecccc
Confidence 35899999888777777777766654
No 132
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=92.51 E-value=0.19 Score=49.67 Aligned_cols=101 Identities=15% Similarity=0.163 Sum_probs=68.8
Q ss_pred EEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecc---------------cceeeCC----
Q 013904 299 YVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRE---------------SCIFSDG---- 358 (434)
Q Consensus 299 ~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re---------------~c~~~~g---- 358 (434)
+...-|.+.+|++.++ ++..++..|+....+...-++.|---+--|+...+++ .-.+.+|
T Consensus 79 ~~lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft 158 (252)
T PF11019_consen 79 MELIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFT 158 (252)
T ss_pred eEEcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEe
Confidence 3456789999999999 7899999999999988888777633332233332111 1112222
Q ss_pred -------cccccccccCCCCCcEEEEECChhhh----ccCCCCeeeeeeecC
Q 013904 359 -------SYAKDLTILGVDLARIAIIDNSPQVF----RLQLDNGIPIKSWFD 399 (434)
Q Consensus 359 -------~y~KDL~~Lgrdl~~vIIIDDsp~~~----~~qp~NgI~I~~f~~ 399 (434)
....=|.++|..++++|+|||+.... ......+|..-.|+.
T Consensus 159 ~~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Y 210 (252)
T PF11019_consen 159 GGQDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFHY 210 (252)
T ss_pred CCCccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEE
Confidence 11233456699999999999999866 334458888888864
No 133
>PLN02887 hydrolase family protein
Probab=92.37 E-value=0.29 Score=54.01 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=48.3
Q ss_pred CCceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHh
Q 013904 259 RKRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDIL 337 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~L 337 (434)
.+.+.+++||||||+++.. .+-|...+-|+++. ++..++|.|.-...-+..+++.|
T Consensus 306 ~~iKLIa~DLDGTLLn~d~-----------------------~Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L 362 (580)
T PLN02887 306 PKFSYIFCDMDGTLLNSKS-----------------------QISETNAKALKEALSRGVKVVIATGKARPAVIDILKMV 362 (580)
T ss_pred cCccEEEEeCCCCCCCCCC-----------------------ccCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHh
Confidence 4567899999999997632 14566778888888 78999999999999999999988
Q ss_pred CCC
Q 013904 338 DPD 340 (434)
Q Consensus 338 DP~ 340 (434)
+..
T Consensus 363 ~l~ 365 (580)
T PLN02887 363 DLA 365 (580)
T ss_pred Ccc
Confidence 754
No 134
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=92.11 E-value=0.56 Score=52.57 Aligned_cols=59 Identities=17% Similarity=0.138 Sum_probs=46.9
Q ss_pred CCceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHh
Q 013904 259 RKRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDIL 337 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~L 337 (434)
.+++.+++||||||++... ++ -+...+-|+.+. ++..++|.|.-....+..+++.|
T Consensus 414 ~~~KLIfsDLDGTLLd~d~---------------------~i--~~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~L 470 (694)
T PRK14502 414 QFKKIVYTDLDGTLLNPLT---------------------YS--YSTALDALRLLKDKELPLVFCSAKTMGEQDLYRNEL 470 (694)
T ss_pred ceeeEEEEECcCCCcCCCC---------------------cc--CHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHc
Confidence 6788899999999998631 11 123567788887 67999999999999999999998
Q ss_pred CCC
Q 013904 338 DPD 340 (434)
Q Consensus 338 DP~ 340 (434)
+..
T Consensus 471 gl~ 473 (694)
T PRK14502 471 GIK 473 (694)
T ss_pred CCC
Confidence 764
No 135
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=91.69 E-value=0.25 Score=48.31 Aligned_cols=90 Identities=11% Similarity=-0.002 Sum_probs=53.4
Q ss_pred CCceEEEEeccccccccccc---cCCCC-CceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHH
Q 013904 259 RKRVTLVLDLDETLVHSSTE---PCDDA-DFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKL 333 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~~~---~~~~~-d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~I 333 (434)
.+|..+|||+|+|++....- +.... .+.. ..+..--..---..-|++.+|++++. ++++|++.|.-.....+..
T Consensus 75 dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~-~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T 153 (229)
T TIGR01675 75 DGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDP-TAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNAT 153 (229)
T ss_pred CCCcEEEEccccccccCHHHHHHhccCCCcCCH-HHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHH
Confidence 57889999999999987531 11110 0000 00000000112346899999999997 7899999999987664444
Q ss_pred HH---HhCCCCCeeeEEEecc
Q 013904 334 LD---ILDPDRMLIARRAYRE 351 (434)
Q Consensus 334 l~---~LDP~~~~F~~rl~Re 351 (434)
++ ..+-.+ +.+.+.|.
T Consensus 154 ~~nL~~~G~~~--~~~LiLR~ 172 (229)
T TIGR01675 154 LDNLINAGFTG--WKHLILRG 172 (229)
T ss_pred HHHHHHcCCCC--cCeeeecC
Confidence 43 444332 35566675
No 136
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=91.52 E-value=0.31 Score=47.52 Aligned_cols=55 Identities=18% Similarity=0.273 Sum_probs=39.2
Q ss_pred eEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCc---hHHHHHHHHHh
Q 013904 262 VTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASE---SVYAEKLLDIL 337 (434)
Q Consensus 262 ~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~---~~YA~~Il~~L 337 (434)
..++|||||||++... .-|+..++|+++. ++..+++.|.+. ...+...++.+
T Consensus 2 ~~~~~D~DGtl~~~~~------------------------~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~ 57 (249)
T TIGR01457 2 KGYLIDLDGTMYKGKE------------------------RIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASF 57 (249)
T ss_pred CEEEEeCCCceEcCCe------------------------eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHc
Confidence 4789999999987521 2378999999998 779999999633 34444455555
Q ss_pred CCC
Q 013904 338 DPD 340 (434)
Q Consensus 338 DP~ 340 (434)
+..
T Consensus 58 g~~ 60 (249)
T TIGR01457 58 DIP 60 (249)
T ss_pred CCC
Confidence 543
No 137
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=91.46 E-value=0.29 Score=49.06 Aligned_cols=55 Identities=22% Similarity=0.205 Sum_probs=42.0
Q ss_pred CCceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHh
Q 013904 259 RKRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDIL 337 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~L 337 (434)
.+..+++|||||||++-. ..=||..+||+++. +.-.+++-|++...-.+.+..+|
T Consensus 6 ~~y~~~l~DlDGvl~~G~------------------------~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L 61 (269)
T COG0647 6 DKYDGFLFDLDGVLYRGN------------------------EAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARL 61 (269)
T ss_pred hhcCEEEEcCcCceEeCC------------------------ccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 456689999999998763 24699999999999 66999999998765444444433
No 138
>PLN02423 phosphomannomutase
Probab=90.54 E-value=0.57 Score=45.67 Aligned_cols=54 Identities=20% Similarity=0.325 Sum_probs=36.9
Q ss_pred CceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhhcCeEEEEEcCCchHHHHHHHHHhCC
Q 013904 260 KRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVAEMFEIIVFTASESVYAEKLLDILDP 339 (434)
Q Consensus 260 kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~lsk~yEIvI~Tas~~~YA~~Il~~LDP 339 (434)
.+..+++||||||+++.. .+-|...+.|+++.+...++|.|.... ..+.+.+.+
T Consensus 6 ~~~i~~~D~DGTLl~~~~-----------------------~i~~~~~~ai~~l~~~i~fviaTGR~~---~~~~~~~~~ 59 (245)
T PLN02423 6 PGVIALFDVDGTLTAPRK-----------------------EATPEMLEFMKELRKVVTVGVVGGSDL---SKISEQLGK 59 (245)
T ss_pred cceEEEEeccCCCcCCCC-----------------------cCCHHHHHHHHHHHhCCEEEEECCcCH---HHHHHHhcc
Confidence 344566999999997632 135677888999997777778777633 355555544
No 139
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=90.43 E-value=0.2 Score=49.34 Aligned_cols=97 Identities=10% Similarity=-0.022 Sum_probs=75.5
Q ss_pred EEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCC---cccccccccCCCCCcE
Q 013904 299 YVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDG---SYAKDLTILGVDLARI 374 (434)
Q Consensus 299 ~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~Lgrdl~~v 374 (434)
+....|-+ ++|+.+. +++.|+|.|+...++= .++..++.. .||++.+..-.-...|+ .|.+.|.+++..++.+
T Consensus 112 ~~~~~~~~-~~lq~lR~~g~~l~iisN~d~r~~-~~l~~~~l~-~~fD~vv~S~e~g~~KPDp~If~~al~~l~v~Pee~ 188 (237)
T KOG3085|consen 112 WKYLDGMQ-ELLQKLRKKGTILGIISNFDDRLR-LLLLPLGLS-AYFDFVVESCEVGLEKPDPRIFQLALERLGVKPEEC 188 (237)
T ss_pred ceeccHHH-HHHHHHHhCCeEEEEecCCcHHHH-HHhhccCHH-HhhhhhhhhhhhccCCCChHHHHHHHHHhCCChHHe
Confidence 33445555 9999999 7899999999988877 777777776 58998886443333443 7889999999999999
Q ss_pred EEEECChhh-hccCCCCeeeeeeec
Q 013904 375 AIIDNSPQV-FRLQLDNGIPIKSWF 398 (434)
Q Consensus 375 IIIDDsp~~-~~~qp~NgI~I~~f~ 398 (434)
|.|||.... +..+..-|+.-.-|.
T Consensus 189 vhIgD~l~nD~~gA~~~G~~ailv~ 213 (237)
T KOG3085|consen 189 VHIGDLLENDYEGARNLGWHAILVD 213 (237)
T ss_pred EEecCccccccHhHHHcCCEEEEEc
Confidence 999999998 777766666655555
No 140
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=90.41 E-value=0.4 Score=47.42 Aligned_cols=62 Identities=18% Similarity=0.106 Sum_probs=44.5
Q ss_pred CCceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhhc--CeEEEEEcCCchHHHHHHHHH
Q 013904 259 RKRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVAE--MFEIIVFTASESVYAEKLLDI 336 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~lsk--~yEIvI~Tas~~~YA~~Il~~ 336 (434)
.++..|++|+||||+.....+. ....-|.+.+-|+.+.+ ...++|.|.-...-+..++..
