Query 013909
Match_columns 434
No_of_seqs 325 out of 2455
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 19:22:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013909.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013909hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zgk_A Kelch-like ECH-associat 100.0 1.3E-49 4.3E-54 377.2 28.1 265 98-400 40-308 (308)
2 2xn4_A Kelch-like protein 2; s 100.0 1.5E-47 5.1E-52 361.8 33.4 269 97-404 30-302 (302)
3 3ii7_A Kelch-like protein 7; p 100.0 2.3E-47 7.9E-52 361.2 31.3 267 97-402 24-295 (306)
4 2vpj_A Kelch-like protein 12; 100.0 1.3E-46 4.3E-51 355.2 32.3 267 96-401 30-300 (301)
5 4asc_A Kelch repeat and BTB do 100.0 3.6E-47 1.2E-51 361.4 26.3 282 97-409 13-305 (315)
6 1zgk_A Kelch-like ECH-associat 100.0 3E-46 1E-50 354.0 27.9 280 114-430 10-292 (308)
7 2woz_A Kelch repeat and BTB do 100.0 1.4E-45 4.8E-50 351.0 28.6 279 98-408 25-314 (318)
8 2xn4_A Kelch-like protein 2; s 100.0 2.1E-45 7.2E-50 347.1 28.6 288 28-350 11-302 (302)
9 2uvk_A YJHT; unknown function, 100.0 1.6E-45 5.5E-50 356.2 26.1 281 111-421 2-336 (357)
10 2vpj_A Kelch-like protein 12; 100.0 2.6E-44 8.7E-49 339.4 28.9 266 127-430 13-283 (301)
11 3ii7_A Kelch-like protein 7; p 100.0 4.7E-44 1.6E-48 338.5 29.4 264 128-430 11-277 (306)
12 4asc_A Kelch repeat and BTB do 100.0 2.7E-43 9.3E-48 334.7 24.4 244 128-412 4-254 (315)
13 2uvk_A YJHT; unknown function, 100.0 9.3E-43 3.2E-47 336.8 26.0 307 65-390 2-353 (357)
14 2woz_A Kelch repeat and BTB do 100.0 3.8E-43 1.3E-47 334.1 22.1 290 32-355 15-315 (318)
15 2zwa_A Leucine carboxyl methyl 100.0 6.7E-38 2.3E-42 327.1 25.6 268 108-412 378-676 (695)
16 1k3i_A Galactose oxidase precu 100.0 1.4E-38 4.8E-43 331.6 17.3 327 52-412 167-532 (656)
17 2zwa_A Leucine carboxyl methyl 100.0 6.4E-35 2.2E-39 304.6 23.6 282 62-380 378-695 (695)
18 1k3i_A Galactose oxidase precu 100.0 4.6E-35 1.6E-39 305.1 19.0 298 98-430 167-502 (656)
19 3q7m_A Lipoprotein YFGL, BAMB; 98.2 0.0032 1.1E-07 59.7 29.8 237 97-408 113-366 (376)
20 3dsm_A Uncharacterized protein 98.1 0.00056 1.9E-08 64.1 21.8 253 96-408 16-285 (328)
21 3q7m_A Lipoprotein YFGL, BAMB; 97.8 0.021 7.2E-07 54.0 28.5 234 98-408 64-325 (376)
22 3mbr_X Glutamine cyclotransfer 97.8 0.0041 1.4E-07 55.1 20.4 165 164-384 16-184 (243)
23 3mbr_X Glutamine cyclotransfer 97.7 0.0027 9.3E-08 56.3 17.5 196 110-356 10-224 (243)
24 3dsm_A Uncharacterized protein 97.6 0.022 7.4E-07 53.0 23.4 215 144-409 16-244 (328)
25 2ovr_B FBW7, F-BOX/WD repeat p 97.5 0.011 3.6E-07 57.5 20.4 216 97-384 179-396 (445)
26 3nol_A Glutamine cyclotransfer 97.4 0.0084 2.9E-07 53.7 16.4 160 169-384 43-206 (262)
27 3nol_A Glutamine cyclotransfer 97.4 0.0088 3E-07 53.5 16.3 198 108-356 30-245 (262)
28 3jrp_A Fusion protein of prote 97.3 0.018 6.1E-07 53.9 18.7 233 98-390 34-299 (379)
29 3vgz_A Uncharacterized protein 97.2 0.069 2.4E-06 49.3 22.3 99 97-210 69-177 (353)
30 1k8k_C P40, ARP2/3 complex 41 97.2 0.033 1.1E-06 52.0 19.7 141 128-294 19-165 (372)
31 2iwa_A Glutamine cyclotransfer 97.2 0.028 9.6E-07 50.6 17.9 185 171-411 23-227 (266)
32 1l0q_A Surface layer protein; 97.1 0.0045 1.5E-07 58.7 12.6 177 34-250 3-186 (391)
33 1l0q_A Surface layer protein; 97.1 0.0078 2.7E-07 57.0 14.2 126 98-250 13-144 (391)
34 2xbg_A YCF48-like protein; pho 97.1 0.15 5.2E-06 47.3 22.4 243 98-409 16-268 (327)
35 1ri6_A Putative isomerase YBHE 97.0 0.0035 1.2E-07 58.0 10.9 20 371-390 302-321 (343)
36 4ery_A WD repeat-containing pr 97.0 0.099 3.4E-06 47.6 20.6 189 128-382 76-271 (312)
37 2iwa_A Glutamine cyclotransfer 97.0 0.034 1.2E-06 50.1 16.3 113 109-236 9-124 (266)
38 3v7d_B Cell division control p 96.9 0.2 7E-06 48.3 23.2 169 178-409 279-451 (464)
39 1p22_A F-BOX/WD-repeat protein 96.9 0.023 7.9E-07 54.9 16.1 217 123-411 137-355 (435)
40 3jrp_A Fusion protein of prote 96.9 0.033 1.1E-06 52.0 16.6 104 128-251 22-132 (379)
41 2z2n_A Virginiamycin B lyase; 96.8 0.21 7.1E-06 44.7 21.0 117 98-235 79-200 (299)
42 3bws_A Protein LP49; two-domai 96.8 0.063 2.1E-06 51.4 18.1 98 98-212 145-249 (433)
43 2ovr_B FBW7, F-BOX/WD repeat p 96.7 0.45 1.6E-05 45.7 24.0 240 97-411 139-381 (445)
44 3v9f_A Two-component system se 96.6 0.42 1.5E-05 50.0 24.1 237 98-408 384-645 (781)
45 3jro_A Fusion protein of prote 96.6 0.028 9.7E-07 58.8 14.9 233 98-389 32-296 (753)
46 3nok_A Glutaminyl cyclase; bet 96.6 0.1 3.5E-06 46.7 16.2 156 170-384 56-215 (268)
47 1qhu_A Protein (hemopexin); be 96.6 0.44 1.5E-05 46.3 22.0 60 128-208 158-217 (460)
48 4a2l_A BT_4663, two-component 96.6 0.46 1.6E-05 49.8 24.1 237 98-408 378-648 (795)
49 1got_B GT-beta; complex (GTP-b 96.6 0.24 8.3E-06 45.8 19.8 189 128-381 108-303 (340)
50 2ojh_A Uncharacterized protein 96.6 0.036 1.2E-06 49.5 13.6 237 97-387 22-266 (297)
51 2xbg_A YCF48-like protein; pho 96.6 0.48 1.6E-05 43.8 24.2 244 99-409 58-311 (327)
52 1rwi_B Serine/threonine-protei 96.5 0.17 5.8E-06 44.8 17.9 214 128-410 34-253 (270)
53 3vgz_A Uncharacterized protein 96.5 0.2 7E-06 46.1 19.0 70 128-209 52-123 (353)
54 1p22_A F-BOX/WD-repeat protein 96.5 0.043 1.5E-06 52.9 14.6 164 97-294 193-357 (435)
55 1gxr_A ESG1, transducin-like e 96.5 0.06 2.1E-06 49.2 14.8 215 128-411 108-327 (337)
56 3nok_A Glutaminyl cyclase; bet 96.5 0.061 2.1E-06 48.1 14.0 103 115-236 49-153 (268)
57 2qc5_A Streptogramin B lactona 96.5 0.45 1.5E-05 42.5 21.1 119 97-235 83-205 (300)
58 1k8k_C P40, ARP2/3 complex 41 96.4 0.22 7.6E-06 46.1 18.7 149 33-205 20-172 (372)
59 3dwl_C Actin-related protein 2 96.4 0.014 4.6E-07 55.0 10.2 96 128-238 22-121 (377)
60 3bws_A Protein LP49; two-domai 96.3 0.051 1.7E-06 52.1 13.8 160 32-210 133-296 (433)
61 3zwl_B Eukaryotic translation 96.3 0.1 3.6E-06 48.2 15.4 106 128-252 43-150 (369)
62 4aez_A CDC20, WD repeat-contai 96.3 0.14 4.9E-06 48.6 16.6 134 52-208 114-250 (401)
63 3ow8_A WD repeat-containing pr 96.2 0.17 5.8E-06 46.6 16.3 190 129-383 48-241 (321)
64 1r5m_A SIR4-interacting protei 96.2 0.15 5E-06 48.2 16.3 26 128-159 160-185 (425)
65 3ow8_A WD repeat-containing pr 96.2 0.51 1.8E-05 43.3 19.6 211 128-411 91-311 (321)
66 3jro_A Fusion protein of prote 96.2 0.033 1.1E-06 58.2 12.4 104 128-251 20-130 (753)
67 2hes_X YDR267CP; beta-propelle 96.1 0.1 3.4E-06 48.3 14.3 197 128-379 118-328 (330)
68 3hfq_A Uncharacterized protein 96.1 0.057 2E-06 50.1 12.5 101 98-212 64-178 (347)
69 4ery_A WD repeat-containing pr 96.1 0.72 2.4E-05 41.7 19.9 186 128-382 34-226 (312)
70 4aow_A Guanine nucleotide-bind 96.1 0.018 6.1E-07 53.1 8.7 24 346-381 316-339 (340)
71 4a2l_A BT_4663, two-component 96.0 1.5 5.1E-05 45.9 24.4 238 98-408 331-603 (795)
72 3u4y_A Uncharacterized protein 96.0 0.14 4.8E-06 46.9 14.4 131 98-251 21-158 (331)
73 3hfq_A Uncharacterized protein 95.9 0.12 4.2E-06 47.8 13.7 61 146-214 19-80 (347)
74 1rwi_B Serine/threonine-protei 95.9 0.65 2.2E-05 40.8 18.0 119 98-236 47-168 (270)
75 4aez_A CDC20, WD repeat-contai 95.8 0.45 1.5E-05 45.1 17.7 93 96-206 112-205 (401)
76 3fm0_A Protein CIAO1; WDR39,SG 95.8 0.18 6.1E-06 46.9 14.4 184 128-358 27-216 (345)
77 3no2_A Uncharacterized protein 95.8 1 3.5E-05 40.4 19.0 209 128-408 4-230 (276)
78 2hqs_A Protein TOLB; TOLB, PAL 95.8 0.37 1.3E-05 46.2 16.9 202 128-387 189-395 (415)
79 3b7f_A Glycosyl hydrolase, BNR 95.8 1.1 3.7E-05 42.5 20.1 95 107-213 43-154 (394)
80 3vl1_A 26S proteasome regulato 95.7 0.73 2.5E-05 43.5 18.8 64 128-208 108-172 (420)
81 1kb0_A Quinohemoprotein alcoho 95.7 0.86 2.9E-05 46.9 20.3 99 122-236 71-182 (677)
82 2pm9_A Protein WEB1, protein t 95.7 0.61 2.1E-05 43.9 17.9 106 129-251 126-247 (416)
83 3fm0_A Protein CIAO1; WDR39,SG 95.6 0.12 4.1E-06 48.1 12.5 157 178-388 27-190 (345)
84 3v7d_B Cell division control p 95.5 0.95 3.2E-05 43.5 19.1 104 124-251 127-234 (464)
85 2hes_X YDR267CP; beta-propelle 95.5 0.75 2.5E-05 42.3 17.5 142 128-294 24-176 (330)
86 3v9f_A Two-component system se 95.5 2.9 9.8E-05 43.6 24.4 242 97-408 333-600 (781)
87 2hqs_A Protein TOLB; TOLB, PAL 95.5 0.5 1.7E-05 45.2 16.7 204 128-387 143-352 (415)
88 1q7f_A NHL, brain tumor CG1071 95.3 1.4 4.9E-05 39.1 21.6 220 128-408 40-268 (286)
89 2z2n_A Virginiamycin B lyase; 95.3 1.4 4.9E-05 39.0 24.7 240 98-408 37-283 (299)
90 1sq9_A Antiviral protein SKI8; 95.2 1.1 3.9E-05 41.7 18.0 105 125-252 22-156 (397)
91 3mkq_A Coatomer beta'-subunit; 95.2 0.37 1.3E-05 50.2 15.7 65 128-210 24-90 (814)
92 3odt_A Protein DOA1; ubiquitin 95.1 0.74 2.5E-05 41.2 15.7 16 371-386 288-303 (313)
93 3dwl_C Actin-related protein 2 95.0 0.37 1.3E-05 44.9 13.8 134 98-251 34-175 (377)
94 2pm7_B Protein transport prote 95.0 1.9 6.6E-05 38.7 18.8 64 129-207 67-133 (297)
95 2ad6_A Methanol dehydrogenase 95.0 1.4 4.9E-05 44.2 18.7 100 122-236 56-168 (571)
96 3mmy_A MRNA export factor; mRN 94.9 0.32 1.1E-05 44.8 13.0 63 128-208 97-162 (368)
97 2ynn_A Coatomer subunit beta'; 94.9 0.85 2.9E-05 41.3 15.7 102 128-251 24-126 (304)
98 2ojh_A Uncharacterized protein 94.9 0.67 2.3E-05 40.9 14.7 186 144-386 21-213 (297)
99 3scy_A Hypothetical bacterial 94.8 1.2 4E-05 41.3 16.8 99 98-207 30-130 (361)
100 1r5m_A SIR4-interacting protei 94.8 2.6 9E-05 39.3 20.0 66 128-211 119-185 (425)
101 1gxr_A ESG1, transducin-like e 94.8 0.54 1.8E-05 42.6 13.9 190 128-385 62-261 (337)
102 4g56_B MGC81050 protein; prote 94.8 0.42 1.4E-05 44.6 13.4 51 348-412 282-334 (357)
103 2pbi_B Guanine nucleotide-bind 94.7 2.6 8.9E-05 39.0 20.0 52 346-411 294-347 (354)
104 1vyh_C Platelet-activating fac 94.7 0.57 2E-05 44.6 14.5 65 128-209 161-226 (410)
105 3mkq_A Coatomer beta'-subunit; 94.7 0.74 2.5E-05 47.9 16.4 188 128-383 66-263 (814)
106 4g56_B MGC81050 protein; prote 94.5 1.9 6.3E-05 40.1 17.3 29 128-156 53-81 (357)
107 3zwl_B Eukaryotic translation 94.5 2 6.7E-05 39.3 17.4 67 128-207 85-152 (369)
108 3azo_A Aminopeptidase; POP fam 94.5 1.7 5.7E-05 44.1 18.3 240 97-385 102-375 (662)
109 3bg1_A Protein SEC13 homolog; 94.5 0.66 2.3E-05 42.3 13.8 104 128-251 24-134 (316)
110 4gqb_B Methylosome protein 50; 94.5 0.61 2.1E-05 43.4 13.7 69 127-209 91-161 (344)
111 1pjx_A Dfpase, DIISOPROPYLFLUO 94.4 0.82 2.8E-05 41.2 14.2 99 128-236 28-135 (314)
112 2qc5_A Streptogramin B lactona 94.4 2.5 8.6E-05 37.4 24.4 239 97-408 41-289 (300)
113 3bg1_A Protein SEC13 homolog; 94.3 0.75 2.6E-05 41.9 13.7 69 129-212 71-143 (316)
114 3scy_A Hypothetical bacterial 94.2 0.74 2.5E-05 42.6 13.7 99 131-235 15-116 (361)
115 2ynn_A Coatomer subunit beta'; 94.1 1.7 5.8E-05 39.2 15.7 62 128-207 66-129 (304)
116 1ri6_A Putative isomerase YBHE 94.1 2.2 7.6E-05 38.5 16.6 50 146-205 61-114 (343)
117 1vyh_C Platelet-activating fac 94.1 1.9 6.5E-05 40.9 16.6 99 128-250 119-220 (410)
118 3k26_A Polycomb protein EED; W 94.1 0.57 1.9E-05 43.0 12.6 100 129-251 85-190 (366)
119 1yfq_A Cell cycle arrest prote 94.1 2.1 7.3E-05 38.7 16.4 52 347-413 262-315 (342)
120 2pm7_B Protein transport prote 94.0 1.8 6.1E-05 38.9 15.5 70 128-212 20-92 (297)
121 3c5m_A Oligogalacturonate lyas 94.0 2.8 9.5E-05 38.9 17.3 61 98-164 61-121 (396)
122 3sfz_A APAF-1, apoptotic pepti 93.9 0.75 2.6E-05 50.7 15.1 135 128-294 1014-1150(1249)
123 2pm9_A Protein WEB1, protein t 93.9 1.6 5.5E-05 40.9 15.6 63 128-208 78-147 (416)
124 4e54_B DNA damage-binding prot 93.9 4 0.00014 38.8 18.6 101 128-251 176-280 (435)
125 2z3z_A Dipeptidyl aminopeptida 93.8 2.7 9.3E-05 42.9 18.3 59 97-163 101-164 (706)
126 2z3z_A Dipeptidyl aminopeptida 93.8 4.4 0.00015 41.3 19.7 192 144-381 234-437 (706)
127 3u4y_A Uncharacterized protein 93.7 1.2 4.2E-05 40.3 14.0 64 128-209 9-74 (331)
128 1pgu_A Actin interacting prote 93.7 1.8 6E-05 43.1 16.2 26 347-384 263-288 (615)
129 3iz6_a 40S ribosomal protein R 93.6 4.3 0.00015 37.8 18.0 170 197-412 180-366 (380)
130 3vl1_A 26S proteasome regulato 93.6 4.7 0.00016 37.7 21.5 92 98-209 120-215 (420)
131 2aq5_A Coronin-1A; WD40 repeat 93.6 0.65 2.2E-05 43.8 12.2 103 128-250 93-204 (402)
132 3k26_A Polycomb protein EED; W 93.5 1.9 6.5E-05 39.4 15.1 66 128-208 127-194 (366)
133 4gga_A P55CDC, cell division c 93.5 5.2 0.00018 37.8 21.0 95 96-208 124-220 (420)
134 3odt_A Protein DOA1; ubiquitin 93.4 4 0.00014 36.2 18.2 39 371-410 247-285 (313)
135 4gga_A P55CDC, cell division c 93.3 1.7 6E-05 41.2 14.8 82 146-238 126-208 (420)
136 3ei3_B DNA damage-binding prot 93.2 2.5 8.5E-05 39.3 15.6 96 98-208 97-196 (383)
137 1erj_A Transcriptional repress 93.2 2.1 7.3E-05 40.2 15.1 99 128-250 134-235 (393)
138 3g4e_A Regucalcin; six bladed 93.2 2.5 8.6E-05 38.0 15.0 86 128-234 24-114 (297)
139 2ecf_A Dipeptidyl peptidase IV 93.0 1.8 6.2E-05 44.5 15.4 67 128-214 119-189 (741)
140 1got_B GT-beta; complex (GTP-b 93.0 5.3 0.00018 36.5 19.6 63 128-207 66-129 (340)
141 1yfq_A Cell cycle arrest prote 92.8 3.2 0.00011 37.5 15.5 100 128-250 22-128 (342)
142 3f3f_A Nucleoporin SEH1; struc 92.8 5.1 0.00018 35.8 18.7 31 346-388 316-347 (351)
143 2bkl_A Prolyl endopeptidase; m 92.8 9.6 0.00033 38.9 20.4 239 127-408 78-336 (695)
144 3b7f_A Glycosyl hydrolase, BNR 92.8 6.5 0.00022 36.9 21.6 61 147-214 33-98 (394)
145 1yiq_A Quinohemoprotein alcoho 92.7 9.3 0.00032 39.2 20.0 98 122-235 64-174 (689)
