Query 013908
Match_columns 434
No_of_seqs 166 out of 752
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 08:35:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013908.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013908hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00262 Calreticulin: Calreti 100.0 6E-139 1E-143 1053.6 16.5 352 32-389 1-367 (367)
2 KOG0675 Calnexin [Posttranslat 100.0 2E-135 3E-140 1045.6 31.2 419 8-429 5-454 (558)
3 KOG0674 Calreticulin [Posttran 100.0 6E-111 1E-115 825.9 27.4 345 11-414 5-358 (406)
4 KOG0675 Calnexin [Posttranslat 100.0 3.9E-34 8.6E-39 296.0 22.6 221 94-357 169-394 (558)
5 PF00262 Calreticulin: Calreti 100.0 1.8E-35 4E-40 300.2 4.1 124 221-350 216-341 (367)
6 KOG0674 Calreticulin [Posttran 99.9 3.3E-23 7.2E-28 205.7 16.0 259 84-389 21-314 (406)
7 PF06439 DUF1080: Domain of Un 52.5 1.7E+02 0.0037 26.1 12.6 142 37-208 5-153 (185)
8 PF12273 RCR: Chitin synthesis 41.8 14 0.0003 32.8 1.3 7 5-11 1-7 (130)
9 PF07172 GRP: Glycine rich pro 37.7 27 0.00058 30.1 2.4 20 1-21 1-20 (95)
10 PF13117 Cag12: Cag pathogenic 36.5 7.4 0.00016 34.6 -1.2 49 53-102 46-97 (113)
11 PF07210 DUF1416: Protein of u 35.3 52 0.0011 28.1 3.7 27 94-121 5-31 (85)
12 PRK14758 hypothetical protein; 30.8 49 0.0011 22.5 2.2 14 1-14 1-14 (27)
13 PHA02291 hypothetical protein 29.7 50 0.0011 29.6 2.8 24 1-24 1-24 (132)
14 PF14083 PGDYG: PGDYG protein 29.1 63 0.0014 28.2 3.2 58 42-102 16-85 (102)
15 PF15240 Pro-rich: Proline-ric 23.8 53 0.0012 31.6 2.0 18 7-24 1-18 (179)
16 COG5023 Tubulin [Cytoskeleton] 21.4 41 0.00088 36.0 0.8 48 385-433 88-136 (443)
17 TIGR02024 FtcD glutamate formi 21.3 2.6E+02 0.0057 29.0 6.5 44 368-433 173-217 (298)
No 1
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes. It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....
Probab=100.00 E-value=5.6e-139 Score=1053.60 Aligned_cols=352 Identities=59% Similarity=1.160 Sum_probs=263.8
Q ss_pred eeeecccCcc--cCCCceeccCC------CccceEEEeCCC----CCCCCceeecCcccceeeecccCCCccCCCCcEEE
Q 013908 32 TILYESFDES--FEGRWIVSQKD------EYKGVWKHSKSE----GHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVL 99 (434)
Q Consensus 32 ~~F~E~F~~~--~~~rWv~S~~~------~y~G~W~~~~~~----~~~D~GLv~~~~ar~yaIS~kl~~P~~~~~k~LVv 99 (434)
|||+|+|++. |.+|||+|+++ +|.|+|+++++. ..+|+||||+++|||||||++|++||++++|+|||
T Consensus 1 v~F~E~F~~~~~~~~rWv~S~~~k~~~~~~y~G~W~~~~~~~~~~~~~DkGLv~~~~ak~yaIS~kl~kPf~~~~k~LVv 80 (367)
T PF00262_consen 1 VYFFETFDDGDDWKSRWVQSEAKKDDEIAKYDGKWELEAGKWYPGFEGDKGLVTKSDAKHYAISAKLDKPFSNKDKDLVV 80 (367)
T ss_dssp EEEEE---SGGGGGGTEEE--SSST--------EEEEEB-SSTSSTTTTBEEEEESSSEEEEEEEEEEEEE-STTS-EEE
T ss_pred CeEeEecCCCCcccCceeeCCCcCcCccccCceEEEEecccccCCCcCceeeEeccchhhhhhhhhCCCccccCCCcEEE
Confidence 6999999874 99999999766 569999999983 37899999999999999999999999999999999
Q ss_pred EEEEEecCccccCCceeEecCcCCCCCccc-ccCCCCCeEEEEccCCCCCCCeEEEEEecCCCCCccccccccCCCCCC-
Q 013908 100 QYEVRLQNGLECGGAYLKYLRPQEAGWVSK-EFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSV- 177 (434)
Q Consensus 100 QYeVk~q~~~~CGGaYiKLl~~~~~~~~~~-~f~~~tpY~imFGPD~Cg~~~kvh~i~~~~np~~g~~~e~~~~~~~~~- 177 (434)
|||||||++|+|||||||||+. ..++. +|+++|||+||||||+||++++|||||||+||++++++++|+++++..