T Consensus 12 ~~~~li~~D~DGTLl~~~~~p~------------------~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~ 73 (266)
T PRK10187 12 SANYAWFFDLDGTLAEIKPHPD------------------QVVVPDNILQGLQLLATANDGALALISGRSMVELDALAKP 73 (266)
T ss_pred CCCEEEEEecCCCCCCCCCCcc------------------cccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCc
Confidence 3468899999999997532110 01234788888998874 678899998888888777765
Q ss_pred hC
Q 013904 337 LD 338 (434)
Q Consensus 337 LD 338 (434)
++
T Consensus 74 ~~ 75 (266)
T PRK10187 74 YR 75 (266)
T ss_pred cc
Confidence 43
No 141
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=89.99 E-value=0.61 Score=45.07 Aligned_cols=61 Identities=23% Similarity=0.110 Sum_probs=43.2
Q ss_pred ceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhhc-CeEEEEEcCCchHHHHHHHHHhCC
Q 013904 261 RVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVAE-MFEIIVFTASESVYAEKLLDILDP 339 (434)
Q Consensus 261 K~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~lsk-~yEIvI~Tas~~~YA~~Il~~LDP 339 (434)
++.++.||||||+++... --...|.+.+.++.+.+ +-.+++.|.-+..-+.++++.+.+
T Consensus 1 ~~li~tDlDGTLl~~~~~--------------------~~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~ 60 (249)
T TIGR01485 1 RLLLVSDLDNTLVDHTDG--------------------DNQALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPL 60 (249)
T ss_pred CeEEEEcCCCcCcCCCCC--------------------ChHHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCC
Confidence 357888999999964210 01246888888888874 447888888888888888877665
Q ss_pred CC
Q 013904 340 DR 341 (434)
Q Consensus 340 ~~ 341 (434)
..
T Consensus 61 ~~ 62 (249)
T TIGR01485 61 LT 62 (249)
T ss_pred CC
Confidence 43
No 142
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=89.44 E-value=0.49 Score=45.77 Aligned_cols=51 Identities=25% Similarity=0.344 Sum_probs=38.3
Q ss_pred EEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCc----hHHHHHHHHHhC
Q 013904 264 LVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASE----SVYAEKLLDILD 338 (434)
Q Consensus 264 LVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~----~~YA~~Il~~LD 338 (434)
++||+||||+++.. .=|++.++|+.+. +.+.+.+.|++. ..+++.+.++++
T Consensus 1 ~lfD~DGvL~~~~~------------------------~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g 56 (236)
T TIGR01460 1 FLFDIDGVLWLGHK------------------------PIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLG 56 (236)
T ss_pred CEEeCcCccCcCCc------------------------cCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 48999999988732 2468999999998 569999998554 456666666443
No 143
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=88.75 E-value=0.87 Score=49.87 Aligned_cols=86 Identities=12% Similarity=0.072 Sum_probs=60.9
Q ss_pred EEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCCcccccccccCCCCCcEEEE
Q 013904 299 YVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDGSYAKDLTILGVDLARIAII 377 (434)
Q Consensus 299 ~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g~y~KDL~~Lgrdl~~vIII 377 (434)
...+||++.+++++++ ++++++|.|...+.+|+.+++.++.+ +|... ....+... ++.+....++|+.|
T Consensus 403 ~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~--~~~~~-----~p~~K~~~---v~~l~~~~~~v~~V 472 (562)
T TIGR01511 403 EDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN--VRAEV-----LPDDKAAL---IKELQEKGRVVAMV 472 (562)
T ss_pred cccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc--EEccC-----ChHHHHHH---HHHHHHcCCEEEEE
Confidence 4568999999999998 67999999999999999999999874 33211 00111122 23334456889999
Q ss_pred ECChhhhccCCCCeeee
Q 013904 378 DNSPQVFRLQLDNGIPI 394 (434)
Q Consensus 378 DDsp~~~~~qp~NgI~I 394 (434)
-|...-...-...++.|
T Consensus 473 GDg~nD~~al~~A~vgi 489 (562)
T TIGR01511 473 GDGINDAPALAQADVGI 489 (562)
T ss_pred eCCCccHHHHhhCCEEE
Confidence 99887665544566655
No 144
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=87.71 E-value=2.3 Score=44.12 Aligned_cols=56 Identities=21% Similarity=0.242 Sum_probs=47.9
Q ss_pred ceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHh-C------CCCCeeeEEEecc
Q 013904 296 HTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDIL-D------PDRMLIARRAYRE 351 (434)
Q Consensus 296 ~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~L-D------P~~~~F~~rl~Re 351 (434)
..-|+.+-|++.++|+.+. ++..+.|.|++.+.|++.+++.+ + .+..||+.++...
T Consensus 179 p~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD~IIt~a 242 (343)
T TIGR02244 179 PEKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFDVVIVDA 242 (343)
T ss_pred HHHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCcEEEeCC
Confidence 3567888999999999998 67999999999999999999997 5 3467898777743
No 145
>PLN03017 trehalose-phosphatase
Probab=86.46 E-value=1.1 Score=46.93 Aligned_cols=60 Identities=18% Similarity=0.246 Sum_probs=45.1
Q ss_pred CCceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhhcCeEEEEEcCCchHHHHHHHHH
Q 013904 259 RKRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVAEMFEIIVFTASESVYAEKLLDI 336 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~lsk~yEIvI~Tas~~~YA~~Il~~ 336 (434)
.++..|+||+||||+--...+ -....-|.+.+-|+++.+.+.++|.|--...-+..++..
T Consensus 109 ~k~~llflD~DGTL~Piv~~p------------------~~a~i~~~~~~aL~~La~~~~vaIvSGR~~~~l~~~~~l 168 (366)
T PLN03017 109 GKQIVMFLDYDGTLSPIVDDP------------------DKAFMSSKMRRTVKKLAKCFPTAIVTGRCIDKVYNFVKL 168 (366)
T ss_pred CCCeEEEEecCCcCcCCcCCc------------------ccccCCHHHHHHHHHHhcCCcEEEEeCCCHHHHHHhhcc
Confidence 467889999999998322100 012355888999999999999999999998888887543
No 146
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=86.46 E-value=0.88 Score=41.71 Aligned_cols=79 Identities=11% Similarity=0.146 Sum_probs=59.8
Q ss_pred eEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCC---cccccccccCCCCCc
Q 013904 298 VYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDG---SYAKDLTILGVDLAR 373 (434)
Q Consensus 298 ~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g---~y~KDL~~Lgrdl~~ 373 (434)
..-.+||++.++|+.|. .++.++|.|......|..+++.++... ..++.+.. .++ .+.+-++.|+.+.+.
T Consensus 124 ~~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~----~~v~a~~~--~kP~~k~~~~~i~~l~~~~~~ 197 (215)
T PF00702_consen 124 LRDPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFD----SIVFARVI--GKPEPKIFLRIIKELQVKPGE 197 (215)
T ss_dssp EEEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCS----EEEEESHE--TTTHHHHHHHHHHHHTCTGGG
T ss_pred ecCcchhhhhhhhhhhhccCcceeeeecccccccccccccccccc----cccccccc--ccccchhHHHHHHHHhcCCCE
Confidence 34567999999999999 569999999999999999999998843 22332211 122 345666677888889
Q ss_pred EEEEECChh
Q 013904 374 IAIIDNSPQ 382 (434)
Q Consensus 374 vIIIDDsp~ 382 (434)
|+.|-|...
T Consensus 198 v~~vGDg~n 206 (215)
T PF00702_consen 198 VAMVGDGVN 206 (215)
T ss_dssp EEEEESSGG
T ss_pred EEEEccCHH
Confidence 999999874
No 147
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=84.00 E-value=1 Score=44.66 Aligned_cols=85 Identities=20% Similarity=0.200 Sum_probs=47.4
Q ss_pred CCceEEEEeccccccccccccC----CCCCceeEEEecceecee-----EEeecchHHHHHHHhhc-CeEEEEEcCCchH
Q 013904 259 RKRVTLVLDLDETLVHSSTEPC----DDADFTFQVFFNMKEHTV-----YVRQRPFLRTFLERVAE-MFEIIVFTASESV 328 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~~~~~----~~~d~~~~v~~~~~~~~~-----~V~lRP~l~eFL~~lsk-~yEIvI~Tas~~~ 328 (434)
.+++.+|+|||||.++-+.-.+ ....| ....-.. --+.-||+.|||+++-+ +-.|+--|.-.+.
T Consensus 77 ~K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f------~pe~Wd~wV~a~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~ 150 (274)
T COG2503 77 GKKKAVVLDLDETVLDNSAYQGYQVLNNKGF------TPETWDKWVQAKKSKAVPGAVEFLNYVNSNGGKIFYISNRDQE 150 (274)
T ss_pred CCCceEEEecchHhhcCccccchhhhcCCCC------CccchHHHHhhcccccCccHHHHHHHHHhcCcEEEEEeccchh
Confidence 5677999999999998754221 01111 1111111 23567999999999995 4555555555444
Q ss_pred H-HHHH---HHHhCCCCCeeeEEEe
Q 013904 329 Y-AEKL---LDILDPDRMLIARRAY 349 (434)
Q Consensus 329 Y-A~~I---l~~LDP~~~~F~~rl~ 349 (434)
. ...- |+.++..+..-++.|+
T Consensus 151 ~~~~~T~~nLk~~g~~~~~~~~~ll 175 (274)
T COG2503 151 NEKDGTIENLKSEGLPQVLESHLLL 175 (274)
T ss_pred cccchhHHHHHHcCcccccccceEE
Confidence 4 2333 3333444433445555
No 148
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=83.89 E-value=1.9 Score=47.02 Aligned_cols=88 Identities=13% Similarity=0.086 Sum_probs=64.0
Q ss_pred eEEeecchHHHHHHHhh-cC-eEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCCcccccccccCCCCCcEE
Q 013904 298 VYVRQRPFLRTFLERVA-EM-FEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDGSYAKDLTILGVDLARIA 375 (434)
Q Consensus 298 ~~V~lRP~l~eFL~~ls-k~-yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g~y~KDL~~Lgrdl~~vI 375 (434)
.....||++.+.|+++. ++ ++++|.|...+.+|+.+++.++... +|... .. ..+ .+-++.++....+|+
T Consensus 381 ~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~-~f~~~-~p----~~K---~~~v~~l~~~~~~v~ 451 (556)
T TIGR01525 381 LRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDE-VHAEL-LP----EDK---LAIVKELQEEGGVVA 451 (556)
T ss_pred ecccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCe-eeccC-CH----HHH---HHHHHHHHHcCCEEE
Confidence 34568999999999998 67 9999999999999999999999864 55432 11 011 223334444556999
Q ss_pred EEECChhhhccCCCCeeee
Q 013904 376 IIDNSPQVFRLQLDNGIPI 394 (434)
Q Consensus 376 IIDDsp~~~~~qp~NgI~I 394 (434)
.|-|...-.......++-|
T Consensus 452 ~vGDg~nD~~al~~A~vgi 470 (556)
T TIGR01525 452 MVGDGINDAPALAAADVGI 470 (556)
T ss_pred EEECChhHHHHHhhCCEeE
Confidence 9999998765555566554
No 149
>PLN02151 trehalose-phosphatase
Probab=83.78 E-value=1.7 Score=45.21 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=46.1
Q ss_pred CCceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhhcCeEEEEEcCCchHHHHHHHH
Q 013904 259 RKRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVAEMFEIIVFTASESVYAEKLLD 335 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~lsk~yEIvI~Tas~~~YA~~Il~ 335 (434)
.++..|+||+||||+--.. .+..+..-|.+.+-|+.+++.+.++|.|--...-+..++.
