Query 013909
Match_columns 434
No_of_seqs 325 out of 2455
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 08:36:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013909.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013909hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 2.1E-46 4.6E-51 377.4 30.9 281 80-399 285-567 (571)
2 KOG4441 Proteins containing BT 100.0 7E-45 1.5E-49 366.5 28.1 304 86-430 247-552 (571)
3 PLN02153 epithiospecifier prot 100.0 3.3E-43 7.2E-48 338.2 33.8 297 104-421 4-334 (341)
4 PHA02713 hypothetical protein; 100.0 1.1E-43 2.4E-48 359.4 28.0 251 97-387 272-542 (557)
5 PLN02193 nitrile-specifier pro 100.0 1.6E-42 3.6E-47 345.3 35.0 287 107-430 151-465 (470)
6 TIGR03548 mutarot_permut cycli 100.0 8.9E-42 1.9E-46 326.0 31.7 274 118-421 3-323 (323)
7 TIGR03547 muta_rot_YjhT mutatr 100.0 5.2E-42 1.1E-46 331.0 30.3 284 112-424 1-344 (346)
8 PHA02713 hypothetical protein; 100.0 1.9E-41 4.2E-46 343.1 30.1 278 130-430 259-539 (557)
9 PRK14131 N-acetylneuraminic ac 100.0 5.9E-40 1.3E-44 319.0 29.4 287 108-423 18-365 (376)
10 PLN02153 epithiospecifier prot 100.0 3.7E-39 8.1E-44 310.1 32.6 296 58-378 4-339 (341)
11 PLN02193 nitrile-specifier pro 100.0 3.3E-39 7.1E-44 321.6 33.2 316 31-379 119-469 (470)
12 PHA03098 kelch-like protein; P 100.0 3.1E-38 6.8E-43 321.9 30.3 261 98-394 265-527 (534)
13 KOG4693 Uncharacterized conser 100.0 2.4E-39 5.2E-44 279.0 16.2 281 25-358 16-313 (392)
14 TIGR03547 muta_rot_YjhT mutatr 100.0 1E-37 2.3E-42 301.0 29.3 265 97-376 29-344 (346)
15 PRK14131 N-acetylneuraminic ac 100.0 6.1E-37 1.3E-41 297.9 29.3 305 62-384 18-374 (376)
16 KOG4693 Uncharacterized conser 100.0 5.3E-37 1.1E-41 264.6 22.6 280 108-411 3-312 (392)
17 TIGR03548 mutarot_permut cycli 100.0 2E-37 4.3E-42 296.0 22.0 247 98-360 40-316 (323)
18 PHA02790 Kelch-like protein; P 100.0 4.2E-36 9.2E-41 300.1 29.2 210 124-385 267-477 (480)
19 PHA03098 kelch-like protein; P 100.0 1.4E-35 3E-40 302.5 26.8 265 129-430 251-517 (534)
20 PHA02790 Kelch-like protein; P 100.0 1.6E-33 3.5E-38 281.5 25.4 208 174-430 267-476 (480)
21 KOG0379 Kelch repeat-containin 100.0 2.1E-29 4.6E-34 250.5 26.1 267 113-411 55-342 (482)
22 KOG1230 Protein containing rep 100.0 3.4E-29 7.3E-34 228.4 19.3 258 112-385 60-347 (521)
23 KOG4152 Host cell transcriptio 100.0 1.9E-28 4E-33 228.7 20.2 277 108-413 18-344 (830)
24 KOG0379 Kelch repeat-containin 100.0 2.3E-27 5E-32 236.0 24.6 217 165-413 57-287 (482)
25 KOG4152 Host cell transcriptio 100.0 5.5E-27 1.2E-31 218.9 18.4 281 60-360 16-345 (830)
26 KOG1230 Protein containing rep 99.9 1.9E-26 4E-31 210.6 21.0 307 93-418 94-460 (521)
27 COG3055 Uncharacterized protei 99.9 8E-25 1.7E-29 197.5 20.5 297 110-432 28-378 (381)
28 COG3055 Uncharacterized protei 99.8 2.8E-19 6E-24 161.9 20.7 268 98-379 59-375 (381)
29 KOG2437 Muskelin [Signal trans 99.7 8.8E-18 1.9E-22 157.4 2.6 301 106-432 238-611 (723)
30 PF13964 Kelch_6: Kelch motif 99.4 1.8E-12 3.8E-17 87.2 6.4 50 168-219 1-50 (50)
31 KOG2437 Muskelin [Signal trans 99.3 8.3E-13 1.8E-17 124.4 3.4 185 154-360 238-460 (723)
32 PF13964 Kelch_6: Kelch motif 99.3 5.4E-12 1.2E-16 84.8 6.4 49 118-166 1-49 (50)
33 PF01344 Kelch_1: Kelch motif; 99.2 6.1E-11 1.3E-15 78.6 5.2 47 118-164 1-47 (47)
34 PF01344 Kelch_1: Kelch motif; 99.1 1.2E-10 2.5E-15 77.2 4.3 47 168-216 1-47 (47)
35 PF13415 Kelch_3: Galactose ox 99.1 3.8E-10 8.3E-15 75.3 5.9 49 178-227 1-49 (49)
36 PF07646 Kelch_2: Kelch motif; 99.0 6.8E-10 1.5E-14 74.1 6.5 49 168-216 1-49 (49)
37 PF13418 Kelch_4: Galactose ox 99.0 3.8E-10 8.2E-15 75.4 4.4 47 118-164 1-48 (49)
38 PF07646 Kelch_2: Kelch motif; 99.0 1.2E-09 2.6E-14 72.9 6.4 47 118-164 1-49 (49)
39 PF13415 Kelch_3: Galactose ox 99.0 1.4E-09 3E-14 72.6 6.4 48 128-177 1-49 (49)
40 PF13418 Kelch_4: Galactose ox 98.9 1.3E-09 2.8E-14 72.8 4.2 48 168-217 1-49 (49)
41 smart00612 Kelch Kelch domain. 98.8 6.6E-09 1.4E-13 68.6 5.0 47 180-229 1-47 (47)
42 PF07250 Glyoxal_oxid_N: Glyox 98.8 8.1E-07 1.8E-11 79.7 17.7 152 146-334 47-210 (243)
43 smart00612 Kelch Kelch domain. 98.7 2.8E-08 6.1E-13 65.5 5.2 47 130-179 1-47 (47)
44 PLN02772 guanylate kinase 98.7 1.2E-07 2.7E-12 90.1 11.1 86 116-206 22-109 (398)
45 PF13854 Kelch_5: Kelch motif 98.7 6.5E-08 1.4E-12 62.0 5.6 41 115-155 1-42 (42)
46 PF13854 Kelch_5: Kelch motif 98.5 2.8E-07 6.1E-12 59.0 5.3 41 166-207 2-42 (42)
47 PLN02772 guanylate kinase 98.4 1.3E-06 2.8E-11 83.3 10.5 79 168-252 24-106 (398)
48 PF03089 RAG2: Recombination a 98.3 0.0002 4.3E-09 64.1 20.6 161 130-294 40-231 (337)
49 PF07250 Glyoxal_oxid_N: Glyox 98.3 2.6E-05 5.6E-10 70.1 14.8 155 197-391 46-211 (243)
50 TIGR01640 F_box_assoc_1 F-box 98.3 0.00018 3.8E-09 65.2 20.5 197 146-380 15-230 (230)
51 TIGR01640 F_box_assoc_1 F-box 98.3 0.00027 5.8E-09 64.1 21.1 182 98-291 15-216 (230)
52 PRK11138 outer membrane biogen 98.2 0.00096 2.1E-08 65.7 25.1 235 97-408 130-383 (394)
53 TIGR03300 assembly_YfgL outer 98.0 0.0098 2.1E-07 58.1 27.1 238 97-409 115-369 (377)
54 PF03089 RAG2: Recombination a 97.7 0.00028 6.1E-09 63.2 10.2 98 329-426 81-190 (337)
55 PRK11138 outer membrane biogen 97.7 0.074 1.6E-06 52.4 30.6 234 98-408 80-342 (394)
56 PF07893 DUF1668: Protein of u 97.6 0.0085 1.8E-07 57.6 19.1 130 175-335 73-220 (342)
57 PF13360 PQQ_2: PQQ-like domai 97.2 0.16 3.4E-06 45.8 23.5 208 98-381 4-233 (238)
58 TIGR03300 assembly_YfgL outer 97.1 0.28 6E-06 47.9 24.2 211 122-408 59-286 (377)
59 PRK13684 Ycf48-like protein; P 96.3 1.1 2.4E-05 42.9 26.8 244 98-409 67-321 (334)
60 PF13360 PQQ_2: PQQ-like domai 96.3 0.79 1.7E-05 41.2 19.4 125 95-238 44-183 (238)
61 PF08450 SGL: SMP-30/Gluconola 96.1 0.55 1.2E-05 42.7 17.3 213 128-408 11-244 (246)
62 PF12768 Rax2: Cortical protei 96.1 0.1 2.3E-06 48.3 12.2 121 132-268 2-130 (281)
63 PF07893 DUF1668: Protein of u 96.0 0.18 4E-06 48.4 13.8 109 98-214 87-216 (342)
64 PRK13684 Ycf48-like protein; P 95.9 1.7 3.7E-05 41.6 20.9 204 99-356 111-322 (334)
65 KOG2055 WD40 repeat protein [G 95.6 0.75 1.6E-05 44.5 15.5 174 128-356 224-407 (514)
66 PF12768 Rax2: Cortical protei 95.4 0.7 1.5E-05 42.9 14.7 118 184-331 3-130 (281)
67 PF08450 SGL: SMP-30/Gluconola 95.3 2 4.3E-05 39.0 17.5 104 96-212 21-129 (246)
68 smart00284 OLF Olfactomedin-li 95.2 0.96 2.1E-05 41.1 14.3 141 128-290 34-193 (255)
69 KOG0310 Conserved WD40 repeat- 95.1 1.8 3.8E-05 42.2 16.6 103 128-251 79-183 (487)
70 PF02191 OLF: Olfactomedin-lik 94.5 1.2 2.6E-05 40.6 13.4 184 128-354 30-237 (250)
71 PF14870 PSII_BNR: Photosynthe 93.7 6.2 0.00013 37.1 18.4 204 99-356 83-295 (302)
72 PF12217 End_beta_propel: Cata 93.6 5.4 0.00012 36.0 19.9 206 125-357 22-259 (367)
73 KOG2055 WD40 repeat protein [G 93.2 2 4.3E-05 41.7 12.5 135 94-250 277-415 (514)
74 cd00094 HX Hemopexin-like repe 93.2 5.2 0.00011 34.9 14.7 23 345-381 156-178 (194)
75 TIGR03866 PQQ_ABC_repeats PQQ- 92.9 7.6 0.00017 35.7 18.5 64 130-211 2-67 (300)
76 PLN00033 photosystem II stabil 92.8 11 0.00023 37.1 24.2 243 99-409 112-389 (398)
77 cd00094 HX Hemopexin-like repe 92.5 6.5 0.00014 34.3 14.3 93 124-237 12-119 (194)
78 PRK04792 tolB translocation pr 92.1 14 0.00031 37.0 23.2 187 145-384 242-430 (448)
79 PF03178 CPSF_A: CPSF A subuni 92.0 2 4.4E-05 40.8 11.4 140 179-355 42-190 (321)
80 PRK04922 tolB translocation pr 91.7 15 0.00033 36.5 23.2 184 145-381 228-414 (433)
81 PRK11028 6-phosphogluconolacto 91.4 13 0.00028 35.3 23.6 94 98-207 58-158 (330)
82 PRK05137 tolB translocation pr 90.7 19 0.00041 35.9 23.6 193 144-386 181-374 (435)
83 PF10282 Lactonase: Lactonase, 90.5 17 0.00037 35.0 16.6 81 147-234 17-104 (345)
84 PF09910 DUF2139: Uncharacteri 90.4 15 0.00032 34.0 19.2 164 157-353 25-219 (339)
85 TIGR02800 propeller_TolB tol-p 90.0 21 0.00045 35.1 21.6 77 128-215 200-276 (417)
86 PF02191 OLF: Olfactomedin-lik 89.8 6.9 0.00015 35.7 12.0 147 77-234 70-236 (250)
87 cd00216 PQQ_DH Dehydrogenases 89.5 26 0.00056 35.6 26.5 76 315-407 366-454 (488)
88 PF05096 Glu_cyclase_2: Glutam 89.4 5.1 0.00011 36.6 10.7 103 170-292 46-149 (264)
89 cd00216 PQQ_DH Dehydrogenases 89.3 27 0.00058 35.4 24.7 108 97-212 71-192 (488)
90 cd00200 WD40 WD40 domain, foun 89.1 16 0.00034 32.5 24.2 64 128-208 62-126 (289)
91 TIGR03075 PQQ_enz_alc_DH PQQ-d 88.5 32 0.00069 35.3 22.3 98 122-235 63-172 (527)
92 PLN00181 protein SPA1-RELATED; 88.4 41 0.00089 36.5 19.5 58 179-251 545-605 (793)
93 PRK00178 tolB translocation pr 88.4 28 0.00061 34.5 23.2 148 197-387 223-372 (430)
94 PRK05137 tolB translocation pr 88.2 29 0.00063 34.5 23.8 64 145-216 226-289 (435)
95 PF05096 Glu_cyclase_2: Glutam 88.1 5.1 0.00011 36.6 9.7 96 127-238 54-149 (264)
96 PRK00178 tolB translocation pr 88.0 30 0.00064 34.3 23.5 184 145-380 223-408 (430)
97 COG4257 Vgb Streptogramin lyas 87.8 9.9 0.00022 34.8 11.1 119 79-213 192-313 (353)
98 PRK04922 tolB translocation pr 87.7 31 0.00068 34.3 22.4 149 197-387 228-377 (433)
99 PF08268 FBA_3: F-box associat 87.7 6.3 0.00014 31.8 9.4 83 175-266 2-87 (129)
100 TIGR02800 propeller_TolB tol-p 87.4 31 0.00067 33.9 21.8 147 197-386 214-362 (417)
101 PF03178 CPSF_A: CPSF A subuni 87.0 14 0.0003 35.1 12.8 110 262-409 78-190 (321)
102 KOG0296 Angio-associated migra 86.1 32 0.00069 32.7 14.2 151 172-381 68-223 (399)
103 KOG0310 Conserved WD40 repeat- 85.5 39 0.00086 33.3 16.4 175 127-358 121-301 (487)
104 cd00200 WD40 WD40 domain, foun 85.3 26 0.00057 31.1 20.4 63 128-207 20-83 (289)
105 PF13088 BNR_2: BNR repeat-lik 85.2 19 0.00041 33.1 12.5 221 105-352 28-275 (275)
106 TIGR03075 PQQ_enz_alc_DH PQQ-d 85.0 22 0.00047 36.5 13.7 121 223-384 64-197 (527)
107 TIGR03866 PQQ_ABC_repeats PQQ- 84.5 32 0.0007 31.4 24.0 62 129-208 43-106 (300)
108 COG1520 FOG: WD40-like repeat 84.0 43 0.00093 32.5 21.7 93 124-235 64-160 (370)
109 PRK04792 tolB translocation pr 83.7 51 0.0011 33.0 23.4 192 145-386 198-390 (448)
110 PF10282 Lactonase: Lactonase, 83.6 43 0.00093 32.1 19.1 99 98-207 16-119 (345)
111 PLN00181 protein SPA1-RELATED; 82.9 75 0.0016 34.5 18.1 63 129-208 545-609 (793)
112 PF13859 BNR_3: BNR repeat-lik 82.8 33 0.00072 32.4 12.9 199 172-389 2-217 (310)
113 PF08268 FBA_3: F-box associat 82.7 16 0.00036 29.3 9.7 83 126-212 3-87 (129)
114 PF14870 PSII_BNR: Photosynthe 81.9 46 0.001 31.3 24.1 245 98-409 38-294 (302)
115 COG1520 FOG: WD40-like repeat 81.7 53 0.0011 31.8 22.6 118 98-234 79-203 (370)
116 PRK02889 tolB translocation pr 81.4 60 0.0013 32.2 21.3 191 145-386 176-368 (427)
117 PRK03629 tolB translocation pr 80.5 64 0.0014 32.1 23.1 205 131-387 167-372 (429)
118 PLN03215 ascorbic acid mannose 79.2 52 0.0011 32.0 12.9 106 260-390 189-306 (373)
119 PRK02889 tolB translocation pr 79.2 70 0.0015 31.7 23.4 62 145-214 220-281 (427)
120 PRK11028 6-phosphogluconolacto 79.0 59 0.0013 30.7 24.1 133 98-251 13-155 (330)
121 KOG0278 Serine/threonine kinas 78.3 36 0.00078 30.8 10.6 138 197-385 165-308 (334)
122 smart00284 OLF Olfactomedin-li 77.2 59 0.0013 29.7 16.6 181 178-407 34-241 (255)
123 PF06433 Me-amine-dh_H: Methyl 76.5 7.1 0.00015 37.1 6.1 105 98-211 18-132 (342)
124 PRK03629 tolB translocation pr 75.5 90 0.002 31.0 24.8 189 145-385 223-413 (429)
125 PF14583 Pectate_lyase22: Olig 74.2 31 0.00068 33.5 9.9 80 128-220 46-125 (386)
126 PF13088 BNR_2: BNR repeat-lik 71.5 82 0.0018 28.8 17.4 218 154-406 29-275 (275)
127 PRK04043 tolB translocation pr 69.8 1.2E+02 0.0026 30.1 19.4 104 98-214 214-318 (419)
128 COG4880 Secreted protein conta 69.1 1.2E+02 0.0026 29.8 12.9 77 121-206 379-458 (603)
129 PF02897 Peptidase_S9_N: Proly 68.8 1.2E+02 0.0026 29.7 15.2 241 98-385 151-411 (414)
130 PRK02888 nitrous-oxide reducta 66.7 1.4E+02 0.003 31.2 13.1 53 317-381 298-354 (635)
131 PF07433 DUF1513: Protein of u 65.6 60 0.0013 30.5 9.6 115 268-414 2-123 (305)
132 KOG1332 Vesicle coat complex C 63.6 59 0.0013 29.4 8.6 77 113-214 217-296 (299)
133 TIGR02658 TTQ_MADH_Hv methylam 62.8 1.5E+02 0.0033 28.6 23.4 104 98-211 28-142 (352)
134 PLN03215 ascorbic acid mannose 61.8 1.4E+02 0.0031 29.0 11.7 100 106-215 189-304 (373)
135 KOG2048 WD40 repeat protein [G 60.3 2.2E+02 0.0047 29.7 25.2 135 37-188 169-310 (691)
136 COG3386 Gluconolactonase [Carb 59.5 1.6E+02 0.0035 27.8 18.1 64 147-212 87-157 (307)
137 PRK04043 tolB translocation pr 59.4 1.9E+02 0.0041 28.7 21.1 193 146-385 214-407 (419)
138 KOG2321 WD40 repeat protein [G 59.3 1.2E+02 0.0026 31.0 10.7 59 178-250 145-203 (703)
139 PF13859 BNR_3: BNR repeat-lik 58.3 1.7E+02 0.0037 27.7 17.3 185 122-332 2-216 (310)
140 KOG0649 WD40 repeat protein [G 57.7 1.5E+02 0.0032 26.9 17.2 116 156-292 100-227 (325)
141 TIGR03074 PQQ_membr_DH membran 56.7 2.9E+02 0.0062 29.9 14.2 42 340-384 309-352 (764)
142 PRK10115 protease 2; Provision 56.3 2.8E+02 0.006 29.6 23.8 195 145-386 199-402 (686)
143 PF06433 Me-amine-dh_H: Methyl 55.7 22 0.00047 33.9 4.9 60 95-159 65-132 (342)
144 KOG2048 WD40 repeat protein [G 54.9 2.7E+02 0.0058 29.0 21.6 250 52-358 48-311 (691)
145 PTZ00421 coronin; Provisional 54.5 2.5E+02 0.0054 28.6 19.6 102 128-251 87-197 (493)
146 PTZ00421 coronin; Provisional 54.0 2.6E+02 0.0055 28.5 16.8 13 282-294 179-191 (493)
147 KOG0649 WD40 repeat protein [G 54.0 1.7E+02 0.0037 26.5 14.3 129 128-291 126-264 (325)
148 TIGR03074 PQQ_membr_DH membran 53.0 3.3E+02 0.0072 29.5 15.6 35 122-163 188-224 (764)
149 PF12217 End_beta_propel: Cata 52.8 1.9E+02 0.004 26.5 11.9 208 174-411 21-259 (367)
150 PLN00033 photosystem II stabil 52.0 2.5E+02 0.0053 27.7 26.0 115 106-236 74-197 (398)
151 KOG0322 G-protein beta subunit 50.4 15 0.00033 33.4 2.8 36 119-165 251-288 (323)
152 TIGR02658 TTQ_MADH_Hv methylam 49.3 2.5E+02 0.0055 27.1 20.8 104 51-159 27-142 (352)
153 KOG2445 Nuclear pore complex c 48.9 2.3E+02 0.0051 26.6 11.5 36 349-389 185-220 (361)
154 COG4946 Uncharacterized protei 48.3 3E+02 0.0064 27.6 19.2 188 145-385 107-302 (668)
155 KOG0296 Angio-associated migra 46.9 2.7E+02 0.0059 26.7 12.9 55 228-294 75-129 (399)
156 COG4946 Uncharacterized protei 46.1 3.2E+02 0.007 27.4 19.8 97 98-213 207-303 (668)
157 PF13570 PQQ_3: PQQ-like domai 45.7 44 0.00096 20.3 3.8 25 173-206 16-40 (40)
158 KOG0281 Beta-TrCP (transducin 43.6 1.2E+02 0.0027 28.8 7.6 58 275-359 362-421 (499)
159 KOG1332 Vesicle coat complex C 43.5 1.1E+02 0.0024 27.8 7.0 103 180-331 176-296 (299)
160 KOG0266 WD40 repeat-containing 41.9 3.7E+02 0.0081 26.9 16.6 89 146-251 226-317 (456)
161 PF02239 Cytochrom_D1: Cytochr 41.1 1.9E+02 0.0042 28.1 9.2 76 145-235 16-95 (369)
162 COG4257 Vgb Streptogramin lyas 40.1 3.1E+02 0.0068 25.5 18.2 219 98-385 84-312 (353)
163 KOG0289 mRNA splicing factor [ 38.7 4E+02 0.0087 26.4 12.8 122 170-335 349-475 (506)
164 KOG3545 Olfactomedin and relat 38.6 3.1E+02 0.0066 25.0 15.5 184 128-354 30-236 (249)
165 KOG0289 mRNA splicing factor [ 37.4 4.2E+02 0.0091 26.2 12.4 53 347-411 443-497 (506)
166 PRK01742 tolB translocation pr 37.0 4.3E+02 0.0092 26.2 22.2 79 128-216 168-247 (429)
167 PF07433 DUF1513: Protein of u 36.6 3.7E+02 0.008 25.4 20.9 111 116-237 2-120 (305)
168 PF08662 eIF2A: Eukaryotic tra 36.1 2.6E+02 0.0057 24.1 8.5 34 344-388 108-141 (194)
169 PF03022 MRJP: Major royal jel 34.1 3.9E+02 0.0085 24.9 11.9 98 128-233 11-125 (287)
170 KOG0299 U3 snoRNP-associated p 33.7 4.9E+02 0.011 25.9 17.2 132 124-294 209-349 (479)
171 PF02897 Peptidase_S9_N: Proly 33.1 4.7E+02 0.01 25.5 13.4 84 144-235 251-343 (414)
172 KOG0316 Conserved WD40 repeat- 32.2 3.9E+02 0.0084 24.2 16.4 102 127-251 69-172 (307)
173 PLN02919 haloacid dehalogenase 30.1 8.6E+02 0.019 27.6 25.9 71 128-212 579-661 (1057)
174 COG3823 Glutamine cyclotransfe 28.4 3E+02 0.0064 24.5 7.1 71 328-408 36-107 (262)
175 PRK01742 tolB translocation pr 28.2 5.9E+02 0.013 25.1 23.5 76 128-214 214-289 (429)
176 COG4447 Uncharacterized protei 27.9 5E+02 0.011 24.2 10.7 198 155-409 32-233 (339)
177 PF05262 Borrelia_P83: Borreli 27.7 4.2E+02 0.0092 26.9 9.1 85 142-234 372-456 (489)
178 KOG1036 Mitotic spindle checkp 27.4 5.3E+02 0.011 24.3 12.7 64 126-206 62-125 (323)
179 KOG0772 Uncharacterized conser 26.9 6.9E+02 0.015 25.5 18.9 202 128-391 226-456 (641)
180 KOG2445 Nuclear pore complex c 26.7 5.5E+02 0.012 24.3 9.2 105 104-215 97-219 (361)
181 PF08662 eIF2A: Eukaryotic tra 26.6 4.2E+02 0.0091 22.9 9.6 71 128-216 71-142 (194)
182 PF09910 DUF2139: Uncharacteri 26.0 5.6E+02 0.012 24.1 10.8 94 128-234 117-219 (339)
183 KOG0647 mRNA export protein (c 25.6 5.7E+02 0.012 24.1 9.5 166 128-321 83-255 (347)
184 PF14830 Haemocyan_bet_s: Haem 24.9 62 0.0014 24.9 2.2 29 126-154 34-62 (103)
185 KOG0646 WD40 repeat protein [G 24.3 7.2E+02 0.016 24.8 14.3 58 122-189 85-145 (476)
186 KOG0646 WD40 repeat protein [G 24.0 5.3E+02 0.011 25.7 8.6 60 221-294 84-146 (476)
187 KOG0306 WD40-repeat-containing 23.8 5.8E+02 0.013 27.2 9.3 57 224-294 379-435 (888)
188 COG2706 3-carboxymuconate cycl 23.7 6.6E+02 0.014 24.1 18.4 62 316-387 168-232 (346)
189 KOG2321 WD40 repeat protein [G 22.8 1.5E+02 0.0033 30.3 4.9 65 333-412 131-197 (703)
190 KOG1036 Mitotic spindle checkp 22.6 6.5E+02 0.014 23.7 17.9 92 95-208 73-166 (323)
191 PF15525 DUF4652: Domain of un 22.5 5.2E+02 0.011 22.5 10.3 87 136-226 79-169 (200)
192 PF07734 FBA_1: F-box associat 21.7 4.7E+02 0.01 21.7 9.6 85 175-267 2-91 (164)
193 PLN02919 haloacid dehalogenase 20.2 1.3E+03 0.028 26.2 22.8 70 128-211 635-719 (1057)
194 KOG1898 Splicing factor 3b, su 20.2 1.3E+03 0.027 26.1 15.3 32 371-402 999-1030(1205)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.1e-46 Score=377.45 Aligned_cols=281 Identities=21% Similarity=0.358 Sum_probs=246.9
Q ss_pred eeEEEccCCcchhhhhccceeeccCCCCcEEEcCCCCCCCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCceEe
Q 013909 80 SVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVD 159 (434)
Q Consensus 80 g~~v~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 159 (434)
+..+..++........+ .++.||+.+++|..+++||.+|..+++++++++||++||.+.....++++|+||+.+++|+.
T Consensus 285 ~~l~~vGG~~~~~~~~~-~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLR-SVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred CeEEEECCCCCCCcccc-eeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceec
Confidence 33343333332233344 89999999999999999999999999999999999999999533457889999999999999
Q ss_pred cCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEECCEEEEEcCCCC
Q 013909 160 RFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKE 239 (434)
Q Consensus 160 ~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 239 (434)
+++|+. +|..+++++++|.||++||.++... ++++++|||.+++|+.+++|+.+|.+|++++++++||++||.++
T Consensus 364 ~a~M~~--~R~~~~v~~l~g~iYavGG~dg~~~---l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 364 VAPMNT--KRSDFGVAVLDGKLYAVGGFDGEKS---LNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDG 438 (571)
T ss_pred cCCccC--ccccceeEEECCEEEEEeccccccc---cccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCC
Confidence 999998 8999999999999999999997544 78999999999999999999999999999999999999999988
Q ss_pred CC-CCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEE
Q 013909 240 NR-HTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVY 318 (434)
Q Consensus 240 ~~-~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 318 (434)
.. .++++++|| |.+++|+.++||+.+|.++++++++++||++||+++.. .+..|+
T Consensus 439 ~~~~l~sve~YD-------P~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~-----------------~~~~VE 494 (571)
T KOG4441|consen 439 SSNCLNSVECYD-------PETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTS-----------------ALSSVE 494 (571)
T ss_pred CccccceEEEEc-------CCCCceeecCCcccccccceEEEECCEEEEECCccCCC-----------------ccceEE
Confidence 77 889999998 89999999999999999999999999999999998732 355699
Q ss_pred EeC-CCCCeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccCCCceeeeee
Q 013909 319 MLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKLPYRIKTTLT 397 (434)
Q Consensus 319 ~yd-~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~ 397 (434)
+|| .+++|+.+++|+.+|..+++ ++.++++|++||+++.. ++++++.|||++++|+..+++...|....+
T Consensus 495 ~ydp~~~~W~~v~~m~~~rs~~g~--~~~~~~ly~vGG~~~~~-------~l~~ve~ydp~~d~W~~~~~~~~~~~~~~~ 565 (571)
T KOG4441|consen 495 RYDPETNQWTMVAPMTSPRSAVGV--VVLGGKLYAVGGFDGNN-------NLNTVECYDPETDTWTEVTEPESGRGGAGV 565 (571)
T ss_pred EEcCCCCceeEcccCccccccccE--EEECCEEEEEecccCcc-------ccceeEEcCCCCCceeeCCCccccccCcce
Confidence 999 89999999999999998765 99999999999988877 789999999999999999885555555555
Q ss_pred EE
Q 013909 398 GF 399 (434)
Q Consensus 398 ~~ 399 (434)
++
T Consensus 566 ~~ 567 (571)
T KOG4441|consen 566 AV 567 (571)
T ss_pred EE
Confidence 44
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=7e-45 Score=366.47 Aligned_cols=304 Identities=17% Similarity=0.346 Sum_probs=258.3
Q ss_pred cCCcchhhhhccceeeccCCCCcEEEcCCCCCCCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCC
Q 013909 86 KKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK 165 (434)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~ 165 (434)
.....|..++.+.. .|...... -+.++.+|..... ...+.||++||........+.+++||+.+++|..+++||.
T Consensus 247 ~~~~~c~~~l~ea~-~~~~~~~~---~~~~~~~~t~~r~-~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~ 321 (571)
T KOG4441|consen 247 KRDSACRDLLDEAK-KYHLLPQR---RPVMQSPRTRPRR-SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPS 321 (571)
T ss_pred ccCHHHHHHHHHHH-HHhhCccc---CccccCCCcccCc-CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCc
Confidence 33556666666444 22211110 0115666655543 5578999999998755567889999999999999999997
Q ss_pred CCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCC
Q 013909 166 DMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPG 245 (434)
Q Consensus 166 ~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 245 (434)
+|..+++++++|+||++||++. ....++.+|+|||.+++|+.+++|+.+|..+++++++++||++||.++..++++
T Consensus 322 --~r~~~~~~~~~~~lYv~GG~~~--~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~s 397 (571)
T KOG4441|consen 322 --PRCRVGVAVLNGKLYVVGGYDS--GSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNS 397 (571)
T ss_pred --ccccccEEEECCEEEEEccccC--CCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEecccccccccc
Confidence 7889999999999999999984 124479999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEeeccccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCC
Q 013909 246 LEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEM 324 (434)
Q Consensus 246 ~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~ 324 (434)
+++|| |.+++|+.++||+..++++++++++++||++||.++... .++.+++|| .++
T Consensus 398 vE~YD-------p~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~----------------~l~sve~YDP~t~ 454 (571)
T KOG4441|consen 398 VECYD-------PVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSN----------------CLNSVECYDPETN 454 (571)
T ss_pred EEEec-------CCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCcc----------------ccceEEEEcCCCC
Confidence 99998 889999999999999999999999999999999887631 578999999 889
Q ss_pred CeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccCCCceeeeeeEEECCEE
Q 013909 325 KWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKLPYRIKTTLTGFWDGWL 404 (434)
Q Consensus 325 ~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~l 404 (434)
+|+.+++|+.+|.++++ ++.+++||++||.++.. .+.++++|||++++|+.+++|+.+|+.++++++++++
T Consensus 455 ~W~~~~~M~~~R~~~g~--a~~~~~iYvvGG~~~~~-------~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~l 525 (571)
T KOG4441|consen 455 TWTLIAPMNTRRSGFGV--AVLNGKIYVVGGFDGTS-------ALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKL 525 (571)
T ss_pred ceeecCCcccccccceE--EEECCEEEEECCccCCC-------ccceEEEEcCCCCceeEcccCccccccccEEEECCEE
Confidence 99999999999998764 99999999999999843 4567999999999999999999999999999999999
Q ss_pred EEEccccCCC-CCCCchhhhhhccccc
Q 013909 405 YFTSGQRDRG-PENPQPRKVIGEMWRT 430 (434)
Q Consensus 405 ~v~GG~~~~~-~~~~~~~~~~~~~w~~ 430 (434)
|++||++... ..+-+.+.-..|.|+.
T Consensus 526 y~vGG~~~~~~l~~ve~ydp~~d~W~~ 552 (571)
T KOG4441|consen 526 YAVGGFDGNNNLNTVECYDPETDTWTE 552 (571)
T ss_pred EEEecccCccccceeEEcCCCCCceee
Confidence 9999977754 5666667777788864
No 3
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=3.3e-43 Score=338.16 Aligned_cols=297 Identities=17% Similarity=0.267 Sum_probs=223.2
Q ss_pred CCCCcEEEcCC----CCCCCCceeEEEECCEEEEEeccCCC-CCceeeEEEEECCCCceEecCCCC-CCCC-ceeeEEEE
Q 013909 104 APDLEWEQMPS----APVPRLDGAAIQIKNLFYVFAGYGSL-DYVHSHVDVYNFTDNKWVDRFDMP-KDMA-HSHLGVVS 176 (434)
Q Consensus 104 ~~~~~W~~~~~----~p~~R~~~~~~~~~~~iyv~GG~~~~-~~~~~~v~~yd~~t~~W~~~~~~~-~~~~-r~~~~~~~ 176 (434)
+...+|.++.. +|.||.+|++++++++|||+||.... ....+++++||+.+++|+.+++++ .|.. +.+|++++
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~ 83 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVA 83 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEE
Confidence 35678999977 79999999999999999999998643 335678999999999999988765 3322 34788999
Q ss_pred eCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCC-----CCCcccceEEEECCEEEEEcCCCCCCC------CCC
Q 013909 177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL-----PSPRYSPATQLWRGRLHVMGGSKENRH------TPG 245 (434)
Q Consensus 177 ~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~~~------~~~ 245 (434)
++++||+|||.+... .++++++||+.+++|+.+++| |.+|..|++++.+++|||+||...... .++
T Consensus 84 ~~~~iyv~GG~~~~~---~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 160 (341)
T PLN02153 84 VGTKLYIFGGRDEKR---EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRT 160 (341)
T ss_pred ECCEEEEECCCCCCC---ccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccce
Confidence 999999999986543 368999999999999999887 889999999999999999999864322 223
Q ss_pred cceEEEEeeccccccCceEEccCCC---CCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-
Q 013909 246 LEHWSIAVKDGKALEKAWRTEIPIP---RGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD- 321 (434)
Q Consensus 246 ~~~~~~~~~~~~~~~~~W~~~~~~p---~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd- 321 (434)
+++|| +.+++|+.+++++ .++.++++++++++|||+||...... .........+++++||
T Consensus 161 v~~yd-------~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~---------~gG~~~~~~~~v~~yd~ 224 (341)
T PLN02153 161 IEAYN-------IADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSIL---------PGGKSDYESNAVQFFDP 224 (341)
T ss_pred EEEEE-------CCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccc---------cCCccceecCceEEEEc
Confidence 34444 8899999987653 56777788999999999999753200 0000112357899999
Q ss_pred CCCCeEEcCC---CCCCCCccceeEEEECCEEEEEcCcCCCCCC--ccceeeeccEEEEECCCCceEEec-----cCCCc
Q 013909 322 DEMKWKVLPP---MPKPNSHIECAWVIVNNSIIITGGTTEKHPM--TKRMILVGEVFQFHLDSLTWSVIG-----KLPYR 391 (434)
Q Consensus 322 ~~~~W~~~~~---~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~--~~~~~~~~~v~~yd~~~~~W~~~~-----~lp~~ 391 (434)
.+++|++++. +|.+|..++ +++++++||||||....... .......+++++||+++++|+.++ ++|..
T Consensus 225 ~~~~W~~~~~~g~~P~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~ 302 (341)
T PLN02153 225 ASGKWTEVETTGAKPSARSVFA--HAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRG 302 (341)
T ss_pred CCCcEEeccccCCCCCCcceee--eEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCc
Confidence 8899999874 577787664 48899999999997432100 001125679999999999999885 45555
Q ss_pred eeeeeeEE-E-CCEEEEEccccCCCCCCCchh
Q 013909 392 IKTTLTGF-W-DGWLYFTSGQRDRGPENPQPR 421 (434)
Q Consensus 392 r~~~~~~~-~-~~~l~v~GG~~~~~~~~~~~~ 421 (434)
+..++++. . +++||++||......+..+++
T Consensus 303 ~~~~~~~~v~~~~~~~~~gG~~~~~~~~~~~~ 334 (341)
T PLN02153 303 WTAYTTATVYGKNGLLMHGGKLPTNERTDDLY 334 (341)
T ss_pred cccccccccCCcceEEEEcCcCCCCccccceE
Confidence 55444433 3 458999999988754444443
No 4
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-43 Score=359.44 Aligned_cols=251 Identities=15% Similarity=0.234 Sum_probs=216.8
Q ss_pred cceeeccCCCCcEEEcCCCCCCCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEE
Q 013909 97 ATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS 176 (434)
Q Consensus 97 ~~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~ 176 (434)
..++.||+.+++|..+++||.+|..+++++++++|||+||........+++++|||.+++|..+++|+. +|..+++++
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~--~R~~~~~~~ 349 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIK--NRCRFSLAV 349 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcc--hhhceeEEE
Confidence 368899999999999999999999999999999999999986434456789999999999999999987 799999999
Q ss_pred eCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEECCEEEEEcCCCCCC---------------
Q 013909 177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENR--------------- 241 (434)
Q Consensus 177 ~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~--------------- 241 (434)
++++||++||.++.. .++++++|||.+++|+.+++||.+|..+++++++++|||+||..+..
T Consensus 350 ~~g~IYviGG~~~~~---~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 350 IDDTIYAIGGQNGTN---VERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred ECCEEEEECCcCCCC---CCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccc
Confidence 999999999986543 36889999999999999999999999999999999999999986421
Q ss_pred ---CCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEE
Q 013909 242 ---HTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVY 318 (434)
Q Consensus 242 ---~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 318 (434)
..+.+++|| |.+++|+.+++|+.++..+++++++|+|||+||.++... ..+.++
T Consensus 427 ~~~~~~~ve~YD-------P~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~----------------~~~~ve 483 (557)
T PHA02713 427 DTHSSNKVIRYD-------TVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKN----------------VKTCIF 483 (557)
T ss_pred cccccceEEEEC-------CCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCc----------------cceeEE
Confidence 123444444 999999999999999988899999999999999864311 234589
Q ss_pred EeC-CC-CCeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEecc
Q 013909 319 MLD-DE-MKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGK 387 (434)
Q Consensus 319 ~yd-~~-~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 387 (434)
+|| .+ ++|+.+++||.+|..+++ ++++|+||++||.++. .++++||+.+++|+.+.+
T Consensus 484 ~Ydp~~~~~W~~~~~m~~~r~~~~~--~~~~~~iyv~Gg~~~~----------~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 484 RYNTNTYNGWELITTTESRLSALHT--ILHDNTIMMLHCYESY----------MLQDTFNVYTYEWNHICH 542 (557)
T ss_pred EecCCCCCCeeEccccCccccccee--EEECCEEEEEeeecce----------eehhhcCcccccccchhh
Confidence 999 66 699999999999997654 8999999999998763 278999999999998743
No 5
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.6e-42 Score=345.29 Aligned_cols=287 Identities=20% Similarity=0.317 Sum_probs=226.2
Q ss_pred CcEEEcCC---CCCCCCceeEEEECCEEEEEeccCCCC-CceeeEEEEECCCCceEecCCCC-CCC-CceeeEEEEeCCE
Q 013909 107 LEWEQMPS---APVPRLDGAAIQIKNLFYVFAGYGSLD-YVHSHVDVYNFTDNKWVDRFDMP-KDM-AHSHLGVVSDGRY 180 (434)
Q Consensus 107 ~~W~~~~~---~p~~R~~~~~~~~~~~iyv~GG~~~~~-~~~~~v~~yd~~t~~W~~~~~~~-~~~-~r~~~~~~~~~~~ 180 (434)
++|.++++ +|.||.+|+++.++++|||+||..... ...+++|+||+.+++|+.++++. .|. +|.+|++++++++
T Consensus 151 ~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~ 230 (470)
T PLN02193 151 GKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGST 230 (470)
T ss_pred ceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCE
Confidence 79998876 688999999999999999999985432 34567999999999999876542 232 3678899999999
Q ss_pred EEEEeccCCCCCCCCCceeEEEECCCCceEecCCC---CCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccc
Q 013909 181 IYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL---PSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGK 257 (434)
Q Consensus 181 lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~ 257 (434)
||||||.+... .++++++||+.+++|++++++ |.+|..|+++..+++|||+||.......+.++.|+
T Consensus 231 lYvfGG~~~~~---~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd------- 300 (470)
T PLN02193 231 LYVFGGRDASR---QYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYN------- 300 (470)
T ss_pred EEEECCCCCCC---CCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEE-------
Confidence 99999987543 478999999999999999887 88999999999999999999997766566666666
Q ss_pred cccCceEEccC---CCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCC-
Q 013909 258 ALEKAWRTEIP---IPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPM- 332 (434)
Q Consensus 258 ~~~~~W~~~~~---~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~- 332 (434)
+.+++|+.+++ +|.++..+++++++++||++||.++. .++++++|| .+++|++++++
T Consensus 301 ~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~------------------~~~dv~~yD~~t~~W~~~~~~g 362 (470)
T PLN02193 301 IVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC------------------EVDDVHYYDPVQDKWTQVETFG 362 (470)
T ss_pred CCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC------------------ccCceEEEECCCCEEEEeccCC
Confidence 78999998764 55667777889999999999997643 257899999 88899999754
Q ss_pred --CCCCCccceeEEEECCEEEEEcCcCCCCCC--ccceeeeccEEEEECCCCceEEecc------CCCceeeeee--EEE
Q 013909 333 --PKPNSHIECAWVIVNNSIIITGGTTEKHPM--TKRMILVGEVFQFHLDSLTWSVIGK------LPYRIKTTLT--GFW 400 (434)
Q Consensus 333 --p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~--~~~~~~~~~v~~yd~~~~~W~~~~~------lp~~r~~~~~--~~~ 400 (434)
|.||..++ +++++++||||||....... .......+++++||+++++|+.++. .|.+|..+++ +.+
T Consensus 363 ~~P~~R~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~ 440 (470)
T PLN02193 363 VRPSERSVFA--SAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTI 440 (470)
T ss_pred CCCCCcceeE--EEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEE
Confidence 77887664 48899999999998642211 1112267899999999999999864 3567765543 223
Q ss_pred -C-CEEEEEccccCCCCCCCchhhhhhccccc
Q 013909 401 -D-GWLYFTSGQRDRGPENPQPRKVIGEMWRT 430 (434)
Q Consensus 401 -~-~~l~v~GG~~~~~~~~~~~~~~~~~~w~~ 430 (434)
+ +.|+++||......+. .|+|+.
T Consensus 441 ~~~~~~~~fGG~~~~~~~~-------~D~~~~ 465 (470)
T PLN02193 441 DGKKGLVMHGGKAPTNDRF-------DDLFFY 465 (470)
T ss_pred cCCceEEEEcCCCCccccc-------cceEEE
Confidence 3 4599999987655444 556654
No 6
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=8.9e-42 Score=325.96 Aligned_cols=274 Identities=17% Similarity=0.233 Sum_probs=217.9
Q ss_pred CCCceeEEEECCEEEEEeccCCCC---------CceeeEEEEE-CCC-CceEecCCCCCCCCceeeEEEEeCCEEEEEec
Q 013909 118 PRLDGAAIQIKNLFYVFAGYGSLD---------YVHSHVDVYN-FTD-NKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSG 186 (434)
Q Consensus 118 ~R~~~~~~~~~~~iyv~GG~~~~~---------~~~~~v~~yd-~~t-~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG 186 (434)
.++++.++++++.|||+||.+... ...+++++|+ +.. .+|..+++||. +|..+++++++++||++||
T Consensus 3 ~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~--~r~~~~~~~~~~~lyviGG 80 (323)
T TIGR03548 3 GVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPY--EAAYGASVSVENGIYYIGG 80 (323)
T ss_pred ceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCc--cccceEEEEECCEEEEEcC
Confidence 467788899999999999986542 2446788886 332 37999999987 6777778888999999999
Q ss_pred cCCCCCCCCCceeEEEECCCCce----EecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCc
Q 013909 187 QYGPQCRGPTSRTFVLDSETRKW----DSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKA 262 (434)
Q Consensus 187 ~~~~~~~~~~~~~~~yd~~t~~W----~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (434)
.++.. .++++++||+.+++| +.+++||.+|..|++++++++|||+||.......+.+++|| +.+++
T Consensus 81 ~~~~~---~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd-------~~~~~ 150 (323)
T TIGR03548 81 SNSSE---RFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFN-------LETQE 150 (323)
T ss_pred CCCCC---CceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEc-------CCCCC
Confidence 87543 368999999999998 78899999999999999999999999986544455556555 78999
Q ss_pred eEEccCCCC-CCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCC---CCCC
Q 013909 263 WRTEIPIPR-GGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMP---KPNS 337 (434)
Q Consensus 263 W~~~~~~p~-~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p---~~r~ 337 (434)
|+.++++|. ++..++++.++++|||+||.++. ...++++|| .+++|+.+++++ .|+.
T Consensus 151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~------------------~~~~~~~yd~~~~~W~~~~~~~~~~~p~~ 212 (323)
T TIGR03548 151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNI------------------AYTDGYKYSPKKNQWQKVADPTTDSEPIS 212 (323)
T ss_pred eeECCCCCCCCCCcceEEEECCEEEEEcCCCCc------------------cccceEEEecCCCeeEECCCCCCCCCcee
Confidence 999998874 67777888999999999998643 235689999 888999998763 4554
Q ss_pred cccee-EEEECCEEEEEcCcCCCCCC-------------------------ccceeeeccEEEEECCCCceEEeccCC-C
Q 013909 338 HIECA-WVIVNNSIIITGGTTEKHPM-------------------------TKRMILVGEVFQFHLDSLTWSVIGKLP-Y 390 (434)
Q Consensus 338 ~~~~~-~~~~~~~i~v~GG~~~~~~~-------------------------~~~~~~~~~v~~yd~~~~~W~~~~~lp-~ 390 (434)
.+.++ +++.+++|||+||.+..... .....+.+++++||+++++|+.++++| .
T Consensus 213 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 292 (323)
T TIGR03548 213 LLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFF 292 (323)
T ss_pred ccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccccc
Confidence 43333 34557999999998742100 000013468999999999999999887 5
Q ss_pred ceeeeeeEEECCEEEEEccccCCCCCCCchh
Q 013909 391 RIKTTLTGFWDGWLYFTSGQRDRGPENPQPR 421 (434)
Q Consensus 391 ~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~ 421 (434)
+|..++++.++++||++||+..++.|+|+++
T Consensus 293 ~r~~~~~~~~~~~iyv~GG~~~pg~rt~~~~ 323 (323)
T TIGR03548 293 ARCGAALLLTGNNIFSINGELKPGVRTPDIY 323 (323)
T ss_pred ccCchheEEECCEEEEEeccccCCcCCcCcC
Confidence 8889999999999999999999999999885
No 7
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=5.2e-42 Score=330.96 Aligned_cols=284 Identities=18% Similarity=0.319 Sum_probs=222.1
Q ss_pred cCCCCCCCCceeEEEECCEEEEEeccCCCCCceeeEEEEEC--CCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCC
Q 013909 112 MPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNF--TDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYG 189 (434)
Q Consensus 112 ~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~--~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~ 189 (434)
+++||.+|..+++++++++|||+||... +++++||+ .+++|..+++||.+ +|..+++++++++|||+||...
T Consensus 1 ~~~lp~~~~~~~~~~~~~~vyv~GG~~~-----~~~~~~d~~~~~~~W~~l~~~p~~-~R~~~~~~~~~~~iYv~GG~~~ 74 (346)
T TIGR03547 1 LPDLPVGFKNGTGAIIGDKVYVGLGSAG-----TSWYKLDLKKPSKGWQKIADFPGG-PRNQAVAAAIDGKLYVFGGIGK 74 (346)
T ss_pred CCCCCccccCceEEEECCEEEEEccccC-----CeeEEEECCCCCCCceECCCCCCC-CcccceEEEECCEEEEEeCCCC
Confidence 4789999999888899999999999742 46899996 57899999999842 6889999999999999999854
Q ss_pred CC---CCCCCceeEEEECCCCceEecC-CCCCCcccceEE-EECCEEEEEcCCCCCC-----------------------
Q 013909 190 PQ---CRGPTSRTFVLDSETRKWDSIP-PLPSPRYSPATQ-LWRGRLHVMGGSKENR----------------------- 241 (434)
Q Consensus 190 ~~---~~~~~~~~~~yd~~t~~W~~~~-~~p~~r~~~~~~-~~~~~iyv~GG~~~~~----------------------- 241 (434)
.. ....++++|+||+.+++|+.++ ++|.+|..|+++ +++++||++||.....
T Consensus 75 ~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (346)
T TIGR03547 75 ANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIA 154 (346)
T ss_pred CCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHH
Confidence 22 1124689999999999999997 567778888777 7899999999986421
Q ss_pred -----------CCCCcceEEEEeeccccccCceEEccCCCC-CCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccc
Q 013909 242 -----------HTPGLEHWSIAVKDGKALEKAWRTEIPIPR-GGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRR 309 (434)
Q Consensus 242 -----------~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~-~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~ 309 (434)
..+.+++|| |.+++|+.++++|. ++.+++++.++++|||+||.....
T Consensus 155 ~~~~~~~~~~~~~~~v~~YD-------p~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~-------------- 213 (346)
T TIGR03547 155 AYFSQPPEDYFWNKNVLSYD-------PSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPG-------------- 213 (346)
T ss_pred HHhCCChhHcCccceEEEEE-------CCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCC--------------
Confidence 123445555 89999999999985 577778889999999999975321
Q ss_pred cceeeCcEEEe--C-CCCCeEEcCCCCCCCCc-----cceeEEEECCEEEEEcCcCCCCCC---------ccc-eeeecc
Q 013909 310 HEVVYGDVYML--D-DEMKWKVLPPMPKPNSH-----IECAWVIVNNSIIITGGTTEKHPM---------TKR-MILVGE 371 (434)
Q Consensus 310 ~~~~~~~v~~y--d-~~~~W~~~~~~p~~r~~-----~~~~~~~~~~~i~v~GG~~~~~~~---------~~~-~~~~~~ 371 (434)
....+++.| | .+++|+.+++||.||.. .++++++++++|||+||.+..... ... ...+..
T Consensus 214 --~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (346)
T TIGR03547 214 --LRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWS 291 (346)
T ss_pred --ccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeE
Confidence 012345555 4 45699999999988632 234467899999999998632110 000 001246
Q ss_pred EEEEECCCCceEEeccCCCceeeeeeEEECCEEEEEccccCCCCCCCchhhhh
Q 013909 372 VFQFHLDSLTWSVIGKLPYRIKTTLTGFWDGWLYFTSGQRDRGPENPQPRKVI 424 (434)
Q Consensus 372 v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~ 424 (434)
+++||+++++|+.+++||.+|..++++.++++|||+||....+.++.+|+++.
T Consensus 292 ~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 292 SEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred eeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccCCCCCEeeeEEEEE
Confidence 89999999999999999999999998899999999999999889888887654
No 8
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.9e-41 Score=343.08 Aligned_cols=278 Identities=12% Similarity=0.176 Sum_probs=223.3
Q ss_pred EEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCce
Q 013909 130 LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKW 209 (434)
Q Consensus 130 ~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W 209 (434)
.|++.||... .....+++||+.+++|..++++|. +|..+++++++++||++||.+... ..++++++|||.+++|
T Consensus 259 ~l~~~~g~~~--~~~~~v~~yd~~~~~W~~l~~mp~--~r~~~~~a~l~~~IYviGG~~~~~--~~~~~v~~Yd~~~n~W 332 (557)
T PHA02713 259 CLVCHDTKYN--VCNPCILVYNINTMEYSVISTIPN--HIINYASAIVDNEIIIAGGYNFNN--PSLNKVYKINIENKIH 332 (557)
T ss_pred EEEEecCccc--cCCCCEEEEeCCCCeEEECCCCCc--cccceEEEEECCEEEEEcCCCCCC--CccceEEEEECCCCeE
Confidence 3555555321 122468999999999999999987 678899999999999999975322 2468999999999999
Q ss_pred EecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEECCEEEEEc
Q 013909 210 DSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVG 289 (434)
Q Consensus 210 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~G 289 (434)
+.+++||.+|..+++++++++||++||.++....+++++|+ |.+++|+.++++|.++..+++++++++||++|
T Consensus 333 ~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Yd-------p~~~~W~~~~~mp~~r~~~~~~~~~g~IYviG 405 (557)
T PHA02713 333 VELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYT-------MGDDKWKMLPDMPIALSSYGMCVLDQYIYIIG 405 (557)
T ss_pred eeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEE-------CCCCeEEECCCCCcccccccEEEECCEEEEEe
Confidence 99999999999999999999999999997666667788887 88999999999999999889999999999999
Q ss_pred CCCCCCCCCCCCCccc-cccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCcccee
Q 013909 290 GQEGDFMAKPGSPIFK-CSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMI 367 (434)
Q Consensus 290 G~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~ 367 (434)
|.++............ ........++.+++|| .+++|+.+++|+.+|..++ +++++++|||+||.++...
T Consensus 406 G~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~--~~~~~~~IYv~GG~~~~~~------ 477 (557)
T PHA02713 406 GRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPG--VVSHKDDIYVVCDIKDEKN------ 477 (557)
T ss_pred CCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCc--EEEECCEEEEEeCCCCCCc------
Confidence 9864310000000000 0000011257899999 7889999999999998764 4899999999999875332
Q ss_pred eeccEEEEECCC-CceEEeccCCCceeeeeeEEECCEEEEEccccCCCCCCCchhhhhhccccc
Q 013909 368 LVGEVFQFHLDS-LTWSVIGKLPYRIKTTLTGFWDGWLYFTSGQRDRGPENPQPRKVIGEMWRT 430 (434)
Q Consensus 368 ~~~~v~~yd~~~-~~W~~~~~lp~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~w~~ 430 (434)
..+.+++|||++ ++|+.+++||.+|..+++++++|+||++||+.+. .+.+.|....+.|..
T Consensus 478 ~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~--~~~e~yd~~~~~W~~ 539 (557)
T PHA02713 478 VKTCIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESY--MLQDTFNVYTYEWNH 539 (557)
T ss_pred cceeEEEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeecce--eehhhcCcccccccc
Confidence 334689999999 8999999999999999999999999999998763 477888888888863
No 9
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=5.9e-40 Score=319.03 Aligned_cols=287 Identities=16% Similarity=0.283 Sum_probs=220.3
Q ss_pred cEEEcCCCCCCCCceeEEEECCEEEEEeccCCCCCceeeEEEEECC--CCceEecCCCCCCCCceeeEEEEeCCEEEEEe
Q 013909 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFT--DNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVS 185 (434)
Q Consensus 108 ~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~--t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~G 185 (434)
.++.+++||.+|..+++++++++|||+||... +.+++||+. +++|..++++|.+ +|.++++++++++|||+|
T Consensus 18 ~~~~l~~lP~~~~~~~~~~~~~~iyv~gG~~~-----~~~~~~d~~~~~~~W~~l~~~p~~-~r~~~~~v~~~~~IYV~G 91 (376)
T PRK14131 18 NAEQLPDLPVPFKNGTGAIDNNTVYVGLGSAG-----TSWYKLDLNAPSKGWTKIAAFPGG-PREQAVAAFIDGKLYVFG 91 (376)
T ss_pred ecccCCCCCcCccCCeEEEECCEEEEEeCCCC-----CeEEEEECCCCCCCeEECCcCCCC-CcccceEEEECCEEEEEc
Confidence 56889999999998899999999999999743 348899986 4789999988743 688999999999999999
Q ss_pred ccCCCC---CCCCCceeEEEECCCCceEecCC-CCCCcccceEEE-ECCEEEEEcCCCCCC-------------------
Q 013909 186 GQYGPQ---CRGPTSRTFVLDSETRKWDSIPP-LPSPRYSPATQL-WRGRLHVMGGSKENR------------------- 241 (434)
Q Consensus 186 G~~~~~---~~~~~~~~~~yd~~t~~W~~~~~-~p~~r~~~~~~~-~~~~iyv~GG~~~~~------------------- 241 (434)
|..... ....++++|+||+.+++|+.+++ +|.++..|++++ .+++|||+||.....
T Consensus 92 G~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~ 171 (376)
T PRK14131 92 GIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKD 171 (376)
T ss_pred CCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhh
Confidence 986411 11346899999999999999985 477778888777 899999999975320
Q ss_pred ---------------CCCCcceEEEEeeccccccCceEEccCCCC-CCCceeEEEECCEEEEEcCCCCCCCCCCCCCccc
Q 013909 242 ---------------HTPGLEHWSIAVKDGKALEKAWRTEIPIPR-GGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFK 305 (434)
Q Consensus 242 ---------------~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~-~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 305 (434)
..+.+++|| |.+++|+.++++|. ++.+++++.++++|||+||......