146 3lrv_A PRE-mRNA-splicing facto 92.6 4.3 0.00015 37.1 16.1 65 128-208 138-203 (343)
147 2aq5_A Coronin-1A; WD40 repeat 92.6 3.6 0.00012 38.5 15.8 90 130-235 145-238 (402)
148 1kv9_A Type II quinohemoprotei 92.5 10 0.00036 38.6 21.8 98 122-235 60-169 (668)
149 3i2n_A WD repeat-containing pr 92.5 1.5 5.2E-05 39.9 12.7 66 130-208 32-101 (357)
150 4a11_B DNA excision repair pro 92.4 1.2 4.1E-05 41.5 12.1 65 128-208 111-177 (408)
151 2vdu_B TRNA (guanine-N(7)-)-me 92.4 3.9 0.00013 39.2 15.9 40 371-410 331-373 (450)
152 3sfz_A APAF-1, apoptotic pepti 92.4 2.1 7.1E-05 47.1 15.6 173 178-411 972-1148(1249)
153 3pe7_A Oligogalacturonate lyas 92.2 4 0.00014 37.8 15.4 108 98-213 61-184 (388)
154 1w6s_A Methanol dehydrogenase 92.0 6.6 0.00023 39.5 17.5 99 122-235 56-173 (599)
155 1jmx_B Amine dehydrogenase; ox 91.9 5.9 0.0002 35.8 16.0 68 128-211 10-79 (349)
156 3pe7_A Oligogalacturonate lyas 91.9 3.5 0.00012 38.2 14.7 65 145-214 168-233 (388)
157 3iuj_A Prolyl endopeptidase; h 91.8 13 0.00043 38.1 20.1 241 98-387 156-413 (693)
158 2dg1_A DRP35, lactonase; beta 91.8 3.7 0.00013 37.2 14.5 95 128-235 55-152 (333)
159 1pex_A Collagenase-3, MMP-13; 91.7 2 6.9E-05 36.8 11.5 53 173-237 28-88 (207)
160 1pby_B Quinohemoprotein amine 91.6 2 7E-05 38.7 12.4 108 98-211 12-129 (337)
161 1qhu_A Protein (hemopexin); be 91.6 10 0.00035 36.6 19.1 48 178-238 158-207 (460)
162 2ad6_A Methanol dehydrogenase 91.5 12 0.00041 37.3 23.2 106 97-212 73-193 (571)
163 3hxj_A Pyrrolo-quinoline quino 91.5 4.4 0.00015 36.5 14.5 86 126-235 105-194 (330)
164 2ecf_A Dipeptidyl peptidase IV 91.2 2.2 7.4E-05 43.9 13.3 34 128-162 47-81 (741)
165 4e54_B DNA damage-binding prot 91.0 1 3.5E-05 43.1 10.0 103 128-250 131-237 (435)
166 2vdu_B TRNA (guanine-N(7)-)-me 91.0 1.9 6.4E-05 41.4 11.9 63 129-209 210-274 (450)
167 2p4o_A Hypothetical protein; p 90.9 8.7 0.0003 34.5 21.9 110 108-234 21-133 (306)
168 1itv_A MMP9; adaptive molecula 90.7 3 0.0001 35.3 11.4 53 173-237 11-73 (195)
169 4gqb_B Methylosome protein 50; 90.6 5 0.00017 37.0 14.1 101 128-250 138-243 (344)
170 2bkl_A Prolyl endopeptidase; m 90.1 10 0.00034 38.7 17.2 243 98-385 95-357 (695)
171 1nir_A Nitrite reductase; hemo 90.1 4.2 0.00014 40.4 13.8 63 127-208 147-213 (543)
172 3azo_A Aminopeptidase; POP fam 89.9 17 0.00059 36.4 20.6 202 145-386 102-332 (662)
173 1nir_A Nitrite reductase; hemo 89.7 5.1 0.00017 39.8 14.1 92 97-209 159-260 (543)
174 4a11_B DNA excision repair pro 89.6 1.6 5.5E-05 40.6 9.9 104 128-250 55-172 (408)
175 2ymu_A WD-40 repeat protein; u 89.5 6 0.0002 38.9 14.5 61 128-206 355-416 (577)
176 1flg_A Protein (quinoprotein e 89.4 19 0.00064 36.1 21.0 75 122-212 62-144 (582)
177 3ei3_B DNA damage-binding prot 89.4 10 0.00035 34.9 15.3 94 180-293 87-185 (383)
178 3ju4_A Endo-N-acetylneuraminid 89.3 15 0.0005 34.6 16.3 135 205-357 268-407 (670)
179 1pjx_A Dfpase, DIISOPROPYLFLUO 89.2 2.8 9.5E-05 37.5 10.9 141 51-205 46-206 (314)
180 2pbi_B Guanine nucleotide-bind 89.2 10 0.00035 34.9 15.0 99 128-251 165-269 (354)
181 2xdw_A Prolyl endopeptidase; a 89.1 14 0.00049 37.7 17.4 237 98-385 152-422 (710)
182 4ggc_A P55CDC, cell division c 89.0 9.2 0.00031 33.8 14.3 82 146-238 46-128 (318)
183 3g4e_A Regucalcin; six bladed 88.8 9.6 0.00033 34.0 14.2 168 97-292 73-263 (297)
184 2xdw_A Prolyl endopeptidase; a 88.6 23 0.0008 36.1 20.2 214 128-385 135-375 (710)
185 3o4h_A Acylamino-acid-releasin 88.4 6.1 0.00021 39.2 13.7 199 125-384 29-232 (582)
186 3hxj_A Pyrrolo-quinoline quino 88.3 12 0.00041 33.5 14.7 81 128-234 70-153 (330)
187 3no2_A Uncharacterized protein 88.3 13 0.00045 32.9 18.4 200 98-354 16-230 (276)
188 2p4o_A Hypothetical protein; p 88.2 14 0.00048 33.1 21.4 95 96-207 52-148 (306)
189 3dm0_A Maltose-binding peripla 88.2 5.4 0.00018 40.7 13.4 103 128-251 483-590 (694)
190 3i2n_A WD repeat-containing pr 88.1 7.3 0.00025 35.2 13.2 27 346-384 178-204 (357)
191 3mmy_A MRNA export factor; mRN 87.9 11 0.00037 34.1 14.2 100 129-250 54-157 (368)
192 1q7f_A NHL, brain tumor CG1071 87.7 14 0.00047 32.4 24.1 124 97-236 51-182 (286)
193 3c5m_A Oligogalacturonate lyas 87.7 8.1 0.00028 35.6 13.4 127 98-236 169-301 (396)
194 3v65_B Low-density lipoprotein 87.6 19 0.00063 33.8 18.7 192 146-408 97-305 (386)
195 3frx_A Guanine nucleotide-bind 87.5 7.2 0.00025 35.2 12.6 98 128-250 118-224 (319)
196 1sq9_A Antiviral protein SKI8; 87.4 17 0.00059 33.3 19.6 63 130-206 82-157 (397)
197 1erj_A Transcriptional repress 86.6 20 0.0007 33.2 15.8 25 178-210 134-158 (393)
198 1k32_A Tricorn protease; prote 86.5 15 0.0005 39.6 16.1 92 128-237 347-440 (1045)
199 3f3f_A Nucleoporin SEH1; struc 86.4 17 0.00058 32.2 16.5 103 178-293 22-134 (351)
200 3fvz_A Peptidyl-glycine alpha- 86.3 19 0.00064 32.6 23.5 215 146-409 70-310 (329)
201 4aow_A Guanine nucleotide-bind 86.0 18 0.00063 32.2 15.4 69 129-212 51-123 (340)
202 1su3_A Interstitial collagenas 85.9 12 0.00041 36.1 13.5 27 344-384 411-437 (450)
203 3lrv_A PRE-mRNA-splicing facto 85.9 20 0.00068 32.5 17.7 61 178-251 138-199 (343)
204 3oyo_A Hemopexin fold protein 85.8 7.6 0.00026 33.6 10.9 19 346-378 179-197 (225)
205 3e5z_A Putative gluconolactona 85.6 18 0.00063 31.8 14.3 126 97-235 90-235 (296)
206 1sqj_A OXG-RCBH, oligoxylogluc 85.6 37 0.0013 35.3 25.4 247 98-386 38-340 (789)
207 2ghs_A AGR_C_1268P; regucalcin 85.1 22 0.00074 32.2 17.5 86 128-234 60-150 (326)
208 4h5i_A Guanine nucleotide-exch 85.1 23 0.0008 32.6 16.6 191 128-379 144-343 (365)
209 1qks_A Cytochrome CD1 nitrite 84.7 12 0.00041 37.3 13.4 59 128-205 166-226 (567)
210 3p5b_L Low density lipoprotein 84.4 27 0.00094 32.8 18.5 195 146-408 93-307 (400)
211 1ijq_A LDL receptor, low-densi 84.3 23 0.0008 31.9 21.0 195 146-408 11-225 (316)
212 2cn3_A Xyloglucanase, beta-1,4 83.7 43 0.0015 34.5 28.0 257 106-409 10-321 (737)
213 1nr0_A Actin interacting prote 83.7 37 0.0013 33.8 20.9 27 128-160 335-361 (611)
214 1n7d_A LDL receptor, low-densi 83.5 33 0.0011 35.1 16.4 213 98-383 387-618 (699)
215 3iz6_a 40S ribosomal protein R 83.5 28 0.00094 32.1 17.8 63 129-205 170-236 (380)
216 1pgu_A Actin interacting prote 83.2 36 0.0012 33.3 17.7 52 347-411 552-604 (615)
217 1hxn_A Hemopexin, HPX; heme, b 83.2 9.9 0.00034 32.7 10.4 49 347-410 126-188 (219)
218 2xyi_A Probable histone-bindin 82.9 10 0.00034 35.9 11.6 20 129-154 141-160 (430)
219 2fp8_A Strictosidine synthase; 82.8 26 0.00091 31.4 15.5 84 122-212 83-180 (322)
220 1itv_A MMP9; adaptive molecula 82.3 7.4 0.00025 32.8 9.2 58 338-411 100-166 (195)
221 1sqj_A OXG-RCBH, oligoxylogluc 82.3 50 0.0017 34.3 29.8 235 106-390 3-280 (789)
222 1n7d_A LDL receptor, low-densi 82.2 14 0.00046 38.0 12.9 195 146-408 387-601 (699)
223 2xzm_R RACK1; ribosome, transl 82.0 29 0.00099 31.3 15.2 24 178-209 87-110 (343)
224 4ggc_A P55CDC, cell division c 81.6 27 0.00092 30.6 21.9 56 97-158 45-102 (318)
225 2dg1_A DRP35, lactonase; beta 81.1 7 0.00024 35.3 9.4 97 98-206 113-213 (333)
226 3e5z_A Putative gluconolactona 80.8 29 0.00099 30.5 18.0 87 129-234 40-131 (296)
227 1pex_A Collagenase-3, MMP-13; 80.4 26 0.00089 29.7 17.0 94 123-237 28-136 (207)
228 1yiq_A Quinohemoprotein alcoho 80.3 13 0.00044 38.1 11.9 122 223-385 65-200 (689)
229 3m0c_C LDL receptor, low-densi 80.3 59 0.002 33.8 19.4 194 146-408 405-619 (791)
230 2xzm_R RACK1; ribosome, transl 78.8 37 0.0013 30.6 14.1 62 128-207 87-150 (343)
231 3ba0_A Macrophage metalloelast 78.7 13 0.00045 34.7 10.4 27 344-384 328-355 (365)
232 1gen_A Gelatinase A; hydrolase 78.4 31 0.0011 29.5 13.3 49 346-410 134-193 (218)
233 3v64_C Agrin; beta propeller, 77.8 43 0.0015 30.7 21.6 194 146-408 54-262 (349)
234 1kb0_A Quinohemoprotein alcoho 77.5 15 0.00051 37.5 11.3 122 223-385 72-207 (677)
235 1yr2_A Prolyl oligopeptidase; 77.3 45 0.0015 34.1 15.1 195 145-386 243-448 (741)
236 1jmx_B Amine dehydrogenase; ox 77.3 5.7 0.00019 35.9 7.5 52 177-236 9-62 (349)
237 1kv9_A Type II quinohemoprotei 77.3 28 0.00095 35.4 13.3 122 223-385 61-195 (668)
238 2ymu_A WD-40 repeat protein; u 77.1 56 0.0019 31.7 18.9 91 128-238 273-365 (577)
239 1qks_A Cytochrome CD1 nitrite 76.9 45 0.0015 33.1 14.4 94 97-209 177-278 (567)
240 1pby_B Quinohemoprotein amine 76.8 39 0.0013 29.8 13.8 56 146-210 12-69 (337)
241 3c7x_A Matrix metalloproteinas 76.3 26 0.00087 29.4 10.6 54 173-237 10-70 (196)
242 1su3_A Interstitial collagenas 76.1 34 0.0012 32.9 12.7 62 123-205 267-335 (450)
243 3v65_B Low-density lipoprotein 75.5 52 0.0018 30.6 20.1 208 98-380 97-319 (386)
244 1nr0_A Actin interacting prote 75.3 68 0.0023 31.8 20.9 66 128-208 250-315 (611)
245 1yr2_A Prolyl oligopeptidase; 74.5 80 0.0027 32.2 17.5 212 128-385 173-401 (741)
246 2xyi_A Probable histone-bindin 74.0 30 0.001 32.5 12.0 19 349-379 291-309 (430)
247 3m0c_C LDL receptor, low-densi 73.0 93 0.0032 32.3 19.4 170 128-355 435-620 (791)
248 3a0f_A Xyloglucanase; beta-pro 72.7 92 0.0031 32.1 23.0 201 98-333 44-294 (763)
249 1hxn_A Hemopexin, HPX; heme, b 72.4 45 0.0015 28.5 14.0 58 127-206 27-90 (219)
250 3frx_A Guanine nucleotide-bind 71.4 56 0.0019 29.1 15.6 63 128-208 76-140 (319)
251 3o4h_A Acylamino-acid-releasin 71.0 80 0.0027 30.9 14.7 92 130-237 76-169 (582)
252 3ott_A Two-component system se 70.8 57 0.002 33.4 14.0 130 52-206 494-626 (758)
253 1w6s_A Methanol dehydrogenase 70.1 18 0.00061 36.3 9.5 125 222-385 56-199 (599)
254 3ott_A Two-component system se 69.7 43 0.0015 34.4 12.7 118 98-238 494-617 (758)
255 3dm0_A Maltose-binding peripla 69.7 51 0.0017 33.3 13.2 13 371-383 542-554 (694)
256 1xfd_A DIP, dipeptidyl aminope 69.6 45 0.0015 33.7 12.8 76 128-212 71-149 (723)
257 3sjl_D Methylamine dehydrogena 69.5 32 0.0011 32.3 10.6 103 97-209 59-172 (386)
258 2cn3_A Xyloglucanase, beta-1,4 69.5 1.1E+02 0.0036 31.5 19.2 89 147-237 224-322 (737)
259 2hz6_A Endoplasmic reticulum t 69.1 1.3 4.6E-05 41.5 0.9 51 174-237 5-57 (369)
260 3lp9_A LS-24; SEED albumin, pl 68.7 20 0.00067 31.0 8.3 21 346-380 182-202 (227)
261 2fp8_A Strictosidine synthase; 68.3 65 0.0022 28.7 15.3 81 146-235 41-144 (322)
262 3oyo_A Hemopexin fold protein 67.3 42 0.0014 28.8 10.1 51 346-410 126-189 (225)
263 1npe_A Nidogen, entactin; glyc 67.2 61 0.0021 27.9 18.4 202 146-408 11-225 (267)
264 3hrp_A Uncharacterized protein 66.4 86 0.0029 29.3 20.9 91 128-234 141-236 (409)
265 1npe_A Nidogen, entactin; glyc 65.1 67 0.0023 27.6 22.6 189 128-384 47-243 (267)
266 1flg_A Protein (quinoprotein e 64.8 31 0.0011 34.4 10.1 121 223-384 63-200 (582)
267 3tc9_A Hypothetical hydrolase; 64.0 81 0.0028 29.8 12.5 98 97-212 159-263 (430)
268 3a0f_A Xyloglucanase; beta-pro 63.5 1.4E+02 0.0048 30.7 25.0 203 147-390 45-295 (763)
269 3p5b_L Low density lipoprotein 62.8 1E+02 0.0034 28.8 21.0 213 98-380 93-321 (400)
270 2gop_A Trilobed protease; beta 60.2 93 0.0032 27.6 14.0 103 97-214 152-259 (347)
271 1gen_A Gelatinase A; hydrolase 59.1 83 0.0028 26.7 10.7 92 128-237 87-193 (218)
272 3ju4_A Endo-N-acetylneuraminid 58.7 1.2E+02 0.0042 28.6 20.3 125 107-236 270-405 (670)
273 3v64_C Agrin; beta propeller, 57.4 1.1E+02 0.0039 27.7 22.2 114 98-235 54-177 (349)
274 1jof_A Carboxy-CIS,CIS-muconat 56.7 94 0.0032 28.2 11.4 232 130-412 3-276 (365)
275 3iuj_A Prolyl endopeptidase; h 56.3 1.7E+02 0.0058 29.5 15.3 212 128-385 139-365 (693)
276 2gop_A Trilobed protease; beta 54.2 1.2E+02 0.004 26.9 16.8 125 97-236 43-188 (347)
277 4h5i_A Guanine nucleotide-exch 52.4 1.4E+02 0.0047 27.2 20.0 61 344-412 227-291 (365)
278 3hrp_A Uncharacterized protein 51.1 1.6E+02 0.0054 27.5 17.3 55 172-236 134-190 (409)
279 3vu4_A KMHSV2; beta-propeller 49.3 1.5E+02 0.0051 26.7 15.8 214 128-412 30-262 (355)
280 4a0p_A LRP6, LRP-6, low-densit 48.8 2.2E+02 0.0075 28.5 21.7 195 146-408 16-224 (628)
281 3tc9_A Hypothetical hydrolase; 47.0 85 0.0029 29.7 9.5 49 178-236 149-198 (430)
282 3ba0_A Macrophage metalloelast 46.5 1.8E+02 0.0061 26.9 14.6 94 123-237 185-293 (365)
283 3qhy_B Beta-lactamase inhibito 45.0 1.6E+02 0.0055 25.9 11.6 96 171-292 151-246 (282)
284 3gre_A Serine/threonine-protei 45.0 1.9E+02 0.0064 26.6 16.4 60 178-250 181-242 (437)
285 3fvz_A Peptidyl-glycine alpha- 44.9 1.7E+02 0.0057 26.0 25.0 146 128-293 154-313 (329)
286 1ijq_A LDL receptor, low-densi 44.4 1.7E+02 0.0058 26.0 23.8 213 98-381 11-240 (316)
287 2mad_H Methylamine dehydrogena 43.2 2E+02 0.0068 26.4 22.7 101 98-210 48-160 (373)
288 3c7x_A Matrix metalloproteinas 41.6 1.1E+02 0.0037 25.5 8.2 62 128-208 109-177 (196)
289 2oiz_A Aromatic amine dehydrog 39.9 2.1E+02 0.0073 25.8 15.8 263 96-402 30-358 (361)
290 3sjl_D Methylamine dehydrogena 39.6 60 0.0021 30.4 6.9 71 128-210 291-367 (386)
291 3c75_H MADH, methylamine dehyd 36.9 2.7E+02 0.0094 26.2 15.4 76 128-210 84-162 (426)
292 1ck7_A Protein (gelatinase A); 36.3 2.1E+02 0.0071 28.7 10.5 25 172-206 447-471 (631)
293 2mad_H Methylamine dehydrogena 34.4 2.7E+02 0.0093 25.4 22.8 76 129-209 33-109 (373)
294 3dw8_B Serine/threonine-protei 34.0 2.4E+02 0.0082 25.8 10.4 29 345-385 351-379 (447)
295 2ece_A 462AA long hypothetical 32.7 3.4E+02 0.012 26.0 14.4 73 128-209 95-176 (462)