T Consensus 81 QYeVK~q~~idCGGaYIKLL~~---~~~~~~~f~~~TpY~IMFGPD~CG~~~kvHfI~~~~nP~~~~~~e~~l~~~p~~~ 157 (367)
T PF00262_consen 81 QYEVKFQQGIDCGGAYIKLLPA---SFDQEENFSDKTPYSIMFGPDKCGSSNKVHFIFRHKNPITGEIEEKHLKKPPISC 157 (367)
T ss_dssp EEEEEETT--SEEE--EEEEBT---TSSGGGG-STTS-ESEEEEEEEESTTEEEEEEEEEE-TTTEETTEEEE-SSSSB-
T ss_pred EEEEEeecceeccceEEEEecC---ccchhhhcCCCCCceEEeCCccCCCCceEEEEEEecCCCCCcccceecccCCccc
Confidence 9999999999999999999974 34454 999999999999999999999999999999999999999999988875
Q ss_pred CCCCCCceEEEEEcCCCceEEEecCeeeccccccccCCCCCCCCCCCCcCCCCCCCCCCccccCccCCCCCCCCCCCCCC
Q 013908 178 PSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIPEKTIPDPDDKKPEDWDERAKIPDPDAVKPEDWDED 257 (434)
Q Consensus 178 ~~d~~tHlYTLii~pdnt~ei~IDg~~~~~g~l~~~~d~~p~~~pp~~I~DP~d~KP~DWdd~~~I~Dp~~~KPeDWde~ 257 (434)
..|++||||||||||||||||+|||+++++|||+ ++|+|+|+||++|+||+|+||+|||||++|+||+|+||+||||+
T Consensus 158 ~~D~~tHlYTLii~~dntyeI~IDg~~~~~G~L~--~df~Pp~~ppk~I~Dp~d~KP~DW~d~~~I~Dp~~~KPedWdE~ 235 (367)
T PF00262_consen 158 FTDKLTHLYTLIIRPDNTYEIRIDGEVVKSGSLL--EDFDPPFNPPKEIDDPNDKKPEDWDDREKIPDPNAKKPEDWDED 235 (367)
T ss_dssp HHSSSEEEEEEEEETTTEEEEEETTEEEEEEEHH--HHSE--ESS-SCEE-TTT--TTT-TTTSEEC-SSTT--TTTSSS
T ss_pred ccCCCcceEEEEEcCCCeEEEEECCEEeeccccc--cccccCcCChhcccCccccCCcchhhhcccCCccccCccccccc
Confidence 5899999999999999999999999999999999 77999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCcCCc
Q 013908 258 APMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEEDGEWEAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPH 337 (434)
Q Consensus 258 ~p~~I~Dp~a~KP~dW~e~ep~~I~DP~~~kP~dWd~~~~G~W~~p~I~NP~~~~~~~cG~W~~P~I~NP~ykG~W~pp~ 337 (434)
+|++|+||+|+||++|+|+||++|+||+|+||+|||++++|+|+||+|+||+|.. +|||+|++|||.||+|||+|+|||
T Consensus 236 ~p~~I~D~~a~kP~~W~edep~~IpDp~a~kP~dWdde~dGeWe~P~I~NP~C~~-~gCG~w~~p~i~Np~YkG~W~pp~ 314 (367)
T PF00262_consen 236 EPEFIPDPDAVKPEGWLEDEPEYIPDPEAKKPEDWDDEEDGEWEAPMIPNPKCKE-PGCGEWKPPMIKNPNYKGKWKPPM 314 (367)
T ss_dssp --SEEE-TT----SS-BSSS-SEEE-TT--S-TT--CCCCSS----EEE-CGGTT-S-BSS----EEE-TT--SS----E
T ss_pred CcccccCccccCCcchhhCCCcccCCCCCCCCCCCCccccCCccCCccCCCcccC-CCccccccccccCccccCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCC-CCCccceeEEEEeEeecCcEEeEeEe
Q 013908 338 IDNPNYKGIWKPQQIPNPNYFELDKP-DFEPIAAVGIEIWTMQDGILFDNILI 389 (434)
Q Consensus 338 I~NP~YkG~W~P~~I~NP~y~~~~~p-~~~~i~~ig~ElW~~~~~~~fdNi~v 389 (434)
|+||+|+|+|+||+|+||+|+++.+| .+.+|++||||||||++|++||||||
T Consensus 315 I~NP~YkG~W~p~~I~NP~y~~d~~p~~~~~i~~ig~ElW~~~~~~~FDNi~i 367 (367)
T PF00262_consen 315 IPNPNYKGEWKPRKIPNPDYFEDPNPYNFEPIGAIGFELWQMSSGIIFDNILI 367 (367)
T ss_dssp EE-TT---S----EEE-TT--SSTTTT--S-EEEEEEEEEESSS-EEEEEEEE
T ss_pred cCCccccccccccccCCCcccCCCCccccCceeEEEEEEEeccCCceeeeEEC
Confidence 99999999999999999999999999 78999999999999999999999997
No 2
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-135 Score=1045.64 Aligned_cols=419 Identities=58% Similarity=1.028 Sum_probs=388.5
Q ss_pred HHHHHHHHHHHhhhcccccCCC------------cceeeecccCcc--cCCCceeccCC---------CccceEEEeCCC
Q 013908 8 SLRFALLLFAAFVSFQLISASD------------DATILYESFDES--FEGRWIVSQKD---------EYKGVWKHSKSE 64 (434)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~------------~~~~F~E~F~~~--~~~rWv~S~~~---------~y~G~W~~~~~~ 64 (434)
.|+|++|||++++++...+.+. -+.-|+|+|+.+ +. |||.|.++ +|.|+|.++++.
T Consensus 5 ~~~~~~lLli~~v~~~~~~~~~~~~e~~~~~~~~ykspf~d~Fd~~~~~~-rWi~S~akk~d~~~ei~kY~G~W~~ee~~ 83 (558)
T KOG0675|consen 5 MLLFLFLLLIAAVDGNDDDYEDTCTEPSVFSKESYKSPFADHFDGGTAST-RWILSWAKKDDIDDEIAKYDGVWDLEEPP 83 (558)
T ss_pred HHHHHHHHHHHHhhccccccccccccccccccccccCcchhcccccccce-eeeeeecccccccchhhhccceeeeccCc
Confidence 4666777777777755432111 112277778753 34 89999874 899999999864
Q ss_pred ---CCCCCceeecCcccceeeecccCCCccCCCCcEEEEEEEEecCccccCCceeEecCcCCCCCcccccCCCCCeEEEE
Q 013908 65 ---GHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMF 141 (434)
Q Consensus 65 ---~~~D~GLv~~~~ar~yaIS~kl~~P~~~~~k~LVvQYeVk~q~~~~CGGaYiKLl~~~~~~~~~~~f~~~tpY~imF 141 (434)
.++|+|||+++.|||||||+.|++||++..++||||||||+|+|++|||||||||+.+.....+++|+++|||+|||
T Consensus 84 ~~~~~~D~GLvvkskakhhaI~a~L~~P~~~~~~plVVQYEvk~qeg~eCGGAYlKLLs~~~~~~~l~~f~dktpy~ImF 163 (558)
T KOG0675|consen 84 KSHLAGDYGLVVKSKAKHHAISAELEEPFNFKEKPLVVQYEVKFQEGLECGGAYLKLLSQGTAGENLKNFDDKTPYTIMF 163 (558)
T ss_pred cccCCcccceEeeccchhhHHHhhhcCCcccCCCCeEEEEEEecCCCcccchhHHHhhcccccccchhccCCCCCeEEEe
Confidence 48999999999999999999999999999999999999999999999999999998866778899999999999999
Q ss_pred ccCCCCCCCeEEEEEecCCCCCccccccccCCCCC----CCCCCCCceEEEEEcCCCceEEEecCeeeccccccccCCCC
Q 013908 142 GPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPS----VPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQ 217 (434)
Q Consensus 142 GPD~Cg~~~kvh~i~~~~np~~g~~~e~~~~~~~~----~~~d~~tHlYTLii~pdnt~ei~IDg~~~~~g~l~~~~d~~ 217 (434)
|||+||.+++|||||+|+||+||+++|||++.|+. ..+|++||||||||+|||||+|||||+++++|||+ .||.