T Consensus 96 ~~~~ll~lDyDGTL~PIv~------------------~P~~A~~~~~~~~aL~~La~~~~vaIvSGR~~~~l~~~~~ 154 (354)
T PLN02151 96 GKQIVMFLDYDGTLSPIVD------------------DPDRAFMSKKMRNTVRKLAKCFPTAIVSGRCREKVSSFVK 154 (354)
T ss_pred CCceEEEEecCccCCCCCC------------------CcccccCCHHHHHHHHHHhcCCCEEEEECCCHHHHHHHcC
Confidence 4678899999999984321 1122446789999999999889999999988888887775
No 150
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=83.64 E-value=3.1 Score=39.92 Aligned_cols=42 Identities=14% Similarity=0.276 Sum_probs=37.8
Q ss_pred EeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCC
Q 013904 300 VRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDR 341 (434)
Q Consensus 300 V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~ 341 (434)
+++|||.++|.+++. +.-.++|.|+|+..|..+++..+--+.
T Consensus 72 i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke 114 (220)
T COG4359 72 IKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKE 114 (220)
T ss_pred cccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhcccc
Confidence 789999999999999 669999999999999999999876443
No 151
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=82.00 E-value=0.61 Score=43.22 Aligned_cols=15 Identities=40% Similarity=0.620 Sum_probs=13.3
Q ss_pred EEEEecccccccccc
Q 013904 263 TLVLDLDETLVHSST 277 (434)
Q Consensus 263 tLVLDLD~TLVhS~~ 277 (434)
.+||||||||++|..
T Consensus 2 ~viFD~DGTLiDs~~ 16 (197)
T TIGR01548 2 ALVLDMDGVMADVSQ 16 (197)
T ss_pred ceEEecCceEEechH
Confidence 589999999999964
No 152
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=80.31 E-value=2.3 Score=40.56 Aligned_cols=53 Identities=19% Similarity=0.233 Sum_probs=36.3
Q ss_pred EEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhhcCeEEEEEcCCchHHHHHHHHHhCCC
Q 013904 264 LVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVAEMFEIIVFTASESVYAEKLLDILDPD 340 (434)
Q Consensus 264 LVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~lsk~yEIvI~Tas~~~YA~~Il~~LDP~ 340 (434)
+++||||||++.... +.|.. +-++...++..++|.|.-...-+..+++.++..
T Consensus 2 i~~DlDgTLl~~~~~-----------------------~~~~~-~~~~~~~~gi~~viaTGR~~~~v~~~~~~l~l~ 54 (236)
T TIGR02471 2 IITDLDNTLLGDDEG-----------------------LASFV-ELLRGSGDAVGFGIATGRSVESAKSRYAKLNLP 54 (236)
T ss_pred eEEeccccccCCHHH-----------------------HHHHH-HHHHhcCCCceEEEEeCCCHHHHHHHHHhCCCC
Confidence 678999999975210 12222 555533367778888888888888888877654
No 153
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=79.74 E-value=2 Score=46.81 Aligned_cols=89 Identities=12% Similarity=0.089 Sum_probs=65.5
Q ss_pred eEEeecchHHHHHHHhh-cCe-EEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCCcccccccccCCCCCcEE
Q 013904 298 VYVRQRPFLRTFLERVA-EMF-EIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDGSYAKDLTILGVDLARIA 375 (434)
Q Consensus 298 ~~V~lRP~l~eFL~~ls-k~y-EIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g~y~KDL~~Lgrdl~~vI 375 (434)
....+||++.+.|+++. +++ +++|.|...+.+|+.+++.++... +|....- ....+-++.++...++|+
T Consensus 359 ~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~-~f~~~~p--------~~K~~~i~~l~~~~~~v~ 429 (536)
T TIGR01512 359 LSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDE-VHAELLP--------EDKLEIVKELREKYGPVA 429 (536)
T ss_pred EeccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChh-hhhccCc--------HHHHHHHHHHHhcCCEEE
Confidence 34568999999999999 679 999999999999999999998865 4432211 111334445566668999
Q ss_pred EEECChhhhccCCCCeeeee
Q 013904 376 IIDNSPQVFRLQLDNGIPIK 395 (434)
Q Consensus 376 IIDDsp~~~~~qp~NgI~I~ 395 (434)
.|-|...-...-...++-|.
T Consensus 430 ~vGDg~nD~~al~~A~vgia 449 (536)
T TIGR01512 430 MVGDGINDAPALAAADVGIA 449 (536)
T ss_pred EEeCCHHHHHHHHhCCEEEE
Confidence 99999886655545666444
No 154
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=79.47 E-value=1.5 Score=42.51 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=33.3
Q ss_pred CceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhhcCeE--EEEEcCCc
Q 013904 260 KRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVAEMFE--IIVFTASE 326 (434)
Q Consensus 260 kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~lsk~yE--IvI~Tas~ 326 (434)
|+..|+||+||||+-....+ -..+.-|.+.+.|+.|.+... |+|.|.-.
T Consensus 2 ~~~~l~lD~DGTL~~~~~~p------------------~~~~~~~~~~~~L~~L~~~~~~~v~ivSGR~ 52 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEIVPDP------------------DAAVVSDRLLTILQKLAARPHNAIWIISGRK 52 (244)
T ss_pred CcEEEEEecCccccCCcCCC------------------cccCCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 67889999999998542111 112346889999999987644 44566553
No 155
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=79.35 E-value=0.35 Score=46.98 Aligned_cols=64 Identities=16% Similarity=0.139 Sum_probs=40.3
Q ss_pred CCceEEEEeccccccccccc---cC------CCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchH
Q 013904 259 RKRVTLVLDLDETLVHSSTE---PC------DDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESV 328 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~~~---~~------~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~ 328 (434)
.++..+|||+|+||+..... .. ...++..- .. .. .-..=|+..+|++++. ++++|++-|.-...
T Consensus 70 ~~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~w--v~-~~---~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~ 143 (229)
T PF03767_consen 70 DKPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEW--VA-SG---KAPAIPGALELYNYARSRGVKVFFITGRPES 143 (229)
T ss_dssp TSEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHH--HH-CT---GGEEETTHHHHHHHHHHTTEEEEEEEEEETT
T ss_pred CCCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHH--Hh-cc---cCcccHHHHHHHHHHHHCCCeEEEEecCCch
Confidence 57889999999999965321 00 00111000 00 00 0145689999999999 78999999976544
No 156
>PLN02580 trehalose-phosphatase
Probab=79.06 E-value=3.4 Score=43.49 Aligned_cols=60 Identities=20% Similarity=0.273 Sum_probs=48.0
Q ss_pred CCceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhhcCeEEEEEcCCchHHHHHHHHH
Q 013904 259 RKRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVAEMFEIIVFTASESVYAEKLLDI 336 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~lsk~yEIvI~Tas~~~YA~~Il~~ 336 (434)
.++..|+||.||||.--... +-.+..-|.+.+-|+.+++.+.++|.|--...-++.++..
T Consensus 117 ~k~~~LfLDyDGTLaPIv~~------------------Pd~A~~s~~~~~aL~~La~~~~VAIVSGR~~~~L~~~l~~ 176 (384)
T PLN02580 117 GKKIALFLDYDGTLSPIVDD------------------PDRALMSDAMRSAVKNVAKYFPTAIISGRSRDKVYELVGL 176 (384)
T ss_pred cCCeEEEEecCCccCCCCCC------------------cccccCCHHHHHHHHHHhhCCCEEEEeCCCHHHHHHHhCC
Confidence 57789999999999743211 1234567899999999999899999999999988888764
No 157
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=78.96 E-value=0.77 Score=45.00 Aligned_cols=56 Identities=18% Similarity=0.371 Sum_probs=43.3
Q ss_pred EeecchHHHHHHHhhc--CeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceee
Q 013904 300 VRQRPFLRTFLERVAE--MFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFS 356 (434)
Q Consensus 300 V~lRP~l~eFL~~lsk--~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~ 356 (434)
+..-||..+.++.+++ .||+.|.|-+..-..+.+|.+.+... +|+.+++...|...
T Consensus 83 iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~d-~F~~IfTNPa~~da 140 (256)
T KOG3120|consen 83 IPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIHD-LFSEIFTNPACVDA 140 (256)
T ss_pred CCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHHH-HHHHHhcCCcccCC
Confidence 5568999999999983 48999999999999999999987654 56544444444433
No 158
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=78.78 E-value=3.3 Score=41.53 Aligned_cols=59 Identities=20% Similarity=0.248 Sum_probs=45.9
Q ss_pred CCceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhhcCeE--EEEEcCCchHHHHHHHH
Q 013904 259 RKRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVAEMFE--IIVFTASESVYAEKLLD 335 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~lsk~yE--IvI~Tas~~~YA~~Il~ 335 (434)
.++.+++||.||||.+-...+ .-...=+++.+.|+.|...+. ++|.|.-...-.+..+.