296 2ghs_A AGR_C_1268P; regucalcin 31.1 2E+02 0.0069 25.5 9.0 55 316-388 72-127 (326)
297 4a5s_A Dipeptidyl peptidase 4 29.0 4.6E+02 0.016 26.4 18.0 66 98-163 37-110 (740)
298 3sov_A LRP-6, low-density lipo 28.9 3.1E+02 0.011 24.4 17.6 192 145-407 13-224 (318)
299 2qe8_A Uncharacterized protein 27.2 3.3E+02 0.011 24.2 18.3 101 128-235 27-138 (343)
300 3dr2_A Exported gluconolactona 25.7 69 0.0024 28.2 4.7 99 97-212 169-273 (305)
301 3gre_A Serine/threonine-protei 25.5 2.1E+02 0.0071 26.3 8.3 26 347-384 225-250 (437)
302 4d9s_A UVB-resistance protein 24.9 2.5E+02 0.0085 26.1 8.6 16 171-186 131-147 (406)
303 3lp9_A LS-24; SEED albumin, pl 24.3 71 0.0024 27.4 4.2 63 127-208 71-149 (227)
304 2oaj_A Protein SNI1; WD40 repe 24.3 6.2E+02 0.021 26.3 14.3 22 349-383 165-186 (902)
305 1fwx_A Nitrous oxide reductase 23.8 5.4E+02 0.019 25.5 12.0 52 178-237 101-156 (595)
306 2p9w_A MAL S 1 allergenic prot 23.3 4.2E+02 0.014 24.0 20.8 55 345-412 242-306 (334)
307 4hvt_A Ritya.17583.B, post-pro 23.1 4.9E+02 0.017 26.4 10.9 154 196-387 268-437 (711)
308 3s94_A LRP-6, low-density lipo 22.5 5.7E+02 0.02 25.3 19.8 196 146-408 327-538 (619)
309 4fj6_A Glycoside hydrolase fam 22.3 4.2E+02 0.014 25.8 9.8 159 171-353 328-502 (523)
310 3mvd_K Regulator of chromosome 22.3 4.7E+02 0.016 24.1 11.1 16 121-136 137-153 (423)
No 1
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=1.3e-49 Score=377.20 Aligned_cols=265 Identities=19% Similarity=0.310 Sum_probs=230.9
Q ss_pred ceeeccCCCCcEEEcCCCCCCCCceeEEEECCEEEEEeccC---CCCCceeeEEEEECCCCceEecCCCCCCCCceeeEE
Q 013909 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYG---SLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGV 174 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~---~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~ 174 (434)
+++.||+.+++|+.++++|.+|.+|++++++++|||+||.. ......+++++||+.+++|++++++|. +|..|++
T Consensus 40 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~ 117 (308)
T 1zgk_A 40 YLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSV--PRNRIGV 117 (308)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSS--CCBTCEE
T ss_pred eEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCc--CccccEE
Confidence 44555555666777777888999999999999999999983 233356789999999999999999887 7999999
Q ss_pred EEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEee
Q 013909 175 VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVK 254 (434)
Q Consensus 175 ~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 254 (434)
++++++||++||.+... .++++++||+.+++|+.++++|.+|..|+++.++++|||+||..+....+.+++|+
T Consensus 118 ~~~~~~iyv~GG~~~~~---~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd---- 190 (308)
T 1zgk_A 118 GVIDGHIYAVGGSHGCI---HHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYY---- 190 (308)
T ss_dssp EEETTEEEEECCEETTE---ECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEE----
T ss_pred EEECCEEEEEcCCCCCc---ccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEe----
Confidence 99999999999987643 36899999999999999999999999999999999999999998766667777776
Q ss_pred ccccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCC
Q 013909 255 DGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMP 333 (434)
Q Consensus 255 ~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p 333 (434)
+.+++|+.++++|.++..++++.++++|||+||.+... .++++++|| .+++|+.++++|
T Consensus 191 ---~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-----------------~~~~v~~yd~~~~~W~~~~~~p 250 (308)
T 1zgk_A 191 ---PERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQD-----------------QLNSVERYDVETETWTFVAPMK 250 (308)
T ss_dssp ---TTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSS-----------------BCCCEEEEETTTTEEEECCCCS
T ss_pred ---CCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCC-----------------ccceEEEEeCCCCcEEECCCCC
Confidence 78999999999999998899999999999999987542 367899999 888999999999
Q ss_pred CCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccCCCceeeeeeEEE
Q 013909 334 KPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKLPYRIKTTLTGFW 400 (434)
Q Consensus 334 ~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~ 400 (434)
.+|..+++ ++++++|||+||.+... .++++++||+++++|+.+++||.+|..++++++
T Consensus 251 ~~r~~~~~--~~~~~~i~v~GG~~~~~-------~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~l 308 (308)
T 1zgk_A 251 HRRSALGI--TVHQGRIYVLGGYDGHT-------FLDSVECYDPDTDTWSEVTRMTSGRSGVGVAVT 308 (308)
T ss_dssp SCCBSCEE--EEETTEEEEECCBCSSC-------BCCEEEEEETTTTEEEEEEECSSCCBSCEEEEC
T ss_pred CCccceEE--EEECCEEEEEcCcCCCc-------ccceEEEEcCCCCEEeecCCCCCCcccceeEeC
Confidence 99987654 78899999999987654 678999999999999999999999999988763
No 2
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.5e-47 Score=361.82 Aligned_cols=269 Identities=19% Similarity=0.313 Sum_probs=239.0
Q ss_pred cceeeccCCCCcEEEcCCCCCCCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEE
Q 013909 97 ATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS 176 (434)
Q Consensus 97 ~~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~ 176 (434)
.+++.||+.+++|+.++++|.+|..|+++.++++|||+||..+.. ..+++++||+.+++|++++++|. +|..|++++
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~~ 106 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSL-RVRTVDSYDPVKDQWTSVANMRD--RRSTLGAAV 106 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSS-BCCCEEEEETTTTEEEEECCCSS--CCBSCEEEE
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCc-cccceEEECCCCCceeeCCCCCc--cccceEEEE
Confidence 489999999999999999999999999999999999999987654 56789999999999999999887 799999999
Q ss_pred eCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEECCEEEEEcCCCCCC--CCCCcceEEEEee
Q 013909 177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENR--HTPGLEHWSIAVK 254 (434)
Q Consensus 177 ~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~~~~~~~ 254 (434)
++++||++||.+... .++++++||+.+++|+.+++||.+|..|+++.++++|||+||..... ..+.+++|+
T Consensus 107 ~~~~iyv~GG~~~~~---~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd---- 179 (302)
T 2xn4_A 107 LNGLLYAVGGFDGST---GLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYN---- 179 (302)
T ss_dssp ETTEEEEEEEECSSC---EEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEE----
T ss_pred ECCEEEEEcCCCCCc---cCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEe----
Confidence 999999999987643 36899999999999999999999999999999999999999986543 355666666
Q ss_pred ccccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCC
Q 013909 255 DGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMP 333 (434)
Q Consensus 255 ~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p 333 (434)
+.+++|+.++++|.++..++++.++++||++||.++.. ..+++++|| .+++|+.++++|
T Consensus 180 ---~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-----------------~~~~~~~yd~~~~~W~~~~~~~ 239 (302)
T 2xn4_A 180 ---ATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPL-----------------VRKSVEVYDPTTNAWRQVADMN 239 (302)
T ss_dssp ---TTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSS-----------------BCCCEEEEETTTTEEEEECCCS
T ss_pred ---CCCCcEEECCCCccccccccEEEECCEEEEECCCCCCc-----------------ccceEEEEeCCCCCEeeCCCCC
Confidence 88999999999999999899999999999999986542 467899999 888999999999
Q ss_pred CCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEec-cCCCceeeeeeEEECCEE
Q 013909 334 KPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIG-KLPYRIKTTLTGFWDGWL 404 (434)
Q Consensus 334 ~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~lp~~r~~~~~~~~~~~l 404 (434)
.+|..++ +++.+++|||+||.+... .++++++||+++++|+.++ +||.+|..|++++++++|
T Consensus 240 ~~r~~~~--~~~~~~~i~v~GG~~~~~-------~~~~v~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~i 302 (302)
T 2xn4_A 240 MCRRNAG--VCAVNGLLYVVGGDDGSC-------NLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDKRL 302 (302)
T ss_dssp SCCBSCE--EEEETTEEEEECCBCSSS-------BCCCEEEEETTTTEEEECSSCCSSCCBSCEEEEEEC--
T ss_pred CccccCe--EEEECCEEEEECCcCCCc-------ccccEEEEcCCCCeEEECCcccCcccccceEEEecccC
Confidence 9998765 488899999999987654 5679999999999999997 799999999999998875
No 3
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=2.3e-47 Score=361.19 Aligned_cols=267 Identities=20% Similarity=0.347 Sum_probs=239.0
Q ss_pred cceeeccCCCCcEEEcCCCCCCCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEE
Q 013909 97 ATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS 176 (434)
Q Consensus 97 ~~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~ 176 (434)
.+++.||+.+++|+.++++|.+|.+|+++.++++|||+||.. ....+++++||+.+++|+.++++|. +|..|++++
T Consensus 24 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~--~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~~ 99 (306)
T 3ii7_A 24 QSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQ--LFPIKRMDCYNVVKDSWYSKLGPPT--PRDSLAACA 99 (306)
T ss_dssp TSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBS--SSBCCEEEEEETTTTEEEEEECCSS--CCBSCEEEE
T ss_pred ceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCC--CCCcceEEEEeCCCCeEEECCCCCc--cccceeEEE
Confidence 489999999999999999999999999999999999999998 4467889999999999999999886 799999999
Q ss_pred eCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEECCEEEEEcCCCCCCC----CCCcceEEEE
Q 013909 177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRH----TPGLEHWSIA 252 (434)
Q Consensus 177 ~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~----~~~~~~~~~~ 252 (434)
++++||++||.+.. ...++++++||+.+++|+.+++||.+|..|+++.++++|||+||...... .+.+++|+
T Consensus 100 ~~~~iyv~GG~~~~--~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd-- 175 (306)
T 3ii7_A 100 AEGKIYTSGGSEVG--NSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYD-- 175 (306)
T ss_dssp ETTEEEEECCBBTT--BSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEE--
T ss_pred ECCEEEEECCCCCC--CcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeC--
Confidence 99999999998632 23478999999999999999999999999999999999999999876554 66677776
Q ss_pred eeccccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCC
Q 013909 253 VKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPP 331 (434)
Q Consensus 253 ~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~ 331 (434)
+.+++|+.++++|.++..++++.++++|||+||.+.. ..++++++|| .+++|+.+++
T Consensus 176 -----~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~-----------------~~~~~~~~yd~~~~~W~~~~~ 233 (306)
T 3ii7_A 176 -----PATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGL-----------------GGLDNVEYYDIKLNEWKMVSP 233 (306)
T ss_dssp -----TTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETT-----------------EEBCCEEEEETTTTEEEECCC
T ss_pred -----CCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCC-----------------CCCceEEEeeCCCCcEEECCC
Confidence 8899999999999999999999999999999997654 2578899999 8889999999
Q ss_pred CCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccCCCceeeeeeEEECC
Q 013909 332 MPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKLPYRIKTTLTGFWDG 402 (434)
Q Consensus 332 ~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~ 402 (434)
+|.+|..+.+ ++++++|||+||.+... .++++++||+++++|+.++++|.+|..++++.+.+
T Consensus 234 ~p~~r~~~~~--~~~~~~i~v~GG~~~~~-------~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 295 (306)
T 3ii7_A 234 MPWKGVTVKC--AAVGSIVYVLAGFQGVG-------RLGHILEYNTETDKWVANSKVRAFPVTSCLICVVD 295 (306)
T ss_dssp CSCCBSCCEE--EEETTEEEEEECBCSSS-------BCCEEEEEETTTTEEEEEEEEECCSCTTCEEEEEE
T ss_pred CCCCccceeE--EEECCEEEEEeCcCCCe-------eeeeEEEEcCCCCeEEeCCCcccccceeEEEEECC
Confidence 9999987754 78899999999987655 56799999999999999999999999988877543
No 4
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.3e-46 Score=355.21 Aligned_cols=267 Identities=17% Similarity=0.322 Sum_probs=240.3
Q ss_pred ccceeeccCCCCcEEEcCCCCCCCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCc---eEecCCCCCCCCceee
Q 013909 96 SATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK---WVDRFDMPKDMAHSHL 172 (434)
Q Consensus 96 ~~~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~---W~~~~~~~~~~~r~~~ 172 (434)
..+++.||+.+++|+.++++|.+|.+|+++.++++||++||..+.. ..+++++||+.+++ |+.++++|. +|..|
T Consensus 30 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~-~~~~~~~~d~~~~~~~~W~~~~~~p~--~r~~~ 106 (301)
T 2vpj_A 30 IDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRS-RLSSVECLDYTADEDGVWYSVAPMNV--RRGLA 106 (301)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSC-BCCCEEEEETTCCTTCCCEEECCCSS--CCBSC
T ss_pred eeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCc-cCceEEEEECCCCCCCeeEECCCCCC--Cccce
Confidence 3489999999999999999999999999999999999999987543 56789999999999 999999887 79999
Q ss_pred EEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEEE
Q 013909 173 GVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIA 252 (434)
Q Consensus 173 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ 252 (434)
++++++++||++||.++.. .++++++||+.+++|+.++++|.+|..|+++.++++||++||..+....+.+++|+