T Consensus 172 ~i~~~~~~~~~~~~~~~~~v~~YD-------~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~--------- 235 (376)
T PRK14131 172 KINDAYFDKKPEDYFFNKEVLSYD-------PSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGL--------- 235 (376)
T ss_pred hhHHHHhcCChhhcCcCceEEEEE-------CCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCc---------
Confidence 112334444 89999999999985 6777788899999999999753210
Q ss_pred cccccceeeCcEE--EeC-CCCCeEEcCCCCCCCCc------cceeEEEECCEEEEEcCcCCCCCCc-----c----c-e
Q 013909 306 CSRRHEVVYGDVY--MLD-DEMKWKVLPPMPKPNSH------IECAWVIVNNSIIITGGTTEKHPMT-----K----R-M 366 (434)
Q Consensus 306 ~~~~~~~~~~~v~--~yd-~~~~W~~~~~~p~~r~~------~~~~~~~~~~~i~v~GG~~~~~~~~-----~----~-~ 366 (434)
...+++ .|| .+++|+.+++||.+|.. .++.+++++++|||+||.+...... . . .
T Consensus 236 -------~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~ 308 (376)
T PRK14131 236 -------RTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGL 308 (376)
T ss_pred -------CChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCC
Confidence 123344 556 56899999999887742 2233478899999999986432100 0 0 0
Q ss_pred eeeccEEEEECCCCceEEeccCCCceeeeeeEEECCEEEEEccccCCCCCCCchhhh
Q 013909 367 ILVGEVFQFHLDSLTWSVIGKLPYRIKTTLTGFWDGWLYFTSGQRDRGPENPQPRKV 423 (434)
Q Consensus 367 ~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~ 423 (434)
.....+++||+++++|+.+++||.+|..++++.++++|||+||....+.+...|+.+
T Consensus 309 ~~~~~~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~ 365 (376)
T PRK14131 309 KKSWSDEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGETAGGKAVSDVTLL 365 (376)
T ss_pred cceeehheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCCCCCcEeeeEEEE
Confidence 011357899999999999999999999999999999999999987766666666533
No 10
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=3.7e-39 Score=310.05 Aligned_cols=296 Identities=16% Similarity=0.275 Sum_probs=215.5
Q ss_pred ccCCceEEecC----CCCCccccceeeeEEEcc-----CCcc-hhhhhccceeeccCCCCcEEEcCCCC-CCCC---cee
Q 013909 58 LEKSGVVVIPH----VNATKIDRQRESVAVIDK-----KGQD-AERFLSATFADLPAPDLEWEQMPSAP-VPRL---DGA 123 (434)
Q Consensus 58 ~~~~~W~~~~~----~~~~r~~~~~~g~~v~~~-----~~~~-~~~~~~~~~~~~~~~~~~W~~~~~~p-~~R~---~~~ 123 (434)
+...+|..++. ++.+|.. ++++++.+ ++.. .......+++.||+.+++|+.+++++ .||. +|+
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~---h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~ 80 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCS---HGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVR 80 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCc---ceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceE
Confidence 36778999977 5677733 33333222 2221 12233458999999999999998764 3443 788
Q ss_pred EEEECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCC---CCCceeeEEEEeCCEEEEEeccCCCCC---CCCCc
Q 013909 124 AIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK---DMAHSHLGVVSDGRYIYIVSGQYGPQC---RGPTS 197 (434)
Q Consensus 124 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~---~~~r~~~~~~~~~~~lyv~GG~~~~~~---~~~~~ 197 (434)
+++++++||||||..... .++++++||+.+++|+.+++++. |.+|..|++++.+++|||+||.+.... ...++
T Consensus 81 ~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 159 (341)
T PLN02153 81 MVAVGTKLYIFGGRDEKR-EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFR 159 (341)
T ss_pred EEEECCEEEEECCCCCCC-ccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccc
Confidence 999999999999987554 46789999999999999987732 457999999999999999999864321 12357
Q ss_pred eeEEEECCCCceEecCCCC---CCcccceEEEECCEEEEEcCCCCC--------CCCCCcceEEEEeeccccccCceEEc
Q 013909 198 RTFVLDSETRKWDSIPPLP---SPRYSPATQLWRGRLHVMGGSKEN--------RHTPGLEHWSIAVKDGKALEKAWRTE 266 (434)
Q Consensus 198 ~~~~yd~~t~~W~~~~~~p---~~r~~~~~~~~~~~iyv~GG~~~~--------~~~~~~~~~~~~~~~~~~~~~~W~~~ 266 (434)
++++||+++++|+.+++++ .+|..|++++++++|||+||.... ...+.+++|| +.+++|+++
T Consensus 160 ~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd-------~~~~~W~~~ 232 (341)
T PLN02153 160 TIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFD-------PASGKWTEV 232 (341)
T ss_pred eEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEE-------cCCCcEEec
Confidence 8999999999999998764 789999999999999999997421 1123445554 889999997
Q ss_pred cC---CCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCC---CCCCCCc-
Q 013909 267 IP---IPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPP---MPKPNSH- 338 (434)
Q Consensus 267 ~~---~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~---~p~~r~~- 338 (434)
.+ +|.++..+++++++++||||||...... ..........+++|+|| ++++|+.+.. .|.||.+
T Consensus 233 ~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~--------~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~ 304 (341)
T PLN02153 233 ETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDL--------KGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWT 304 (341)
T ss_pred cccCCCCCCcceeeeEEECCEEEEECcccCCcc--------ccccccccccccEEEEEcCccEEEeccCCCCCCCCCccc
Confidence 64 5777777899999999999999753210 00011223578999999 8899999862 2344544
Q ss_pred -cceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECC
Q 013909 339 -IECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLD 378 (434)
Q Consensus 339 -~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~ 378 (434)
+.++++..+++|||+||.+.... .++|++.|+..
T Consensus 305 ~~~~~~v~~~~~~~~~gG~~~~~~------~~~~~~~~~~~ 339 (341)
T PLN02153 305 AYTTATVYGKNGLLMHGGKLPTNE------RTDDLYFYAVN 339 (341)
T ss_pred cccccccCCcceEEEEcCcCCCCc------cccceEEEecc
Confidence 44332333458999999977643 67899999864
No 11
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=3.3e-39 Score=321.63 Aligned_cols=316 Identities=13% Similarity=0.217 Sum_probs=236.0
Q ss_pred HHHHHHhcCCCCCCcCcceeeeeecc--cccC----CceEEecCC---CCCccccceeeeEEEc-----cCCcc-hhhhh
Q 013909 31 IADFMWASSSSSFSSSSAHLSVASNW--ALEK----SGVVVIPHV---NATKIDRQRESVAVID-----KKGQD-AERFL 95 (434)
Q Consensus 31 ~~~~l~~~GG~~~~~~~~~~~~~~~y--d~~~----~~W~~~~~~---~~~r~~~~~~g~~v~~-----~~~~~-~~~~~ 95 (434)
.++.|+.|+|.+. ..++.+..| ||.+ ++|..++++ +.+|. .++.+++. -++.. .....
T Consensus 119 ~~~~ivgf~G~~~----~~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~---~h~~~~~~~~iyv~GG~~~~~~~~ 191 (470)
T PLN02193 119 QGGKIVGFHGRST----DVLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRC---SHGIAQVGNKIYSFGGEFTPNQPI 191 (470)
T ss_pred cCCeEEEEeccCC----CcEEeeEEEEecCCChhhhceEEEcccCCCCCCCcc---ccEEEEECCEEEEECCcCCCCCCe
Confidence 3788888999832 247777666 6654 799998874 55663 33333322 22221 12224
Q ss_pred ccceeeccCCCCcEEEcCC---CCC-CCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCC-CCCce
Q 013909 96 SATFADLPAPDLEWEQMPS---APV-PRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK-DMAHS 170 (434)
Q Consensus 96 ~~~~~~~~~~~~~W~~~~~---~p~-~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~-~~~r~ 170 (434)
..+++.||+.+++|+.++. +|. +|.+|++++++++|||+||..... .++++|+||+.+++|+++++++. |.+|.
T Consensus 192 ~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~-~~ndv~~yD~~t~~W~~l~~~~~~P~~R~ 270 (470)
T PLN02193 192 DKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASR-QYNGFYSFDTTTNEWKLLTPVEEGPTPRS 270 (470)
T ss_pred eCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCC-CCccEEEEECCCCEEEEcCcCCCCCCCcc
Confidence 4589999999999998865 343 356889999999999999987654 46889999999999999988732 44799
Q ss_pred eeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCC---CCCCcccceEEEECCEEEEEcCCCCCCCCCCcc
Q 013909 171 HLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP---LPSPRYSPATQLWRGRLHVMGGSKENRHTPGLE 247 (434)
Q Consensus 171 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 247 (434)
.|++++.+++|||+||++... .++++++||+.+++|+.+++ +|.+|..|++++++++|||+||.++.. .++++
T Consensus 271 ~h~~~~~~~~iYv~GG~~~~~---~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~-~~dv~ 346 (470)
T PLN02193 271 FHSMAADEENVYVFGGVSATA---RLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCE-VDDVH 346 (470)
T ss_pred ceEEEEECCEEEEECCCCCCC---CcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCc-cCceE
Confidence 999999999999999987643 36899999999999999864 678899999999999999999986543 45566
Q ss_pred eEEEEeeccccccCceEEccCC---CCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CC
Q 013909 248 HWSIAVKDGKALEKAWRTEIPI---PRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DE 323 (434)
Q Consensus 248 ~~~~~~~~~~~~~~~W~~~~~~---p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~ 323 (434)
+|| +.+++|+.++++ |.++..+++++++++||||||...... .........++++++|| .+
T Consensus 347 ~yD-------~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~--------~~~~~~~~~~ndv~~~D~~t 411 (470)
T PLN02193 347 YYD-------PVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDP--------LAHVGPGQLTDGTFALDTET 411 (470)
T ss_pred EEE-------CCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCcc--------ccccCccceeccEEEEEcCc
Confidence 665 789999998654 677777899999999999999864210 00011123678999999 88
Q ss_pred CCeEEcCC------CCCCCCccceeEEEE--CCEEEEEcCcCCCCCCccceeeeccEEEEECCC
Q 013909 324 MKWKVLPP------MPKPNSHIECAWVIV--NNSIIITGGTTEKHPMTKRMILVGEVFQFHLDS 379 (434)
Q Consensus 324 ~~W~~~~~------~p~~r~~~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~ 379 (434)
++|+.++. .|.+|..++++++.+ ++.|++|||.+.... .++|+|+|++++
T Consensus 412 ~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~------~~~D~~~~~~~~ 469 (470)
T PLN02193 412 LQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTND------RFDDLFFYGIDS 469 (470)
T ss_pred CEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccc------cccceEEEecCC
Confidence 99999874 356676665433333 345999999976544 789999998765
No 12
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=3.1e-38 Score=321.94 Aligned_cols=261 Identities=21% Similarity=0.331 Sum_probs=219.1
Q ss_pred ceeeccCCCCcEEEcCCCCCCCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe
Q 013909 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD 177 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~ 177 (434)
.+..|+...++|..++++|. +..+++++++++||++||........+++++||+.+++|..+++++. +|.+|+++++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~--~R~~~~~~~~ 341 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIY--PRKNPGVTVF 341 (534)
T ss_pred eeeecchhhhhcccccCccc-cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCc--ccccceEEEE
Confidence 45678888889998887664 34568889999999999997666567789999999999999999987 6899999999
Q ss_pred CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEECCEEEEEcCCCCC-CCCCCcceEEEEeecc
Q 013909 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKEN-RHTPGLEHWSIAVKDG 256 (434)
Q Consensus 178 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~~~~~~~~ 256 (434)
+++||++||.+.. ..++++++||+.+++|+.+++||.+|..|+++.++++|||+||.... ...+.+++|+
T Consensus 342 ~~~lyv~GG~~~~---~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd------ 412 (534)
T PHA03098 342 NNRIYVIGGIYNS---ISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFS------ 412 (534)
T ss_pred CCEEEEEeCCCCC---EecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEe------
Confidence 9999999998743 34689999999999999999999999999999999999999997432 2345666666
Q ss_pred ccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCC
Q 013909 257 KALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKP 335 (434)
Q Consensus 257 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~ 335 (434)
+.+++|+.++++|.++.+++++.++++|||+||.+.... ...++.+++|| .+++|+.++++|.|
T Consensus 413 -~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~--------------~~~~~~v~~yd~~~~~W~~~~~~~~~ 477 (534)
T PHA03098 413 -LNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDN--------------IKVYNIVESYNPVTNKWTELSSLNFP 477 (534)
T ss_pred -CCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCC--------------CcccceEEEecCCCCceeeCCCCCcc
Confidence 789999999999999888899999999999999764321 01245699999 88899999999999
Q ss_pred CCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccCCCceee
Q 013909 336 NSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKLPYRIKT 394 (434)
Q Consensus 336 r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~ 394 (434)
|..+++ ++.+++|||+||.+... ..+++++||+++++|+.++.+|.....
T Consensus 478 r~~~~~--~~~~~~iyv~GG~~~~~-------~~~~v~~yd~~~~~W~~~~~~p~~~~~ 527 (534)
T PHA03098 478 RINASL--CIFNNKIYVVGGDKYEY-------YINEIEVYDDKTNTWTLFCKFPKVIGS 527 (534)
T ss_pred cccceE--EEECCEEEEEcCCcCCc-------ccceeEEEeCCCCEEEecCCCcccccc
Confidence 887654 77899999999987654 457899999999999999887765433
No 13
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=2.4e-39 Score=279.00 Aligned_cols=281 Identities=18% Similarity=0.291 Sum_probs=225.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCcCcceee--eeecccccCCceEEecCCCCCccccceeeeEEEccCCcchhhhhccceeec
Q 013909 25 LLGAALIADFMWASSSSSFSSSSAHLS--VASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADL 102 (434)
Q Consensus 25 ~~~~~~~~~~l~~~GG~~~~~~~~~~~--~~~~yd~~~~~W~~~~~~~~~r~~~~~~g~~v~~~~~~~~~~~~~~~~~~~ 102 (434)
-|+++.++++||.|||+..|+...+.. +|+.++..+-+|+.+|+-.... .+.
T Consensus 16 NHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka------------------------~i~-- 69 (392)
T KOG4693|consen 16 NHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKA------------------------TIE-- 69 (392)
T ss_pred cceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccc------------------------ccc--
Confidence 478889999999999998775444443 5678888899999998821111 110
Q ss_pred cCCCCcEEEcCCCCCCCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCceEecC---CCCCCCCceeeEEEEeCC
Q 013909 103 PAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRF---DMPKDMAHSHLGVVSDGR 179 (434)
Q Consensus 103 ~~~~~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~~~~~~~r~~~~~~~~~~ 179 (434)
.+.+..|..|.+|+.+.+++++||.||++.....-+-+++|||++++|.+.. -+| .+|.+|++|++++
T Consensus 70 -------~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vP--gaRDGHsAcV~gn 140 (392)
T KOG4693|consen 70 -------SPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVP--GARDGHSACVWGN 140 (392)
T ss_pred -------CCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecC--CccCCceeeEECc
Confidence 1224568899999999999999999999887777788999999999998642 233 3899999999999
Q ss_pred EEEEEeccCCCCCCCCCceeEEEECCCCceEecC---CCCCCcccceEEEECCEEEEEcCCCCCC--CCCCcceEEEEee
Q 013909 180 YIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP---PLPSPRYSPATQLWRGRLHVMGGSKENR--HTPGLEHWSIAVK 254 (434)
Q Consensus 180 ~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~~~~~~~ 254 (434)
.+|||||+.... ....+++..+|..|.+|+.+. ..|.-|..|++.++++.+|||||+.+.. +...-+.|+-.+-
T Consensus 141 ~MyiFGGye~~a-~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~ 219 (392)
T KOG4693|consen 141 QMYIFGGYEEDA-QRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIM 219 (392)
T ss_pred EEEEecChHHHH-HhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeE
Confidence 999999986543 234689999999999999985 4566799999999999999999986542 3445566666666
Q ss_pred ccccccCceEEccC---CCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcC
Q 013909 255 DGKALEKAWRTEIP---IPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLP 330 (434)
Q Consensus 255 ~~~~~~~~W~~~~~---~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~ 330 (434)
.+|..|+.|...++ .|.++.+|++.+++++||+|||+++. .++.++|+|+|| .+..|+.+.
T Consensus 220 ~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~---------------ln~HfndLy~FdP~t~~W~~I~ 284 (392)
T KOG4693|consen 220 ALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGT---------------LNVHFNDLYCFDPKTSMWSVIS 284 (392)
T ss_pred EEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchh---------------hhhhhcceeecccccchheeee
Confidence 66688999998755 57888889999999999999999865 335789999999 778999885
Q ss_pred ---CCCCCCCccceeEEEECCEEEEEcCcCC
Q 013909 331 ---PMPKPNSHIECAWVIVNNSIIITGGTTE 358 (434)
Q Consensus 331 ---~~p~~r~~~~~~~~~~~~~i~v~GG~~~ 358 (434)
..|.+|.++. +++.+++||+|||...
T Consensus 285 ~~Gk~P~aRRRqC--~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 285 VRGKYPSARRRQC--SVVSGGKVYLFGGTSP 313 (392)
T ss_pred ccCCCCCccccee--EEEECCEEEEecCCCC
Confidence 5788899874 4999999999999764
No 14
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=1e-37 Score=301.02 Aligned_cols=265 Identities=18% Similarity=0.219 Sum_probs=194.6
Q ss_pred cceeeccC--CCCcEEEcCCCC-CCCCceeEEEECCEEEEEeccCCCC-----CceeeEEEEECCCCceEecCCCCCCCC
Q 013909 97 ATFADLPA--PDLEWEQMPSAP-VPRLDGAAIQIKNLFYVFAGYGSLD-----YVHSHVDVYNFTDNKWVDRFDMPKDMA 168 (434)
Q Consensus 97 ~~~~~~~~--~~~~W~~~~~~p-~~R~~~~~~~~~~~iyv~GG~~~~~-----~~~~~v~~yd~~t~~W~~~~~~~~~~~ 168 (434)
..++.||+ .+++|..+++|| .+|..+++++++++|||+||..... ..++++|+||+.+++|+.+++ +.|.+
T Consensus 29 ~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~-~~p~~ 107 (346)
T TIGR03547 29 TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT-RSPVG 107 (346)
T ss_pred CeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC-CCCCc
Confidence 36778875 678999999999 5899999999999999999985322 246789999999999999974 33446
Q ss_pred ceeeEEE-EeCCEEEEEeccCCCCC-------------------------------CCCCceeEEEECCCCceEecCCCC
Q 013909 169 HSHLGVV-SDGRYIYIVSGQYGPQC-------------------------------RGPTSRTFVLDSETRKWDSIPPLP 216 (434)
Q Consensus 169 r~~~~~~-~~~~~lyv~GG~~~~~~-------------------------------~~~~~~~~~yd~~t~~W~~~~~~p 216 (434)
|.+++++ +++++||++||.+.... ...++++++|||.+++|+.+++||
T Consensus 108 ~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p 187 (346)
T TIGR03547 108 LLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENP 187 (346)
T ss_pred ccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCC
Confidence 7777776 78999999999863200 001378999999999999999999
Q ss_pred C-CcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCC-------CceeEEEECCEEEEE
Q 013909 217 S-PRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGG-------PHRACFVFNDRLFVV 288 (434)
Q Consensus 217 ~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~-------~~~~~~~~~~~iyv~ 288 (434)
. +|..++++.++++|||+||..... ....+.+ +|++++.+++|+.++++|.++ ..+++++++++|||+
T Consensus 188 ~~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~---~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~ 263 (346)
T TIGR03547 188 FLGTAGSAIVHKGNKLLLINGEIKPG-LRTAEVK---QYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVA 263 (346)
T ss_pred CCcCCCceEEEECCEEEEEeeeeCCC-ccchheE---EEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEe
Confidence 6 689999999999999999985433 2222332 233447888999999887543 234577899999999
Q ss_pred cCCCCCCCCCC--CCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccc
Q 013909 289 GGQEGDFMAKP--GSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKR 365 (434)
Q Consensus 289 GG~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~ 365 (434)
||.+....... ........ .......+++|| ++++|+.+++||.+|..+ ++++++++|||+||.+....
T Consensus 264 GG~~~~~~~~~~~~~~~~~~~--~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~~--~~~~~~~~iyv~GG~~~~~~---- 335 (346)
T TIGR03547 264 GGANFPGAQENYKNGKLYAHE--GLIKAWSSEVYALDNGKWSKVGKLPQGLAYG--VSVSWNNGVLLIGGENSGGK---- 335 (346)
T ss_pred ecCCCCCchhhhhcCCccccC--CCCceeEeeEEEecCCcccccCCCCCCceee--EEEEcCCEEEEEeccCCCCC----
Confidence 99863210000 00000000 001123578888 888999999999998764 44789999999999876554
Q ss_pred eeeeccEEEEE
Q 013909 366 MILVGEVFQFH 376 (434)
Q Consensus 366 ~~~~~~v~~yd 376 (434)
.+++++.|-
T Consensus 336 --~~~~v~~~~ 344 (346)
T TIGR03547 336 --AVTDVYLLS 344 (346)
T ss_pred --EeeeEEEEE
Confidence 567887664
No 15
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=6.1e-37 Score=297.90 Aligned_cols=305 Identities=17% Similarity=0.160 Sum_probs=213.3
Q ss_pred ceEEecCCCCCccccceeeeEEEccCCcchhhhhccceeeccCC--CCcEEEcCCCC-CCCCceeEEEECCEEEEEeccC
Q 013909 62 GVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAP--DLEWEQMPSAP-VPRLDGAAIQIKNLFYVFAGYG 138 (434)
Q Consensus 62 ~W~~~~~~~~~r~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~--~~~W~~~~~~p-~~R~~~~~~~~~~~iyv~GG~~ 138 (434)
.+..+|+|+.++.. ...+++.+.-.-........++.||.. +++|..++++| .+|.+++++.++++|||+||..
T Consensus 18 ~~~~l~~lP~~~~~---~~~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~ 94 (376)
T PRK14131 18 NAEQLPDLPVPFKN---GTGAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIG 94 (376)
T ss_pred ecccCCCCCcCccC---CeEEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCC
Confidence 46678888888732 222222211000000011246677764 57999999998 5899999999999999999986
Q ss_pred C-C----CCceeeEEEEECCCCceEecCCCCCCCCceeeEEEE-eCCEEEEEeccCCCCC--------------------
Q 013909 139 S-L----DYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQC-------------------- 192 (434)
Q Consensus 139 ~-~----~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~-------------------- 192 (434)
. . ...++++|+||+.+++|+.++++ .|.++.+|++++ .+++||++||.+....
T Consensus 95 ~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~-~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i 173 (376)
T PRK14131 95 KTNSEGSPQVFDDVYKYDPKTNSWQKLDTR-SPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKI 173 (376)
T ss_pred CCCCCCceeEcccEEEEeCCCCEEEeCCCC-CCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhh
Confidence 4 1 12467899999999999999863 244677777776 8999999999753100
Q ss_pred -----------CCCCceeEEEECCCCceEecCCCCC-CcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeecccccc
Q 013909 193 -----------RGPTSRTFVLDSETRKWDSIPPLPS-PRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALE 260 (434)
Q Consensus 193 -----------~~~~~~~~~yd~~t~~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~ 260 (434)
....+++++||+.+++|+.+++||. +|..|+++.++++|||+||..... ....++|.+ ++|+.+
T Consensus 174 ~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~-~~~~~~~~~---~~~~~~ 249 (376)
T PRK14131 174 NDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPG-LRTDAVKQG---KFTGNN 249 (376)
T ss_pred HHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCC-cCChhheEE---EecCCC
Confidence 0124789999999999999999996 788899999999999999975432 233444432 334889
Q ss_pred CceEEccCCCCCCC--------ceeEEEECCEEEEEcCCCCCCCCC-C-CCCccccccccceeeCcEEEeC-CCCCeEEc
Q 013909 261 KAWRTEIPIPRGGP--------HRACFVFNDRLFVVGGQEGDFMAK-P-GSPIFKCSRRHEVVYGDVYMLD-DEMKWKVL 329 (434)
Q Consensus 261 ~~W~~~~~~p~~~~--------~~~~~~~~~~iyv~GG~~~~~~~~-~-~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~ 329 (434)
++|+.++++|.++. ++.+++++++|||+||.+...... . ......+.... ....+++|| .+++|+.+
T Consensus 250 ~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~yd~~~~~W~~~ 327 (376)
T PRK14131 250 LKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLK--KSWSDEIYALVNGKWQKV 327 (376)
T ss_pred cceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCc--ceeehheEEecCCccccc
Confidence 99999998876542 233567899999999976321000 0 00000000000 112467899 88899999
Q ss_pred CCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEE
Q 013909 330 PPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSV 384 (434)
Q Consensus 330 ~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 384 (434)
+++|.||..+ ++++++++|||+||...... .++++++|+++.+.++.
T Consensus 328 ~~lp~~r~~~--~av~~~~~iyv~GG~~~~~~------~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 328 GELPQGLAYG--VSVSWNNGVLLIGGETAGGK------AVSDVTLLSWDGKKLTV 374 (376)
T ss_pred CcCCCCccce--EEEEeCCEEEEEcCCCCCCc------EeeeEEEEEEcCCEEEE
Confidence 9999999876 44889999999999865433 67899999999988765
No 16
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=5.3e-37 Score=264.56 Aligned_cols=280 Identities=20% Similarity=0.350 Sum_probs=221.9
Q ss_pred cEEEcCCCCCCCCceeEEEECCEEEEEeccCCCCC----ceeeEEEEECCCCceEecCCC--------C---CCCCceee
Q 013909 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDY----VHSHVDVYNFTDNKWVDRFDM--------P---KDMAHSHL 172 (434)
Q Consensus 108 ~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~----~~~~v~~yd~~t~~W~~~~~~--------~---~~~~r~~~ 172 (434)
+|+.--+--..|-.|+++.++.+||.|||+..... ---+|.++|..+-+|+++++- + .|-.|++|
T Consensus 3 ~WTVHLeGGPrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGH 82 (392)
T KOG4693|consen 3 TWTVHLEGGPRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGH 82 (392)
T ss_pred eEEEEecCCcccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCc
Confidence 45443333456789999999999999999843221 123599999999999998761 1 24469999
Q ss_pred EEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEec---CCCCCCcccceEEEECCEEEEEcCCCCCC--CCCCcc
Q 013909 173 GVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSI---PPLPSPRYSPATQLWRGRLHVMGGSKENR--HTPGLE 247 (434)
Q Consensus 173 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~---~~~p~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~ 247 (434)
+++.+++++|+.||.+... ...+.+++|||++++|.+. .-.|.+|.+|++|+.++.+|||||+..+. +.+++.
T Consensus 83 tvV~y~d~~yvWGGRND~e--gaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h 160 (392)
T KOG4693|consen 83 TVVEYQDKAYVWGGRNDDE--GACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTH 160 (392)
T ss_pred eEEEEcceEEEEcCccCcc--cccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccce
Confidence 9999999999999987753 3478999999999999876 35899999999999999999999986543 334444
Q ss_pred eEEEEeeccccccCceEEcc---CCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CC
Q 013909 248 HWSIAVKDGKALEKAWRTEI---PIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DE 323 (434)
Q Consensus 248 ~~~~~~~~~~~~~~~W~~~~---~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~ 323 (434)
.+| ..|.+|+.+. ..|+-+--|+++++++.+|||||...... +.-...+.+.+++..+| .+
T Consensus 161 ~ld-------~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~g--------pfHs~~e~Yc~~i~~ld~~T 225 (392)
T KOG4693|consen 161 VLD-------FATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESG--------PFHSIHEQYCDTIMALDLAT 225 (392)
T ss_pred eEe-------ccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCC--------CccchhhhhcceeEEEeccc
Confidence 444 6799999865 35677777799999999999999865431 22334566888999999 89
Q ss_pred CCeEEcCC---CCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEe---ccCCCceeeeee
Q 013909 324 MKWKVLPP---MPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVI---GKLPYRIKTTLT 397 (434)
Q Consensus 324 ~~W~~~~~---~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~---~~lp~~r~~~~~ 397 (434)
..|...++ .|..|..|+ +.+.|++||+|||+++.-+. -++++|.|||.+..|+.+ +.-|++|....+
T Consensus 226 ~aW~r~p~~~~~P~GRRSHS--~fvYng~~Y~FGGYng~ln~-----HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~ 298 (392)
T KOG4693|consen 226 GAWTRTPENTMKPGGRRSHS--TFVYNGKMYMFGGYNGTLNV-----HFNDLYCFDPKTSMWSVISVRGKYPSARRRQCS 298 (392)
T ss_pred cccccCCCCCcCCCcccccc--eEEEcceEEEecccchhhhh-----hhcceeecccccchheeeeccCCCCCcccceeE
Confidence 99998764 466677664 49999999999999876432 357999999999999998 458999999999
Q ss_pred EEECCEEEEEcccc
Q 013909 398 GFWDGWLYFTSGQR 411 (434)
Q Consensus 398 ~~~~~~l~v~GG~~ 411 (434)
++.++|+|+|||..
T Consensus 299 ~v~g~kv~LFGGTs 312 (392)
T KOG4693|consen 299 VVSGGKVYLFGGTS 312 (392)
T ss_pred EEECCEEEEecCCC
Confidence 99999999999955
No 17
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=2e-37 Score=295.96 Aligned_cols=247 Identities=18% Similarity=0.273 Sum_probs=183.8
Q ss_pred ceeecc-CC-CCcEEEcCCCCCCCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCce----EecCCCCCCCCcee
Q 013909 98 TFADLP-AP-DLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKW----VDRFDMPKDMAHSH 171 (434)
Q Consensus 98 ~~~~~~-~~-~~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W----~~~~~~~~~~~r~~ 171 (434)
+++.++ +. +.+|..+++||.+|..+++++++++||++||.++.. .++++++||+.+++| +.++++|. +|..
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~-~~~~v~~~d~~~~~w~~~~~~~~~lp~--~~~~ 116 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSE-RFSSVYRITLDESKEELICETIGNLPF--TFEN 116 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCCCC-CceeEEEEEEcCCceeeeeeEcCCCCc--CccC
Confidence 455543 22 237999999999999888899999999999987654 467899999999998 67888876 6888
Q ss_pred eEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCC-CCcccceEEEECCEEEEEcCCCCCCCCCCcceEE
Q 013909 172 LGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP-SPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWS 250 (434)
Q Consensus 172 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 250 (434)
|++++++++|||+||.... ...+++++||+.+++|+.+++|| .+|..|++++++++|||+||..+.. ..++++||
T Consensus 117 ~~~~~~~~~iYv~GG~~~~---~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~-~~~~~~yd 192 (323)
T TIGR03548 117 GSACYKDGTLYVGGGNRNG---KPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIA-YTDGYKYS 192 (323)
T ss_pred ceEEEECCEEEEEeCcCCC---ccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCcc-ccceEEEe
Confidence 9999999999999997543 23689999999999999999998 4899999999999999999986533 22344554
Q ss_pred EEeeccccccCceEEccCC-----CCCCCcee-EEEECCEEEEEcCCCCCCCCCCCCC--------------cc-ccccc
Q 013909 251 IAVKDGKALEKAWRTEIPI-----PRGGPHRA-CFVFNDRLFVVGGQEGDFMAKPGSP--------------IF-KCSRR 309 (434)
Q Consensus 251 ~~~~~~~~~~~~W~~~~~~-----p~~~~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~--------------~~-~~~~~ 309 (434)
+.+++|+.++++ |+.+..++ ++..+++|||+||.+.......+.. .+ .....
T Consensus 193 -------~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (323)
T TIGR03548 193 -------PKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPE 265 (323)
T ss_pred -------cCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCcc
Confidence 889999998764 44433333 4445899999999864310000000 00 00000
Q ss_pred cceeeCcEEEeC-CCCCeEEcCCCC-CCCCccceeEEEECCEEEEEcCcCCCC
Q 013909 310 HEVVYGDVYMLD-DEMKWKVLPPMP-KPNSHIECAWVIVNNSIIITGGTTEKH 360 (434)
Q Consensus 310 ~~~~~~~v~~yd-~~~~W~~~~~~p-~~r~~~~~~~~~~~~~i~v~GG~~~~~ 360 (434)
.....+++++|| .+++|+.++++| .+|..+ +++.++++||++||.....
T Consensus 266 ~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~--~~~~~~~~iyv~GG~~~pg 316 (323)
T TIGR03548 266 WYNWNRKILIYNVRTGKWKSIGNSPFFARCGA--ALLLTGNNIFSINGELKPG 316 (323)
T ss_pred ccCcCceEEEEECCCCeeeEcccccccccCch--heEEECCEEEEEeccccCC
Confidence 111346799999 888999999887 466654 5599999999999976544
No 18
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=4.2e-36 Score=300.05 Aligned_cols=210 Identities=19% Similarity=0.367 Sum_probs=182.6
Q ss_pred EEEECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEE
Q 013909 124 AIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLD 203 (434)
Q Consensus 124 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd 203 (434)
++.+++.||++||.+... ..+++++|||.+++|..+++|+. +|..+++++++++||++||.+. .+.+++||
T Consensus 267 ~~~~~~~lyviGG~~~~~-~~~~v~~Ydp~~~~W~~~~~m~~--~r~~~~~v~~~~~iYviGG~~~------~~sve~yd 337 (480)
T PHA02790 267 STHVGEVVYLIGGWMNNE-IHNNAIAVNYISNNWIPIPPMNS--PRLYASGVPANNKLYVVGGLPN------PTSVERWF 337 (480)
T ss_pred eEEECCEEEEEcCCCCCC-cCCeEEEEECCCCEEEECCCCCc--hhhcceEEEECCEEEEECCcCC------CCceEEEE
Confidence 445899999999986543 45679999999999999999987 7888899999999999999743 25689999
Q ss_pred CCCCceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEECC
Q 013909 204 SETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFND 283 (434)
Q Consensus 204 ~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~ 283 (434)
|.+++|+.+++||.+|..|++++++++|||+||..+. ...+++|+ |.+++|+..+++|.++..++++++++
T Consensus 338 p~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~--~~~ve~yd-------p~~~~W~~~~~m~~~r~~~~~~~~~~ 408 (480)
T PHA02790 338 HGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET--DTTTEYLL-------PNHDQWQFGPSTYYPHYKSCALVFGR 408 (480)
T ss_pred CCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC--CccEEEEe-------CCCCEEEeCCCCCCccccceEEEECC
Confidence 9999999999999999999999999999999998643 34566666 88999999999998888889999999
Q ss_pred EEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCC
Q 013909 284 RLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPM 362 (434)
Q Consensus 284 ~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~ 362 (434)
+|||+||. +++|| .+++|+.+++||.||..+++ ++++|+||++||.+...
T Consensus 409 ~IYv~GG~-------------------------~e~ydp~~~~W~~~~~m~~~r~~~~~--~v~~~~IYviGG~~~~~-- 459 (480)
T PHA02790 409 RLFLVGRN-------------------------AEFYCESSNTWTLIDDPIYPRDNPEL--IIVDNKLLLIGGFYRGS-- 459 (480)
T ss_pred EEEEECCc-------------------------eEEecCCCCcEeEcCCCCCCccccEE--EEECCEEEEECCcCCCc--
Confidence 99999983 56789 88999999999999997754 89999999999987433
Q ss_pred ccceeeeccEEEEECCCCceEEe
Q 013909 363 TKRMILVGEVFQFHLDSLTWSVI 385 (434)
Q Consensus 363 ~~~~~~~~~v~~yd~~~~~W~~~ 385 (434)
.++.+++|||++++|+..
T Consensus 460 -----~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 460 -----YIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred -----ccceEEEEECCCCeEEec
Confidence 456899999999999864
No 19
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.4e-35 Score=302.46 Aligned_cols=265 Identities=17% Similarity=0.283 Sum_probs=215.5
Q ss_pred CEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCc
Q 013909 129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK 208 (434)
Q Consensus 129 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~ 208 (434)
..+++.||.. . ....+..|++.+++|..+++.+. +..+++++.+++||++||..... ...+++++||+.+++
T Consensus 251 ~~~~~~~g~~--~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~lyv~GG~~~~~--~~~~~v~~yd~~~~~ 322 (534)
T PHA03098 251 SIIYIHITMS--I-FTYNYITNYSPLSEINTIIDIHY---VYCFGSVVLNNVIYFIGGMNKNN--LSVNSVVSYDTKTKS 322 (534)
T ss_pred cceEeecccc--h-hhceeeecchhhhhcccccCccc---cccceEEEECCEEEEECCCcCCC--CeeccEEEEeCCCCe
Confidence 3455555554 1 23346789999999998876553 44578899999999999986543 245789999999999
Q ss_pred eEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEECCEEEEE
Q 013909 209 WDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVV 288 (434)
Q Consensus 209 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~ 288 (434)
|+.+++||.+|..|+++.++++||++||..+....+++++|+ +.+++|+..+++|.++..++++.++++||++
T Consensus 323 W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd-------~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~ 395 (534)
T PHA03098 323 WNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWK-------PGESKWREEPPLIFPRYNPCVVNVNNLIYVI 395 (534)
T ss_pred eeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEc-------CCCCceeeCCCcCcCCccceEEEECCEEEEE
Confidence 999999999999999999999999999987655566666666 7899999999999999888999999999999
Q ss_pred cCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCcccee
Q 013909 289 GGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMI 367 (434)
Q Consensus 289 GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~ 367 (434)
||...... .++++++|| .+++|+.++++|.+|..+. ++..+++|||+||.+......
T Consensus 396 GG~~~~~~----------------~~~~v~~yd~~t~~W~~~~~~p~~r~~~~--~~~~~~~iyv~GG~~~~~~~~---- 453 (534)
T PHA03098 396 GGISKNDE----------------LLKTVECFSLNTNKWSKGSPLPISHYGGC--AIYHDGKIYVIGGISYIDNIK---- 453 (534)
T ss_pred CCcCCCCc----------------ccceEEEEeCCCCeeeecCCCCccccCce--EEEECCEEEEECCccCCCCCc----
Confidence 99754321 367899999 7889999999999988764 488999999999986543211
Q ss_pred eeccEEEEECCCCceEEeccCCCceeeeeeEEECCEEEEEccccCCC-CCCCchhhhhhccccc
Q 013909 368 LVGEVFQFHLDSLTWSVIGKLPYRIKTTLTGFWDGWLYFTSGQRDRG-PENPQPRKVIGEMWRT 430 (434)
Q Consensus 368 ~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~l~v~GG~~~~~-~~~~~~~~~~~~~w~~ 430 (434)
.++++++||+++++|+.++++|.+|..++++.++++||++||..... ..+-.++....+.|+.
T Consensus 454 ~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 517 (534)
T PHA03098 454 VYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTL 517 (534)
T ss_pred ccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEe
Confidence 24579999999999999999999999999999999999999987644 3444556777778863
No 20
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=1.6e-33 Score=281.45 Aligned_cols=208 Identities=18% Similarity=0.293 Sum_probs=179.3
Q ss_pred EEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEe
Q 013909 174 VVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAV 253 (434)
Q Consensus 174 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~ 253 (434)
++..++.||++||.+.. ...+.+++|||.+++|..+++||.+|..+++++++++||++||..+. .++++|+
T Consensus 267 ~~~~~~~lyviGG~~~~---~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~---~sve~yd--- 337 (480)
T PHA02790 267 STHVGEVVYLIGGWMNN---EIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNP---TSVERWF--- 337 (480)
T ss_pred eEEECCEEEEEcCCCCC---CcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCC---CceEEEE---
Confidence 35589999999998653 34688999999999999999999999999999999999999997532 4567776
Q ss_pred eccccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCC
Q 013909 254 KDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPM 332 (434)
Q Consensus 254 ~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~ 332 (434)
|.+++|+.++|+|.++..+++++++++||++||.... .+.+++|| .+++|+.+++|
T Consensus 338 ----p~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~-------------------~~~ve~ydp~~~~W~~~~~m 394 (480)
T PHA02790 338 ----HGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET-------------------DTTTEYLLPNHDQWQFGPST 394 (480)
T ss_pred ----CCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC-------------------CccEEEEeCCCCEEEeCCCC
Confidence 7899999999999999888999999999999997532 24689999 78899999999
Q ss_pred CCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccCCCceeeeeeEEECCEEEEEccccC
Q 013909 333 PKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKLPYRIKTTLTGFWDGWLYFTSGQRD 412 (434)
Q Consensus 333 p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~l~v~GG~~~ 412 (434)
|.||..++ +++++++|||+||. +++|||++++|+.+++||.+|..+++++++|+||++||...
T Consensus 395 ~~~r~~~~--~~~~~~~IYv~GG~---------------~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~ 457 (480)
T PHA02790 395 YYPHYKSC--ALVFGRRLFLVGRN---------------AEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYR 457 (480)
T ss_pred CCccccce--EEEECCEEEEECCc---------------eEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCC
Confidence 99999764 48899999999982 57899999999999999999999999999999999999874
Q ss_pred CC-CCCCchhhhhhccccc
Q 013909 413 RG-PENPQPRKVIGEMWRT 430 (434)
Q Consensus 413 ~~-~~~~~~~~~~~~~w~~ 430 (434)
.+ ..+..+|....+.|+.
T Consensus 458 ~~~~~~ve~Yd~~~~~W~~ 476 (480)
T PHA02790 458 GSYIDTIEVYNNRTYSWNI 476 (480)
T ss_pred CcccceEEEEECCCCeEEe
Confidence 33 3456677778888864
No 21
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.97 E-value=2.1e-29 Score=250.48 Aligned_cols=267 Identities=24% Similarity=0.431 Sum_probs=213.1
Q ss_pred CCCCCCCCceeEEEECCEEEEEeccCCCCCcee-eEEEEECCCCceEecCC-CCCCCCceeeEEEEeCCEEEEEeccCCC
Q 013909 113 PSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHS-HVDVYNFTDNKWVDRFD-MPKDMAHSHLGVVSDGRYIYIVSGQYGP 190 (434)
Q Consensus 113 ~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~-~v~~yd~~t~~W~~~~~-~~~~~~r~~~~~~~~~~~lyv~GG~~~~ 190 (434)
...|.+|..|+++.+++++|||||........+ ++|++|..+..|..... ...|.+|.+|+++.++++||+|||.+..
T Consensus 55 ~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~ 134 (482)
T KOG0379|consen 55 GVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKK 134 (482)
T ss_pred CCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCC
Confidence 346889999999999999999999976554333 69999999999987643 3335589999999999999999998752
Q ss_pred CCCCCCceeEEEECCCCceEecC---CCCCCcccceEEEECCEEEEEcCCCCCC-CCCCcceEEEEeeccccccCceEEc
Q 013909 191 QCRGPTSRTFVLDSETRKWDSIP---PLPSPRYSPATQLWRGRLHVMGGSKENR-HTPGLEHWSIAVKDGKALEKAWRTE 266 (434)
Q Consensus 191 ~~~~~~~~~~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~~~~~~~~~~~~~~W~~~ 266 (434)
....++++.||+.|++|+.+. .+|.+|.+|+++.++++||||||..... ..+++.+|| +.+.+|.++
T Consensus 135 --~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d-------~~~~~W~~~ 205 (482)
T KOG0379|consen 135 --YRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYD-------LETSTWSEL 205 (482)
T ss_pred --CCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeec-------cccccceec
Confidence 234789999999999999884 4689999999999999999999987655 566666666 678899985
Q ss_pred c---CCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcC---CCCCCCCcc
Q 013909 267 I---PIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLP---PMPKPNSHI 339 (434)
Q Consensus 267 ~---~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~---~~p~~r~~~ 339 (434)
. +.|.+|.+|++++++++++||||.+.. +.+++|+|++| .+.+|..+. .+|.||..|
T Consensus 206 ~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~----------------~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h 269 (482)
T KOG0379|consen 206 DTQGEAPSPRYGHAMVVVGNKLLVFGGGDDG----------------DVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGH 269 (482)
T ss_pred ccCCCCCCCCCCceEEEECCeEEEEeccccC----------------CceecceEeeecccceeeeccccCCCCCCccee
Confidence 3 456778888999999999999998732 24899999999 888999765 578999988
Q ss_pred ceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEecc----CCCceeeeeeEEEC----CEEEEEcccc
Q 013909 340 ECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGK----LPYRIKTTLTGFWD----GWLYFTSGQR 411 (434)
Q Consensus 340 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~----lp~~r~~~~~~~~~----~~l~v~GG~~ 411 (434)
.. +..+.+++++||...... +.+.++|.||.++..|..+.. .|.+|..+..+... ....++||..
T Consensus 270 ~~--~~~~~~~~l~gG~~~~~~-----~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (482)
T KOG0379|consen 270 SL--TVSGDHLLLFGGGTDPKQ-----EPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELIDELGKDGLGILGGNQ 342 (482)
T ss_pred ee--EEECCEEEEEcCCccccc-----ccccccccccccccceeeeeccccccccccccccceeeccCCccceeeecCcc
Confidence 65 699999999999876411 146799999999999999743 45666666555543 2444555533
No 22
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.97 E-value=3.4e-29 Score=228.44 Aligned_cols=258 Identities=20% Similarity=0.317 Sum_probs=198.5
Q ss_pred cCCCCCCCCceeEEEE--CCEEEEEeccCCCC---CceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeC-CEEEEEe
Q 013909 112 MPSAPVPRLDGAAIQI--KNLFYVFAGYGSLD---YVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDG-RYIYIVS 185 (434)
Q Consensus 112 ~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~---~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~-~~lyv~G 185 (434)
..+.|+||.++++++. .+.|++|||.--.. .+.++++.||..+++|..+.+...|.||+.|.++++- |.||+||
T Consensus 60 ~~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fG 139 (521)
T KOG1230|consen 60 SVPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFG 139 (521)
T ss_pred cCCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEec
Confidence 3457899999999877 56899999973322 3789999999999999998776667789999998875 8999999
Q ss_pred ccCCCC---CCCCCceeEEEECCCCceEecC--CCCCCcccceEEEECCEEEEEcCCCCC----CCCCCcceEEEEeecc
Q 013909 186 GQYGPQ---CRGPTSRTFVLDSETRKWDSIP--PLPSPRYSPATQLWRGRLHVMGGSKEN----RHTPGLEHWSIAVKDG 256 (434)
Q Consensus 186 G~~~~~---~~~~~~~~~~yd~~t~~W~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~~~~~~~~~ 256 (434)
|...+. .+....++|.||..+++|+++. .-|.||++|.+++...+|++|||+... .|.+++++|+
T Consensus 140 GEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~Fd------ 213 (521)
T KOG1230|consen 140 GEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFD------ 213 (521)
T ss_pred cccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEe------
Confidence 975432 2345689999999999999984 568999999999999999999998653 2344555555
Q ss_pred ccccCceEEccC---CCCCCCceeEEEE-CCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CC-----CCe
Q 013909 257 KALEKAWRTEIP---IPRGGPHRACFVF-NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DE-----MKW 326 (434)
Q Consensus 257 ~~~~~~W~~~~~---~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~-----~~W 326 (434)
..+-+|+++.| -|.+|+++++.+. +|.|||+||++.... +.........+|+|.++ .. -+|
T Consensus 214 -LdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~--------kK~~dKG~~hsDmf~L~p~~~~~dKw~W 284 (521)
T KOG1230|consen 214 -LDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRV--------KKDVDKGTRHSDMFLLKPEDGREDKWVW 284 (521)
T ss_pred -ccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhh--------hhhhhcCceeeeeeeecCCcCCCcceeE
Confidence 55889999755 3677777787777 999999999975421 11112234688999999 33 278
Q ss_pred EEcCC---CCCCCCccceeEEEECCEEEEEcCcCCC--CCCccceeeeccEEEEECCCCceEEe
Q 013909 327 KVLPP---MPKPNSHIECAWVIVNNSIIITGGTTEK--HPMTKRMILVGEVFQFHLDSLTWSVI 385 (434)
Q Consensus 327 ~~~~~---~p~~r~~~~~~~~~~~~~i~v~GG~~~~--~~~~~~~~~~~~v~~yd~~~~~W~~~ 385 (434)
+.+.+ -|.||.+++++ +..+++-+.|||.-.- ......+.|+|++|.||++.++|+..
T Consensus 285 ~kvkp~g~kPspRsgfsv~-va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 285 TKVKPSGVKPSPRSGFSVA-VAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred eeccCCCCCCCCCCceeEE-EecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 88864 58899988764 5567799999997542 22233456999999999999999864
No 23
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=1.9e-28 Score=228.68 Aligned_cols=277 Identities=22% Similarity=0.406 Sum_probs=210.4
Q ss_pred cEEEc----CCCCCCCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCceEec---CCCCCCCCceeeEEEEeCCE
Q 013909 108 EWEQM----PSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDR---FDMPKDMAHSHLGVVSDGRY 180 (434)
Q Consensus 108 ~W~~~----~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~---~~~~~~~~r~~~~~~~~~~~ 180 (434)
.|..+ .+.|.||++|.++.+.+-|.||||-+ +...+++.+||..+|+|..- .+.|. +-..|+++..+.+
T Consensus 18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGN--EGiiDELHvYNTatnqWf~PavrGDiPp--gcAA~GfvcdGtr 93 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGN--EGIIDELHVYNTATNQWFAPAVRGDIPP--GCAAFGFVCDGTR 93 (830)
T ss_pred ceEEEecccCCCCCccccchheeeeeeEEEecCCc--ccchhhhhhhccccceeecchhcCCCCC--chhhcceEecCce
Confidence 67765 45789999999999999999999965 33578899999999999743 34554 5667888889999
Q ss_pred EEEEeccCCCCCCCCCceeEEEECCCCceEecC-------CCCCCcccceEEEECCEEEEEcCCCCCC---------CCC
Q 013909 181 IYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP-------PLPSPRYSPATQLWRGRLHVMGGSKENR---------HTP 244 (434)
Q Consensus 181 lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~-------~~p~~r~~~~~~~~~~~iyv~GG~~~~~---------~~~ 244 (434)
||+|||..+.+ ...+++|.+-...-.|+++. ++|.||-+|+...+++|.|+|||..++. |++
T Consensus 94 ilvFGGMvEYG--kYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLn 171 (830)
T KOG4152|consen 94 ILVFGGMVEYG--KYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLN 171 (830)
T ss_pred EEEEccEeeec--cccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhc
Confidence 99999987654 34677766555555677773 4688999999999999999999985432 344
Q ss_pred CcceEEEEeeccccccCceEEc---cCCCCCCCceeEEEE------CCEEEEEcCCCCCCCCCCCCCccccccccceeeC
Q 013909 245 GLEHWSIAVKDGKALEKAWRTE---IPIPRGGPHRACFVF------NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYG 315 (434)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~W~~~---~~~p~~~~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (434)
+.++.++. - -+.--.|... ..+|.+|.+|.++.+ ..+|||+||+++. -+.
T Consensus 172 DlY~leL~--~-Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~------------------RLg 230 (830)
T KOG4152|consen 172 DLYILELR--P-GSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC------------------RLG 230 (830)
T ss_pred ceEEEEec--c-CCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc------------------ccc
Confidence 43333321 0 0122257763 346666667788887 4679999999986 488
Q ss_pred cEEEeC-CCCCeEEcC---CCCCCCCccceeEEEECCEEEEEcCcCCCC-------CCccceeeeccEEEEECCCCceEE
Q 013909 316 DVYMLD-DEMKWKVLP---PMPKPNSHIECAWVIVNNSIIITGGTTEKH-------PMTKRMILVGEVFQFHLDSLTWSV 384 (434)
Q Consensus 316 ~v~~yd-~~~~W~~~~---~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~-------~~~~~~~~~~~v~~yd~~~~~W~~ 384 (434)
|+|.+| ++.+|.+.. -.|.||+-|++ .+++++||||||+-.-. .-.+.+.-.+++-.+|+++..|+.
T Consensus 231 DLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa--~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~t 308 (830)
T KOG4152|consen 231 DLWTLDLDTLTWNKPSLSGVAPLPRSLHSA--TTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWET 308 (830)
T ss_pred ceeEEecceeecccccccCCCCCCcccccc--eeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheee
Confidence 999999 899999864 46788998865 89999999999964211 122344456778889999999998
Q ss_pred ec-------cCCCceeeeeeEEECCEEEEEccccCC
Q 013909 385 IG-------KLPYRIKTTLTGFWDGWLYFTSGQRDR 413 (434)
Q Consensus 385 ~~-------~lp~~r~~~~~~~~~~~l~v~GG~~~~ 413 (434)
+- .+|.+|..|.++.++.++|+-.|.+.-
T Consensus 309 l~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGY 344 (830)
T KOG4152|consen 309 LLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGY 344 (830)
T ss_pred eeeccccccccccccccceeEEeccEEEEEeccchh
Confidence 72 378999999999999999999997763
No 24
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.96 E-value=2.3e-27 Score=235.97 Aligned_cols=217 Identities=22% Similarity=0.370 Sum_probs=181.0
Q ss_pred CCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecC---CCCCCcccceEEEECCEEEEEcCCCC-C
Q 013909 165 KDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP---PLPSPRYSPATQLWRGRLHVMGGSKE-N 240 (434)
Q Consensus 165 ~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~-~ 240 (434)
.|.+|..|+++.+++++|||||.......... +++++|.++..|.... ..|.+|.+|+++.++++||+|||... .
T Consensus 57 ~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~-dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~ 135 (482)
T KOG0379|consen 57 GPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDL-DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKY 135 (482)
T ss_pred CcchhhccceeEECCEEEEECCCCCCCccccc-eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCC
Confidence 35589999999999999999998766543222 6999999999998874 56889999999999999999999985 3
Q ss_pred CCCCCcceEEEEeeccccccCceEEccC---CCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcE
Q 013909 241 RHTPGLEHWSIAVKDGKALEKAWRTEIP---IPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDV 317 (434)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~W~~~~~---~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v 317 (434)
...+.+..|| +.+.+|+.+.+ .|.++.+|++++++++||||||....+. .++++
T Consensus 136 ~~~~~l~~~d-------~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~----------------~~ndl 192 (482)
T KOG0379|consen 136 RNLNELHSLD-------LSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGD----------------SLNDL 192 (482)
T ss_pred CChhheEecc-------CCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCccc----------------ceeee
Confidence 3334444444 78999998654 4778888899999999999999886531 68999
Q ss_pred EEeC-CCCCeEEcC---CCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEec---cCCC
Q 013909 318 YMLD-DEMKWKVLP---PMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIG---KLPY 390 (434)
Q Consensus 318 ~~yd-~~~~W~~~~---~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~---~lp~ 390 (434)
|+|| .+.+|.++. +.|.||..|.+ ++++++++|+||.+.... +++|++.+|+.+.+|..+. .+|.
T Consensus 193 ~i~d~~~~~W~~~~~~g~~P~pR~gH~~--~~~~~~~~v~gG~~~~~~------~l~D~~~ldl~~~~W~~~~~~g~~p~ 264 (482)
T KOG0379|consen 193 HIYDLETSTWSELDTQGEAPSPRYGHAM--VVVGNKLLVFGGGDDGDV------YLNDVHILDLSTWEWKLLPTGGDLPS 264 (482)
T ss_pred eeeccccccceecccCCCCCCCCCCceE--EEECCeEEEEeccccCCc------eecceEeeecccceeeeccccCCCCC
Confidence 9999 888999985 57788887754 999999999999883332 8999999999999999764 4899
Q ss_pred ceeeeeeEEECCEEEEEccccCC
Q 013909 391 RIKTTLTGFWDGWLYFTSGQRDR 413 (434)
Q Consensus 391 ~r~~~~~~~~~~~l~v~GG~~~~ 413 (434)
+|+.|..+..+.+++++||...+
T Consensus 265 ~R~~h~~~~~~~~~~l~gG~~~~ 287 (482)
T KOG0379|consen 265 PRSGHSLTVSGDHLLLFGGGTDP 287 (482)
T ss_pred CcceeeeEEECCEEEEEcCCccc
Confidence 99999999999999999998876
No 25
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=5.5e-27 Score=218.90 Aligned_cols=281 Identities=15% Similarity=0.193 Sum_probs=203.2
Q ss_pred CCceEEe----cCCCCCccccceeeeE---EEccCCcchhhhhccceeeccCCCCcEEE---cCCCCCCCCceeEEEECC
Q 013909 60 KSGVVVI----PHVNATKIDRQRESVA---VIDKKGQDAERFLSATFADLPAPDLEWEQ---MPSAPVPRLDGAAIQIKN 129 (434)
Q Consensus 60 ~~~W~~~----~~~~~~r~~~~~~g~~---v~~~~~~~~~~~~~~~~~~~~~~~~~W~~---~~~~p~~R~~~~~~~~~~ 129 (434)
.-+|..+ .+.+.+||+|...... ++.+++.+ .+-+.+..|+.++++|.. ..++|.+...|..+..+.
