BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013908
(434 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JHN|A Chain A, Crystal Structure Of The Lumenal Domain Of Calnexin
Length = 424
Score = 304 bits (779), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 169/388 (43%), Positives = 223/388 (57%), Gaps = 24/388 (6%)
Query: 36 ESFDESFEGRWIVSQ--KDE-------YKGVW-----KHSKSEGHEDYGLLVGEPAKKYA 81
+SFD WI+S+ KD+ Y G W K +K G D GL++ AK +A
Sbjct: 30 DSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPG--DKGLVLMSRAKHHA 87
Query: 82 IVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMF 141
I +L++P +++QYEV QNG+ECGGAY+K L + +F +++PY IMF
Sbjct: 88 ISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLS-KTPELNLDQFHDKTPYTIMF 146
Query: 142 GPDKCGATNKVHFILKHKNPKSGEYIEHHLKNP----PSVPSDKLTHVYTAILKPDNELR 197
GPDKCG K+HFI +HKNPK+G Y E H K P + +DK TH+YT IL PDN
Sbjct: 147 GPDKCGEDYKLHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFE 206
Query: 198 ILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDED 257
IL+D N L +D PP+ R KIPDPDAVKP+DW+ED
Sbjct: 207 ILVDQSIVNSGNLL--NDMTPPVNPSREIEDPEDQKPEDWDERPKIPDPDAVKPDDWNED 264
Query: 258 APMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCG 317
AP +I DE+A KP+GWL A KP AP+I NPKCE+APGCG
Sbjct: 265 APAKIPDEEATKPDGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPKCESAPGCG 324
Query: 318 EWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFE-LDKPDFEPIAAVGIEIW 376
W+RPM NP YKGKW P IDNPNY+GIWKP++IPNP++FE L+ P +A+G+E+W
Sbjct: 325 VWQRPMIDNPNYKGKWKPPMIDNPNYQGIWKPRKIPNPDFFEDLEPFKMTPFSAIGLELW 384
Query: 377 TMQDGILFDNILISKDEKVAESYRASAW 404
+M I FDN ++ D +V + + W
Sbjct: 385 SMTSDIFFDNFIVCGDRRVVDDWANDGW 412
>pdb|3RG0|A Chain A, Structural And Functional Relationships Between The Lectin
And Arm Domains Of Calreticulin
Length = 332
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 116/370 (31%), Positives = 163/370 (44%), Gaps = 88/370 (23%)
Query: 40 ESFEGRWIVSQ--KDEYKGVWKHSKSEG--HEDYGLLVGEPAKKYAIVKELDEPLSLKDG 95
+++ RW+ S+ D K V K G +D GL + A+ YA+ + EP S K
Sbjct: 17 DAWTNRWVESKHKSDFGKFVLSSGKFYGDLEKDKGLQTSQDARFYALSAKF-EPFSNKGQ 75
Query: 96 TVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHF 154
T+V+Q+ V+ + ++CGG Y+K L P +G K+ +S Y IMFGPD CG T KVH
Sbjct: 76 TLVVQFTVKHEQNIDCGGGYVK-LFP--SGLDQKDMHGDSEYNIMFGPDICGPGTKKVHV 132
Query: 155 ILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAAD 214
I +K I +++ D+ TH+YT I++PDN + ID + + +
Sbjct: 133 IFNYKGKNV--LINKDIRSK----DDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDW 186
Query: 215 DFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWL 274
DF PP KI DPDA KPEDWDE A +I+D KPE W
Sbjct: 187 DFLPP---------------------KKIKDPDAAKPEDWDERA--KIDDPTDSKPEDW- 222
Query: 275 XXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWH 334
+ GEWK NP YKG W
Sbjct: 223 ------------------------------------DKGGSGGEWKPRQIDNPDYKGTWI 246
Query: 335 APHIDNPNYKGIWKPQQIPNPNYFELDKPDFEPIAAVGIEIWTMQDGILFDNILISKDEK 394
P IDNP Y P+ N + D A +G+++W ++ G +FDN LI+ DE
Sbjct: 247 HPEIDNPEYS--------PDANIYAYDS-----FAVLGLDLWQVKSGTIFDNFLITNDEA 293
Query: 395 VAESYRASAW 404
AE + W
Sbjct: 294 YAEEFGNETW 303