T Consensus 107 ~~~~~~~~lyv~GG~~~~~---~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d-- 181 (301)
T 2vpj_A 107 GATTLGDMIYVSGGFDGSR---RHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYD-- 181 (301)
T ss_dssp EEEEETTEEEEECCBCSSC---BCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEE--
T ss_pred eEEEECCEEEEEcccCCCc---ccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEe--
Confidence 9999999999999987643 37899999999999999999999999999999999999999998776677777777
Q ss_pred eeccccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCC
Q 013909 253 VKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPP 331 (434)
Q Consensus 253 ~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~ 331 (434)
+.+++|+.++++|.++..++++.++++|||+||.+... .++++++|| .+++|+.+++
T Consensus 182 -----~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~-----------------~~~~v~~yd~~~~~W~~~~~ 239 (301)
T 2vpj_A 182 -----PHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTA-----------------HLSSVEAYNIRTDSWTTVTS 239 (301)
T ss_dssp -----TTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSS-----------------BCCCEEEEETTTTEEEEECC
T ss_pred -----CCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCc-----------------ccceEEEEeCCCCcEEECCC
Confidence 88999999999999998889999999999999987542 367899999 8889999999
Q ss_pred CCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccCCCceeeeeeEEEC
Q 013909 332 MPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKLPYRIKTTLTGFWD 401 (434)
Q Consensus 332 ~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~ 401 (434)
+|.+|..+++ ++++++|||+||.+... .++++++||+++++|+.+++||.+|..|+++.++
T Consensus 240 ~p~~r~~~~~--~~~~~~i~v~GG~~~~~-------~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 300 (301)
T 2vpj_A 240 MTTPRCYVGA--TVLRGRLYAIAGYDGNS-------LLSSIECYDPIIDSWEVVTSMGTQRCDAGVCVLR 300 (301)
T ss_dssp CSSCCBSCEE--EEETTEEEEECCBCSSS-------BEEEEEEEETTTTEEEEEEEEEEEEESCEEEEEE
T ss_pred CCCcccceeE--EEECCEEEEEcCcCCCc-------ccccEEEEcCCCCeEEEcCCCCcccccceEEEeC
Confidence 9999987754 78899999999987654 5679999999999999999999999999988764
No 5
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=3.6e-47 Score=361.44 Aligned_cols=282 Identities=15% Similarity=0.230 Sum_probs=241.0
Q ss_pred cceeeccCCCCcEEEcCCC--CCCCCceeEEEECCEEEEEecc-----CCCCCceeeEEEEECCCCceEecCCCCCCCCc
Q 013909 97 ATFADLPAPDLEWEQMPSA--PVPRLDGAAIQIKNLFYVFAGY-----GSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAH 169 (434)
Q Consensus 97 ~~~~~~~~~~~~W~~~~~~--p~~R~~~~~~~~~~~iyv~GG~-----~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r 169 (434)
.+++.||+.+++|+. +++ |.+|.+|++++++++|||+||. .......+++++||+.+++|+.++++|. +|
T Consensus 13 ~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r 89 (315)
T 4asc_A 13 EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPS--PR 89 (315)
T ss_dssp TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSS--CE
T ss_pred CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCc--ch
Confidence 379999999999987 666 4589999999999999999996 2223356679999999999999999886 79
Q ss_pred eeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEECCEEEEEcCC-CCCCCCCCcce
Q 013909 170 SHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGS-KENRHTPGLEH 248 (434)
Q Consensus 170 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~-~~~~~~~~~~~ 248 (434)
.+|++++++++||++||.+.......++++++||+.+++|+.++++|.+|..|+++.++++|||+||. ......+++++
T Consensus 90 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 169 (315)
T 4asc_A 90 CLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCV 169 (315)
T ss_dssp ESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEE
T ss_pred hceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEE
Confidence 99999999999999999864322355799999999999999999999999999999999999999998 45555677777
Q ss_pred EEEEeeccccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeE
Q 013909 249 WSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWK 327 (434)
Q Consensus 249 ~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~ 327 (434)
|+ +.+++|+.++++|.++..++++.++++|||+||.+... .++++++|| .+++|+
T Consensus 170 yd-------~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-----------------~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 170 YD-------PKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTG-----------------LTSSAEVYSITDNKWA 225 (315)
T ss_dssp EE-------TTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSS-----------------EEEEEEEEETTTTEEE
T ss_pred Ee-------CCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCC-----------------ccceEEEEECCCCeEE
Confidence 77 88999999999999999999999999999999987542 577899999 888999
Q ss_pred EcCCCCCCCCccceeEEEECCEEEEEcCcCCCCC--CccceeeeccEEEEECCCCceEEeccCCCceeeeeeEEECCEEE
Q 013909 328 VLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHP--MTKRMILVGEVFQFHLDSLTWSVIGKLPYRIKTTLTGFWDGWLY 405 (434)
Q Consensus 328 ~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~--~~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~l~ 405 (434)
.++++|.+|..|++ ++++++|||+||.+.... .......++++++||+++++|+.+ +|.+|..+++++++++||
T Consensus 226 ~~~~~p~~r~~~~~--~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~r~~~~~~~~~~~l~ 301 (315)
T 4asc_A 226 PFEAFPQERSSLSL--VSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV--LREIAYAAGATFLPVRLN 301 (315)
T ss_dssp EECCCSSCCBSCEE--EEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE--ESCSSCCSSCEEEEEEEC
T ss_pred ECCCCCCcccceeE--EEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh--ccCCcCccceEEeCCEEE
Confidence 99999999997754 888999999999864210 001112678999999999999999 778899999999999999
Q ss_pred EEcc
Q 013909 406 FTSG 409 (434)
Q Consensus 406 v~GG 409 (434)
++..
T Consensus 302 v~~~ 305 (315)
T 4asc_A 302 VLRL 305 (315)
T ss_dssp GGGS
T ss_pred EEEe
Confidence 9865
No 6
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=3e-46 Score=353.98 Aligned_cols=280 Identities=19% Similarity=0.336 Sum_probs=232.0
Q ss_pred CCCCCCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCC-CC
Q 013909 114 SAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGP-QC 192 (434)
Q Consensus 114 ~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~-~~ 192 (434)
+-|.+|..++++.++++||++||.. ...++++++||+.+++|+.++++|. +|.+|++++++++||++||.... ..
T Consensus 10 ~~~~~~~~~~~~~~~~~i~v~GG~~--~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~~~~~~lyv~GG~~~~~~~ 85 (308)
T 1zgk_A 10 SSGLVPRGSHAPKVGRLIYTAGGYF--RQSLSYLEAYNPSNGTWLRLADLQV--PRSGLAGCVVGGLLYAVGGRNNSPDG 85 (308)
T ss_dssp -----------CCCCCCEEEECCBS--SSBCCCEEEEETTTTEEEECCCCSS--CCBSCEEEEETTEEEEECCEEEETTE
T ss_pred cCCeeeCCccccCCCCEEEEEeCcC--CCCcceEEEEcCCCCeEeECCCCCc--ccccceEEEECCEEEEECCCcCCCCC
Confidence 3467899999999999999999982 3457889999999999999998876 78999999999999999998310 11
Q ss_pred CCCCceeEEEECCCCceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCC
Q 013909 193 RGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRG 272 (434)
Q Consensus 193 ~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~ 272 (434)
...++++++||+.+++|+.+++||.+|..|+++.++++|||+||..+....+.+++|+ +.+++|+.++++|.+
T Consensus 86 ~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd-------~~~~~W~~~~~~p~~ 158 (308)
T 1zgk_A 86 NTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYE-------PERDEWHLVAPMLTR 158 (308)
T ss_dssp EEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEE-------TTTTEEEECCCCSSC
T ss_pred CeecceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEEC-------CCCCeEeECCCCCcc
Confidence 2346899999999999999999999999999999999999999987766667777777 889999999999999
Q ss_pred CCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEEECCEEE
Q 013909 273 GPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSII 351 (434)
Q Consensus 273 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~ 351 (434)
+..++++.++++||++||.++.. .++++++|| .+++|+.++++|.+|..+++ ++++++||
T Consensus 159 r~~~~~~~~~~~iyv~GG~~~~~-----------------~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~iy 219 (308)
T 1zgk_A 159 RIGVGVAVLNRLLYAVGGFDGTN-----------------RLNSAECYYPERNEWRMITAMNTIRSGAGV--CVLHNCIY 219 (308)
T ss_dssp CBSCEEEEETTEEEEECCBCSSC-----------------BCCCEEEEETTTTEEEECCCCSSCCBSCEE--EEETTEEE
T ss_pred ccceEEEEECCEEEEEeCCCCCC-----------------cCceEEEEeCCCCeEeeCCCCCCccccceE--EEECCEEE
Confidence 99999999999999999987542 367899999 88899999999999987754 78899999
Q ss_pred EEcCcCCCCCCccceeeeccEEEEECCCCceEEeccCCCceeeeeeEEECCEEEEEccccCCC-CCCCchhhhhhccccc
Q 013909 352 ITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKLPYRIKTTLTGFWDGWLYFTSGQRDRG-PENPQPRKVIGEMWRT 430 (434)
Q Consensus 352 v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~l~v~GG~~~~~-~~~~~~~~~~~~~w~~ 430 (434)
|+||.+... .++++++||+++++|+.++++|.+|..++++.++++||++||..... ...-.++.+..+.|+.
T Consensus 220 v~GG~~~~~-------~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 292 (308)
T 1zgk_A 220 AAGGYDGQD-------QLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSE 292 (308)
T ss_dssp EECCBCSSS-------BCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred EEeCCCCCC-------ccceEEEEeCCCCcEEECCCCCCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEEee
Confidence 999988654 56899999999999999999999999999999999999999987643 2223346666777764
No 7
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=1.4e-45 Score=350.97 Aligned_cols=279 Identities=18% Similarity=0.287 Sum_probs=235.1
Q ss_pred ceeeccCCCCcEEEcCCC--CCCCCceeEEEECCEEEEEeccCCC-----CCceeeEEEEECCCCceEecCCCCCCCCce
Q 013909 98 TFADLPAPDLEWEQMPSA--PVPRLDGAAIQIKNLFYVFAGYGSL-----DYVHSHVDVYNFTDNKWVDRFDMPKDMAHS 170 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~--p~~R~~~~~~~~~~~iyv~GG~~~~-----~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~ 170 (434)
.++.||+.+++|... ++ |.+|.+|+++.++++|||+||.... ....+++++||+.+++|++++++|. +|.
T Consensus 25 ~~~~yd~~~~~W~~~-~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~ 101 (318)
T 2woz_A 25 AAVAYDPMENECYLT-ALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPS--ARC 101 (318)
T ss_dssp EEEEEETTTTEEEEE-EECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSS--CBC
T ss_pred ceEEECCCCCceecc-cCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCc--ccc
Confidence 478999999999884 44 4789999999999999999996311 1234569999999999999999887 799
Q ss_pred eeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEECCEEEEEcCCCC-CCCCCCcceE
Q 013909 171 HLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKE-NRHTPGLEHW 249 (434)
Q Consensus 171 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~ 249 (434)
.|++++++++||++||..... ...++++++||+.+++|+.++++|.+|..|+++.++++|||+||... ....+++++|
T Consensus 102 ~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y 180 (318)
T 2woz_A 102 LFGLGEVDDKIYVVAGKDLQT-EASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIY 180 (318)
T ss_dssp SCEEEEETTEEEEEEEEBTTT-CCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEE
T ss_pred ccceEEECCEEEEEcCccCCC-CcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEE
Confidence 999999999999999986422 24478999999999999999999999999999999999999999743 3346667777
Q ss_pred EEEeeccccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEE
Q 013909 250 SIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKV 328 (434)
Q Consensus 250 ~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~ 328 (434)
| +.+++|+.++++|.++..+++++++++|||+||.+... .++++++|| .+++|+.
T Consensus 181 d-------~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-----------------~~~~~~~yd~~~~~W~~ 236 (318)
T 2woz_A 181 N-------PKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDG-----------------LSASVEAFDLKTNKWEV 236 (318)
T ss_dssp E-------TTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTE-----------------EEEEEEEEETTTCCEEE
T ss_pred c-------CCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCC-----------------ccceEEEEECCCCeEEE
Confidence 6 88999999999999998889999999999999976542 577899999 8889999
Q ss_pred cCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCcc--ceeeeccEEEEECCCCceEEeccCCCceeeeeeEEECCEEEE
Q 013909 329 LPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTK--RMILVGEVFQFHLDSLTWSVIGKLPYRIKTTLTGFWDGWLYF 406 (434)
Q Consensus 329 ~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~--~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~l~v 406 (434)
++++|.+|..|. +++++++|||+||.+....... ....++++++||+++++|+.+ +|.+|..|+++.++++||+
T Consensus 237 ~~~~p~~r~~~~--~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~r~~~~~~~~~~~iyi 312 (318)
T 2woz_A 237 MTEFPQERSSIS--LVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM--LKEIRYASGASCLATRLNL 312 (318)
T ss_dssp CCCCSSCCBSCE--EEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE--ESCCGGGTTCEEEEEEEEG
T ss_pred CCCCCCcccceE--EEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh--cccccccccceeeCCEEEE
Confidence 999999998764 4889999999999875321000 011467999999999999998 8899999999999999999
Q ss_pred Ec
Q 013909 407 TS 408 (434)
Q Consensus 407 ~G 408 (434)
+.