T Consensus 16 ~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNE---GiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGt 92 (830)
T KOG4152|consen 16 VVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNE---GIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGT 92 (830)
T ss_pred ccceEEEecccCCCCCccccchheeeeeeEEEecCCcc---cchhhhhhhccccceeecchhcCCCCCchhhcceEecCc
Confidence 3467775 3556677776655433 33333333 244589999999999964 456899999999999999
Q ss_pred EEEEEeccCCCCCceeeEEEEECCCCceEecCC-----CCCCCCceeeEEEEeCCEEEEEeccCCCC------CCCCCce
Q 013909 130 LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFD-----MPKDMAHSHLGVVSDGRYIYIVSGQYGPQ------CRGPTSR 198 (434)
Q Consensus 130 ~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~-----~~~~~~r~~~~~~~~~~~lyv~GG~~~~~------~~~~~~~ 198 (434)
+||+|||+...+..+++++..-...-+|.++.+ -+.|.+|.+|+..+++++-|+|||..... -...++|
T Consensus 93 rilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnD 172 (830)
T KOG4152|consen 93 RILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLND 172 (830)
T ss_pred eEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcc
Confidence 999999998888888877666666667777743 23467899999999999999999973321 1245689
Q ss_pred eEEEECCCC----ceEec---CCCCCCcccceEEEE------CCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEE
Q 013909 199 TFVLDSETR----KWDSI---PPLPSPRYSPATQLW------RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRT 265 (434)
Q Consensus 199 ~~~yd~~t~----~W~~~---~~~p~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~ 265 (434)
+|..++.-. .|... ..+|.+|..|+++.+ ..|+||+||.++.+ +.+++..| ..+.+|++
T Consensus 173 lY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~R-LgDLW~Ld-------l~Tl~W~k 244 (830)
T KOG4152|consen 173 LYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCR-LGDLWTLD-------LDTLTWNK 244 (830)
T ss_pred eEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccccc-ccceeEEe-------cceeeccc
Confidence 998887643 48765 578999999999987 35899999998754 44444444 45889987
Q ss_pred -----ccCCCCCCCceeEEEECCEEEEEcCCCCC----CCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcC-----
Q 013909 266 -----EIPIPRGGPHRACFVFNDRLFVVGGQEGD----FMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLP----- 330 (434)
Q Consensus 266 -----~~~~p~~~~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~----- 330 (434)
++||||..+ +++.++++||||||.-.- .+.+++ +..-...+.+-++| +++.|+.+-
T Consensus 245 p~~~G~~PlPRSLH--sa~~IGnKMyvfGGWVPl~~~~~~~~~h-------ekEWkCTssl~clNldt~~W~tl~~d~~e 315 (830)
T KOG4152|consen 245 PSLSGVAPLPRSLH--SATTIGNKMYVFGGWVPLVMDDVKVATH-------EKEWKCTSSLACLNLDTMAWETLLMDTLE 315 (830)
T ss_pred ccccCCCCCCcccc--cceeecceeEEecceeeeeccccccccc-------cceeeeccceeeeeecchheeeeeecccc
Confidence 467777766 999999999999996421 111111 12223566788888 889999873
Q ss_pred CCCCCCCccceeEEEECCEEEEEcCcCCCC
Q 013909 331 PMPKPNSHIECAWVIVNNSIIITGGTTEKH 360 (434)
Q Consensus 331 ~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~ 360 (434)
+-..||.+.++|++.++.+||+..|.++..
T Consensus 316 d~tiPR~RAGHCAvAigtRlYiWSGRDGYr 345 (830)
T KOG4152|consen 316 DNTIPRARAGHCAVAIGTRLYIWSGRDGYR 345 (830)
T ss_pred ccccccccccceeEEeccEEEEEeccchhh
Confidence 222555555667799999999999988754
No 26
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.95 E-value=1.9e-26 Score=210.60 Aligned_cols=307 Identities=18% Similarity=0.240 Sum_probs=209.5
Q ss_pred hhhccceeeccCCCCcEEEcCC--CCCCCCceeEEEEC-CEEEEEeccCCCC-----CceeeEEEEECCCCceEecCCCC
Q 013909 93 RFLSATFADLPAPDLEWEQMPS--APVPRLDGAAIQIK-NLFYVFAGYGSLD-----YVHSHVDVYNFTDNKWVDRFDMP 164 (434)
Q Consensus 93 ~~~~~~~~~~~~~~~~W~~~~~--~p~~R~~~~~~~~~-~~iyv~GG~~~~~-----~~~~~v~~yd~~t~~W~~~~~~~ 164 (434)
..+-++++.|+...++|+++.+ .|.||++|+++++. |.+|+|||.-... +-..++|.||..+++|+++....
T Consensus 94 T~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g 173 (521)
T KOG1230|consen 94 THVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG 173 (521)
T ss_pred EEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCC
Confidence 4455699999999999998754 78899999998885 8999999974322 24678999999999999998777
Q ss_pred CCCCceeeEEEEeCCEEEEEeccCCC-CCCCCCceeEEEECCCCceEecCC---CCCCcccceEEEE-CCEEEEEcCCCC
Q 013909 165 KDMAHSHLGVVSDGRYIYIVSGQYGP-QCRGPTSRTFVLDSETRKWDSIPP---LPSPRYSPATQLW-RGRLHVMGGSKE 239 (434)
Q Consensus 165 ~~~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~~~~yd~~t~~W~~~~~---~p~~r~~~~~~~~-~~~iyv~GG~~~ 239 (434)
.|.+|++|-+++..++|++|||+... ......++||+||+.|-+|+++.+ -|.||++|++.+. .+.|||.||++.
T Consensus 174 ~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK 253 (521)
T KOG1230|consen 174 GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSK 253 (521)
T ss_pred CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhH
Confidence 78899999999999999999998654 334567999999999999999954 4899999999988 999999999864
Q ss_pred CC-------CCCCcceEEEEeeccccccCceEEccCC---CCCCCceeEEEE-CCEEEEEcCCCCCCCCCCCCCcccccc
Q 013909 240 NR-------HTPGLEHWSIAVKDGKALEKAWRTEIPI---PRGGPHRACFVF-NDRLFVVGGQEGDFMAKPGSPIFKCSR 308 (434)
Q Consensus 240 ~~-------~~~~~~~~~~~~~~~~~~~~~W~~~~~~---p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~ 308 (434)
.. .....+.|.+..-+.+...-.|+.+.|. |.+|.++++++. +++-+.|||...-.. ....
T Consensus 254 ~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~ee--------eeEs 325 (521)
T KOG1230|consen 254 QRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEE--------EEES 325 (521)
T ss_pred hhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccc--------cchh
Confidence 32 1223445555421111112568886552 556666677776 669999999754211 1122
Q ss_pred ccceeeCcEEEeC-CCCCeEEcC--CCC------------------CCC----------CccceeEEEECCEEEEEcCcC
Q 013909 309 RHEVVYGDVYMLD-DEMKWKVLP--PMP------------------KPN----------SHIECAWVIVNNSIIITGGTT 357 (434)
Q Consensus 309 ~~~~~~~~v~~yd-~~~~W~~~~--~~p------------------~~r----------~~~~~~~~~~~~~i~v~GG~~ 357 (434)
....++||+|.|| ..++|.... ... .|+ .....+++...+.+++.-+..
T Consensus 326 l~g~F~NDLy~fdlt~nrW~~~qlq~~~S~~~~~r~~~Kd~~k~~~~~~~G~~tkd~e~~~v~k~v~~~~d~l~i~v~v~ 405 (521)
T KOG1230|consen 326 LSGEFFNDLYFFDLTRNRWSEGQLQGKKSPATSRRRSRKDQEKELQRPTVGPNTKDLEVQAVDKAVCPTTDSLFIYVGVW 405 (521)
T ss_pred hhhhhhhhhhheecccchhhHhhhccCCCCccccccccccccccccCcccCCCcccccceecceeeeecCCceEEEeecC
Confidence 3456899999999 888996542 000 000 001123344455555533333
Q ss_pred CCCCCccceeeeccEEEEECCCCceEEe-----ccCCCceeeeeeEEECCEEEEEccccCCCCCCC
Q 013909 358 EKHPMTKRMILVGEVFQFHLDSLTWSVI-----GKLPYRIKTTLTGFWDGWLYFTSGQRDRGPENP 418 (434)
Q Consensus 358 ~~~~~~~~~~~~~~v~~yd~~~~~W~~~-----~~lp~~r~~~~~~~~~~~l~v~GG~~~~~~~~~ 418 (434)
+.+... |+...+.=+.. .+-+.+|.....++..|.+||.||..+-+.+.+
T Consensus 406 ~~g~~~-----------~p~s~~e~s~~~~~e~~~~~~pr~d~~~~v~~G~~~i~gGi~ee~d~q~ 460 (521)
T KOG1230|consen 406 EPGEAD-----------YPESEDEASREGDREPDEGEFPRMDDELSVKVGVLYIGGGIFEERDWQP 460 (521)
T ss_pred CCCCCC-----------CcccccccccccCCCCCCCCCccCCCccCcccceEEecCCCcccccccc
Confidence 322211 11111110111 235678888888889999999998666544443
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.93 E-value=8e-25 Score=197.53 Aligned_cols=297 Identities=19% Similarity=0.286 Sum_probs=222.2
Q ss_pred EEcCCCCCCCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCC--CceEecCCCCCCCCceeeEEEEeCCEEEEEecc
Q 013909 110 EQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTD--NKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQ 187 (434)
Q Consensus 110 ~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t--~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~ 187 (434)
.++|++|.+--+.+.+.+++.+||-=|..+.. .+..|++. ..|++++..|.+ +|.+...++++++||+|||.
T Consensus 28 ~~lPdlPvg~KnG~Ga~ig~~~YVGLGs~G~a-----fy~ldL~~~~k~W~~~a~FpG~-~rnqa~~a~~~~kLyvFgG~ 101 (381)
T COG3055 28 GQLPDLPVGFKNGAGALIGDTVYVGLGSAGTA-----FYVLDLKKPGKGWTKIADFPGG-ARNQAVAAVIGGKLYVFGGY 101 (381)
T ss_pred ccCCCCCccccccccceecceEEEEeccCCcc-----ceehhhhcCCCCceEcccCCCc-ccccchheeeCCeEEEeecc
Confidence 45788999888888888999999977754433 45666654 579999999875 69999999999999999997
Q ss_pred CCCCC--CCCCceeEEEECCCCceEecCC-CCCCcccceEEEECC-EEEEEcCCCCCC----------------------
Q 013909 188 YGPQC--RGPTSRTFVLDSETRKWDSIPP-LPSPRYSPATQLWRG-RLHVMGGSKENR---------------------- 241 (434)
Q Consensus 188 ~~~~~--~~~~~~~~~yd~~t~~W~~~~~-~p~~r~~~~~~~~~~-~iyv~GG~~~~~---------------------- 241 (434)
..... ....+++++|||.+|+|+++.. .|....+++++.+++ +||++||.+..-
T Consensus 102 Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~ 181 (381)
T COG3055 102 GKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKII 181 (381)
T ss_pred ccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHH
Confidence 54332 4556999999999999999854 577788889998888 999999985310
Q ss_pred -----CCCCcceEEEEeeccccccCceEEccCCCCC-CCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeC
Q 013909 242 -----HTPGLEHWSIAVKDGKALEKAWRTEIPIPRG-GPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYG 315 (434)
Q Consensus 242 -----~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~-~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (434)
-......|+-++..|+|.+++|+.....|-. .++++++.-++++.++-|+-..+ . ...
T Consensus 182 ~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpG-----------L-----Rt~ 245 (381)
T COG3055 182 AHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPG-----------L-----RTA 245 (381)
T ss_pred HHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCC-----------c-----ccc
Confidence 0123345566677788999999998766633 23334455588899999876443 2 234
Q ss_pred cEEEeC-C--CCCeEEcCCCCCCCCccceeE-----EEECCEEEEEcCcCCCCC------------CccceeeeccEEEE
Q 013909 316 DVYMLD-D--EMKWKVLPPMPKPNSHIECAW-----VIVNNSIIITGGTTEKHP------------MTKRMILVGEVFQF 375 (434)
Q Consensus 316 ~v~~yd-~--~~~W~~~~~~p~~r~~~~~~~-----~~~~~~i~v~GG~~~~~~------------~~~~~~~~~~v~~y 375 (434)
.++.++ . ..+|..++++|.|.....-.+ -..++.++|.||.+..+. ......+.++|+.+
T Consensus 246 ~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~ 325 (381)
T COG3055 246 EVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIF 325 (381)
T ss_pred ceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEE
Confidence 567777 3 339999998887765331111 245889999999765321 00112256789999
Q ss_pred ECCCCceEEeccCCCceeeeeeEEECCEEEEEccccCCCCCCCchhhhhhccccccc
Q 013909 376 HLDSLTWSVIGKLPYRIKTTLTGFWDGWLYFTSGQRDRGPENPQPRKVIGEMWRTKL 432 (434)
Q Consensus 376 d~~~~~W~~~~~lp~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~w~~~~ 432 (434)
| .+.|+.++.||.++....++..+++||++||++.+|+++.+++++..+ ..||
T Consensus 326 d--~g~Wk~~GeLp~~l~YG~s~~~nn~vl~IGGE~~~Gka~~~v~~l~~~--gk~l 378 (381)
T COG3055 326 D--NGSWKIVGELPQGLAYGVSLSYNNKVLLIGGETSGGKATTRVYSLSWD--GKKL 378 (381)
T ss_pred c--CCceeeecccCCCccceEEEecCCcEEEEccccCCCeeeeeEEEEEEc--CceE
Confidence 8 999999999999999999999999999999999999999999988766 4444
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.84 E-value=2.8e-19 Score=161.87 Aligned_cols=268 Identities=19% Similarity=0.234 Sum_probs=187.8
Q ss_pred ceeeccC--CCCcEEEcCCCC-CCCCceeEEEECCEEEEEeccCCC----CCceeeEEEEECCCCceEecCCCCCCCCce
Q 013909 98 TFADLPA--PDLEWEQMPSAP-VPRLDGAAIQIKNLFYVFAGYGSL----DYVHSHVDVYNFTDNKWVDRFDMPKDMAHS 170 (434)
Q Consensus 98 ~~~~~~~--~~~~W~~~~~~p-~~R~~~~~~~~~~~iyv~GG~~~~----~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~ 170 (434)
.++..|. ....|++++..| .+|....++.++++||||||..-. ....+++++|||.+|+|+++.... |+...
T Consensus 59 afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~s-P~gl~ 137 (381)
T COG3055 59 AFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRS-PTGLV 137 (381)
T ss_pred cceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheecccc-ccccc
Confidence 4444443 456999999987 578899999999999999998533 237889999999999999986543 44677
Q ss_pred eeEEEEeCC-EEEEEeccCCCC-------------------------------CCCCCceeEEEECCCCceEecCCCC-C
Q 013909 171 HLGVVSDGR-YIYIVSGQYGPQ-------------------------------CRGPTSRTFVLDSETRKWDSIPPLP-S 217 (434)
Q Consensus 171 ~~~~~~~~~-~lyv~GG~~~~~-------------------------------~~~~~~~~~~yd~~t~~W~~~~~~p-~ 217 (434)
+++++.+++ +||++||++... .......++.|||++++|+.+...| .
T Consensus 138 G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~ 217 (381)
T COG3055 138 GASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFY 217 (381)
T ss_pred cceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCccc
Confidence 888888877 999999974211 0112357899999999999998777 5
Q ss_pred CcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCC-------ceeEEEECCEEEEEcC
Q 013909 218 PRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGP-------HRACFVFNDRLFVVGG 290 (434)
Q Consensus 218 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~-------~~~~~~~~~~iyv~GG 290 (434)
++++.+.+.-++++.++-|.--.. +.+.+.+..+ +.-...+|..+.++|.+.. ++-.-..++.+.|.||
T Consensus 218 ~~aGsa~~~~~n~~~lInGEiKpG-LRt~~~k~~~---~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GG 293 (381)
T COG3055 218 GNAGSAVVIKGNKLTLINGEIKPG-LRTAEVKQAD---FGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGG 293 (381)
T ss_pred CccCcceeecCCeEEEEcceecCC-ccccceeEEE---eccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecC
Confidence 677766666788899998864332 3333333322 1145678999877654332 1122235888999999
Q ss_pred CCCCCC--CCCCCCccccccccceeeCcEEEeCCCCCeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceee
Q 013909 291 QEGDFM--AKPGSPIFKCSRRHEVVYGDVYMLDDEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMIL 368 (434)
Q Consensus 291 ~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~yd~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~ 368 (434)
.+-.+. ...+...+.+........++||.+| .+.|+.+..+|.++..- ..+..++.||++||++.... .
T Consensus 294 AnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d-~g~Wk~~GeLp~~l~YG--~s~~~nn~vl~IGGE~~~Gk------a 364 (381)
T COG3055 294 ANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD-NGSWKIVGELPQGLAYG--VSLSYNNKVLLIGGETSGGK------A 364 (381)
T ss_pred CCChhHHHHHHhcccccccchhhhhhceEEEEc-CCceeeecccCCCccce--EEEecCCcEEEEccccCCCe------e
Confidence 654322 1111224445555666888999997 77999999999987753 33788999999999988775 4
Q ss_pred eccEEEEECCC
Q 013909 369 VGEVFQFHLDS 379 (434)
Q Consensus 369 ~~~v~~yd~~~ 379 (434)
+.+++..-...
T Consensus 365 ~~~v~~l~~~g 375 (381)
T COG3055 365 TTRVYSLSWDG 375 (381)
T ss_pred eeeEEEEEEcC
Confidence 44555544433
No 29
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.68 E-value=8.8e-18 Score=157.42 Aligned_cols=301 Identities=16% Similarity=0.220 Sum_probs=197.6
Q ss_pred CCcEEEcCC----------CCCCCCceeEEEECC--EEEEEeccCCCCCceeeEEEEECCCCceEecCCCC-CCCCceee
Q 013909 106 DLEWEQMPS----------APVPRLDGAAIQIKN--LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP-KDMAHSHL 172 (434)
Q Consensus 106 ~~~W~~~~~----------~p~~R~~~~~~~~~~--~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~-~~~~r~~~ 172 (434)
...|.+++. -|..|.+|.++.-.+ .||++||+++... +.+.|.|+...+.|+.+..-. .|..|.+|
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~-l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCH 316 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQD-LADFWAYSVKENQWTCINRDTEGPGARSCH 316 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchh-HHHHHhhcCCcceeEEeecCCCCCcchhhh
Confidence 347766543 367789999998855 9999999999886 456999999999999885433 45589999
Q ss_pred EEEEeCC--EEEEEeccCCCCCC---CCCceeEEEECCCCceEecC------CCCCCcccceEEEECCE--EEEEcCCCC
Q 013909 173 GVVSDGR--YIYIVSGQYGPQCR---GPTSRTFVLDSETRKWDSIP------PLPSPRYSPATQLWRGR--LHVMGGSKE 239 (434)
Q Consensus 173 ~~~~~~~--~lyv~GG~~~~~~~---~~~~~~~~yd~~t~~W~~~~------~~p~~r~~~~~~~~~~~--iyv~GG~~~ 239 (434)
-++..-. +||+.|-+-+.... ..-+++|+||..++.|..+. .-|...+.|.+++.+++ |||+||+.-
T Consensus 317 RMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~ 396 (723)
T KOG2437|consen 317 RMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRIL 396 (723)
T ss_pred hhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeec
Confidence 9998754 99999987554322 23479999999999999884 24667889999999988 999999864
Q ss_pred CCCCCCcceEEEEeeccccccCceEEccC----------CCCCCCceeEE--EECCEEEEEcCCCCCCCCCCCCCccccc
Q 013909 240 NRHTPGLEHWSIAVKDGKALEKAWRTEIP----------IPRGGPHRACF--VFNDRLFVVGGQEGDFMAKPGSPIFKCS 307 (434)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~W~~~~~----------~p~~~~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~~ 307 (434)
.... ..|. .+|.|+.....|..... ....|-++++- .-+..+|++||.....
T Consensus 397 ~~~e---~~f~-GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~------------ 460 (723)
T KOG2437|consen 397 TCNE---PQFS-GLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKT------------ 460 (723)
T ss_pred cCCC---cccc-ceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccce------------
Confidence 3221 1111 13333367788876431 11233333433 3488899999987553
Q ss_pred cccceeeCcEEEeC-CCCCeEEc-------CCC-CCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECC
Q 013909 308 RRHEVVYGDVYMLD-DEMKWKVL-------PPM-PKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLD 378 (434)
Q Consensus 308 ~~~~~~~~~v~~yd-~~~~W~~~-------~~~-p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~ 378 (434)
-++-.++|| ....=..+ +.+ |.+-....+.+-..+.+|.+.-|......- +.....+.+|+|+..
T Consensus 461 -----El~L~f~y~I~~E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~-~e~~~rns~wi~~i~ 534 (723)
T KOG2437|consen 461 -----ELNLFFSYDIDSEHVDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEK-REENVRNSFWIYDIV 534 (723)
T ss_pred -----EEeehhcceeccccchhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhccC-ccccccCcEEEEEec
Confidence 355566675 22111111 111 211111111112335678887776543321 112256789999999
Q ss_pred CCceEEec------------------------cCCCceeeeeeEE--ECCEEEEEccccCCCCCCCchhhhhhccccccc
Q 013909 379 SLTWSVIG------------------------KLPYRIKTTLTGF--WDGWLYFTSGQRDRGPENPQPRKVIGEMWRTKL 432 (434)
Q Consensus 379 ~~~W~~~~------------------------~lp~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~w~~~~ 432 (434)
++.|..+- .+|.+|..|+.++ ...-+|.+||.. ..++-.+..+.|.|+.+|
T Consensus 535 ~~~w~cI~~I~~~~~d~dtvfsvpFp~ks~~~~~~~~rf~h~~~~dL~~~~~yl~Ggn~---~~~~~~~m~l~dfW~l~I 611 (723)
T KOG2437|consen 535 RNSWSCIYKIDQAAKDNDTVFSVPFPTKSLQEEEPCPRFAHQLVYDLLHKVHYLFGGNP---GKSCSPKMRLDDFWSLKI 611 (723)
T ss_pred ccchhhHhhhHHhhccCCceeeccCCcccccceeccccchhHHHHHHhhhhhhhhcCCC---CCCCCchhhhhhHHHHhh
Confidence 99998752 1345666665544 356788899954 467777889999999886
No 30
>PF13964 Kelch_6: Kelch motif
Probab=99.36 E-value=1.8e-12 Score=87.20 Aligned_cols=50 Identities=28% Similarity=0.530 Sum_probs=45.4
Q ss_pred CceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCc
Q 013909 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPR 219 (434)
Q Consensus 168 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r 219 (434)
+|.+|++++++++|||+||.... ...++++++||+++++|+.+++||.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~--~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS--GKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC--CCccccEEEEcCCCCcEEECCCCCCCC
Confidence 58899999999999999998774 345899999999999999999999987
No 31
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.31 E-value=8.3e-13 Score=124.40 Aligned_cols=185 Identities=16% Similarity=0.259 Sum_probs=136.0
Q ss_pred CCceEecCCC--------CCCCCceeeEEEEeCC--EEEEEeccCCCCCCCCCceeEEEECCCCceEecC---CCCCCcc
Q 013909 154 DNKWVDRFDM--------PKDMAHSHLGVVSDGR--YIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP---PLPSPRY 220 (434)
Q Consensus 154 t~~W~~~~~~--------~~~~~r~~~~~~~~~~--~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~---~~p~~r~ 220 (434)
+-.|+++++. ..|..|.+|.++...+ .||+.||+++... +.++|.|+...+.|+.+. ..|-.|.
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~---l~DFW~Y~v~e~~W~~iN~~t~~PG~Rs 314 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQD---LADFWAYSVKENQWTCINRDTEGPGARS 314 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchh---HHHHHhhcCCcceeEEeecCCCCCcchh
Confidence 3468877543 2355799999998765 9999999998654 799999999999999884 4788999
Q ss_pred cceEEEECC--EEEEEcCCCCCCC----CCCcceEEEEeeccccccCceEEcc------CCCCCCCceeEEEECCE--EE
Q 013909 221 SPATQLWRG--RLHVMGGSKENRH----TPGLEHWSIAVKDGKALEKAWRTEI------PIPRGGPHRACFVFNDR--LF 286 (434)
Q Consensus 221 ~~~~~~~~~--~iyv~GG~~~~~~----~~~~~~~~~~~~~~~~~~~~W~~~~------~~p~~~~~~~~~~~~~~--iy 286 (434)
.|.++.... |+|++|-+-+.+. ....+.|.++ ..++.|..+. --|...+.|.+++.+++ ||
T Consensus 315 CHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FD-----i~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iy 389 (723)
T KOG2437|consen 315 CHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFD-----IDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIY 389 (723)
T ss_pred hhhhhhhhhHhHHhhhhhccccccccccccccceEEEe-----cCCceeEEecccccccCCcceeecceeeEecCcceEE
Confidence 999997655 9999998744322 2334445443 6689998753 13666677899999888 99
Q ss_pred EEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCC----------CCCCCCccceeEEEECCEEEEEcC
Q 013909 287 VVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPP----------MPKPNSHIECAWVIVNNSIIITGG 355 (434)
Q Consensus 287 v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~----------~p~~r~~~~~~~~~~~~~i~v~GG 355 (434)
|+||..-.. .+-.+.-+|.|| ....|..+.. -...|-+|.+.++..+..+|+|||
T Consensus 390 VfGGr~~~~--------------~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fgg 455 (723)
T KOG2437|consen 390 VFGGRILTC--------------NEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGG 455 (723)
T ss_pred EecCeeccC--------------CCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccC
Confidence 999976431 122466799999 7779987742 123355666666677889999999
Q ss_pred cCCCC
Q 013909 356 TTEKH 360 (434)
Q Consensus 356 ~~~~~ 360 (434)
.....
T Consensus 456 q~s~~ 460 (723)
T KOG2437|consen 456 QRSKT 460 (723)
T ss_pred cccce
Confidence 87665
No 32
>PF13964 Kelch_6: Kelch motif
Probab=99.31 E-value=5.4e-12 Score=84.83 Aligned_cols=49 Identities=29% Similarity=0.540 Sum_probs=44.9
Q ss_pred CCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCC
Q 013909 118 PRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKD 166 (434)
Q Consensus 118 ~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~ 166 (434)
||.+|++++++++|||+||.......++++++||+++++|+++++||.|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTP 49 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCC
Confidence 6899999999999999999987556788999999999999999999873
No 33
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.15 E-value=6.1e-11 Score=78.59 Aligned_cols=47 Identities=34% Similarity=0.592 Sum_probs=43.0
Q ss_pred CCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCC
Q 013909 118 PRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP 164 (434)
Q Consensus 118 ~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~ 164 (434)
||.+|++++++++|||+||.......++++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 68999999999999999999986678899999999999999998875
No 34
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.09 E-value=1.2e-10 Score=77.25 Aligned_cols=47 Identities=36% Similarity=0.692 Sum_probs=41.9
Q ss_pred CceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCC
Q 013909 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP 216 (434)
Q Consensus 168 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p 216 (434)
||.+|++++++++|||+||.+.. ...++++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~--~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGN--NQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBEST--SSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeeccc--CceeeeEEEEeCCCCEEEEcCCCC
Confidence 58999999999999999999883 355899999999999999999886
No 35
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=99.06 E-value=3.8e-10 Score=75.31 Aligned_cols=49 Identities=24% Similarity=0.488 Sum_probs=42.7
Q ss_pred CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEE
Q 013909 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227 (434)
Q Consensus 178 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 227 (434)
+++||||||.+... ...++++|+||+.+++|++++++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~-~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDG-GTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCC-CCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 58999999998422 35579999999999999999999999999999863
No 36
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=99.04 E-value=6.8e-10 Score=74.10 Aligned_cols=49 Identities=20% Similarity=0.384 Sum_probs=41.4
Q ss_pred CceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCC
Q 013909 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP 216 (434)
Q Consensus 168 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p 216 (434)
+|.+|++++++++|||+||+.........+++++||+++++|+++++||
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 5889999999999999999922222355799999999999999999875
No 37
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=99.02 E-value=3.8e-10 Score=75.44 Aligned_cols=47 Identities=30% Similarity=0.544 Sum_probs=32.2
Q ss_pred CCCceeEEEE-CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCC
Q 013909 118 PRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP 164 (434)
Q Consensus 118 ~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~ 164 (434)
||.+|+++.+ +++|||+||.+.....++++|+||+++++|++++++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 6999999999 5899999999887678899999999999999997776
No 38
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=99.00 E-value=1.2e-09 Score=72.87 Aligned_cols=47 Identities=28% Similarity=0.515 Sum_probs=41.4
Q ss_pred CCCceeEEEECCEEEEEecc--CCCCCceeeEEEEECCCCceEecCCCC
Q 013909 118 PRLDGAAIQIKNLFYVFAGY--GSLDYVHSHVDVYNFTDNKWVDRFDMP 164 (434)
Q Consensus 118 ~R~~~~~~~~~~~iyv~GG~--~~~~~~~~~v~~yd~~t~~W~~~~~~~ 164 (434)
||.+|++++++++|||+||. .......+++++||+++++|+++++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 68999999999999999999 444457888999999999999998764
No 39
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.99 E-value=1.4e-09 Score=72.56 Aligned_cols=48 Identities=27% Similarity=0.398 Sum_probs=41.8
Q ss_pred CCEEEEEeccC-CCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe
Q 013909 128 KNLFYVFAGYG-SLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD 177 (434)
Q Consensus 128 ~~~iyv~GG~~-~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~ 177 (434)
+++|||+||.+ .....++++|+||+.+++|++++++|. +|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~--~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPP--PRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCC--CccceEEEEC
Confidence 57999999998 455678999999999999999988776 8999999864
No 40
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.92 E-value=1.3e-09 Score=72.82 Aligned_cols=48 Identities=27% Similarity=0.546 Sum_probs=31.1
Q ss_pred CceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCC
Q 013909 168 AHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPS 217 (434)
Q Consensus 168 ~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~ 217 (434)
||.+|+++.+ +++||||||.+... ..++++|+||+++++|+++++||.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~--~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSG--SPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-T--EE---EEEEETTTTEEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCC--cccCCEEEEECCCCEEEECCCCCC
Confidence 5889999988 58999999998763 358999999999999999988873
No 41
>smart00612 Kelch Kelch domain.
Probab=98.83 E-value=6.6e-09 Score=68.63 Aligned_cols=47 Identities=34% Similarity=0.624 Sum_probs=41.2
Q ss_pred EEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEECC
Q 013909 180 YIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRG 229 (434)
Q Consensus 180 ~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~ 229 (434)
+||++||.... ..++++++||+.+++|+.+++||.+|..|+++.+++
T Consensus 1 ~iyv~GG~~~~---~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG---QRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC---ceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 48999998653 347899999999999999999999999999988764
No 42
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.76 E-value=8.1e-07 Score=79.71 Aligned_cols=152 Identities=16% Similarity=0.242 Sum_probs=97.6
Q ss_pred eEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCC----CceEecC-CCCCCcc
Q 013909 146 HVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET----RKWDSIP-PLPSPRY 220 (434)
Q Consensus 146 ~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t----~~W~~~~-~~p~~r~ 220 (434)
....||+.+++++.+..... .-+...+..-|+++.++||.... ...+-.|+|.+ ..|.+.+ .|..+|.
T Consensus 47 ~s~~yD~~tn~~rpl~v~td--~FCSgg~~L~dG~ll~tGG~~~G-----~~~ir~~~p~~~~~~~~w~e~~~~m~~~RW 119 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTD--TFCSGGAFLPDGRLLQTGGDNDG-----NKAIRIFTPCTSDGTCDWTESPNDMQSGRW 119 (243)
T ss_pred EEEEEecCCCcEEeccCCCC--CcccCcCCCCCCCEEEeCCCCcc-----ccceEEEecCCCCCCCCceECcccccCCCc
Confidence 35679999999997754332 12223334458999999997542 35566788875 6798875 5899999
Q ss_pred cceEEEE-CCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEcc----CCCCCCCceeEEEECCEEEEEcCCCCCC
Q 013909 221 SPATQLW-RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEI----PIPRGGPHRACFVFNDRLFVVGGQEGDF 295 (434)
Q Consensus 221 ~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~----~~p~~~~~~~~~~~~~~iyv~GG~~~~~ 295 (434)
..+++.+ +++++|+||.... ..|.|.... ..+....|..+. ..+...+-+....-+|+||+++...
T Consensus 120 YpT~~~L~DG~vlIvGG~~~~----t~E~~P~~~--~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--- 190 (243)
T PF07250_consen 120 YPTATTLPDGRVLIVGGSNNP----TYEFWPPKG--PGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--- 190 (243)
T ss_pred cccceECCCCCEEEEeCcCCC----cccccCCcc--CCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC---
Confidence 9998866 7899999998732 222221000 001111222222 2344555556677799999999854
Q ss_pred CCCCCCCccccccccceeeCcEEEeC-CCCCe-EEcCCCCC
Q 013909 296 MAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKW-KVLPPMPK 334 (434)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W-~~~~~~p~ 334 (434)
-..|| .++++ +.++++|.
T Consensus 191 ---------------------s~i~d~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 191 ---------------------SIIYDYKTNTVVRTLPDLPG 210 (243)
T ss_pred ---------------------cEEEeCCCCeEEeeCCCCCC
Confidence 35667 66665 78888875
No 43
>smart00612 Kelch Kelch domain.
Probab=98.71 E-value=2.8e-08 Score=65.55 Aligned_cols=47 Identities=30% Similarity=0.426 Sum_probs=39.9
Q ss_pred EEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCC
Q 013909 130 LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGR 179 (434)
Q Consensus 130 ~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~ 179 (434)
+|||+||.... ...+++++||+.+++|+.+++|+. +|..|+++++++
T Consensus 1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~~~--~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLPSMPT--PRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-ceeeeEEEECCCCCeEccCCCCCC--ccccceEEEeCC
Confidence 48999998753 357789999999999999999987 788888888764
No 44
>PLN02772 guanylate kinase
Probab=98.70 E-value=1.2e-07 Score=90.10 Aligned_cols=86 Identities=16% Similarity=0.260 Sum_probs=68.8
Q ss_pred CCCCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCC-CCCCCceeeEEEEe-CCEEEEEeccCCCCCC
Q 013909 116 PVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDM-PKDMAHSHLGVVSD-GRYIYIVSGQYGPQCR 193 (434)
Q Consensus 116 p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~-~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~ 193 (434)
..||..++++.+++++||+||.+......+.+++||..|++|...+-+ ..|.+|.+|+++++ +++|+|+++....
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~--- 98 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP--- 98 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC---
Confidence 458889999999999999999877554678999999999999875432 23558999999988 6899999875443
Q ss_pred CCCceeEEEECCC
Q 013909 194 GPTSRTFVLDSET 206 (434)
Q Consensus 194 ~~~~~~~~yd~~t 206 (434)
-+++|.....|
T Consensus 99 --~~~~w~l~~~t 109 (398)
T PLN02772 99 --DDSIWFLEVDT 109 (398)
T ss_pred --ccceEEEEcCC
Confidence 26788777665
No 45
>PF13854 Kelch_5: Kelch motif
Probab=98.66 E-value=6.5e-08 Score=61.96 Aligned_cols=41 Identities=24% Similarity=0.494 Sum_probs=36.6
Q ss_pred CCCCCCceeEEEECCEEEEEeccCC-CCCceeeEEEEECCCC
Q 013909 115 APVPRLDGAAIQIKNLFYVFAGYGS-LDYVHSHVDVYNFTDN 155 (434)
Q Consensus 115 ~p~~R~~~~~~~~~~~iyv~GG~~~-~~~~~~~v~~yd~~t~ 155 (434)
+|.+|.+|+++.++++|||+||... ....++++|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4889999999999999999999984 6668899999999863
No 46
>PF13854 Kelch_5: Kelch motif
Probab=98.50 E-value=2.8e-07 Score=58.99 Aligned_cols=41 Identities=24% Similarity=0.288 Sum_probs=34.0
Q ss_pred CCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCC
Q 013909 166 DMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (434)
Q Consensus 166 ~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~ 207 (434)
|.+|.+|++++++++|||+||.+. ......+++|+||+.+.
T Consensus 2 P~~R~~hs~~~~~~~iyi~GG~~~-~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 2 PSPRYGHSAVVVGNNIYIFGGYSG-NNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCccceEEEEECCEEEEEcCccC-CCCCEECcEEEEECCCC
Confidence 448999999999999999999985 22355799999998763
No 47
>PLN02772 guanylate kinase
Probab=98.45 E-value=1.3e-06 Score=83.26 Aligned_cols=79 Identities=18% Similarity=0.255 Sum_probs=64.4
Q ss_pred CceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEec---CCCCCCcccceEEEE-CCEEEEEcCCCCCCCC
Q 013909 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSI---PPLPSPRYSPATQLW-RGRLHVMGGSKENRHT 243 (434)
Q Consensus 168 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~---~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~ 243 (434)
++..++++.+++++||+||.+... ...+.+++||+.|++|... .+.|.||.+|+++++ +++|+|+++....
T Consensus 24 ~~~~~tav~igdk~yv~GG~~d~~--~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~--- 98 (398)
T PLN02772 24 PKNRETSVTIGDKTYVIGGNHEGN--TLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP--- 98 (398)
T ss_pred CCCcceeEEECCEEEEEcccCCCc--cccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC---
Confidence 688899999999999999976643 2368999999999999876 478999999999988 6899999876532
Q ss_pred CCcceEEEE
Q 013909 244 PGLEHWSIA 252 (434)
Q Consensus 244 ~~~~~~~~~ 252 (434)
....|-++
T Consensus 99 -~~~~w~l~ 106 (398)
T PLN02772 99 -DDSIWFLE 106 (398)
T ss_pred -ccceEEEE
Confidence 24566665
No 48
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.33 E-value=0.0002 Score=64.08 Aligned_cols=161 Identities=12% Similarity=0.119 Sum_probs=99.4
Q ss_pred EEEEEeccCCCCCceeeEEEEECCCCce-----------EecCCCCCCCCceeeEEEEeC----CEEEEEeccCCCC---
Q 013909 130 LFYVFAGYGSLDYVHSHVDVYNFTDNKW-----------VDRFDMPKDMAHSHLGVVSDG----RYIYIVSGQYGPQ--- 191 (434)
Q Consensus 130 ~iyv~GG~~~~~~~~~~v~~yd~~t~~W-----------~~~~~~~~~~~r~~~~~~~~~----~~lyv~GG~~~~~--- 191 (434)
..+|.||...++..++++++....+..- +.+.++|. +|++|++.++. ....+|||...-.
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~--aRYGHt~~vV~SrGKta~VlFGGRSY~P~~q 117 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPE--ARYGHTINVVHSRGKTACVLFGGRSYMPPGQ 117 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCc--ccccceEEEEEECCcEEEEEECCcccCCccc
Confidence 4677888988888888899987765431 12345555 89999997762 2477899963210
Q ss_pred --------CCCCCceeEEEECCCCceE--ecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccC
Q 013909 192 --------CRGPTSRTFVLDSETRKWD--SIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEK 261 (434)
Q Consensus 192 --------~~~~~~~~~~yd~~t~~W~--~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (434)
-.+....|+..|++-.-.+ .++.+....+.|.+..-++.+|++||..-.........|.+.+.- +...
T Consensus 118 RTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdL--llGS 195 (337)
T PF03089_consen 118 RTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDL--LLGS 195 (337)
T ss_pred cchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEee--cCCC
Confidence 1123357788888876654 346677788899999999999999998654444444455543211 1111
Q ss_pred ceEEccCCCCCCCceeEEE---ECCEEEEEcCCCCC
Q 013909 262 AWRTEIPIPRGGPHRACFV---FNDRLFVVGGQEGD 294 (434)
Q Consensus 262 ~W~~~~~~p~~~~~~~~~~---~~~~iyv~GG~~~~ 294 (434)
-.-...-++.+..-.++.+ -.++..|+||+..+
T Consensus 196 P~vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~sd 231 (337)
T PF03089_consen 196 PAVSCTVLQGGLSISSAIVTQTGPHEYIILGGYQSD 231 (337)
T ss_pred ceeEEEECCCCceEeeeeEeecCCCceEEEeccccc
Confidence 1111112333222112222 15788999998765
No 49
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.30 E-value=2.6e-05 Score=70.11 Aligned_cols=155 Identities=14% Similarity=0.207 Sum_probs=93.6
Q ss_pred ceeEEEECCCCceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEcc-CCCCCCCc
Q 013909 197 SRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEI-PIPRGGPH 275 (434)
Q Consensus 197 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~-~~p~~~~~ 275 (434)
..-..||+.+++++.+.-....-+...+..-+|++++.||.... ...+..|+.. . +..+..|.+.. .|..+|..
T Consensus 46 a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G--~~~ir~~~p~--~-~~~~~~w~e~~~~m~~~RWY 120 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDG--NKAIRIFTPC--T-SDGTCDWTESPNDMQSGRWY 120 (243)
T ss_pred EEEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCcc--ccceEEEecC--C-CCCCCCceECcccccCCCcc
Confidence 33468999999999876443332222334558999999998652 3344555521 0 11246798865 46666655
Q ss_pred eeEEE-ECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeCC-C-----CCeEEcCCC--CCCCCccceeEEEE
Q 013909 276 RACFV-FNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDD-E-----MKWKVLPPM--PKPNSHIECAWVIV 346 (434)
Q Consensus 276 ~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~-~-----~~W~~~~~~--p~~r~~~~~~~~~~ 346 (434)
.++.. -+|+++|+||..... .+.+.+ . ..|..+... ..+....-...+.-
T Consensus 121 pT~~~L~DG~vlIvGG~~~~t---------------------~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llP 179 (243)
T PF07250_consen 121 PTATTLPDGRVLIVGGSNNPT---------------------YEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLP 179 (243)
T ss_pred ccceECCCCCEEEEeCcCCCc---------------------ccccCCccCCCCceeeecchhhhccCccccCceEEEcC
Confidence 55554 499999999987331 222222 1 123333211 11222222333777
Q ss_pred CCEEEEEcCcCCCCCCccceeeeccEEEEECCCCce-EEeccCCCc
Q 013909 347 NNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTW-SVIGKLPYR 391 (434)
Q Consensus 347 ~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W-~~~~~lp~~ 391 (434)
+|+||+++.. +..+||++++++ +.++.+|..
T Consensus 180 dG~lFi~an~--------------~s~i~d~~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 180 DGNLFIFANR--------------GSIIYDYKTNTVVRTLPDLPGG 211 (243)
T ss_pred CCCEEEEEcC--------------CcEEEeCCCCeEEeeCCCCCCC
Confidence 9999999984 356889999987 778888864
No 50
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.29 E-value=0.00018 Score=65.25 Aligned_cols=197 Identities=14% Similarity=0.145 Sum_probs=110.4
Q ss_pred eEEEEECCCCceEecCCCCCCC---CceeeEEEEe---CC-EEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCC
Q 013909 146 HVDVYNFTDNKWVDRFDMPKDM---AHSHLGVVSD---GR-YIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSP 218 (434)
Q Consensus 146 ~v~~yd~~t~~W~~~~~~~~~~---~r~~~~~~~~---~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~ 218 (434)
.+.++||.|++|..+|+.+.+. .+...+.... +. |+..+...... .....+++|+..++.|+.+...+..
T Consensus 15 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~---~~~~~~~Vys~~~~~Wr~~~~~~~~ 91 (230)
T TIGR01640 15 RLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN---RNQSEHQVYTLGSNSWRTIECSPPH 91 (230)
T ss_pred cEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC---CCCccEEEEEeCCCCccccccCCCC
Confidence 4899999999999997654321 1111111111 11 45544332111 1235789999999999998743322
Q ss_pred -cccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCC----CceeEEEECCEEEEEcCCCC
Q 013909 219 -RYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGG----PHRACFVFNDRLFVVGGQEG 293 (434)
Q Consensus 219 -r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~----~~~~~~~~~~~iyv~GG~~~ 293 (434)
......+.++|.||-+.-.........+-.|| ..+++|++..++|... .....+.++|++.++.....
T Consensus 92 ~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFD-------l~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~ 164 (230)
T TIGR01640 92 HPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFD-------VSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKD 164 (230)
T ss_pred ccccCCeEEECCEEEEEEEECCCCCcEEEEEEE-------cccceEeeeeecCccccccccceEEEEECCEEEEEEecCC
Confidence 11222678899999886432211001222333 5688998633444332 13456777899988876432
Q ss_pred CCCCCCCCCccccccccceeeCcEEEeC--CCCCeEEcCCCC---CCCCc--cceeEEEECCEEEEEcCcCCCCCCccce
Q 013909 294 DFMAKPGSPIFKCSRRHEVVYGDVYMLD--DEMKWKVLPPMP---KPNSH--IECAWVIVNNSIIITGGTTEKHPMTKRM 366 (434)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~v~~yd--~~~~W~~~~~~p---~~r~~--~~~~~~~~~~~i~v~GG~~~~~~~~~~~ 366 (434)
.. .-++|..+ ...+|+++-.++ .+... .....+..+++|++.-.. ...
T Consensus 165 ~~------------------~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~-~~~------ 219 (230)
T TIGR01640 165 TN------------------NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED-ENP------ 219 (230)
T ss_pred CC------------------cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC-CCc------
Confidence 11 13688886 355798864332 11111 112236678888887753 111
Q ss_pred eeeccEEEEECCCC
Q 013909 367 ILVGEVFQFHLDSL 380 (434)
Q Consensus 367 ~~~~~v~~yd~~~~ 380 (434)
.-+..||++++
T Consensus 220 ---~~~~~y~~~~~ 230 (230)
T TIGR01640 220 ---FYIFYYNVGEN 230 (230)
T ss_pred ---eEEEEEeccCC
Confidence 13889999875
No 51
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.27 E-value=0.00027 Score=64.06 Aligned_cols=182 Identities=14% Similarity=0.220 Sum_probs=108.9
Q ss_pred ceeeccCCCCcEEEcCCCCCCCC---c-eeEEEECC-----EEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCC
Q 013909 98 TFADLPAPDLEWEQMPSAPVPRL---D-GAAIQIKN-----LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMA 168 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R~---~-~~~~~~~~-----~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~ 168 (434)
.+..+||.+++|..+|+.+.++. . .....++. ||..+....... ....+++|+..+++|+.+...+....
T Consensus 15 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~-~~~~~~Vys~~~~~Wr~~~~~~~~~~ 93 (230)
T TIGR01640 15 RLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR-NQSEHQVYTLGSNSWRTIECSPPHHP 93 (230)
T ss_pred cEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC-CCccEEEEEeCCCCccccccCCCCcc
Confidence 78899999999999987554321 1 11112221 566654432111 22458999999999999874332211
Q ss_pred ceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCc----ccceEEEECCEEEEEcCCCCCCCCC
Q 013909 169 HSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPR----YSPATQLWRGRLHVMGGSKENRHTP 244 (434)
Q Consensus 169 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r----~~~~~~~~~~~iyv~GG~~~~~~~~ 244 (434)
... ..+.++|.||-+.-..... ....+..||..+.+|...-++|..+ ....++.++++|.++..... ..
T Consensus 94 ~~~-~~v~~~G~lyw~~~~~~~~---~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~---~~ 166 (230)
T TIGR01640 94 LKS-RGVCINGVLYYLAYTLKTN---PDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKD---TN 166 (230)
T ss_pred ccC-CeEEECCEEEEEEEECCCC---CcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecCC---CC
Confidence 122 2667899999887432211 1136899999999999522344332 23456788899988865432 13
Q ss_pred CcceEEEEeeccccccCceEEccCCC-----CCC--CceeEEEECCEEEEEcCC
Q 013909 245 GLEHWSIAVKDGKALEKAWRTEIPIP-----RGG--PHRACFVFNDRLFVVGGQ 291 (434)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~W~~~~~~p-----~~~--~~~~~~~~~~~iyv~GG~ 291 (434)
..++|.++ +++ ...|++.-.++ ... .....+..+++|++.-..
T Consensus 167 ~~~IWvl~--d~~--~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~ 216 (230)
T TIGR01640 167 NFDLWVLN--DAG--KQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED 216 (230)
T ss_pred cEEEEEEC--CCC--CCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC
Confidence 47788764 222 44698843322 111 123456678998887753
No 52
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.21 E-value=0.00096 Score=65.70 Aligned_cols=235 Identities=14% Similarity=0.146 Sum_probs=127.7
Q ss_pred cceeeccCCCC--cEEEcCCCCCCCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCc--eEecCCCCCCCCceee
Q 013909 97 ATFADLPAPDL--EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSHL 172 (434)
Q Consensus 97 ~~~~~~~~~~~--~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~r~~~ 172 (434)
..++.+|..++ .|+.-.. .+ ...+.++.++.+|+..+. ..++.+|+++.+ |+.-...+....+...
T Consensus 130 g~l~ald~~tG~~~W~~~~~--~~-~~ssP~v~~~~v~v~~~~-------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~ 199 (394)
T PRK11138 130 GQVYALNAEDGEVAWQTKVA--GE-ALSRPVVSDGLVLVHTSN-------GMLQALNESDGAVKWTVNLDVPSLTLRGES 199 (394)
T ss_pred CEEEEEECCCCCCcccccCC--Cc-eecCCEEECCEEEEECCC-------CEEEEEEccCCCEeeeecCCCCcccccCCC
Confidence 36788887665 7865322 11 122234558888875431 248999999886 8764332211112222
Q ss_pred EEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCc--eEecCCCCCC--------cccceEEEECCEEEEEcCCCCCCC
Q 013909 173 GVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK--WDSIPPLPSP--------RYSPATQLWRGRLHVMGGSKENRH 242 (434)
Q Consensus 173 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~--------r~~~~~~~~~~~iyv~GG~~~~~~ 242 (434)
+-++.++.+|+..+ ...+..+|+++.+ |+.-...|.. ....+-++.++.+|+.+..
T Consensus 200 sP~v~~~~v~~~~~---------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~----- 265 (394)
T PRK11138 200 APATAFGGAIVGGD---------NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYN----- 265 (394)
T ss_pred CCEEECCEEEEEcC---------CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcC-----
Confidence 33456777776433 2457788888764 8653222211 1123344678899986531
Q ss_pred CCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-
Q 013909 243 TPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD- 321 (434)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd- 321 (434)
..+.+++.. .....|+.....+ ...+..+++||+.... + .++++|
T Consensus 266 -g~l~ald~~-----tG~~~W~~~~~~~-----~~~~~~~~~vy~~~~~-g----------------------~l~ald~ 311 (394)
T PRK11138 266 -GNLVALDLR-----SGQIVWKREYGSV-----NDFAVDGGRIYLVDQN-D----------------------RVYALDT 311 (394)
T ss_pred -CeEEEEECC-----CCCEEEeecCCCc-----cCcEEECCEEEEEcCC-C----------------------eEEEEEC
Confidence 123333321 2334687632211 1345678999987532 1 488888
Q ss_pred CCC--CeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCc--eEEeccCCCceeeeee
Q 013909 322 DEM--KWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLT--WSVIGKLPYRIKTTLT 397 (434)
Q Consensus 322 ~~~--~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~~~lp~~r~~~~~ 397 (434)
.+. .|+.-. + ..+.. .+.++.+++||+... + ..++.+|+++.+ |+. .++......+.
T Consensus 312 ~tG~~~W~~~~-~-~~~~~--~sp~v~~g~l~v~~~-~------------G~l~~ld~~tG~~~~~~--~~~~~~~~s~P 372 (394)
T PRK11138 312 RGGVELWSQSD-L-LHRLL--TAPVLYNGYLVVGDS-E------------GYLHWINREDGRFVAQQ--KVDSSGFLSEP 372 (394)
T ss_pred CCCcEEEcccc-c-CCCcc--cCCEEECCEEEEEeC-C------------CEEEEEECCCCCEEEEE--EcCCCcceeCC
Confidence 433 686521 1 11221 233677899887532 1 257888988876 443 22222334455
Q ss_pred EEECCEEEEEc
Q 013909 398 GFWDGWLYFTS 408 (434)
Q Consensus 398 ~~~~~~l~v~G 408 (434)
++.+++|||-.
T Consensus 373 ~~~~~~l~v~t 383 (394)
T PRK11138 373 VVADDKLLIQA 383 (394)
T ss_pred EEECCEEEEEe
Confidence 56788888763
No 53
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.98 E-value=0.0098 Score=58.14 Aligned_cols=238 Identities=14% Similarity=0.144 Sum_probs=124.3
Q ss_pred cceeeccCCCC--cEEEcCCCCCCCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCc--eEecCCCCCCCCceee
Q 013909 97 ATFADLPAPDL--EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSHL 172 (434)
Q Consensus 97 ~~~~~~~~~~~--~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~r~~~ 172 (434)
..++.+|..++ .|+.-.. .. ...+.+..++++|+..+ ...++++|+++.+ |+.-...+....+...
T Consensus 115 g~l~ald~~tG~~~W~~~~~--~~-~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~ 184 (377)
T TIGR03300 115 GEVIALDAEDGKELWRAKLS--SE-VLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVTPALTLRGSA 184 (377)
T ss_pred CEEEEEECCCCcEeeeeccC--ce-eecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCCCceeecCCC
Confidence 46788887665 5765322 11 12233445778877543 1248999998775 8754322210012223
Q ss_pred EEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCC--ceEecCCCCCCc--------ccceEEEECCEEEEEcCCCCCCC
Q 013909 173 GVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR--KWDSIPPLPSPR--------YSPATQLWRGRLHVMGGSKENRH 242 (434)
Q Consensus 173 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~--~W~~~~~~p~~r--------~~~~~~~~~~~iyv~GG~~~~~~ 242 (434)
+.++.++.+|+ |.. ...+..+|+++. .|+.-...+... ...+.+..++.+|+....
T Consensus 185 sp~~~~~~v~~-~~~--------~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~----- 250 (377)
T TIGR03300 185 SPVIADGGVLV-GFA--------GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ----- 250 (377)
T ss_pred CCEEECCEEEE-ECC--------CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC-----
Confidence 34556676654 331 136888998776 486432222111 122334567888886432
Q ss_pred CCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-
Q 013909 243 TPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD- 321 (434)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd- 321 (434)
..+.+++.. .....|+.... . ....++.++++|+... ++ .++++|
T Consensus 251 -g~l~a~d~~-----tG~~~W~~~~~--~---~~~p~~~~~~vyv~~~-~G----------------------~l~~~d~ 296 (377)
T TIGR03300 251 -GRVAALDLR-----SGRVLWKRDAS--S---YQGPAVDDNRLYVTDA-DG----------------------VVVALDR 296 (377)
T ss_pred -CEEEEEECC-----CCcEEEeeccC--C---ccCceEeCCEEEEECC-CC----------------------eEEEEEC
Confidence 123444422 33455866421 1 1144567899998753 11 488888
Q ss_pred CCC--CeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccCCCceeeeeeEE
Q 013909 322 DEM--KWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKLPYRIKTTLTGF 399 (434)
Q Consensus 322 ~~~--~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~ 399 (434)
.+. .|+.-. +.. +.. .+.++.++.||+.. .+ ..++.+|+++.+-.---+++......+.++
T Consensus 297 ~tG~~~W~~~~-~~~-~~~--ssp~i~g~~l~~~~-~~------------G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~ 359 (377)
T TIGR03300 297 RSGSELWKNDE-LKY-RQL--TAPAVVGGYLVVGD-FE------------GYLHWLSREDGSFVARLKTDGSGIASPPVV 359 (377)
T ss_pred CCCcEEEcccc-ccC-Ccc--ccCEEECCEEEEEe-CC------------CEEEEEECCCCCEEEEEEcCCCccccCCEE
Confidence 433 686521 211 111 12256778877743 22 258888987765221112333234455567
Q ss_pred ECCEEEEEcc
Q 013909 400 WDGWLYFTSG 409 (434)
Q Consensus 400 ~~~~l~v~GG 409 (434)
.+++||+.+.
T Consensus 360 ~~~~l~v~~~ 369 (377)
T TIGR03300 360 VGDGLLVQTR 369 (377)
T ss_pred ECCEEEEEeC
Confidence 7888776654
No 54
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.74 E-value=0.00028 Score=63.17 Aligned_cols=98 Identities=13% Similarity=0.143 Sum_probs=73.5
Q ss_pred cCCCCCCCCccceeEEEECCE--EEEEcCcCCCCC---Cccceee----eccEEEEECCCCceEE--eccCCCceeeeee
Q 013909 329 LPPMPKPNSHIECAWVIVNNS--IIITGGTTEKHP---MTKRMIL----VGEVFQFHLDSLTWSV--IGKLPYRIKTTLT 397 (434)
Q Consensus 329 ~~~~p~~r~~~~~~~~~~~~~--i~v~GG~~~~~~---~~~~~~~----~~~v~~yd~~~~~W~~--~~~lp~~r~~~~~ 397 (434)
+.++|.+|++|...++...|| .++|||....-. .++.++- ...|+..|++-+-.+. ++++....++|.+
T Consensus 81 vGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvs 160 (337)
T PF03089_consen 81 VGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVS 160 (337)
T ss_pred cCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEE
Confidence 468999999999887777765 788999765322 1111111 1247888888877765 5778888899999
Q ss_pred EEECCEEEEEccccC-CCCCCCchhhhhhc
Q 013909 398 GFWDGWLYFTSGQRD-RGPENPQPRKVIGE 426 (434)
Q Consensus 398 ~~~~~~l~v~GG~~~-~~~~~~~~~~~~~~ 426 (434)
.+-++.||++||..- ...|.|.++++-.|
T Consensus 161 lar~D~VYilGGHsl~sd~Rpp~l~rlkVd 190 (337)
T PF03089_consen 161 LARNDCVYILGGHSLESDSRPPRLYRLKVD 190 (337)
T ss_pred EecCceEEEEccEEccCCCCCCcEEEEEEe
Confidence 999999999999885 45899999887665
No 55
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.65 E-value=0.074 Score=52.35 Aligned_cols=234 Identities=17% Similarity=0.239 Sum_probs=127.7
Q ss_pred ceeeccCCCC--cEEEcCCCC--------CCCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCc--eEecCCCCC
Q 013909 98 TFADLPAPDL--EWEQMPSAP--------VPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPK 165 (434)
Q Consensus 98 ~~~~~~~~~~--~W~~~~~~p--------~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~ 165 (434)
.++.+|..++ .|+.-..-. .++...+.+..+++||+.+. + ..++++|.+|.+ |+.-. +.
T Consensus 80 ~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~-~------g~l~ald~~tG~~~W~~~~--~~ 150 (394)
T PRK11138 80 LVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE-K------GQVYALNAEDGEVAWQTKV--AG 150 (394)
T ss_pred eEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC-C------CEEEEEECCCCCCcccccC--CC
Confidence 5777787654 686532210 11223345667889987432 1 248999998875 87532 22
Q ss_pred CCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCc--eEecCCCCC--CcccceEEEECCEEEEEcCCCCCC
Q 013909 166 DMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK--WDSIPPLPS--PRYSPATQLWRGRLHVMGGSKENR 241 (434)
Q Consensus 166 ~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~ 241 (434)
+ ...+-++.++.+|+..+ ...++.+|+++.+ |+.-...|. .+...+-+..++.+|+..+..