T Consensus 164 GPDKCG~~~kvhFIf~hknp~tG~~~ekh~~~pp~~l~~~~~d~~tHLYTLvl~pd~sfeI~vDg~vv~~G~ll--~Df~ 241 (558)
T KOG0675|consen 164 GPDKCGETNKVHFIFRHKNPITGEISEKHLKAPPSSLKKPFDDKLTHLYTLVLKPDNTFEIRVDGKVVYKGSLL--TDFE 241 (558)
T ss_pred CccccCCcccEEEEEeeccCCCCeeehhhccCCCcccccccccCCceeEEEEecCCCeEEEEecCcEEEecccc--cccC
Confidence 99999999999999999999999999999999998 45699999999999999999999999999999999 7999
Q ss_pred CCCCCCCCcCCCCCCCCCCccccCccCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCC
Q 013908 218 PPLIPEKTIPDPDDKKPEDWDERAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEED 297 (434)
Q Consensus 218 p~~~pp~~I~DP~d~KP~DWdd~~~I~Dp~~~KPeDWde~~p~~I~Dp~a~KP~dW~e~ep~~I~DP~~~kP~dWd~~~~ 297 (434)
||++||++|+||+|.||+|||+|++||||+|+||+||||++|.+|+|++|+||++|+++||++|+||+|+||+||+++++
T Consensus 242 Ppv~Pp~eI~Dp~d~KP~dWDer~kIpDpnAvKPdDWDE~~P~~Ipd~davkP~~Wledep~~I~DP~A~KPedWdee~d 321 (558)
T KOG0675|consen 242 PPVTPPKEIPDPSDKKPEDWDERAKIPDPNAVKPDDWDEDAPLSIPDEDAVKPEGWLEDEPEYIPDPEAQKPEDWDEEED 321 (558)
T ss_pred CCCCCccccCCcccCCccchhhhhcCCCcccCCccccCcCCCccCCCccccCCccccccCCcccCCcccCCCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCcCCccCCCCCCCCCCCCCCCCCCCCCCCCC-CCCccceeEEEEe
Q 013908 298 GEWEAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKP-DFEPIAAVGIEIW 376 (434)
Q Consensus 298 G~W~~p~I~NP~~~~~~~cG~W~~P~I~NP~ykG~W~pp~I~NP~YkG~W~P~~I~NP~y~~~~~p-~~~~i~~ig~ElW 376 (434)
|+|++|+|.||+|..++|||+|++|||.||+|||+|.+|||.||+|+|+|+||+|+||+||++.+| .|.+|.+||+|||
T Consensus 322 GeWeap~I~NP~C~~~~GCG~wk~p~I~NP~YKGkw~~pmI~NP~y~G~W~PRkI~NPdyfEd~~p~~~~pIsavglElW 401 (558)
T KOG0675|consen 322 GEWEAPMIINPKCKEASGCGEWKPPMINNPNYKGKWILPMIDNPNYQGIWKPRKIPNPDYFEDDKPFTLTPISAVGLELW 401 (558)
T ss_pred CccccccccCchhhcCCCCCcccCcccCCCccCCCCccccccCccccCccccccCCCcccccccCcccccchhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred EeecCcEEeEeEeeCCHHHHHHHHHhhcCCcchHHHHhHHHHHHhccCCCCCc
Q 013908 377 TMQDGILFDNILISKDEKVAESYRASAWKPKFDVEKEKLKAEEAAAGSDGLAG 429 (434)
Q Consensus 377 ~~~~~~~fdNi~v~~d~~~A~~~~~~t~~~k~~~e~~~~~~~~~~~~~~~~~~ 429 (434)
+|+++++|||||||+|++.|+.+++.||..|..++++.....++++.+.|..-
T Consensus 402 sMs~~IlfdNi~i~~~~e~a~~~~~~tw~~K~~~~~e~~~~~~~~~~~~~~~~ 454 (558)
T KOG0675|consen 402 SMSSNILFDNIIITKDIEVAEDIANFTWLLKAAAEREKPFVQQVMEAAEGHPW 454 (558)
T ss_pred hcCCCceeceeEEeccHHHHHHhhhhceeeehhhcccchHHHHHHhhccccch
Confidence 99999999999999999999999999999999999888766777777776543
No 3
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-111 Score=825.92 Aligned_cols=345 Identities=43% Similarity=0.828 Sum_probs=314.3
Q ss_pred HHHHHHHHhhhcccccCCCcceeeecccC--cccCCCceeccCCC-ccceEEEeCCCC----CCCCceeecCcccceeee
Q 013908 11 FALLLFAAFVSFQLISASDDATILYESFD--ESFEGRWIVSQKDE-YKGVWKHSKSEG----HEDYGLLVGEPAKKYAIV 83 (434)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~F~E~F~--~~~~~rWv~S~~~~-y~G~W~~~~~~~----~~D~GLv~~~~ar~yaIS 83 (434)
|.+|+|+++|.++ ++.|||.|.|. ++|+.|||+|++++ ..|.|.++++.. ..|+||+|++++||||||
T Consensus 5 ~~~~~ll~~v~~~-----sa~Vyf~E~F~d~~~w~~rwv~skhk~~~fG~f~ls~g~f~g~~~~DkGiqTsqd~rfya~s 79 (406)
T KOG0674|consen 5 FWVLCLLALVALA-----SAEVYFKEEFLDEDGWENRWVQSKHKSRDFGKFVLSAGKFYGDEEKDKGIQTSQDARFYAIS 79 (406)
T ss_pred HHHHHHHHHHHHH-----hhhhhhhhhhcCCCCceEEEEEeeccccccCceEeccccccCcccccccccccccceeeeee
Confidence 4455666677777 56799999994 57999999999986 889999999864 459999999999999999
Q ss_pred cccCCCccCCCCcEEEEEEEEecCccccCCceeEecCcCCCCCcccccCCCCCeEEEEccCCCCC-CCeEEEEEecCCCC
Q 013908 84 KELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGA-TNKVHFILKHKNPK 162 (434)
Q Consensus 84 ~kl~~P~~~~~k~LVvQYeVk~q~~~~CGGaYiKLl~~~~~~~~~~~f~~~tpY~imFGPD~Cg~-~~kvh~i~~~~np~ 162 (434)
++|+ ||+|++|+|||||+|||+|.|+|||||||||+ ++.|+.+|+++|||.||||||+||+ ++|||+|++|++.