T Consensus 313 ~~ 314 (318)
T 2woz_A 313 FK 314 (318)
T ss_dssp GG
T ss_pred EE
Confidence 74
No 8
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=2.1e-45 Score=347.07 Aligned_cols=288 Identities=17% Similarity=0.277 Sum_probs=237.1
Q ss_pred HHHHHHHHHhcCCCCCCcCcceeeeeecccccCCceEEecCCCCCccccce--eeeEEEccCCcchhhhhccceeeccCC
Q 013909 28 AALIADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQR--ESVAVIDKKGQDAERFLSATFADLPAP 105 (434)
Q Consensus 28 ~~~~~~~l~~~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~--~g~~v~~~~~~~~~~~~~~~~~~~~~~ 105 (434)
.+.+++.||++||.. . ..++++++||+.+++|..+++|+.+|..+.. .+-.++.-++......+ .+++.||+.
T Consensus 11 ~~~~~~~i~v~GG~~-~---~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~-~~~~~~d~~ 85 (302)
T 2xn4_A 11 PMNLPKLMVVVGGQA-P---KAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRV-RTVDSYDPV 85 (302)
T ss_dssp ----CEEEEEECCBS-S---SBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBC-CCEEEEETT
T ss_pred ccCCCCEEEEECCCC-C---CCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccc-cceEEECCC
Confidence 345678999999983 2 3678999999999999999999999843321 11112222222222233 489999999
Q ss_pred CCcEEEcCCCCCCCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEe
Q 013909 106 DLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVS 185 (434)
Q Consensus 106 ~~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~G 185 (434)
+++|+.++++|.+|..|+++.++++|||+||.++.. .++++++||+.+++|+.++++|. +|..|++++++++||++|
T Consensus 86 ~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~~~~~~iyv~G 162 (302)
T 2xn4_A 86 KDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGST-GLSSVEAYNIKSNEWFHVAPMNT--RRSSVGVGVVGGLLYAVG 162 (302)
T ss_dssp TTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSC-EEEEEEEEETTTTEEEEECCCSS--CCBSCEEEEETTEEEEEC
T ss_pred CCceeeCCCCCccccceEEEEECCEEEEEcCCCCCc-cCceEEEEeCCCCeEeecCCCCC--cccCceEEEECCEEEEEe
Confidence 999999999999999999999999999999997654 57889999999999999999887 799999999999999999
Q ss_pred ccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEE
Q 013909 186 GQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRT 265 (434)
Q Consensus 186 G~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~ 265 (434)
|.+... ...++++++||+.+++|+.+++||.+|..|+++.++++|||+||.++....+.+++|| +.+++|+.
T Consensus 163 G~~~~~-~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd-------~~~~~W~~ 234 (302)
T 2xn4_A 163 GYDVAS-RQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYD-------PTTNAWRQ 234 (302)
T ss_dssp CEETTT-TEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEE-------TTTTEEEE
T ss_pred CCCCCC-CccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEe-------CCCCCEee
Confidence 986643 1346899999999999999999999999999999999999999998766667777777 78999999
Q ss_pred ccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcC-CCCCCCCccceeE
Q 013909 266 EIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLP-PMPKPNSHIECAW 343 (434)
Q Consensus 266 ~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~-~~p~~r~~~~~~~ 343 (434)
++++|.++..++++.++++|||+||.++.. .++++++|| .+++|+.++ ++|.+|..|++
T Consensus 235 ~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~-----------------~~~~v~~yd~~~~~W~~~~~~~~~~r~~~~~-- 295 (302)
T 2xn4_A 235 VADMNMCRRNAGVCAVNGLLYVVGGDDGSC-----------------NLASVEYYNPTTDKWTVVSSCMSTGRSYAGV-- 295 (302)
T ss_dssp ECCCSSCCBSCEEEEETTEEEEECCBCSSS-----------------BCCCEEEEETTTTEEEECSSCCSSCCBSCEE--
T ss_pred CCCCCCccccCeEEEECCEEEEECCcCCCc-----------------ccccEEEEcCCCCeEEECCcccCcccccceE--
Confidence 999998888889999999999999986542 467899999 888999997 89999988754
Q ss_pred EEECCEE
Q 013909 344 VIVNNSI 350 (434)
Q Consensus 344 ~~~~~~i 350 (434)
++++++|
T Consensus 296 ~~~~~~i 302 (302)
T 2xn4_A 296 TVIDKRL 302 (302)
T ss_dssp EEEEC--
T ss_pred EEecccC
Confidence 7777664
No 9
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=1.6e-45 Score=356.20 Aligned_cols=281 Identities=18% Similarity=0.249 Sum_probs=227.1
Q ss_pred EcCCCCCCCCceeEEEECCEEEEEeccCCCCCceeeEEEEECC--CCceEecCCCC-CCCCceeeEEEEeCCEEEEEecc
Q 013909 111 QMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFT--DNKWVDRFDMP-KDMAHSHLGVVSDGRYIYIVSGQ 187 (434)
Q Consensus 111 ~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~--t~~W~~~~~~~-~~~~r~~~~~~~~~~~lyv~GG~ 187 (434)
.+++||.+|.++++++++++|||+||... +++++||+. +++|+.++++| . +|.+|++++++++|||+||.
T Consensus 2 ~l~~lP~~r~~~~~~~~~~~iyv~GG~~~-----~~~~~~d~~~~~~~W~~~~~~p~~--~R~~~~~~~~~~~lyv~GG~ 74 (357)
T 2uvk_A 2 VLPETPVPFKSGTGAIDNDTVYIGLGSAG-----TAWYKLDTQAKDKKWTALAAFPGG--PRDQATSAFIDGNLYVFGGI 74 (357)
T ss_dssp CSCCCSSCCCSCEEEEETTEEEEECGGGT-----TCEEEEETTSSSCCEEECCCCTTC--CCBSCEEEEETTEEEEECCE
T ss_pred CCCCCCccccceEEEEECCEEEEEeCcCC-----CeEEEEccccCCCCeeECCCCCCC--cCccceEEEECCEEEEEcCC
Confidence 47899999999999999999999999864 359999998 49999999988 4 79999999999999999998
Q ss_pred -C-CCCCCCCCceeEEEECCCCceEecCCCC-CCcccceEEEECCEEEEEcCCCCCC-----------------------
Q 013909 188 -Y-GPQCRGPTSRTFVLDSETRKWDSIPPLP-SPRYSPATQLWRGRLHVMGGSKENR----------------------- 241 (434)
Q Consensus 188 -~-~~~~~~~~~~~~~yd~~t~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~----------------------- 241 (434)
+ .......++++++||+.+++|+++++|+ .+|..|+++..+++|||+||.....
T Consensus 75 ~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (357)
T 2uvk_A 75 GKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINA 154 (357)
T ss_dssp EECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhh
Confidence 3 1222345789999999999999999998 9999999999999999999986432
Q ss_pred -----------CCCCcceEEEEeeccccccCceEEccCCCCCCC-ceeEEEECCEEEEEcCCCCCCCCCCCCCccccccc
Q 013909 242 -----------HTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGP-HRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRR 309 (434)
Q Consensus 242 -----------~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~ 309 (434)
..+.+++|+ +.+++|+.++++|.++. +++++..+++|||+||.....
T Consensus 155 ~~~~~~~~~~~~~~~v~~yd-------~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~-------------- 213 (357)
T 2uvk_A 155 HYFDKKAEDYFFNKFLLSFD-------PSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPG-------------- 213 (357)
T ss_dssp HHHSSCGGGGCCCCEEEEEE-------TTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETT--------------
T ss_pred hhccccccccCCcccEEEEe-------CCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCC--------------
Confidence 245555565 88999999999886544 478999999999999975432
Q ss_pred cceeeCcEEEeC---CCCCeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCC----------ccceeeeccEEEEE
Q 013909 310 HEVVYGDVYMLD---DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPM----------TKRMILVGEVFQFH 376 (434)
Q Consensus 310 ~~~~~~~v~~yd---~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~----------~~~~~~~~~v~~yd 376 (434)
...+++++|| .+++|+.++++|.||.++.+++++.+++|||+||.+..... ......++++++||
T Consensus 214 --~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd 291 (357)
T 2uvk_A 214 --LRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHL 291 (357)
T ss_dssp --EECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEE
T ss_pred --cccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEe
Confidence 2467888886 56799999999999888777789999999999997543210 00001356899999
Q ss_pred CCCCceEEeccCCCceeeeeeEEECCEEEEEccccCCCCCCCchh
Q 013909 377 LDSLTWSVIGKLPYRIKTTLTGFWDGWLYFTSGQRDRGPENPQPR 421 (434)
Q Consensus 377 ~~~~~W~~~~~lp~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~ 421 (434)
+++++|+.++++|.+|..++++.++++|||+||.+..+.....++
T Consensus 292 ~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~ 336 (357)
T 2uvk_A 292 WHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSV 336 (357)
T ss_dssp CC---CEEEEECSSCCBSSEEEEETTEEEEEEEECGGGCEEEEEE
T ss_pred cCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCCCCCEeeeEE
Confidence 999999999999999999999999999999999887665544444
No 10
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=2.6e-44 Score=339.41 Aligned_cols=266 Identities=18% Similarity=0.299 Sum_probs=229.3
Q ss_pred ECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 127 IKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 127 ~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
++++||++||........+++++||+.+++|+.++++|. +|..|++++.+++||++||.++. ...+++++||+.+
T Consensus 13 ~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~~~~~~l~v~GG~~~~---~~~~~~~~~d~~~ 87 (301)
T 2vpj_A 13 ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITR--KRRYVASVSLHDRIYVIGGYDGR---SRLSSVECLDYTA 87 (301)
T ss_dssp CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSS--CCBSCEEEEETTEEEEECCBCSS---CBCCCEEEEETTC
T ss_pred CCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCCh--hhccccEEEECCEEEEEcCCCCC---ccCceEEEEECCC
Confidence 588999999954444567889999999999999998876 78999999999999999998743 3478999999999
Q ss_pred Cc---eEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEECC
Q 013909 207 RK---WDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFND 283 (434)
Q Consensus 207 ~~---W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~ 283 (434)
++ |+.++++|.+|..|+++.++++|||+||..+....+.+++|+ +.+++|+.++++|.++..++++.+++
T Consensus 88 ~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d-------~~~~~W~~~~~~p~~r~~~~~~~~~~ 160 (301)
T 2vpj_A 88 DEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYD-------PNIDQWSMLGDMQTAREGAGLVVASG 160 (301)
T ss_dssp CTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEE-------TTTTEEEEEEECSSCCBSCEEEEETT
T ss_pred CCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEc-------CCCCeEEECCCCCCCcccceEEEECC
Confidence 99 999999999999999999999999999998766666666666 88999999999999999899999999
Q ss_pred EEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCC
Q 013909 284 RLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPM 362 (434)
Q Consensus 284 ~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~ 362 (434)
+||++||.++.. .++++++|| .+++|+.++++|.+|..|. +++.+++|||+||.+...
T Consensus 161 ~iyv~GG~~~~~-----------------~~~~~~~~d~~~~~W~~~~~~p~~r~~~~--~~~~~~~i~v~GG~~~~~-- 219 (301)
T 2vpj_A 161 VIYCLGGYDGLN-----------------ILNSVEKYDPHTGHWTNVTPMATKRSGAG--VALLNDHIYVVGGFDGTA-- 219 (301)
T ss_dssp EEEEECCBCSSC-----------------BCCCEEEEETTTTEEEEECCCSSCCBSCE--EEEETTEEEEECCBCSSS--
T ss_pred EEEEECCCCCCc-----------------ccceEEEEeCCCCcEEeCCCCCcccccce--EEEECCEEEEEeCCCCCc--
Confidence 999999986542 478899999 8889999999999998765 488899999999987654
Q ss_pred ccceeeeccEEEEECCCCceEEeccCCCceeeeeeEEECCEEEEEccccCCCC-CCCchhhhhhccccc
Q 013909 363 TKRMILVGEVFQFHLDSLTWSVIGKLPYRIKTTLTGFWDGWLYFTSGQRDRGP-ENPQPRKVIGEMWRT 430 (434)
Q Consensus 363 ~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~l~v~GG~~~~~~-~~~~~~~~~~~~w~~ 430 (434)
.++++++||+++++|+.++++|.+|..++++.++++||++||...... ..-.++.+..+.|+.
T Consensus 220 -----~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 283 (301)
T 2vpj_A 220 -----HLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEV 283 (301)
T ss_dssp -----BCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEEE
T ss_pred -----ccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEEE
Confidence 467999999999999999999999999999999999999999765431 222345566677763
No 11
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=4.7e-44 Score=338.48 Aligned_cols=264 Identities=19% Similarity=0.267 Sum_probs=227.9
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~ 207 (434)
.+.||++||... .+++++||+.+++|+.++++|. +|.+|++++++++||++||.+ ...++++++||+.++
T Consensus 11 ~~~l~~~GG~~~----~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~~~~~~lyv~GG~~----~~~~~~~~~~d~~~~ 80 (306)
T 3ii7_A 11 HDYRIALFGGSQ----PQSCRYFNPKDYSWTDIRCPFE--KRRDAACVFWDNVVYILGGSQ----LFPIKRMDCYNVVKD 80 (306)
T ss_dssp CCEEEEEECCSS----TTSEEEEETTTTEEEECCCCSC--CCBSCEEEEETTEEEEECCBS----SSBCCEEEEEETTTT
T ss_pred cceEEEEeCCCC----CceEEEecCCCCCEecCCCCCc--ccceeEEEEECCEEEEEeCCC----CCCcceEEEEeCCCC
Confidence 478999999865 5679999999999999999876 799999999999999999987 234799999999999
Q ss_pred ceEecCCCCCCcccceEEEECCEEEEEcCCC-CCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEECCEEE
Q 013909 208 KWDSIPPLPSPRYSPATQLWRGRLHVMGGSK-ENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLF 286 (434)
Q Consensus 208 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iy 286 (434)
+|+.++++|.+|..|+++.++++|||+||.+ +....+.+++|+ +.+++|+.++++|.++..|+++.++++||
T Consensus 81 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d-------~~~~~W~~~~~~p~~r~~~~~~~~~~~iy 153 (306)
T 3ii7_A 81 SWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYD-------TRTESWHTKPSMLTQRCSHGMVEANGLIY 153 (306)
T ss_dssp EEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEE-------TTTTEEEEECCCSSCCBSCEEEEETTEEE
T ss_pred eEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEe-------CCCCceEeCCCCcCCcceeEEEEECCEEE
Confidence 9999999999999999999999999999987 555567777777 88999999999999999999999999999
Q ss_pred EEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccc
Q 013909 287 VVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKR 365 (434)
Q Consensus 287 v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~ 365 (434)
++||...... ....++++++|| .+++|+.++++|.+|..|.+ ++.+++|||+||.+...
T Consensus 154 v~GG~~~~~~-------------~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~i~v~GG~~~~~----- 213 (306)
T 3ii7_A 154 VCGGSLGNNV-------------SGRVLNSCEVYDPATETWTELCPMIEARKNHGL--VFVKDKIFAVGGQNGLG----- 213 (306)
T ss_dssp EECCEESCTT-------------TCEECCCEEEEETTTTEEEEECCCSSCCBSCEE--EEETTEEEEECCEETTE-----
T ss_pred EECCCCCCCC-------------cccccceEEEeCCCCCeEEECCCccchhhcceE--EEECCEEEEEeCCCCCC-----
Confidence 9999765421 112478999999 88899999999999987754 88899999999987654
Q ss_pred eeeeccEEEEECCCCceEEeccCCCceeeeeeEEECCEEEEEccccCCCC-CCCchhhhhhccccc
Q 013909 366 MILVGEVFQFHLDSLTWSVIGKLPYRIKTTLTGFWDGWLYFTSGQRDRGP-ENPQPRKVIGEMWRT 430 (434)
Q Consensus 366 ~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~l~v~GG~~~~~~-~~~~~~~~~~~~w~~ 430 (434)
.++++++||+++++|+.++++|.+|..++++.++++|||+||....+. ..-.++....+.|+.