T Consensus 151 ~---~~ssP~v~~~~v~v~~~---------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g--- 215 (394)
T PRK11138 151 E---ALSRPVVSDGLVLVHTS---------NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNG--- 215 (394)
T ss_pred c---eecCCEEECCEEEEECC---------CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCC---
Confidence 1 12233566888887533 2468999998776 876544332 122233445577777754321
Q ss_pred CCCCcceEEEEeeccccccCceEEccCCCCCC--------CceeEEEECCEEEEEcCCCCCCCCCCCCCcccccccccee
Q 013909 242 HTPGLEHWSIAVKDGKALEKAWRTEIPIPRGG--------PHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVV 313 (434)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~ 313 (434)
.+..++.. .....|+.....|... ...+-++.++.+|+.+. ++
T Consensus 216 ---~v~a~d~~-----~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~-~g-------------------- 266 (394)
T PRK11138 216 ---RVSAVLME-----QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY-NG-------------------- 266 (394)
T ss_pred ---EEEEEEcc-----CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc-CC--------------------
Confidence 12223321 3344676532222110 11244567899998653 22
Q ss_pred eCcEEEeC-CCC--CeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCc--eEEeccC
Q 013909 314 YGDVYMLD-DEM--KWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLT--WSVIGKL 388 (434)
Q Consensus 314 ~~~v~~yd-~~~--~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~~~l 388 (434)
.++++| .+. .|+.- ...+. ..++.+++||+.... ..++.+|+++.+ |+.- .+
T Consensus 267 --~l~ald~~tG~~~W~~~--~~~~~-----~~~~~~~~vy~~~~~-------------g~l~ald~~tG~~~W~~~-~~ 323 (394)
T PRK11138 267 --NLVALDLRSGQIVWKRE--YGSVN-----DFAVDGGRIYLVDQN-------------DRVYALDTRGGVELWSQS-DL 323 (394)
T ss_pred --eEEEEECCCCCEEEeec--CCCcc-----CcEEECCEEEEEcCC-------------CeEEEEECCCCcEEEccc-cc
Confidence 388998 433 68763 22111 236778999987532 268889988764 7542 11
Q ss_pred CCceeeeeeEEECCEEEEEc
Q 013909 389 PYRIKTTLTGFWDGWLYFTS 408 (434)
Q Consensus 389 p~~r~~~~~~~~~~~l~v~G 408 (434)
..+...+.++.++.||+..
T Consensus 324 -~~~~~~sp~v~~g~l~v~~ 342 (394)
T PRK11138 324 -LHRLLTAPVLYNGYLVVGD 342 (394)
T ss_pred -CCCcccCCEEECCEEEEEe
Confidence 1222334445677776653
No 56
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.60 E-value=0.0085 Score=57.57 Aligned_cols=130 Identities=24% Similarity=0.313 Sum_probs=81.5
Q ss_pred EEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCC--cceEEEE
Q 013909 175 VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPG--LEHWSIA 252 (434)
Q Consensus 175 ~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~--~~~~~~~ 252 (434)
++.+++|+.++.. ....+||+++..-...|.|+.+.....++.++++||++........... ...|...
T Consensus 73 al~gskIv~~d~~---------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l 143 (342)
T PF07893_consen 73 ALHGSKIVAVDQS---------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEAL 143 (342)
T ss_pred EecCCeEEEEcCC---------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEe
Confidence 4458899988552 3478899999998888888888777788888999999987643321111 0123222
Q ss_pred eec------cccccCceEEccCCCCCCC-------ceeEEEE-CCEEEE-EcCCCCCCCCCCCCCccccccccceeeCcE
Q 013909 253 VKD------GKALEKAWRTEIPIPRGGP-------HRACFVF-NDRLFV-VGGQEGDFMAKPGSPIFKCSRRHEVVYGDV 317 (434)
Q Consensus 253 ~~~------~~~~~~~W~~~~~~p~~~~-------~~~~~~~-~~~iyv-~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v 317 (434)
.++ .....-.|+.+++.|-... -.+.+++ +..|+| .-+... -.
T Consensus 144 ~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~----------------------GT 201 (342)
T PF07893_consen 144 VYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRW----------------------GT 201 (342)
T ss_pred ccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCce----------------------EE
Confidence 222 1123346777776552221 1244555 778888 443211 27
Q ss_pred EEeC-CCCCeEEcCCCCCC
Q 013909 318 YMLD-DEMKWKVLPPMPKP 335 (434)
Q Consensus 318 ~~yd-~~~~W~~~~~~p~~ 335 (434)
|+|| .+.+|+++.+-..|
T Consensus 202 ysfDt~~~~W~~~GdW~LP 220 (342)
T PF07893_consen 202 YSFDTESHEWRKHGDWMLP 220 (342)
T ss_pred EEEEcCCcceeeccceecC
Confidence 9999 77899999853333
No 57
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.20 E-value=0.16 Score=45.81 Aligned_cols=208 Identities=20% Similarity=0.295 Sum_probs=115.2
Q ss_pred ceeeccCCCC--cEEEcCCCCCCCCcee--EEEECCEEEEEeccCCCCCceeeEEEEECCCCc--eEecCCCCCCCCcee
Q 013909 98 TFADLPAPDL--EWEQMPSAPVPRLDGA--AIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSH 171 (434)
Q Consensus 98 ~~~~~~~~~~--~W~~~~~~p~~R~~~~--~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~r~~ 171 (434)
.+..+|+.++ .|+.- +..+..+.. .+..++.+|+..+ ...++++|+.+.+ |+.-. +.+ ..
T Consensus 4 ~l~~~d~~tG~~~W~~~--~~~~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~~W~~~~--~~~---~~ 69 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYD--LGPGIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKVLWRFDL--PGP---IS 69 (238)
T ss_dssp EEEEEETTTTEEEEEEE--CSSSCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEEEEEEEC--SSC---GG
T ss_pred EEEEEECCCCCEEEEEE--CCCCCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCEEEEeec--ccc---cc
Confidence 5666777665 67652 222233333 3446889999842 2359999998886 76543 321 11
Q ss_pred eEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCc--eE-ecCCCCC--CcccceEEEECCEEEEEcCCCCCCCCCCc
Q 013909 172 LGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK--WD-SIPPLPS--PRYSPATQLWRGRLHVMGGSKENRHTPGL 246 (434)
Q Consensus 172 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~--W~-~~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 246 (434)
...++.++.+|+... ...++.+|..+.+ |+ .....+. .+........++.+|+.... ..+
T Consensus 70 ~~~~~~~~~v~v~~~---------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~l 134 (238)
T PF13360_consen 70 GAPVVDGGRVYVGTS---------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS------GKL 134 (238)
T ss_dssp SGEEEETTEEEEEET---------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC------SEE
T ss_pred ceeeecccccccccc---------eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEecc------CcE
Confidence 124778899998763 2478999987765 98 4433232 23444455567777777531 122
Q ss_pred ceEEEEeeccccccCceEEccCCCCCCC--------ceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEE
Q 013909 247 EHWSIAVKDGKALEKAWRTEIPIPRGGP--------HRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVY 318 (434)
Q Consensus 247 ~~~~~~~~~~~~~~~~W~~~~~~p~~~~--------~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 318 (434)
..++. +.....|+.....++... ....+..++.+|+..+.. .+.
T Consensus 135 ~~~d~-----~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g-----------------------~~~ 186 (238)
T PF13360_consen 135 VALDP-----KTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG-----------------------RVV 186 (238)
T ss_dssp EEEET-----TTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS-----------------------SEE
T ss_pred EEEec-----CCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC-----------------------eEE
Confidence 33331 123445776545444221 123334468888877643 145
Q ss_pred EeC-CCC--CeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCc
Q 013909 319 MLD-DEM--KWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLT 381 (434)
Q Consensus 319 ~yd-~~~--~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~ 381 (434)
.+| .+. .|+.. +.. ........++.||+.. .+ ..++.+|+++++
T Consensus 187 ~~d~~tg~~~w~~~--~~~----~~~~~~~~~~~l~~~~-~~------------~~l~~~d~~tG~ 233 (238)
T PF13360_consen 187 AVDLATGEKLWSKP--ISG----IYSLPSVDGGTLYVTS-SD------------GRLYALDLKTGK 233 (238)
T ss_dssp EEETTTTEEEEEEC--SS-----ECECEECCCTEEEEEE-TT------------TEEEEEETTTTE
T ss_pred EEECCCCCEEEEec--CCC----ccCCceeeCCEEEEEe-CC------------CEEEEEECCCCC
Confidence 567 554 48443 221 1112356677777766 22 269999999876
No 58
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.14 E-value=0.28 Score=47.90 Aligned_cols=211 Identities=18% Similarity=0.226 Sum_probs=110.2
Q ss_pred eeEEEECCEEEEEeccCCCCCceeeEEEEECCCCc--eEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCcee
Q 013909 122 GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRT 199 (434)
Q Consensus 122 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~ 199 (434)
.+.++.++++|+.+.. ..+++||+.+++ |+.- ++. +...+.++.++.+|+... ...+
T Consensus 59 ~~p~v~~~~v~v~~~~-------g~v~a~d~~tG~~~W~~~--~~~---~~~~~p~v~~~~v~v~~~---------~g~l 117 (377)
T TIGR03300 59 LQPAVAGGKVYAADAD-------GTVVALDAETGKRLWRVD--LDE---RLSGGVGADGGLVFVGTE---------KGEV 117 (377)
T ss_pred cceEEECCEEEEECCC-------CeEEEEEccCCcEeeeec--CCC---CcccceEEcCCEEEEEcC---------CCEE
Confidence 3445668888886532 249999998775 8753 222 112234556788886432 2478
Q ss_pred EEEECCCCc--eEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCC--CCCc
Q 013909 200 FVLDSETRK--WDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPR--GGPH 275 (434)
Q Consensus 200 ~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~--~~~~ 275 (434)
+.+|+++.+ |+.-.+ .. ...+.+..++++|+..+. ..+..++.. .....|+.....+. ....
T Consensus 118 ~ald~~tG~~~W~~~~~--~~-~~~~p~v~~~~v~v~~~~------g~l~a~d~~-----tG~~~W~~~~~~~~~~~~~~ 183 (377)
T TIGR03300 118 IALDAEDGKELWRAKLS--SE-VLSPPLVANGLVVVRTND------GRLTALDAA-----TGERLWTYSRVTPALTLRGS 183 (377)
T ss_pred EEEECCCCcEeeeeccC--ce-eecCCEEECCEEEEECCC------CeEEEEEcC-----CCceeeEEccCCCceeecCC
Confidence 999987764 875422 11 112234567788775431 223344421 23446876433221 1111
Q ss_pred eeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCC--CeEEcCCCCCCCC------ccceeEEEE
Q 013909 276 RACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEM--KWKVLPPMPKPNS------HIECAWVIV 346 (434)
Q Consensus 276 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~--~W~~~~~~p~~r~------~~~~~~~~~ 346 (434)
.+.+..++.+| +|..++ .++.+| .+. .|+.-...+.... ....+.++.
T Consensus 184 ~sp~~~~~~v~-~~~~~g----------------------~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~ 240 (377)
T TIGR03300 184 ASPVIADGGVL-VGFAGG----------------------KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD 240 (377)
T ss_pred CCCEEECCEEE-EECCCC----------------------EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE
Confidence 23455566554 444322 378888 333 6865322221110 111233566
Q ss_pred CCEEEEEcCcCCCCCCccceeeeccEEEEECCCCc--eEEeccCCCceeeeeeEEECCEEEEEc
Q 013909 347 NNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLT--WSVIGKLPYRIKTTLTGFWDGWLYFTS 408 (434)
Q Consensus 347 ~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~~~lp~~r~~~~~~~~~~~l~v~G 408 (434)
++.+|+.... ..++.||+++.+ |+.- .+ .....+..+++||+..
T Consensus 241 ~~~vy~~~~~-------------g~l~a~d~~tG~~~W~~~--~~---~~~~p~~~~~~vyv~~ 286 (377)
T TIGR03300 241 GGQVYAVSYQ-------------GRVAALDLRSGRVLWKRD--AS---SYQGPAVDDNRLYVTD 286 (377)
T ss_pred CCEEEEEEcC-------------CEEEEEECCCCcEEEeec--cC---CccCceEeCCEEEEEC
Confidence 8888875431 258889987765 7552 11 1223334566777654
No 59
>PRK13684 Ycf48-like protein; Provisional
Probab=96.30 E-value=1.1 Score=42.94 Aligned_cols=244 Identities=11% Similarity=0.035 Sum_probs=115.5
Q ss_pred ceeeccCCCCcEEEcCC-CCCCCCc-eeEEEECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCC-CCCCCceeeEE
Q 013909 98 TFADLPAPDLEWEQMPS-APVPRLD-GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDM-PKDMAHSHLGV 174 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~-~p~~R~~-~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~-~~~~~r~~~~~ 174 (434)
.++.-.-.-.+|++... +|..... .++...++..|+.|.. ..+++=+-.-.+|+++... ..|. ......
T Consensus 67 ~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~~~~~~G~~-------g~i~~S~DgG~tW~~~~~~~~~~~-~~~~i~ 138 (334)
T PRK13684 67 TLLETNDGGETWEERSLDLPEENFRLISISFKGDEGWIVGQP-------SLLLHTTDGGKNWTRIPLSEKLPG-SPYLIT 138 (334)
T ss_pred EEEEEcCCCCCceECccCCcccccceeeeEEcCCcEEEeCCC-------ceEEEECCCCCCCeEccCCcCCCC-CceEEE
Confidence 34443334568998754 3323322 2333335556666421 1133322233589987532 1111 112222
Q ss_pred EEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEee
Q 013909 175 VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVK 254 (434)
Q Consensus 175 ~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 254 (434)
++-++.+|+.|. ...+++=+-.-.+|+.+..... -.-+.+....+..+++.|..+. .|..
T Consensus 139 ~~~~~~~~~~g~---------~G~i~~S~DgG~tW~~~~~~~~-g~~~~i~~~~~g~~v~~g~~G~-------i~~s--- 198 (334)
T PRK13684 139 ALGPGTAEMATN---------VGAIYRTTDGGKNWEALVEDAA-GVVRNLRRSPDGKYVAVSSRGN-------FYST--- 198 (334)
T ss_pred EECCCcceeeec---------cceEEEECCCCCCceeCcCCCc-ceEEEEEECCCCeEEEEeCCce-------EEEE---
Confidence 333455666654 1334544445678998864332 2333444444444555443331 1211
Q ss_pred ccccccCceEEccCCCCCCCceeEE-EECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEe---CCCCCeEEcC
Q 013909 255 DGKALEKAWRTEIPIPRGGPHRACF-VFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYML---DDEMKWKVLP 330 (434)
Q Consensus 255 ~~~~~~~~W~~~~~~p~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y---d~~~~W~~~~ 330 (434)
.+....+|+.......... .+++ .-+++++++|.. +. + .+ |...+|+.+.
T Consensus 199 -~~~gg~tW~~~~~~~~~~l-~~i~~~~~g~~~~vg~~-G~----------------------~-~~~s~d~G~sW~~~~ 252 (334)
T PRK13684 199 -WEPGQTAWTPHQRNSSRRL-QSMGFQPDGNLWMLARG-GQ----------------------I-RFNDPDDLESWSKPI 252 (334)
T ss_pred -cCCCCCeEEEeeCCCcccc-eeeeEcCCCCEEEEecC-CE----------------------E-EEccCCCCCcccccc
Confidence 0123457988744322222 2333 347888888753 21 2 22 2556999764
Q ss_pred CCCCC-CCccceeEEE-ECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccC-CCceeeeeeEE-ECCEEEE
Q 013909 331 PMPKP-NSHIECAWVI-VNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKL-PYRIKTTLTGF-WDGWLYF 406 (434)
Q Consensus 331 ~~p~~-r~~~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~l-p~~r~~~~~~~-~~~~l~v 406 (434)
.|.. ....-.+++. .++.++++|... .++.-.....+|+.+... ..+.....++. -+++.|+
T Consensus 253 -~~~~~~~~~l~~v~~~~~~~~~~~G~~G-------------~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (334)
T PRK13684 253 -IPEITNGYGYLDLAYRTPGEIWAGGGNG-------------TLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV 318 (334)
T ss_pred -CCccccccceeeEEEcCCCCEEEEcCCC-------------eEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE
Confidence 2311 1111112233 366788877532 244444456799987431 12223444444 4678888
Q ss_pred Ecc
Q 013909 407 TSG 409 (434)
Q Consensus 407 ~GG 409 (434)
+|.
T Consensus 319 ~G~ 321 (334)
T PRK13684 319 LGQ 321 (334)
T ss_pred ECC
Confidence 776
No 60
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.29 E-value=0.79 Score=41.17 Aligned_cols=125 Identities=20% Similarity=0.245 Sum_probs=73.1
Q ss_pred hccceeeccCCCC--cEEEcCCCCCCCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCc--eE-ecCCCCCCCCc
Q 013909 95 LSATFADLPAPDL--EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WV-DRFDMPKDMAH 169 (434)
Q Consensus 95 ~~~~~~~~~~~~~--~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~-~~~~~~~~~~r 169 (434)
....++.+|+.++ .|+.-. +. +........++.||+.... +.++.+|..+.+ |+ .....+....+
T Consensus 44 ~~~~l~~~d~~tG~~~W~~~~--~~-~~~~~~~~~~~~v~v~~~~-------~~l~~~d~~tG~~~W~~~~~~~~~~~~~ 113 (238)
T PF13360_consen 44 GDGNLYALDAKTGKVLWRFDL--PG-PISGAPVVDGGRVYVGTSD-------GSLYALDAKTGKVLWSIYLTSSPPAGVR 113 (238)
T ss_dssp TTSEEEEEETTTSEEEEEEEC--SS-CGGSGEEEETTEEEEEETT-------SEEEEEETTTSCEEEEEEE-SSCTCSTB
T ss_pred CCCEEEEEECCCCCEEEEeec--cc-cccceeeecccccccccce-------eeeEecccCCcceeeeeccccccccccc
Confidence 3447888888776 565543 22 2222246679999988621 159999988875 98 44332221123
Q ss_pred eeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCc--eEecCCCCCCcc--------cceEEEECCEEEEEcCCC
Q 013909 170 SHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK--WDSIPPLPSPRY--------SPATQLWRGRLHVMGGSK 238 (434)
Q Consensus 170 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~r~--------~~~~~~~~~~iyv~GG~~ 238 (434)
.....++.++.+|+... ...+..+|+++.+ |+.-...+..-. ....+..++.+|+..+..
T Consensus 114 ~~~~~~~~~~~~~~~~~---------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g 183 (238)
T PF13360_consen 114 SSSSPAVDGDRLYVGTS---------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG 183 (238)
T ss_dssp --SEEEEETTEEEEEET---------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS
T ss_pred cccCceEecCEEEEEec---------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC
Confidence 44455666888887653 3578999999775 766544433211 233334467888886543
No 61
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.15 E-value=0.55 Score=42.73 Aligned_cols=213 Identities=15% Similarity=0.113 Sum_probs=107.0
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe--CCEEEEEeccCCCCCCCCCceeEEEECC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~ 205 (434)
++.+|..-- ....++++|+.+++-+.+. ++. ..++++. ++.+|+... .....+|+.
T Consensus 11 ~g~l~~~D~------~~~~i~~~~~~~~~~~~~~-~~~-----~~G~~~~~~~g~l~v~~~----------~~~~~~d~~ 68 (246)
T PF08450_consen 11 DGRLYWVDI------PGGRIYRVDPDTGEVEVID-LPG-----PNGMAFDRPDGRLYVADS----------GGIAVVDPD 68 (246)
T ss_dssp TTEEEEEET------TTTEEEEEETTTTEEEEEE-SSS-----EEEEEEECTTSEEEEEET----------TCEEEEETT
T ss_pred CCEEEEEEc------CCCEEEEEECCCCeEEEEe-cCC-----CceEEEEccCCEEEEEEc----------CceEEEecC
Confidence 567777632 1246999999998765432 221 2334443 788988754 234666999
Q ss_pred CCceEecCCC-----CCCcccceEEEECCEEEEEcCCCCC-CCCCCcceEEEEeeccccccCceEEcc-CCCCCCCceeE
Q 013909 206 TRKWDSIPPL-----PSPRYSPATQLWRGRLHVMGGSKEN-RHTPGLEHWSIAVKDGKALEKAWRTEI-PIPRGGPHRAC 278 (434)
Q Consensus 206 t~~W~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~~~~~~~~~~~~~~W~~~~-~~p~~~~~~~~ 278 (434)
+.+++.+... +..+.+-.++.-++.||+.--.... .....-.+|.++ +. .+.+.+. .+..+ .++
T Consensus 69 ~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~-----~~-~~~~~~~~~~~~p---NGi 139 (246)
T PF08450_consen 69 TGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRID-----PD-GKVTVVADGLGFP---NGI 139 (246)
T ss_dssp TTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEE-----TT-SEEEEEEEEESSE---EEE
T ss_pred CCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEEC-----CC-CeEEEEecCcccc---cce
Confidence 9999888654 3334444455557888886321111 101013345443 44 3433332 22221 133
Q ss_pred EEE-CC-EEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CC--CCeEE---cCCCCCCCCccceeEEEECCEE
Q 013909 279 FVF-ND-RLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DE--MKWKV---LPPMPKPNSHIECAWVIVNNSI 350 (434)
Q Consensus 279 ~~~-~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~--~~W~~---~~~~p~~r~~~~~~~~~~~~~i 350 (434)
+.. ++ .+|+.--.. ..+++|| .. .++.. +..++.......--++-.++.|
T Consensus 140 ~~s~dg~~lyv~ds~~----------------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l 197 (246)
T PF08450_consen 140 AFSPDGKTLYVADSFN----------------------GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNL 197 (246)
T ss_dssp EEETTSSEEEEEETTT----------------------TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-E
T ss_pred EECCcchheeeccccc----------------------ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCE
Confidence 333 34 577754322 2488888 32 22432 2222222211221113347899
Q ss_pred EEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccCCCceeeeeeEEE----CCEEEEEc
Q 013909 351 IITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKLPYRIKTTLTGFW----DGWLYFTS 408 (434)
Q Consensus 351 ~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~----~~~l~v~G 408 (434)
|+..-.. +.|.+||++...-..+ .+|.++. +.+.+ .+.|||.-
T Consensus 198 ~va~~~~------------~~I~~~~p~G~~~~~i-~~p~~~~--t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 198 WVADWGG------------GRIVVFDPDGKLLREI-ELPVPRP--TNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEETT------------TEEEEEETTSCEEEEE-E-SSSSE--EEEEEESTTSSEEEEEE
T ss_pred EEEEcCC------------CEEEEECCCccEEEEE-cCCCCCE--EEEEEECCCCCEEEEEe
Confidence 9863211 3799999995555544 5664432 33333 25788753
No 62
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.12 E-value=0.1 Score=48.29 Aligned_cols=121 Identities=14% Similarity=0.164 Sum_probs=71.2
Q ss_pred EEEeccCCCCC-ceeeEEEEECCCCceEecCCCCCCCCceeeEEEE-eCCEEEEEeccCCCCCCCCCceeEEEECCCCce
Q 013909 132 YVFAGYGSLDY-VHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKW 209 (434)
Q Consensus 132 yv~GG~~~~~~-~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W 209 (434)
||-|-+..... .-..+-.||+.+.+|.....-.. -.-.++.. .+++||+.|-..-.+ .....+-.||..+.+|
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~---G~V~~l~~~~~~~Llv~G~ft~~~--~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGIS---GTVTDLQWASNNQLLVGGNFTLNG--TNSSNLATYDFKNQTW 76 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCCCCce---EEEEEEEEecCCEEEEEEeeEECC--CCceeEEEEecCCCee
Confidence 44444443332 23458889999999998654321 12233443 378888888654433 1246788999999999
Q ss_pred EecCC-----CCCCcccceEEEE-CCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccC
Q 013909 210 DSIPP-----LPSPRYSPATQLW-RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIP 268 (434)
Q Consensus 210 ~~~~~-----~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~ 268 (434)
+.++. +|.+......... .+++++.|... . ....+..|+ ..+|+.+..
T Consensus 77 ~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~-~-g~~~l~~~d---------Gs~W~~i~~ 130 (281)
T PF12768_consen 77 SSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSA-N-GSTFLMKYD---------GSSWSSIGS 130 (281)
T ss_pred eecCCcccccCCCcEEEEEeeccCCceEEEeceec-C-CCceEEEEc---------CCceEeccc
Confidence 98865 3444332222222 34688777652 1 123334443 778988655
No 63
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=95.98 E-value=0.18 Score=48.40 Aligned_cols=109 Identities=14% Similarity=0.170 Sum_probs=70.1
Q ss_pred ceeeccCCCCcEEEcCCCCCCCCceeEEEECCEEEEEeccCCCCCce----eeEEE--EEC--------CCCceEecCCC
Q 013909 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVH----SHVDV--YNF--------TDNKWVDRFDM 163 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~----~~v~~--yd~--------~t~~W~~~~~~ 163 (434)
....||..+..-..+|.++.+.....++.++++||++.......... ...+. |++ .+-.|+.+++.
T Consensus 87 ~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~P 166 (342)
T PF07893_consen 87 RTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLPPP 166 (342)
T ss_pred CeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEcCCCC
Confidence 57788999987777888887777777888899999998874332110 03444 442 22257887764
Q ss_pred CCCCCce-----eeEEEEe-CCEEEE-EeccCCCCCCCCCceeEEEECCCCceEecCC
Q 013909 164 PKDMAHS-----HLGVVSD-GRYIYI-VSGQYGPQCRGPTSRTFVLDSETRKWDSIPP 214 (434)
Q Consensus 164 ~~~~~r~-----~~~~~~~-~~~lyv-~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~ 214 (434)
|...... -.+-+++ +..|+| .-|.. .-.+.||.++.+|+++.+
T Consensus 167 Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~--------~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 167 PFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR--------WGTYSFDTESHEWRKHGD 216 (342)
T ss_pred CccccCCcccceEEEEEEecCCeEEEEecCCc--------eEEEEEEcCCcceeeccc
Confidence 4322111 2333444 778888 32211 247899999999999975
No 64
>PRK13684 Ycf48-like protein; Provisional
Probab=95.91 E-value=1.7 Score=41.64 Aligned_cols=204 Identities=11% Similarity=0.135 Sum_probs=99.0
Q ss_pred eeeccCCCCcEEEcCCC-CCCCCceeEEEE-CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEE
Q 013909 99 FADLPAPDLEWEQMPSA-PVPRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS 176 (434)
Q Consensus 99 ~~~~~~~~~~W~~~~~~-p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~ 176 (434)
++.-.-.-.+|+++... ..+.....+..+ ++.+++.|... .+++=+-.-++|+.+..... -.-+.+..
T Consensus 111 i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~G-------~i~~S~DgG~tW~~~~~~~~---g~~~~i~~ 180 (334)
T PRK13684 111 LLHTTDGGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNVG-------AIYRTTDGGKNWEALVEDAA---GVVRNLRR 180 (334)
T ss_pred EEEECCCCCCCeEccCCcCCCCCceEEEEECCCcceeeeccc-------eEEEECCCCCCceeCcCCCc---ceEEEEEE
Confidence 33333334599887532 222333334444 34566655321 25554555678998754332 23444555
Q ss_pred eCCEEEEEeccCCCCCCCCCceeEE-EECCCCceEecCCCCCCcccceEEE-ECCEEEEEcCCCCCCCCCCcceEEEEee
Q 013909 177 DGRYIYIVSGQYGPQCRGPTSRTFV-LDSETRKWDSIPPLPSPRYSPATQL-WRGRLHVMGGSKENRHTPGLEHWSIAVK 254 (434)
Q Consensus 177 ~~~~lyv~GG~~~~~~~~~~~~~~~-yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 254 (434)
..+..|++.|..+ .++. .|....+|+.+.. +..+.-.+++. -+++++++|.... . .+..
T Consensus 181 ~~~g~~v~~g~~G--------~i~~s~~~gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~vg~~G~-~------~~~s--- 241 (334)
T PRK13684 181 SPDGKYVAVSSRG--------NFYSTWEPGQTAWTPHQR-NSSRRLQSMGFQPDGNLWMLARGGQ-I------RFND--- 241 (334)
T ss_pred CCCCeEEEEeCCc--------eEEEEcCCCCCeEEEeeC-CCcccceeeeEcCCCCEEEEecCCE-E------EEcc---
Confidence 4444444444222 2222 2445567998853 44444444443 4678888864321 1 1100
Q ss_pred ccccccCceEEccCC-CCCCCc-eeEEEE-CCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeCCCCCeEEcCC
Q 013909 255 DGKALEKAWRTEIPI-PRGGPH-RACFVF-NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDDEMKWKVLPP 331 (434)
Q Consensus 255 ~~~~~~~~W~~~~~~-p~~~~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~W~~~~~ 331 (434)
+....+|+.+... +..... ++++.. ++.+|++|... . -+...|...+|+.++.
T Consensus 242 --~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G-~---------------------v~~S~d~G~tW~~~~~ 297 (334)
T PRK13684 242 --PDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNG-T---------------------LLVSKDGGKTWEKDPV 297 (334)
T ss_pred --CCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCC-e---------------------EEEeCCCCCCCeECCc
Confidence 0234588864321 111111 223333 66788887642 1 1333446679999753
Q ss_pred -CCCCCCccceeEEEECCEEEEEcCc
Q 013909 332 -MPKPNSHIECAWVIVNNSIIITGGT 356 (434)
Q Consensus 332 -~p~~r~~~~~~~~~~~~~i~v~GG~ 356 (434)
-..+..... .+...+++.|+.|..
T Consensus 298 ~~~~~~~~~~-~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 298 GEEVPSNFYK-IVFLDPEKGFVLGQR 322 (334)
T ss_pred CCCCCcceEE-EEEeCCCceEEECCC
Confidence 122222222 223457788887763
No 65
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.60 E-value=0.75 Score=44.48 Aligned_cols=174 Identities=14% Similarity=0.133 Sum_probs=95.3
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCC-CCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK-DMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~-~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
.-.+.+.+|.++.- .++..|-++|. .+.++.. ..|......+..+....+++|. -.-++.||.++
T Consensus 224 ~~plllvaG~d~~l----rifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r--------rky~ysyDle~ 289 (514)
T KOG2055|consen 224 TAPLLLVAGLDGTL----RIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR--------RKYLYSYDLET 289 (514)
T ss_pred CCceEEEecCCCcE----EEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc--------ceEEEEeeccc
Confidence 44699999987543 37777888776 3333221 1122222333344447777774 35688999999
Q ss_pred CceEecCCCC--CCcccce-EEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEECC
Q 013909 207 RKWDSIPPLP--SPRYSPA-TQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFND 283 (434)
Q Consensus 207 ~~W~~~~~~p--~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~ 283 (434)
.+-+++.++- ..+..+. .+..++.++++-|..+. ++-+. .+|+.|-....++-....++....+.
T Consensus 290 ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~-------I~lLh-----akT~eli~s~KieG~v~~~~fsSdsk 357 (514)
T KOG2055|consen 290 AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGH-------IHLLH-----AKTKELITSFKIEGVVSDFTFSSDSK 357 (514)
T ss_pred cccccccCCCCcccchhheeEecCCCCeEEEcccCce-------EEeeh-----hhhhhhhheeeeccEEeeEEEecCCc
Confidence 9988886542 1122111 23445566677665542 22222 55666655444444333333344456
Q ss_pred EEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCC----CeEEcCCCCCCCCccceeEE-EECCEEEEEcCc
Q 013909 284 RLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEM----KWKVLPPMPKPNSHIECAWV-IVNNSIIITGGT 356 (434)
Q Consensus 284 ~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~----~W~~~~~~p~~r~~~~~~~~-~~~~~i~v~GG~ 356 (434)
+|++.||.. .||++| ..+ +|..-... ++.+.| ..++..+..|..
T Consensus 358 ~l~~~~~~G-----------------------eV~v~nl~~~~~~~rf~D~G~v------~gts~~~S~ng~ylA~GS~ 407 (514)
T KOG2055|consen 358 ELLASGGTG-----------------------EVYVWNLRQNSCLHRFVDDGSV------HGTSLCISLNGSYLATGSD 407 (514)
T ss_pred EEEEEcCCc-----------------------eEEEEecCCcceEEEEeecCcc------ceeeeeecCCCceEEeccC
Confidence 677777753 499999 544 56554332 222223 356666666643
No 66
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.44 E-value=0.7 Score=42.90 Aligned_cols=118 Identities=18% Similarity=0.224 Sum_probs=67.3
Q ss_pred EeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEE-CCEEEEEcCCCCCC-CCCCcceEEEEeeccccccC
Q 013909 184 VSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW-RGRLHVMGGSKENR-HTPGLEHWSIAVKDGKALEK 261 (434)
Q Consensus 184 ~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~-~~~~~~~~~~~~~~~~~~~~ 261 (434)
+||.......-+...+-.||+.+.+|..+..--..- -.++... +++||+.|-..... .....-.|+ ..+.
T Consensus 3 VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd-------~~~~ 74 (281)
T PF12768_consen 3 VGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYD-------FKNQ 74 (281)
T ss_pred EeeecCCCCCcCCCEEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEe-------cCCC
Confidence 455433322234688999999999999886431111 1223333 77888888654333 233444555 5688
Q ss_pred ceEEccC-----CCCCCCceeEEE---ECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeCCCCCeEEcCC
Q 013909 262 AWRTEIP-----IPRGGPHRACFV---FNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDDEMKWKVLPP 331 (434)
Q Consensus 262 ~W~~~~~-----~p~~~~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~W~~~~~ 331 (434)
+|+.+.. +|.+.. +... -.+++++.|..... ..-+..| ...+|..+..
T Consensus 75 ~w~~~~~~~s~~ipgpv~--a~~~~~~d~~~~~~aG~~~~g-------------------~~~l~~~-dGs~W~~i~~ 130 (281)
T PF12768_consen 75 TWSSLGGGSSNSIPGPVT--ALTFISNDGSNFWVAGRSANG-------------------STFLMKY-DGSSWSSIGS 130 (281)
T ss_pred eeeecCCcccccCCCcEE--EEEeeccCCceEEEeceecCC-------------------CceEEEE-cCCceEeccc
Confidence 9988655 343332 2222 24568877775221 2246777 4558988764
No 67
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.33 E-value=2 Score=39.03 Aligned_cols=104 Identities=14% Similarity=0.138 Sum_probs=58.4
Q ss_pred ccceeeccCCCCcEEEcCCCCCCCCceeEEEE--CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCC---CCCce
Q 013909 96 SATFADLPAPDLEWEQMPSAPVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK---DMAHS 170 (434)
Q Consensus 96 ~~~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~---~~~r~ 170 (434)
...++.+++.+.+-+.. ..+. ..+++.. ++++|+..... ..++|+.+++++.+...+. +..+.
T Consensus 21 ~~~i~~~~~~~~~~~~~-~~~~---~~G~~~~~~~g~l~v~~~~~--------~~~~d~~~g~~~~~~~~~~~~~~~~~~ 88 (246)
T PF08450_consen 21 GGRIYRVDPDTGEVEVI-DLPG---PNGMAFDRPDGRLYVADSGG--------IAVVDPDTGKVTVLADLPDGGVPFNRP 88 (246)
T ss_dssp TTEEEEEETTTTEEEEE-ESSS---EEEEEEECTTSEEEEEETTC--------EEEEETTTTEEEEEEEEETTCSCTEEE
T ss_pred CCEEEEEECCCCeEEEE-ecCC---CceEEEEccCCEEEEEEcCc--------eEEEecCCCcEEEEeeccCCCcccCCC
Confidence 34788888877654332 2222 3344444 67888876422 5667999999988765531 22344
Q ss_pred eeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEec
Q 013909 171 HLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSI 212 (434)
Q Consensus 171 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~ 212 (434)
.-.++.-++.||+---............++++++. .+.+.+
T Consensus 89 ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 89 NDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp EEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred ceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 44444457888885322111111111579999998 665554
No 68
>smart00284 OLF Olfactomedin-like domains.
Probab=95.17 E-value=0.96 Score=41.11 Aligned_cols=141 Identities=18% Similarity=0.208 Sum_probs=77.0
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECC----CCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEE
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFT----DNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLD 203 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~----t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd 203 (434)
++++|++-+... ..+.++.|.-. ...+.+.-.+|. +-.+.+.++.+|.||.--. ....+.+||
T Consensus 34 ~~~~wv~~~~~~---~~~~v~ey~~~~~f~~~~~~~~~~Lp~--~~~GtG~VVYngslYY~~~--------~s~~iiKyd 100 (255)
T smart00284 34 KSLYWYMPLNTR---VLRSVREYSSMSDFQMGKNPTDHPLPH--AGQGTGVVVYNGSLYFNKF--------NSHDICRFD 100 (255)
T ss_pred CceEEEEccccC---CCcEEEEecCHHHHhccCCceEEECCC--ccccccEEEECceEEEEec--------CCccEEEEE
Confidence 477898866531 12345565432 333433334554 4667778999999998532 147799999
Q ss_pred CCCCceEecCCCCCCc------------ccceEEEECCEEEEEcCCC---CCCCCCCcceEEEEeeccccccCceEEccC
Q 013909 204 SETRKWDSIPPLPSPR------------YSPATQLWRGRLHVMGGSK---ENRHTPGLEHWSIAVKDGKALEKAWRTEIP 268 (434)
Q Consensus 204 ~~t~~W~~~~~~p~~r------------~~~~~~~~~~~iyv~GG~~---~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~ 268 (434)
..+++-.....+|.+. ...-.++-++-|+|+=... +.-....++-.+++ ...+|.. +
T Consensus 101 L~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~------ve~tW~T--~ 172 (255)
T smart00284 101 LTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLT------IENTWIT--T 172 (255)
T ss_pred CCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccce------EEEEEEc--C
Confidence 9998865444444321 1122344556677662221 11111122222221 2467877 3
Q ss_pred CCCCCCceeEEEECCEEEEEcC
Q 013909 269 IPRGGPHRACFVFNDRLFVVGG 290 (434)
Q Consensus 269 ~p~~~~~~~~~~~~~~iyv~GG 290 (434)
.++...+ .+.++-|.||++-.
T Consensus 173 ~~k~sa~-naFmvCGvLY~~~s 193 (255)
T smart00284 173 YNKRSAS-NAFMICGILYVTRS 193 (255)
T ss_pred CCccccc-ccEEEeeEEEEEcc
Confidence 4433332 56677799999964
No 69
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.15 E-value=1.8 Score=42.24 Aligned_cols=103 Identities=8% Similarity=0.046 Sum_probs=56.0
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCce-EecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKW-VDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
+|+++..|+..+ .|.+||..+..- ..+..-..| -...-....++.++++|+-+ ..+-.+|..+
T Consensus 79 DG~LlaaGD~sG------~V~vfD~k~r~iLR~~~ah~ap--v~~~~f~~~d~t~l~s~sDd--------~v~k~~d~s~ 142 (487)
T KOG0310|consen 79 DGRLLAAGDESG------HVKVFDMKSRVILRQLYAHQAP--VHVTKFSPQDNTMLVSGSDD--------KVVKYWDLST 142 (487)
T ss_pred CCeEEEccCCcC------cEEEeccccHHHHHHHhhccCc--eeEEEecccCCeEEEecCCC--------ceEEEEEcCC
Confidence 799999998654 388899665321 111222222 12223456789999998732 2233344444
Q ss_pred CceE-ecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEE
Q 013909 207 RKWD-SIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSI 251 (434)
Q Consensus 207 ~~W~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 251 (434)
..-+ .+..-...-...++...++.|++.||+++ .+..||.
T Consensus 143 a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg-----~vrl~Dt 183 (487)
T KOG0310|consen 143 AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDG-----KVRLWDT 183 (487)
T ss_pred cEEEEEecCCcceeEeeccccCCCeEEEecCCCc-----eEEEEEe
Confidence 3311 11111111222334456889999999875 5667774
No 70
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=94.50 E-value=1.2 Score=40.60 Aligned_cols=184 Identities=17% Similarity=0.218 Sum_probs=99.9
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECC-----CCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEE
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFT-----DNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVL 202 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~-----t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~y 202 (434)
.+++|++.+..+. .++.|.-. .++..+.-.||. +-.+.+.++.+|.||.--. .++.+.+|
T Consensus 30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~~Lp~--~~~GtG~vVYngslYY~~~--------~s~~Ivky 94 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTYKLPY--PWQGTGHVVYNGSLYYNKY--------NSRNIVKY 94 (250)
T ss_pred CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEEEEec--eeccCCeEEECCcEEEEec--------CCceEEEE
Confidence 5679999887644 35555332 223333334444 4566677889999997522 25889999
Q ss_pred ECCCCceEecCCCCCCcc------------cceEEEECCEEEEEcCCCCCCC---CCCcceEEEEeeccccccCceEEcc
Q 013909 203 DSETRKWDSIPPLPSPRY------------SPATQLWRGRLHVMGGSKENRH---TPGLEHWSIAVKDGKALEKAWRTEI 267 (434)
Q Consensus 203 d~~t~~W~~~~~~p~~r~------------~~~~~~~~~~iyv~GG~~~~~~---~~~~~~~~~~~~~~~~~~~~W~~~~ 267 (434)
|+.++.-.....+|.+.. ..-.++-++-|+|+=....... ...++.-++ ....+|...
T Consensus 95 dL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL------~v~~tw~T~- 167 (250)
T PF02191_consen 95 DLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETL------SVEQTWNTS- 167 (250)
T ss_pred ECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccC------ceEEEEEec-
Confidence 999987552222332222 2334455667887744432211 111111111 135677764
Q ss_pred CCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEEE
Q 013909 268 PIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIV 346 (434)
Q Consensus 268 ~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~ 346 (434)
.++...+ .+.++-|.||++-..+... ..-.+.|| .+++=.. ..++.+......+++..
T Consensus 168 -~~k~~~~-naFmvCGvLY~~~s~~~~~------------------~~I~yafDt~t~~~~~-~~i~f~~~~~~~~~l~Y 226 (250)
T PF02191_consen 168 -YPKRSAG-NAFMVCGVLYATDSYDTRD------------------TEIFYAFDTYTGKEED-VSIPFPNPYGNISMLSY 226 (250)
T ss_pred -cCchhhc-ceeeEeeEEEEEEECCCCC------------------cEEEEEEECCCCceec-eeeeeccccCceEeeeE
Confidence 3443332 5667789999998765331 22468898 5544333 34444443333333433
Q ss_pred ---CCEEEEEc
Q 013909 347 ---NNSIIITG 354 (434)
Q Consensus 347 ---~~~i~v~G 354 (434)
+.+||+.-
T Consensus 227 NP~dk~LY~wd 237 (250)
T PF02191_consen 227 NPRDKKLYAWD 237 (250)
T ss_pred CCCCCeEEEEE
Confidence 56788765
No 71
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.72 E-value=6.2 Score=37.11 Aligned_cols=204 Identities=14% Similarity=0.135 Sum_probs=88.2
Q ss_pred eeeccCCCCcEEEcCC-CCCCCCceeEEEE-CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEE
Q 013909 99 FADLPAPDLEWEQMPS-APVPRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS 176 (434)
Q Consensus 99 ~~~~~~~~~~W~~~~~-~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~ 176 (434)
+..-.-.-.+|++++- .+.|-..+.+..+ ++.++++|... .+++=.-.-.+|+.+..-.. .-.......
T Consensus 83 ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G-------~iy~T~DgG~tW~~~~~~~~--gs~~~~~r~ 153 (302)
T PF14870_consen 83 LLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRG-------AIYRTTDGGKTWQAVVSETS--GSINDITRS 153 (302)
T ss_dssp EEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT---------EEEESSTTSSEEEEE-S------EEEEEE-
T ss_pred EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCC-------cEEEeCCCCCCeeEcccCCc--ceeEeEEEC
Confidence 3444445669999862 3344444555444 56777776431 25555555668998654222 112222233
Q ss_pred eCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeecc
Q 013909 177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDG 256 (434)
Q Consensus 177 ~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~ 256 (434)
-++++++++- .+ +-+...|+-...|+........|-..-...-++.|+++. ..+. ++..+ .
T Consensus 154 ~dG~~vavs~-~G-------~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~-------~~~s~---~ 214 (302)
T PF14870_consen 154 SDGRYVAVSS-RG-------NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQ-------IQFSD---D 214 (302)
T ss_dssp TTS-EEEEET-TS-------SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTE-------EEEEE----
T ss_pred CCCcEEEEEC-cc-------cEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcE-------EEEcc---C
Confidence 4667666653 11 223456888888988764433333322334467787765 2221 11110 0
Q ss_pred ccccCceEEc-cCCCCCCCcee-EEEE-CCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEE-eCCCCCeEEcCC-
Q 013909 257 KALEKAWRTE-IPIPRGGPHRA-CFVF-NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYM-LDDEMKWKVLPP- 331 (434)
Q Consensus 257 ~~~~~~W~~~-~~~p~~~~~~~-~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-yd~~~~W~~~~~- 331 (434)
....++|.+. .|.+...++.- ++.. ++.+++.||... +++ -|..++|++...
T Consensus 215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~-----------------------l~~S~DgGktW~~~~~~ 271 (302)
T PF14870_consen 215 PDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT-----------------------LLVSTDGGKTWQKDRVG 271 (302)
T ss_dssp TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT------------------------EEEESSTTSS-EE-GGG
T ss_pred CCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCcc-----------------------EEEeCCCCccceECccc
Confidence 0235677773 23333444322 2222 789999998642 443 347789999753
Q ss_pred --CCCCCCccceeEEEECCEEEEEcCc
Q 013909 332 --MPKPNSHIECAWVIVNNSIIITGGT 356 (434)
Q Consensus 332 --~p~~r~~~~~~~~~~~~~i~v~GG~ 356 (434)
.|.-.++ -....+++-+++|-.
T Consensus 272 ~~~~~n~~~---i~f~~~~~gf~lG~~ 295 (302)
T PF14870_consen 272 ENVPSNLYR---IVFVNPDKGFVLGQD 295 (302)
T ss_dssp TTSSS---E---EEEEETTEEEEE-ST
T ss_pred cCCCCceEE---EEEcCCCceEEECCC
Confidence 3322332 224566799999863
No 72
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=93.58 E-value=5.4 Score=35.99 Aligned_cols=206 Identities=11% Similarity=0.119 Sum_probs=91.6
Q ss_pred EEECCEEEE---EeccCCCCCceeeEEEEECC-CCceEec---CCCCC--C-CCceeeEEEEeCCEEEEEeccCCCCCCC
Q 013909 125 IQIKNLFYV---FAGYGSLDYVHSHVDVYNFT-DNKWVDR---FDMPK--D-MAHSHLGVVSDGRYIYIVSGQYGPQCRG 194 (434)
Q Consensus 125 ~~~~~~iyv---~GG~~~~~~~~~~v~~yd~~-t~~W~~~---~~~~~--~-~~r~~~~~~~~~~~lyv~GG~~~~~~~~ 194 (434)
.++++-||. .|-+-+... +.-.|+=.-. .++|+.- .++.. | ..-.+.++.+++++||.+=-...-. ..
T Consensus 22 FVy~~VIYAPfM~~~RHGv~~-LhvaWVkSgDdG~TWttPEwLtd~H~~yptvnyHCmSMGv~~NRLfa~iEtR~~a-~~ 99 (367)
T PF12217_consen 22 FVYDNVIYAPFMAGDRHGVDN-LHVAWVKSGDDGQTWTTPEWLTDLHPDYPTVNYHCMSMGVVGNRLFAVIETRTVA-SN 99 (367)
T ss_dssp EEETTEEEEEEEEESSSSSTT--EEEEEEESSTTSS----EESS---TTTTTEEEE-B-EEEETTEEEEEEEEEETT-T-
T ss_pred eeecCeeecccccccccCccc-eEEEEEEecCCCCcccCchhhhhcCCCCCccceeeeeeeeecceeeEEEeehhhh-hh
Confidence 345666653 333333333 2224444443 3468642 22211 1 2345566788999999874321111 12
Q ss_pred CCceeEEEE---CCCCceEec--CCCCC-------CcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCc
Q 013909 195 PTSRTFVLD---SETRKWDSI--PPLPS-------PRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKA 262 (434)
Q Consensus 195 ~~~~~~~yd---~~t~~W~~~--~~~p~-------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (434)
.+...+.|| ...+.|+.. +..|. .-.-|+.|.+++.-|.+|=.++......+-.+-+ .+.
T Consensus 100 km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yf--------s~~ 171 (367)
T PF12217_consen 100 KMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYF--------SDA 171 (367)
T ss_dssp -EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEE--------TTT
T ss_pred hhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEe--------ccc
Confidence 344556665 467889654 34443 3456788888888888885554332222222211 233
Q ss_pred eEE--------cc-CCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCC
Q 013909 263 WRT--------EI-PIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPM 332 (434)
Q Consensus 263 W~~--------~~-~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~ 332 (434)
|.. ++ ...+..+..++-.+++.+|+.--..-.+ ..-..+.+-+ ....|..+. .
T Consensus 172 ~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~----------------~~GS~L~rs~d~G~~w~slr-f 234 (367)
T PF12217_consen 172 FASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPT----------------NPGSSLHRSDDNGQNWSSLR-F 234 (367)
T ss_dssp TT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TT----------------S---EEEEESSTTSS-EEEE--
T ss_pred ccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCCC----------------CCcceeeeecccCCchhhcc-c
Confidence 322 11 2233334446667799999986322111 1223466665 666898873 1
Q ss_pred CCCCCccceeEEEECCEEEEEcCcC
Q 013909 333 PKPNSHIECAWVIVNNSIIITGGTT 357 (434)
Q Consensus 333 p~~r~~~~~~~~~~~~~i~v~GG~~ 357 (434)
|........-.+.+++.||+||...
T Consensus 235 p~nvHhtnlPFakvgD~l~mFgsER 259 (367)
T PF12217_consen 235 PNNVHHTNLPFAKVGDVLYMFGSER 259 (367)
T ss_dssp TT---SS---EEEETTEEEEEEE-S
T ss_pred cccccccCCCceeeCCEEEEEeccc
Confidence 2111111122378999999999543
No 73
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=93.22 E-value=2 Score=41.72 Aligned_cols=135 Identities=10% Similarity=0.078 Sum_probs=75.4
Q ss_pred hhccceeeccCCCCcEEEcCCCC---CCCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCce
Q 013909 94 FLSATFADLPAPDLEWEQMPSAP---VPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHS 170 (434)
Q Consensus 94 ~~~~~~~~~~~~~~~W~~~~~~p---~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~ 170 (434)
.-...++.||..+.+-+++.++- .+-...-.++.++.++++-|..+ .+......|++|-. .+..+..-.
T Consensus 277 ~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G------~I~lLhakT~eli~--s~KieG~v~ 348 (514)
T KOG2055|consen 277 GRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG------HIHLLHAKTKELIT--SFKIEGVVS 348 (514)
T ss_pred ccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCc------eEEeehhhhhhhhh--eeeeccEEe
Confidence 34457899999998877776642 22222222444566667766543 26667777887753 333322334
Q ss_pred eeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEE-EECCEEEEEcCCCCCCCCCCcceE
Q 013909 171 HLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQ-LWRGRLHVMGGSKENRHTPGLEHW 249 (434)
Q Consensus 171 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~ 249 (434)
..+....+.+|++.|| ...||.+|..++.....-----...+.+.| ..++. |+.-|.+ ...+.+|
T Consensus 349 ~~~fsSdsk~l~~~~~---------~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~-ylA~GS~----~GiVNIY 414 (514)
T KOG2055|consen 349 DFTFSSDSKELLASGG---------TGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGS-YLATGSD----SGIVNIY 414 (514)
T ss_pred eEEEecCCcEEEEEcC---------CceEEEEecCCcceEEEEeecCccceeeeeecCCCc-eEEeccC----cceEEEe
Confidence 4445555678888888 357999999987532221111122333344 44666 4444443 2345666
Q ss_pred E
Q 013909 250 S 250 (434)
Q Consensus 250 ~ 250 (434)
+
T Consensus 415 d 415 (514)
T KOG2055|consen 415 D 415 (514)
T ss_pred c
Confidence 5
No 74
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=93.17 E-value=5.2 Score=34.93 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=18.0
Q ss_pred EECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCc
Q 013909 345 IVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLT 381 (434)
Q Consensus 345 ~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~ 381 (434)
..++++|+|-|. ..++||..+++
T Consensus 156 ~~~~~~yfF~g~--------------~y~~~d~~~~~ 178 (194)
T cd00094 156 WLDGYYYFFKGD--------------QYWRFDPRSKE 178 (194)
T ss_pred eCCCcEEEEECC--------------EEEEEeCccce
Confidence 444899999883 68999988776
No 75
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=92.87 E-value=7.6 Score=35.69 Aligned_cols=64 Identities=17% Similarity=0.274 Sum_probs=36.4
Q ss_pred EEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEE--eCCEEEEEeccCCCCCCCCCceeEEEECCCC
Q 013909 130 LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS--DGRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (434)
Q Consensus 130 ~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~ 207 (434)
++|+.++.++ .+.+||+.+++-...-.... .++ +++. .+..+|+.++. ...+..||+.+.
T Consensus 2 ~~~~s~~~d~------~v~~~d~~t~~~~~~~~~~~-~~~---~l~~~~dg~~l~~~~~~--------~~~v~~~d~~~~ 63 (300)
T TIGR03866 2 KAYVSNEKDN------TISVIDTATLEVTRTFPVGQ-RPR---GITLSKDGKLLYVCASD--------SDTIQVIDLATG 63 (300)
T ss_pred cEEEEecCCC------EEEEEECCCCceEEEEECCC-CCC---ceEECCCCCEEEEEECC--------CCeEEEEECCCC
Confidence 5677766542 48889998876433222111 112 2333 23467777652 256888999887
Q ss_pred ceEe
Q 013909 208 KWDS 211 (434)
Q Consensus 208 ~W~~ 211 (434)
+...
T Consensus 64 ~~~~ 67 (300)
T TIGR03866 64 EVIG 67 (300)
T ss_pred cEEE
Confidence 6644
No 76
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.76 E-value=11 Score=37.12 Aligned_cols=243 Identities=8% Similarity=0.029 Sum_probs=113.8
Q ss_pred eeeccCCCCcEEEcCC--C-CCCC--CceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeE
Q 013909 99 FADLPAPDLEWEQMPS--A-PVPR--LDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLG 173 (434)
Q Consensus 99 ~~~~~~~~~~W~~~~~--~-p~~R--~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~ 173 (434)
+..-+-.-.+|++... . ...+ ...++...++..|++|-.. .+..=+-.-++|++++..+.. +.....
T Consensus 112 IL~T~DGG~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~G-------~il~T~DgG~tW~~~~~~~~~-p~~~~~ 183 (398)
T PLN00033 112 LLETKDGGKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKPA-------ILLHTSDGGETWERIPLSPKL-PGEPVL 183 (398)
T ss_pred EEEEcCCCCCceECccCcccccccccceeeeEEECCEEEEEcCce-------EEEEEcCCCCCceECccccCC-CCCceE
Confidence 3443445568988542 1 1111 2234445577888885321 133323334689987542211 111223
Q ss_pred EEEe-CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCC----CCcc--------------cceEE-EECCEEEE
Q 013909 174 VVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP----SPRY--------------SPATQ-LWRGRLHV 233 (434)
Q Consensus 174 ~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p----~~r~--------------~~~~~-~~~~~iyv 233 (434)
+... ++.++++|.. ..+++-+-.-.+|+.+...+ ..+. ...+. .-++++++
T Consensus 184 i~~~~~~~~~ivg~~---------G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~ 254 (398)
T PLN00033 184 IKATGPKSAEMVTDE---------GAIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVA 254 (398)
T ss_pred EEEECCCceEEEecc---------ceEEEECCCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEE
Confidence 3333 4567887731 23555444556898872211 1110 01111 12344555
Q ss_pred EcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCcccccccccee
Q 013909 234 MGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVV 313 (434)
Q Consensus 234 ~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~ 313 (434)
+|-.. ..|... |+....|+.................++.++++|...
T Consensus 255 vg~~G--------~~~~s~----d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G--------------------- 301 (398)
T PLN00033 255 VSSRG--------NFYLTW----EPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGG--------------------- 301 (398)
T ss_pred EECCc--------cEEEec----CCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCc---------------------
Confidence 54221 122211 122234887654333332223334588888887532
Q ss_pred eCcEEEeC-CCCCe-----EEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEecc
Q 013909 314 YGDVYMLD-DEMKW-----KVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGK 387 (434)
Q Consensus 314 ~~~v~~yd-~~~~W-----~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 387 (434)
.++.-+ ....| .+++ .+..+......+...++.+++.|... -+++-....++|+....
T Consensus 302 --~l~~S~d~G~~~~~~~f~~~~-~~~~~~~l~~v~~~~d~~~~a~G~~G-------------~v~~s~D~G~tW~~~~~ 365 (398)
T PLN00033 302 --GLYVSKGTGLTEEDFDFEEAD-IKSRGFGILDVGYRSKKEAWAAGGSG-------------ILLRSTDGGKSWKRDKG 365 (398)
T ss_pred --eEEEecCCCCcccccceeecc-cCCCCcceEEEEEcCCCcEEEEECCC-------------cEEEeCCCCcceeEccc
Confidence 133333 44444 4433 22222222212233466888888642 35555667889999752
Q ss_pred ---CCCceeeeeeE-EECCEEEEEcc
Q 013909 388 ---LPYRIKTTLTG-FWDGWLYFTSG 409 (434)
Q Consensus 388 ---lp~~r~~~~~~-~~~~~l~v~GG 409 (434)
++.+. ..+. .-+++.|++|-
T Consensus 366 ~~~~~~~l--y~v~f~~~~~g~~~G~ 389 (398)
T PLN00033 366 ADNIAANL--YSVKFFDDKKGFVLGN 389 (398)
T ss_pred cCCCCcce--eEEEEcCCCceEEEeC
Confidence 22222 3333 33578888874
No 77
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=92.46 E-value=6.5 Score=34.32 Aligned_cols=93 Identities=16% Similarity=0.205 Sum_probs=47.5
Q ss_pred EEEECCEEEEEeccCCCCCceeeEEEEECCCCce--EecC----CCCCCCCceeeEEEEeC-CEEEEEeccCCCCCCCCC
Q 013909 124 AIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKW--VDRF----DMPKDMAHSHLGVVSDG-RYIYIVSGQYGPQCRGPT 196 (434)
Q Consensus 124 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W--~~~~----~~~~~~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~ 196 (434)
++...+++|+|-|. .+|+++...... ..+. .+|. .-..+....+ +++|+|-|
T Consensus 12 ~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p~---~IDAa~~~~~~~~~yfFkg---------- 70 (194)
T cd00094 12 VTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLPS---PVDAAFERPDTGKIYFFKG---------- 70 (194)
T ss_pred EEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCCC---CccEEEEECCCCEEEEECC----------
Confidence 44456899999763 377777652211 1121 1221 2222333333 89999976
Q ss_pred ceeEEEECCCCceE---ecCCCCCCc--ccc-eEEEE--CCEEEEEcCC
Q 013909 197 SRTFVLDSETRKWD---SIPPLPSPR--YSP-ATQLW--RGRLHVMGGS 237 (434)
Q Consensus 197 ~~~~~yd~~t~~W~---~~~~~p~~r--~~~-~~~~~--~~~iyv~GG~ 237 (434)
+.+|+||..+..+. .+...+.+. ... ++... ++++|+|-|.