T Consensus 16 a~~~~~~lDyDGTl~~i~~~p------------------~~a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~~ 76 (266)
T COG1877 16 ARKRLLFLDYDGTLTEIVPHP------------------EAAVPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLFG 76 (266)
T ss_pred ccceEEEEeccccccccccCc------------------cccCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhcC
Confidence 678899999999998874322 223456788999999998877 88888888887777777
No 159
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=78.61 E-value=1.1 Score=41.74 Aligned_cols=16 Identities=38% Similarity=0.677 Sum_probs=14.0
Q ss_pred eEEEEecccccccccc
Q 013904 262 VTLVLDLDETLVHSST 277 (434)
Q Consensus 262 ~tLVLDLD~TLVhS~~ 277 (434)
++++|||||||+++..
T Consensus 3 ~~viFDlDGTL~ds~~ 18 (221)
T TIGR02253 3 KAIFFDLDDTLIDTSG 18 (221)
T ss_pred eEEEEeCCCCCcCCCC
Confidence 5799999999999853
No 160
>PRK11590 hypothetical protein; Provisional
Probab=77.69 E-value=1.3 Score=41.98 Aligned_cols=39 Identities=15% Similarity=0.102 Sum_probs=35.1
Q ss_pred EeecchHHHHH-HHhh-cCeEEEEEcCCchHHHHHHHHHhC
Q 013904 300 VRQRPFLRTFL-ERVA-EMFEIIVFTASESVYAEKLLDILD 338 (434)
Q Consensus 300 V~lRP~l~eFL-~~ls-k~yEIvI~Tas~~~YA~~Il~~LD 338 (434)
+..+|++.+.| +.+. +++.++|.|++.+.++++++..+.
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~ 134 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTP 134 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcc
Confidence 45689999999 5677 689999999999999999999977
No 161
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=77.53 E-value=5.7 Score=39.18 Aligned_cols=57 Identities=19% Similarity=0.117 Sum_probs=41.3
Q ss_pred ceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCC
Q 013904 261 RVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDP 339 (434)
Q Consensus 261 K~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP 339 (434)
.+++.+|||+|||....+..+ +...+.++. .+|+|+..|+-++.-...+-+.|+-
T Consensus 7 ~~lIFtDlD~TLl~~~ye~~p------------------------A~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v 62 (274)
T COG3769 7 PLLIFTDLDGTLLPHSYEWQP------------------------AAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGV 62 (274)
T ss_pred ceEEEEcccCcccCCCCCCCc------------------------cchHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Confidence 456677999999974333211 223455666 7899999999998888888888887
Q ss_pred CC
Q 013904 340 DR 341 (434)
Q Consensus 340 ~~ 341 (434)
.+
T Consensus 63 ~~ 64 (274)
T COG3769 63 QG 64 (274)
T ss_pred CC
Confidence 75
No 162
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=77.36 E-value=1.2 Score=41.26 Aligned_cols=15 Identities=20% Similarity=0.160 Sum_probs=13.1
Q ss_pred eEEEEeccccccccc
Q 013904 262 VTLVLDLDETLVHSS 276 (434)
Q Consensus 262 ~tLVLDLD~TLVhS~ 276 (434)
+.++|||||||+++.
T Consensus 1 k~viFDlDGTL~d~~ 15 (203)
T TIGR02252 1 KLITFDAVGTLLALK 15 (203)
T ss_pred CeEEEecCCceeeeC
Confidence 368999999999985
No 163
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=77.27 E-value=3.7 Score=46.32 Aligned_cols=61 Identities=26% Similarity=0.345 Sum_probs=45.3
Q ss_pred CCceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhhc--CeEEEEEcCCchHHHHHHHHH
Q 013904 259 RKRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVAE--MFEIIVFTASESVYAEKLLDI 336 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~lsk--~yEIvI~Tas~~~YA~~Il~~ 336 (434)
.++..+++|+||||+.....+ -....-|.+.+.|+.|.+ +..|+|.|.-.....+.++..
T Consensus 490 ~~~rLi~~D~DGTL~~~~~~~------------------~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~~ 551 (726)
T PRK14501 490 ASRRLLLLDYDGTLVPFAPDP------------------ELAVPDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFGD 551 (726)
T ss_pred ccceEEEEecCccccCCCCCc------------------ccCCCCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhCC
Confidence 567899999999999642111 011245788999999996 789999999998888777654
Q ss_pred h
Q 013904 337 L 337 (434)
Q Consensus 337 L 337 (434)
+
T Consensus 552 ~ 552 (726)
T PRK14501 552 L 552 (726)
T ss_pred C
Confidence 3
No 164
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=76.85 E-value=1.3 Score=42.56 Aligned_cols=17 Identities=35% Similarity=0.559 Sum_probs=14.5
Q ss_pred CceEEEEeccccccccc
Q 013904 260 KRVTLVLDLDETLVHSS 276 (434)
Q Consensus 260 kK~tLVLDLD~TLVhS~ 276 (434)
+.+.++|||||||+++.
T Consensus 9 ~~k~iiFDlDGTL~D~~ 25 (238)
T PRK10748 9 RISALTFDLDDTLYDNR 25 (238)
T ss_pred CceeEEEcCcccccCCh
Confidence 44689999999999984
No 165
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=76.12 E-value=3.7 Score=41.40 Aligned_cols=92 Identities=10% Similarity=0.061 Sum_probs=50.5
Q ss_pred CceEEEEeccccccccccc---cCCC-CCceeEEEec-ceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHH
Q 013904 260 KRVTLVLDLDETLVHSSTE---PCDD-ADFTFQVFFN-MKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKL 333 (434)
Q Consensus 260 kK~tLVLDLD~TLVhS~~~---~~~~-~d~~~~v~~~-~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~I 333 (434)
.+-.+|||+|||++....- +... ..|. ...+. .--..--...=|++.+|++++. .+++|++.|.-....-+.=
T Consensus 100 ~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~-~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT 178 (275)
T TIGR01680 100 EKDTFLFNIDGTALSNIPYYKKHGYGSEKFD-SELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVT 178 (275)
T ss_pred CCCEEEEECccccccCHHHHHHhcCCCCcCC-hhhhhHHHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHH
Confidence 4579999999999954321 1111 0110 00000 0000012334689999999998 7899999998876544444
Q ss_pred HHHhCCCCC-eeeEEEeccc
Q 013904 334 LDILDPDRM-LIARRAYRES 352 (434)
Q Consensus 334 l~~LDP~~~-~F~~rl~Re~ 352 (434)
++-|--.|- -..+.+.|..
T Consensus 179 ~~NL~kaGy~~~~~LiLR~~ 198 (275)
T TIGR01680 179 EANLKKAGYHTWEKLILKDP 198 (275)
T ss_pred HHHHHHcCCCCcceeeecCC
Confidence 444433341 0245555743
No 166
>PRK11590 hypothetical protein; Provisional
Probab=74.65 E-value=4.5 Score=38.21 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=14.1
Q ss_pred CceEEEEeccccccccc
Q 013904 260 KRVTLVLDLDETLVHSS 276 (434)
Q Consensus 260 kK~tLVLDLD~TLVhS~ 276 (434)
+++++||||||||++..
T Consensus 5 ~~k~~iFD~DGTL~~~d 21 (211)
T PRK11590 5 ERRVVFFDLDGTLHQQD 21 (211)
T ss_pred cceEEEEecCCCCcccc
Confidence 56699999999999553
No 167
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=73.79 E-value=1.7 Score=43.34 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=15.7
Q ss_pred CCceEEEEeccccccccc
Q 013904 259 RKRVTLVLDLDETLVHSS 276 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~ 276 (434)
.+.+.+||||||||+++.
T Consensus 38 ~~~k~VIFDlDGTLvDS~ 55 (286)
T PLN02779 38 ALPEALLFDCDGVLVETE 55 (286)
T ss_pred cCCcEEEEeCceeEEccc
Confidence 455789999999999997
No 168
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=73.65 E-value=1.4 Score=39.81 Aligned_cols=15 Identities=20% Similarity=0.574 Sum_probs=13.1
Q ss_pred EEEEecccccccccc
Q 013904 263 TLVLDLDETLVHSST 277 (434)
Q Consensus 263 tLVLDLD~TLVhS~~ 277 (434)
.+|||+||||+++..
T Consensus 1 ~iiFD~DGTL~ds~~ 15 (185)
T TIGR01990 1 AVIFDLDGVITDTAE 15 (185)
T ss_pred CeEEcCCCccccChH
Confidence 379999999999974
No 169
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=72.63 E-value=4.9 Score=36.29 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=38.4
Q ss_pred ecchHH----HHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCC-CeeeEEE
Q 013904 302 QRPFLR----TFLERVA-EMFEIIVFTASESVYAEKLLDILDPDR-MLIARRA 348 (434)
Q Consensus 302 lRP~l~----eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~-~~F~~rl 348 (434)
++|++. +||+.+. +.++++|-|++...+++.+++.++... ..+...+
T Consensus 86 ~~~~~~~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~ 138 (192)
T PF12710_consen 86 LFPGFIPDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNEL 138 (192)
T ss_dssp HCTTCHTTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEE
T ss_pred cCcCchhhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEee
Confidence 357777 9999986 899999999999999999999888654 2445555
No 170
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=71.95 E-value=1.8 Score=38.92 Aligned_cols=13 Identities=38% Similarity=0.519 Sum_probs=12.0
Q ss_pred EEEeccccccccc
Q 013904 264 LVLDLDETLVHSS 276 (434)
Q Consensus 264 LVLDLD~TLVhS~ 276 (434)
++|||||||+++.
T Consensus 2 viFD~DGTL~D~~ 14 (175)
T TIGR01493 2 MVFDVYGTLVDVH 14 (175)
T ss_pred eEEecCCcCcccH
Confidence 7999999999986
No 171
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=71.63 E-value=1.9 Score=40.02 Aligned_cols=16 Identities=38% Similarity=0.630 Sum_probs=13.9
Q ss_pred eEEEEecccccccccc
Q 013904 262 VTLVLDLDETLVHSST 277 (434)
Q Consensus 262 ~tLVLDLD~TLVhS~~ 277 (434)
+.++||+||||+++..
T Consensus 2 k~viFD~DGTL~d~~~ 17 (224)
T TIGR02254 2 KTLLFDLDDTILDFQA 17 (224)
T ss_pred CEEEEcCcCcccccch
Confidence 5799999999999854
No 172
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=71.45 E-value=2 Score=39.59 Aligned_cols=15 Identities=33% Similarity=0.379 Sum_probs=13.3
Q ss_pred eEEEEeccccccccc
Q 013904 262 VTLVLDLDETLVHSS 276 (434)
Q Consensus 262 ~tLVLDLD~TLVhS~ 276 (434)
+.++||+||||+++.