T Consensus 214 --~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~ 277 (306)
T 3ii7_A 214 --GLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVA 277 (306)
T ss_dssp --EBCCEEEEETTTTEEEECCCCSCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred --CCceEEEeeCCCCcEEECCCCCCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence 678999999999999999999999999999999999999999876532 222345666677764
No 12
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=2.7e-43 Score=334.72 Aligned_cols=244 Identities=19% Similarity=0.355 Sum_probs=212.5
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCC---CCCCCCceeEEEEC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGP---QCRGPTSRTFVLDS 204 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~---~~~~~~~~~~~yd~ 204 (434)
++.||++|| +++++||+.+++|+. +++|.|.+|.+|++++.+++||++||.... ......+++++||+
T Consensus 4 ~~~l~~~GG--------~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~ 74 (315)
T 4asc_A 4 QDLIFMISE--------EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDH 74 (315)
T ss_dssp EEEEEEEET--------TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEET
T ss_pred ceEEEEEcC--------CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecC
Confidence 467999999 459999999999997 778777789999999999999999997321 11123466999999
Q ss_pred CCCceEecCCCCCCcccceEEEECCEEEEEcCCC---CCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEE
Q 013909 205 ETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSK---ENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVF 281 (434)
Q Consensus 205 ~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~---~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~ 281 (434)
.+++|+.+++||.+|..|+++.++++|||+||.. +....+++++|+ +.+++|+.++++|.++..|+++.+
T Consensus 75 ~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d-------~~~~~W~~~~~~p~~r~~~~~~~~ 147 (315)
T 4asc_A 75 LDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYD-------RLSFKWGESDPLPYVVYGHTVLSH 147 (315)
T ss_dssp TTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEE-------TTTTEEEECCCCSSCCBSCEEEEE
T ss_pred CCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEEC-------CCCCcEeECCCCCCcccceeEEEE
Confidence 9999999999999999999999999999999974 244566677776 889999999999999999999999
Q ss_pred CCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCC
Q 013909 282 NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKH 360 (434)
Q Consensus 282 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~ 360 (434)
+++|||+||..... ..++++++|| .+++|+.++++|.||..|++ ++++++|||+||.+...
T Consensus 148 ~~~iyv~GG~~~~~----------------~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~iyv~GG~~~~~ 209 (315)
T 4asc_A 148 MDLVYVIGGKGSDR----------------KCLNKMCVYDPKKFEWKELAPMQTARSLFGA--TVHDGRIIVAAGVTDTG 209 (315)
T ss_dssp TTEEEEECCBCTTS----------------CBCCCEEEEETTTTEEEECCCCSSCCBSCEE--EEETTEEEEEEEECSSS
T ss_pred CCEEEEEeCCCCCC----------------cccceEEEEeCCCCeEEECCCCCCchhceEE--EEECCEEEEEeccCCCC
Confidence 99999999984332 2578999999 88899999999999988754 78899999999987665
Q ss_pred CCccceeeeccEEEEECCCCceEEeccCCCceeeeeeEEECCEEEEEccccC
Q 013909 361 PMTKRMILVGEVFQFHLDSLTWSVIGKLPYRIKTTLTGFWDGWLYFTSGQRD 412 (434)
Q Consensus 361 ~~~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~l~v~GG~~~ 412 (434)
.++++++||+++++|+.++++|.+|..++++.++++||++||...
T Consensus 210 -------~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~ 254 (315)
T 4asc_A 210 -------LTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFAT 254 (315)
T ss_dssp -------EEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEEE
T ss_pred -------ccceEEEEECCCCeEEECCCCCCcccceeEEEECCEEEEECCccc
Confidence 678999999999999999999999999999999999999999865
No 13
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=9.3e-43 Score=336.79 Aligned_cols=307 Identities=17% Similarity=0.163 Sum_probs=220.7
Q ss_pred EecCCCCCccccce--eeeEEEccCCcchhhhhccceeeccCC--CCcEEEcCCCC-CCCCceeEEEECCEEEEEecc-C
Q 013909 65 VIPHVNATKIDRQR--ESVAVIDKKGQDAERFLSATFADLPAP--DLEWEQMPSAP-VPRLDGAAIQIKNLFYVFAGY-G 138 (434)
Q Consensus 65 ~~~~~~~~r~~~~~--~g~~v~~~~~~~~~~~~~~~~~~~~~~--~~~W~~~~~~p-~~R~~~~~~~~~~~iyv~GG~-~ 138 (434)
.+|+|+.+|..+.. .+-.++..++.. ..+++.||+. +++|+.++++| .+|.+|++++++++|||+||. .
T Consensus 2 ~l~~lP~~r~~~~~~~~~~~iyv~GG~~-----~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~ 76 (357)
T 2uvk_A 2 VLPETPVPFKSGTGAIDNDTVYIGLGSA-----GTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGK 76 (357)
T ss_dssp CSCCCSSCCCSCEEEEETTEEEEECGGG-----TTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEE
T ss_pred CCCCCCccccceEEEEECCEEEEEeCcC-----CCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCC
Confidence 46788888833211 011122222222 2379999987 48999999999 899999999999999999998 2
Q ss_pred ---CCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCC------------------------
Q 013909 139 ---SLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQ------------------------ 191 (434)
Q Consensus 139 ---~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~------------------------ 191 (434)
.....++++|+||+.+++|+++++++ |.+|..|++++.+++|||+||.+...
T Consensus 77 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (357)
T 2uvk_A 77 NSEGLTQVFNDVHKYNPKTNSWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAH 155 (357)
T ss_dssp CTTSCEEECCCEEEEETTTTEEEECSCCC-SSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCccceeeccEEEEeCCCCcEEECCCCC-CcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhh
Confidence 23346788999999999999999988 56899999999999999999975431
Q ss_pred -------CCCCCceeEEEECCCCceEecCCCCCCccc-ceEEEECCEEEEEcCCCCCC-CCCCcceEEEEeeccccccCc
Q 013909 192 -------CRGPTSRTFVLDSETRKWDSIPPLPSPRYS-PATQLWRGRLHVMGGSKENR-HTPGLEHWSIAVKDGKALEKA 262 (434)
Q Consensus 192 -------~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~-~~~~~~~~~~~~~~~~~~~~~ 262 (434)
....++++++||+.+++|+.+++||.+|.. |+++.++++|||+||..... ....+.+|+ +|+.+++
T Consensus 156 ~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d-----~d~~~~~ 230 (357)
T 2uvk_A 156 YFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELD-----FTGNNLK 230 (357)
T ss_dssp HHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEE-----CC---CE
T ss_pred hccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEE-----ecCCCCc
Confidence 001358999999999999999999977555 99999999999999976432 233444444 3478999
Q ss_pred eEEccCCC--CCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCcc
Q 013909 263 WRTEIPIP--RGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHI 339 (434)
Q Consensus 263 W~~~~~~p--~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~ 339 (434)
|+.++++| +.+..+++++++++|||+||.+.....................++++++|| .+++|+.++++|.+|..|
T Consensus 231 W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 310 (357)
T 2uvk_A 231 WNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYG 310 (357)
T ss_dssp EEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSS
T ss_pred EEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccc
Confidence 99988774 556677899999999999996532100000000000000011356799999 888999999999999986
Q ss_pred ceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccCCC
Q 013909 340 ECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKLPY 390 (434)
Q Consensus 340 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~lp~ 390 (434)
.+ ++.+++|||+||.+.... .++++++|+.++++|.++.++|.
T Consensus 311 ~~--~~~~~~i~v~GG~~~~~~------~~~~v~~l~~~~~~~~~~~~~~~ 353 (357)
T 2uvk_A 311 VS--LPWNNSLLIIGGETAGGK------AVTDSVLITVKDNKVTVQNLEHH 353 (357)
T ss_dssp EE--EEETTEEEEEEEECGGGC------EEEEEEEEEC-CCSCEEEC----
T ss_pred ee--EEeCCEEEEEeeeCCCCC------EeeeEEEEEEcCcEeEeeecccc
Confidence 54 889999999999886554 57899999999999999877664
No 14
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=3.8e-43 Score=334.13 Aligned_cols=290 Identities=16% Similarity=0.298 Sum_probs=228.5
Q ss_pred HHHHHhcCCCCCCcCcceeeeeecccccCCceEEecCCC--CCccccce---ee-eEEEccCCcc---hhhhhccceeec
Q 013909 32 ADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVN--ATKIDRQR---ES-VAVIDKKGQD---AERFLSATFADL 102 (434)
Q Consensus 32 ~~~l~~~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~--~~r~~~~~---~g-~~v~~~~~~~---~~~~~~~~~~~~ 102 (434)
++.||++||. .+++|||.+++|... +++ .+|..+.. .+ +.+.++.... ....+...++.|
T Consensus 15 ~~~i~~~GG~----------~~~~yd~~~~~W~~~-~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~ 83 (318)
T 2woz_A 15 KDLILLVNDT----------AAVAYDPMENECYLT-ALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQL 83 (318)
T ss_dssp EEEEEEECSS----------EEEEEETTTTEEEEE-EECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEE
T ss_pred cchhhhcccc----------ceEEECCCCCceecc-cCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEE
Confidence 4688999996 479999999999984 444 45532211 11 1222221111 112334468999
Q ss_pred cCCCCcEEEcCCCCCCCCceeEEEECCEEEEEeccCC-CCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEE
Q 013909 103 PAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGS-LDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYI 181 (434)
Q Consensus 103 ~~~~~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~-~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~l 181 (434)
|+.+++|+.++++|.+|..|++++++++|||+||... ....++++++||+.+++|+.++++|. +|.+|++++.+++|
T Consensus 84 d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~~~~~~~~~i 161 (318)
T 2woz_A 84 DNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPI--KVYGHNVISHNGMI 161 (318)
T ss_dssp ETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSS--CEESCEEEEETTEE
T ss_pred eCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCC--cccccEEEEECCEE
Confidence 9999999999999999999999999999999999863 34567899999999999999998877 79999999999999
Q ss_pred EEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccC
Q 013909 182 YIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEK 261 (434)
Q Consensus 182 yv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (434)
|++||..... ..++++++||+.+++|+.++++|.+|..|++++++++|||+||.......+.+++|+ +.++
T Consensus 162 yv~GG~~~~~--~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd-------~~~~ 232 (318)
T 2woz_A 162 YCLGGKTDDK--KCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFD-------LKTN 232 (318)
T ss_dssp EEECCEESSS--CBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEE-------TTTC
T ss_pred EEEcCCCCCC--CccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEE-------CCCC
Confidence 9999985432 347899999999999999999999999999999999999999987654444444444 8899
Q ss_pred ceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccc
Q 013909 262 AWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIE 340 (434)
Q Consensus 262 ~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~ 340 (434)
+|+.++++|.++..++++.++++||++||.+.... ..........+++++|| .+++|+++ +|.+|..|+
T Consensus 233 ~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~--------~~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~r~~~~ 302 (318)
T 2woz_A 233 KWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQL--------ESKEFAPTEVNDIWKYEDDKKEWAGM--LKEIRYASG 302 (318)
T ss_dssp CEEECCCCSSCCBSCEEEEETTEEEEECCBCCBC------------CCBCCBCCCEEEEETTTTEEEEE--ESCCGGGTT
T ss_pred eEEECCCCCCcccceEEEEECCEEEEECCeeccCC--------CCceeccceeeeEEEEeCCCCEehhh--ccccccccc
Confidence 99999999999988899999999999999864310 00000112468999999 88899999 788888776
Q ss_pred eeEEEECCEEEEEcC
Q 013909 341 CAWVIVNNSIIITGG 355 (434)
Q Consensus 341 ~~~~~~~~~i~v~GG 355 (434)
+ ++++++|||+.-
T Consensus 303 ~--~~~~~~iyi~~~ 315 (318)
T 2woz_A 303 A--SCLATRLNLFKL 315 (318)
T ss_dssp C--EEEEEEEEGGGC
T ss_pred c--eeeCCEEEEEEe
Confidence 5 889999999753
No 15
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=6.7e-38 Score=327.15 Aligned_cols=268 Identities=13% Similarity=0.177 Sum_probs=213.4
Q ss_pred cEEEcCCCCCCCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCceEecC-CCC---CCCCceeeEEEEe--CCEE
Q 013909 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRF-DMP---KDMAHSHLGVVSD--GRYI 181 (434)
Q Consensus 108 ~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~-~~~---~~~~r~~~~~~~~--~~~l 181 (434)
+|...+..|.+|.+++++ ++++|||+||... ...+++++||+.+++|+.++ ++| .|.+|.+|+++++ +++|
T Consensus 378 ~~~~~~~~p~rr~g~~~~-~~~~iyv~GG~~~--~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~l 454 (695)
T 2zwa_A 378 QLLECECPINRKFGDVDV-AGNDVFYMGGSNP--YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQL 454 (695)
T ss_dssp EEEECCCTTCCBSCEEEE-CSSCEEEECCBSS--SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEE
T ss_pred eEeccCCCCCCceeEEEE-ECCEEEEECCCCC--CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEE
Confidence 566666667777665544 8999999999976 46788999999999999998 633 3458999999999 9999
Q ss_pred EEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEE-CCEEEEEcCCCCCCCCCCcceEEEEeecccccc
Q 013909 182 YIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW-RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALE 260 (434)
Q Consensus 182 yv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~ 260 (434)
||+||.+... ..++++|+||+.+++|+.+++||.+|..|+++++ +++|||+||..... .+++|| +.+
T Consensus 455 yv~GG~~~~~--~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~---~v~~yd-------~~t 522 (695)
T 2zwa_A 455 LLIGGRKAPH--QGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP---AMLLYN-------VTE 522 (695)
T ss_dssp EEECCBSSTT--CBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC---SEEEEE-------TTT
T ss_pred EEEcCCCCCC--CccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC---CEEEEE-------CCC
Confidence 9999987653 2478999999999999999999999999999996 99999999987654 555555 889
Q ss_pred CceEEccC---CCCCCCceeEEEEC---CEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCC------eE
Q 013909 261 KAWRTEIP---IPRGGPHRACFVFN---DRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMK------WK 327 (434)
Q Consensus 261 ~~W~~~~~---~p~~~~~~~~~~~~---~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~------W~ 327 (434)
++|+.+++ +|.++..+++++++ ++|||+||...... ..++++++|| .+++ |+
T Consensus 523 ~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~---------------~~~~~v~~yd~~~~~w~~~~~W~ 587 (695)
T 2zwa_A 523 EIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQT---------------TVSDKAIIFKYDAENATEPITVI 587 (695)
T ss_dssp TEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSS---------------CBCCEEEEEEECTTCSSCCEEEE
T ss_pred CceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCC---------------eeeCcEEEEEccCCccccceEEE
Confidence 99999876 78788888877776 99999999854321 2568999999 8888 89
Q ss_pred EcCCC-CCCCCccceeEEEEC-CEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccCCC--------ceeeeee
Q 013909 328 VLPPM-PKPNSHIECAWVIVN-NSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKLPY--------RIKTTLT 397 (434)
Q Consensus 328 ~~~~~-p~~r~~~~~~~~~~~-~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~lp~--------~r~~~~~ 397 (434)
.+.++ +.+|..|+ +++++ ++|||+||.+...... ..+++++||+++++|+.+ ++|. .+..|++
T Consensus 588 ~~~~~p~~~R~~~~--~~~~~~~~iyv~GG~~~~~~~~----~~~~v~~yd~~t~~W~~~-~~p~~~~~~~~p~~~gh~~ 660 (695)
T 2zwa_A 588 KKLQHPLFQRYGSQ--IKYITPRKLLIVGGTSPSGLFD----RTNSIISLDPLSETLTSI-PISRRIWEDHSLMLAGFSL 660 (695)
T ss_dssp EEEECGGGCCBSCE--EEEEETTEEEEECCBCSSCCCC----TTTSEEEEETTTTEEEEC-CCCHHHHHHSCCCCSSCEE
T ss_pred EcCCCCCCCcccce--EEEeCCCEEEEECCccCCCCCC----CCCeEEEEECCCCeEEEe-eccccccCCCCccceeeeE
Confidence 98775 47787764 47777 9999999987543211 457999999999999965 3332 2455777
Q ss_pred EEECC-EEEEEccccC
Q 013909 398 GFWDG-WLYFTSGQRD 412 (434)
Q Consensus 398 ~~~~~-~l~v~GG~~~ 412 (434)
+.+++ +|||+||...