T Consensus 71 ~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~ 119 (194)
T cd00094 71 DKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD 119 (194)
T ss_pred CEEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC
Confidence 57888887652221 111111111 111 22233 6899999874
No 78
>PRK04792 tolB translocation protein TolB; Provisional
Probab=92.10 E-value=14 Score=36.99 Aligned_cols=187 Identities=12% Similarity=0.084 Sum_probs=91.9
Q ss_pred eeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceE
Q 013909 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPAT 224 (434)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~ 224 (434)
..++++|+.+++-+.+...+. .....+..-.+.+|++....++ ..+++.+|..+.+.+.+..-....... .
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g--~~~~~~wSPDG~~La~~~~~~g------~~~Iy~~dl~tg~~~~lt~~~~~~~~p-~ 312 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPG--INGAPRFSPDGKKLALVLSKDG------QPEIYVVDIATKALTRITRHRAIDTEP-S 312 (448)
T ss_pred cEEEEEECCCCCeEEecCCCC--CcCCeeECCCCCEEEEEEeCCC------CeEEEEEECCCCCeEECccCCCCccce-E
Confidence 459999999988777765543 1122222223556766543221 357999999999888775432111111 1
Q ss_pred EEECC-EEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCc
Q 013909 225 QLWRG-RLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPI 303 (434)
Q Consensus 225 ~~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 303 (434)
..-++ +|++.....+ ..++|.++ ..+.+++.+......... ....-+++.+++......
T Consensus 313 wSpDG~~I~f~s~~~g-----~~~Iy~~d-----l~~g~~~~Lt~~g~~~~~-~~~SpDG~~l~~~~~~~g--------- 372 (448)
T PRK04792 313 WHPDGKSLIFTSERGG-----KPQIYRVN-----LASGKVSRLTFEGEQNLG-GSITPDGRSMIMVNRTNG--------- 372 (448)
T ss_pred ECCCCCEEEEEECCCC-----CceEEEEE-----CCCCCEEEEecCCCCCcC-eeECCCCCEEEEEEecCC---------
Confidence 12244 4554432221 22344433 456666655321111111 122335544444433221
Q ss_pred cccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCce
Q 013909 304 FKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTW 382 (434)
Q Consensus 304 ~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W 382 (434)
...++.+| .+.+.+.+..-... ... + ...+++.+++....+.. ..+++++.+ ..+
T Consensus 373 ----------~~~I~~~dl~~g~~~~lt~~~~d-~~p--s-~spdG~~I~~~~~~~g~---------~~l~~~~~~-G~~ 428 (448)
T PRK04792 373 ----------KFNIARQDLETGAMQVLTSTRLD-ESP--S-VAPNGTMVIYSTTYQGK---------QVLAAVSID-GRF 428 (448)
T ss_pred ----------ceEEEEEECCCCCeEEccCCCCC-CCc--e-ECCCCCEEEEEEecCCc---------eEEEEEECC-CCc
Confidence 12588888 66677766532211 111 1 34466655554433222 257777764 444
Q ss_pred EE
Q 013909 383 SV 384 (434)
Q Consensus 383 ~~ 384 (434)
..
T Consensus 429 ~~ 430 (448)
T PRK04792 429 KA 430 (448)
T ss_pred eE
Confidence 44
No 79
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=92.03 E-value=2 Score=40.81 Aligned_cols=140 Identities=16% Similarity=0.127 Sum_probs=76.7
Q ss_pred CEEEEEeccC-CCCCCCCC-ceeEEEECCCC-----ceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEE
Q 013909 179 RYIYIVSGQY-GPQCRGPT-SRTFVLDSETR-----KWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSI 251 (434)
Q Consensus 179 ~~lyv~GG~~-~~~~~~~~-~~~~~yd~~t~-----~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 251 (434)
..++++|... ......+. -.+..|+.... +.+.+.....+-.-.+++.++++|.+.-| +.+..|++
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g-------~~l~v~~l 114 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG-------NKLYVYDL 114 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET-------TEEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec-------CEEEEEEc
Confidence 4677777542 22211122 66889998885 56666544444445667788999777655 34556665
Q ss_pred EeeccccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcC
Q 013909 252 AVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLP 330 (434)
Q Consensus 252 ~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~ 330 (434)
. ..+++...+.........++...++.|++---..+- .++.|+ ...+-..++
T Consensus 115 ~------~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv---------------------~~~~~~~~~~~l~~va 167 (321)
T PF03178_consen 115 D------NSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSV---------------------SLLRYDEENNKLILVA 167 (321)
T ss_dssp E------TTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSE---------------------EEEEEETTTE-EEEEE
T ss_pred c------CcccchhhheecceEEEEEEeccccEEEEEEcccCE---------------------EEEEEEccCCEEEEEE
Confidence 3 222477766655555555777788877765433322 255677 444677776
Q ss_pred CCCCCCCccceeEEEE-CCEEEEEcC
Q 013909 331 PMPKPNSHIECAWVIV-NNSIIITGG 355 (434)
Q Consensus 331 ~~p~~r~~~~~~~~~~-~~~i~v~GG 355 (434)
.-+.++.-. ++..+ ++. .++++
T Consensus 168 ~d~~~~~v~--~~~~l~d~~-~~i~~ 190 (321)
T PF03178_consen 168 RDYQPRWVT--AAEFLVDED-TIIVG 190 (321)
T ss_dssp EESS-BEEE--EEEEE-SSS-EEEEE
T ss_pred ecCCCccEE--EEEEecCCc-EEEEE
Confidence 544455433 22444 555 33444
No 80
>PRK04922 tolB translocation protein TolB; Provisional
Probab=91.66 E-value=15 Score=36.50 Aligned_cols=184 Identities=13% Similarity=0.109 Sum_probs=90.2
Q ss_pred eeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceE
Q 013909 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPAT 224 (434)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~ 224 (434)
..++++|+.+++-+.+...+. ........-.+.+|++....++ ..+++.+|+.+.+-+.+..-+......+
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g--~~~~~~~SpDG~~l~~~~s~~g------~~~Iy~~d~~~g~~~~lt~~~~~~~~~~- 298 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRG--INGAPSFSPDGRRLALTLSRDG------NPEIYVMDLGSRQLTRLTNHFGIDTEPT- 298 (433)
T ss_pred cEEEEEECCCCCEEEeccCCC--CccCceECCCCCEEEEEEeCCC------CceEEEEECCCCCeEECccCCCCccceE-
Confidence 459999999988877765543 1112222223455655432221 2579999999888776653322111111
Q ss_pred EEECC-EEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEECC-EEEEEcCCCCCCCCCCCCC
Q 013909 225 QLWRG-RLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFND-RLFVVGGQEGDFMAKPGSP 302 (434)
Q Consensus 225 ~~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~ 302 (434)
..-++ +|+......+ ..++|.++ ..+.+.+.+......... .....++ .|++..+..+.
T Consensus 299 ~spDG~~l~f~sd~~g-----~~~iy~~d-----l~~g~~~~lt~~g~~~~~-~~~SpDG~~Ia~~~~~~~~-------- 359 (433)
T PRK04922 299 WAPDGKSIYFTSDRGG-----RPQIYRVA-----ASGGSAERLTFQGNYNAR-ASVSPDGKKIAMVHGSGGQ-------- 359 (433)
T ss_pred ECCCCCEEEEEECCCC-----CceEEEEE-----CCCCCeEEeecCCCCccC-EEECCCCCEEEEEECCCCc--------
Confidence 12244 4544432221 12344432 344555554322111111 1222244 45444332211
Q ss_pred ccccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCc
Q 013909 303 IFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLT 381 (434)
Q Consensus 303 ~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~ 381 (434)
..++.+| .+.+.+.+..-+.. . .. ....+++.+++....... ..++.++++...
T Consensus 360 ------------~~I~v~d~~~g~~~~Lt~~~~~-~--~p-~~spdG~~i~~~s~~~g~---------~~L~~~~~~g~~ 414 (433)
T PRK04922 360 ------------YRIAVMDLSTGSVRTLTPGSLD-E--SP-SFAPNGSMVLYATREGGR---------GVLAAVSTDGRV 414 (433)
T ss_pred ------------eeEEEEECCCCCeEECCCCCCC-C--Cc-eECCCCCEEEEEEecCCc---------eEEEEEECCCCc
Confidence 1588888 66677776533211 1 11 145567766666543222 368888886543
No 81
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=91.44 E-value=13 Score=35.27 Aligned_cols=94 Identities=10% Similarity=0.074 Sum_probs=43.5
Q ss_pred ceeeccCC-CCcEEEcCCCCCCCCceeEEEE-CC-EEEEEeccCCCCCceeeEEEEECCCCc--eEecCCCCCCCCceee
Q 013909 98 TFADLPAP-DLEWEQMPSAPVPRLDGAAIQI-KN-LFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSHL 172 (434)
Q Consensus 98 ~~~~~~~~-~~~W~~~~~~p~~R~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~r~~~ 172 (434)
.+..|+.. .++++.+...+.+..-+.++.. ++ .+|+.. .. .+.+.+||+.++. ...+..++. ....|
T Consensus 58 ~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~-~~-----~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~ 129 (330)
T PRK11028 58 RVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSAS-YN-----ANCVSVSPLDKDGIPVAPIQIIEG--LEGCH 129 (330)
T ss_pred cEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEE-cC-----CCeEEEEEECCCCCCCCceeeccC--CCccc
Confidence 45445443 4456555444433222233333 34 566653 22 1347778776431 112222221 12234
Q ss_pred EEEEe--CCEEEEEeccCCCCCCCCCceeEEEECCCC
Q 013909 173 GVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (434)
Q Consensus 173 ~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~ 207 (434)
++++. ++.+|+..- ..+.+.+||..+.
T Consensus 130 ~~~~~p~g~~l~v~~~--------~~~~v~v~d~~~~ 158 (330)
T PRK11028 130 SANIDPDNRTLWVPCL--------KEDRIRLFTLSDD 158 (330)
T ss_pred EeEeCCCCCEEEEeeC--------CCCEEEEEEECCC
Confidence 44443 346776532 1367889998763
No 82
>PRK05137 tolB translocation protein TolB; Provisional
Probab=90.73 E-value=19 Score=35.86 Aligned_cols=193 Identities=8% Similarity=0.005 Sum_probs=88.7
Q ss_pred eeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccce
Q 013909 144 HSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPA 223 (434)
Q Consensus 144 ~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~ 223 (434)
...+|+.|.....=+.+..... .-......-.+.+|+...- ... ...++.+|+.+.+.+.+...+......+
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~--~v~~p~wSpDG~~lay~s~-~~g-----~~~i~~~dl~~g~~~~l~~~~g~~~~~~ 252 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSS--LVLTPRFSPNRQEITYMSY-ANG-----RPRVYLLDLETGQRELVGNFPGMTFAPR 252 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCC--CeEeeEECCCCCEEEEEEe-cCC-----CCEEEEEECCCCcEEEeecCCCcccCcE
Confidence 4568998886544333332221 1122222223445544432 111 2689999999988887765553322222
Q ss_pred EEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCc
Q 013909 224 TQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPI 303 (434)
Q Consensus 224 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 303 (434)
...-+.+|++....++ ..++|.++ ..+..-+.+...+..... ....-+++-++|......
T Consensus 253 ~SPDG~~la~~~~~~g-----~~~Iy~~d-----~~~~~~~~Lt~~~~~~~~-~~~spDG~~i~f~s~~~g--------- 312 (435)
T PRK05137 253 FSPDGRKVVMSLSQGG-----NTDIYTMD-----LRSGTTTRLTDSPAIDTS-PSYSPDGSQIVFESDRSG--------- 312 (435)
T ss_pred ECCCCCEEEEEEecCC-----CceEEEEE-----CCCCceEEccCCCCccCc-eeEcCCCCEEEEEECCCC---------
Confidence 2222335544432221 23344332 344444444433221111 122234554444432111
Q ss_pred cccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCce
Q 013909 304 FKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTW 382 (434)
Q Consensus 304 ~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W 382 (434)
...+|.+| ...+.+.+.... ...... ....+++.+++....... ..++++|++++..
T Consensus 313 ----------~~~Iy~~d~~g~~~~~lt~~~--~~~~~~-~~SpdG~~ia~~~~~~~~---------~~i~~~d~~~~~~ 370 (435)
T PRK05137 313 ----------SPQLYVMNADGSNPRRISFGG--GRYSTP-VWSPRGDLIAFTKQGGGQ---------FSIGVMKPDGSGE 370 (435)
T ss_pred ----------CCeEEEEECCCCCeEEeecCC--CcccCe-EECCCCCEEEEEEcCCCc---------eEEEEEECCCCce
Confidence 12588888 555666654321 111111 133455555444322211 2688999877766
Q ss_pred EEec
Q 013909 383 SVIG 386 (434)
Q Consensus 383 ~~~~ 386 (434)
..+.
T Consensus 371 ~~lt 374 (435)
T PRK05137 371 RILT 374 (435)
T ss_pred Eecc
Confidence 5553
No 83
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=90.54 E-value=17 Score=34.95 Aligned_cols=81 Identities=19% Similarity=0.169 Sum_probs=43.1
Q ss_pred EEEEECCCCceEecCCCCCCCCceeeEEEE--eCCEEEEEeccCCCCCCCCCceeEEE--ECCCCceEecCCCCCCcccc
Q 013909 147 VDVYNFTDNKWVDRFDMPKDMAHSHLGVVS--DGRYIYIVSGQYGPQCRGPTSRTFVL--DSETRKWDSIPPLPSPRYSP 222 (434)
Q Consensus 147 v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~y--d~~t~~W~~~~~~p~~r~~~ 222 (434)
++.||.++.+++.+...... -...-+++ .++.||+...... ....+..| +..+.+.+.+...+......
T Consensus 17 ~~~~d~~~g~l~~~~~~~~~--~~Ps~l~~~~~~~~LY~~~e~~~-----~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p 89 (345)
T PF10282_consen 17 VFRFDEETGTLTLVQTVAEG--ENPSWLAVSPDGRRLYVVNEGSG-----DSGGVSSYRIDPDTGTLTLLNSVPSGGSSP 89 (345)
T ss_dssp EEEEETTTTEEEEEEEEEES--SSECCEEE-TTSSEEEEEETTSS-----TTTEEEEEEEETTTTEEEEEEEEEESSSCE
T ss_pred EEEEcCCCCCceEeeeecCC--CCCceEEEEeCCCEEEEEEcccc-----CCCCEEEEEECCCcceeEEeeeeccCCCCc
Confidence 66778899999876543221 11112333 5788999865321 12445555 44446787776555322222
Q ss_pred eEEEE---CCEEEEE
Q 013909 223 ATQLW---RGRLHVM 234 (434)
Q Consensus 223 ~~~~~---~~~iyv~ 234 (434)
+-+.+ +..||+.
T Consensus 90 ~~i~~~~~g~~l~va 104 (345)
T PF10282_consen 90 CHIAVDPDGRFLYVA 104 (345)
T ss_dssp EEEEECTTSSEEEEE
T ss_pred EEEEEecCCCEEEEE
Confidence 22222 4456665
No 84
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=90.36 E-value=15 Score=34.05 Aligned_cols=164 Identities=15% Similarity=0.088 Sum_probs=86.5
Q ss_pred eEecCCCCCCCCceeeEEEEeCCEEEEEeccC-------CC-------CCCCCCceeEEEECCCCceEec--CCCCCCcc
Q 013909 157 WVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQY-------GP-------QCRGPTSRTFVLDSETRKWDSI--PPLPSPRY 220 (434)
Q Consensus 157 W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~-------~~-------~~~~~~~~~~~yd~~t~~W~~~--~~~p~~r~ 220 (434)
.+.+.+.|..-.-.+.++..+++.|| |||+- +. ...+..+.+..||.++++-+.+ ..+-.++.
T Consensus 25 felvG~~P~SGGDTYNAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~~~ 103 (339)
T PF09910_consen 25 FELVGPPPTSGGDTYNAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDKTK 103 (339)
T ss_pred eeeccCCCCCCCccceeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCccc
Confidence 34556655543445566777888777 67761 11 1123457889999998873333 11222222
Q ss_pred cceE---E---EECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCC
Q 013909 221 SPAT---Q---LWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGD 294 (434)
Q Consensus 221 ~~~~---~---~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~ 294 (434)
...= . .++++|++.-+-. . ..+-+|.++ ..+..=+.+...|... .+..++..+|-+ .+..
T Consensus 104 WaGEVSdIlYdP~~D~LLlAR~DG-h---~nLGvy~ld-----r~~g~~~~L~~~ps~K---G~~~~D~a~F~i--~~~~ 169 (339)
T PF09910_consen 104 WAGEVSDILYDPYEDRLLLARADG-H---ANLGVYSLD-----RRTGKAEKLSSNPSLK---GTLVHDYACFGI--NNFH 169 (339)
T ss_pred cccchhheeeCCCcCEEEEEecCC-c---ceeeeEEEc-----ccCCceeeccCCCCcC---ceEeeeeEEEec--cccc
Confidence 1111 1 2367888874321 1 223345543 5566655555555443 445556665544 2211
Q ss_pred CCCCCCCCccccccccceeeCcEEEeC-CCCCe--EEcCC------CCCCCCccceeEEEECCEEEEE
Q 013909 295 FMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKW--KVLPP------MPKPNSHIECAWVIVNNSIIIT 353 (434)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W--~~~~~------~p~~r~~~~~~~~~~~~~i~v~ 353 (434)
. -.+.+.+|| .+.+| +..+. -+.-+.. .-.++...+++|.|
T Consensus 170 ~-----------------g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~-~G~~~s~ynR~faF 219 (339)
T PF09910_consen 170 K-----------------GVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPE-LGAMASAYNRLFAF 219 (339)
T ss_pred c-----------------CCceEEEEEccCCeEEEEecccccCCCCCceEeec-cccEEEEeeeEEEE
Confidence 1 245799999 88899 43321 1111222 22457788888876
No 85
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=89.97 E-value=21 Score=35.11 Aligned_cols=77 Identities=10% Similarity=0.195 Sum_probs=43.1
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~ 207 (434)
+++.+++...... ...++++|+.+++-..+...+. .....+..-.++.|++....++ ..+++.+|+.+.
T Consensus 200 dg~~la~~~~~~~---~~~i~v~d~~~g~~~~~~~~~~--~~~~~~~spDg~~l~~~~~~~~------~~~i~~~d~~~~ 268 (417)
T TIGR02800 200 DGQKLAYVSFESG---KPEIYVQDLATGQREKVASFPG--MNGAPAFSPDGSKLAVSLSKDG------NPDIYVMDLDGK 268 (417)
T ss_pred CCCEEEEEEcCCC---CcEEEEEECCCCCEEEeecCCC--CccceEECCCCCEEEEEECCCC------CccEEEEECCCC
Confidence 4544444443321 1459999999887766654432 1222222223445665533221 357999999988
Q ss_pred ceEecCCC
Q 013909 208 KWDSIPPL 215 (434)
Q Consensus 208 ~W~~~~~~ 215 (434)
..+.+...
T Consensus 269 ~~~~l~~~ 276 (417)
T TIGR02800 269 QLTRLTNG 276 (417)
T ss_pred CEEECCCC
Confidence 87777543
No 86
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=89.81 E-value=6.9 Score=35.73 Aligned_cols=147 Identities=13% Similarity=0.074 Sum_probs=80.7
Q ss_pred ceeeeEEEccCCcchhhhhccceeeccCCCCcEEEcCCCCCCCCc------------eeEEEECCEEEEEeccCCCCCce
Q 013909 77 QRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLD------------GAAIQIKNLFYVFAGYGSLDYVH 144 (434)
Q Consensus 77 ~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~R~~------------~~~~~~~~~iyv~GG~~~~~~~~ 144 (434)
...|-+|..+.-.- ...-...+..||..+++-..-..+|.+... .-.++-++-|+|+-.........
T Consensus 70 ~GtG~vVYngslYY-~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~i 148 (250)
T PF02191_consen 70 QGTGHVVYNGSLYY-NKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNI 148 (250)
T ss_pred ccCCeEEECCcEEE-EecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcE
Confidence 34445554443221 222344899999988754422223322211 23344466788887665443211
Q ss_pred eeEEEEECCCC----ceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecC-CCCCCc
Q 013909 145 SHVDVYNFTDN----KWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP-PLPSPR 219 (434)
Q Consensus 145 ~~v~~yd~~t~----~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~-~~p~~r 219 (434)
-+-+.||.+- +|.. ..+. +..+. +.++=|.||++-..+... ..-.+.||+.+++=..+. +++.+-
T Consensus 149 -vvskld~~tL~v~~tw~T--~~~k--~~~~n-aFmvCGvLY~~~s~~~~~----~~I~yafDt~t~~~~~~~i~f~~~~ 218 (250)
T PF02191_consen 149 -VVSKLDPETLSVEQTWNT--SYPK--RSAGN-AFMVCGVLYATDSYDTRD----TEIFYAFDTYTGKEEDVSIPFPNPY 218 (250)
T ss_pred -EEEeeCcccCceEEEEEe--ccCc--hhhcc-eeeEeeEEEEEEECCCCC----cEEEEEEECCCCceeceeeeecccc
Confidence 2556677653 5763 3443 23333 333446799987654432 356789999988755432 334444
Q ss_pred ccceEEEE---CCEEEEE
Q 013909 220 YSPATQLW---RGRLHVM 234 (434)
Q Consensus 220 ~~~~~~~~---~~~iyv~ 234 (434)
..+++..+ +.+||+.
T Consensus 219 ~~~~~l~YNP~dk~LY~w 236 (250)
T PF02191_consen 219 GNISMLSYNPRDKKLYAW 236 (250)
T ss_pred CceEeeeECCCCCeEEEE
Confidence 55666655 5789988
No 87
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=89.54 E-value=26 Score=35.58 Aligned_cols=76 Identities=21% Similarity=0.298 Sum_probs=42.7
Q ss_pred CcEEEeC-CCC--CeEEcCCC-------CCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCc--e
Q 013909 315 GDVYMLD-DEM--KWKVLPPM-------PKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLT--W 382 (434)
Q Consensus 315 ~~v~~yd-~~~--~W~~~~~~-------p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~--W 382 (434)
..++++| .+. .|+.-... ..+.. ...+++.++.||+ |..+ ..++.+|.++.+ |
T Consensus 366 G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~--~~~~~~~g~~v~~-g~~d------------G~l~ald~~tG~~lW 430 (488)
T cd00216 366 GGLAALDPKTGKVVWEKREGTIRDSWNIGFPHW--GGSLATAGNLVFA-GAAD------------GYFRAFDATTGKELW 430 (488)
T ss_pred eEEEEEeCCCCcEeeEeeCCccccccccCCccc--CcceEecCCeEEE-ECCC------------CeEEEEECCCCceee
Confidence 4588898 433 79874320 01111 1233455555554 4432 258899988876 7
Q ss_pred EEeccCCCceeee-eeEEECCEEEEE
Q 013909 383 SVIGKLPYRIKTT-LTGFWDGWLYFT 407 (434)
Q Consensus 383 ~~~~~lp~~r~~~-~~~~~~~~l~v~ 407 (434)
+. +++.+.... .....++++||.
T Consensus 431 ~~--~~~~~~~a~P~~~~~~g~~yv~ 454 (488)
T cd00216 431 KF--RTPSGIQATPMTYEVNGKQYVG 454 (488)
T ss_pred EE--ECCCCceEcCEEEEeCCEEEEE
Confidence 64 455544333 333568999987
No 88
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=89.43 E-value=5.1 Score=36.61 Aligned_cols=103 Identities=19% Similarity=0.191 Sum_probs=66.3
Q ss_pred eeeEEEE-eCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcce
Q 013909 170 SHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEH 248 (434)
Q Consensus 170 ~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 248 (434)
.-.+... .++.||.--|..+ -+.+.+||+.|.+-....++|..-.+=.++.++++||.+-=.+ ...-+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG------~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~-----~~~f~ 114 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYG------QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKE-----GTGFV 114 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTT------EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSS-----SEEEE
T ss_pred cCccEEecCCCEEEEeCCCCC------cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecC-----CeEEE
Confidence 3345555 6889999877655 3688999999999877778888888888999999999995332 22334
Q ss_pred EEEEeeccccccCceEEccCCCCCCCceeEEEECCEEEEEcCCC
Q 013909 249 WSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQE 292 (434)
Q Consensus 249 ~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~ 292 (434)
|| + ++.+.+...+-...+-+.+.-+..+++--|.+
T Consensus 115 yd-------~--~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~ 149 (264)
T PF05096_consen 115 YD-------P--NTLKKIGTFPYPGEGWGLTSDGKRLIMSDGSS 149 (264)
T ss_dssp EE-------T--TTTEEEEEEE-SSS--EEEECSSCEEEE-SSS
T ss_pred Ec-------c--ccceEEEEEecCCcceEEEcCCCEEEEECCcc
Confidence 44 3 23444444333344557777788888887743
No 89
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=89.28 E-value=27 Score=35.44 Aligned_cols=108 Identities=14% Similarity=0.097 Sum_probs=55.1
Q ss_pred cceeeccCCCC--cEEEcCCCCCCC-----CceeEEEEC-CEEEEEeccCCCCCceeeEEEEECCCCc--eEecCCCCC-
Q 013909 97 ATFADLPAPDL--EWEQMPSAPVPR-----LDGAAIQIK-NLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPK- 165 (434)
Q Consensus 97 ~~~~~~~~~~~--~W~~~~~~p~~R-----~~~~~~~~~-~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~- 165 (434)
..++.+|..+. .|+.-...+..+ .....+..+ ++||+... ...+..+|..|.+ |+.-.....
T Consensus 71 g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-------~g~v~AlD~~TG~~~W~~~~~~~~~ 143 (488)
T cd00216 71 SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-------DGRLVALDAETGKQVWKFGNNDQVP 143 (488)
T ss_pred CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-------CCeEEEEECCCCCEeeeecCCCCcC
Confidence 36777777665 686543322111 111223446 78887432 1248999998875 876432211
Q ss_pred CCCceeeEEEEeCCEEEEEeccCCCC-CCCCCceeEEEECCCCc--eEec
Q 013909 166 DMAHSHLGVVSDGRYIYIVSGQYGPQ-CRGPTSRTFVLDSETRK--WDSI 212 (434)
Q Consensus 166 ~~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~~~yd~~t~~--W~~~ 212 (434)
+......+.++.++.+|+ |...... .......++.+|.+|.+ |+.-
T Consensus 144 ~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 144 PGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred cceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEee
Confidence 000112233556676665 4322110 00123578999998765 8653
No 90
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=89.08 E-value=16 Score=32.54 Aligned_cols=64 Identities=14% Similarity=0.152 Sum_probs=32.4
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
++..+++++.+ ..+.+||..+++-... +... ...-.++... ++++++.++. ...+..||+.+
T Consensus 62 ~~~~l~~~~~~------~~i~i~~~~~~~~~~~--~~~~-~~~i~~~~~~~~~~~~~~~~~--------~~~i~~~~~~~ 124 (289)
T cd00200 62 DGTYLASGSSD------KTIRLWDLETGECVRT--LTGH-TSYVSSVAFSPDGRILSSSSR--------DKTIKVWDVET 124 (289)
T ss_pred CCCEEEEEcCC------CeEEEEEcCcccceEE--Eecc-CCcEEEEEEcCCCCEEEEecC--------CCeEEEEECCC
Confidence 44466666653 2488888887532211 1110 1112233333 3456666552 24678899875
Q ss_pred Cc
Q 013909 207 RK 208 (434)
Q Consensus 207 ~~ 208 (434)
.+
T Consensus 125 ~~ 126 (289)
T cd00200 125 GK 126 (289)
T ss_pred cE
Confidence 44
No 91
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=88.55 E-value=32 Score=35.32 Aligned_cols=98 Identities=19% Similarity=0.321 Sum_probs=56.3
Q ss_pred eeEEEECCEEEEEeccCCCCCceeeEEEEECCCCc--eEecCCCCCCC-C-----ceeeEEEEeCCEEEEEeccCCCCCC
Q 013909 122 GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDM-A-----HSHLGVVSDGRYIYIVSGQYGPQCR 193 (434)
Q Consensus 122 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~-~-----r~~~~~~~~~~~lyv~GG~~~~~~~ 193 (434)
.+-++.++.||+.... ..++++|..|.+ |+.-...+... + ....+.++.+++||+...
T Consensus 63 stPvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~------- 128 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL------- 128 (527)
T ss_pred cCCEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-------
Confidence 3445669999986432 248999998865 87643332110 0 112234667888887422
Q ss_pred CCCceeEEEECCCCc--eEecC-CCCCC-cccceEEEECCEEEEEc
Q 013909 194 GPTSRTFVLDSETRK--WDSIP-PLPSP-RYSPATQLWRGRLHVMG 235 (434)
Q Consensus 194 ~~~~~~~~yd~~t~~--W~~~~-~~p~~-r~~~~~~~~~~~iyv~G 235 (434)
...++.+|.+|.+ |+.-. ..... ....+-++.+++||+-.
T Consensus 129 --dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~ 172 (527)
T TIGR03075 129 --DARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGI 172 (527)
T ss_pred --CCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEee
Confidence 2468999998875 76542 22211 12223446788887753
No 92
>PLN00181 protein SPA1-RELATED; Provisional
Probab=88.45 E-value=41 Score=36.49 Aligned_cols=58 Identities=14% Similarity=0.097 Sum_probs=29.1
Q ss_pred CEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCC-CcccceEEE--ECCEEEEEcCCCCCCCCCCcceEEE
Q 013909 179 RYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPS-PRYSPATQL--WRGRLHVMGGSKENRHTPGLEHWSI 251 (434)
Q Consensus 179 ~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~-~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~ 251 (434)
+...+.|+.+ ..+.+||..+.+-.. .+.. ...-.+++. .++.+++.|+.++ .+.+|++
T Consensus 545 ~~~las~~~D--------g~v~lWd~~~~~~~~--~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg-----~v~iWd~ 605 (793)
T PLN00181 545 KSQVASSNFE--------GVVQVWDVARSQLVT--EMKEHEKRVWSIDYSSADPTLLASGSDDG-----SVKLWSI 605 (793)
T ss_pred CCEEEEEeCC--------CeEEEEECCCCeEEE--EecCCCCCEEEEEEcCCCCCEEEEEcCCC-----EEEEEEC
Confidence 4455555543 357788887654322 1111 111122222 2456777777643 4667764
No 93
>PRK00178 tolB translocation protein TolB; Provisional
Probab=88.35 E-value=28 Score=34.49 Aligned_cols=148 Identities=11% Similarity=0.107 Sum_probs=71.1
Q ss_pred ceeEEEECCCCceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCce
Q 013909 197 SRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHR 276 (434)
Q Consensus 197 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~ 276 (434)
..++++|+.+.+-+.+...+..-.......-+++|++..-..+ ..++|.++ ..+.+.+.+...+......
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g-----~~~Iy~~d-----~~~~~~~~lt~~~~~~~~~ 292 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG-----NPEIYVMD-----LASRQLSRVTNHPAIDTEP 292 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCC-----CceEEEEE-----CCCCCeEEcccCCCCcCCe
Confidence 5799999999887777654421111111112345554322211 12333322 4566666554433222111
Q ss_pred eEEEECC-EEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEEECCEEEEEc
Q 013909 277 ACFVFND-RLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITG 354 (434)
Q Consensus 277 ~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~G 354 (434)
....++ +|+......+ ...+|.+| .+.+++.+.... ...... ....+++.+++.
T Consensus 293 -~~spDg~~i~f~s~~~g--------------------~~~iy~~d~~~g~~~~lt~~~--~~~~~~-~~Spdg~~i~~~ 348 (430)
T PRK00178 293 -FWGKDGRTLYFTSDRGG--------------------KPQIYKVNVNGGRAERVTFVG--NYNARP-RLSADGKTLVMV 348 (430)
T ss_pred -EECCCCCEEEEEECCCC--------------------CceEEEEECCCCCEEEeecCC--CCccce-EECCCCCEEEEE
Confidence 122244 4544432221 12588888 666777664211 111111 123355444444
Q ss_pred CcCCCCCCccceeeeccEEEEECCCCceEEecc
Q 013909 355 GTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGK 387 (434)
Q Consensus 355 G~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 387 (434)
...... ..++++|+++...+.+..
T Consensus 349 ~~~~~~---------~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 349 HRQDGN---------FHVAAQDLQRGSVRILTD 372 (430)
T ss_pred EccCCc---------eEEEEEECCCCCEEEccC
Confidence 322211 258999999988887754
No 94
>PRK05137 tolB translocation protein TolB; Provisional
Probab=88.23 E-value=29 Score=34.52 Aligned_cols=64 Identities=14% Similarity=0.180 Sum_probs=39.9
Q ss_pred eeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCC
Q 013909 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP 216 (434)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p 216 (434)
..++++|+.+++.+.+...+. ........-.+.+|++....++ ..++|.+|..+..-+.+..-+
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g--~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~Lt~~~ 289 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPG--MTFAPRFSPDGRKVVMSLSQGG------NTDIYTMDLRSGTTTRLTDSP 289 (435)
T ss_pred CEEEEEECCCCcEEEeecCCC--cccCcEECCCCCEEEEEEecCC------CceEEEEECCCCceEEccCCC
Confidence 459999999998887766543 1122222223445655433222 367999999998877775433
No 95
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=88.12 E-value=5.1 Score=36.64 Aligned_cols=96 Identities=20% Similarity=0.214 Sum_probs=66.9
Q ss_pred ECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 127 IKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 127 ~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
.++.+|.--|.-+. +.+.+||+.+++=....++|. .-.+=++++++++||..-=. ....++||+.+
T Consensus 54 ~~g~LyESTG~yG~----S~l~~~d~~tg~~~~~~~l~~--~~FgEGit~~~d~l~qLTWk--------~~~~f~yd~~t 119 (264)
T PF05096_consen 54 DDGTLYESTGLYGQ----SSLRKVDLETGKVLQSVPLPP--RYFGEGITILGDKLYQLTWK--------EGTGFVYDPNT 119 (264)
T ss_dssp ETTEEEEEECSTTE----EEEEEEETTTSSEEEEEE-TT--T--EEEEEEETTEEEEEESS--------SSEEEEEETTT
T ss_pred CCCEEEEeCCCCCc----EEEEEEECCCCcEEEEEECCc--cccceeEEEECCEEEEEEec--------CCeEEEEcccc
Confidence 47899998887553 458999999998776667765 56777889999999998432 35789999976
Q ss_pred CceEecCCCCCCcccceEEEECCEEEEEcCCC
Q 013909 207 RKWDSIPPLPSPRYSPATQLWRGRLHVMGGSK 238 (434)
Q Consensus 207 ~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 238 (434)
.+.+...+.+..+-.++..+..+++--|.+
T Consensus 120 --l~~~~~~~y~~EGWGLt~dg~~Li~SDGS~ 149 (264)
T PF05096_consen 120 --LKKIGTFPYPGEGWGLTSDGKRLIMSDGSS 149 (264)
T ss_dssp --TEEEEEEE-SSS--EEEECSSCEEEE-SSS
T ss_pred --ceEEEEEecCCcceEEEcCCCEEEEECCcc
Confidence 455555555567778887788888887643
No 96
>PRK00178 tolB translocation protein TolB; Provisional
Probab=87.98 E-value=30 Score=34.32 Aligned_cols=184 Identities=13% Similarity=0.120 Sum_probs=89.5
Q ss_pred eeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceE
Q 013909 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPAT 224 (434)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~ 224 (434)
..++++|+.+++-+.+...+.. -......-.+++|++..-.++ ..+++.+|..+.+.+.+..-+..-.....
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~--~~~~~~SpDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~ 294 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGL--NGAPAWSPDGSKLAFVLSKDG------NPEIYVMDLASRQLSRVTNHPAIDTEPFW 294 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCC--cCCeEECCCCCEEEEEEccCC------CceEEEEECCCCCeEEcccCCCCcCCeEE
Confidence 3599999999988777654421 111112223445654432111 25899999999988877643321111111
Q ss_pred EEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEECC-EEEEEcCCCCCCCCCCCCCc
Q 013909 225 QLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFND-RLFVVGGQEGDFMAKPGSPI 303 (434)
Q Consensus 225 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~ 303 (434)
..-+.+|+......+ ..++|.++ ..+.+++.+........ ......++ .|+......+.
T Consensus 295 spDg~~i~f~s~~~g-----~~~iy~~d-----~~~g~~~~lt~~~~~~~-~~~~Spdg~~i~~~~~~~~~--------- 354 (430)
T PRK00178 295 GKDGRTLYFTSDRGG-----KPQIYKVN-----VNGGRAERVTFVGNYNA-RPRLSADGKTLVMVHRQDGN--------- 354 (430)
T ss_pred CCCCCEEEEEECCCC-----CceEEEEE-----CCCCCEEEeecCCCCcc-ceEECCCCCEEEEEEccCCc---------
Confidence 122345555432221 22344332 44555555432211111 11222244 44444322211
Q ss_pred cccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCC
Q 013909 304 FKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSL 380 (434)
Q Consensus 304 ~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~ 380 (434)
..++.+| .+.+.+.+...... .. .+ ...+++.+++....... ..++..+...+
T Consensus 355 -----------~~l~~~dl~tg~~~~lt~~~~~-~~--p~-~spdg~~i~~~~~~~g~---------~~l~~~~~~g~ 408 (430)
T PRK00178 355 -----------FHVAAQDLQRGSVRILTDTSLD-ES--PS-VAPNGTMLIYATRQQGR---------GVLMLVSINGR 408 (430)
T ss_pred -----------eEEEEEECCCCCEEEccCCCCC-CC--ce-ECCCCCEEEEEEecCCc---------eEEEEEECCCC
Confidence 2488898 67777777543211 11 11 44577777776543322 25777776543
No 97
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=87.78 E-value=9.9 Score=34.80 Aligned_cols=119 Identities=10% Similarity=0.139 Sum_probs=67.5
Q ss_pred eeeEEEccCCcchhhhhccceeeccCCCCcEEEcCCCCCC-CCcee--EEEECCEEEEEeccCCCCCceeeEEEEECCCC
Q 013909 79 ESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVP-RLDGA--AIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDN 155 (434)
Q Consensus 79 ~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~-R~~~~--~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 155 (434)
.|+++-.++..-..++..+.+...|+.+..=+.++. |.+ ..+.. -....+++++. ......+.+|||.+.
T Consensus 192 yGi~atpdGsvwyaslagnaiaridp~~~~aev~p~-P~~~~~gsRriwsdpig~~wit------twg~g~l~rfdPs~~ 264 (353)
T COG4257 192 YGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQ-PNALKAGSRRIWSDPIGRAWIT------TWGTGSLHRFDPSVT 264 (353)
T ss_pred cceEECCCCcEEEEeccccceEEcccccCCcceecC-CCcccccccccccCccCcEEEe------ccCCceeeEeCcccc
Confidence 445554444333334445577777777764333332 222 11111 11225667775 112345899999999
Q ss_pred ceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecC
Q 013909 156 KWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP 213 (434)
Q Consensus 156 ~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~ 213 (434)
+|.+- +||...+|-...-+-..+++++. .-..+.+.+|||++.+.+.++
T Consensus 265 sW~ey-pLPgs~arpys~rVD~~grVW~s--------ea~agai~rfdpeta~ftv~p 313 (353)
T COG4257 265 SWIEY-PLPGSKARPYSMRVDRHGRVWLS--------EADAGAIGRFDPETARFTVLP 313 (353)
T ss_pred cceee-eCCCCCCCcceeeeccCCcEEee--------ccccCceeecCcccceEEEec
Confidence 99875 34443345444334445777773 122467889999999888764
No 98
>PRK04922 tolB translocation protein TolB; Provisional
Probab=87.69 E-value=31 Score=34.28 Aligned_cols=149 Identities=10% Similarity=0.023 Sum_probs=70.6
Q ss_pred ceeEEEECCCCceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCce
Q 013909 197 SRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHR 276 (434)
Q Consensus 197 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~ 276 (434)
..++++|..+.+-+.+...+..........-+.+|++....++ ..++|..+ ..+.+-+.+...+.....
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g-----~~~Iy~~d-----~~~g~~~~lt~~~~~~~~- 296 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDG-----NPEIYVMD-----LGSRQLTRLTNHFGIDTE- 296 (433)
T ss_pred cEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCC-----CceEEEEE-----CCCCCeEECccCCCCccc-
Confidence 5799999998887777655432221111122345554432222 12333322 445544444332211111
Q ss_pred eEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEEECCEEEEEcC
Q 013909 277 ACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGG 355 (434)
Q Consensus 277 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG 355 (434)
....-+++-+++...... ...+|.+| .+.+.+.+..- .......+ ...+++.+++..
T Consensus 297 ~~~spDG~~l~f~sd~~g-------------------~~~iy~~dl~~g~~~~lt~~--g~~~~~~~-~SpDG~~Ia~~~ 354 (433)
T PRK04922 297 PTWAPDGKSIYFTSDRGG-------------------RPQIYRVAASGGSAERLTFQ--GNYNARAS-VSPDGKKIAMVH 354 (433)
T ss_pred eEECCCCCEEEEEECCCC-------------------CceEEEEECCCCCeEEeecC--CCCccCEE-ECCCCCEEEEEE
Confidence 122235554444432111 12588888 66677766421 11211222 333554444432
Q ss_pred cCCCCCCccceeeeccEEEEECCCCceEEecc
Q 013909 356 TTEKHPMTKRMILVGEVFQFHLDSLTWSVIGK 387 (434)
Q Consensus 356 ~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 387 (434)
..... ..++++|+.++..+.+..
T Consensus 355 ~~~~~---------~~I~v~d~~~g~~~~Lt~ 377 (433)
T PRK04922 355 GSGGQ---------YRIAVMDLSTGSVRTLTP 377 (433)
T ss_pred CCCCc---------eeEEEEECCCCCeEECCC
Confidence 22211 268999999988887643
No 99
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=87.68 E-value=6.3 Score=31.77 Aligned_cols=83 Identities=13% Similarity=0.270 Sum_probs=56.5
Q ss_pred EEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCC---CCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEE
Q 013909 175 VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP---LPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSI 251 (434)
Q Consensus 175 ~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 251 (434)
+.+||-||-..-... .....+..||..+.+|+.+.. .........++.++|+|-++.-..... ....++|-+
T Consensus 2 icinGvly~~a~~~~----~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~-~~~~~iWvL 76 (129)
T PF08268_consen 2 ICINGVLYWLAWSED----SDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE-PDSIDIWVL 76 (129)
T ss_pred EEECcEEEeEEEECC----CCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC-cceEEEEEe
Confidence 356888887765411 224789999999999988853 234566777889999999875443221 345777776
Q ss_pred EeeccccccCceEEc
Q 013909 252 AVKDGKALEKAWRTE 266 (434)
Q Consensus 252 ~~~~~~~~~~~W~~~ 266 (434)
+ | ....+|++.
T Consensus 77 e--D--~~k~~Wsk~ 87 (129)
T PF08268_consen 77 E--D--YEKQEWSKK 87 (129)
T ss_pred e--c--cccceEEEE
Confidence 5 3 346889874
No 100
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=87.44 E-value=31 Score=33.89 Aligned_cols=147 Identities=14% Similarity=0.094 Sum_probs=71.8
Q ss_pred ceeEEEECCCCceEecCCCCCCcccceEEEECC-EEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCc
Q 013909 197 SRTFVLDSETRKWDSIPPLPSPRYSPATQLWRG-RLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPH 275 (434)
Q Consensus 197 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~ 275 (434)
..++++|+.+.+-+.+...+......+ ..-++ +|++.....+ ..++|..+ ..+...+.+...+.....
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~-~spDg~~l~~~~~~~~-----~~~i~~~d-----~~~~~~~~l~~~~~~~~~ 282 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAPA-FSPDGSKLAVSLSKDG-----NPDIYVMD-----LDGKQLTRLTNGPGIDTE 282 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccceE-ECCCCCEEEEEECCCC-----CccEEEEE-----CCCCCEEECCCCCCCCCC
Confidence 579999999887666654433222222 22244 5655533221 12333322 344554444332211111
Q ss_pred eeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEEECCEEEEEc
Q 013909 276 RACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITG 354 (434)
Q Consensus 276 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~G 354 (434)
.....+++-+++...... ...+|.+| .+.+++.+.... ...... ....+++.+++.
T Consensus 283 -~~~s~dg~~l~~~s~~~g-------------------~~~iy~~d~~~~~~~~l~~~~--~~~~~~-~~spdg~~i~~~ 339 (417)
T TIGR02800 283 -PSWSPDGKSIAFTSDRGG-------------------SPQIYMMDADGGEVRRLTFRG--GYNASP-SWSPDGDLIAFV 339 (417)
T ss_pred -EEECCCCCEEEEEECCCC-------------------CceEEEEECCCCCEEEeecCC--CCccCe-EECCCCCEEEEE
Confidence 111224544444332211 12588888 666776664221 111111 133466666666
Q ss_pred CcCCCCCCccceeeeccEEEEECCCCceEEec
Q 013909 355 GTTEKHPMTKRMILVGEVFQFHLDSLTWSVIG 386 (434)
Q Consensus 355 G~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~ 386 (434)
...... ..++++|+.+..++.+.
T Consensus 340 ~~~~~~---------~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 340 HREGGG---------FNIAVMDLDGGGERVLT 362 (417)
T ss_pred EccCCc---------eEEEEEeCCCCCeEEcc
Confidence 543321 36899999988777664
No 101
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=86.98 E-value=14 Score=35.10 Aligned_cols=110 Identities=18% Similarity=0.192 Sum_probs=63.0
Q ss_pred ceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCC-eEEcCCCCCCCCcc
Q 013909 262 AWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMK-WKVLPPMPKPNSHI 339 (434)
Q Consensus 262 ~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~-W~~~~~~p~~r~~~ 339 (434)
+.+.+...+....-.+++.+++++.+.-|. .++.|+ ..++ +...+.+..+-.
T Consensus 78 ~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~------------------------~l~v~~l~~~~~l~~~~~~~~~~~-- 131 (321)
T PF03178_consen 78 KLKLIHSTEVKGPVTAICSFNGRLVVAVGN------------------------KLYVYDLDNSKTLLKKAFYDSPFY-- 131 (321)
T ss_dssp EEEEEEEEEESS-EEEEEEETTEEEEEETT------------------------EEEEEEEETTSSEEEEEEE-BSSS--
T ss_pred EEEEEEEEeecCcceEhhhhCCEEEEeecC------------------------EEEEEEccCcccchhhheecceEE--
Confidence 444443333333344778889997776663 366666 4444 887775544432
Q ss_pred ceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccCCCceeeeeeEEE-CCEEEEEcc
Q 013909 340 ECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKLPYRIKTTLTGFW-DGWLYFTSG 409 (434)
Q Consensus 340 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~-~~~l~v~GG 409 (434)
..++.+.++.|++---..+ -.++.|+.+..+-..++.-+.++...++..+ ++. .++++
T Consensus 132 i~sl~~~~~~I~vgD~~~s-----------v~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~ 190 (321)
T PF03178_consen 132 ITSLSVFKNYILVGDAMKS-----------VSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIVG 190 (321)
T ss_dssp EEEEEEETTEEEEEESSSS-----------EEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEE
T ss_pred EEEEeccccEEEEEEcccC-----------EEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEEE
Confidence 3455777886665332221 1466778877778888776667766666565 555 44444
No 102
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=86.12 E-value=32 Score=32.74 Aligned_cols=151 Identities=16% Similarity=0.227 Sum_probs=82.6
Q ss_pred eEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEE--EECCEEEEEcCCCCCCCCCCcce
Q 013909 172 LGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQ--LWRGRLHVMGGSKENRHTPGLEH 248 (434)
Q Consensus 172 ~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~ 248 (434)
++++.. ++.+.+.||-+ +..+.++..+..|- ..++.-...-+.+ .+++.+.+.|+..+ .+.+
T Consensus 68 Favsl~P~~~l~aTGGgD--------D~AflW~~~~ge~~--~eltgHKDSVt~~~FshdgtlLATGdmsG-----~v~v 132 (399)
T KOG0296|consen 68 FAVSLHPNNNLVATGGGD--------DLAFLWDISTGEFA--GELTGHKDSVTCCSFSHDGTLLATGDMSG-----KVLV 132 (399)
T ss_pred EEEEeCCCCceEEecCCC--------ceEEEEEccCCcce--eEecCCCCceEEEEEccCceEEEecCCCc-----cEEE
Confidence 344444 77888888843 44677888887742 2333333333333 55788888888765 3444
Q ss_pred EEEEeeccccccCceEEccCCCCCCCceeEEEE-CCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCe
Q 013909 249 WSIAVKDGKALEKAWRTEIPIPRGGPHRACFVF-NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKW 326 (434)
Q Consensus 249 ~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W 326 (434)
|... ....+|....+...-- =+..+ ...|+++|-.++. +|.|. +...-
T Consensus 133 ~~~s-----tg~~~~~~~~e~~die---Wl~WHp~a~illAG~~DGs----------------------vWmw~ip~~~~ 182 (399)
T KOG0296|consen 133 FKVS-----TGGEQWKLDQEVEDIE---WLKWHPRAHILLAGSTDGS----------------------VWMWQIPSQAL 182 (399)
T ss_pred EEcc-----cCceEEEeecccCceE---EEEecccccEEEeecCCCc----------------------EEEEECCCcce
Confidence 4432 4555665542221100 01111 3556777765554 89888 55433
Q ss_pred EEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCc
Q 013909 327 KVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLT 381 (434)
Q Consensus 327 ~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~ 381 (434)
.++ ++-+.....+.-.+.+|+-++.|-.+ ..+.++|+++.+
T Consensus 183 ~kv--~~Gh~~~ct~G~f~pdGKr~~tgy~d------------gti~~Wn~ktg~ 223 (399)
T KOG0296|consen 183 CKV--MSGHNSPCTCGEFIPDGKRILTGYDD------------GTIIVWNPKTGQ 223 (399)
T ss_pred eeE--ecCCCCCcccccccCCCceEEEEecC------------ceEEEEecCCCc
Confidence 333 22222222333366677777666543 268888998875
No 103
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=85.52 E-value=39 Score=33.28 Aligned_cols=175 Identities=11% Similarity=0.176 Sum_probs=85.8
Q ss_pred ECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCC--CCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEEC
Q 013909 127 IKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK--DMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDS 204 (434)
Q Consensus 127 ~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~--~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~ 204 (434)
.++.+++.|+.+.. +..+|..+..= ...+.. .--|++ ++.-.++.|++.|||++. +-.||.
T Consensus 121 ~d~t~l~s~sDd~v------~k~~d~s~a~v--~~~l~~htDYVR~g-~~~~~~~hivvtGsYDg~--------vrl~Dt 183 (487)
T KOG0310|consen 121 QDNTMLVSGSDDKV------VKYWDLSTAYV--QAELSGHTDYVRCG-DISPANDHIVVTGSYDGK--------VRLWDT 183 (487)
T ss_pred cCCeEEEecCCCce------EEEEEcCCcEE--EEEecCCcceeEee-ccccCCCeEEEecCCCce--------EEEEEe
Confidence 48899999875421 44455555542 222221 111322 334457889999998763 456777
Q ss_pred CCCceEecCCCCCCcccceEEEE-C-CEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCC-CCCceeEEEE
Q 013909 205 ETRKWDSIPPLPSPRYSPATQLW-R-GRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPR-GGPHRACFVF 281 (434)
Q Consensus 205 ~t~~W~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~-~~~~~~~~~~ 281 (434)
.+.+ ..+-.+.....--.++.+ + ..|...|| +.+.+||+. ...+ .+..+.. ...-.+....
T Consensus 184 R~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgG-------n~vkVWDl~------~G~q--ll~~~~~H~KtVTcL~l~ 247 (487)
T KOG0310|consen 184 RSLT-SRVVELNHGCPVESVLALPSGSLIASAGG-------NSVKVWDLT------TGGQ--LLTSMFNHNKTVTCLRLA 247 (487)
T ss_pred ccCC-ceeEEecCCCceeeEEEcCCCCEEEEcCC-------CeEEEEEec------CCce--ehhhhhcccceEEEEEee
Confidence 6663 222222221111122322 2 34444444 467788862 1111 1111110 0000011111
Q ss_pred -CCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeCCCCCeEEcCCCCCCCCccceeEEEECCEEEEEcCcCC
Q 013909 282 -NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDDEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTE 358 (434)
Q Consensus 282 -~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~ 358 (434)
++.=++-||.++. |-+|| ...|+.+..+..|-.-.+++ +..+++-.++|..++
T Consensus 248 s~~~rLlS~sLD~~----------------------VKVfd-~t~~Kvv~s~~~~~pvLsia-vs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 248 SDSTRLLSGSLDRH----------------------VKVFD-TTNYKVVHSWKYPGPVLSIA-VSPDDQTVVIGMSNG 301 (487)
T ss_pred cCCceEeecccccc----------------------eEEEE-ccceEEEEeeecccceeeEE-ecCCCceEEEecccc
Confidence 5567777887654 67776 44555554433332222332 455778888888765
No 104
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=85.35 E-value=26 Score=31.08 Aligned_cols=63 Identities=8% Similarity=0.065 Sum_probs=30.7
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
++.++++|+.+ ..+..||..+++-........ ..-..+... ++..+++++. ...+..||..+
T Consensus 20 ~~~~l~~~~~~------g~i~i~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~--------~~~i~i~~~~~ 82 (289)
T cd00200 20 DGKLLATGSGD------GTIKVWDLETGELLRTLKGHT---GPVRDVAASADGTYLASGSS--------DKTIRLWDLET 82 (289)
T ss_pred CCCEEEEeecC------cEEEEEEeeCCCcEEEEecCC---cceeEEEECCCCCEEEEEcC--------CCeEEEEEcCc
Confidence 34566666643 247777877664211111111 111122222 4445566653 24678888876
Q ss_pred C
Q 013909 207 R 207 (434)
Q Consensus 207 ~ 207 (434)
.
T Consensus 83 ~ 83 (289)
T cd00200 83 G 83 (289)
T ss_pred c
Confidence 4
No 105
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=85.20 E-value=19 Score=33.08 Aligned_cols=221 Identities=12% Similarity=0.141 Sum_probs=101.2
Q ss_pred CCCcEEEcCC---CC--CCCCceeEEEE--CCEEEEEe--ccCCCC-CceeeEEEEECC-CCceEecCCCCCC------C
Q 013909 105 PDLEWEQMPS---AP--VPRLDGAAIQI--KNLFYVFA--GYGSLD-YVHSHVDVYNFT-DNKWVDRFDMPKD------M 167 (434)
Q Consensus 105 ~~~~W~~~~~---~p--~~R~~~~~~~~--~~~iyv~G--G~~~~~-~~~~~v~~yd~~-t~~W~~~~~~~~~------~ 167 (434)
...+|..... .+ ..+....+.+. +++|+++- +..... ....-.+..... -.+|+....++.. .
T Consensus 28 ~G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~ 107 (275)
T PF13088_consen 28 GGKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSG 107 (275)
T ss_dssp CTTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEE
T ss_pred CCCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceec
Confidence 3457976433 23 12223333332 88998886 222211 111112344444 3589876543321 1
Q ss_pred CceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECC-CCceEecCCCCCC-cccc-eEEE-ECCEEEEEcCCCCCCCC
Q 013909 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSE-TRKWDSIPPLPSP-RYSP-ATQL-WRGRLHVMGGSKENRHT 243 (434)
Q Consensus 168 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~-t~~W~~~~~~p~~-r~~~-~~~~-~~~~iyv~GG~~~~~~~ 243 (434)
+-....+...++.+++. .+.... .....+..|... -.+|+.....+.. .... +.+. -+++|+++--.. ..
T Consensus 108 ~~~~~~i~~~~G~l~~~-~~~~~~--~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~-~~-- 181 (275)
T PF13088_consen 108 PGRGPPIQLPDGRLIAP-YYHESG--GSFSAFVYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTE-GN-- 181 (275)
T ss_dssp CSEEEEEEECTTEEEEE-EEEESS--CEEEEEEEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEEC-SS--
T ss_pred cceeeeeEecCCCEEEE-Eeeccc--cCcceEEEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEcc-CC--
Confidence 11222345568888887 221111 112334444443 4569888766432 3322 3332 367888885432 11
Q ss_pred CCcceEEEEeeccccccCceEEcc--CCCCCCCceeEEEE-CCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEe
Q 013909 244 PGLEHWSIAVKDGKALEKAWRTEI--PIPRGGPHRACFVF-NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYML 320 (434)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~W~~~~--~~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y 320 (434)
. ..+..... ....+|+... .+|.......++.. +++++++....... ..+.-....