T Consensus 80 a~F~-~FsnK~kTLv~q~tVkheQ~~dcgggyiKl~~---~d~Dq~~f~ges~y~iMfGPDICG~~tkKVhvil~ykg~- 154 (406)
T KOG0674|consen 80 AKFK-PFSNKGKTLVIQFTVKHEQKIDCGGGYIKLFP---ADLDQTDFHGESPYNIMFGPDICGFGTKKVHVILNYKGK- 154 (406)
T ss_pred cccc-cccccCceEEEEEEecccccccCCceeEEeee---cccchhhcCCCcccccccCCcccCCCCceEEEEEecccc-
Confidence 9996 69999999999999999999999999999997 5689999999999999999999998 8999999999874
Q ss_pred CccccccccCCCCCCCCCCCCceEEEEEcCCCceEEEecCeeeccccccccCCCCCCCCCCCCcCCCCCCCCCCccccCc
Q 013908 163 SGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIPEKTIPDPDDKKPEDWDERAK 242 (434)
Q Consensus 163 ~g~~~e~~~~~~~~~~~d~~tHlYTLii~pdnt~ei~IDg~~~~~g~l~~~~d~~p~~~pp~~I~DP~d~KP~DWdd~~~ 242 (434)
+|++++.++|+.|.+|||||||||||+||+|+|||+.+.+|||+ .||+ |+|+++|.||.++||+|||+|++
T Consensus 155 -----nhlikK~i~Ck~D~~tHlYTlIlRPd~TYeVkIDn~~~esGsle--~DWd--ll~~KKikdP~a~KPedWDer~~ 225 (406)
T KOG0674|consen 155 -----NHLIKKDIRCKDDELTHLYTLILRPDATYEVKIDNQQVESGSLE--DDWD--LLPPKKIKDPDAKKPEDWDEREY 225 (406)
T ss_pred -----cchhccccccccCCcceeEEEEecCCCeeEEEEcccccccCccc--cccc--cccccccCCccccCcccchhhcc
Confidence 58889999999999999999999999999999999999999999 5665 89999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCCCCCCC
Q 013908 243 IPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEEDGEWEAPKIDNPKCEAAPGCGEWKRP 322 (434)
Q Consensus 243 I~Dp~~~KPeDWde~~p~~I~Dp~a~KP~dW~e~ep~~I~DP~~~kP~dWd~~~~G~W~~p~I~NP~~~~~~~cG~W~~P 322 (434)
|+||+++||+||+ .|++|+||+++||+||++++||+|++ |
T Consensus 226 I~DpeD~Kp~dwe---------------------~pehipDpdakKpedWddemDGEWe~-------------------P 265 (406)
T KOG0674|consen 226 IPDPEDKKPQDWE---------------------KPEHIPDPDAKKPEDWDDEMDGEWEA-------------------P 265 (406)
T ss_pred CCCccccCccccc---------------------cccccCCcccCCcccccccccCCcCC-------------------C
Confidence 9999999998884 47788888888888889888866666 5
Q ss_pred CCCCCCCCCCCcCCccCCCCCCCCCCCCCCCCCCCCCCCCC-CCCccceeEEEEeEeecCcEEeEeEeeCCHHHHHHHHH
Q 013908 323 MKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKP-DFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRA 401 (434)
Q Consensus 323 ~I~NP~ykG~W~pp~I~NP~YkG~W~P~~I~NP~y~~~~~p-~~~~i~~ig~ElW~~~~~~~fdNi~v~~d~~~A~~~~~ 401 (434)
||+||+|+|+|+|..|.||+|||.|..++|.||+|..+... .|.+|++||||||||.||+||||||||+|+++|+++++
T Consensus 266 ~i~nPey~gewkPkqi~np~yKg~w~hp~i~npey~~d~~ly~~~ni~~lgldLWQVKSgtIFDN~LitdD~eyA~k~~~ 345 (406)
T KOG0674|consen 266 MIPNPEYKGEWKPKQIKNPAYKGKWIHPEIDNPEYPDDPELYHYENIGVLGLDLWQVKSGTIFDNFLITDDEEYAEKFAN 345 (406)
T ss_pred CCCCccccCccCcccccCccccceeeccccCCCcCCCCcceeeecccceeeeeEEEeecceeecceEecCCHHHHHHHHH
Confidence 77888999999999999999999999999999999877765 78999999999999999999999999999999999999
Q ss_pred hhcCCcchHHHHh
Q 013908 402 SAWKPKFDVEKEK 414 (434)
Q Consensus 402 ~t~~~k~~~e~~~ 414 (434)
+||+..+.+|++.
T Consensus 346 eTwg~~k~~ek~~ 358 (406)
T KOG0674|consen 346 ETWGKTKDAEKEM 358 (406)
T ss_pred hhhcccccHHHHh
Confidence 9999877777644
No 4
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-34 Score=296.03 Aligned_cols=221 Identities=34% Similarity=0.617 Sum_probs=172.0
Q ss_pred CCcEEEEEEEEecCccccCCceeEecCcCCCCCcc-cccCCC-C-CeEEEEccCCCCCCCeEEEEEecCCCCCccccccc
Q 013908 94 DGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVS-KEFDNE-S-PYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHH 170 (434)
Q Consensus 94 ~k~LVvQYeVk~q~~~~CGGaYiKLl~~~~~~~~~-~~f~~~-t-pY~imFGPD~Cg~~~kvh~i~~~~np~~g~~~e~~ 170 (434)
|.+.-|||.+||-+.+ .|-|.--+.... ..+. +-|.+. | -||++.-||. .+.+.+.++-.+.|.+.+..