T Consensus 661 ~~~~~g~i~v~GGg~~ 676 (695)
T 2zwa_A 661 VSTSMGTIHIIGGGAT 676 (695)
T ss_dssp ECC---CEEEECCEEE
T ss_pred EEeCCCEEEEEeCCcc
Confidence 77766 9999999653
No 16
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=100.00 E-value=1.4e-38 Score=331.59 Aligned_cols=327 Identities=9% Similarity=0.026 Sum_probs=236.9
Q ss_pred eeecccccCCceEEecCCCCCccccce---eeeE-EEccCCcch---hhhhccceeeccCCCCcEEEcCCCCCCCCcee-
Q 013909 52 VASNWALEKSGVVVIPHVNATKIDRQR---ESVA-VIDKKGQDA---ERFLSATFADLPAPDLEWEQMPSAPVPRLDGA- 123 (434)
Q Consensus 52 ~~~~yd~~~~~W~~~~~~~~~r~~~~~---~g~~-v~~~~~~~~---~~~~~~~~~~~~~~~~~W~~~~~~p~~R~~~~- 123 (434)
.++.|||.+++|..+++|+...+.... .+.. +.++..... ...-...++.||+.+++|+.++.+|.+|..++
T Consensus 167 ~~~~~dp~~~~W~~~~~~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~ 246 (656)
T 1k3i_A 167 SYTAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCP 246 (656)
T ss_dssp CCCCCCTTSCEEEEEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSC
T ss_pred ccccCCCCCCeeeeeccCCCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccc
Confidence 467899999999999988663322111 1112 222211110 01112368999999999999999998887553
Q ss_pred -EE-EECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeE
Q 013909 124 -AI-QIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTF 200 (434)
Q Consensus 124 -~~-~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~ 200 (434)
++ ..+++||++||.... ++++||+.+++|+++++|+. +|..|+++++ +++|||+||..... ..+++++
T Consensus 247 ~~~~~~~g~lyv~GG~~~~-----~v~~yd~~t~~W~~~~~~~~--~R~~~s~~~~~dg~iyv~GG~~~~~--~~~~~~e 317 (656)
T 1k3i_A 247 GISMDGNGQIVVTGGNDAK-----KTSLYDSSSDSWIPGPDMQV--ARGYQSSATMSDGRVFTIGGSWSGG--VFEKNGE 317 (656)
T ss_dssp EEEECTTSCEEEECSSSTT-----CEEEEEGGGTEEEECCCCSS--CCSSCEEEECTTSCEEEECCCCCSS--SCCCCEE
T ss_pred cccCCCCCCEEEeCCCCCC-----ceEEecCcCCceeECCCCCc--cccccceEEecCCeEEEEeCcccCC--cccccce
Confidence 33 358999999998643 59999999999999999987 7999999998 99999999953322 2468999
Q ss_pred EEECCCCceEec-----CCCCCCcccceEEEECCEEEEEcCCCCCC----CCCCcceEEEEeeccccccCceEEccCCCC
Q 013909 201 VLDSETRKWDSI-----PPLPSPRYSPATQLWRGRLHVMGGSKENR----HTPGLEHWSIAVKDGKALEKAWRTEIPIPR 271 (434)
Q Consensus 201 ~yd~~t~~W~~~-----~~~p~~r~~~~~~~~~~~iyv~GG~~~~~----~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~ 271 (434)
+||+.+++|+.+ .+|+.+|. ++++..++++|++||.++.. ....++.|+ +.+++|......++
T Consensus 318 ~yd~~t~~W~~~~~~~~~p~~~~~~-~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd-------~~~~~w~~~~~~~~ 389 (656)
T 1k3i_A 318 VYSPSSKTWTSLPNAKVNPMLTADK-QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYY-------TSGSGDVKSAGKRQ 389 (656)
T ss_dssp EEETTTTEEEEETTSCSGGGCCCCT-TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEE-------CSTTCEEEEEEECE
T ss_pred EeCCCCCcceeCCCccccccccccc-cceeecCCceEEEECCCCcEEEecCccceeeee-------cCCcceeecCCccc
Confidence 999999999997 45666655 35566899999999986542 234455555 78899876433221
Q ss_pred -------CCCceeEEE---ECCEEEEEcCCCCCCCCCCCCCccccccccceeeC---cEEEeC-CCCCeEEcC--CCCCC
Q 013909 272 -------GGPHRACFV---FNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYG---DVYMLD-DEMKWKVLP--PMPKP 335 (434)
Q Consensus 272 -------~~~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~yd-~~~~W~~~~--~~p~~ 335 (434)
.+..+++++ .+++||++||...... ...++ ++++|| .+++|+.+. +||.+
T Consensus 390 ~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~--------------~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~ 455 (656)
T 1k3i_A 390 SNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQD--------------SDATTNAHIITLGEPGTSPNTVFASNGLYFA 455 (656)
T ss_dssp ETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSS--------------SBCCCCEEEEECCSTTSCCEEEECTTCCSSC
T ss_pred cccccCCCCCCCceEeccCCCCeEEEEeCCCCCCC--------------CCcCCcceEEEcCCCCCCCeeEEccCCCCCC
Confidence 122234443 4899999999653210 01223 689999 788999986 89999
Q ss_pred CCccceeEEEE-CCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccCCCceeeeeeEEE--CCEEEEEccccC
Q 013909 336 NSHIECAWVIV-NNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKLPYRIKTTLTGFW--DGWLYFTSGQRD 412 (434)
Q Consensus 336 r~~~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~--~~~l~v~GG~~~ 412 (434)
|..+.+ +++ +++|||+||.+...... ....++++++||+++++|+.++++|.+|..|+++++ +++||++||...
T Consensus 456 R~~~~~--~~l~~g~i~v~GG~~~~~~~~-~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~ 532 (656)
T 1k3i_A 456 RTFHTS--VVLPDGSTFITGGQRRGIPFE-DSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLC 532 (656)
T ss_dssp CBSCEE--EECTTSCEEEECCBSBCCTTC-CCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCC
T ss_pred cccCCe--EECCCCCEEEECCcccCcCcC-CCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCC
Confidence 987753 555 99999999976432110 011567999999999999999999999999998888 999999999643
No 17
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=6.4e-35 Score=304.62 Aligned_cols=282 Identities=11% Similarity=0.080 Sum_probs=211.1
Q ss_pred ceEEecCCCCCccccce-eeeEEEccCCcchhhhhccceeeccCCCCcEEEcC-C-----CCCCCCceeEEEE--CCEEE
Q 013909 62 GVVVIPHVNATKIDRQR-ESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMP-S-----APVPRLDGAAIQI--KNLFY 132 (434)
Q Consensus 62 ~W~~~~~~~~~r~~~~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~-~-----~p~~R~~~~~~~~--~~~iy 132 (434)
+|...+..+..|.++.. .+-.++.-++... ..+ .+++.||+.+++|+.++ + +|.+|.+|+++++ +++||
T Consensus 378 ~~~~~~~~p~rr~g~~~~~~~~iyv~GG~~~-~~~-~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~ly 455 (695)
T 2zwa_A 378 QLLECECPINRKFGDVDVAGNDVFYMGGSNP-YRV-NEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLL 455 (695)
T ss_dssp EEEECCCTTCCBSCEEEECSSCEEEECCBSS-SBC-CCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEE
T ss_pred eEeccCCCCCCceeEEEEECCEEEEECCCCC-CCc-CcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEE
Confidence 45555555555544322 1111222222222 334 48999999999999988 5 8999999999999 99999
Q ss_pred EEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCCCceEe
Q 013909 133 VFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDS 211 (434)
Q Consensus 133 v~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~ 211 (434)
|+||.......++++|+||+.+++|+.++++|. +|..|+++++ +++|||+||.+... ++++||+.+++|+.
T Consensus 456 v~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~--~R~~h~~~~~~~~~iyv~GG~~~~~------~v~~yd~~t~~W~~ 527 (695)
T 2zwa_A 456 LIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSH--TRFRHSACSLPDGNVLILGGVTEGP------AMLLYNVTEEIFKD 527 (695)
T ss_dssp EECCBSSTTCBCCCCEEEETTTTEEEECCCCSB--CCBSCEEEECTTSCEEEECCBCSSC------SEEEEETTTTEEEE
T ss_pred EEcCCCCCCCccccEEEEeCCCCcEEECCCCCC--CcccceEEEEcCCEEEEECCCCCCC------CEEEEECCCCceEE
Confidence 999998766577889999999999999999987 7999999996 99999999986542 89999999999999
Q ss_pred cCC---CCCCcccceEEEEC---CEEEEEcCCCCC--CCCCCcceEEEEeeccccccCc------eEEccCC-CCCCCce
Q 013909 212 IPP---LPSPRYSPATQLWR---GRLHVMGGSKEN--RHTPGLEHWSIAVKDGKALEKA------WRTEIPI-PRGGPHR 276 (434)
Q Consensus 212 ~~~---~p~~r~~~~~~~~~---~~iyv~GG~~~~--~~~~~~~~~~~~~~~~~~~~~~------W~~~~~~-p~~~~~~ 276 (434)
+++ +|.+|..|++++++ ++|||+||.... ...+.+++|+ +.+++ |+.+.++ +.++.++
T Consensus 528 ~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd-------~~~~~w~~~~~W~~~~~~p~~~R~~~ 600 (695)
T 2zwa_A 528 VTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFK-------YDAENATEPITVIKKLQHPLFQRYGS 600 (695)
T ss_dssp CCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEE-------ECTTCSSCCEEEEEEEECGGGCCBSC
T ss_pred ccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEE-------ccCCccccceEEEEcCCCCCCCcccc
Confidence 986 89999999988877 899999998543 3456666666 66888 8888665 4667777
Q ss_pred eEEEEC-CEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCC--------CCCccceeEEEE
Q 013909 277 ACFVFN-DRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPK--------PNSHIECAWVIV 346 (434)
Q Consensus 277 ~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~--------~r~~~~~~~~~~ 346 (434)
++++++ ++|||+||.+.... ....+++++|| .+++|+.++ +|. .+.+| +++.+
T Consensus 601 ~~~~~~~~~iyv~GG~~~~~~--------------~~~~~~v~~yd~~t~~W~~~~-~p~~~~~~~~p~~~gh--~~~~~ 663 (695)
T 2zwa_A 601 QIKYITPRKLLIVGGTSPSGL--------------FDRTNSIISLDPLSETLTSIP-ISRRIWEDHSLMLAGF--SLVST 663 (695)
T ss_dssp EEEEEETTEEEEECCBCSSCC--------------CCTTTSEEEEETTTTEEEECC-CCHHHHHHSCCCCSSC--EEECC
T ss_pred eEEEeCCCEEEEECCccCCCC--------------CCCCCeEEEEECCCCeEEEee-ccccccCCCCccceee--eEEEe
Confidence 889998 99999999864421 01367899999 888999753 221 23334 44665
Q ss_pred CC-EEEEEcCcCCCCCCccceeeeccEEEEECCCC
Q 013909 347 NN-SIIITGGTTEKHPMTKRMILVGEVFQFHLDSL 380 (434)
Q Consensus 347 ~~-~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~ 380 (434)
++ +|||+||......+.. +.|++|.+|+.++
T Consensus 664 ~~g~i~v~GGg~~cfsfGt---~~n~i~~ldl~~~ 695 (695)
T 2zwa_A 664 SMGTIHIIGGGATCYGFGS---VTNVGLKLIAIAK 695 (695)
T ss_dssp ---CEEEECCEEECTTSCE---EECCCEEEEECCC
T ss_pred CCCEEEEEeCCccCcCccc---cccceEEEEEEcC
Confidence 55 9999999654322111 6778999987653
No 18
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=100.00 E-value=4.6e-35 Score=305.10 Aligned_cols=298 Identities=14% Similarity=0.135 Sum_probs=223.5
Q ss_pred ceeeccCCCCcEEEcCCCCCCCCceeEEEE--CCEEEEEeccCCCC-----CceeeEEEEECCCCceEecCCCCCCCCce
Q 013909 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI--KNLFYVFAGYGSLD-----YVHSHVDVYNFTDNKWVDRFDMPKDMAHS 170 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~-----~~~~~v~~yd~~t~~W~~~~~~~~~~~r~ 170 (434)
.+..||+.+++|+.++++|. ..++++++ +++||++||..... ...+++++||+.+++|+.+++++.+..+.
T Consensus 167 ~~~~~dp~~~~W~~~~~~P~--~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~ 244 (656)
T 1k3i_A 167 SYTAPQPGLGRWGPTIDLPI--VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMF 244 (656)
T ss_dssp CCCCCCTTSCEEEEEEECSS--CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCS
T ss_pred ccccCCCCCCeeeeeccCCC--CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCc
Confidence 46788999999999987765 55555666 99999999985432 23457999999999999998887744344
Q ss_pred eeEEEE-eCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEE-CCEEEEEcC-CCCCCCCCCcc
Q 013909 171 HLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW-RGRLHVMGG-SKENRHTPGLE 247 (434)
Q Consensus 171 ~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG-~~~~~~~~~~~ 247 (434)
++++++ .+++||++||.+. .++++||+.+++|+++++||.+|..|+++++ +++|||+|| .++....++++
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~-------~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e 317 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDA-------KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGE 317 (656)
T ss_dssp SCEEEECTTSCEEEECSSST-------TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEE
T ss_pred cccccCCCCCCEEEeCCCCC-------CceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccce
Confidence 444444 6899999999754 2799999999999999999999999999999 999999999 45555667778
Q ss_pred eEEEEeeccccccCceEEc-----cCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-
Q 013909 248 HWSIAVKDGKALEKAWRTE-----IPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD- 321 (434)
Q Consensus 248 ~~~~~~~~~~~~~~~W~~~-----~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd- 321 (434)
+|| +.+++|+.+ .|++..+.. +++..++++|++||.++... .....++++.||
T Consensus 318 ~yd-------~~t~~W~~~~~~~~~p~~~~~~~-~~~~~~~~iyv~Gg~~g~~~-------------~~~~~~~v~~yd~ 376 (656)
T 1k3i_A 318 VYS-------PSSKTWTSLPNAKVNPMLTADKQ-GLYRSDNHAWLFGWKKGSVF-------------QAGPSTAMNWYYT 376 (656)
T ss_dssp EEE-------TTTTEEEEETTSCSGGGCCCCTT-GGGTTTCSCCEEECGGGCEE-------------ECCSSSEEEEEEC
T ss_pred EeC-------CCCCcceeCCCcccccccccccc-ceeecCCceEEEECCCCcEE-------------EecCccceeeeec
Confidence 877 889999996 567776654 66678999999999765310 001256799999
Q ss_pred CCCCeEEcC-CCCC------CCCccceeEE--EECCEEEEEcCcCCCCCCccceeeec---cEEEEECCCCceEEec--c
Q 013909 322 DEMKWKVLP-PMPK------PNSHIECAWV--IVNNSIIITGGTTEKHPMTKRMILVG---EVFQFHLDSLTWSVIG--K 387 (434)
Q Consensus 322 ~~~~W~~~~-~~p~------~r~~~~~~~~--~~~~~i~v~GG~~~~~~~~~~~~~~~---~v~~yd~~~~~W~~~~--~ 387 (434)
.+++|.... ..+. ++. .+++++ ..+++||++||.+...... .++ ++++||+++++|+.+. .
T Consensus 377 ~~~~w~~~~~~~~~~~~~~~~~~-~~~av~~~~~~~~i~v~GG~~~~~~~~----~~~~~~~v~~yd~~~~~W~~~~~~~ 451 (656)
T 1k3i_A 377 SGSGDVKSAGKRQSNRGVAPDAM-CGNAVMYDAVKGKILTFGGSPDYQDSD----ATTNAHIITLGEPGTSPNTVFASNG 451 (656)
T ss_dssp STTCEEEEEEECEETTEECCCCB-TCEEEEEETTTTEEEEECCBSSSSSSB----CCCCEEEEECCSTTSCCEEEECTTC
T ss_pred CCcceeecCCccccccccCCCCC-CCceEeccCCCCeEEEEeCCCCCCCCC----cCCcceEEEcCCCCCCCeeEEccCC
Confidence 777876532 2221 222 222222 2589999999975422110 233 7899999999999986 8
Q ss_pred CCCceeeeeeEEE-CCEEEEEccccCC-------CCCCCchhhhhhccccc
Q 013909 388 LPYRIKTTLTGFW-DGWLYFTSGQRDR-------GPENPQPRKVIGEMWRT 430 (434)
Q Consensus 388 lp~~r~~~~~~~~-~~~l~v~GG~~~~-------~~~~~~~~~~~~~~w~~ 430 (434)
||.+|..++++.+ +++|||+||.... ...+..++....+.|+.
T Consensus 452 mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~ 502 (656)
T 1k3i_A 452 LYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK 502 (656)
T ss_dssp CSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE
T ss_pred CCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceee
Confidence 9999999998887 9999999997642 13556667777788864
No 19
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.19 E-value=0.0032 Score=59.75 Aligned_cols=237 Identities=14% Similarity=0.200 Sum_probs=128.8
Q ss_pred cceeeccCCCC--cEEEcCCCCCCCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCc--eEecCCCCCCCCceee
Q 013909 97 ATFADLPAPDL--EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSHL 172 (434)
Q Consensus 97 ~~~~~~~~~~~--~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~r~~~ 172 (434)
..++.+|..++ .|+.-..- ....+.+..++.||+.... ..++.||+.+.+ |+.-...+....+...