T Consensus 182 ~--~~~~~~S~---D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r----------------~~l~l~~S~ 240 (275)
T PF13088_consen 182 D--DIYISRST---DGGRTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNNPDGR----------------SNLSLYVSE 240 (275)
T ss_dssp T--EEEEEEES---STTSS-EEEEEEECSSCCEEEEEEECTTSEEEEEEECSSTS----------------EEEEEEEEC
T ss_pred C--cEEEEEEC---CCCCcCCCceecccCcccCCceEEEcCCCCEEEEEECCCCC----------------CceEEEEEe
Confidence 0 22222211 2466899865 34544443333332 67888887732111 112222344
Q ss_pred CCCCCeEEcCCCCCC---CCccceeEEEECCEEEE
Q 013909 321 DDEMKWKVLPPMPKP---NSHIECAWVIVNNSIII 352 (434)
Q Consensus 321 d~~~~W~~~~~~p~~---r~~~~~~~~~~~~~i~v 352 (434)
|...+|+....+... .......+..-+++|+|
T Consensus 241 D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 241 DGGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp TTCEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred CCCCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 466799876443322 23333222334578886
No 106
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=84.96 E-value=22 Score=36.51 Aligned_cols=121 Identities=15% Similarity=0.195 Sum_probs=63.5
Q ss_pred eEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCC--------CceeEEEECCEEEEEcCCCCC
Q 013909 223 ATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGG--------PHRACFVFNDRLFVVGGQEGD 294 (434)
Q Consensus 223 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~--------~~~~~~~~~~~iyv~GG~~~~ 294 (434)
+-++.++.||+..... .+..+|.. +-...|+.....+... ...+.++.+++||+... ++
T Consensus 64 tPvv~~g~vyv~s~~g------~v~AlDa~-----TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-dg- 130 (527)
T TIGR03075 64 QPLVVDGVMYVTTSYS------RVYALDAK-----TGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-DA- 130 (527)
T ss_pred CCEEECCEEEEECCCC------cEEEEECC-----CCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-CC-
Confidence 3456789999975421 23333321 3445687644332111 11234667888886432 22
Q ss_pred CCCCCCCCccccccccceeeCcEEEeC-CCC--CeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeecc
Q 013909 295 FMAKPGSPIFKCSRRHEVVYGDVYMLD-DEM--KWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGE 371 (434)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~--~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~ 371 (434)
.++++| .+. .|+.-..-+........+-++.+++||+-....+.. ....
T Consensus 131 ---------------------~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~-------~~G~ 182 (527)
T TIGR03075 131 ---------------------RLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFG-------VRGY 182 (527)
T ss_pred ---------------------EEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccC-------CCcE
Confidence 389999 443 787643211111222334467788877743221111 1236
Q ss_pred EEEEECCCCc--eEE
Q 013909 372 VFQFHLDSLT--WSV 384 (434)
Q Consensus 372 v~~yd~~~~~--W~~ 384 (434)
+..||.++.+ |+.
T Consensus 183 v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 183 VTAYDAKTGKLVWRR 197 (527)
T ss_pred EEEEECCCCceeEec
Confidence 8889988866 764
No 107
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=84.46 E-value=32 Score=31.40 Aligned_cols=62 Identities=23% Similarity=0.342 Sum_probs=34.1
Q ss_pred CEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEE--eCCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS--DGRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 129 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
..+|+.++.+ +.+.+||..+.+....-+... .+ ..+++ .++.+|+.++. ...+..||+.+
T Consensus 43 ~~l~~~~~~~------~~v~~~d~~~~~~~~~~~~~~-~~---~~~~~~~~g~~l~~~~~~--------~~~l~~~d~~~ 104 (300)
T TIGR03866 43 KLLYVCASDS------DTIQVIDLATGEVIGTLPSGP-DP---ELFALHPNGKILYIANED--------DNLVTVIDIET 104 (300)
T ss_pred CEEEEEECCC------CeEEEEECCCCcEEEeccCCC-Cc---cEEEECCCCCEEEEEcCC--------CCeEEEEECCC
Confidence 3567776532 348889999877643211111 11 12233 24557666431 24688899987
Q ss_pred Cc
Q 013909 207 RK 208 (434)
Q Consensus 207 ~~ 208 (434)
.+
T Consensus 105 ~~ 106 (300)
T TIGR03866 105 RK 106 (300)
T ss_pred Ce
Confidence 54
No 108
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=84.03 E-value=43 Score=32.46 Aligned_cols=93 Identities=17% Similarity=0.156 Sum_probs=53.1
Q ss_pred EEEECCEEEEEeccCCCCCceeeEEEEECCCCc--eEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEE
Q 013909 124 AIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFV 201 (434)
Q Consensus 124 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~ 201 (434)
.+..++++|+.. .++ .++.+|+.+.+ |+....... ..........+++||+-.. + ..+++
T Consensus 64 ~~~~dg~v~~~~-~~G------~i~A~d~~~g~~~W~~~~~~~~--~~~~~~~~~~~G~i~~g~~-~--------g~~y~ 125 (370)
T COG1520 64 PADGDGTVYVGT-RDG------NIFALNPDTGLVKWSYPLLGAV--AQLSGPILGSDGKIYVGSW-D--------GKLYA 125 (370)
T ss_pred cEeeCCeEEEec-CCC------cEEEEeCCCCcEEecccCcCcc--eeccCceEEeCCeEEEecc-c--------ceEEE
Confidence 366688999971 111 59999999987 975432100 1111122333788776432 2 26899
Q ss_pred EECCC--CceEecCCCCCCcccceEEEECCEEEEEc
Q 013909 202 LDSET--RKWDSIPPLPSPRYSPATQLWRGRLHVMG 235 (434)
Q Consensus 202 yd~~t--~~W~~~~~~p~~r~~~~~~~~~~~iyv~G 235 (434)
||+.+ ..|+.-.+.. ++..-..+..++.+|+..
T Consensus 126 ld~~~G~~~W~~~~~~~-~~~~~~~v~~~~~v~~~s 160 (370)
T COG1520 126 LDASTGTLVWSRNVGGS-PYYASPPVVGDGTVYVGT 160 (370)
T ss_pred EECCCCcEEEEEecCCC-eEEecCcEEcCcEEEEec
Confidence 99954 4587654442 444444555566777663
No 109
>PRK04792 tolB translocation protein TolB; Provisional
Probab=83.66 E-value=51 Score=33.03 Aligned_cols=192 Identities=13% Similarity=0.095 Sum_probs=91.6
Q ss_pred eeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceE
Q 013909 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPAT 224 (434)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~ 224 (434)
..++..|.....-..+...+. +-......-.+.+|+..- ... ....++.+|+.+.+-+.+...+......+.
T Consensus 198 ~~l~i~d~dG~~~~~l~~~~~--~~~~p~wSPDG~~La~~s-~~~-----g~~~L~~~dl~tg~~~~lt~~~g~~~~~~w 269 (448)
T PRK04792 198 YQLMIADYDGYNEQMLLRSPE--PLMSPAWSPDGRKLAYVS-FEN-----RKAEIFVQDIYTQVREKVTSFPGINGAPRF 269 (448)
T ss_pred eEEEEEeCCCCCceEeecCCC--cccCceECCCCCEEEEEE-ecC-----CCcEEEEEECCCCCeEEecCCCCCcCCeeE
Confidence 457878876654444433322 111222222344454432 111 136799999998877766655432222222
Q ss_pred EEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCcc
Q 013909 225 QLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIF 304 (434)
Q Consensus 225 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 304 (434)
..-+.+|++....++ ..++|.++ ..+.+.+.+......... .....+++.+++......
T Consensus 270 SPDG~~La~~~~~~g-----~~~Iy~~d-----l~tg~~~~lt~~~~~~~~-p~wSpDG~~I~f~s~~~g---------- 328 (448)
T PRK04792 270 SPDGKKLALVLSKDG-----QPEIYVVD-----IATKALTRITRHRAIDTE-PSWHPDGKSLIFTSERGG---------- 328 (448)
T ss_pred CCCCCEEEEEEeCCC-----CeEEEEEE-----CCCCCeEECccCCCCccc-eEECCCCCEEEEEECCCC----------
Confidence 222345655533221 12334332 456666555442211111 122235544444332211
Q ss_pred ccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceE
Q 013909 305 KCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWS 383 (434)
Q Consensus 305 ~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 383 (434)
...+|.+| .+.+++.+..- ....... ....+++.+++.+..... ..++++|++++..+
T Consensus 329 ---------~~~Iy~~dl~~g~~~~Lt~~--g~~~~~~-~~SpDG~~l~~~~~~~g~---------~~I~~~dl~~g~~~ 387 (448)
T PRK04792 329 ---------KPQIYRVNLASGKVSRLTFE--GEQNLGG-SITPDGRSMIMVNRTNGK---------FNIARQDLETGAMQ 387 (448)
T ss_pred ---------CceEEEEECCCCCEEEEecC--CCCCcCe-eECCCCCEEEEEEecCCc---------eEEEEEECCCCCeE
Confidence 13589998 67778776421 1111111 134455555554433221 26899999998887
Q ss_pred Eec
Q 013909 384 VIG 386 (434)
Q Consensus 384 ~~~ 386 (434)
.+.
T Consensus 388 ~lt 390 (448)
T PRK04792 388 VLT 390 (448)
T ss_pred Ecc
Confidence 764
No 110
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=83.55 E-value=43 Score=32.13 Aligned_cols=99 Identities=9% Similarity=0.000 Sum_probs=50.1
Q ss_pred ceeeccCCCCcEEEcCCCCCCCCceeEEE--ECCEEEEEeccC-CCCCceeeEEEEECCCCceEecCCCCCCCCceeeEE
Q 013909 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQ--IKNLFYVFAGYG-SLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGV 174 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R~~~~~~~--~~~~iyv~GG~~-~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~ 174 (434)
..+.+|..+.+++.+......-.-.-++. -++.||+..... ....+ ..+..+..+.+.+.+...+.....-+| +
T Consensus 16 ~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v--~~~~i~~~~g~L~~~~~~~~~g~~p~~-i 92 (345)
T PF10282_consen 16 YVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGV--SSYRIDPDTGTLTLLNSVPSGGSSPCH-I 92 (345)
T ss_dssp EEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEE--EEEEEETTTTEEEEEEEEEESSSCEEE-E
T ss_pred EEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCE--EEEEECCCcceeEEeeeeccCCCCcEE-E
Confidence 45566778888876654322221122222 256788886653 22211 244555555688777555421122233 3
Q ss_pred EE--eCCEEEEEeccCCCCCCCCCceeEEEECCCC
Q 013909 175 VS--DGRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (434)
Q Consensus 175 ~~--~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~ 207 (434)
++ .+..||+.- +. ...+..|+...+
T Consensus 93 ~~~~~g~~l~van-y~-------~g~v~v~~l~~~ 119 (345)
T PF10282_consen 93 AVDPDGRFLYVAN-YG-------GGSVSVFPLDDD 119 (345)
T ss_dssp EECTTSSEEEEEE-TT-------TTEEEEEEECTT
T ss_pred EEecCCCEEEEEE-cc-------CCeEEEEEccCC
Confidence 33 345666652 11 245677777653
No 111
>PLN00181 protein SPA1-RELATED; Provisional
Probab=82.93 E-value=75 Score=34.47 Aligned_cols=63 Identities=6% Similarity=0.071 Sum_probs=32.9
Q ss_pred CEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe--CCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 129 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
+..++.|+.++ .+.+||..+++-.. .+..- ...-.+++.. ++.+++.||.+ ..+..||..+
T Consensus 545 ~~~las~~~Dg------~v~lWd~~~~~~~~--~~~~H-~~~V~~l~~~p~~~~~L~Sgs~D--------g~v~iWd~~~ 607 (793)
T PLN00181 545 KSQVASSNFEG------VVQVWDVARSQLVT--EMKEH-EKRVWSIDYSSADPTLLASGSDD--------GSVKLWSINQ 607 (793)
T ss_pred CCEEEEEeCCC------eEEEEECCCCeEEE--EecCC-CCCEEEEEEcCCCCCEEEEEcCC--------CEEEEEECCC
Confidence 44555555442 37778887765322 11110 1112333432 56677777743 3577788765
Q ss_pred Cc
Q 013909 207 RK 208 (434)
Q Consensus 207 ~~ 208 (434)
.+
T Consensus 608 ~~ 609 (793)
T PLN00181 608 GV 609 (793)
T ss_pred Cc
Confidence 43
No 112
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=82.80 E-value=33 Score=32.41 Aligned_cols=199 Identities=16% Similarity=0.268 Sum_probs=88.2
Q ss_pred eEEEEeCCEEEEEeccC--CCCCCCCCceeEEEEC-CCCceEecCC---C-----CCCcccceEEEECCEEEEEcCCCCC
Q 013909 172 LGVVSDGRYIYIVSGQY--GPQCRGPTSRTFVLDS-ETRKWDSIPP---L-----PSPRYSPATQLWRGRLHVMGGSKEN 240 (434)
Q Consensus 172 ~~~~~~~~~lyv~GG~~--~~~~~~~~~~~~~yd~-~t~~W~~~~~---~-----p~~r~~~~~~~~~~~iyv~GG~~~~ 240 (434)
.+++-+++.|+.|.... ..........+..|-. ...+|+.... . ......+++++.+++||++-|....
T Consensus 2 PSLV~vgGvv~AvAEa~~~~~~~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkgn~IymLvG~y~~ 81 (310)
T PF13859_consen 2 PSLVEVGGVVFAVAEAQCKKSNDSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKGNKIYMLVGSYSR 81 (310)
T ss_dssp EEEEEETTEEEEEEEEESS-S-SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEEEETTEEEEEEEEESS
T ss_pred CCEEEECCEEEEEEEEEEccCCCCCceeEEEeEeeccccccccceeeecccccccccccceeeeeecceeEEEEEEEEec
Confidence 35677899888886432 1111122333444543 4457866421 1 1113456777889999988665432
Q ss_pred CCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCcccccccc-cee-eCcEE
Q 013909 241 RHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRH-EVV-YGDVY 318 (434)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~-~~~-~~~v~ 318 (434)
.. ....|++.+..-+....+|....+++....... +-++-||-++--+ .+....++.+... +.. .-.+.
T Consensus 82 ~~--~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~~------~~figgGGSGV~m-~dGTLVFPv~a~~~~~~~~~SlI 152 (310)
T PF13859_consen 82 SA--GADDWGLLLVKSTDGGIKWGDTKSLPSTSFQSW------KQFIGGGGSGVVM-EDGTLVFPVQATKKNGDGTVSLI 152 (310)
T ss_dssp ----SSTTEEEEEEEEESSSSEE---EE-GGGS-EEE------EEEEE-SEE-EE--TTS-EEEEEEEEETT---EEEEE
T ss_pred cc--cccccceeeeeccCCcceeeecccCCchhcccc------ceeecCCCCceEE-cCCCEEEEEeeeccCccceEEEE
Confidence 21 334666665553344557998776654332100 0133333111100 0011112211110 001 12345
Q ss_pred EeC--CCCCeEEcCCCCCCCCccceeEEEE-CCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEE-eccCC
Q 013909 319 MLD--DEMKWKVLPPMPKPNSHIECAWVIV-NNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSV-IGKLP 389 (434)
Q Consensus 319 ~yd--~~~~W~~~~~~p~~r~~~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~-~~~lp 389 (434)
+|. ....|+.-..++..-+. ..+++-- +++|+++.-++... ..||.=.-...+|++ ++.++
T Consensus 153 iYS~d~g~~W~lskg~s~~gC~-~psv~EWe~gkLlM~~~c~~g~---------rrVYeS~DmG~tWtea~gtls 217 (310)
T PF13859_consen 153 IYSTDDGKTWKLSKGMSPAGCS-DPSVVEWEDGKLLMMTACDDGR---------RRVYESGDMGTTWTEALGTLS 217 (310)
T ss_dssp EEESSTTSS-EE-S----TT-E-EEEEEEE-TTEEEEEEE-TTS------------EEEESSTTSS-EE-TTTTT
T ss_pred EEECCCccceEeccccCCCCcc-eEEEEeccCCeeEEEEecccce---------EEEEEEcccceehhhccCccc
Confidence 554 46699987666654444 3455666 88999998766532 246655566788998 44554
No 113
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=82.74 E-value=16 Score=29.28 Aligned_cols=83 Identities=14% Similarity=0.113 Sum_probs=53.9
Q ss_pred EECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCC-CCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEE-E
Q 013909 126 QIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDM-PKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVL-D 203 (434)
Q Consensus 126 ~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~-~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~y-d 203 (434)
.++|-+|-..-.. ....+.+-.||..+.+|+.+... ..........++.++|+|-++.-..... ...-++|+. |
T Consensus 3 cinGvly~~a~~~--~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~--~~~~~iWvLeD 78 (129)
T PF08268_consen 3 CINGVLYWLAWSE--DSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE--PDSIDIWVLED 78 (129)
T ss_pred EECcEEEeEEEEC--CCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC--cceEEEEEeec
Confidence 4577777776651 11235589999999999887442 1122456677788899999875433221 113577777 5
Q ss_pred CCCCceEec
Q 013909 204 SETRKWDSI 212 (434)
Q Consensus 204 ~~t~~W~~~ 212 (434)
..+.+|.+.
T Consensus 79 ~~k~~Wsk~ 87 (129)
T PF08268_consen 79 YEKQEWSKK 87 (129)
T ss_pred cccceEEEE
Confidence 667889876
No 114
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=81.93 E-value=46 Score=31.33 Aligned_cols=245 Identities=12% Similarity=0.131 Sum_probs=101.9
Q ss_pred ceeeccCCCCcEEEcCCC-CCC-CCc-eeEEEECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeE-
Q 013909 98 TFADLPAPDLEWEQMPSA-PVP-RLD-GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLG- 173 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~-p~~-R~~-~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~- 173 (434)
.+..-.-.-.+|+.+..- +.+ ... .++...++..||+|-.. -+..-.-.-.+|++++- +.+.+...+.
T Consensus 38 ~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g-------~ll~T~DgG~tW~~v~l-~~~lpgs~~~i 109 (302)
T PF14870_consen 38 TILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPG-------LLLHTTDGGKTWERVPL-SSKLPGSPFGI 109 (302)
T ss_dssp EEEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEETT-------EEEEESSTTSS-EE-----TT-SS-EEEE
T ss_pred EEEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCCc-------eEEEecCCCCCcEEeec-CCCCCCCeeEE
Confidence 344444455699887642 222 223 33444578899887421 13333445568999852 1111223333
Q ss_pred EEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEE-EECCEEEEEcCCCCCCCCCCcceEEEE
Q 013909 174 VVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQ-LWRGRLHVMGGSKENRHTPGLEHWSIA 252 (434)
Q Consensus 174 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~ 252 (434)
.+.-++.++++|.. ..+++=.-.-.+|+.+..-...- -..+. .-++++++++-. +.- ...++
T Consensus 110 ~~l~~~~~~l~~~~---------G~iy~T~DgG~tW~~~~~~~~gs-~~~~~r~~dG~~vavs~~-G~~----~~s~~-- 172 (302)
T PF14870_consen 110 TALGDGSAELAGDR---------GAIYRTTDGGKTWQAVVSETSGS-INDITRSSDGRYVAVSSR-GNF----YSSWD-- 172 (302)
T ss_dssp EEEETTEEEEEETT-----------EEEESSTTSSEEEEE-S-----EEEEEE-TTS-EEEEETT-SSE----EEEE---
T ss_pred EEcCCCcEEEEcCC---------CcEEEeCCCCCCeeEcccCCcce-eEeEEECCCCcEEEEECc-ccE----EEEec--
Confidence 34456777777642 23444444556898874322211 11122 335565556532 211 11222
Q ss_pred eeccccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC---CCCCeEEc
Q 013909 253 VKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD---DEMKWKVL 329 (434)
Q Consensus 253 ~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd---~~~~W~~~ 329 (434)
+....|+.....-..+-......-++.++++. ..+. +..-| ...+|.+.
T Consensus 173 -----~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~----------------------~~~s~~~~~~~~w~~~ 224 (302)
T PF14870_consen 173 -----PGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQ----------------------IQFSDDPDDGETWSEP 224 (302)
T ss_dssp -----TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTE----------------------EEEEE-TTEEEEE---
T ss_pred -----CCCccceEEccCccceehhceecCCCCEEEEe-CCcE----------------------EEEccCCCCccccccc
Confidence 55667887654433333323334577888765 2221 33222 23478873
Q ss_pred CCCCCCCCccc-eeEEE-ECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEecc-CCCceeeeeeEE-ECCEEE
Q 013909 330 PPMPKPNSHIE-CAWVI-VNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGK-LPYRIKTTLTGF-WDGWLY 405 (434)
Q Consensus 330 ~~~p~~r~~~~-~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~-lp~~r~~~~~~~-~~~~l~ 405 (434)
. .|......+ ..++. .++.+++.||.. .+++=.-..++|++... .+.+-....++. -.++-+
T Consensus 225 ~-~~~~~~~~~~ld~a~~~~~~~wa~gg~G-------------~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf 290 (302)
T PF14870_consen 225 I-IPIKTNGYGILDLAYRPPNEIWAVGGSG-------------TLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGF 290 (302)
T ss_dssp B--TTSS--S-EEEEEESSSS-EEEEESTT--------------EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEE
T ss_pred c-CCcccCceeeEEEEecCCCCEEEEeCCc-------------cEEEeCCCCccceECccccCCCCceEEEEEcCCCceE
Confidence 2 233223222 22233 367899998853 35554556788999754 233333333333 456999
Q ss_pred EEcc
Q 013909 406 FTSG 409 (434)
Q Consensus 406 v~GG 409 (434)
++|-
T Consensus 291 ~lG~ 294 (302)
T PF14870_consen 291 VLGQ 294 (302)
T ss_dssp EE-S
T ss_pred EECC
Confidence 9885
No 115
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=81.70 E-value=53 Score=31.83 Aligned_cols=118 Identities=15% Similarity=0.189 Sum_probs=64.8
Q ss_pred ceeeccCCCCc--EEEcCCCCCCCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCCC--ceEecCCCCCCCCceeeE
Q 013909 98 TFADLPAPDLE--WEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDN--KWVDRFDMPKDMAHSHLG 173 (434)
Q Consensus 98 ~~~~~~~~~~~--W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~r~~~~ 173 (434)
.+..+|+.+.+ |......-..........-+++||+-.. ++ .+++||..+. .|+.-.+. . ++..-.
T Consensus 79 ~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~-~g------~~y~ld~~~G~~~W~~~~~~--~-~~~~~~ 148 (370)
T COG1520 79 NIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSW-DG------KLYALDASTGTLVWSRNVGG--S-PYYASP 148 (370)
T ss_pred cEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecc-cc------eEEEEECCCCcEEEEEecCC--C-eEEecC
Confidence 67888888875 8553322011112222223778766433 22 5899999655 48764433 1 344445
Q ss_pred EEEeCCEEEEEeccCCCCCCCCCceeEEEECCCC--ceEecCCC-CCCcccceEEEECCEEEEE
Q 013909 174 VVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR--KWDSIPPL-PSPRYSPATQLWRGRLHVM 234 (434)
Q Consensus 174 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~--~W~~~~~~-p~~r~~~~~~~~~~~iyv~ 234 (434)
.++.++.+|+.- ....++.+|..+. .|+.-.+. ...+.....+..++.+|+-
T Consensus 149 ~v~~~~~v~~~s---------~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~ 203 (370)
T COG1520 149 PVVGDGTVYVGT---------DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVG 203 (370)
T ss_pred cEEcCcEEEEec---------CCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEe
Confidence 566677777642 1356788888755 48754333 2233333333566666666
No 116
>PRK02889 tolB translocation protein TolB; Provisional
Probab=81.39 E-value=60 Score=32.24 Aligned_cols=191 Identities=9% Similarity=0.041 Sum_probs=87.1
Q ss_pred eeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceE
Q 013909 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPAT 224 (434)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~ 224 (434)
..+|..|.....-..+...+. .-...+..-.+++|+.. ..... ...++.+|+.+.+=+.+...+.... ...
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~--~v~~p~wSPDG~~la~~-s~~~~-----~~~I~~~dl~~g~~~~l~~~~g~~~-~~~ 246 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPE--PIISPAWSPDGTKLAYV-SFESK-----KPVVYVHDLATGRRRVVANFKGSNS-APA 246 (427)
T ss_pred cEEEEECCCCCCceEeccCCC--CcccceEcCCCCEEEEE-EccCC-----CcEEEEEECCCCCEEEeecCCCCcc-ceE
Confidence 458888886655454433222 11222222234455443 22111 2569999998876555554432111 112
Q ss_pred EEECC-EEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCc
Q 013909 225 QLWRG-RLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPI 303 (434)
Q Consensus 225 ~~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 303 (434)
..-++ +|++....++ ..++|.++ ..+...+.+......... ....-+++-++|......
T Consensus 247 ~SPDG~~la~~~~~~g-----~~~Iy~~d-----~~~~~~~~lt~~~~~~~~-~~wSpDG~~l~f~s~~~g--------- 306 (427)
T PRK02889 247 WSPDGRTLAVALSRDG-----NSQIYTVN-----ADGSGLRRLTQSSGIDTE-PFFSPDGRSIYFTSDRGG--------- 306 (427)
T ss_pred ECCCCCEEEEEEccCC-----CceEEEEE-----CCCCCcEECCCCCCCCcC-eEEcCCCCEEEEEecCCC---------
Confidence 22234 5554433222 24455443 334444444332211111 122335554444332211
Q ss_pred cccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCce
Q 013909 304 FKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTW 382 (434)
Q Consensus 304 ~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W 382 (434)
...+|.+| .+...+.+... .......+ ...+++.+++....... ..++++|+.+.+.
T Consensus 307 ----------~~~Iy~~~~~~g~~~~lt~~--g~~~~~~~-~SpDG~~Ia~~s~~~g~---------~~I~v~d~~~g~~ 364 (427)
T PRK02889 307 ----------APQIYRMPASGGAAQRVTFT--GSYNTSPR-ISPDGKLLAYISRVGGA---------FKLYVQDLATGQV 364 (427)
T ss_pred ----------CcEEEEEECCCCceEEEecC--CCCcCceE-ECCCCCEEEEEEccCCc---------EEEEEEECCCCCe
Confidence 12588887 55566655321 11111221 33455555454332211 2689999998887
Q ss_pred EEec
Q 013909 383 SVIG 386 (434)
Q Consensus 383 ~~~~ 386 (434)
+.+.
T Consensus 365 ~~lt 368 (427)
T PRK02889 365 TALT 368 (427)
T ss_pred EEcc
Confidence 7664
No 117
>PRK03629 tolB translocation protein TolB; Provisional
Probab=80.51 E-value=64 Score=32.06 Aligned_cols=205 Identities=10% Similarity=0.043 Sum_probs=93.0
Q ss_pred EEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceE
Q 013909 131 FYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWD 210 (434)
Q Consensus 131 iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~ 210 (434)
+|+.-..++ ....++|+.|.....=..+...+. .-......-.+.+|.... ... ....++.+|..+.+-+
T Consensus 167 ayv~~~~~~--~~~~~l~~~d~dg~~~~~lt~~~~--~~~~p~wSPDG~~la~~s-~~~-----g~~~i~i~dl~~G~~~ 236 (429)
T PRK03629 167 AYVVQTNGG--QFPYELRVSDYDGYNQFVVHRSPQ--PLMSPAWSPDGSKLAYVT-FES-----GRSALVIQTLANGAVR 236 (429)
T ss_pred EEEEeeCCC--CcceeEEEEcCCCCCCEEeecCCC--ceeeeEEcCCCCEEEEEE-ecC-----CCcEEEEEECCCCCeE
Confidence 455543222 224568998876543233322221 112222222344444332 111 1357899999888777
Q ss_pred ecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEECCEEEEEcC
Q 013909 211 SIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGG 290 (434)
Q Consensus 211 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG 290 (434)
.+...+..-.......-+.+|++.....+. ..+..++ ..+.+.+.+...+..... ....-+++.+++..
T Consensus 237 ~l~~~~~~~~~~~~SPDG~~La~~~~~~g~---~~I~~~d-------~~tg~~~~lt~~~~~~~~-~~wSPDG~~I~f~s 305 (429)
T PRK03629 237 QVASFPRHNGAPAFSPDGSKLAFALSKTGS---LNLYVMD-------LASGQIRQVTDGRSNNTE-PTWFPDSQNLAYTS 305 (429)
T ss_pred EccCCCCCcCCeEECCCCCEEEEEEcCCCC---cEEEEEE-------CCCCCEEEccCCCCCcCc-eEECCCCCEEEEEe
Confidence 666554322221111223355554322211 1222333 445555554433221111 12223555444443
Q ss_pred CCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeee
Q 013909 291 QEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILV 369 (434)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~ 369 (434)
.... ...+|.+| .+.+-+++..... .... .....+++.+++.+.....
T Consensus 306 ~~~g-------------------~~~Iy~~d~~~g~~~~lt~~~~--~~~~-~~~SpDG~~Ia~~~~~~g~--------- 354 (429)
T PRK03629 306 DQAG-------------------RPQVYKVNINGGAPQRITWEGS--QNQD-ADVSSDGKFMVMVSSNGGQ--------- 354 (429)
T ss_pred CCCC-------------------CceEEEEECCCCCeEEeecCCC--CccC-EEECCCCCEEEEEEccCCC---------
Confidence 2211 12588888 5555555532111 1111 1134456555554433222
Q ss_pred ccEEEEECCCCceEEecc
Q 013909 370 GEVFQFHLDSLTWSVIGK 387 (434)
Q Consensus 370 ~~v~~yd~~~~~W~~~~~ 387 (434)
..++++|++++.++.+..
T Consensus 355 ~~I~~~dl~~g~~~~Lt~ 372 (429)
T PRK03629 355 QHIAKQDLATGGVQVLTD 372 (429)
T ss_pred ceEEEEECCCCCeEEeCC
Confidence 268999999999888753
No 118
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=79.22 E-value=52 Score=31.95 Aligned_cols=106 Identities=9% Similarity=0.138 Sum_probs=57.4
Q ss_pred cCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeCCCCCeEEcCC-----CCC
Q 013909 260 EKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDDEMKWKVLPP-----MPK 334 (434)
Q Consensus 260 ~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~W~~~~~-----~p~ 334 (434)
.+.|+.+........ -++.++|++|++.- ..+++..|..-+-+++.+ +..
T Consensus 189 ~~~Wt~l~~~~~~~~--DIi~~kGkfYAvD~-----------------------~G~l~~i~~~l~i~~v~~~i~~~~~~ 243 (373)
T PLN03215 189 GNVLKALKQMGYHFS--DIIVHKGQTYALDS-----------------------IGIVYWINSDLEFSRFGTSLDENITD 243 (373)
T ss_pred CCeeeEccCCCceee--EEEEECCEEEEEcC-----------------------CCeEEEEecCCceeeecceecccccC
Confidence 489999864332222 78889999999932 123666662212222221 111
Q ss_pred CCCccceeEEEECCEEEEEcCcCCCCCCc-------cceeeeccEEEEECCCCceEEeccCCC
Q 013909 335 PNSHIECAWVIVNNSIIITGGTTEKHPMT-------KRMILVGEVFQFHLDSLTWSVIGKLPY 390 (434)
Q Consensus 335 ~r~~~~~~~~~~~~~i~v~GG~~~~~~~~-------~~~~~~~~v~~yd~~~~~W~~~~~lp~ 390 (434)
.......-.+...|+++++.......... ......=.|+..|.+..+|.++..|..
T Consensus 244 g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd 306 (373)
T PLN03215 244 GCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGD 306 (373)
T ss_pred CcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCC
Confidence 11111223466788999998753211000 000011256777888999999987754
No 119
>PRK02889 tolB translocation protein TolB; Provisional
Probab=79.20 E-value=70 Score=31.73 Aligned_cols=62 Identities=13% Similarity=0.191 Sum_probs=35.5
Q ss_pred eeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCC
Q 013909 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP 214 (434)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~ 214 (434)
..++++|+.+++=..+...+. ........-.+++|++....++ ..++|.+|..+...+++..
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g--~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~lt~ 281 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKG--SNSAPAWSPDGRTLAVALSRDG------NSQIYTVNADGSGLRRLTQ 281 (427)
T ss_pred cEEEEEECCCCCEEEeecCCC--CccceEECCCCCEEEEEEccCC------CceEEEEECCCCCcEECCC
Confidence 359999999887655554432 1111111223445655433222 3679999998777666643
No 120
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=79.00 E-value=59 Score=30.74 Aligned_cols=133 Identities=13% Similarity=0.071 Sum_probs=59.0
Q ss_pred ceeeccCC-CCcEEEcCCCCCCCCceeEEEE--CCEEEEEeccCCCCCceeeEEEEECC-CCceEecCCCCCCCCceeeE
Q 013909 98 TFADLPAP-DLEWEQMPSAPVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFT-DNKWVDRFDMPKDMAHSHLG 173 (434)
Q Consensus 98 ~~~~~~~~-~~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~-t~~W~~~~~~~~~~~r~~~~ 173 (434)
.+..|+.. +.+++.+..++.....+.++.. +..||+.+. .. +.+..|+.. +++++.+...+.+. ...+
T Consensus 13 ~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~-~~-----~~i~~~~~~~~g~l~~~~~~~~~~-~p~~- 84 (330)
T PRK11028 13 QIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVR-PE-----FRVLSYRIADDGALTFAAESPLPG-SPTH- 84 (330)
T ss_pred CEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEEC-CC-----CcEEEEEECCCCceEEeeeecCCC-CceE-
Confidence 44445443 2456555544443322333332 345677543 21 336666665 45676554333221 1122
Q ss_pred EEEe--CCEEEEEeccCCCCCCCCCceeEEEECCCCc--eEecCCCCCCcccceEEEE-C-CEEEEEcCCCCCCCCCCcc
Q 013909 174 VVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSETRK--WDSIPPLPSPRYSPATQLW-R-GRLHVMGGSKENRHTPGLE 247 (434)
Q Consensus 174 ~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~ 247 (434)
++.. ++.||+..- . .+.+..||..++. .+.+...+....-|.++.. + +.+|+..- ..+.+.
T Consensus 85 i~~~~~g~~l~v~~~-~-------~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~-----~~~~v~ 151 (330)
T PRK11028 85 ISTDHQGRFLFSASY-N-------ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL-----KEDRIR 151 (330)
T ss_pred EEECCCCCEEEEEEc-C-------CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC-----CCCEEE
Confidence 3333 445666532 1 2466777775431 1122222222223444333 3 35666532 134566
Q ss_pred eEEE
Q 013909 248 HWSI 251 (434)
Q Consensus 248 ~~~~ 251 (434)
+|++
T Consensus 152 v~d~ 155 (330)
T PRK11028 152 LFTL 155 (330)
T ss_pred EEEE
Confidence 7775
No 121
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=78.34 E-value=36 Score=30.76 Aligned_cols=138 Identities=14% Similarity=0.169 Sum_probs=67.5
Q ss_pred ceeEEEECCCCceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCce
Q 013909 197 SRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHR 276 (434)
Q Consensus 197 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~ 276 (434)
..|-.+|..|.+=.+-=..+.+....-+ .-+++|+.+. +...+..|+. .+-.--+.-.+|....
T Consensus 165 ~tVRLWD~rTgt~v~sL~~~s~VtSlEv-s~dG~ilTia------~gssV~Fwda-------ksf~~lKs~k~P~nV~-- 228 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLEFNSPVTSLEV-SQDGRILTIA------YGSSVKFWDA-------KSFGLLKSYKMPCNVE-- 228 (334)
T ss_pred CceEEEEeccCcEEEEEecCCCCcceee-ccCCCEEEEe------cCceeEEecc-------ccccceeeccCccccc--
Confidence 4566777776653322223333322222 2245555442 1223444542 2211112224555544
Q ss_pred eEEE-ECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCC-eEE-cCCCCCCCCccceeEEEECCEEEE
Q 013909 277 ACFV-FNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMK-WKV-LPPMPKPNSHIECAWVIVNNSIII 352 (434)
Q Consensus 277 ~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~-W~~-~~~~p~~r~~~~~~~~~~~~~i~v 352 (434)
++.+ -+..+||.||.+.. ++.|| .+.. -.. ...-+.|. |... ...+|.+|.
T Consensus 229 SASL~P~k~~fVaGged~~----------------------~~kfDy~TgeEi~~~nkgh~gpV--hcVr-FSPdGE~yA 283 (334)
T KOG0278|consen 229 SASLHPKKEFFVAGGEDFK----------------------VYKFDYNTGEEIGSYNKGHFGPV--HCVR-FSPDGELYA 283 (334)
T ss_pred cccccCCCceEEecCcceE----------------------EEEEeccCCceeeecccCCCCce--EEEE-ECCCCceee
Confidence 3333 36689999998754 78888 5543 222 11222221 1111 345899999
Q ss_pred EcCcCCCCCCccceeeeccEEEEECCCC--ceEEe
Q 013909 353 TGGTTEKHPMTKRMILVGEVFQFHLDSL--TWSVI 385 (434)
Q Consensus 353 ~GG~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~~ 385 (434)
.|..++.- .+|+-.+..- .|..+
T Consensus 284 sGSEDGTi----------rlWQt~~~~~~~~~~~~ 308 (334)
T KOG0278|consen 284 SGSEDGTI----------RLWQTTPGKTYGLWKCV 308 (334)
T ss_pred ccCCCceE----------EEEEecCCCchhhcccc
Confidence 99887643 4666555432 36554
No 122
>smart00284 OLF Olfactomedin-like domains.
Probab=77.18 E-value=59 Score=29.74 Aligned_cols=181 Identities=12% Similarity=0.097 Sum_probs=94.7
Q ss_pred CCEEEEEeccCCCCCCCCCceeEEEEC----CCCceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEe
Q 013909 178 GRYIYIVSGQYGPQCRGPTSRTFVLDS----ETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAV 253 (434)
Q Consensus 178 ~~~lyv~GG~~~~~~~~~~~~~~~yd~----~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~ 253 (434)
++++|++.+.... .+.++.|.. ....+.+.-.+|.+-.+...+++++.+|.--.. ...+-.|++.
T Consensus 34 ~~~~wv~~~~~~~-----~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~~-----s~~iiKydL~- 102 (255)
T smart00284 34 KSLYWYMPLNTRV-----LRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKFN-----SHDICRFDLT- 102 (255)
T ss_pred CceEEEEccccCC-----CcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEecC-----CccEEEEECC-
Confidence 5788888664311 245666633 234444444678888888899999999986332 2345556642
Q ss_pred eccccccCceEEccCCCCCCC------------ceeEEEECCEEEEEcCC-CCCCCCCCCCCccccccccceeeCcEEEe
Q 013909 254 KDGKALEKAWRTEIPIPRGGP------------HRACFVFNDRLFVVGGQ-EGDFMAKPGSPIFKCSRRHEVVYGDVYML 320 (434)
Q Consensus 254 ~~~~~~~~~W~~~~~~p~~~~------------~~~~~~~~~~iyv~GG~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~y 320 (434)
+++-.....+|.+.+ ..-.++-++-|+|+=.. ...+. -.|-.+
T Consensus 103 ------t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~------------------ivvSkL 158 (255)
T smart00284 103 ------TETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGK------------------IVISKL 158 (255)
T ss_pred ------CCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCC------------------EEEEee
Confidence 444332233332211 11233445556665221 11110 013345
Q ss_pred CC-----CCCeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccCCCc--ee
Q 013909 321 DD-----EMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKLPYR--IK 393 (434)
Q Consensus 321 d~-----~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~lp~~--r~ 393 (434)
|+ ..+|.. ..+ +...+ -+.++-|.||++-...... ..-.+.||+.+++=.. ..+|.+ ..
T Consensus 159 np~tL~ve~tW~T--~~~--k~sa~-naFmvCGvLY~~~s~~~~~--------~~I~yayDt~t~~~~~-~~i~f~n~y~ 224 (255)
T smart00284 159 NPATLTIENTWIT--TYN--KRSAS-NAFMICGILYVTRSLGSKG--------EKVFYAYDTNTGKEGH-LDIPFENMYE 224 (255)
T ss_pred CcccceEEEEEEc--CCC--ccccc-ccEEEeeEEEEEccCCCCC--------cEEEEEEECCCCccce-eeeeeccccc
Confidence 52 236765 333 33333 3367778999996422221 1247899999877333 344433 33
Q ss_pred eeeeEEE---CCEEEEE
Q 013909 394 TTLTGFW---DGWLYFT 407 (434)
Q Consensus 394 ~~~~~~~---~~~l~v~ 407 (434)
.+++.-+ +.+||+.
T Consensus 225 ~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 225 YISMLDYNPNDRKLYAW 241 (255)
T ss_pred cceeceeCCCCCeEEEE
Confidence 4455444 5677775
No 123
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=76.47 E-value=7.1 Score=37.06 Aligned_cols=105 Identities=14% Similarity=0.167 Sum_probs=59.3
Q ss_pred ceeeccCCCCcEEEcCCCCCCCCceeEEEE-CCEEEEEecc---CCCCCceeeEEEEECCCCc--eEe-cCCCCC---CC
Q 013909 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI-KNLFYVFAGY---GSLDYVHSHVDVYNFTDNK--WVD-RFDMPK---DM 167 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~---~~~~~~~~~v~~yd~~t~~--W~~-~~~~~~---~~ 167 (434)
.++.+|..+++- ++.++..-.++.+... +..+|+..=+ ...+...+-+++||++|-+ ++. +|+-|. -.
T Consensus 18 rv~viD~d~~k~--lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~ 95 (342)
T PF06433_consen 18 RVYVIDADSGKL--LGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVP 95 (342)
T ss_dssp EEEEEETTTTEE--EEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS-
T ss_pred eEEEEECCCCcE--EEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecc
Confidence 677777777653 3444444444444333 4467776543 2233456779999999984 443 233211 01
Q ss_pred CceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEe
Q 013909 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDS 211 (434)
Q Consensus 168 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~ 211 (434)
.+...++...+..+||+- ..|..+|-+-|.+.++-..
T Consensus 96 ~~~~~~ls~dgk~~~V~N-------~TPa~SVtVVDl~~~kvv~ 132 (342)
T PF06433_consen 96 YKNMFALSADGKFLYVQN-------FTPATSVTVVDLAAKKVVG 132 (342)
T ss_dssp -GGGEEE-TTSSEEEEEE-------ESSSEEEEEEETTTTEEEE
T ss_pred cccceEEccCCcEEEEEc-------cCCCCeEEEEECCCCceee
Confidence 122233333456777762 3567899999999988643
No 124
>PRK03629 tolB translocation protein TolB; Provisional
Probab=75.47 E-value=90 Score=31.02 Aligned_cols=189 Identities=11% Similarity=0.071 Sum_probs=92.4
Q ss_pred eeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceE
Q 013909 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPAT 224 (434)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~ 224 (434)
..++++|+.+++-+.+...+.. -......-.+.+|++.....+ ..+++.+|..+.+.+.+..-+...... .
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~--~~~~~~SPDG~~La~~~~~~g------~~~I~~~d~~tg~~~~lt~~~~~~~~~-~ 293 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRH--NGAPAFSPDGSKLAFALSKTG------SLNLYVMDLASGQIRQVTDGRSNNTEP-T 293 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCC--cCCeEECCCCCEEEEEEcCCC------CcEEEEEECCCCCEEEccCCCCCcCce-E
Confidence 3589999998887776655431 112222223456665533221 246999999998887775433221111 1
Q ss_pred EEECCE-EEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCc
Q 013909 225 QLWRGR-LHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPI 303 (434)
Q Consensus 225 ~~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 303 (434)
..-+++ |+......+ ..++|.++ ..+..-+.+........ .....-+++.+++.+....
T Consensus 294 wSPDG~~I~f~s~~~g-----~~~Iy~~d-----~~~g~~~~lt~~~~~~~-~~~~SpDG~~Ia~~~~~~g--------- 353 (429)
T PRK03629 294 WFPDSQNLAYTSDQAG-----RPQVYKVN-----INGGAPQRITWEGSQNQ-DADVSSDGKFMVMVSSNGG--------- 353 (429)
T ss_pred ECCCCCEEEEEeCCCC-----CceEEEEE-----CCCCCeEEeecCCCCcc-CEEECCCCCEEEEEEccCC---------
Confidence 122444 443332211 23445433 33443333322111111 1222235555555433221
Q ss_pred cccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCce
Q 013909 304 FKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTW 382 (434)
Q Consensus 304 ~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W 382 (434)
...++.+| .+.+++.+..... -. ..+ ...+++.+++.+.++.. ..+++.+.+...=
T Consensus 354 ----------~~~I~~~dl~~g~~~~Lt~~~~-~~--~p~-~SpDG~~i~~~s~~~~~---------~~l~~~~~~G~~~ 410 (429)
T PRK03629 354 ----------QQHIAKQDLATGGVQVLTDTFL-DE--TPS-IAPNGTMVIYSSSQGMG---------SVLNLVSTDGRFK 410 (429)
T ss_pred ----------CceEEEEECCCCCeEEeCCCCC-CC--Cce-ECCCCCEEEEEEcCCCc---------eEEEEEECCCCCe
Confidence 12588888 7777887764211 11 112 45678878777754432 2466667655443
Q ss_pred EEe
Q 013909 383 SVI 385 (434)
Q Consensus 383 ~~~ 385 (434)
..+
T Consensus 411 ~~l 413 (429)
T PRK03629 411 ARL 413 (429)
T ss_pred EEC
Confidence 333
No 125
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=74.21 E-value=31 Score=33.46 Aligned_cols=80 Identities=15% Similarity=0.084 Sum_probs=41.0
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~ 207 (434)
+++-++|++.... ...++..|+.+.+=+++++.+.. ...+..++.-++.+|.+-. ...++..|+.|.
T Consensus 46 dG~kllF~s~~dg---~~nly~lDL~t~~i~QLTdg~g~-~~~g~~~s~~~~~~~Yv~~---------~~~l~~vdL~T~ 112 (386)
T PF14583_consen 46 DGRKLLFASDFDG---NRNLYLLDLATGEITQLTDGPGD-NTFGGFLSPDDRALYYVKN---------GRSLRRVDLDTL 112 (386)
T ss_dssp TS-EEEEEE-TTS---S-EEEEEETTT-EEEE---SS-B--TTT-EE-TTSSEEEEEET---------TTEEEEEETTT-
T ss_pred CCCEEEEEeccCC---CcceEEEEcccCEEEECccCCCC-CccceEEecCCCeEEEEEC---------CCeEEEEECCcC
Confidence 5555666554222 23489999999999999887642 2334444445677655421 257888999888
Q ss_pred ceEecCCCCCCcc
Q 013909 208 KWDSIPPLPSPRY 220 (434)
Q Consensus 208 ~W~~~~~~p~~r~ 220 (434)
+=+.+-..|..-.
T Consensus 113 e~~~vy~~p~~~~ 125 (386)
T PF14583_consen 113 EERVVYEVPDDWK 125 (386)
T ss_dssp -EEEEEE--TTEE
T ss_pred cEEEEEECCcccc
Confidence 7666655554433
No 126
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=71.47 E-value=82 Score=28.76 Aligned_cols=218 Identities=20% Similarity=0.230 Sum_probs=100.6
Q ss_pred CCceEecCC---CCCCCCceeeEEEE--eCCEEEEEe--ccCCCCCCCCCceeEEEECC-CCceEecCCCCCC-------
Q 013909 154 DNKWVDRFD---MPKDMAHSHLGVVS--DGRYIYIVS--GQYGPQCRGPTSRTFVLDSE-TRKWDSIPPLPSP------- 218 (434)
Q Consensus 154 t~~W~~~~~---~~~~~~r~~~~~~~--~~~~lyv~G--G~~~~~~~~~~~~~~~yd~~-t~~W~~~~~~p~~------- 218 (434)
..+|+.... .+.+..+....+.+ -+++|+++- +...... ......+..... -.+|+....++..
T Consensus 29 G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~-~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~ 107 (275)
T PF13088_consen 29 GKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGW-SGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSG 107 (275)
T ss_dssp TTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESC-CTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEE
T ss_pred CCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCC-CceeEEEEEECCCCCCCCCccccccccccceec
Confidence 357987432 22111233333333 378999886 2221111 111111233333 4579877543211
Q ss_pred -cccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCC--CCceeEEE-ECCEEEEEcCCCCC
Q 013909 219 -RYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRG--GPHRACFV-FNDRLFVVGGQEGD 294 (434)
Q Consensus 219 -r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~--~~~~~~~~-~~~~iyv~GG~~~~ 294 (434)
-....+..-++++++.. +.. ....+...++.-+....+|+...+.+.. ....+.+. -+++|+++--....
T Consensus 108 ~~~~~~i~~~~G~l~~~~-~~~-----~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~~~ 181 (275)
T PF13088_consen 108 PGRGPPIQLPDGRLIAPY-YHE-----SGGSFSAFVYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTEGN 181 (275)
T ss_dssp CSEEEEEEECTTEEEEEE-EEE-----SSCEEEEEEEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEECSS
T ss_pred cceeeeeEecCCCEEEEE-eec-----cccCcceEEEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEccCC
Confidence 11222344478888872 111 1111222222222456689887665422 22223332 37788888643211
Q ss_pred CCCCCCCCccccccccceeeCcEEEe--CCCCCeEEcC--CCCCCCCccceeEEE-ECCEEEEEcCcCCCCCCccceeee
Q 013909 295 FMAKPGSPIFKCSRRHEVVYGDVYML--DDEMKWKVLP--PMPKPNSHIECAWVI-VNNSIIITGGTTEKHPMTKRMILV 369 (434)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~v~~y--d~~~~W~~~~--~~p~~r~~~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~ 369 (434)
. ...+.+ |...+|+... .+|.+.... .++. .+++++++....... .-
T Consensus 182 ~-------------------~~~~~~S~D~G~TWs~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~r-------~~ 233 (275)
T PF13088_consen 182 D-------------------DIYISRSTDGGRTWSPPQPTNLPNPNSSI--SLVRLSDGRLLLVYNNPDGR-------SN 233 (275)
T ss_dssp T-------------------EEEEEEESSTTSS-EEEEEEECSSCCEEE--EEEECTTSEEEEEEECSSTS-------EE
T ss_pred C-------------------cEEEEEECCCCCcCCCceecccCcccCCc--eEEEcCCCCEEEEEECCCCC-------Cc
Confidence 0 012222 2455999864 455554432 2233 367888887722111 12
Q ss_pred ccEEEEECCCCceEEeccCCCce----eeeeeEEE-CCEEEE
Q 013909 370 GEVFQFHLDSLTWSVIGKLPYRI----KTTLTGFW-DGWLYF 406 (434)
Q Consensus 370 ~~v~~yd~~~~~W~~~~~lp~~r----~~~~~~~~-~~~l~v 406 (434)
-.+++-.....+|.....+.... .+..++.. +++|+|
T Consensus 234 l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 234 LSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp EEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred eEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 24444445578899865554433 33444554 569886
No 127
>PRK04043 tolB translocation protein TolB; Provisional
Probab=69.82 E-value=1.2e+02 Score=30.06 Aligned_cols=104 Identities=13% Similarity=0.115 Sum_probs=61.8
Q ss_pred ceeeccCCCCcEEEcCCCCCCCCceeEEEECC-EEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEE
Q 013909 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKN-LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS 176 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~ 176 (434)
.++.+|..+++=+.+...+.. ........++ +|++.-...+ ..++|.+|..+++++++...+. .-......-
T Consensus 214 ~Iyv~dl~tg~~~~lt~~~g~-~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~LT~~~~--~d~~p~~SP 286 (419)
T PRK04043 214 TLYKYNLYTGKKEKIASSQGM-LVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQITNYPG--IDVNGNFVE 286 (419)
T ss_pred EEEEEECCCCcEEEEecCCCc-EEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEcccCCC--ccCccEECC
Confidence 678888877765666542211 1112233344 5555543332 2469999999999998876542 111222233
Q ss_pred eCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCC
Q 013909 177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP 214 (434)
Q Consensus 177 ~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~ 214 (434)
.+.+||+.....+ ..+++.+|..+.+.+++..
T Consensus 287 DG~~I~F~Sdr~g------~~~Iy~~dl~~g~~~rlt~ 318 (419)
T PRK04043 287 DDKRIVFVSDRLG------YPNIFMKKLNSGSVEQVVF 318 (419)
T ss_pred CCCEEEEEECCCC------CceEEEEECCCCCeEeCcc
Confidence 4567777654321 3689999999988877753
No 128
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=69.08 E-value=1.2e+02 Score=29.79 Aligned_cols=77 Identities=18% Similarity=0.090 Sum_probs=48.7
Q ss_pred ceeEEEECCEEEEEe---ccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCc
Q 013909 121 DGAAIQIKNLFYVFA---GYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTS 197 (434)
Q Consensus 121 ~~~~~~~~~~iyv~G---G~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~ 197 (434)
.+++..+++.+-++- -+...+...++++++|-.-+-=-.+..+.. .-.-+++-..++.+|++-= ..++
T Consensus 379 ~f~~deyngylRvaTt~~dW~~~de~~N~vYilDe~lnvvGkltGl~~--gERIYAvRf~gdv~yiVTf-------rqtD 449 (603)
T COG4880 379 SFDGDEYNGYLRVATTLSDWTSEDEPVNAVYILDENLNVVGKLTGLAP--GERIYAVRFVGDVLYIVTF-------RQTD 449 (603)
T ss_pred cccCcccceEEEEEeeecccccCCCccceeEEEcCCCcEEEEEeccCC--CceEEEEEEeCceEEEEEE-------eccC
Confidence 455556666655543 334445577889999988877666665543 2334567778999998732 1235
Q ss_pred eeEEEECCC
Q 013909 198 RTFVLDSET 206 (434)
Q Consensus 198 ~~~~yd~~t 206 (434)
-++..|...
T Consensus 450 PlfviDlsN 458 (603)
T COG4880 450 PLFVIDLSN 458 (603)
T ss_pred ceEEEEcCC
Confidence 566777654
No 129
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=68.82 E-value=1.2e+02 Score=29.71 Aligned_cols=241 Identities=13% Similarity=0.139 Sum_probs=111.3
Q ss_pred ceeeccCCCCcEEEcCCCCCCCCceeEEEE-CCEEEEEeccCCCCC-----ceeeEEEEECCCCceE--ecCCCCCCCCc
Q 013909 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI-KNLFYVFAGYGSLDY-----VHSHVDVYNFTDNKWV--DRFDMPKDMAH 169 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~-----~~~~v~~yd~~t~~W~--~~~~~~~~~~r 169 (434)
.+..+|..+++...- .++.++... ++-. +++.+++...+.... ....++++...+..-+ .+-..+.+.-.
T Consensus 151 ~l~v~Dl~tg~~l~d-~i~~~~~~~-~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~ 228 (414)
T PF02897_consen 151 TLRVFDLETGKFLPD-GIENPKFSS-VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFW 228 (414)
T ss_dssp EEEEEETTTTEEEEE-EEEEEESEE-EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTS
T ss_pred EEEEEECCCCcCcCC-cccccccce-EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcE
Confidence 466667766633210 112222221 3333 435555555544322 2456999998887644 33222221111
Q ss_pred eeeEEEEeCCE-EEEEeccCCCCCCCCCceeEEEECCCC-----ceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCC
Q 013909 170 SHLGVVSDGRY-IYIVSGQYGPQCRGPTSRTFVLDSETR-----KWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHT 243 (434)
Q Consensus 170 ~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~~~yd~~t~-----~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 243 (434)
.......-+++ |++.-.. .. . .++++..|.... .|..+.+- ..-....+...++.+|+....+..
T Consensus 229 ~~~~~~s~d~~~l~i~~~~-~~---~-~s~v~~~d~~~~~~~~~~~~~l~~~-~~~~~~~v~~~~~~~yi~Tn~~a~--- 299 (414)
T PF02897_consen 229 FVSVSRSKDGRYLFISSSS-GT---S-ESEVYLLDLDDGGSPDAKPKLLSPR-EDGVEYYVDHHGDRLYILTNDDAP--- 299 (414)
T ss_dssp EEEEEE-TTSSEEEEEEES-SS---S-EEEEEEEECCCTTTSS-SEEEEEES-SSS-EEEEEEETTEEEEEE-TT-T---
T ss_pred EEEEEecCcccEEEEEEEc-cc---c-CCeEEEEeccccCCCcCCcEEEeCC-CCceEEEEEccCCEEEEeeCCCCC---
Confidence 22222233444 4433221 11 1 378999999875 78877542 122223344558999998763321
Q ss_pred CCcceEEEEeeccccccCceEE-ccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeCC
Q 013909 244 PGLEHWSIAVKDGKALEKAWRT-EIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDD 322 (434)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~W~~-~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~ 322 (434)
....+...+.+ +....|.. +.+-.....--.+...++.|++.-=.++ ...+..+|.
T Consensus 300 -~~~l~~~~l~~--~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~--------------------~~~l~v~~~ 356 (414)
T PF02897_consen 300 -NGRLVAVDLAD--PSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENG--------------------SSRLRVYDL 356 (414)
T ss_dssp -T-EEEEEETTS--TSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETT--------------------EEEEEEEET
T ss_pred -CcEEEEecccc--cccccceeEEcCCCCceeEEEEEEECCEEEEEEEECC--------------------ccEEEEEEC
Confidence 11222222111 22224664 4333322222255567888888764443 335888873
Q ss_pred CCCeEEcC-CCCCCCCccceeEEE---ECCEE-EEEcCcCCCCCCccceeeeccEEEEECCCCceEEe
Q 013909 323 EMKWKVLP-PMPKPNSHIECAWVI---VNNSI-IITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVI 385 (434)
Q Consensus 323 ~~~W~~~~-~~p~~r~~~~~~~~~---~~~~i-~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 385 (434)
...|.... ++|. .+ .+.... ..+.+ |.+.+... -..++.||+++++.+.+
T Consensus 357 ~~~~~~~~~~~p~--~g-~v~~~~~~~~~~~~~~~~ss~~~----------P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 357 DDGKESREIPLPE--AG-SVSGVSGDFDSDELRFSYSSFTT----------PPTVYRYDLATGELTLL 411 (414)
T ss_dssp T-TEEEEEEESSS--SS-EEEEEES-TT-SEEEEEEEETTE----------EEEEEEEETTTTCEEEE
T ss_pred CCCcEEeeecCCc--ce-EEeccCCCCCCCEEEEEEeCCCC----------CCEEEEEECCCCCEEEE
Confidence 33343332 3332 11 111111 12333 33555442 23899999999997765
No 130
>PRK02888 nitrous-oxide reductase; Validated
Probab=66.72 E-value=1.4e+02 Score=31.21 Aligned_cols=53 Identities=15% Similarity=0.105 Sum_probs=34.6
Q ss_pred EEEeCCCC----CeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCc
Q 013909 317 VYMLDDEM----KWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLT 381 (434)
Q Consensus 317 v~~yd~~~----~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~ 381 (434)
|-+.|... .+..+.-+|.|++-|++.+..-+..+|+-|+.+ +++-++|+++..