T Consensus 169 G~~~kvhFIf~hknp~--tG~~~ekh~~~p-p~~l~~~~~d~~tHLYTLvl~pd~-----sfeI~vDg~vv~~G~ll~Df 240 (558)
T KOG0675|consen 169 GETNKVHFIFRHKNPI--TGEISEKHLKAP-PSSLKKPFDDKLTHLYTLVLKPDN-----TFEIRVDGKVVYKGSLLTDF 240 (558)
T ss_pred CCcccEEEEEeeccCC--CCeeehhhccCC-CcccccccccCCceeEEEEecCCC-----eEEEEecCcEEEeccccccc
Confidence 4678899999999999 477765443322 2222 345443 2 2999998874 46666666655555443211
Q ss_pred cCCCCCCCCCCCCceEEEEEcCCCceEEEecCeeeccccccccCCCCCCCCCCCCcCCCCCCCCCCccccC--ccCCCCC
Q 013908 171 LKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIPEKTIPDPDDKKPEDWDERA--KIPDPDA 248 (434)
Q Consensus 171 ~~~~~~~~~d~~tHlYTLii~pdnt~ei~IDg~~~~~g~l~~~~d~~p~~~pp~~I~DP~d~KP~DWdd~~--~I~Dp~~ 248 (434)
.||. +.| +.|......+. +||+ .+.+|+||++.||+|||+++ +|+|++|
T Consensus 241 --~Ppv-------------~Pp-----~eI~Dp~d~KP-----~dWD----er~kIpDpnAvKPdDWDE~~P~~Ipd~da 291 (558)
T KOG0675|consen 241 --EPPV-------------TPP-----KEIPDPSDKKP-----EDWD----ERAKIPDPNAVKPDDWDEDAPLSIPDEDA 291 (558)
T ss_pred --CCCC-------------CCc-----cccCCcccCCc-----cchh----hhhcCCCcccCCccccCcCCCccCCCccc
Confidence 1111 112 34566656655 6654 79999999999999999976 8999999
Q ss_pred CCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCC
Q 013908 249 VKPEDWDEDAPMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEEDGEWEAPKIDNPKCEAAPGCGEWKRPMKRNPA 328 (434)
Q Consensus 249 ~KPeDWde~~p~~I~Dp~a~KP~dW~e~ep~~I~DP~~~kP~dWd~~~~G~W~~p~I~NP~~~~~~~cG~W~~P~I~NP~ 328 (434)
+||++|++++|.+|+||+|+||+||++++..++..|....|.|=...+||+|.+|||.||+| +|+|.+|||.||+
T Consensus 292 vkP~~Wledep~~I~DP~A~KPedWdee~dGeWeap~I~NP~C~~~~GCG~wk~p~I~NP~Y-----KGkw~~pmI~NP~ 366 (558)
T KOG0675|consen 292 VKPEGWLEDEPEYIPDPEAQKPEDWDEEEDGEWEAPMIINPKCKEASGCGEWKPPMINNPNY-----KGKWILPMIDNPN 366 (558)
T ss_pred cCCccccccCCcccCCcccCCCCCCCccccCccccccccCchhhcCCCCCcccCcccCCCcc-----CCCCccccccCcc
Confidence 99999999999999999999999999998888888888888888889999999999999999 5999999999999
Q ss_pred CCCCCcCCccCCCCCCCCCCCCCCCCCCC
Q 013908 329 YKGKWHAPHIDNPNYKGIWKPQQIPNPNY 357 (434)
Q Consensus 329 ykG~W~pp~I~NP~YkG~W~P~~I~NP~y 357 (434)
|+|+|+||+|+||+|...-+|-.+ +|=|
T Consensus 367 y~G~W~PRkI~NPdyfEd~~p~~~-~pIs 394 (558)
T KOG0675|consen 367 YQGIWKPRKIPNPDYFEDDKPFTL-TPIS 394 (558)
T ss_pred ccCccccccCCCcccccccCcccc-cchh
Confidence 999999999999999999888633 4544
No 5
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes. It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....
Probab=100.00 E-value=1.8e-35 Score=300.18 Aligned_cols=124 Identities=48% Similarity=0.888 Sum_probs=69.6
Q ss_pred CCCCCcCCCCCCCCCCccc--cCccCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCC
Q 013908 221 IPEKTIPDPDDKKPEDWDE--RAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEEDG 298 (434)
Q Consensus 221 ~pp~~I~DP~d~KP~DWdd--~~~I~Dp~~~KPeDWde~~p~~I~Dp~a~KP~dW~e~ep~~I~DP~~~kP~dWd~~~~G 298 (434)
..+++|+||+|+||+|||+ +++|+||+|+||++|+|++|++|+||+|+||+|||+++...+.-|...+|.|.. .+||
T Consensus 216 ~d~~~I~Dp~~~KPedWdE~~p~~I~D~~a~kP~~W~edep~~IpDp~a~kP~dWdde~dGeWe~P~I~NP~C~~-~gCG 294 (367)
T PF00262_consen 216 DDREKIPDPNAKKPEDWDEDEPEFIPDPDAVKPEGWLEDEPEYIPDPEAKKPEDWDDEEDGEWEAPMIPNPKCKE-PGCG 294 (367)
T ss_dssp TTTSEEC-SSTT--TTTSSS--SEEE-TT----SS-BSSS-SEEE-TT--S-TT--CCCCSS----EEE-CGGTT-S-BS
T ss_pred hhhcccCCccccCcccccccCcccccCccccCCcchhhCCCcccCCCCCCCCCCCCccccCCccCCccCCCcccC-CCcc
Confidence 4799999999999999996 569999999999999999999999999999999998865555555555555566 7999
Q ss_pred CCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCcCCccCCCCCCCCCCCC
Q 013908 299 EWEAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQ 350 (434)
Q Consensus 299 ~W~~p~I~NP~~~~~~~cG~W~~P~I~NP~ykG~W~pp~I~NP~YkG~W~P~ 350 (434)
+|++|||.||+| .|+|++|||.||+|||+|+|++|+||+|..+-.|.