T Consensus 2 k~viFD~dgTLiD~~ 16 (198)
T TIGR01428 2 KALVFDVYGTLFDVH 16 (198)
T ss_pred cEEEEeCCCcCccHH
Confidence 478999999999985
No 173
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=70.33 E-value=2.4 Score=39.46 Aligned_cols=15 Identities=20% Similarity=0.426 Sum_probs=13.3
Q ss_pred eEEEEeccccccccc
Q 013904 262 VTLVLDLDETLVHSS 276 (434)
Q Consensus 262 ~tLVLDLD~TLVhS~ 276 (434)
+++||||||||+++.
T Consensus 3 k~viFDldGtL~d~~ 17 (211)
T TIGR02247 3 KAVIFDFGGVLLPSP 17 (211)
T ss_pred eEEEEecCCceecCH
Confidence 589999999999974
No 174
>PRK09449 dUMP phosphatase; Provisional
Probab=70.27 E-value=2.3 Score=39.95 Aligned_cols=15 Identities=40% Similarity=0.445 Sum_probs=13.0
Q ss_pred ceEEEEecccccccc
Q 013904 261 RVTLVLDLDETLVHS 275 (434)
Q Consensus 261 K~tLVLDLD~TLVhS 275 (434)
.++++|||||||++.
T Consensus 3 ~k~iiFDlDGTLid~ 17 (224)
T PRK09449 3 YDWILFDADETLFHF 17 (224)
T ss_pred ccEEEEcCCCchhcc
Confidence 468999999999974
No 175
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=69.93 E-value=2.8 Score=38.23 Aligned_cols=16 Identities=31% Similarity=0.410 Sum_probs=13.5
Q ss_pred ceEEEEeccccccccc
Q 013904 261 RVTLVLDLDETLVHSS 276 (434)
Q Consensus 261 K~tLVLDLD~TLVhS~ 276 (434)
.+++|||+||||+++.
T Consensus 4 ~k~viFD~DGTLid~~ 19 (201)
T TIGR01491 4 IKLIIFDLDGTLTDVM 19 (201)
T ss_pred ceEEEEeCCCCCcCCc
Confidence 4589999999999863
No 176
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=69.89 E-value=7.7 Score=37.88 Aligned_cols=55 Identities=22% Similarity=0.196 Sum_probs=37.1
Q ss_pred CceEEEEecccccc-ccccccCCCCCceeEEEecceeceeEEeecchHHHHHH-HhhcCeEEEEEcCCchHHHHHHHHHh
Q 013904 260 KRVTLVLDLDETLV-HSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLE-RVAEMFEIIVFTASESVYAEKLLDIL 337 (434)
Q Consensus 260 kK~tLVLDLD~TLV-hS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~-~lsk~yEIvI~Tas~~~YA~~Il~~L 337 (434)
+++.|+.||||||+ ... .-+.-+.++|+ ......-+++-|.....-+..++...
T Consensus 1 ~~~ll~sDlD~Tl~~~~~------------------------~~~~~l~~~l~~~~~~~~~~v~~TGRs~~~~~~~~~~~ 56 (247)
T PF05116_consen 1 PPRLLASDLDGTLIDGDD------------------------EALARLEELLEQQARPEILFVYVTGRSLESVLRLLREY 56 (247)
T ss_dssp -SEEEEEETBTTTBHCHH------------------------HHHHHHHHHHHHHHCCGEEEEEE-SS-HHHHHHHHHHC
T ss_pred CCEEEEEECCCCCcCCCH------------------------HHHHHHHHHHHHhhCCCceEEEECCCCHHHHHHHHHhC
Confidence 36789999999999 110 02345566666 33466888888888888899988875
Q ss_pred C
Q 013904 338 D 338 (434)
Q Consensus 338 D 338 (434)
.
T Consensus 57 ~ 57 (247)
T PF05116_consen 57 N 57 (247)
T ss_dssp T
T ss_pred C
Confidence 4
No 177
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=69.30 E-value=11 Score=35.98 Aligned_cols=38 Identities=18% Similarity=0.108 Sum_probs=34.0
Q ss_pred EeecchHHHHHH-Hhh-cCeEEEEEcCCchHHHHHHHHHh
Q 013904 300 VRQRPFLRTFLE-RVA-EMFEIIVFTASESVYAEKLLDIL 337 (434)
Q Consensus 300 V~lRP~l~eFL~-~ls-k~yEIvI~Tas~~~YA~~Il~~L 337 (434)
+.++|++.+.|+ .+. ++..|+|.|++...|++++++.+
T Consensus 93 ~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~ 132 (210)
T TIGR01545 93 VTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDS 132 (210)
T ss_pred CCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhc
Confidence 357999999995 788 69999999999999999999874
No 178
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=68.95 E-value=11 Score=37.16 Aligned_cols=53 Identities=15% Similarity=0.267 Sum_probs=44.0
Q ss_pred EEeecchHHHHHHHhh---cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEeccc
Q 013904 299 YVRQRPFLRTFLERVA---EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRES 352 (434)
Q Consensus 299 ~V~lRP~l~eFL~~ls---k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~ 352 (434)
.+...||..+|+++++ ..++++|-|-+..-|.+.||++-+... .|+.+++...
T Consensus 69 ~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~-~f~~I~TNpa 124 (234)
T PF06888_consen 69 SIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRD-CFSEIFTNPA 124 (234)
T ss_pred cCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCcc-ccceEEeCCc
Confidence 4678999999999994 489999999999999999999988765 5666555433
No 179
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=66.00 E-value=16 Score=33.87 Aligned_cols=62 Identities=21% Similarity=0.221 Sum_probs=41.4
Q ss_pred EEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHh
Q 013904 264 LVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDIL 337 (434)
Q Consensus 264 LVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~L 337 (434)
+|.|+||||.-|-... ...++ -++ -+.+||+.++...+. ++|.++=-|+-.--.|...-+.|
T Consensus 2 VvsDIDGTiT~SD~~G-----~i~~~--~G~-----d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L 64 (157)
T PF08235_consen 2 VVSDIDGTITKSDVLG-----HILPI--LGK-----DWTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWL 64 (157)
T ss_pred EEEeccCCcCccchhh-----hhhhc--cCc-----hhhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHH
Confidence 6789999998773210 00000 011 157999999999999 78998888887766666554444
No 180
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=64.53 E-value=3.3 Score=36.08 Aligned_cols=14 Identities=43% Similarity=0.783 Sum_probs=12.2
Q ss_pred EEEecccccccccc
Q 013904 264 LVLDLDETLVHSST 277 (434)
Q Consensus 264 LVLDLD~TLVhS~~ 277 (434)
++||+||||+++..
T Consensus 1 iifD~dgtL~d~~~ 14 (176)
T PF13419_consen 1 IIFDLDGTLVDTDP 14 (176)
T ss_dssp EEEESBTTTEEHHH
T ss_pred cEEECCCCcEeCHH
Confidence 68999999999854
No 181
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=64.15 E-value=3 Score=37.27 Aligned_cols=15 Identities=40% Similarity=0.729 Sum_probs=12.8
Q ss_pred EEEEecccccccccc
Q 013904 263 TLVLDLDETLVHSST 277 (434)
Q Consensus 263 tLVLDLD~TLVhS~~ 277 (434)
.++|||||||+++..
T Consensus 1 ~vlFDlDgtLv~~~~ 15 (183)
T TIGR01509 1 AILFDLDGVLVDTSS 15 (183)
T ss_pred CeeeccCCceechHH
Confidence 379999999999954
No 182
>PLN02382 probable sucrose-phosphatase
Probab=63.46 E-value=19 Score=38.19 Aligned_cols=17 Identities=41% Similarity=0.626 Sum_probs=14.6
Q ss_pred CCceEEEEecccccccc
Q 013904 259 RKRVTLVLDLDETLVHS 275 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS 275 (434)
.+++.|+.||||||+..
T Consensus 7 ~~~~lI~sDLDGTLL~~ 23 (413)
T PLN02382 7 SPRLMIVSDLDHTMVDH 23 (413)
T ss_pred CCCEEEEEcCCCcCcCC
Confidence 56788999999999965
No 183
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=61.82 E-value=14 Score=36.82 Aligned_cols=100 Identities=13% Similarity=0.183 Sum_probs=57.7
Q ss_pred EEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhC---CCCCeeeEEEecccce----eeCC---ccccccccc
Q 013904 299 YVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILD---PDRMLIARRAYRESCI----FSDG---SYAKDLTIL 367 (434)
Q Consensus 299 ~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LD---P~~~~F~~rl~Re~c~----~~~g---~y~KDL~~L 367 (434)
.+.+|.|+.+|++.|. ..--+.|||||--...+.++..-. |.=+.+++.+.-+... +... .|.|+-..+
T Consensus 88 ~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~~NKn~~~l 167 (246)
T PF05822_consen 88 DIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAGVFHPNVKVVSNFMDFDEDGVLVGFKGPLIHTFNKNESAL 167 (246)
T ss_dssp ---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT--BTTEEEEEE-EEE-TTSBEEEE-SS---TT-HHHHHH
T ss_pred chhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcCCCCCCeEEEeeeEEECCcceEeecCCCceEEeeCCcccc
Confidence 4789999999999999 558999999999999999999753 2224556665533211 1111 344554433
Q ss_pred --------CCCCCcEEEEECChhhhcc-----CCCCeeeeeeec
Q 013904 368 --------GVDLARIAIIDNSPQVFRL-----QLDNGIPIKSWF 398 (434)
Q Consensus 368 --------grdl~~vIIIDDsp~~~~~-----qp~NgI~I~~f~ 398 (434)
-....|||++=|+..-... ..+|.|.|--..
T Consensus 168 ~~~~~~~~~~~R~NvlLlGDslgD~~Ma~G~~~~~~~lkIGFLn 211 (246)
T PF05822_consen 168 EDSPYFKQLKKRTNVLLLGDSLGDLHMADGVPDEENVLKIGFLN 211 (246)
T ss_dssp TTHHHHHCTTT--EEEEEESSSGGGGTTTT-S--SEEEEEEEE-
T ss_pred cCchHHHHhccCCcEEEecCccCChHhhcCCCccccEEEEEecc
Confidence 2356899999999875532 335555554333
No 184
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=56.02 E-value=21 Score=41.50 Aligned_cols=59 Identities=12% Similarity=0.095 Sum_probs=41.9
Q ss_pred CCceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh--cCeEEEEEcCCchHHHHHHHHH
Q 013904 259 RKRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA--EMFEIIVFTASESVYAEKLLDI 336 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls--k~yEIvI~Tas~~~YA~~Il~~ 336 (434)
.++..|+||+||||+..... -...-|.+.+-|+.|. +...++|.|.-...-.+.++..