T Consensus 298 V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS------------~tVSVIDv~k~k 354 (635)
T PRK02888 298 VPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLS------------PTVTVIDVRKLD 354 (635)
T ss_pred EEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCC------------CcEEEEEChhhh
Confidence 66777222 466666788888888875333344566666643 578888887744
No 131
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=65.56 E-value=60 Score=30.51 Aligned_cols=115 Identities=15% Similarity=0.178 Sum_probs=65.6
Q ss_pred CCCCCCCceeEEEE--CCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCC-eEEcCCCCCCCCccceeE
Q 013909 268 PIPRGGPHRACFVF--NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMK-WKVLPPMPKPNSHIECAW 343 (434)
Q Consensus 268 ~~p~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~-W~~~~~~p~~r~~~~~~~ 343 (434)
|+|...+ .++.. ...+.+|+=..+.. ..++| .+.+ -..+ ..|..|...++++
T Consensus 2 ~lP~RgH--~~a~~p~~~~avafaRRPG~~---------------------~~v~D~~~g~~~~~~-~a~~gRHFyGHg~ 57 (305)
T PF07433_consen 2 PLPARGH--GVAAHPTRPEAVAFARRPGTF---------------------ALVFDCRTGQLLQRL-WAPPGRHFYGHGV 57 (305)
T ss_pred CCCcccc--ceeeCCCCCeEEEEEeCCCcE---------------------EEEEEcCCCceeeEE-cCCCCCEEecCEE
Confidence 4555554 44444 67888888766542 67777 4443 3333 3466777777776
Q ss_pred EEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccCCCce-eeeeeEEE-CC-EEEEEccccCCC
Q 013909 344 VIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKLPYRI-KTTLTGFW-DG-WLYFTSGQRDRG 414 (434)
Q Consensus 344 ~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r-~~~~~~~~-~~-~l~v~GG~~~~~ 414 (434)
...+++++..--.+... --.-+-+||.+ .....+.+.+..= --|-+... ++ .|.|.-|.....
T Consensus 58 fs~dG~~LytTEnd~~~-------g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Th 123 (305)
T PF07433_consen 58 FSPDGRLLYTTENDYET-------GRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETH 123 (305)
T ss_pred EcCCCCEEEEeccccCC-------CcEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccC
Confidence 77766644433222222 12368899988 6777777765432 22444343 44 666666655433
No 132
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.62 E-value=59 Score=29.39 Aligned_cols=77 Identities=13% Similarity=0.292 Sum_probs=48.5
Q ss_pred CCCCCCCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCceEe--cCCCCCCCCceeeEEEEeCCEEEEEeccCCC
Q 013909 113 PSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVD--RFDMPKDMAHSHLGVVSDGRYIYIVSGQYGP 190 (434)
Q Consensus 113 ~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~--~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~ 190 (434)
|....+++..+.+.-+++++|+- -+.+..+|+. +.+.|. +..+.+-...++.|-|-||
T Consensus 217 P~~gl~~s~iAS~SqDg~viIwt--------------~~~e~e~wk~tll~~f~~--~~w~vSWS~sGn~LaVs~G---- 276 (299)
T KOG1332|consen 217 PSVGLPKSTIASCSQDGTVIIWT--------------KDEEYEPWKKTLLEEFPD--VVWRVSWSLSGNILAVSGG---- 276 (299)
T ss_pred cccCCCceeeEEecCCCcEEEEE--------------ecCccCcccccccccCCc--ceEEEEEeccccEEEEecC----
Confidence 34456777777777777777652 2344556753 344444 4555556666777777777
Q ss_pred CCCCCCceeEEEECCCC-ceEecCC
Q 013909 191 QCRGPTSRTFVLDSETR-KWDSIPP 214 (434)
Q Consensus 191 ~~~~~~~~~~~yd~~t~-~W~~~~~ 214 (434)
.+.+.++-+..+ +|.+++.
T Consensus 277 -----dNkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 277 -----DNKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred -----CcEEEEEEeCCCCcEEEccc
Confidence 367777776655 8998864
No 133
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=62.84 E-value=1.5e+02 Score=28.62 Aligned_cols=104 Identities=10% Similarity=0.056 Sum_probs=59.3
Q ss_pred ceeeccCCCCcEEEcCCCCCCCCceeEEEE-CCEEEEEecc---CCCCCceeeEEEEECCCCceEecCCCCCCCCc----
Q 013909 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI-KNLFYVFAGY---GSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAH---- 169 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~---~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r---- 169 (434)
.+..+|..+. +.+..++..+..+.+..- +..||+.-.+ ...+.-.+.+.+||+.|.+=..--++|. .||
T Consensus 28 ~v~ViD~~~~--~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~-~p~~~~~ 104 (352)
T TIGR02658 28 QVYTIDGEAG--RVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE-GPRFLVG 104 (352)
T ss_pred eEEEEECCCC--EEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC-Cchhhcc
Confidence 6777777764 344445544443333333 4579998763 1222235679999999987542222221 122
Q ss_pred ---eeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEe
Q 013909 170 ---SHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDS 211 (434)
Q Consensus 170 ---~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~ 211 (434)
...++...+..|||.- ..+.+.+-+.|.++++-..
T Consensus 105 ~~~~~~~ls~dgk~l~V~n-------~~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQ-------FSPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred CccceEEECCCCCEEEEec-------CCCCCEEEEEECCCCcEEE
Confidence 1233333455788761 2335789999999887644
No 134
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=61.78 E-value=1.4e+02 Score=28.99 Aligned_cols=100 Identities=14% Similarity=0.027 Sum_probs=54.8
Q ss_pred CCcEEEcCCCCCCCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCC-----CCCCceeeEEEEeCCE
Q 013909 106 DLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP-----KDMAHSHLGVVSDGRY 180 (434)
Q Consensus 106 ~~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~-----~~~~r~~~~~~~~~~~ 180 (434)
.+.|+.+.. ..-..--++.++|++|++.- ...++++|..- +=+++++.. ........-.+...|+
T Consensus 189 ~~~Wt~l~~--~~~~~~DIi~~kGkfYAvD~-------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs~Gd 258 (373)
T PLN03215 189 GNVLKALKQ--MGYHFSDIIVHKGQTYALDS-------IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVECCGE 258 (373)
T ss_pred CCeeeEccC--CCceeeEEEEECCEEEEEcC-------CCeEEEEecCC-ceeeecceecccccCCcccCceeEEEECCE
Confidence 478998864 22234556778999999821 12366666431 112222211 0001122335667788
Q ss_pred EEEEeccCCCCCC-----------CCCceeEEEECCCCceEecCCC
Q 013909 181 IYIVSGQYGPQCR-----------GPTSRTFVLDSETRKWDSIPPL 215 (434)
Q Consensus 181 lyv~GG~~~~~~~-----------~~~~~~~~yd~~t~~W~~~~~~ 215 (434)
|+++..+...... ...-.|+..|.+..+|.++..+
T Consensus 259 LLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sL 304 (373)
T PLN03215 259 LYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTL 304 (373)
T ss_pred EEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEeccc
Confidence 9999875321100 0112456668888999998765
No 135
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=60.33 E-value=2.2e+02 Score=29.65 Aligned_cols=135 Identities=16% Similarity=0.055 Sum_probs=62.6
Q ss_pred hcCCCCCCcCcceeeeeecccccCCceEEecCCCCCcccc----ceeeeEEEccCCcchhhhhccceeeccCCCCcEEEc
Q 013909 37 ASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDR----QRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQM 112 (434)
Q Consensus 37 ~~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~----~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 112 (434)
++||..++ -+..||..+++-..+-.|...+..+ ..-++..+..+-..+.+ ....+-..|+...+-.+-
T Consensus 169 i~~Gs~Dg-------~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgD-S~G~V~FWd~~~gTLiqS 240 (691)
T KOG2048|consen 169 IAGGSIDG-------VIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGD-SAGTVTFWDSIFGTLIQS 240 (691)
T ss_pred EEecccCc-------eEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEec-CCceEEEEcccCcchhhh
Confidence 56777566 6778888887776655555444222 12233333222111111 112444444444321110
Q ss_pred CCCCCCCCceeEEEE-CCEEEEEeccCCCCCceeeEEEEECCCC--ceEecCCCCCCCCceeeEEEEeCCEEEEEeccC
Q 013909 113 PSAPVPRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDN--KWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQY 188 (434)
Q Consensus 113 ~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~ 188 (434)
-....+ .-.++++- ++.-++.+|.++ .+..|...++ +|.....-..+ ++.--+++++++ +.+.||.+
T Consensus 241 ~~~h~a-dVl~Lav~~~~d~vfsaGvd~------~ii~~~~~~~~~~wv~~~~r~~h-~hdvrs~av~~~-~l~sgG~d 310 (691)
T KOG2048|consen 241 HSCHDA-DVLALAVADNEDRVFSAGVDP------KIIQYSLTTNKSEWVINSRRDLH-AHDVRSMAVIEN-ALISGGRD 310 (691)
T ss_pred hhhhhc-ceeEEEEcCCCCeEEEccCCC------ceEEEEecCCccceeeeccccCC-cccceeeeeecc-eEEeccee
Confidence 001111 11233333 324444555543 2555555444 68765432221 355557788877 55677754
No 136
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=59.50 E-value=1.6e+02 Score=27.83 Aligned_cols=64 Identities=14% Similarity=0.123 Sum_probs=32.9
Q ss_pred EEEEECCCCc-eEecCCCCC--CCCceeeEEEEeCCEEEEEeccC----CCCCCCCCceeEEEECCCCceEec
Q 013909 147 VDVYNFTDNK-WVDRFDMPK--DMAHSHLGVVSDGRYIYIVSGQY----GPQCRGPTSRTFVLDSETRKWDSI 212 (434)
Q Consensus 147 v~~yd~~t~~-W~~~~~~~~--~~~r~~~~~~~~~~~lyv~GG~~----~~~~~~~~~~~~~yd~~t~~W~~~ 212 (434)
+..+++++.. |+.+++... +..|..=..+--++.+|+- -.. +.......-.+|++||. ...+++
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfg-t~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l 157 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFG-DMGYFDLGKSEERPTGSLYRVDPD-GGVVRL 157 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEe-CCCccccCccccCCcceEEEEcCC-CCEEEe
Confidence 5666665433 355543321 1235555555566777753 222 12212344589999994 444444
No 137
>PRK04043 tolB translocation protein TolB; Provisional
Probab=59.44 E-value=1.9e+02 Score=28.68 Aligned_cols=193 Identities=9% Similarity=0.006 Sum_probs=98.1
Q ss_pred eEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEE
Q 013909 146 HVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQ 225 (434)
Q Consensus 146 ~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~ 225 (434)
++|++|+.+++=+.+...+. .-......-.+.+|.+.-...+ ..++|.+|..+.+++++.+.+..-......
T Consensus 214 ~Iyv~dl~tg~~~~lt~~~g--~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~S 285 (419)
T PRK04043 214 TLYKYNLYTGKKEKIASSQG--MLVVSDVSKDGSKLLLTMAPKG------QPDIYLYDTNTKTLTQITNYPGIDVNGNFV 285 (419)
T ss_pred EEEEEECCCCcEEEEecCCC--cEEeeEECCCCCEEEEEEccCC------CcEEEEEECCCCcEEEcccCCCccCccEEC
Confidence 69999999887776665332 1111222223446665543221 368999999999999887554321222222
Q ss_pred EECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccc
Q 013909 226 LWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFK 305 (434)
Q Consensus 226 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 305 (434)
.-+.+|+......+ ..++|.++ ..+.+.+++..... .. ....-+++.+++-......
T Consensus 286 PDG~~I~F~Sdr~g-----~~~Iy~~d-----l~~g~~~rlt~~g~--~~-~~~SPDG~~Ia~~~~~~~~---------- 342 (419)
T PRK04043 286 EDDKRIVFVSDRLG-----YPNIFMKK-----LNSGSVEQVVFHGK--NN-SSVSTYKNYIVYSSRETNN---------- 342 (419)
T ss_pred CCCCEEEEEECCCC-----CceEEEEE-----CCCCCeEeCccCCC--cC-ceECCCCCEEEEEEcCCCc----------
Confidence 23456777654322 23444433 44555544432211 11 2233355544444332110
Q ss_pred cccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEE
Q 013909 306 CSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSV 384 (434)
Q Consensus 306 ~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 384 (434)
.......+++.+| .+..++.+.... ... ..+ ...+|+.++|-...+.. ..++.++++.+.=..
T Consensus 343 ---~~~~~~~~I~v~d~~~g~~~~LT~~~--~~~-~p~-~SPDG~~I~f~~~~~~~---------~~L~~~~l~g~~~~~ 406 (419)
T PRK04043 343 ---EFGKNTFNLYLISTNSDYIRRLTANG--VNQ-FPR-FSSDGGSIMFIKYLGNQ---------SALGIIRLNYNKSFL 406 (419)
T ss_pred ---ccCCCCcEEEEEECCCCCeEECCCCC--CcC-CeE-ECCCCCEEEEEEccCCc---------EEEEEEecCCCeeEE
Confidence 0000124689999 777888886532 111 122 44566655554433222 368888887765444
Q ss_pred e
Q 013909 385 I 385 (434)
Q Consensus 385 ~ 385 (434)
+
T Consensus 407 l 407 (419)
T PRK04043 407 F 407 (419)
T ss_pred e
Confidence 4
No 138
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=59.34 E-value=1.2e+02 Score=30.97 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=35.1
Q ss_pred CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEE
Q 013909 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWS 250 (434)
Q Consensus 178 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 250 (434)
+-.||+.|- -.+||++|++...|-.--..-.+--++..+.--+.|+.+||.++ .++.||
T Consensus 145 scDly~~gs---------g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g-----~VEfwD 203 (703)
T KOG2321|consen 145 SCDLYLVGS---------GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDG-----VVEFWD 203 (703)
T ss_pred CccEEEeec---------CcceEEEEccccccccccccccccceeeeecCccceEEecccCc-----eEEEec
Confidence 345777653 37899999999988432212222222222222356888888653 577777
No 139
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=58.30 E-value=1.7e+02 Score=27.72 Aligned_cols=185 Identities=14% Similarity=0.280 Sum_probs=85.4
Q ss_pred eeEEEECCEEEEEeccC----CCCCceeeEEEEEC-CCCceEecCC-C--CCC---CCceeeEEEEeCCEEEEEeccCCC
Q 013909 122 GAAIQIKNLFYVFAGYG----SLDYVHSHVDVYNF-TDNKWVDRFD-M--PKD---MAHSHLGVVSDGRYIYIVSGQYGP 190 (434)
Q Consensus 122 ~~~~~~~~~iyv~GG~~----~~~~~~~~v~~yd~-~t~~W~~~~~-~--~~~---~~r~~~~~~~~~~~lyv~GG~~~~ 190 (434)
.+++.+++.|+.+..-. ........+..+.. ...+|..... + ... .......+++-+++||++=|....
T Consensus 2 PSLV~vgGvv~AvAEa~~~~~~~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkgn~IymLvG~y~~ 81 (310)
T PF13859_consen 2 PSLVEVGGVVFAVAEAQCKKSNDSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKGNKIYMLVGSYSR 81 (310)
T ss_dssp EEEEEETTEEEEEEEEESS-S-SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEEEETTEEEEEEEEESS
T ss_pred CCEEEECCEEEEEEEEEEccCCCCCceeEEEeEeeccccccccceeeecccccccccccceeeeeecceeEEEEEEEEec
Confidence 46788899999888642 11223333444443 4457876421 1 111 112356677789999987664333
Q ss_pred CCCCCCceeEEEE--CCCCceEecCCCCCCcccceEEEECCEEEEEcCCCC----CC--------CCCCcc-eEEEEeec
Q 013909 191 QCRGPTSRTFVLD--SETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKE----NR--------HTPGLE-HWSIAVKD 255 (434)
Q Consensus 191 ~~~~~~~~~~~yd--~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~----~~--------~~~~~~-~~~~~~~~ 255 (434)
.......++..+. ....+|.....++..-..+ .+.++-||-.+ .. .....+ .+.+.+|-
T Consensus 82 ~~~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~------~~~figgGGSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS 155 (310)
T PF13859_consen 82 SAGADDWGLLLVKSTDGGIKWGDTKSLPSTSFQS------WKQFIGGGGSGVVMEDGTLVFPVQATKKNGDGTVSLIIYS 155 (310)
T ss_dssp --SSTTEEEEEEEEESSSSEE---EE-GGGS-EE------EEEEEE-SEE-EE-TTS-EEEEEEEEETT---EEEEEEEE
T ss_pred cccccccceeeeeccCCcceeeecccCCchhccc------cceeecCCCCceEEcCCCEEEEEeeeccCccceEEEEEEE
Confidence 2111233444443 2333698776555322110 01233333211 00 011222 45665654
Q ss_pred cccccCceEEccCC-CCCCCceeEEEE-CCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEc-CC
Q 013909 256 GKALEKAWRTEIPI-PRGGPHRACFVF-NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVL-PP 331 (434)
Q Consensus 256 ~~~~~~~W~~~~~~-p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~-~~ 331 (434)
- ....+|+....+ |.....++++.. +++|+++.-++... ..||.-. -..+|++. ..
T Consensus 156 ~-d~g~~W~lskg~s~~gC~~psv~EWe~gkLlM~~~c~~g~-------------------rrVYeS~DmG~tWtea~gt 215 (310)
T PF13859_consen 156 T-DDGKTWKLSKGMSPAGCSDPSVVEWEDGKLLMMTACDDGR-------------------RRVYESGDMGTTWTEALGT 215 (310)
T ss_dssp S-STTSS-EE-S----TT-EEEEEEEE-TTEEEEEEE-TTS----------------------EEEESSTTSS-EE-TTT
T ss_pred C-CCccceEeccccCCCCcceEEEEeccCCeeEEEEecccce-------------------EEEEEEcccceehhhccCc
Confidence 2 237789986665 455566788888 88999998766441 2366554 66799984 44
Q ss_pred C
Q 013909 332 M 332 (434)
Q Consensus 332 ~ 332 (434)
+
T Consensus 216 l 216 (310)
T PF13859_consen 216 L 216 (310)
T ss_dssp T
T ss_pred c
Confidence 4
No 140
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=57.69 E-value=1.5e+02 Score=26.90 Aligned_cols=116 Identities=13% Similarity=0.223 Sum_probs=62.3
Q ss_pred ceEecCCCCC---CCCcee-eEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEECCEE
Q 013909 156 KWVDRFDMPK---DMAHSH-LGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRL 231 (434)
Q Consensus 156 ~W~~~~~~~~---~~~r~~-~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~i 231 (434)
.|+...|+.. ++|--. ..+.--.|.|+..|| -..+++.|.++.+-+..-. -..-+-|+++.-+..-
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG---------D~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~~ 169 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG---------DGVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNANG 169 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEecC---------CeEEEEEEecCCEEEEEEc-CCcceeeeeeecccCc
Confidence 4887776543 222222 222224688888887 2568899999988765521 1223445555433222
Q ss_pred EEEcCCCCCCCCCCcceEEEEeeccccccCceEEc-cC-----CCCCCCce--eEEEECCEEEEEcCCC
Q 013909 232 HVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTE-IP-----IPRGGPHR--ACFVFNDRLFVVGGQE 292 (434)
Q Consensus 232 yv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~-~~-----~p~~~~~~--~~~~~~~~iyv~GG~~ 292 (434)
=|+.|.+ ..++.+|+. ++.+=..+ .+ .-|+..+. .+...+..-+|+||-.
T Consensus 170 qilsG~E----DGtvRvWd~-------kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp 227 (325)
T KOG0649|consen 170 QILSGAE----DGTVRVWDT-------KTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP 227 (325)
T ss_pred ceeecCC----CccEEEEec-------cccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCC
Confidence 2333322 346778883 34443332 11 22322222 5566677788888754
No 141
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=56.74 E-value=2.9e+02 Score=29.93 Aligned_cols=42 Identities=17% Similarity=0.369 Sum_probs=22.8
Q ss_pred ceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCc--eEE
Q 013909 340 ECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLT--WSV 384 (434)
Q Consensus 340 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~ 384 (434)
..+-++.++.||+ |+...+..... .....+..||.++.+ |+-
T Consensus 309 ts~P~V~~g~VIv-G~~v~d~~~~~--~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 309 TSPPLVAGTTVVI-GGRVADNYSTD--EPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred ccCCEEECCEEEE-Eeccccccccc--CCCcEEEEEECCCCcEeeEE
Confidence 4445777887776 43221110000 022468899998876 654
No 142
>PRK10115 protease 2; Provisional
Probab=56.31 E-value=2.8e+02 Score=29.62 Aligned_cols=195 Identities=12% Similarity=0.095 Sum_probs=92.1
Q ss_pred eeEEEEECCCCce--EecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEEC--CCCceEecCCCCCCc
Q 013909 145 SHVDVYNFTDNKW--VDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDS--ETRKWDSIPPLPSPR 219 (434)
Q Consensus 145 ~~v~~yd~~t~~W--~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~--~t~~W~~~~~~p~~r 219 (434)
.++|++++.|+.- ..+-.-+. .......... +++..++..... ..+.++.|+. .+..|..+-+.+...
T Consensus 199 ~~v~~h~lgt~~~~d~lv~~e~~--~~~~~~~~~s~d~~~l~i~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~ 271 (686)
T PRK10115 199 YQVWRHTIGTPASQDELVYEEKD--DTFYVSLHKTTSKHYVVIHLASA-----TTSEVLLLDAELADAEPFVFLPRRKDH 271 (686)
T ss_pred CEEEEEECCCChhHCeEEEeeCC--CCEEEEEEEcCCCCEEEEEEECC-----ccccEEEEECcCCCCCceEEEECCCCC
Confidence 5699999998832 22222111 1222233333 444333443222 2367888883 234443332222211
Q ss_pred ccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCC
Q 013909 220 YSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKP 299 (434)
Q Consensus 220 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~ 299 (434)
.......++.+|+.--..... ...+.+ +.+ ...+|+.+.+......--.+...++.+++..-..+.
T Consensus 272 -~~~~~~~~~~ly~~tn~~~~~----~~l~~~---~~~-~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~----- 337 (686)
T PRK10115 272 -EYSLDHYQHRFYLRSNRHGKN----FGLYRT---RVR-DEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGL----- 337 (686)
T ss_pred -EEEEEeCCCEEEEEEcCCCCC----ceEEEe---cCC-CcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCE-----
Confidence 122334568888885432211 112222 111 146898876652221111444567888777654432
Q ss_pred CCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEE-EEC-CEEEE-EcCcCCCCCCccceeeeccEEEE
Q 013909 300 GSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWV-IVN-NSIII-TGGTTEKHPMTKRMILVGEVFQF 375 (434)
Q Consensus 300 ~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~-~~~-~~i~v-~GG~~~~~~~~~~~~~~~~v~~y 375 (434)
..++.+| .+.....+. ++.+......... ..+ +.+++ +.+.... .+++.|
T Consensus 338 ---------------~~l~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P----------~~~y~~ 391 (686)
T PRK10115 338 ---------------TSLRQINRKTREVIGIA-FDDPAYVTWIAYNPEPETSRLRYGYSSMTTP----------DTLFEL 391 (686)
T ss_pred ---------------EEEEEEcCCCCceEEec-CCCCceEeeecccCCCCCceEEEEEecCCCC----------CEEEEE
Confidence 3478888 455555543 1222221100000 011 33333 3343322 379999
Q ss_pred ECCCCceEEec
Q 013909 376 HLDSLTWSVIG 386 (434)
Q Consensus 376 d~~~~~W~~~~ 386 (434)
|+++++|+.+.
T Consensus 392 d~~~~~~~~l~ 402 (686)
T PRK10115 392 DMDTGERRVLK 402 (686)
T ss_pred ECCCCcEEEEE
Confidence 99999988764
No 143
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=55.72 E-value=22 Score=33.89 Aligned_cols=60 Identities=15% Similarity=0.061 Sum_probs=32.8
Q ss_pred hccceeeccCCCCcEEEcCCCCCC-CCc-----eeEEEE-CC-EEEEEeccCCCCCceeeEEEEECCCCceEe
Q 013909 95 LSATFADLPAPDLEWEQMPSAPVP-RLD-----GAAIQI-KN-LFYVFAGYGSLDYVHSHVDVYNFTDNKWVD 159 (434)
Q Consensus 95 ~~~~~~~~~~~~~~W~~~~~~p~~-R~~-----~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 159 (434)
-.+.+..||..+-+=+.--.+|.. |.. +..... ++ .+||+- ..+..+|-+.|.+.++--.
T Consensus 65 RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N-----~TPa~SVtVVDl~~~kvv~ 132 (342)
T PF06433_consen 65 RTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQN-----FTPATSVTVVDLAAKKVVG 132 (342)
T ss_dssp EEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEE-----ESSSEEEEEEETTTTEEEE
T ss_pred ceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEc-----cCCCCeEEEEECCCCceee
Confidence 345778888888743221223432 542 122222 33 566652 2245679999999998644
No 144
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=54.90 E-value=2.7e+02 Score=29.02 Aligned_cols=250 Identities=12% Similarity=0.087 Sum_probs=108.6
Q ss_pred eeecccccCCceEEecCCCCCccccceeeeEEEccCCcchhhhhccceeeccCCCCcEEEcCCCCCCCCceeEEEE-CCE
Q 013909 52 VASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQI-KNL 130 (434)
Q Consensus 52 ~~~~yd~~~~~W~~~~~~~~~r~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~-~~~ 130 (434)
.+|.|+|.. .|...+-+.-+. .++-.+.+-.+++ .-....++..+..+|+.+.+=..--+ +..-.=.+++.. .+.
T Consensus 48 ~IEiwN~~~-~w~~~~vi~g~~-drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~~lk~~~~~d-~~gg~IWsiai~p~~~ 123 (691)
T KOG2048|consen 48 NIEIWNLSN-NWFLEPVIHGPE-DRSIESLAWAEGG-RLFSSGLSGSITEWDLHTLKQKYNID-SNGGAIWSIAINPENT 123 (691)
T ss_pred cEEEEccCC-CceeeEEEecCC-CCceeeEEEccCC-eEEeecCCceEEEEecccCceeEEec-CCCcceeEEEeCCccc
Confidence 889999765 786654443322 2244455444222 22222334455555554432000000 000011111211 345
Q ss_pred EEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEE-EEeccCCCCCCCCCceeEEEECCCCce
Q 013909 131 FYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIY-IVSGQYGPQCRGPTSRTFVLDSETRKW 209 (434)
Q Consensus 131 iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~ly-v~GG~~~~~~~~~~~~~~~yd~~t~~W 209 (434)
+..+|-.++ .++.++...+.-+--..++....|- -....+.... ++||..+. .+-++|..+++=
T Consensus 124 ~l~IgcddG------vl~~~s~~p~~I~~~r~l~rq~sRv--Lslsw~~~~~~i~~Gs~Dg-------~Iriwd~~~~~t 188 (691)
T KOG2048|consen 124 ILAIGCDDG------VLYDFSIGPDKITYKRSLMRQKSRV--LSLSWNPTGTKIAGGSIDG-------VIRIWDVKSGQT 188 (691)
T ss_pred eEEeecCCc------eEEEEecCCceEEEEeecccccceE--EEEEecCCccEEEecccCc-------eEEEEEcCCCce
Confidence 556652222 2455566665544333343321231 1223344444 77775321 244566655442
Q ss_pred EecCCCC---CCc----ccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEE-
Q 013909 210 DSIPPLP---SPR----YSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVF- 281 (434)
Q Consensus 210 ~~~~~~p---~~r----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~- 281 (434)
-.+..|. ..+ .--++..+.+...+.|-.. ..+..||. ...+-.+.-..-.+.. .+.++-
T Consensus 189 ~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~-----G~V~FWd~-------~~gTLiqS~~~h~adV-l~Lav~~ 255 (691)
T KOG2048|consen 189 LHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSA-----GTVTFWDS-------IFGTLIQSHSCHDADV-LALAVAD 255 (691)
T ss_pred EEEeeecccccccCCceEEEEEEEeecCcEEEecCC-----ceEEEEcc-------cCcchhhhhhhhhcce-eEEEEcC
Confidence 2222221 111 1223335566666665433 45777773 2322111111111221 133333
Q ss_pred CCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CC--CCeEEcCCCC-CCCCccceeEEEECCEEEEEcCcC
Q 013909 282 NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DE--MKWKVLPPMP-KPNSHIECAWVIVNNSIIITGGTT 357 (434)
Q Consensus 282 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~--~~W~~~~~~p-~~r~~~~~~~~~~~~~i~v~GG~~ 357 (434)
++..++.+|.++. +..|- .+ ++|....+-- .++.- -++++.++ +++-||.+
T Consensus 256 ~~d~vfsaGvd~~----------------------ii~~~~~~~~~~wv~~~~r~~h~hdv--rs~av~~~-~l~sgG~d 310 (691)
T KOG2048|consen 256 NEDRVFSAGVDPK----------------------IIQYSLTTNKSEWVINSRRDLHAHDV--RSMAVIEN-ALISGGRD 310 (691)
T ss_pred CCCeEEEccCCCc----------------------eEEEEecCCccceeeeccccCCcccc--eeeeeecc-eEEeccee
Confidence 3355566676644 66665 32 3698765322 22221 14567776 77788866
Q ss_pred C
Q 013909 358 E 358 (434)
Q Consensus 358 ~ 358 (434)
.
T Consensus 311 ~ 311 (691)
T KOG2048|consen 311 F 311 (691)
T ss_pred e
Confidence 4
No 145
>PTZ00421 coronin; Provisional
Probab=54.51 E-value=2.5e+02 Score=28.56 Aligned_cols=102 Identities=11% Similarity=-0.033 Sum_probs=47.6
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceE-----ecCCCCCCCCceeeEEEEe--CCEEEEEeccCCCCCCCCCceeE
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWV-----DRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTF 200 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~-----~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~ 200 (434)
++.+++.|+.++ .+.+||..++... .+..+..- ...-.+++.. ++.+++.||.+ ..+.
T Consensus 87 d~~~LaSgS~Dg------tIkIWdi~~~~~~~~~~~~l~~L~gH-~~~V~~l~f~P~~~~iLaSgs~D--------gtVr 151 (493)
T PTZ00421 87 DPQKLFTASEDG------TIMGWGIPEEGLTQNISDPIVHLQGH-TKKVGIVSFHPSAMNVLASAGAD--------MVVN 151 (493)
T ss_pred CCCEEEEEeCCC------EEEEEecCCCccccccCcceEEecCC-CCcEEEEEeCcCCCCEEEEEeCC--------CEEE
Confidence 456777777653 3677777654321 11111110 0111122222 23567777643 3577
Q ss_pred EEECCCCceEe-cCCCCCCcccceEE-EECCEEEEEcCCCCCCCCCCcceEEE
Q 013909 201 VLDSETRKWDS-IPPLPSPRYSPATQ-LWRGRLHVMGGSKENRHTPGLEHWSI 251 (434)
Q Consensus 201 ~yd~~t~~W~~-~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~ 251 (434)
+||..+.+-.. +...... -.++. .-++.+++.|+.+ ..+.+||+
T Consensus 152 IWDl~tg~~~~~l~~h~~~--V~sla~spdG~lLatgs~D-----g~IrIwD~ 197 (493)
T PTZ00421 152 VWDVERGKAVEVIKCHSDQ--ITSLEWNLDGSLLCTTSKD-----KKLNIIDP 197 (493)
T ss_pred EEECCCCeEEEEEcCCCCc--eEEEEEECCCCEEEEecCC-----CEEEEEEC
Confidence 88888764321 1111111 11122 2366777777654 34566763
No 146
>PTZ00421 coronin; Provisional
Probab=54.04 E-value=2.6e+02 Score=28.51 Aligned_cols=13 Identities=8% Similarity=0.284 Sum_probs=9.5
Q ss_pred CCEEEEEcCCCCC
Q 013909 282 NDRLFVVGGQEGD 294 (434)
Q Consensus 282 ~~~iyv~GG~~~~ 294 (434)
++.+++.|+.++.
T Consensus 179 dG~lLatgs~Dg~ 191 (493)
T PTZ00421 179 DGSLLCTTSKDKK 191 (493)
T ss_pred CCCEEEEecCCCE
Confidence 7788888886643
No 147
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=53.96 E-value=1.7e+02 Score=26.51 Aligned_cols=129 Identities=22% Similarity=0.328 Sum_probs=69.3
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe--CCEEEEEeccCCCCCCCCCceeEEEECC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~ 205 (434)
.|.|+..||.. .+++.|.++++.++.-.-.. -+-|+++.- +++|+ -|+.++ .+-.+|..
T Consensus 126 enSi~~AgGD~-------~~y~~dlE~G~i~r~~rGHt---DYvH~vv~R~~~~qil-sG~EDG--------tvRvWd~k 186 (325)
T KOG0649|consen 126 ENSILFAGGDG-------VIYQVDLEDGRIQREYRGHT---DYVHSVVGRNANGQIL-SGAEDG--------TVRVWDTK 186 (325)
T ss_pred CCcEEEecCCe-------EEEEEEecCCEEEEEEcCCc---ceeeeeeecccCccee-ecCCCc--------cEEEEecc
Confidence 67888888642 48999999999876533222 345666653 33433 455433 35567887
Q ss_pred CCceEec-CC-----CCCCcccc--eEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCcee
Q 013909 206 TRKWDSI-PP-----LPSPRYSP--ATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRA 277 (434)
Q Consensus 206 t~~W~~~-~~-----~p~~r~~~--~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~ 277 (434)
|.+-..+ .+ ...|..+- .+...+..-.|.||- +....|.+- ..+=+.+-|+|...+
T Consensus 187 t~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG------p~lslwhLr-------sse~t~vfpipa~v~--- 250 (325)
T KOG0649|consen 187 TQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG------PKLSLWHLR-------SSESTCVFPIPARVH--- 250 (325)
T ss_pred ccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC------CceeEEecc-------CCCceEEEeccccee---
Confidence 7776544 22 11221221 233445556666664 234466642 333344455665443
Q ss_pred EEEECCEEEEEcCC
Q 013909 278 CFVFNDRLFVVGGQ 291 (434)
Q Consensus 278 ~~~~~~~iyv~GG~ 291 (434)
-+.+.++..++||.
T Consensus 251 ~v~F~~d~vl~~G~ 264 (325)
T KOG0649|consen 251 LVDFVDDCVLIGGE 264 (325)
T ss_pred EeeeecceEEEecc
Confidence 34555555555553
No 148
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=53.03 E-value=3.3e+02 Score=29.49 Aligned_cols=35 Identities=11% Similarity=0.275 Sum_probs=23.7
Q ss_pred eeEEEECCEEEEEeccCCCCCceeeEEEEECCCCc--eEecCCC
Q 013909 122 GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDM 163 (434)
Q Consensus 122 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~ 163 (434)
.+-+++++.||+.... +.++.+|..|.+ |+.-+..
T Consensus 188 ~TPlvvgg~lYv~t~~-------~~V~ALDa~TGk~lW~~d~~~ 224 (764)
T TIGR03074 188 ATPLKVGDTLYLCTPH-------NKVIALDAATGKEKWKFDPKL 224 (764)
T ss_pred cCCEEECCEEEEECCC-------CeEEEEECCCCcEEEEEcCCC
Confidence 4456779999997432 348888888764 8764443
No 149
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=52.78 E-value=1.9e+02 Score=26.54 Aligned_cols=208 Identities=17% Similarity=0.254 Sum_probs=94.8
Q ss_pred EEEeCCEEEE--Eecc-CCCCCCCCCceeEEEECC-CCceEec---CC----CCC-CcccceEEEECCEEEEEcCCC--C
Q 013909 174 VVSDGRYIYI--VSGQ-YGPQCRGPTSRTFVLDSE-TRKWDSI---PP----LPS-PRYSPATQLWRGRLHVMGGSK--E 239 (434)
Q Consensus 174 ~~~~~~~lyv--~GG~-~~~~~~~~~~~~~~yd~~-t~~W~~~---~~----~p~-~r~~~~~~~~~~~iyv~GG~~--~ 239 (434)
+.+.++-||. ++|. .+- ..+.-.|+=... -++|+.- .+ -|. .-..+++.++++++|.+=-.. .
T Consensus 21 aFVy~~VIYAPfM~~~RHGv---~~LhvaWVkSgDdG~TWttPEwLtd~H~~yptvnyHCmSMGv~~NRLfa~iEtR~~a 97 (367)
T PF12217_consen 21 AFVYDNVIYAPFMAGDRHGV---DNLHVAWVKSGDDGQTWTTPEWLTDLHPDYPTVNYHCMSMGVVGNRLFAVIETRTVA 97 (367)
T ss_dssp -EEETTEEEEEEEEESSSSS---TT-EEEEEEESSTTSS----EESS---TTTTTEEEE-B-EEEETTEEEEEEEEEETT
T ss_pred ceeecCeeecccccccccCc---cceEEEEEEecCCCCcccCchhhhhcCCCCCccceeeeeeeeecceeeEEEeehhhh
Confidence 5677888874 3442 222 224445544433 4568653 22 222 123456778999999763211 1
Q ss_pred CCCCCCcceEEEEeeccccccCceEE--ccCCCC-------CCCceeEEEECCEEEEEcCCCCCCCCCCCCCcccccccc
Q 013909 240 NRHTPGLEHWSIAVKDGKALEKAWRT--EIPIPR-------GGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRH 310 (434)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~W~~--~~~~p~-------~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~ 310 (434)
.......+.|+--++ ....|+. ++.+|. ...-|+.+.+++.=|.+|=.+++.. .
T Consensus 98 ~~km~~~~Lw~RpMF----~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~s----------P--- 160 (367)
T PF12217_consen 98 SNKMVRAELWSRPMF----HDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVS----------P--- 160 (367)
T ss_dssp T--EEEEEEEEEE-S----TTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SSS----------S---
T ss_pred hhhhhhhhhhccccc----ccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCCC----------c---
Confidence 111223445554332 3567765 333443 2334678888888889997776632 1
Q ss_pred ceeeCcEEEeC----CCCCeE-EcCCCCCCCCccceeEEEECCEEEEEc-CcCCCCCCccceeeeccEEEEECCCCceEE
Q 013909 311 EVVYGDVYMLD----DEMKWK-VLPPMPKPNSHIECAWVIVNNSIIITG-GTTEKHPMTKRMILVGEVFQFHLDSLTWSV 384 (434)
Q Consensus 311 ~~~~~~v~~yd----~~~~W~-~~~~~p~~r~~~~~~~~~~~~~i~v~G-G~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 384 (434)
.-+.-++.-| +...-. .++.- ..+...--|+-..+|.||+.- |..... .-..+.+=+.....|+.
T Consensus 161 -Re~G~~yfs~~~~sp~~~vrr~i~se-y~~~AsEPCvkyY~g~LyLtTRgt~~~~-------~GS~L~rs~d~G~~w~s 231 (367)
T PF12217_consen 161 -RELGFLYFSDAFASPGVFVRRIIPSE-YERNASEPCVKYYDGVLYLTTRGTLPTN-------PGSSLHRSDDNGQNWSS 231 (367)
T ss_dssp --EEEEEEETTTTT-TT--EEEE--GG-G-TTEEEEEEEEETTEEEEEEEES-TTS----------EEEEESSTTSS-EE
T ss_pred -ceeeEEEecccccCCcceeeeechhh-hccccccchhhhhCCEEEEEEcCcCCCC-------CcceeeeecccCCchhh
Confidence 1223344333 222222 23321 223322335567899999975 333222 22356666777788998
Q ss_pred eccCCCceee--eeeEEECCEEEEEcccc
Q 013909 385 IGKLPYRIKT--TLTGFWDGWLYFTSGQR 411 (434)
Q Consensus 385 ~~~lp~~r~~--~~~~~~~~~l~v~GG~~ 411 (434)
+ .+|..... .-.+.+++.||+||-+.
T Consensus 232 l-rfp~nvHhtnlPFakvgD~l~mFgsER 259 (367)
T PF12217_consen 232 L-RFPNNVHHTNLPFAKVGDVLYMFGSER 259 (367)
T ss_dssp E-E-TT---SS---EEEETTEEEEEEE-S
T ss_pred c-cccccccccCCCceeeCCEEEEEeccc
Confidence 7 45544433 34567899999999543
No 150
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=52.01 E-value=2.5e+02 Score=27.72 Aligned_cols=115 Identities=14% Similarity=0.153 Sum_probs=55.5
Q ss_pred CCcEEEcCCCCCCC-CceeEEEE---CCEEEEEeccCCCCCceeeEEEEECCCCceEecCC-C-C-CCCCceeeEEEEeC
Q 013909 106 DLEWEQMPSAPVPR-LDGAAIQI---KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFD-M-P-KDMAHSHLGVVSDG 178 (434)
Q Consensus 106 ~~~W~~~~~~p~~R-~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~-~-~-~~~~r~~~~~~~~~ 178 (434)
..+|+++.....+- .-..+... .+.-+++|-.. .+..=+=.-++|+.... . . .+......++...+
T Consensus 74 G~~W~q~~~p~~~~~~L~~V~F~~~d~~~GwAVG~~G-------~IL~T~DGG~tW~~~~~~~~~~~~~~~~l~~v~f~~ 146 (398)
T PLN00033 74 SSEWEQVDLPIDPGVVLLDIAFVPDDPTHGFLLGTRQ-------TLLETKDGGKTWVPRSIPSAEDEDFNYRFNSISFKG 146 (398)
T ss_pred CCccEEeecCCCCCCceEEEEeccCCCCEEEEEcCCC-------EEEEEcCCCCCceECccCcccccccccceeeeEEEC
Confidence 34899885333332 33344432 23788887532 12222333458987531 1 1 11112234556667
Q ss_pred CEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCC-CCcccceEEEE-CCEEEEEcC
Q 013909 179 RYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP-SPRYSPATQLW-RGRLHVMGG 236 (434)
Q Consensus 179 ~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p-~~r~~~~~~~~-~~~iyv~GG 236 (434)
+.+|++|-. ..++.=+-.-.+|+.++..+ .+......... ++.++++|.
T Consensus 147 ~~g~~vG~~---------G~il~T~DgG~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg~ 197 (398)
T PLN00033 147 KEGWIIGKP---------AILLHTSDGGETWERIPLSPKLPGEPVLIKATGPKSAEMVTD 197 (398)
T ss_pred CEEEEEcCc---------eEEEEEcCCCCCceECccccCCCCCceEEEEECCCceEEEec
Confidence 889988531 12222233346899885422 11122233333 456777763
No 151
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=50.36 E-value=15 Score=33.36 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=24.5
Q ss_pred CCceeEEEE--CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCC
Q 013909 119 RLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK 165 (434)
Q Consensus 119 R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~ 165 (434)
+.+-+-+.+ ++||+...|+++.- .+|+ |+.+.|+..
T Consensus 251 npGv~gvrIRpD~KIlATAGWD~Ri------RVys-----wrtl~pLAV 288 (323)
T KOG0322|consen 251 NPGVSGVRIRPDGKILATAGWDHRI------RVYS-----WRTLNPLAV 288 (323)
T ss_pred CCCccceEEccCCcEEeecccCCcE------EEEE-----eccCCchhh
Confidence 344444444 89999999998654 4444 888877754
No 152
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=49.31 E-value=2.5e+02 Score=27.09 Aligned_cols=104 Identities=9% Similarity=-0.019 Sum_probs=51.3
Q ss_pred eeeecccccCCceEE-ecCCCCCccccceeeeEEEccCC---cchhhhhccceeeccCCCCcEE-EcCCCCCCCCc----
Q 013909 51 SVASNWALEKSGVVV-IPHVNATKIDRQRESVAVIDKKG---QDAERFLSATFADLPAPDLEWE-QMPSAPVPRLD---- 121 (434)
Q Consensus 51 ~~~~~yd~~~~~W~~-~~~~~~~r~~~~~~g~~v~~~~~---~~~~~~~~~~~~~~~~~~~~W~-~~~~~p~~R~~---- 121 (434)
+.+..+|.++.+-.. ++.-..||.--+..+..++.-.. ......-.+.+..+|.++.+=. +++..+.||..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~ 106 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTY 106 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCc
Confidence 788899988765432 33333333111111222221111 1111113357889999887543 23333344521
Q ss_pred --eeEEEECC-EEEEEeccCCCCCceeeEEEEECCCCceEe
Q 013909 122 --GAAIQIKN-LFYVFAGYGSLDYVHSHVDVYNFTDNKWVD 159 (434)
Q Consensus 122 --~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 159 (434)
..+..-++ .+||. -.+ ..+.+-+.|..+++-..
T Consensus 107 ~~~~~ls~dgk~l~V~-n~~----p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 107 PWMTSLTPDNKTLLFY-QFS----PSPAVGVVDLEGKAFVR 142 (352)
T ss_pred cceEEECCCCCEEEEe-cCC----CCCEEEEEECCCCcEEE
Confidence 22222344 57765 222 24568999999987643
No 153
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.90 E-value=2.3e+02 Score=26.59 Aligned_cols=36 Identities=17% Similarity=0.517 Sum_probs=21.3
Q ss_pred EEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccCC
Q 013909 349 SIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKLP 389 (434)
Q Consensus 349 ~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~lp 389 (434)
.++++|-.+ ...... ...+|.|+-..++|..+..||
T Consensus 185 p~iAvgs~e-~a~~~~----~~~Iye~~e~~rKw~kva~L~ 220 (361)
T KOG2445|consen 185 PLIAVGSDE-DAPHLN----KVKIYEYNENGRKWLKVAELP 220 (361)
T ss_pred ceEEEEccc-CCcccc----ceEEEEecCCcceeeeehhcC
Confidence 466666544 222111 125677777778999987654
No 154
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=48.31 E-value=3e+02 Score=27.60 Aligned_cols=188 Identities=10% Similarity=0.117 Sum_probs=93.2
Q ss_pred eeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceE
Q 013909 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPAT 224 (434)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~ 224 (434)
.+++.++.+.++=.+++-... +-...+.-.-++.|.|.--.. +.+.....++..+.....-. +++ ..-.+.
T Consensus 107 aDly~v~~e~Ge~kRiTyfGr--~fT~VaG~~~dg~iiV~TD~~--tPF~q~~~lYkv~~dg~~~e---~Ln--lGpath 177 (668)
T COG4946 107 ADLYVVPSEDGEAKRITYFGR--RFTRVAGWIPDGEIIVSTDFH--TPFSQWTELYKVNVDGIKTE---PLN--LGPATH 177 (668)
T ss_pred ccEEEEeCCCCcEEEEEEecc--ccceeeccCCCCCEEEEeccC--CCcccceeeeEEccCCceee---ecc--CCceee
Confidence 468889988888777655532 112222223366666653221 11111122222222111112 222 222233
Q ss_pred EEECCEEEEEcCCCC-----CCC--CCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCC
Q 013909 225 QLWRGRLHVMGGSKE-----NRH--TPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMA 297 (434)
Q Consensus 225 ~~~~~~iyv~GG~~~-----~~~--~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~ 297 (434)
.+..+-+.|+|-..- .+| -.....|.-. ....+..+...++...+ +-+.+++++|.+--..+.+
T Consensus 178 iv~~dg~ivigRntydLP~WK~YkGGtrGklWis~-----d~g~tFeK~vdl~~~vS--~PmIV~~RvYFlsD~eG~G-- 248 (668)
T COG4946 178 IVIKDGIIVIGRNTYDLPHWKGYKGGTRGKLWISS-----DGGKTFEKFVDLDGNVS--SPMIVGERVYFLSDHEGVG-- 248 (668)
T ss_pred EEEeCCEEEEccCcccCcccccccCCccceEEEEe-----cCCcceeeeeecCCCcC--CceEEcceEEEEecccCcc--
Confidence 344444666663211 001 1122344321 12225556666665554 5567899999998776654
Q ss_pred CCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEE
Q 013909 298 KPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFH 376 (434)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd 376 (434)
.+|.-| ..+.-++..+...--.+| +..+|+-+||--. .++|.||
T Consensus 249 ------------------nlYSvdldGkDlrrHTnFtdYY~R~----~nsDGkrIvFq~~-------------GdIylyd 293 (668)
T COG4946 249 ------------------NLYSVDLDGKDLRRHTNFTDYYPRN----ANSDGKRIVFQNA-------------GDIYLYD 293 (668)
T ss_pred ------------------ceEEeccCCchhhhcCCchhccccc----cCCCCcEEEEecC-------------CcEEEeC
Confidence 377777 555444433322111122 3456665555311 2899999
Q ss_pred CCCCceEEe
Q 013909 377 LDSLTWSVI 385 (434)
Q Consensus 377 ~~~~~W~~~ 385 (434)
|+++.-+.+
T Consensus 294 P~td~lekl 302 (668)
T COG4946 294 PETDSLEKL 302 (668)
T ss_pred CCcCcceee
Confidence 999998886
No 155
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=46.86 E-value=2.7e+02 Score=26.75 Aligned_cols=55 Identities=18% Similarity=0.321 Sum_probs=30.0
Q ss_pred CCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCC
Q 013909 228 RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGD 294 (434)
Q Consensus 228 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~ 294 (434)
+..+.+.||-+. ....|++ .+..|--..+--...-......+++.+++.|+.++.
T Consensus 75 ~~~l~aTGGgDD-----~AflW~~-------~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~ 129 (399)
T KOG0296|consen 75 NNNLVATGGGDD-----LAFLWDI-------STGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGK 129 (399)
T ss_pred CCceEEecCCCc-----eEEEEEc-------cCCcceeEecCCCCceEEEEEccCceEEEecCCCcc
Confidence 567777887653 3456663 234332211111111112334569999999998875
No 156
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=46.06 E-value=3.2e+02 Score=27.37 Aligned_cols=97 Identities=5% Similarity=0.070 Sum_probs=56.8
Q ss_pred ceeeccCCCCcEEEcCCCCCCCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe
Q 013909 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD 177 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~ 177 (434)
.+|.-.....+.+++-+|+..-+.. +.++++||.+.-.++.+. ++.-|+..+.-++-++...--+|. +-.
T Consensus 207 klWis~d~g~tFeK~vdl~~~vS~P--mIV~~RvYFlsD~eG~Gn----lYSvdldGkDlrrHTnFtdYY~R~----~ns 276 (668)
T COG4946 207 KLWISSDGGKTFEKFVDLDGNVSSP--MIVGERVYFLSDHEGVGN----LYSVDLDGKDLRRHTNFTDYYPRN----ANS 276 (668)
T ss_pred eEEEEecCCcceeeeeecCCCcCCc--eEEcceEEEEecccCccc----eEEeccCCchhhhcCCchhccccc----cCC
Confidence 3444433344566666666544443 445999999988777664 666677776655544444311221 223
Q ss_pred CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecC
Q 013909 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP 213 (434)
Q Consensus 178 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~ 213 (434)
+++=.||-- .-++|.|||+++.-+++.
T Consensus 277 DGkrIvFq~---------~GdIylydP~td~lekld 303 (668)
T COG4946 277 DGKRIVFQN---------AGDIYLYDPETDSLEKLD 303 (668)
T ss_pred CCcEEEEec---------CCcEEEeCCCcCcceeee
Confidence 444444411 247899999998887763
No 157
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=45.69 E-value=44 Score=20.30 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=16.5
Q ss_pred EEEEeCCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 173 GVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 173 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
+.++.++.||+.+. ...++++|++|
T Consensus 16 ~~~v~~g~vyv~~~---------dg~l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVGTG---------DGNLYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE-T---------TSEEEEEETT-
T ss_pred CCEEECCEEEEEcC---------CCEEEEEeCCC
Confidence 44778899998654 35788999864
No 158
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=43.63 E-value=1.2e+02 Score=28.81 Aligned_cols=58 Identities=24% Similarity=0.402 Sum_probs=34.5
Q ss_pred ceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCC-CeEEcCCCCCCCCccceeEEEECCEEEE
Q 013909 275 HRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEM-KWKVLPPMPKPNSHIECAWVIVNNSIII 352 (434)
Q Consensus 275 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~-~W~~~~~~p~~r~~~~~~~~~~~~~i~v 352 (434)
+-++..++|++.|-|..+. ++-.+| ... .-+.+.... .-. ..+-.+++=+|
T Consensus 362 GIAClQYr~rlvVSGSSDn----------------------tIRlwdi~~G~cLRvLeGHE---eLv--RciRFd~krIV 414 (499)
T KOG0281|consen 362 GIACLQYRDRLVVSGSSDN----------------------TIRLWDIECGACLRVLEGHE---ELV--RCIRFDNKRIV 414 (499)
T ss_pred cceehhccCeEEEecCCCc----------------------eEEEEeccccHHHHHHhchH---Hhh--hheeecCceee
Confidence 4478889999999887543 355555 332 222222110 011 12678889999
Q ss_pred EcCcCCC
Q 013909 353 TGGTTEK 359 (434)
Q Consensus 353 ~GG~~~~ 359 (434)
-||+++.
T Consensus 415 SGaYDGk 421 (499)
T KOG0281|consen 415 SGAYDGK 421 (499)
T ss_pred eccccce
Confidence 9998864
No 159
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.50 E-value=1.1e+02 Score=27.77 Aligned_cols=103 Identities=16% Similarity=0.218 Sum_probs=55.0
Q ss_pred EEEEEeccCCCCCCCCCceeEEEECCCCceEec----------------CCCCCCcccceEEEECCEEEEEcCCCCCCCC
Q 013909 180 YIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSI----------------PPLPSPRYSPATQLWRGRLHVMGGSKENRHT 243 (434)
Q Consensus 180 ~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~----------------~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 243 (434)
+=++-||++. +=.+|.||- .+|..- |....++...+.+.-+++++|.--.
T Consensus 176 krlvSgGcDn------~VkiW~~~~--~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~------ 241 (299)
T KOG1332|consen 176 KRLVSGGCDN------LVKIWKFDS--DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD------ 241 (299)
T ss_pred ceeeccCCcc------ceeeeecCC--cchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec------
Confidence 4467788654 345666654 355432 2233566666677777777777211
Q ss_pred CCcceEEEEeeccccccCceEE--ccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC
Q 013909 244 PGLEHWSIAVKDGKALEKAWRT--EIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD 321 (434)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~W~~--~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 321 (434)
...+.|+. +.+.|....+.+-...++-+-|-||.+.- .+|.=+
T Consensus 242 --------------~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkv---------------------tlwke~ 286 (299)
T KOG1332|consen 242 --------------EEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKV---------------------TLWKEN 286 (299)
T ss_pred --------------CccCcccccccccCCcceEEEEEeccccEEEEecCCcEE---------------------EEEEeC
Confidence 12455644 44566655543333345555555554321 244444
Q ss_pred CCCCeEEcCC
Q 013909 322 DEMKWKVLPP 331 (434)
Q Consensus 322 ~~~~W~~~~~ 331 (434)
...+|++++.
T Consensus 287 ~~Gkw~~v~~ 296 (299)
T KOG1332|consen 287 VDGKWEEVGE 296 (299)
T ss_pred CCCcEEEccc
Confidence 5569998864
No 160
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=41.92 E-value=3.7e+02 Score=26.91 Aligned_cols=89 Identities=11% Similarity=0.068 Sum_probs=46.3
Q ss_pred eEEEEECCCC-c-eEecCCCCCCCCceeeEEEE-eCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccc
Q 013909 146 HVDVYNFTDN-K-WVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSP 222 (434)
Q Consensus 146 ~v~~yd~~t~-~-W~~~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~ 222 (434)
.+.++|...+ . -..+..... .. ++++. ..+.+++.|+.+ ..+..+|..+.+-.+.=..-......
T Consensus 226 tiriwd~~~~~~~~~~l~gH~~--~v--~~~~f~p~g~~i~Sgs~D--------~tvriWd~~~~~~~~~l~~hs~~is~ 293 (456)
T KOG0266|consen 226 TLRIWDLKDDGRNLKTLKGHST--YV--TSVAFSPDGNLLVSGSDD--------GTVRIWDVRTGECVRKLKGHSDGISG 293 (456)
T ss_pred eEEEeeccCCCeEEEEecCCCC--ce--EEEEecCCCCEEEEecCC--------CcEEEEeccCCeEEEeeeccCCceEE
Confidence 3788888444 2 233333333 23 33333 244788888754 45778888885543332211222222
Q ss_pred eEEEECCEEEEEcCCCCCCCCCCcceEEE
Q 013909 223 ATQLWRGRLHVMGGSKENRHTPGLEHWSI 251 (434)
Q Consensus 223 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 251 (434)
.+..-++.+++.+.+ ...+.+||+
T Consensus 294 ~~f~~d~~~l~s~s~-----d~~i~vwd~ 317 (456)
T KOG0266|consen 294 LAFSPDGNLLVSASY-----DGTIRVWDL 317 (456)
T ss_pred EEECCCCCEEEEcCC-----CccEEEEEC
Confidence 223346677777644 345677773
No 161
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=41.11 E-value=1.9e+02 Score=28.06 Aligned_cols=76 Identities=21% Similarity=0.222 Sum_probs=38.3
Q ss_pred eeEEEEECCCCce-EecCCCCCCCCceeeEEEE--eCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCccc
Q 013909 145 SHVDVYNFTDNKW-VDRFDMPKDMAHSHLGVVS--DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYS 221 (434)
Q Consensus 145 ~~v~~yd~~t~~W-~~~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~ 221 (434)
+++.+.|..+++= .+++... ..+...+. .+.++|+.+. + ..+-.+|+.+.+ .+...+.....