>pdb|3O0V|A Chain A, Crystal Structure Of The Calreticulin Lectin Domain
Length = 273
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 96/185 (51%), Gaps = 15/185 (8%)
Query: 40 ESFEGRWIVSQ--KDEYKGVWKHSKSEG--HEDYGLLVGEPAKKYAIVKELDEPLSLKDG 95
+++ RW+ S+ D K V K G +D GL + A+ YA+ + EP S K
Sbjct: 17 DAWTNRWVESKHKSDFGKFVLSSGKFYGDLEKDKGLQTSQDARFYALSAKF-EPFSNKGQ 75
Query: 96 TVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHF 154
T+V+Q+ V+ + ++CGG Y+K L P +G K+ +S Y IMFGPD CG T KVH
Sbjct: 76 TLVVQFTVKHEQNIDCGGGYVK-LFP--SGLDQKDMHGDSEYNIMFGPDICGPGTKKVHV 132
Query: 155 ILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAAD 214
I +K I +++ D+ TH+YT I++PDN + ID + + +
Sbjct: 133 IFNYKGKNV--LINKDIRSK----DDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDW 186
Query: 215 DFQPP 219
DF PP
Sbjct: 187 DFLPP 191
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 365 FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAW 404
++ A +G+++W ++ G +FDN LI+ DE AE + W
Sbjct: 205 YDSFAVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETW 244
>pdb|3O0W|A Chain A, Structural Basis Of Carbohydrate Recognition By
Calreticulin
pdb|3O0X|A Chain A, Structural Basis Of Carbohydrate Recognition By
Calreticulin
pdb|3O0X|B Chain B, Structural Basis Of Carbohydrate Recognition By
Calreticulin
Length = 273
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 95/185 (51%), Gaps = 15/185 (8%)
Query: 40 ESFEGRWIVSQ--KDEYKGVWKHSKSEG--HEDYGLLVGEPAKKYAIVKELDEPLSLKDG 95
+++ RW+ S+ D K V K G +D GL + A+ YA+ + EP S K
Sbjct: 17 DAWTNRWVESKHKSDFGKFVLSSGKFYGDLEKDKGLQTSQDARFYALSAKF-EPFSNKGQ 75
Query: 96 TVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHF 154
T+V+Q+ V+ + ++CGG Y+K L P +G K+ +S Y I FGPD CG T KVH
Sbjct: 76 TLVVQFTVKHEQNIDCGGGYVK-LFP--SGLDQKDXHGDSEYNIXFGPDICGPGTKKVHV 132
Query: 155 ILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAAD 214
I +K I +++ D+ TH+YT I++PDN + ID + + +
Sbjct: 133 IFNYKGKNV--LINKDIRSK----DDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDW 186
Query: 215 DFQPP 219
DF PP
Sbjct: 187 DFLPP 191
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 365 FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAW 404
++ A +G+++W ++ G +FDN LI+ DE AE + W
Sbjct: 205 YDSFAVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETW 244
>pdb|3POS|A Chain A, Crystal Structure Of The Globular Domain Of Human
Calreticulin
pdb|3POS|B Chain B, Crystal Structure Of The Globular Domain Of Human
Calreticulin
pdb|3POS|C Chain C, Crystal Structure Of The Globular Domain Of Human
Calreticulin
pdb|3POW|A Chain A, Crystal Structure Of The Globular Domain Of Human
Calreticulin
Length = 265
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 85/179 (47%), Gaps = 15/179 (8%)
Query: 45 RWIVSQ--KDEYKGVWKHSKSEGHE--DYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQ 100
RWI S+ D K V K G E D GL + A+ YA+ EP S K T+V+Q
Sbjct: 27 RWIESKHKSDFGKFVLSSGKFYGDEEKDKGLQTSQDARFYALSASF-EPFSNKGQTLVVQ 85
Query: 101 YEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHK 159
+ V+ + ++CGG Y+K L P D+E Y IMFGPD CG T KVH I +K
Sbjct: 86 FTVKHEQNIDCGGGYVK-LFPNSLDQTDMHGDSE--YNIMFGPDICGPGTKKVHVIFNYK 142
Query: 160 NPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQP 218