T Consensus 594 ~~~rlI~LDyDGTLlp~~~~--------------------~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f~~ 653 (854)
T PLN02205 594 TTTRAILLDYDGTLMPQASI--------------------DKSPSSKSIDILNTLCRDKNNMVFIVSARSRKTLADWFSP 653 (854)
T ss_pred hcCeEEEEecCCcccCCccc--------------------cCCCCHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHhCC
Confidence 46788999999999954210 0123468888888874 5678888888888777777654
Q ss_pred h
Q 013904 337 L 337 (434)
Q Consensus 337 L 337 (434)
+
T Consensus 654 ~ 654 (854)
T PLN02205 654 C 654 (854)
T ss_pred C
Confidence 4
No 185
>PRK10671 copA copper exporting ATPase; Provisional
Probab=54.23 E-value=13 Score=42.76 Aligned_cols=85 Identities=14% Similarity=0.148 Sum_probs=62.8
Q ss_pred eecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEecccceeeCCcccccccccCCCCCcEEEEEC
Q 013904 301 RQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAYRESCIFSDGSYAKDLTILGVDLARIAIIDN 379 (434)
Q Consensus 301 ~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g~y~KDL~~Lgrdl~~vIIIDD 379 (434)
..||++.+.|+.+. +++++++.|...+..|+.+++.++... +|.... -+ ...+-++.++...++|+.|-|
T Consensus 650 ~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~~-~~~~~~-p~-------~K~~~i~~l~~~~~~v~~vGD 720 (834)
T PRK10671 650 PLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGIDE-VIAGVL-PD-------GKAEAIKRLQSQGRQVAMVGD 720 (834)
T ss_pred cchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCE-EEeCCC-HH-------HHHHHHHHHhhcCCEEEEEeC
Confidence 56999999999998 689999999999999999999998864 333211 10 123344445566778999999
Q ss_pred ChhhhccCCCCeeee
Q 013904 380 SPQVFRLQLDNGIPI 394 (434)
Q Consensus 380 sp~~~~~qp~NgI~I 394 (434)
...-...-...++-|
T Consensus 721 g~nD~~al~~Agvgi 735 (834)
T PRK10671 721 GINDAPALAQADVGI 735 (834)
T ss_pred CHHHHHHHHhCCeeE
Confidence 988765555566655
No 186
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=53.61 E-value=50 Score=29.99 Aligned_cols=119 Identities=14% Similarity=0.051 Sum_probs=69.6
Q ss_pred CceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCC-chHHHHHHHHHh
Q 013904 260 KRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTAS-ESVYAEKLLDIL 337 (434)
Q Consensus 260 kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas-~~~YA~~Il~~L 337 (434)
+..+.+||||-||.-.-.....+..|. +.+-..+.++.....=|.....|..|+ ++.++++.+.+ .+++|.+.|+.+
T Consensus 4 ~p~~~~fdldytiwP~~vdthl~~pfk-P~k~~~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~f 82 (144)
T KOG4549|consen 4 KPEAMQFDLDYTIWPRLVDTHLDYPFK-PFKCECGSKGEEMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETF 82 (144)
T ss_pred CCceeEEeccceeeeEEEEeccccccc-ccccCcccCcceeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHh
Confidence 456788888888865432211111111 111222344455556688888999999 78999999988 579999999987
Q ss_pred CCCC--------CeeeEEEecccceeeCCcccccccc-cCCCCCcEEEEECChh
Q 013904 338 DPDR--------MLIARRAYRESCIFSDGSYAKDLTI-LGVDLARIAIIDNSPQ 382 (434)
Q Consensus 338 DP~~--------~~F~~rl~Re~c~~~~g~y~KDL~~-Lgrdl~~vIIIDDsp~ 382 (434)
-... ..|.....-+- ++-.+.|++.- -+...++.++.||...
T Consensus 83 kvk~~Gvlkps~e~ft~~~~g~g---sklghfke~~n~s~~~~k~~~~fdDesr 133 (144)
T KOG4549|consen 83 KVKQTGVLKPSLEEFTFEAVGDG---SKLGHFKEFTNNSNSIEKNKQVFDDESR 133 (144)
T ss_pred ccCcccccchhhhcCceeeecCc---ccchhHHHHhhccCcchhceeeeccccc
Confidence 6442 12222222111 01122355543 2566778888888653
No 187
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=49.12 E-value=9.3 Score=35.42 Aligned_cols=14 Identities=21% Similarity=0.449 Sum_probs=12.5
Q ss_pred EEEEeccccccccc
Q 013904 263 TLVLDLDETLVHSS 276 (434)
Q Consensus 263 tLVLDLD~TLVhS~ 276 (434)
++||||||||++..
T Consensus 2 ~viFDldgvL~d~~ 15 (199)
T PRK09456 2 LYIFDLGNVIVDID 15 (199)
T ss_pred EEEEeCCCccccCc
Confidence 68999999999974
No 188
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=49.02 E-value=10 Score=35.27 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=14.4
Q ss_pred CceEEEEeccccccccc
Q 013904 260 KRVTLVLDLDETLVHSS 276 (434)
Q Consensus 260 kK~tLVLDLD~TLVhS~ 276 (434)
..+.++||+||||++..
T Consensus 3 ~~k~i~FD~d~TL~d~~ 19 (229)
T COG1011 3 MIKAILFDLDGTLLDFD 19 (229)
T ss_pred ceeEEEEecCCcccccc
Confidence 45789999999999974
No 189
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=47.51 E-value=33 Score=39.50 Aligned_cols=63 Identities=16% Similarity=0.191 Sum_probs=45.0
Q ss_pred CCceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhhc--CeEEEEEcCCchHHHHHHHHH
Q 013904 259 RKRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVAE--MFEIIVFTASESVYAEKLLDI 336 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~lsk--~yEIvI~Tas~~~YA~~Il~~ 336 (434)
.++..|+||.||||+.....+. ...-+..-|.+.+-|+.|.+ .-.|+|-|.-...-.+.++..
T Consensus 505 a~~rll~LDyDGTL~~~~~~~~---------------~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~~ 569 (797)
T PLN03063 505 SNNRLLILGFYGTLTEPRNSQI---------------KEMDLGLHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFGE 569 (797)
T ss_pred ccCeEEEEecCccccCCCCCcc---------------ccccCCCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhCC
Confidence 4678899999999985321110 11223456889999999984 578999998888888877764
No 190
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=47.50 E-value=21 Score=34.32 Aligned_cols=95 Identities=17% Similarity=0.155 Sum_probs=67.1
Q ss_pred EeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHH----HhCCCCCeeeEEEecccceee-CCcccccccccCCCCCc
Q 013904 300 VRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLD----ILDPDRMLIARRAYRESCIFS-DGSYAKDLTILGVDLAR 373 (434)
Q Consensus 300 V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~----~LDP~~~~F~~rl~Re~c~~~-~g~y~KDL~~Lgrdl~~ 373 (434)
-.+-|.+.+++++-. .+..|+|||+|+-. |+++.- ..|..+ ||+..+-...-... .+.|.|-+.-+|..+..
T Consensus 102 ahlypDav~~ik~wk~~g~~vyiYSSGSV~-AQkL~Fghs~agdL~~-lfsGyfDttiG~KrE~~SY~kIa~~iGl~p~e 179 (229)
T COG4229 102 AHLYPDAVQAIKRWKALGMRVYIYSSGSVK-AQKLFFGHSDAGDLNS-LFSGYFDTTIGKKRESQSYAKIAGDIGLPPAE 179 (229)
T ss_pred cccCHhHHHHHHHHHHcCCcEEEEcCCCch-hHHHhhcccccccHHh-hhcceeeccccccccchhHHHHHHhcCCCchh
Confidence 345699999999988 78999999999754 333332 344443 66665543221111 24788999999999999
Q ss_pred EEEEECChhhhccCCCCeeeeee
Q 013904 374 IAIIDNSPQVFRLQLDNGIPIKS 396 (434)
Q Consensus 374 vIIIDDsp~~~~~qp~NgI~I~~ 396 (434)
++++-|.+.-...+.+-|+...-
T Consensus 180 ilFLSDn~~EL~AA~~vGl~t~l 202 (229)
T COG4229 180 ILFLSDNPEELKAAAGVGLATGL 202 (229)
T ss_pred eEEecCCHHHHHHHHhcchheee
Confidence 99999999988777666665543
No 191
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=47.31 E-value=10 Score=36.16 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=13.8
Q ss_pred ceEEEEeccccccccc
Q 013904 261 RVTLVLDLDETLVHSS 276 (434)
Q Consensus 261 K~tLVLDLD~TLVhS~ 276 (434)
++..+||+||||++.-
T Consensus 5 ~~la~FDfDgTLt~~d 20 (210)
T TIGR01545 5 KRIIFFDLDGTLHQQD 20 (210)
T ss_pred CcEEEEcCCCCCccCc
Confidence 5678999999999873
No 192
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=46.77 E-value=34 Score=36.89 Aligned_cols=53 Identities=25% Similarity=0.347 Sum_probs=41.3
Q ss_pred eeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHh-CC-------CCCeeeEEEe
Q 013904 297 TVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDIL-DP-------DRMLIARRAY 349 (434)
Q Consensus 297 ~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~L-DP-------~~~~F~~rl~ 349 (434)
.-|+.+-|.+..+|+.+. .+-.+.+-|+|...|++.+++.+ ++ ++.||+-++.
T Consensus 179 ~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv 240 (448)
T PF05761_consen 179 EKYIHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFDVVIV 240 (448)
T ss_dssp CCCEE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCECEEEE
T ss_pred HHHccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhheeEEEE
Confidence 456777999999999999 45689999999999999999975 55 6789988887
No 193
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=43.03 E-value=23 Score=33.87 Aligned_cols=51 Identities=22% Similarity=0.219 Sum_probs=30.5
Q ss_pred EEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhhcCeE--EEEEcCCchHHHHHH
Q 013904 265 VLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVAEMFE--IIVFTASESVYAEKL 333 (434)
Q Consensus 265 VLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~lsk~yE--IvI~Tas~~~YA~~I 333 (434)
.||.||||.-.... ....+.-|.+.+.|+.|++... |+|.|.-.....+..