T Consensus 295 ~w~~p~i~Np~Y-----kG~W~pp~I~NP~YkG~W~p~~I~NP~y~~d~~p~ 341 (367)
T PF00262_consen 295 EWKPPMIKNPNY-----KGKWKPPMIPNPNYKGEWKPRKIPNPDYFEDPNPY 341 (367)
T ss_dssp S----EEE-TT-------SS----EEE-TT---S----EEE-TT--SSTTTT
T ss_pred ccccccccCccc-----cCCccccccCCccccccccccccCCCcccCCCCcc
Confidence 999999999999 59999999999999999999999999999886655
No 6
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.3e-23 Score=205.66 Aligned_cols=259 Identities=29% Similarity=0.477 Sum_probs=162.5
Q ss_pred cccCCCccCCCCcEEEEEEEEecCccccCCceeEecCcCCCCC--ccc-ccCCCCCeEEEEccCC--C--CCCCeEEEEE
Q 013908 84 KELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGW--VSK-EFDNESPYMIMFGPDK--C--GATNKVHFIL 156 (434)
Q Consensus 84 ~kl~~P~~~~~k~LVvQYeVk~q~~~~CGGaYiKLl~~~~~~~--~~~-~f~~~tpY~imFGPD~--C--g~~~kvh~i~ 156 (434)
-.|..-|.+.+..++-+..+++.+. |+|+|+++.+.-...- |.- +-+.+--|.+|++-=. . |.|--++|.+
T Consensus 21 Vyf~E~F~d~~~w~~rwv~skhk~~--~fG~f~ls~g~f~g~~~~DkGiqTsqd~rfya~sa~F~~FsnK~kTLv~q~tV 98 (406)
T KOG0674|consen 21 VYFKEEFLDEDGWENRWVQSKHKSR--DFGKFVLSAGKFYGDEEKDKGIQTSQDARFYAISAKFKPFSNKGKTLVIQFTV 98 (406)
T ss_pred hhhhhhhcCCCCceEEEEEeecccc--ccCceEeccccccCcccccccccccccceeeeeecccccccccCceEEEEEEe
Confidence 4577788888899999999999877 9999998876421110 110 1122234677765221 1 2233566666
Q ss_pred ecCCCCC--ccccccccCCCCCCCCCC----CCceEEEEEcCCCceEEEecCeeecccc----------cccc-----CC
Q 013908 157 KHKNPKS--GEYIEHHLKNPPSVPSDK----LTHVYTAILKPDNELRILIDGEEKQKAN----------FLAA-----DD 215 (434)
Q Consensus 157 ~~~np~~--g~~~e~~~~~~~~~~~d~----~tHlYTLii~pdnt~ei~IDg~~~~~g~----------l~~~-----~d 215 (434)
+|...+. |-|. +.+. +-.|. -..-|..+.-|| |.|-..++-. |+.. .|
T Consensus 99 kheQ~~dcgggyi-Kl~~----~d~Dq~~f~ges~y~iMfGPD------ICG~~tkKVhvil~ykg~nhlikK~i~Ck~D 167 (406)
T KOG0674|consen 99 KHEQKIDCGGGYI-KLFP----ADLDQTDFHGESPYNIMFGPD------ICGFGTKKVHVILNYKGKNHLIKKDIRCKDD 167 (406)
T ss_pred cccccccCCceeE-Eeee----cccchhhcCCCcccccccCCc------ccCCCCceEEEEEecccccchhccccccccC
Confidence 6644332 2222 1111 11111 112244444444 2332111111 1100 00
Q ss_pred -CCCCCCCCCCcCCCCCCCCCCccccCccCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013908 216 -FQPPLIPEKTIPDPDDKKPEDWDERAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDD 294 (434)
Q Consensus 216 -~~p~~~pp~~I~DP~d~KP~DWdd~~~I~Dp~~~KPeDWde~~p~~I~Dp~a~KP~dW~e~ep~~I~DP~~~kP~dWd~ 294 (434)
| +.+ =-.|-.|+++-----|... =.+++..+|||..+|.+|.||+|.||++| ++.++|+||+.+||++|+-
T Consensus 168 ~~-tHl--YTlIlRPd~TYeVkIDn~~---~esGsle~DWdll~~KKikdP~a~KPedW--Der~~I~DpeD~Kp~dwe~ 239 (406)
T KOG0674|consen 168 EL-THL--YTLILRPDATYEVKIDNQQ---VESGSLEDDWDLLPPKKIKDPDAKKPEDW--DEREYIPDPEDKKPQDWEK 239 (406)
T ss_pred Cc-cee--EEEEecCCCeeEEEEcccc---cccCccccccccccccccCCccccCcccc--hhhccCCCccccCcccccc
Confidence 0 000 0013334333222112111 13688899999999999999999999999 4589999999999999994
Q ss_pred cCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCcCCccCCCCCCCCCCCCCCCCCCCCCCC-CC-----CCCcc
Q 013908 295 EEDGEWEAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELD-KP-----DFEPI 368 (434)
Q Consensus 295 ~~~G~W~~p~I~NP~~~~~~~cG~W~~P~I~NP~ykG~W~pp~I~NP~YkG~W~P~~I~NP~y~~~~-~p-----~~~~i 368 (434)
+.+|++|.+ ++|..|+-+..|+|.+|||+||.|+|+|+|++|.||+|.+-| +| .|.+.
T Consensus 240 -------pehipDpda---------kKpedWddemDGEWe~P~i~nPey~gewkPkqi~np~yKg~w~hp~i~npey~~d 303 (406)
T KOG0674|consen 240 -------PEHIPDPDA---------KKPEDWDDEMDGEWEAPMIPNPEYKGEWKPKQIKNPAYKGKWIHPEIDNPEYPDD 303 (406)
T ss_pred -------ccccCCccc---------CCcccccccccCCcCCCCCCCccccCccCcccccCccccceeeccccCCCcCCCC
Confidence 448999998 678999999999999999999999999999999999999755 44 45555
Q ss_pred ceeEEEEeEeecCcEEeEeEe
Q 013908 369 AAVGIEIWTMQDGILFDNILI 389 (434)
Q Consensus 369 ~~ig~ElW~~~~~~~fdNi~v 389 (434)
..| ..|.||.+
T Consensus 304 ~~l----------y~~~ni~~ 314 (406)
T KOG0674|consen 304 PEL----------YHYENIGV 314 (406)
T ss_pred cce----------eeecccce
Confidence 545 57888854
No 7
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=52.53 E-value=1.7e+02 Score=26.11 Aligned_cols=142 Identities=11% Similarity=0.193 Sum_probs=67.6
Q ss_pred ccCcccCCCceeccCCCccceEEEeCCCCCCCCcee---ecCcccceeeecccCCCccCCCCcEEEEEEEEecCccccCC
Q 013908 37 SFDESFEGRWIVSQKDEYKGVWKHSKSEGHEDYGLL---VGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGG 113 (434)
Q Consensus 37 ~F~~~~~~rWv~S~~~~y~G~W~~~~~~~~~D~GLv---~~~~ar~yaIS~kl~~P~~~~~k~LVvQYeVk~q~~~~CGG 113 (434)
=|+....+.|.........+.|.++.+. |+ .......+.++. +.| ++++|+.++|+.. .|.