T Consensus 16 ~~v~viD~~t~~~~~~i~~~~----~~h~~~~~s~Dgr~~yv~~r-d--------g~vsviD~~~~~--~v~~i~~G~~~ 80 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTGG----APHAGLKFSPDGRYLYVANR-D--------GTVSVIDLATGK--VVATIKVGGNP 80 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-ST----TEEEEEE-TT-SSEEEEEET-T--------SEEEEEETTSSS--EEEEEE-SSEE
T ss_pred CEEEEEECCCCeEEEEEcCCC----CceeEEEecCCCCEEEEEcC-C--------CeEEEEECCccc--EEEEEecCCCc
Confidence 4688999988763 3333322 12222333 2467999753 1 368899999887 33333333333
Q ss_pred ceEE-EECCEEEEEc
Q 013909 222 PATQ-LWRGRLHVMG 235 (434)
Q Consensus 222 ~~~~-~~~~~iyv~G 235 (434)
..++ .-+++..+.+
T Consensus 81 ~~i~~s~DG~~~~v~ 95 (369)
T PF02239_consen 81 RGIAVSPDGKYVYVA 95 (369)
T ss_dssp EEEEE--TTTEEEEE
T ss_pred ceEEEcCCCCEEEEE
Confidence 3333 3355544444
No 162
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=40.12 E-value=3.1e+02 Score=25.51 Aligned_cols=219 Identities=11% Similarity=0.081 Sum_probs=104.4
Q ss_pred ceeeccCCCCcEEEcCCCCCCCCceeEEEE-CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEE
Q 013909 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS 176 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~ 176 (434)
.+-.+|+.+++-++. ++++.-+-|.+++- ++..++.-+ .. -+-++|+++.+-++.+ +|...+-...-.++
T Consensus 84 aiGhLdP~tGev~~y-pLg~Ga~Phgiv~gpdg~~Witd~------~~-aI~R~dpkt~evt~f~-lp~~~a~~nlet~v 154 (353)
T COG4257 84 AIGHLDPATGEVETY-PLGSGASPHGIVVGPDGSAWITDT------GL-AIGRLDPKTLEVTRFP-LPLEHADANLETAV 154 (353)
T ss_pred cceecCCCCCceEEE-ecCCCCCCceEEECCCCCeeEecC------cc-eeEEecCcccceEEee-cccccCCCccccee
Confidence 455677777775554 34443333443332 445555422 11 4788999887765542 22222222333334
Q ss_pred e--CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccce-EEEECCEEEEEcCCCCCCCCCCcceEEEEe
Q 013909 177 D--GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPA-TQLWRGRLHVMGGSKENRHTPGLEHWSIAV 253 (434)
Q Consensus 177 ~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~ 253 (434)
. .+.|+..|-....+ ++||.++.-+..+ .|..-.-.. ++.-++.+|+..=.. +..-..|
T Consensus 155 fD~~G~lWFt~q~G~yG---------rLdPa~~~i~vfp-aPqG~gpyGi~atpdGsvwyaslag-----naiarid--- 216 (353)
T COG4257 155 FDPWGNLWFTGQIGAYG---------RLDPARNVISVFP-APQGGGPYGICATPDGSVWYASLAG-----NAIARID--- 216 (353)
T ss_pred eCCCccEEEeeccccce---------ecCcccCceeeec-cCCCCCCcceEECCCCcEEEEeccc-----cceEEcc---
Confidence 3 46788776321111 4667666543332 232222222 334577888762111 1111111
Q ss_pred eccccccCceEEccCCCCCCC---ceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEc
Q 013909 254 KDGKALEKAWRTEIPIPRGGP---HRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVL 329 (434)
Q Consensus 254 ~~~~~~~~~W~~~~~~p~~~~---~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~ 329 (434)
|.+.. .++-+.|.... .-.-+---+++++.--. ...+++|| ....|.+-
T Consensus 217 ----p~~~~-aev~p~P~~~~~gsRriwsdpig~~wittwg----------------------~g~l~rfdPs~~sW~ey 269 (353)
T COG4257 217 ----PFAGH-AEVVPQPNALKAGSRRIWSDPIGRAWITTWG----------------------TGSLHRFDPSVTSWIEY 269 (353)
T ss_pred ----cccCC-cceecCCCcccccccccccCccCcEEEeccC----------------------CceeeEeCcccccceee
Confidence 32321 12222232211 00112235667765211 23599999 55689875
Q ss_pred CCCC--CCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEe
Q 013909 330 PPMP--KPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVI 385 (434)
Q Consensus 330 ~~~p--~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 385 (434)
+ +| .+|.. ..-+-..+++++--- -.+.+-+||+++.+++.+
T Consensus 270 p-LPgs~arpy--s~rVD~~grVW~sea------------~agai~rfdpeta~ftv~ 312 (353)
T COG4257 270 P-LPGSKARPY--SMRVDRHGRVWLSEA------------DAGAIGRFDPETARFTVL 312 (353)
T ss_pred e-CCCCCCCcc--eeeeccCCcEEeecc------------ccCceeecCcccceEEEe
Confidence 3 33 33332 211333456665221 124689999999999886
No 163
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=38.74 E-value=4e+02 Score=26.35 Aligned_cols=122 Identities=9% Similarity=0.213 Sum_probs=62.5
Q ss_pred eeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEE-CCEEEEEcCCCCCCCCCCcc
Q 013909 170 SHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW-RGRLHVMGGSKENRHTPGLE 247 (434)
Q Consensus 170 ~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~ 247 (434)
..+++++. ++-|+..|-. -..+-+||..+.. .++..|..-.--..+.+ +|-.|++-+.+. ..+.
T Consensus 349 ~~ts~~fHpDgLifgtgt~--------d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add----~~V~ 414 (506)
T KOG0289|consen 349 EYTSAAFHPDGLIFGTGTP--------DGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADD----GSVK 414 (506)
T ss_pred eeEEeeEcCCceEEeccCC--------CceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecC----CeEE
Confidence 34555665 5555554432 2457788988766 56666642222222322 344444444332 2377
Q ss_pred eEEEEeeccccccCceEEccCCCCCCCceeEEEE--CCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCC
Q 013909 248 HWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVF--NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEM 324 (434)
Q Consensus 248 ~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~ 324 (434)
+||+. +....... +++... ......+ .|+.++++|.+- .||.|+ .+.
T Consensus 415 lwDLR------Kl~n~kt~-~l~~~~-~v~s~~fD~SGt~L~~~g~~l----------------------~Vy~~~k~~k 464 (506)
T KOG0289|consen 415 LWDLR------KLKNFKTI-QLDEKK-EVNSLSFDQSGTYLGIAGSDL----------------------QVYICKKKTK 464 (506)
T ss_pred EEEeh------hhccccee-eccccc-cceeEEEcCCCCeEEeeccee----------------------EEEEEecccc
Confidence 88863 12111111 122221 1122233 577777876542 377887 778
Q ss_pred CeEEcCCCCCC
Q 013909 325 KWKVLPPMPKP 335 (434)
Q Consensus 325 ~W~~~~~~p~~ 335 (434)
+|+.+..++..
T Consensus 465 ~W~~~~~~~~~ 475 (506)
T KOG0289|consen 465 SWTEIKELADH 475 (506)
T ss_pred cceeeehhhhc
Confidence 99998766543
No 164
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=38.61 E-value=3.1e+02 Score=24.96 Aligned_cols=184 Identities=17% Similarity=0.222 Sum_probs=96.2
Q ss_pred CCEEEEEeccCCCCCceeeEEEEEC----CCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEE
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNF----TDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLD 203 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~----~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd 203 (434)
++++|++.+..+ ..+..|.. ....|...-.+|. +-.+.+-++.++.+|.-.. .+..+-+||
T Consensus 30 ~~r~~~~~~~~~-----~~l~E~~~~~~~~~~~~~~~~~lp~--~~~gTg~VVynGs~yynk~--------~t~~ivky~ 94 (249)
T KOG3545|consen 30 DDRIYVMNYFDG-----LMLTEYTNLEDFKRGRKAEKYRLPY--SWDGTGHVVYNGSLYYNKA--------GTRNIIKYD 94 (249)
T ss_pred cCceEEeccccC-----ceEEEeccHHHhhccCcceEEeCCC--CccccceEEEcceEEeecc--------CCcceEEEE
Confidence 778999844432 23555554 2334555555665 4456667889999987643 146788899
Q ss_pred CCCCc---eEecCCCC------C---CcccceEEEECCEEEEEcCCCCCCC---CCCcceEEEEeeccccccCceEEccC
Q 013909 204 SETRK---WDSIPPLP------S---PRYSPATQLWRGRLHVMGGSKENRH---TPGLEHWSIAVKDGKALEKAWRTEIP 268 (434)
Q Consensus 204 ~~t~~---W~~~~~~p------~---~r~~~~~~~~~~~iyv~GG~~~~~~---~~~~~~~~~~~~~~~~~~~~W~~~~~ 268 (434)
..+.. |..++.+- - +....-.++..+-++|+=-..+... ...++...+ ....+|....+
T Consensus 95 l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv~skLdp~tl------~~e~tW~T~~~ 168 (249)
T KOG3545|consen 95 LETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIVLSKLDPETL------EVERTWNTTLP 168 (249)
T ss_pred eecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCcEEeeccCHHHh------heeeeeccccC
Confidence 98843 55554321 1 1112223444555666532221111 111111111 13456755433
Q ss_pred CCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEE--
Q 013909 269 IPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVI-- 345 (434)
Q Consensus 269 ~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~-- 345 (434)
-+... .+.++-|.+|++-......+ .--+.|| .+++= +..++|.+.....++++-
T Consensus 169 k~~~~---~aF~iCGvLY~v~S~~~~~~------------------~i~yaydt~~~~~-~~~~ipf~N~y~~~~~idYN 226 (249)
T KOG3545|consen 169 KRSAG---NAFMICGVLYVVHSYNCTHT------------------QISYAYDTTTGTQ-ERIDLPFPNPYSYATMIDYN 226 (249)
T ss_pred CCCcC---ceEEEeeeeEEEeccccCCc------------------eEEEEEEcCCCce-ecccccccchhhhhhccCCC
Confidence 33333 56677788999877664421 1237888 44544 334566665544433332
Q ss_pred -ECCEEEEEc
Q 013909 346 -VNNSIIITG 354 (434)
Q Consensus 346 -~~~~i~v~G 354 (434)
.+.++|++-
T Consensus 227 P~D~~LY~wd 236 (249)
T KOG3545|consen 227 PRDRRLYAWD 236 (249)
T ss_pred cccceeeEec
Confidence 245777764
No 165
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=37.40 E-value=4.2e+02 Score=26.21 Aligned_cols=53 Identities=9% Similarity=0.127 Sum_probs=32.5
Q ss_pred CCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccCCCceeeeeeEEECC--EEEEEcccc
Q 013909 347 NNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKLPYRIKTTLTGFWDG--WLYFTSGQR 411 (434)
Q Consensus 347 ~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~--~l~v~GG~~ 411 (434)
.|+.++++|.+ -.||.|+-.++.|+.+..++....-..++.++. +++.-||++
T Consensus 443 SGt~L~~~g~~------------l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd 497 (506)
T KOG0289|consen 443 SGTYLGIAGSD------------LQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMD 497 (506)
T ss_pred CCCeEEeecce------------eEEEEEecccccceeeehhhhcccccceeeecccceEEeeccch
Confidence 35666677633 267888888999999877655443444555543 444445543
No 166
>PRK01742 tolB translocation protein TolB; Provisional
Probab=37.04 E-value=4.3e+02 Score=26.16 Aligned_cols=79 Identities=13% Similarity=0.071 Sum_probs=37.1
Q ss_pred CCEE-EEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 128 KNLF-YVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 128 ~~~i-yv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
+.+| |+..-.++ . ...++++.|.....=..+..... .-......-.+.+|. +...... ...++.+|..+
T Consensus 168 ~~ria~v~~~~~~-~-~~~~i~i~d~dg~~~~~lt~~~~--~v~~p~wSPDG~~la-~~s~~~~-----~~~i~i~dl~t 237 (429)
T PRK01742 168 RTRIAYVVQKNGG-S-QPYEVRVADYDGFNQFIVNRSSQ--PLMSPAWSPDGSKLA-YVSFENK-----KSQLVVHDLRS 237 (429)
T ss_pred CCEEEEEEEEcCC-C-ceEEEEEECCCCCCceEeccCCC--ccccceEcCCCCEEE-EEEecCC-----CcEEEEEeCCC
Confidence 4555 65532221 1 12468888876543222222111 112222222344454 3332211 25689999988
Q ss_pred CceEecCCCC
Q 013909 207 RKWDSIPPLP 216 (434)
Q Consensus 207 ~~W~~~~~~p 216 (434)
.+-+.+...+
T Consensus 238 g~~~~l~~~~ 247 (429)
T PRK01742 238 GARKVVASFR 247 (429)
T ss_pred CceEEEecCC
Confidence 7766665443
No 167
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=36.61 E-value=3.7e+02 Score=25.35 Aligned_cols=111 Identities=21% Similarity=0.229 Sum_probs=62.1
Q ss_pred CCCCCceeEEEE--CCEEEEEeccCCCCCceeeEEEEECCCCceE-ecCCCCCCCCceeeEEEEeC-CEEEEEeccCCCC
Q 013909 116 PVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWV-DRFDMPKDMAHSHLGVVSDG-RYIYIVSGQYGPQ 191 (434)
Q Consensus 116 p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~-~~~~~~~~~~r~~~~~~~~~-~~lyv~GG~~~~~ 191 (434)
|.|-.+|+++.. ...+.+|+=+-+.. ..+||+.+.+=. .+.+ +...-.++|++..-+ ..||..=. .
T Consensus 2 ~lP~RgH~~a~~p~~~~avafaRRPG~~-----~~v~D~~~g~~~~~~~a-~~gRHFyGHg~fs~dG~~LytTEn----d 71 (305)
T PF07433_consen 2 PLPARGHGVAAHPTRPEAVAFARRPGTF-----ALVFDCRTGQLLQRLWA-PPGRHFYGHGVFSPDGRLLYTTEN----D 71 (305)
T ss_pred CCCccccceeeCCCCCeEEEEEeCCCcE-----EEEEEcCCCceeeEEcC-CCCCEEecCEEEcCCCCEEEEecc----c
Confidence 344455655555 46778887654432 788999998743 2333 222233456666654 45666422 2
Q ss_pred CCCCCceeEEEECCCCceEecCCCCC-CcccceEEEE-CC-EEEEE-cCC
Q 013909 192 CRGPTSRTFVLDSETRKWDSIPPLPS-PRYSPATQLW-RG-RLHVM-GGS 237 (434)
Q Consensus 192 ~~~~~~~~~~yd~~t~~W~~~~~~p~-~r~~~~~~~~-~~-~iyv~-GG~ 237 (434)
....--.+-+||.. +..+++...+. ...-|-+... ++ .|.|. ||.
T Consensus 72 ~~~g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI 120 (305)
T PF07433_consen 72 YETGRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGI 120 (305)
T ss_pred cCCCcEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCC
Confidence 12223567799998 67777776653 2444555544 34 45554 454
No 168
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=36.07 E-value=2.6e+02 Score=24.14 Aligned_cols=34 Identities=9% Similarity=0.171 Sum_probs=22.0
Q ss_pred EEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccC
Q 013909 344 VIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKL 388 (434)
Q Consensus 344 ~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~l 388 (434)
-..+|++++++|..... .++.+||.. +.+.+...
T Consensus 108 wsP~G~~l~~~g~~n~~---------G~l~~wd~~--~~~~i~~~ 141 (194)
T PF08662_consen 108 WSPDGRFLVLAGFGNLN---------GDLEFWDVR--KKKKISTF 141 (194)
T ss_pred ECCCCCEEEEEEccCCC---------cEEEEEECC--CCEEeecc
Confidence 34578888888875432 368899977 44444333
No 169
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=34.07 E-value=3.9e+02 Score=24.87 Aligned_cols=98 Identities=20% Similarity=0.337 Sum_probs=51.3
Q ss_pred CCEEEEE-ecc-CCCC----CceeeEEEEECCCCceEecCCCCCCC--Ccee-eEEEEeC-------CEEEEEeccCCCC
Q 013909 128 KNLFYVF-AGY-GSLD----YVHSHVDVYNFTDNKWVDRFDMPKDM--AHSH-LGVVSDG-------RYIYIVSGQYGPQ 191 (434)
Q Consensus 128 ~~~iyv~-GG~-~~~~----~~~~~v~~yd~~t~~W~~~~~~~~~~--~r~~-~~~~~~~-------~~lyv~GG~~~~~ 191 (434)
.++|+|+ .|. +... .....+..||+.+++=.+.-++|... +.+. ..+++.. +.+||.= ..
T Consensus 11 ~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD---~~- 86 (287)
T PF03022_consen 11 CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITD---SG- 86 (287)
T ss_dssp TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEE---TT-
T ss_pred CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeC---CC-
Confidence 5688888 343 2212 23456999999999853332232211 1222 3344433 3678751 11
Q ss_pred CCCCCceeEEEECCCCc-eEecCCCCCCcccceEEEECCEEEE
Q 013909 192 CRGPTSRTFVLDSETRK-WDSIPPLPSPRYSPATQLWRGRLHV 233 (434)
Q Consensus 192 ~~~~~~~~~~yd~~t~~-W~~~~~~p~~r~~~~~~~~~~~iyv 233 (434)
...+.+||..+++ |+.......+...+....++++.+-
T Consensus 87 ----~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~ 125 (287)
T PF03022_consen 87 ----GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQ 125 (287)
T ss_dssp ----TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEE
T ss_pred ----cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEe
Confidence 2479999999965 6666554333333444445555443
No 170
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=33.72 E-value=4.9e+02 Score=25.88 Aligned_cols=132 Identities=19% Similarity=0.253 Sum_probs=65.6
Q ss_pred EEEECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCcee-eEEEEeC--CEEEEEeccCCCCCCCCCceeE
Q 013909 124 AIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSH-LGVVSDG--RYIYIVSGQYGPQCRGPTSRTF 200 (434)
Q Consensus 124 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~-~~~~~~~--~~lyv~GG~~~~~~~~~~~~~~ 200 (434)
++..+++.+++||.+. .+.++|+.|.+=. ..+.. .|.. .+.+... +.+|..+- ...+-
T Consensus 209 avS~Dgkylatgg~d~------~v~Iw~~~t~ehv--~~~~g--hr~~V~~L~fr~gt~~lys~s~---------Drsvk 269 (479)
T KOG0299|consen 209 AVSSDGKYLATGGRDR------HVQIWDCDTLEHV--KVFKG--HRGAVSSLAFRKGTSELYSASA---------DRSVK 269 (479)
T ss_pred EEcCCCcEEEecCCCc------eEEEecCcccchh--hcccc--cccceeeeeeecCccceeeeec---------CCceE
Confidence 3445899999999763 3567777765422 12221 1211 2223322 45665432 12333
Q ss_pred EEECCCCceEecCCCCCCcccceEE------EECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCC
Q 013909 201 VLDSETRKWDSIPPLPSPRYSPATQ------LWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGP 274 (434)
Q Consensus 201 ~yd~~t~~W~~~~~~p~~r~~~~~~------~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~ 274 (434)
.++....... .-.++|.-. .-..++..+||.+. ++..|.+ |...+ +.-.+...+
T Consensus 270 vw~~~~~s~v------etlyGHqd~v~~IdaL~reR~vtVGgrDr-----T~rlwKi------~eesq---lifrg~~~s 329 (479)
T KOG0299|consen 270 VWSIDQLSYV------ETLYGHQDGVLGIDALSRERCVTVGGRDR-----TVRLWKI------PEESQ---LIFRGGEGS 329 (479)
T ss_pred EEehhHhHHH------HHHhCCccceeeechhcccceEEeccccc-----eeEEEec------cccce---eeeeCCCCC
Confidence 4444332211 122333222 22467888888753 5566664 22111 111111222
Q ss_pred ceeEEEECCEEEEEcCCCCC
Q 013909 275 HRACFVFNDRLFVVGGQEGD 294 (434)
Q Consensus 275 ~~~~~~~~~~iyv~GG~~~~ 294 (434)
--+++.+++.=||.|+.++.
T Consensus 330 idcv~~In~~HfvsGSdnG~ 349 (479)
T KOG0299|consen 330 IDCVAFINDEHFVSGSDNGS 349 (479)
T ss_pred eeeEEEecccceeeccCCce
Confidence 22677889999999998775
No 171
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=33.12 E-value=4.7e+02 Score=25.51 Aligned_cols=84 Identities=18% Similarity=0.173 Sum_probs=50.4
Q ss_pred eeeEEEEECCCC-----ceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCc---eE-ecCC
Q 013909 144 HSHVDVYNFTDN-----KWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK---WD-SIPP 214 (434)
Q Consensus 144 ~~~v~~yd~~t~-----~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~---W~-~~~~ 214 (434)
.++++..|.... .|..+.+-. .-..+.+...++.+|+.-..+.. ...+..+++.+.. |. .+.+
T Consensus 251 ~s~v~~~d~~~~~~~~~~~~~l~~~~---~~~~~~v~~~~~~~yi~Tn~~a~-----~~~l~~~~l~~~~~~~~~~~l~~ 322 (414)
T PF02897_consen 251 ESEVYLLDLDDGGSPDAKPKLLSPRE---DGVEYYVDHHGDRLYILTNDDAP-----NGRLVAVDLADPSPAEWWTVLIP 322 (414)
T ss_dssp EEEEEEEECCCTTTSS-SEEEEEESS---SS-EEEEEEETTEEEEEE-TT-T-----T-EEEEEETTSTSGGGEEEEEE-
T ss_pred CCeEEEEeccccCCCcCCcEEEeCCC---CceEEEEEccCCEEEEeeCCCCC-----CcEEEEecccccccccceeEEcC
Confidence 367999999875 788764421 12233444569999998663332 3678889888765 66 4443
Q ss_pred CCCCcccceEEEECCEEEEEc
Q 013909 215 LPSPRYSPATQLWRGRLHVMG 235 (434)
Q Consensus 215 ~p~~r~~~~~~~~~~~iyv~G 235 (434)
-.....--.+...+++|++.-
T Consensus 323 ~~~~~~l~~~~~~~~~Lvl~~ 343 (414)
T PF02897_consen 323 EDEDVSLEDVSLFKDYLVLSY 343 (414)
T ss_dssp -SSSEEEEEEEEETTEEEEEE
T ss_pred CCCceeEEEEEEECCEEEEEE
Confidence 333334444556788888874
No 172
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=32.16 E-value=3.9e+02 Score=24.25 Aligned_cols=102 Identities=15% Similarity=0.135 Sum_probs=63.9
Q ss_pred ECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeC--CEEEEEeccCCCCCCCCCceeEEEEC
Q 013909 127 IKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDG--RYIYIVSGQYGPQCRGPTSRTFVLDS 204 (434)
Q Consensus 127 ~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~--~~lyv~GG~~~~~~~~~~~~~~~yd~ 204 (434)
.++.=+..||-+ ..+..+|.+|++=.+- +.. .-....++-.| ..+.+-|+++ ..+-++|-
T Consensus 69 ~Dnskf~s~GgD------k~v~vwDV~TGkv~Rr--~rg--H~aqVNtV~fNeesSVv~SgsfD--------~s~r~wDC 130 (307)
T KOG0316|consen 69 SDNSKFASCGGD------KAVQVWDVNTGKVDRR--FRG--HLAQVNTVRFNEESSVVASGSFD--------SSVRLWDC 130 (307)
T ss_pred ccccccccCCCC------ceEEEEEcccCeeeee--ccc--ccceeeEEEecCcceEEEecccc--------ceeEEEEc
Confidence 355555555532 3488899999863321 100 00011122233 3455556543 45778899
Q ss_pred CCCceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEE
Q 013909 205 ETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSI 251 (434)
Q Consensus 205 ~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 251 (434)
.++.-+.+.-+..++.....+.+.+..+|.|-.++ .+..|++
T Consensus 131 RS~s~ePiQildea~D~V~Si~v~~heIvaGS~DG-----tvRtydi 172 (307)
T KOG0316|consen 131 RSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDG-----TVRTYDI 172 (307)
T ss_pred ccCCCCccchhhhhcCceeEEEecccEEEeeccCC-----cEEEEEe
Confidence 88888888888889999999999999888876554 5667775
No 173
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=30.14 E-value=8.6e+02 Score=27.61 Aligned_cols=71 Identities=11% Similarity=0.155 Sum_probs=39.4
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCC----------CCCceeeEEEEe--CCEEEEEeccCCCCCCCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK----------DMAHSHLGVVSD--GRYIYIVSGQYGPQCRGP 195 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~----------~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~ 195 (434)
++.|||.-= ..+.+.++|+..+.=..+..... ..-..-+++++. ++.|||.-..
T Consensus 579 ~g~lyVaDs------~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~-------- 644 (1057)
T PLN02919 579 NNRLFISDS------NHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE-------- 644 (1057)
T ss_pred CCeEEEEEC------CCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC--------
Confidence 678998731 23458899987654323322110 001123555654 5679986431
Q ss_pred CceeEEEECCCCceEec
Q 013909 196 TSRTFVLDSETRKWDSI 212 (434)
Q Consensus 196 ~~~~~~yd~~t~~W~~~ 212 (434)
...+.++|+.++.-+.+
T Consensus 645 n~~Ir~id~~~~~V~tl 661 (1057)
T PLN02919 645 NHALREIDFVNETVRTL 661 (1057)
T ss_pred CceEEEEecCCCEEEEE
Confidence 24678888887765544
No 174
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=28.39 E-value=3e+02 Score=24.53 Aligned_cols=71 Identities=11% Similarity=0.043 Sum_probs=45.9
Q ss_pred EcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccCCCce-eeeeeEEECCEEEE
Q 013909 328 VLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKLPYRI-KTTLTGFWDGWLYF 406 (434)
Q Consensus 328 ~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r-~~~~~~~~~~~l~v 406 (434)
.+...|..+..+.-.....+|+|+.--|.-+.. .+.++|+.+.+=..-.+++.++ +.-+.+.+++.+|.
T Consensus 36 vi~~yphDs~sfTQGL~~~~g~i~esTG~yg~S----------~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~ 105 (262)
T COG3823 36 VIRTYPHDSTSFTQGLEYLDGHILESTGLYGFS----------KIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQ 105 (262)
T ss_pred EEEeccCchhhhhcceeeeCCEEEEeccccccc----------eeEEEeccCceEEEEeecCCccccccceeeccceEEE
Confidence 344455555555555578889988888866544 7899999966633333455333 45677777887777
Q ss_pred Ec
Q 013909 407 TS 408 (434)
Q Consensus 407 ~G 408 (434)
+-
T Consensus 106 LT 107 (262)
T COG3823 106 LT 107 (262)
T ss_pred EE
Confidence 64
No 175
>PRK01742 tolB translocation protein TolB; Provisional
Probab=28.24 E-value=5.9e+02 Score=25.13 Aligned_cols=76 Identities=9% Similarity=0.121 Sum_probs=40.4
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~ 207 (434)
+++.+++...... ...++.+|..+++-+.+...+. .....+..-.+.+|++....++ ..++|.+|+.+.
T Consensus 214 DG~~la~~s~~~~---~~~i~i~dl~tg~~~~l~~~~g--~~~~~~wSPDG~~La~~~~~~g------~~~Iy~~d~~~~ 282 (429)
T PRK01742 214 DGSKLAYVSFENK---KSQLVVHDLRSGARKVVASFRG--HNGAPAFSPDGSRLAFASSKDG------VLNIYVMGANGG 282 (429)
T ss_pred CCCEEEEEEecCC---CcEEEEEeCCCCceEEEecCCC--ccCceeECCCCCEEEEEEecCC------cEEEEEEECCCC
Confidence 5544455443322 2358999998887666655432 1111111112344554332221 246899999888
Q ss_pred ceEecCC
Q 013909 208 KWDSIPP 214 (434)
Q Consensus 208 ~W~~~~~ 214 (434)
..+.+..
T Consensus 283 ~~~~lt~ 289 (429)
T PRK01742 283 TPSQLTS 289 (429)
T ss_pred CeEeecc
Confidence 7776643
No 176
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=27.90 E-value=5e+02 Score=24.21 Aligned_cols=198 Identities=14% Similarity=0.142 Sum_probs=0.0
Q ss_pred CceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEECCEEEEE
Q 013909 155 NKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVM 234 (434)
Q Consensus 155 ~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~ 234 (434)
+.|..+ .+|...+...-+.+-.+++.+++|+ ...+..-|-.-++|++.-...-....|+....+.+=++.
T Consensus 32 ~p~~~v-elp~~s~~l~ia~~~~g~~gwlVg~---------rgtiletdd~g~tw~qal~~~gr~~f~sv~f~~~egw~v 101 (339)
T COG4447 32 NPWTDV-ELPTLSPTLDIAFTESGSHGWLVGG---------RGTILETDDGGITWAQALDFLGRHAFHSVSFLGMEGWIV 101 (339)
T ss_pred Ccceee-eccccCcccceeEeecCcceEEEcC---------cceEEEecCCcccchhhhchhhhhheeeeeeeccccccc
Q ss_pred cCCCCCCCCCCcceEEEEeeccccccCceEEcc-CCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCcccccccccee
Q 013909 235 GGSKENRHTPGLEHWSIAVKDGKALEKAWRTEI-PIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVV 313 (434)
Q Consensus 235 GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~-~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~ 313 (434)
| .....+... ....+|.+++ +..++..-.++...+++.=.+=|-.+.
T Consensus 102 G--------e~sqll~T~-----DgGqsWARi~~~e~~eg~~~sI~f~d~q~g~m~gd~Ga------------------- 149 (339)
T COG4447 102 G--------EPSQLLHTT-----DGGQSWARIPLSEKLEGFPDSITFLDDQRGEMLGDQGA------------------- 149 (339)
T ss_pred C--------CcceEEEec-----CCCcchhhchhhcCCCCCcceeEEecchhhhhhcccce-------------------
Q ss_pred eCcEEEeC-CCCCeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccCCCce
Q 013909 314 YGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKLPYRI 392 (434)
Q Consensus 314 ~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r 392 (434)
++.-+ -.+.|+.+.+--.+......-+...+|..+++|-.. +-.-..+.-...|..-..-...|
T Consensus 150 ---il~T~DgGk~Wk~l~e~~v~~~~~n~ia~s~dng~vaVg~rG------------s~f~T~~aGqt~~~~~g~~s~~~ 214 (339)
T COG4447 150 ---ILKTTDGGKNWKALVEKAVGLAVPNEIARSADNGYVAVGARG------------SFFSTWGAGQTVWLPHGRNSSRR 214 (339)
T ss_pred ---EEEecCCcccHhHhcccccchhhhhhhhhhccCCeEEEecCc------------ceEecCCCCccEEeccCCCccch
Q ss_pred eeeeeEEECC--EEEEEcc
Q 013909 393 KTTLTGFWDG--WLYFTSG 409 (434)
Q Consensus 393 ~~~~~~~~~~--~l~v~GG 409 (434)
...-...-.+ .+++.||
T Consensus 215 letmg~adag~~g~la~g~ 233 (339)
T COG4447 215 LETMGLADAGSKGLLARGG 233 (339)
T ss_pred hcccccccCCccceEEEcc
No 177
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=27.74 E-value=4.2e+02 Score=26.86 Aligned_cols=85 Identities=9% Similarity=-0.016 Sum_probs=51.4
Q ss_pred CceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCccc
Q 013909 142 YVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYS 221 (434)
Q Consensus 142 ~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~ 221 (434)
..++.++.+|+.+++=-.-.++.. -.+..+...++.+.+++|+.+.. .-.+...|+.+..-..-+.-+..+..
T Consensus 372 ~~ls~LvllD~~tg~~l~~S~~~~---Ir~r~~~~~~~~~vaI~g~~G~~----~ikLvlid~~tLev~kes~~~i~~~S 444 (489)
T PF05262_consen 372 HYLSELVLLDSDTGDTLKRSPVNG---IRGRTFYEREDDLVAIAGCSGNA----AIKLVLIDPETLEVKKESEDEISWQS 444 (489)
T ss_pred CcceeEEEEeCCCCceecccccce---eccceeEEcCCCEEEEeccCCch----heEEEecCcccceeeeeccccccccC
Confidence 356789999999986444455544 22234556777888899884443 23344557887665555444444333
Q ss_pred ceEEEECCEEEEE
Q 013909 222 PATQLWRGRLHVM 234 (434)
Q Consensus 222 ~~~~~~~~~iyv~ 234 (434)
.+...++.+|++
T Consensus 445 -~l~~~~~~iyaV 456 (489)
T PF05262_consen 445 -SLIVDGQMIYAV 456 (489)
T ss_pred -ceEEcCCeEEEE
Confidence 344556677755
No 178
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=27.40 E-value=5.3e+02 Score=24.27 Aligned_cols=64 Identities=9% Similarity=-0.085 Sum_probs=38.6
Q ss_pred EECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECC
Q 013909 126 QIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (434)
Q Consensus 126 ~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~ 205 (434)
..+..=.+.||.++ .+.+||..+..=..+..-..+. |.-+-. ...-..|.||++. .+..+|+.
T Consensus 62 F~d~~~~~~G~~dg------~vr~~Dln~~~~~~igth~~~i-~ci~~~--~~~~~vIsgsWD~--------~ik~wD~R 124 (323)
T KOG1036|consen 62 FADESTIVTGGLDG------QVRRYDLNTGNEDQIGTHDEGI-RCIEYS--YEVGCVISGSWDK--------TIKFWDPR 124 (323)
T ss_pred ccCCceEEEeccCc------eEEEEEecCCcceeeccCCCce-EEEEee--ccCCeEEEcccCc--------cEEEEecc
Confidence 33566666777653 4889999998876665544422 221111 2233667888753 56778886
Q ss_pred C
Q 013909 206 T 206 (434)
Q Consensus 206 t 206 (434)
.
T Consensus 125 ~ 125 (323)
T KOG1036|consen 125 N 125 (323)
T ss_pred c
Confidence 5
No 179
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=26.94 E-value=6.9e+02 Score=25.45 Aligned_cols=202 Identities=14% Similarity=0.238 Sum_probs=102.5
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecC-------CCCCCCCceeeEEEEe-------CCEEEEEeccCCCCCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRF-------DMPKDMAHSHLGVVSD-------GRYIYIVSGQYGPQCR 193 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~-------~~~~~~~r~~~~~~~~-------~~~lyv~GG~~~~~~~ 193 (434)
++.|+|+.|.. ...+||-...+|.+.- +|.. --+|.+.+. +...|+.-+.++.
T Consensus 226 g~~iLvvsg~a-------qakl~DRdG~~~~e~~KGDQYI~Dm~n---TKGHia~lt~g~whP~~k~~FlT~s~Dgt--- 292 (641)
T KOG0772|consen 226 GDQILVVSGSA-------QAKLLDRDGFEIVEFSKGDQYIRDMYN---TKGHIAELTCGCWHPDNKEEFLTCSYDGT--- 292 (641)
T ss_pred CCeEEEEecCc-------ceeEEccCCceeeeeeccchhhhhhhc---cCCceeeeeccccccCcccceEEecCCCc---
Confidence 78899988753 3566787777776542 2322 223433332 2345665554432
Q ss_pred CCCceeEEEECCCCceEec--CCCCCCcccceEEEE--CCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCC
Q 013909 194 GPTSRTFVLDSETRKWDSI--PPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPI 269 (434)
Q Consensus 194 ~~~~~~~~yd~~t~~W~~~--~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~ 269 (434)
-.+|--+-...+-+.+ .++...|...+.|.+ ++++ +.+|+.. .+.+.|+ ...|..-+.+
T Consensus 293 ---lRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~D----GSIQ~W~---------~~~~~v~p~~ 355 (641)
T KOG0772|consen 293 ---LRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLD----GSIQIWD---------KGSRTVRPVM 355 (641)
T ss_pred ---EEEEecCCchhheeEEeeccCCCcccCceeeecCCCcch-hhhcccC----Cceeeee---------cCCcccccce
Confidence 2233222222222222 233445777777766 3566 6666543 3567776 2444443222
Q ss_pred -----CCCCCceeEE--EECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-C---CCCeEEcCCCCCCCCc
Q 013909 270 -----PRGGPHRACF--VFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-D---EMKWKVLPPMPKPNSH 338 (434)
Q Consensus 270 -----p~~~~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~---~~~W~~~~~~p~~r~~ 338 (434)
-.....-+++ ..++++++-=|++..- .+|.++ . -+.|+-|+.+ -..
T Consensus 356 ~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tL--------------------KvWDLrq~kkpL~~~tgL~t~---~~~ 412 (641)
T KOG0772|consen 356 KVKDAHLPGQDITSISFSYDGNYLLSRGFDDTL--------------------KVWDLRQFKKPLNVRTGLPTP---FPG 412 (641)
T ss_pred EeeeccCCCCceeEEEeccccchhhhccCCCce--------------------eeeeccccccchhhhcCCCcc---CCC
Confidence 1121122333 3478887777766431 355554 2 2367666532 222
Q ss_pred cceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccCCCc
Q 013909 339 IECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKLPYR 391 (434)
Q Consensus 339 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~lp~~ 391 (434)
-. |+...+.+|++.|-...+.. ....++.|| ..+...+..++..
T Consensus 413 td-c~FSPd~kli~TGtS~~~~~------~~g~L~f~d--~~t~d~v~ki~i~ 456 (641)
T KOG0772|consen 413 TD-CCFSPDDKLILTGTSAPNGM------TAGTLFFFD--RMTLDTVYKIDIS 456 (641)
T ss_pred Cc-cccCCCceEEEecccccCCC------CCceEEEEe--ccceeeEEEecCC
Confidence 22 33677888888886554443 223577887 4455555554444
No 180
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.67 E-value=5.5e+02 Score=24.25 Aligned_cols=105 Identities=11% Similarity=0.174 Sum_probs=51.3
Q ss_pred CCCCcEEEcCCCCCCCCceeEEEE----CCEEEEEeccCCCCCceeeEEEE---ECCC-CceEecC---CCCCCCCcee-
Q 013909 104 APDLEWEQMPSAPVPRLDGAAIQI----KNLFYVFAGYGSLDYVHSHVDVY---NFTD-NKWVDRF---DMPKDMAHSH- 171 (434)
Q Consensus 104 ~~~~~W~~~~~~p~~R~~~~~~~~----~~~iyv~GG~~~~~~~~~~v~~y---d~~t-~~W~~~~---~~~~~~~r~~- 171 (434)
....+|.+...|...|..-.-+.. -+...+.-+.++ . +.+| ||.. ..|+... .++.|+++..
T Consensus 97 ~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG---~---lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~ 170 (361)
T KOG2445|consen 97 AHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADG---I---LRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQ 170 (361)
T ss_pred cccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCc---E---EEEEecCCccccccchhhhhhhhccCCcccccC
Confidence 344688888887777765433332 222333323222 1 3333 3322 3586543 3333333322
Q ss_pred eEEEE-e-----CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCC
Q 013909 172 LGVVS-D-----GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL 215 (434)
Q Consensus 172 ~~~~~-~-----~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~ 215 (434)
.+.++ . ...++++|--. .........+|.|+-..++|..++.+
T Consensus 171 ~~~CvsWn~sr~~~p~iAvgs~e-~a~~~~~~~Iye~~e~~rKw~kva~L 219 (361)
T KOG2445|consen 171 PCFCVSWNPSRMHEPLIAVGSDE-DAPHLNKVKIYEYNENGRKWLKVAEL 219 (361)
T ss_pred cceEEeeccccccCceEEEEccc-CCccccceEEEEecCCcceeeeehhc
Confidence 22222 2 23466666533 22112234567778888899998654
No 181
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=26.57 E-value=4.2e+02 Score=22.86 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=38.2
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEE-eCCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
++++.|+-|... ..+..||+.... +..++.. ++. .+.. -++++.++||.... ..++..||..
T Consensus 71 g~~favi~g~~~-----~~v~lyd~~~~~---i~~~~~~-~~n--~i~wsP~G~~l~~~g~~n~-----~G~l~~wd~~- 133 (194)
T PF08662_consen 71 GNEFAVIYGSMP-----AKVTLYDVKGKK---IFSFGTQ-PRN--TISWSPDGRFLVLAGFGNL-----NGDLEFWDVR- 133 (194)
T ss_pred CCEEEEEEccCC-----cccEEEcCcccE---eEeecCC-Cce--EEEECCCCCEEEEEEccCC-----CcEEEEEECC-
Confidence 556666655322 148889996333 3333321 122 2222 36778888886432 2468889987
Q ss_pred CceEecCCCC
Q 013909 207 RKWDSIPPLP 216 (434)
Q Consensus 207 ~~W~~~~~~p 216 (434)
+.+.+....
T Consensus 134 -~~~~i~~~~ 142 (194)
T PF08662_consen 134 -KKKKISTFE 142 (194)
T ss_pred -CCEEeeccc
Confidence 444454433
No 182
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.05 E-value=5.6e+02 Score=24.14 Aligned_cols=94 Identities=15% Similarity=0.051 Sum_probs=55.8
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~ 207 (434)
+++||+.=+.. .. .--+|..|..+..=+.+..-|.+. .+.+.+..+|-+ +. .....+.+.+||..++
T Consensus 117 ~D~LLlAR~DG-h~--nLGvy~ldr~~g~~~~L~~~ps~K-----G~~~~D~a~F~i---~~--~~~g~~~i~~~Dli~~ 183 (339)
T PF09910_consen 117 EDRLLLARADG-HA--NLGVYSLDRRTGKAEKLSSNPSLK-----GTLVHDYACFGI---NN--FHKGVSGIHCLDLISG 183 (339)
T ss_pred cCEEEEEecCC-cc--eeeeEEEcccCCceeeccCCCCcC-----ceEeeeeEEEec---cc--cccCCceEEEEEccCC
Confidence 66787764432 22 223899999999888776665532 233334333322 11 1233688999999999
Q ss_pred ce--EecCCC-------CCCcccceEEEECCEEEEE
Q 013909 208 KW--DSIPPL-------PSPRYSPATQLWRGRLHVM 234 (434)
Q Consensus 208 ~W--~~~~~~-------p~~r~~~~~~~~~~~iyv~ 234 (434)
+| +..+.- ...|..-.++...+++|.|
T Consensus 184 ~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 184 KWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred eEEEEecccccCCCCCceEeeccccEEEEeeeEEEE
Confidence 99 443211 1224445667777887776
No 183
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=25.62 E-value=5.7e+02 Score=24.08 Aligned_cols=166 Identities=11% Similarity=0.113 Sum_probs=0.0
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~ 207 (434)
++.-...||.+ +.+..+|+.+++=..++.-..|. |..|-+-..+-.+.+.|-++ +.+-.+|+.+.
T Consensus 83 dgskVf~g~~D------k~~k~wDL~S~Q~~~v~~Hd~pv-kt~~wv~~~~~~cl~TGSWD--------KTlKfWD~R~~ 147 (347)
T KOG0647|consen 83 DGSKVFSGGCD------KQAKLWDLASGQVSQVAAHDAPV-KTCHWVPGMNYQCLVTGSWD--------KTLKFWDTRSS 147 (347)
T ss_pred CCceEEeeccC------CceEEEEccCCCeeeeeecccce-eEEEEecCCCcceeEecccc--------cceeecccCCC
Q ss_pred ceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEECCEEEE
Q 013909 208 KWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFV 287 (434)
Q Consensus 208 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv 287 (434)
..+..+..|-..+++-+...-+.|.-+ ...+-+|+++ -...+.....+.-.-.....++..+..-|.
T Consensus 148 --~pv~t~~LPeRvYa~Dv~~pm~vVata------~r~i~vynL~-----n~~te~k~~~SpLk~Q~R~va~f~d~~~~a 214 (347)
T KOG0647|consen 148 --NPVATLQLPERVYAADVLYPMAVVATA------ERHIAVYNLE-----NPPTEFKRIESPLKWQTRCVACFQDKDGFA 214 (347)
T ss_pred --CeeeeeeccceeeehhccCceeEEEec------CCcEEEEEcC-----CCcchhhhhcCcccceeeEEEEEecCCceE
Q ss_pred EcCCCCCCCCCCCCCc-------cccccccceeeCcEEEeC
Q 013909 288 VGGQEGDFMAKPGSPI-------FKCSRRHEVVYGDVYMLD 321 (434)
Q Consensus 288 ~GG~~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~yd 321 (434)
+|+..+.-..+.++.+ ++|-+..+...++||.-|
T Consensus 215 lGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVN 255 (347)
T KOG0647|consen 215 LGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVN 255 (347)
T ss_pred eeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEec
No 184
>PF14830 Haemocyan_bet_s: Haemocyanin beta-sandwich; PDB: 1JS8_B 3QJO_A 1LNL_A.
Probab=24.91 E-value=62 Score=24.94 Aligned_cols=29 Identities=21% Similarity=0.479 Sum_probs=16.1
Q ss_pred EECCEEEEEeccCCCCCceeeEEEEECCC
Q 013909 126 QIKNLFYVFAGYGSLDYVHSHVDVYNFTD 154 (434)
Q Consensus 126 ~~~~~iyv~GG~~~~~~~~~~v~~yd~~t 154 (434)
...|..+|.||........+.+++||+..
T Consensus 34 ~~AG~F~vLGG~~EMpW~FdRlykydIT~ 62 (103)
T PF14830_consen 34 HKAGTFFVLGGEKEMPWAFDRLYKYDITD 62 (103)
T ss_dssp EEEEEEEE---TTS---B-SS-EEEE-HH
T ss_pred eEccEEEEcCCCccCccccCccchhhHHH
Confidence 34678999999988887888999999764
No 185
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=24.30 E-value=7.2e+02 Score=24.79 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=31.8
Q ss_pred eeEEEECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceee--EEEE-eCCEEEEEeccCC
Q 013909 122 GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHL--GVVS-DGRYIYIVSGQYG 189 (434)
Q Consensus 122 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~--~~~~-~~~~lyv~GG~~~ 189 (434)
++++..+.-.|++||.-. .+++++.+.++.--.+- .+.+.. +... .|+..++.||.++
T Consensus 85 ~al~s~n~G~~l~ag~i~-----g~lYlWelssG~LL~v~-----~aHYQ~ITcL~fs~dgs~iiTgskDg 145 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGTIS-----GNLYLWELSSGILLNVL-----SAHYQSITCLKFSDDGSHIITGSKDG 145 (476)
T ss_pred eeeecCCCceEEEeeccc-----CcEEEEEeccccHHHHH-----HhhccceeEEEEeCCCcEEEecCCCc
Confidence 555556667778877321 23788777776522111 112221 2222 3678888888655
No 186
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=24.02 E-value=5.3e+02 Score=25.70 Aligned_cols=60 Identities=13% Similarity=0.251 Sum_probs=30.2
Q ss_pred cceEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCc-eeEEEE--CCEEEEEcCCCCC
Q 013909 221 SPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPH-RACFVF--NDRLFVVGGQEGD 294 (434)
Q Consensus 221 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~-~~~~~~--~~~iyv~GG~~~~ 294 (434)
-++.+..+.--|++||... ...++|.+. +..- +.-+ .+.+. -++..+ ||..++-||.++.
T Consensus 84 v~al~s~n~G~~l~ag~i~----g~lYlWels-------sG~L--L~v~-~aHYQ~ITcL~fs~dgs~iiTgskDg~ 146 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTIS----GNLYLWELS-------SGIL--LNVL-SAHYQSITCLKFSDDGSHIITGSKDGA 146 (476)
T ss_pred eeeeecCCCceEEEeeccc----CcEEEEEec-------cccH--HHHH-HhhccceeEEEEeCCCcEEEecCCCcc
Confidence 4566666777777777431 245666642 2210 0011 11111 122222 7888888887764
No 187
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=23.82 E-value=5.8e+02 Score=27.25 Aligned_cols=57 Identities=19% Similarity=0.311 Sum_probs=31.1
Q ss_pred EEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCC
Q 013909 224 TQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGD 294 (434)
Q Consensus 224 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~ 294 (434)
.++.++++.++.|.+ .+.-+|+. ++-+.+..++......+..+-+++..|.|+.++.
T Consensus 379 l~vS~d~~~~~Sga~-----~SikiWn~---------~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Ge 435 (888)
T KOG0306|consen 379 LCVSSDSILLASGAG-----ESIKIWNR---------DTLKCIRTITCGYILASKFVPGDRYIVLGTKNGE 435 (888)
T ss_pred EEeecCceeeeecCC-----CcEEEEEc---------cCcceeEEeccccEEEEEecCCCceEEEeccCCc
Confidence 445566777776543 35667763 2223344455554332334447777777776654
No 188
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=23.70 E-value=6.6e+02 Score=24.11 Aligned_cols=62 Identities=13% Similarity=0.196 Sum_probs=34.4
Q ss_pred cEEEeC-CCCCeEEcCCC-CCCCCccceeEEEECC-EEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEecc
Q 013909 316 DVYMLD-DEMKWKVLPPM-PKPNSHIECAWVIVNN-SIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGK 387 (434)
Q Consensus 316 ~v~~yd-~~~~W~~~~~~-p~~r~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 387 (434)
.+..|+ ....-+...+. -.|-.+..+-+.-.++ -.|++.-.+..- +++.||+...+.++++.
T Consensus 168 ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV----------~v~~y~~~~g~~~~lQ~ 232 (346)
T COG2706 168 RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTV----------DVLEYNPAVGKFEELQT 232 (346)
T ss_pred eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEE----------EEEEEcCCCceEEEeee
Confidence 477777 54444443211 1222222222233344 478887766433 68888888888888764
No 189
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=22.79 E-value=1.5e+02 Score=30.26 Aligned_cols=65 Identities=9% Similarity=0.045 Sum_probs=38.5
Q ss_pred CCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccCCCceeeeeeEEE--CCEEEEEccc
Q 013909 333 PKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKLPYRIKTTLTGFW--DGWLYFTSGQ 410 (434)
Q Consensus 333 p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~--~~~l~v~GG~ 410 (434)
-.|+.+..++.-..+..||+.|-- .++|++|++.++|-.- +...-....++.+ ...|+.+||.
T Consensus 131 RIP~~GRDm~y~~~scDly~~gsg-------------~evYRlNLEqGrfL~P--~~~~~~~lN~v~in~~hgLla~Gt~ 195 (703)
T KOG2321|consen 131 RIPKFGRDMKYHKPSCDLYLVGSG-------------SEVYRLNLEQGRFLNP--FETDSGELNVVSINEEHGLLACGTE 195 (703)
T ss_pred ecCcCCccccccCCCccEEEeecC-------------cceEEEEccccccccc--cccccccceeeeecCccceEEeccc
Confidence 344444444444556788887742 3799999999999652 2222222233333 3577778875
Q ss_pred cC
Q 013909 411 RD 412 (434)
Q Consensus 411 ~~ 412 (434)
..
T Consensus 196 ~g 197 (703)
T KOG2321|consen 196 DG 197 (703)
T ss_pred Cc
Confidence 43
No 190
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=22.62 E-value=6.5e+02 Score=23.68 Aligned_cols=92 Identities=5% Similarity=0.042 Sum_probs=49.7
Q ss_pred hccceeeccCCCCcEEEcCCCCCCCCceeEEE--ECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceee
Q 013909 95 LSATFADLPAPDLEWEQMPSAPVPRLDGAAIQ--IKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHL 172 (434)
Q Consensus 95 ~~~~~~~~~~~~~~W~~~~~~p~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~ 172 (434)
+...+-.||..+..=..+..-..+- .++. .....+|.||++. .+..+|+....= ...... +..-+
T Consensus 73 ~dg~vr~~Dln~~~~~~igth~~~i---~ci~~~~~~~~vIsgsWD~------~ik~wD~R~~~~--~~~~d~--~kkVy 139 (323)
T KOG1036|consen 73 LDGQVRRYDLNTGNEDQIGTHDEGI---RCIEYSYEVGCVISGSWDK------TIKFWDPRNKVV--VGTFDQ--GKKVY 139 (323)
T ss_pred cCceEEEEEecCCcceeeccCCCce---EEEEeeccCCeEEEcccCc------cEEEEecccccc--cccccc--CceEE
Confidence 4456777777776544444322221 1111 2455778888873 377788876221 111222 23445
Q ss_pred EEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCc
Q 013909 173 GVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK 208 (434)
Q Consensus 173 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~ 208 (434)
++.+.+++|.| |+. -..+..||+.+..
T Consensus 140 ~~~v~g~~LvV-g~~--------~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 140 CMDVSGNRLVV-GTS--------DRKVLIYDLRNLD 166 (323)
T ss_pred EEeccCCEEEE-eec--------CceEEEEEccccc
Confidence 66666666554 542 2578889987654
No 191
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=22.53 E-value=5.2e+02 Score=22.49 Aligned_cols=87 Identities=10% Similarity=0.048 Sum_probs=49.6
Q ss_pred ccCCCCCceeeEEEEECCCCceEec--CCCC-CCCCceeeEEEEeC-CEEEEEeccCCCCCCCCCceeEEEECCCCceEe
Q 013909 136 GYGSLDYVHSHVDVYNFTDNKWVDR--FDMP-KDMAHSHLGVVSDG-RYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDS 211 (434)
Q Consensus 136 G~~~~~~~~~~v~~yd~~t~~W~~~--~~~~-~~~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~ 211 (434)
|-++......++|++|..++.|..+ .+-+ .-.|. ...=+.+ +-++++|-..+. ...--.++.|++.+++=+.
T Consensus 79 g~~a~eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK--~i~WiDD~~L~vIIG~a~GT--vS~GGnLy~~nl~tg~~~~ 154 (200)
T PF15525_consen 79 GPEAEEEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPK--YIEWIDDNNLAVIIGYAHGT--VSKGGNLYKYNLNTGNLTE 154 (200)
T ss_pred CCccccccceeEEEEecCCCceEEEEecCcccccCCc--eeEEecCCcEEEEEccccce--EccCCeEEEEEccCCceeE
Confidence 3344444566799999999988654 2222 11133 1122223 345556633332 1123679999999999998
Q ss_pred cCCCCCCcccceEEE
Q 013909 212 IPPLPSPRYSPATQL 226 (434)
Q Consensus 212 ~~~~p~~r~~~~~~~ 226 (434)
+.+....+.....+.
T Consensus 155 ly~~~dkkqQVis~e 169 (200)
T PF15525_consen 155 LYEWKDKKQQVISAE 169 (200)
T ss_pred eeeccccceeEEEEE
Confidence 887765544433333
No 192
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=21.75 E-value=4.7e+02 Score=21.72 Aligned_cols=85 Identities=16% Similarity=0.130 Sum_probs=48.2
Q ss_pred EEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcc----cceEEEE-CCEEEEEcCCCCCCCCCCcceE
Q 013909 175 VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRY----SPATQLW-RGRLHVMGGSKENRHTPGLEHW 249 (434)
Q Consensus 175 ~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~----~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~ 249 (434)
+.++|.+|=++-...... ..-+..||..+.+.....++|.... ...+.++ +++|-++--. ......++|
T Consensus 2 V~vnG~~hW~~~~~~~~~---~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~---~~~~~~~IW 75 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDE---KDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQC---DETSKIEIW 75 (164)
T ss_pred EEECCEEEeeEEecCCCC---ceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEec---cCCccEEEE
Confidence 457888887765433221 1268999999999943334443322 2233223 6677777321 112347788
Q ss_pred EEEeeccccccCceEEcc
Q 013909 250 SIAVKDGKALEKAWRTEI 267 (434)
Q Consensus 250 ~~~~~~~~~~~~~W~~~~ 267 (434)
-..-+++ ....|++.-
T Consensus 76 vm~~~~~--~~~SWtK~~ 91 (164)
T PF07734_consen 76 VMKKYGY--GKESWTKLF 91 (164)
T ss_pred EEeeecc--CcceEEEEE
Confidence 7653332 278999854
No 193
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=20.20 E-value=1.3e+03 Score=26.22 Aligned_cols=70 Identities=14% Similarity=0.142 Sum_probs=38.6
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCC-------------CCCceeeEEEEe--CCEEEEEeccCCCCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK-------------DMAHSHLGVVSD--GRYIYIVSGQYGPQC 192 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~-------------~~~r~~~~~~~~--~~~lyv~GG~~~~~~ 192 (434)
++.|||.-..+ ..+.++|+.++.=+.++.... ..-..-+.+++. ++.|||....
T Consensus 635 gn~LYVaDt~n------~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~----- 703 (1057)
T PLN02919 635 KNLLYVADTEN------HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG----- 703 (1057)
T ss_pred CCEEEEEeCCC------ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-----
Confidence 45678764321 347888888776544421100 000112344444 6789987431
Q ss_pred CCCCceeEEEECCCCceEe
Q 013909 193 RGPTSRTFVLDSETRKWDS 211 (434)
Q Consensus 193 ~~~~~~~~~yd~~t~~W~~ 211 (434)
.+.+++||+.+.....
T Consensus 704 ---~~~I~v~d~~~g~v~~ 719 (1057)
T PLN02919 704 ---QHQIWEYNISDGVTRV 719 (1057)
T ss_pred ---CCeEEEEECCCCeEEE
Confidence 3678899988766543
No 194
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=20.18 E-value=1.3e+03 Score=26.07 Aligned_cols=32 Identities=13% Similarity=0.103 Sum_probs=26.3
Q ss_pred cEEEEECCCCceEEeccCCCceeeeeeEEECC
Q 013909 371 EVFQFHLDSLTWSVIGKLPYRIKTTLTGFWDG 402 (434)
Q Consensus 371 ~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~ 402 (434)
..++|+++.|+...+..=|.||.-.++..++.
T Consensus 999 ~~~~y~~~~n~l~~fadD~~pR~Vt~~~~lD~ 1030 (1205)
T KOG1898|consen 999 HFVRYRREDNQLIVFADDPVPRHVTALELLDY 1030 (1205)
T ss_pred EEEEEecCCCeEEEEeCCCccceeeEEEEecC
Confidence 57899999999999998899998766666543
Done!