T Consensus 1 ~lDyDGTL~p~~~~------------------p~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~~~~~ 53 (235)
T PF02358_consen 1 FLDYDGTLAPIVDD------------------PDAAVPPPELRELLRALAADPNNTVAIVSGRSLDDLERF 53 (235)
T ss_dssp EEE-TTTSS---S-------------------GGG----HHHHHHHHHHHHHSE--EEEE-SS-HHHHHHH
T ss_pred CcccCCccCCCCCC------------------ccccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHHhHHh
Confidence 58999999755322 1234567999999999997666 888888877774444
No 194
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=39.37 E-value=47 Score=35.31 Aligned_cols=57 Identities=14% Similarity=0.225 Sum_probs=35.6
Q ss_pred CCceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCc
Q 013904 259 RKRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASE 326 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~ 326 (434)
...+.+.||||||||.+.... .+....+.+.+-.++.... |+.++ ++|.++|+|...
T Consensus 73 ~~~K~i~FD~dgtlI~t~sg~----------vf~~~~~dw~~l~~~vp~K-lktl~~~g~~l~iftnq~ 130 (422)
T KOG2134|consen 73 GGSKIIMFDYDGTLIDTKSGK----------VFPKGSMDWRILFPEVPSK-LKTLYQDGIKLFIFTNQN 130 (422)
T ss_pred CCcceEEEecCCceeecCCcc----------eeeccCccceeeccccchh-hhhhccCCeEEEEEeccc
Confidence 456788999999999985321 1111223333434444444 45555 789999999765
No 195
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=38.37 E-value=63 Score=38.03 Aligned_cols=70 Identities=19% Similarity=0.270 Sum_probs=48.1
Q ss_pred CCceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhhc--CeEEEEEcCCchHHHHHHHHH
Q 013904 259 RKRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVAE--MFEIIVFTASESVYAEKLLDI 336 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~lsk--~yEIvI~Tas~~~YA~~Il~~ 336 (434)
.++..|+||.||||+.....+...... .....+..-|.+.+.|+.|.+ ...|+|.|.-.+.-.+.++..
T Consensus 589 a~~RLlfLDyDGTLap~~~~P~~~~~~---------~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~fg~ 659 (934)
T PLN03064 589 SNNRLLILGFNATLTEPVDTPGRRGDQ---------IKEMELRLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENFGE 659 (934)
T ss_pred ccceEEEEecCceeccCCCCccccccc---------ccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhCC
Confidence 467889999999998653222100000 001123455889999999994 588999999999998888866
Q ss_pred h
Q 013904 337 L 337 (434)
Q Consensus 337 L 337 (434)
+
T Consensus 660 ~ 660 (934)
T PLN03064 660 F 660 (934)
T ss_pred C
Confidence 5
No 196
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=38.33 E-value=4 Score=39.35 Aligned_cols=90 Identities=7% Similarity=-0.058 Sum_probs=59.9
Q ss_pred cchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEE--EecccceeeCC---cccccccccCC-CCCcEE
Q 013904 303 RPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARR--AYRESCIFSDG---SYAKDLTILGV-DLARIA 375 (434)
Q Consensus 303 RP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~r--l~Re~c~~~~g---~y~KDL~~Lgr-dl~~vI 375 (434)
-|++.+.|+.+. +...+ |.|+....|+...+..++... +|... ..++.....|+ .|.+.+++++. +.++++
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~~~g~-~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~ 217 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGIYRYGAGY-YAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKNRML 217 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEecccH-HHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcccEE
Confidence 489999999876 56666 779999999987777766543 44422 22333223343 45667777875 467899
Q ss_pred EEECCh-hhhccCCCCeeee
Q 013904 376 IIDNSP-QVFRLQLDNGIPI 394 (434)
Q Consensus 376 IIDDsp-~~~~~qp~NgI~I 394 (434)
+|.|+. .-+.....+|+..
T Consensus 218 ~vGD~~~~Di~~a~~~G~~~ 237 (242)
T TIGR01459 218 MVGDSFYTDILGANRLGIDT 237 (242)
T ss_pred EECCCcHHHHHHHHHCCCeE
Confidence 999994 5565555677654
No 197
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=35.74 E-value=17 Score=32.40 Aligned_cols=13 Identities=31% Similarity=0.572 Sum_probs=11.1
Q ss_pred EEEeccccccccc
Q 013904 264 LVLDLDETLVHSS 276 (434)
Q Consensus 264 LVLDLD~TLVhS~ 276 (434)
++||+||||+...
T Consensus 2 ~~fD~DgTl~~~~ 14 (177)
T TIGR01488 2 AIFDFDGTLTRQD 14 (177)
T ss_pred EEecCccccccch
Confidence 6899999999763
No 198
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=35.36 E-value=21 Score=32.14 Aligned_cols=13 Identities=38% Similarity=0.695 Sum_probs=11.4
Q ss_pred EEEeccccccccc
Q 013904 264 LVLDLDETLVHSS 276 (434)
Q Consensus 264 LVLDLD~TLVhS~ 276 (434)
++||+||||+...
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 5899999999875
No 199
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=35.06 E-value=3.9 Score=40.07 Aligned_cols=94 Identities=12% Similarity=0.100 Sum_probs=60.8
Q ss_pred chHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCCCeeeEEEe---cccceeeCC---cccccccccCCCCCcEEE
Q 013904 304 PFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDRMLIARRAY---RESCIFSDG---SYAKDLTILGVDLARIAI 376 (434)
Q Consensus 304 P~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~~~F~~rl~---Re~c~~~~g---~y~KDL~~Lgrdl~~vII 376 (434)
|++.+-++.+. ..+.++|.|+..+.++...+..++... +|..... ++.....|+ .|.+.+++++.+++++++
T Consensus 123 ~~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~~~~g~g~-~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~~ 201 (257)
T TIGR01458 123 QILNQAFRLLLDGAKPLLIAIGKGRYYKRKDGLALDVGP-FVTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEAVM 201 (257)
T ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCcCCCCCCCCchH-HHHHHHHHhCCCceeecCCCHHHHHHHHHHhCCChhhEEE
Confidence 56777777776 568889999888877765555554432 4432221 121122233 556777788999999999
Q ss_pred EECCh-hhhccCCCCeeeeeeec
Q 013904 377 IDNSP-QVFRLQLDNGIPIKSWF 398 (434)
Q Consensus 377 IDDsp-~~~~~qp~NgI~I~~f~ 398 (434)
|.|+. .-......+|+...-..
T Consensus 202 vGD~~~~Di~~a~~~G~~~i~v~ 224 (257)
T TIGR01458 202 IGDDCRDDVGGAQDCGMRGIQVR 224 (257)
T ss_pred ECCCcHHHHHHHHHcCCeEEEEC
Confidence 99986 55666667777766553
No 200
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=34.50 E-value=48 Score=32.64 Aligned_cols=103 Identities=17% Similarity=0.170 Sum_probs=63.3
Q ss_pred CceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhC
Q 013904 260 KRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILD 338 (434)
Q Consensus 260 kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LD 338 (434)
.-+.+.|||-|||-.+. ..-|+..|-|++|. ++-.|-..|...++--..+..+|.
T Consensus 6 ~v~gvLlDlSGtLh~e~------------------------~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~ 61 (262)
T KOG3040|consen 6 AVKGVLLDLSGTLHIED------------------------AAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQ 61 (262)
T ss_pred ccceEEEeccceEeccc------------------------ccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHH
Confidence 44578899999995541 25799999999999 999999999988766666665553
Q ss_pred CCC----------------CeeeEEEecccceeeCCcccccccccCCCCCcEEEEECChhhhccC
Q 013904 339 PDR----------------MLIARRAYRESCIFSDGSYAKDLTILGVDLARIAIIDNSPQVFRLQ 387 (434)
Q Consensus 339 P~~----------------~~F~~rl~Re~c~~~~g~y~KDL~~Lgrdl~~vIIIDDsp~~~~~q 387 (434)
.-+ .|+..+-+|.+-... ..-..|..-+..+--|+|+|-..|..|.++
T Consensus 62 rlgf~v~eeei~tsl~aa~~~~~~~~lrP~l~v~-d~a~~dF~gidTs~pn~VViglape~F~y~ 125 (262)
T KOG3040|consen 62 RLGFDVSEEEIFTSLPAARQYLEENQLRPYLIVD-DDALEDFDGIDTSDPNCVVIGLAPEGFSYQ 125 (262)
T ss_pred HhCCCccHHHhcCccHHHHHHHHhcCCCceEEEc-ccchhhCCCccCCCCCeEEEecCcccccHH
Confidence 322 011111111111100 011233444445566888888888888554
No 201
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=34.23 E-value=1e+02 Score=30.11 Aligned_cols=86 Identities=10% Similarity=0.146 Sum_probs=58.9
Q ss_pred EeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHhCCCC-CeeeEEEe-cccceee----------CCcc---ccc
Q 013904 300 VRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDILDPDR-MLIARRAY-RESCIFS----------DGSY---AKD 363 (434)
Q Consensus 300 V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~LDP~~-~~F~~rl~-Re~c~~~----------~g~y---~KD 363 (434)
..+-||++||-.+|. +...|++.|-|-+..+++|.+.|+... ..+.+++. -.+-.+. .|.. ++-
T Consensus 87 ~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~i~~ 166 (227)
T KOG1615|consen 87 PTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEVIAL 166 (227)
T ss_pred CccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHHHHHH
Confidence 346799999999999 789999999999999999999999764 23344333 2211111 0111 233
Q ss_pred ccccCCCCCcEEEEECChhhhcc
Q 013904 364 LTILGVDLARIAIIDNSPQVFRL 386 (434)
Q Consensus 364 L~~Lgrdl~~vIIIDDsp~~~~~ 386 (434)
|++ +.+.+.++.|-|-..-...
T Consensus 167 lrk-~~~~~~~~mvGDGatDlea 188 (227)
T KOG1615|consen 167 LRK-NYNYKTIVMVGDGATDLEA 188 (227)
T ss_pred HHh-CCChheeEEecCCcccccc
Confidence 333 7788888888887665543
No 202
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=33.75 E-value=20 Score=32.93 Aligned_cols=12 Identities=33% Similarity=0.481 Sum_probs=10.8
Q ss_pred EEEecccccccc
Q 013904 264 LVLDLDETLVHS 275 (434)
Q Consensus 264 LVLDLD~TLVhS 275 (434)
.+||+||||+..