T Consensus 5 lf~g~~l~gW~~~~~~~~~~~~~v~dG~------l~~~~~~~~~~~~l~~~---~~~----~df~l~~d~k~~~---~~~ 68 (185)
T PF06439_consen 5 LFNGKDLDGWKIYGGGWFEGGWSVKDGV------LVSNGSSGSGGGYLYTD---KKF----SDFELEVDFKITP---GGN 68 (185)
T ss_dssp SS-SSCGTTEEETTSSSETTTEEEETTE------EE-GGGGESSS--EEES---SEB----SSEEEEEEEEE-T---T-E
T ss_pred eECCCCHHHCeeCCCCccccCcEeeCCE------EEecccCCCCcceEEEC---Ccc----ccEEEEEEEEECC---CCC
Confidence 3664445789888765556778776542 23 122222234443 222 4689999999832 223
Q ss_pred ceeEecCcCCCCCcccccCCCCCeEEEEccCCCCCCCeEEEEEecCCCCCccccc---ccc-CCCCCCCCCCCCceEEEE
Q 013908 114 AYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIE---HHL-KNPPSVPSDKLTHVYTAI 189 (434)
Q Consensus 114 aYiKLl~~~~~~~~~~~f~~~tpY~imFGPD~Cg~~~kvh~i~~~~np~~g~~~e---~~~-~~~~~~~~d~~tHlYTLi 189 (434)
+-|-+.... .........-|++-+.++.++ ....-.+|.+.. ... ..........--|=|+++
T Consensus 69 sGi~~r~~~----~~~~~~~~~gy~~~i~~~~~~---------~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~W~~~~I~ 135 (185)
T PF06439_consen 69 SGIFFRAQS----PGDGQDWNNGYEFQIDNSGGG---------TGLPNSTGSLYDEPPWQLEPSVNVAIPPGEWNTVRIV 135 (185)
T ss_dssp EEEEEEESS----ECCSSGGGTSEEEEEE-TTTC---------STTTTSTTSBTTTB-TCB-SSS--S--TTSEEEEEEE
T ss_pred eEEEEEecc----ccCCCCcceEEEEEEECCCCc---------cCCCCccceEEEeccccccccccccCCCCceEEEEEE
Confidence 334433210 001111223477777777765 111122333321 001 111111222344555666
Q ss_pred EcCCCceEEEecCeeeccc
Q 013908 190 LKPDNELRILIDGEEKQKA 208 (434)
Q Consensus 190 i~pdnt~ei~IDg~~~~~g 208 (434)
++ .+++.+.|||..+..-
T Consensus 136 ~~-g~~i~v~vnG~~v~~~ 153 (185)
T PF06439_consen 136 VK-GNRITVWVNGKPVADF 153 (185)
T ss_dssp EE-TTEEEEEETTEEEEEE
T ss_pred EE-CCEEEEEECCEEEEEE
Confidence 63 6789999999987655
No 8
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=41.77 E-value=14 Score=32.80 Aligned_cols=7 Identities=14% Similarity=-0.073 Sum_probs=3.6
Q ss_pred chhHHHH
Q 013908 5 MAVSLRF 11 (434)
Q Consensus 5 ~~~~~~~ 11 (434)
||++|++
T Consensus 1 RW~l~~i 7 (130)
T PF12273_consen 1 RWVLFAI 7 (130)
T ss_pred CeeeHHH
Confidence 4555544
No 9
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=37.66 E-value=27 Score=30.08 Aligned_cols=20 Identities=30% Similarity=0.135 Sum_probs=8.6
Q ss_pred CcccchhHHHHHHHHHHHhhh
Q 013908 1 MVQRMAVSLRFALLLFAAFVS 21 (434)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (434)
|- +|..+|+.++|.++++||
T Consensus 1 Ma-SK~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALLLIS 20 (95)
T ss_pred Cc-hhHHHHHHHHHHHHHHHH
Confidence 55 555444444333333333
No 10
>PF13117 Cag12: Cag pathogenicity island protein Cag12
Probab=36.50 E-value=7.4 Score=34.62 Aligned_cols=49 Identities=18% Similarity=0.192 Sum_probs=30.0
Q ss_pred Cccc-eE--EEeCCCCCCCCceeecCcccceeeecccCCCccCCCCcEEEEEE
Q 013908 53 EYKG-VW--KHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYE 102 (434)
Q Consensus 53 ~y~G-~W--~~~~~~~~~D~GLv~~~~ar~yaIS~kl~~P~~~~~k~LVvQYe 102 (434)
.-.| .| .+..... +|..+--.+.+++||++|.=..-+...+.+++++|.
T Consensus 46 ~~~~~~W~y~~~~~~~-~~~~~~~~~~~~~yalAH~~~iIv~~~~~~~~~~~K 97 (113)
T PF13117_consen 46 FVNGQNWTYSIVLPNF-KDRLIDPEQIVVFYALAHSAKIIVLTGDGNLFFQYK 97 (113)
T ss_pred cccCCCceEEEEecCC-cccccCchhheEeeeeeccccEEEEcCCHHHHHHHH
Confidence 4468 89 4554443 444444455688999999876655555555555443
No 11
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=35.33 E-value=52 Score=28.09 Aligned_cols=27 Identities=30% Similarity=0.572 Sum_probs=23.3
Q ss_pred CCcEEEEEEEEecCccccCCceeEecCc
Q 013908 94 DGTVVLQYEVRLQNGLECGGAYLKYLRP 121 (434)
Q Consensus 94 ~k~LVvQYeVk~q~~~~CGGaYiKLl~~ 121 (434)
.|..|||=.|+ ..+--.||||+.||..