+ D+ TH+YT I++PDN + ID + + + DF P
Sbjct: 143 GKNV------LINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLP 195
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 365 FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAW 404
++ +G+++W ++ G +FDN LI+ DE AE + W
Sbjct: 205 YDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETW 244
>pdb|1HHN|A Chain A, Calreticulin P-Domain
Length = 101
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 55/116 (47%), Gaps = 23/116 (19%)
Query: 242 KIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXX 301
KI DPDA KPEDWDE A +I+D KPE W KP
Sbjct: 3 KIKDPDAAKPEDWDERA--KIDDPTDSKPEDW-------------DKPEHIPD------- 40
Query: 302 APKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNY 357
P P+ GEW+ P+ +NP YKG+W IDNP+YKG W +I NP Y
Sbjct: 41 -PDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEY 95
>pdb|1K9C|A Chain A, Solution Structure Of Calreticulin P-Domain Subdomain
(Residues 189-261)
Length = 74
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 44/109 (40%), Gaps = 37/109 (33%)
Query: 242 KIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXX 301
KI DPDA KPEDWDE A +I+D KPE W
Sbjct: 3 KIKDPDAAKPEDWDERA--KIDDPTDSKPEDW---------------------------- 32
Query: 302 APKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQ 350
D P+ P K+P + G+W P I NP YKG WKP+
Sbjct: 33 ----DKPEHIPDPDA---KKPEDWDEEMDGEWEPPVIQNPEYKGEWKPR 74
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 35/94 (37%), Gaps = 40/94 (42%)
Query: 240 RAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXX 299
RAKI DP KPEDW D P I D DA KPE W
Sbjct: 18 RAKIDDPTDSKPEDW--DKPEHIPDPDAKKPEDWDEEMD--------------------- 54
Query: 300 XXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKW 333
GEW+ P+ +NP YKG+W
Sbjct: 55 -----------------GEWEPPVIQNPEYKGEW 71
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 137 YMIMFGPDKCGATNKVHFILKHKNPKSGE-YIEHHLKNPP 175
++++ GP CG T + I + P G+ YIE +L P
Sbjct: 34 FLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADP 73
>pdb|1K91|A Chain A, Solution Structure Of Calreticulin P-Domain Subdomain
(Residues 221-256)
Length = 37
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/15 (86%), Positives = 14/15 (93%)
Query: 243 IPDPDAVKPEDWDED 257
IPDPDA KPEDWDE+
Sbjct: 6 IPDPDAKKPEDWDEE 20
>pdb|2WJS|A Chain A, Crystal Structure Of The Lg1-3 Region Of The Laminin
Alpha2 Chain
Length = 608
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 338 IDNPNYKGIWKPQQIPNPNYFELDKPDFEPIAAVGIEIWT 377
+ +P+Y G+ K + N KP F +AAV I++ T
Sbjct: 370 LSSPDYVGVTKGCSLENVYTVSFPKPGFVELAAVSIDVGT 409
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.136 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,204,940
Number of Sequences: 62578
Number of extensions: 568354
Number of successful extensions: 956
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 892
Number of HSP's gapped (non-prelim): 35
length of query: 434
length of database: 14,973,337
effective HSP length: 102
effective length of query: 332
effective length of database: 8,590,381
effective search space: 2852006492
effective search space used: 2852006492
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)