T Consensus 2 a~FD~DgTL~~~ 13 (202)
T TIGR01490 2 AFFDFDGTLTAK 13 (202)
T ss_pred eEEccCCCCCCC
Confidence 689999999986
No 203
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=32.44 E-value=79 Score=28.70 Aligned_cols=64 Identities=20% Similarity=0.196 Sum_probs=40.8
Q ss_pred eecchHHHHHHHhh-cCeEEEEEcCCchH-HHHHHHHHhCCCCCeeeEEEecccceeeCCcccccccccCCCCCcEEEEE
Q 013904 301 RQRPFLRTFLERVA-EMFEIIVFTASESV-YAEKLLDILDPDRMLIARRAYRESCIFSDGSYAKDLTILGVDLARIAIID 378 (434)
Q Consensus 301 ~lRP~l~eFL~~ls-k~yEIvI~Tas~~~-YA~~Il~~LDP~~~~F~~rl~Re~c~~~~g~y~KDL~~Lgrdl~~vIIID 378 (434)
..++++.++++.++ ..+.+.|+|.+... --+.++..+|-- ..|.|+.+++.++..-+|=.|+|
T Consensus 72 l~~~~l~~ll~~lk~~Gl~i~l~Tg~~~~~~~~~il~~iD~l---------------~~g~y~~~~~~~~~~~sNQ~~~~ 136 (147)
T TIGR02826 72 WNREALLSLLKIFKEKGLKTCLYTGLEPKDIPLELVQHLDYL---------------KTGRWIHTRGGLGSPTTNQIFID 136 (147)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHhCCEE---------------EEChHHHHcCCCCCCCcCceEEE
Confidence 36789999999999 56999999986542 334455554431 23455555555544345667776
Q ss_pred C
Q 013904 379 N 379 (434)
Q Consensus 379 D 379 (434)
-
T Consensus 137 ~ 137 (147)
T TIGR02826 137 L 137 (147)
T ss_pred C
Confidence 3
No 204
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=27.66 E-value=35 Score=31.06 Aligned_cols=15 Identities=20% Similarity=0.279 Sum_probs=12.6
Q ss_pred eEEEEeccccccccc
Q 013904 262 VTLVLDLDETLVHSS 276 (434)
Q Consensus 262 ~tLVLDLD~TLVhS~ 276 (434)
.+++||.||||....
T Consensus 2 ~~i~fDktGTLt~~~ 16 (215)
T PF00702_consen 2 DAICFDKTGTLTQGK 16 (215)
T ss_dssp SEEEEECCTTTBESH
T ss_pred eEEEEecCCCcccCe
Confidence 479999999997764
No 205
>PF15386 Tantalus: Drosophila Tantalus-like
Probab=25.46 E-value=31 Score=27.22 Aligned_cols=9 Identities=44% Similarity=0.730 Sum_probs=7.9
Q ss_pred CCCcccccc
Q 013904 111 PTNFEAITS 119 (434)
Q Consensus 111 ~s~~eti~s 119 (434)
++||||||=
T Consensus 35 ~~~LETIfE 43 (61)
T PF15386_consen 35 PKNLETIFE 43 (61)
T ss_pred cCCcchhhc
Confidence 479999997
No 206
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=23.01 E-value=1.3e+02 Score=25.12 Aligned_cols=16 Identities=50% Similarity=0.522 Sum_probs=14.0
Q ss_pred ceEEEEeccccccccc
Q 013904 261 RVTLVLDLDETLVHSS 276 (434)
Q Consensus 261 K~tLVLDLD~TLVhS~ 276 (434)
..+|||+=|||.|.+.
T Consensus 39 ~~~lvLeeDGT~Vd~E 54 (81)
T cd06537 39 VLTLVLEEDGTAVDSE 54 (81)
T ss_pred ceEEEEecCCCEEccH
Confidence 4899999999999873
No 207
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=22.96 E-value=31 Score=27.03 Aligned_cols=18 Identities=11% Similarity=0.211 Sum_probs=15.3
Q ss_pred CccchhhhccccccccCC
Q 013904 202 YSQSFLVSHYDQEVDVNS 219 (434)
Q Consensus 202 ~~~~~l~~~c~~e~~~~~ 219 (434)
.+-+|+|++||++.....
T Consensus 17 ~~miYiCgdC~~en~lk~ 34 (62)
T KOG3507|consen 17 ATMIYICGDCGQENTLKR 34 (62)
T ss_pred ccEEEEeccccccccccC
Confidence 455799999999999886
No 208
>PRK15334 antigen presentation protein SpaN; Provisional
Probab=22.47 E-value=47 Score=32.73 Aligned_cols=46 Identities=17% Similarity=-0.031 Sum_probs=32.5
Q ss_pred cccccccccCCCCCCCCCCcccccccccCCCCcccccccccCCCCCCCCCCCCccCCC
Q 013904 95 EDPVLVRKMDSPPPACPTNFEAITSHVTDGNGIHFESIAQDDEGYEGGPAVPDMKADD 152 (434)
Q Consensus 95 ~~s~~~~~m~~~~~~~~s~~eti~sp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~ 152 (434)
-+|++.++|-.+ ..+--+-||| |..|++ ..+.+.-...+++||.|-
T Consensus 229 qlsggdekmpla--aqskp~mtif-pt~dgv---------kged~~LTYrFQRWG~d~ 274 (336)
T PRK15334 229 QLTGGDEKMPLA--AQSKPMMTIF-PTADGV---------KGEDSSLTYRFQRWGNDY 274 (336)
T ss_pred hccCCCcCCcch--hccCcceeee-ecccCc---------cCcccceeehhhhhcCcc
Confidence 467888999865 3456678999 556665 234466667889999884
No 209
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=22.10 E-value=1.5e+02 Score=24.55 Aligned_cols=17 Identities=47% Similarity=0.542 Sum_probs=14.4
Q ss_pred CceEEEEeccccccccc
Q 013904 260 KRVTLVLDLDETLVHSS 276 (434)
Q Consensus 260 kK~tLVLDLD~TLVhS~ 276 (434)
...+|||+=|||.|.+.
T Consensus 39 ~~~~lvL~eDGT~Vd~E 55 (78)
T cd06539 39 GLVTLVLEEDGTVVDTE 55 (78)
T ss_pred CCcEEEEeCCCCEEccH
Confidence 35799999999999873
No 210
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=21.52 E-value=4.5e+02 Score=24.84 Aligned_cols=118 Identities=14% Similarity=0.177 Sum_probs=67.9
Q ss_pred CCceEEEEeccccccccccccCCCCCceeEEEecceeceeEEeecchHHHHHHHhh-cCeEEEEEcCCchHHHHHHHHHh
Q 013904 259 RKRVTLVLDLDETLVHSSTEPCDDADFTFQVFFNMKEHTVYVRQRPFLRTFLERVA-EMFEIIVFTASESVYAEKLLDIL 337 (434)
Q Consensus 259 ~kK~tLVLDLD~TLVhS~~~~~~~~d~~~~v~~~~~~~~~~V~lRP~l~eFL~~ls-k~yEIvI~Tas~~~YA~~Il~~L 337 (434)
.+-+.||+|.||||.+-..-.....+ .+. .+ ..|-|.- ++.+. -.-++.|-|.-...-++.=++.|
T Consensus 6 ~~IkLli~DVDGvLTDG~ly~~~~Ge-e~K--------aF--nv~DG~G--ik~l~~~Gi~vAIITGr~s~ive~Ra~~L 72 (170)
T COG1778 6 KNIKLLILDVDGVLTDGKLYYDENGE-EIK--------AF--NVRDGHG--IKLLLKSGIKVAIITGRDSPIVEKRAKDL 72 (170)
T ss_pred hhceEEEEeccceeecCeEEEcCCCc-eee--------ee--eccCcHH--HHHHHHcCCeEEEEeCCCCHHHHHHHHHc
Confidence 56789999999999876432111100 000 11 1233322 22333 57899999999999999888888
Q ss_pred CCCCCeeeEEEecccceeeCCcccccccccCCCCCcEEEEECChhhhccCCCCeeeeee
Q 013904 338 DPDRMLIARRAYRESCIFSDGSYAKDLTILGVDLARIAIIDNSPQVFRLQLDNGIPIKS 396 (434)
Q Consensus 338 DP~~~~F~~rl~Re~c~~~~g~y~KDL~~Lgrdl~~vIIIDDsp~~~~~qp~NgI~I~~ 396 (434)
..+. +|..+--... .|..=+.+++.++++|..|-|..--|..-..=|+++.+
T Consensus 73 GI~~-~~qG~~dK~~------a~~~L~~~~~l~~e~~ayiGDD~~Dlpvm~~vGls~a~ 124 (170)
T COG1778 73 GIKH-LYQGISDKLA------AFEELLKKLNLDPEEVAYVGDDLVDLPVMEKVGLSVAV 124 (170)
T ss_pred CCce-eeechHhHHH------HHHHHHHHhCCCHHHhhhhcCccccHHHHHHcCCcccc
Confidence 7764 2222111111 22334457788999999887766555433334444443
No 211
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=20.68 E-value=1.6e+02 Score=24.33 Aligned_cols=17 Identities=47% Similarity=0.472 Sum_probs=14.5
Q ss_pred CceEEEEeccccccccc
Q 013904 260 KRVTLVLDLDETLVHSS 276 (434)
Q Consensus 260 kK~tLVLDLD~TLVhS~ 276 (434)
...+|||+-|||.|...
T Consensus 39 ~~~~lvL~eDGTeVddE 55 (78)
T cd01615 39 APVTLVLEEDGTEVDDE 55 (78)
T ss_pred CCeEEEEeCCCcEEccH
Confidence 56789999999999763
No 212
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=20.50 E-value=1.6e+02 Score=24.15 Aligned_cols=17 Identities=47% Similarity=0.591 Sum_probs=14.4
Q ss_pred CceEEEEeccccccccc
Q 013904 260 KRVTLVLDLDETLVHSS 276 (434)
Q Consensus 260 kK~tLVLDLD~TLVhS~ 276 (434)
...+|+|+=|||.|.+.
T Consensus 37 ~~~~l~L~eDGT~VddE 53 (74)
T smart00266 37 SPVTLVLEEDGTIVDDE 53 (74)
T ss_pred CCcEEEEecCCcEEccH
Confidence 36799999999999773
Done!