T Consensus 5 ~ke~VItG~V~-~~G~Pv~gAyVRLLD~ 31 (85)
T PF07210_consen 5 EKETVITGRVT-RDGEPVGGAYVRLLDS 31 (85)
T ss_pred cceEEEEEEEe-cCCcCCCCeEEEEEcC
Confidence 57799999999 7777779999999964
No 12
>PRK14758 hypothetical protein; Provisional
Probab=30.76 E-value=49 Score=22.51 Aligned_cols=14 Identities=29% Similarity=0.441 Sum_probs=8.7
Q ss_pred CcccchhHHHHHHH
Q 013908 1 MVQRMAVSLRFALL 14 (434)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (434)
|++|-|.-+|++++
T Consensus 1 Mv~RYrFEliLivl 14 (27)
T PRK14758 1 MVGRYRFEFILIIL 14 (27)
T ss_pred CchHHHHHHHHHHH
Confidence 88886665555333
No 13
>PHA02291 hypothetical protein
Probab=29.72 E-value=50 Score=29.59 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=19.1
Q ss_pred CcccchhHHHHHHHHHHHhhhccc
Q 013908 1 MVQRMAVSLRFALLLFAAFVSFQL 24 (434)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (434)
|...+|+.+|++.+||++.++..+
T Consensus 1 MS~K~~iFYiL~~~VL~~si~sY~ 24 (132)
T PHA02291 1 MSRKASIFYILVVIVLAFSISSYY 24 (132)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHh
Confidence 677788988988888888777664
No 14
>PF14083 PGDYG: PGDYG protein
Probab=29.14 E-value=63 Score=28.24 Aligned_cols=58 Identities=24% Similarity=0.582 Sum_probs=32.7
Q ss_pred cCCCceeccCCCccceEEEeCCC-CCCCCceeecCcccceeeecccCCCccCCC-----------CcEEEEEE
Q 013908 42 FEGRWIVSQKDEYKGVWKHSKSE-GHEDYGLLVGEPAKKYAIVKELDEPLSLKD-----------GTVVLQYE 102 (434)
Q Consensus 42 ~~~rWv~S~~~~y~G~W~~~~~~-~~~D~GLv~~~~ar~yaIS~kl~~P~~~~~-----------k~LVvQYe 102 (434)
..+||+.|... +..+..-.... .+++.|...... --.+++.++.||+..- .+-++||.
T Consensus 16 tGdRWvVsr~r-Fd~ky~~~~~~l~~G~~g~Y~nrp--~vvla~~m~~~f~iarS~~gdvl~g~agDw~mqya 85 (102)
T PF14083_consen 16 TGDRWVVSRER-FDAKYVPARPSLAHGQPGAYRNRP--VVVLARQMDEPFSIARSAGGDVLHGKAGDWLMQYA 85 (102)
T ss_pred CCCeEEeeHHH-cccccccccccccCCCCcceecCC--eeeeccccCcchhhhhhcCCCccccCCcceEEEeC
Confidence 45899999853 22222222222 245555554444 2367788888887632 25677775
No 15
>PF15240 Pro-rich: Proline-rich
Probab=23.77 E-value=53 Score=31.58 Aligned_cols=18 Identities=22% Similarity=0.104 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHhhhccc
Q 013908 7 VSLRFALLLFAAFVSFQL 24 (434)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~ 24 (434)
||+|||+++||+|-|-++
T Consensus 1 MLlVLLSvALLALSSAQ~ 18 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQS 18 (179)
T ss_pred ChhHHHHHHHHHhhhccc
Confidence 566766666666655443
No 16
>COG5023 Tubulin [Cytoskeleton]
Probab=21.36 E-value=41 Score=36.03 Aligned_cols=48 Identities=21% Similarity=0.393 Sum_probs=25.6
Q ss_pred eEeEeeCCHHHHHHHHHhhcCCc-chHHHHhHHHHHHhccCCCCCcceec
Q 013908 385 DNILISKDEKVAESYRASAWKPK-FDVEKEKLKAEEAAAGSDGLAGFQVM 433 (434)
Q Consensus 385 dNi~v~~d~~~A~~~~~~t~~~k-~~~e~~~~~~~~~~~~~~~~~~~~~~ 433 (434)
+||+++.+- .+..||+-.+..- .-.+.--..-...|.+.|||+|||+.
T Consensus 88 en~i~gkeg-AgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~ 136 (443)
T COG5023 88 ENIIFGKEG-AGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLL 136 (443)
T ss_pred hheeecccc-ccccccccccchhHHHHHHHHHHHHHHhhcCccccceeee
Confidence 577777665 2322332221111 11112222334678899999999984
No 17
>TIGR02024 FtcD glutamate formiminotransferase. This model covers enzymes from metazoa as well as gram-positive bacteria and archaea. In humans, deficiency of this enzyme results in a disease phenotype. The crystal structure of the enzyme has been studied in the context of the catalytic mechanism.
Probab=21.26 E-value=2.6e+02 Score=28.97 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=30.6
Q ss_pred cceeEEEEeEeecCcEEeEeEe-eCCHHHHHHHHHhhcCCcchHHHHhHHHHHHhccCCCCCcceec
Q 013908 368 IAAVGIEIWTMQDGILFDNILI-SKDEKVAESYRASAWKPKFDVEKEKLKAEEAAAGSDGLAGFQVM 433 (434)
Q Consensus 368 i~~ig~ElW~~~~~~~fdNi~v-~~d~~~A~~~~~~t~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~ 433 (434)
.+.|| ...-.+=-||-| |.|++.|++++... -..++||.+.|-|
T Consensus 173 at~vG-----Ar~~liayNV~L~t~d~~~a~~IAk~v-----------------R~~gGGL~~VqAm 217 (298)
T TIGR02024 173 ATATG-----ARKFLIAFNVNLGTSNLEIAKKIAKAI-----------------RFQGGGLRFVKAI 217 (298)
T ss_pred eEEEe-----cCCceEEEEEeecCCCHHHHHHHHHHh-----------------hhcCCCccceEEe
Confidence 45555 344466679988 99999999888543 2235688888766
Done!