T Consensus 113 g~l~a~d~~tG~~~W~~~~~~---~~~~~p~~~~~~v~v~~~~-------g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~ 182 (376)
T 3q7m_A 113 AQVYALNTSDGTVAWQTKVAG---EALSRPVVSDGLVLIHTSN-------GQLQALNEADGAVKWTVNLDMPSLSLRGES 182 (376)
T ss_dssp SEEEEEETTTCCEEEEEECSS---CCCSCCEEETTEEEEECTT-------SEEEEEETTTCCEEEEEECCC-----CCCC
T ss_pred CEEEEEECCCCCEEEEEeCCC---ceEcCCEEECCEEEEEcCC-------CeEEEEECCCCcEEEEEeCCCCceeecCCC
Confidence 46888888766 57653221 1122334558888875431 259999998876 8764332211012223
Q ss_pred EEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCc--eEecCCCCCCc--------ccceEEEECCEEEEEcCCCCCCC
Q 013909 173 GVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK--WDSIPPLPSPR--------YSPATQLWRGRLHVMGGSKENRH 242 (434)
Q Consensus 173 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~r--------~~~~~~~~~~~iyv~GG~~~~~~ 242 (434)
+.++.++.+|+ |.. ...+..||+.+.+ |+.-...|... .....+..++.+|+.+..
T Consensus 183 ~~~~~~~~v~~-g~~--------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~----- 248 (376)
T 3q7m_A 183 APTTAFGAAVV-GGD--------NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYN----- 248 (376)
T ss_dssp CCEEETTEEEE-CCT--------TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTT-----
T ss_pred CcEEECCEEEE-EcC--------CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecC-----
Confidence 44556888777 321 2468899988764 76654332211 223344668888887521
Q ss_pred CCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-
Q 013909 243 TPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD- 321 (434)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd- 321 (434)
..+..++. ......|+...+. ....+..++.||+.... + .++++|
T Consensus 249 -g~l~~~d~-----~tG~~~w~~~~~~-----~~~~~~~~~~l~~~~~~-g----------------------~l~~~d~ 294 (376)
T 3q7m_A 249 -GNLTALDL-----RSGQIMWKRELGS-----VNDFIVDGNRIYLVDQN-D----------------------RVMALTI 294 (376)
T ss_dssp -SCEEEEET-----TTCCEEEEECCCC-----EEEEEEETTEEEEEETT-C----------------------CEEEEET
T ss_pred -cEEEEEEC-----CCCcEEeeccCCC-----CCCceEECCEEEEEcCC-C----------------------eEEEEEC
Confidence 12333431 1223357654221 22456678999987542 1 388998
Q ss_pred CCC--CeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccCCCceeeeeeEE
Q 013909 322 DEM--KWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKLPYRIKTTLTGF 399 (434)
Q Consensus 322 ~~~--~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~ 399 (434)
.+. .|+.-. ++.. .. .+.++.++.||+... + ..++.||+++.+-.-...++........+.
T Consensus 295 ~tG~~~w~~~~-~~~~-~~--~~~~~~~~~l~v~~~-~------------g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~ 357 (376)
T 3q7m_A 295 DGGVTLWTQSD-LLHR-LL--TSPVLYNGNLVVGDS-E------------GYLHWINVEDGRFVAQQKVDSSGFQTEPVA 357 (376)
T ss_dssp TTCCEEEEECT-TTTS-CC--CCCEEETTEEEEECT-T------------SEEEEEETTTCCEEEEEECCTTCBCSCCEE
T ss_pred CCCcEEEeecc-cCCC-cc--cCCEEECCEEEEEeC-C------------CeEEEEECCCCcEEEEEecCCCcceeCCEE
Confidence 443 687632 2111 11 133667888887542 1 268999998887322222322233344556
Q ss_pred ECCEEEEEc
Q 013909 400 WDGWLYFTS 408 (434)
Q Consensus 400 ~~~~l~v~G 408 (434)
.++.||+..
T Consensus 358 ~~~~l~v~~ 366 (376)
T 3q7m_A 358 ADGKLLIQA 366 (376)
T ss_dssp ETTEEEEEB
T ss_pred ECCEEEEEe
Confidence 688888864
No 20
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.10 E-value=0.00056 Score=64.06 Aligned_cols=253 Identities=8% Similarity=0.013 Sum_probs=136.6
Q ss_pred ccceeeccCCCCcEEEcC-----CCCCCCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCce-EecCCCCCCCCc
Q 013909 96 SATFADLPAPDLEWEQMP-----SAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKW-VDRFDMPKDMAH 169 (434)
Q Consensus 96 ~~~~~~~~~~~~~W~~~~-----~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~~~~~~r 169 (434)
+..+..+|+.++++..-- ..+.......++..++++|+.... .+.+.++|+.+.+- .+++....
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~------~~~v~viD~~t~~~~~~i~~~~~---- 85 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNN------SHVIFAIDINTFKEVGRITGFTS---- 85 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGG------GTEEEEEETTTCCEEEEEECCSS----
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcC------CCEEEEEECcccEEEEEcCCCCC----
Confidence 347888888887765421 112233345566779999998753 24599999998875 33433222
Q ss_pred eeeEEEE-eCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCC----CcccceEEEECCEEEEEcCCCCCCCCC
Q 013909 170 SHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPS----PRYSPATQLWRGRLHVMGGSKENRHTP 244 (434)
Q Consensus 170 ~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~----~r~~~~~~~~~~~iyv~GG~~~~~~~~ 244 (434)
.+.+++ .++++|+.... ...+.++|+.+.+-...-+.+. ...-..++..++++||..-. ...
T Consensus 86 -p~~i~~~~~g~lyv~~~~--------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~----~~~ 152 (328)
T 3dsm_A 86 -PRYIHFLSDEKAYVTQIW--------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWS----YQN 152 (328)
T ss_dssp -EEEEEEEETTEEEEEEBS--------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECT----TCC
T ss_pred -CcEEEEeCCCeEEEEECC--------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCC----CCC
Confidence 234444 67899998642 3679999999987542211111 00223444578999998420 123
Q ss_pred CcceEEEEeeccccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CC
Q 013909 245 GLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DE 323 (434)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~ 323 (434)
.+.+++ +.+.+.....+....-. ..+..-++++|+..-...... ......+.++++| .+
T Consensus 153 ~v~viD-------~~t~~~~~~i~~g~~p~-~i~~~~dG~l~v~~~~~~~~~------------~~~~~~~~v~~id~~t 212 (328)
T 3dsm_A 153 RILKID-------TETDKVVDELTIGIQPT-SLVMDKYNKMWTITDGGYEGS------------PYGYEAPSLYRIDAET 212 (328)
T ss_dssp EEEEEE-------TTTTEEEEEEECSSCBC-CCEECTTSEEEEEBCCBCTTC------------SSCBCCCEEEEEETTT
T ss_pred EEEEEE-------CCCCeEEEEEEcCCCcc-ceEEcCCCCEEEEECCCccCC------------ccccCCceEEEEECCC
Confidence 444554 55555443222211111 122234789888764321100 0000024699999 55
Q ss_pred CCeEEcCCCCCCCCccceeEEEE--CCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccCCC-ceeeeeeEE-
Q 013909 324 MKWKVLPPMPKPNSHIECAWVIV--NNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKLPY-RIKTTLTGF- 399 (434)
Q Consensus 324 ~~W~~~~~~p~~r~~~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~lp~-~r~~~~~~~- 399 (434)
.+....-.++....- ..+++. ++.+|+..+ .++++|+++.+......++. .....++++
T Consensus 213 ~~v~~~~~~~~g~~p--~~la~~~d~~~lyv~~~---------------~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vd 275 (328)
T 3dsm_A 213 FTVEKQFKFKLGDWP--SEVQLNGTRDTLYWINN---------------DIWRMPVEADRVPVRPFLEFRDTKYYGLTVN 275 (328)
T ss_dssp TEEEEEEECCTTCCC--EEEEECTTSCEEEEESS---------------SEEEEETTCSSCCSSCSBCCCSSCEEEEEEC
T ss_pred CeEEEEEecCCCCCc--eeEEEecCCCEEEEEcc---------------EEEEEECCCCceeeeeeecCCCCceEEEEEc
Confidence 554432223322111 133444 567888643 48899999887632222222 122334444
Q ss_pred -ECCEEEEEc
Q 013909 400 -WDGWLYFTS 408 (434)
Q Consensus 400 -~~~~l~v~G 408 (434)
.+++||+..
T Consensus 276 p~~g~lyva~ 285 (328)
T 3dsm_A 276 PNNGEVYVAD 285 (328)
T ss_dssp TTTCCEEEEE
T ss_pred CCCCeEEEEc
Confidence 367899886
No 21
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.85 E-value=0.021 Score=53.97 Aligned_cols=234 Identities=18% Similarity=0.231 Sum_probs=127.3
Q ss_pred ceeeccCCCC--cEEEcCCCC-------CCCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCc--eEecCCCCCC
Q 013909 98 TFADLPAPDL--EWEQMPSAP-------VPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKD 166 (434)
Q Consensus 98 ~~~~~~~~~~--~W~~~~~~p-------~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~ 166 (434)
.+..+|..++ .|+.-.... ......+.+..++.||+.... ..++++|+.+.+ |+.-.+-.
T Consensus 64 ~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~-------g~l~a~d~~tG~~~W~~~~~~~-- 134 (376)
T 3q7m_A 64 LVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEK-------AQVYALNTSDGTVAWQTKVAGE-- 134 (376)
T ss_dssp EEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETT-------SEEEEEETTTCCEEEEEECSSC--
T ss_pred eEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCC-------CEEEEEECCCCCEEEEEeCCCc--
Confidence 6788887665 676543211 122234445668899986432 359999998875 76532211
Q ss_pred CCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCc--eEecCCCCC--CcccceEEEECCEEEEEcCCCCCCC
Q 013909 167 MAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK--WDSIPPLPS--PRYSPATQLWRGRLHVMGGSKENRH 242 (434)
Q Consensus 167 ~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~ 242 (434)
...+.++.++.+|+... ...++.||+.+.+ |+.-.+.+. .+...+.+..++.+|+.. .+
T Consensus 135 ---~~~~p~~~~~~v~v~~~---------~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~-~~---- 197 (376)
T 3q7m_A 135 ---ALSRPVVSDGLVLIHTS---------NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGG-DN---- 197 (376)
T ss_dssp ---CCSCCEEETTEEEEECT---------TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECC-TT----
T ss_pred ---eEcCCEEECCEEEEEcC---------CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEc-CC----
Confidence 11223456888887532 2478999998775 876543221 122334455678777732 21
Q ss_pred CCCcceEEEEeeccccccCceEEccCCCCCC--------CceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceee
Q 013909 243 TPGLEHWSIAVKDGKALEKAWRTEIPIPRGG--------PHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVY 314 (434)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~ 314 (434)
..+..++. ......|+.....|... .....+..++.+|+.+. ++
T Consensus 198 -g~l~~~d~-----~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~-~g--------------------- 249 (376)
T 3q7m_A 198 -GRVSAVLM-----EQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY-NG--------------------- 249 (376)
T ss_dssp -TEEEEEET-----TTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT-TS---------------------
T ss_pred -CEEEEEEC-----CCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec-Cc---------------------
Confidence 12233331 12344577644333211 11244566888888652 22
Q ss_pred CcEEEeC-CCC--CeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCc--eEEeccCC
Q 013909 315 GDVYMLD-DEM--KWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLT--WSVIGKLP 389 (434)
Q Consensus 315 ~~v~~yd-~~~--~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~~~lp 389 (434)
.++++| .+. .|+.-.. . ..+.++.++.||+.... ..++.||+++.+ |+.- .++
T Consensus 250 -~l~~~d~~tG~~~w~~~~~--~-----~~~~~~~~~~l~~~~~~-------------g~l~~~d~~tG~~~w~~~-~~~ 307 (376)
T 3q7m_A 250 -NLTALDLRSGQIMWKRELG--S-----VNDFIVDGNRIYLVDQN-------------DRVMALTIDGGVTLWTQS-DLL 307 (376)
T ss_dssp -CEEEEETTTCCEEEEECCC--C-----EEEEEEETTEEEEEETT-------------CCEEEEETTTCCEEEEEC-TTT
T ss_pred -EEEEEECCCCcEEeeccCC--C-----CCCceEECCEEEEEcCC-------------CeEEEEECCCCcEEEeec-ccC
Confidence 388898 443 6876421 1 12346778899987531 258999998876 7653 121
Q ss_pred CceeeeeeEEECCEEEEEc
Q 013909 390 YRIKTTLTGFWDGWLYFTS 408 (434)
Q Consensus 390 ~~r~~~~~~~~~~~l~v~G 408 (434)
.+.....+..++.||+..
T Consensus 308 -~~~~~~~~~~~~~l~v~~ 325 (376)
T 3q7m_A 308 -HRLLTSPVLYNGNLVVGD 325 (376)
T ss_dssp -TSCCCCCEEETTEEEEEC
T ss_pred -CCcccCCEEECCEEEEEe
Confidence 122233444566766653
No 22
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.80 E-value=0.0041 Score=55.14 Aligned_cols=165 Identities=16% Similarity=0.174 Sum_probs=103.8
Q ss_pred CCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCC
Q 013909 164 PKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHT 243 (434)
Q Consensus 164 ~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 243 (434)
|.+..-.-+++...++.||+-.|..+ .+.+.++|+++.+-...-++|..-.+..++..+++||+....+
T Consensus 16 phd~~~ftqGL~~~~~~LyestG~~g------~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~----- 84 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLRGHLYESTGETG------RSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRN----- 84 (243)
T ss_dssp ECCTTCCEEEEEEETTEEEEEECCTT------SCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS-----
T ss_pred CCCCccccccEEEECCEEEEECCCCC------CceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeC-----
Confidence 33334455678888999999988654 3678999999998766667776667777888999999996543
Q ss_pred CCcceEEEEeeccccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-C
Q 013909 244 PGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-D 322 (434)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~ 322 (434)
+...+|| +.+.+ .+..+|.+..+.+++.-++++|+.-|. +.++.+| .
T Consensus 85 ~~v~v~D-------~~tl~--~~~ti~~~~~Gwglt~dg~~L~vSdgs-----------------------~~l~~iDp~ 132 (243)
T 3mbr_X 85 HEGFVYD-------LATLT--PRARFRYPGEGWALTSDDSHLYMSDGT-----------------------AVIRKLDPD 132 (243)
T ss_dssp SEEEEEE-------TTTTE--EEEEEECSSCCCEEEECSSCEEEECSS-----------------------SEEEEECTT
T ss_pred CEEEEEE-------CCcCc--EEEEEeCCCCceEEeeCCCEEEEECCC-----------------------CeEEEEeCC
Confidence 3444555 33333 333333333444666667888988762 2489999 5
Q ss_pred CCCe-EEc--CCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEE
Q 013909 323 EMKW-KVL--PPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSV 384 (434)
Q Consensus 323 ~~~W-~~~--~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 384 (434)
+.+- ..+ ..-+.|..... .+...+++||+---. .+++.+.|+++.+=..
T Consensus 133 t~~~~~~I~V~~~g~~~~~lN-eLe~~~G~lyanvw~------------s~~I~vIDp~tG~V~~ 184 (243)
T 3mbr_X 133 TLQQVGSIKVTAGGRPLDNLN-ELEWVNGELLANVWL------------TSRIARIDPASGKVVA 184 (243)
T ss_dssp TCCEEEEEECEETTEECCCEE-EEEEETTEEEEEETT------------TTEEEEECTTTCBEEE
T ss_pred CCeEEEEEEEccCCcccccce-eeEEeCCEEEEEECC------------CCeEEEEECCCCCEEE
Confidence 5432 222 12222222211 234568998864321 2479999999987433
No 23
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.69 E-value=0.0027 Score=56.30 Aligned_cols=196 Identities=13% Similarity=0.079 Sum_probs=115.3
Q ss_pred EEcCCCCCCCCce--eEEEECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEecc
Q 013909 110 EQMPSAPVPRLDG--AAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQ 187 (434)
Q Consensus 110 ~~~~~~p~~R~~~--~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~ 187 (434)
+-+...|.+...+ .+...++.+|+-.|..+.. .+.++|+.+++=..--+++. ...+.+++..+++||+....
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~~~LyestG~~g~S----~v~~vD~~tgkv~~~~~l~~--~~fgeGi~~~~~~ly~ltw~ 83 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLRGHLYESTGETGRS----SVRKVDLETGRILQRAEVPP--PYFGAGIVAWRDRLIQLTWR 83 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEETTEEEEEECCTTSC----EEEEEETTTCCEEEEEECCT--TCCEEEEEEETTEEEEEESS
T ss_pred EEEEEcCCCCccccccEEEECCEEEEECCCCCCc----eEEEEECCCCCEEEEEeCCC--CcceeEEEEeCCEEEEEEee
Confidence 3334445444443 6677799999999976543 48999999998655445554 45667788899999998542
Q ss_pred CCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEcc
Q 013909 188 YGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEI 267 (434)
Q Consensus 188 ~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 267 (434)
.+.+++||+.+.+-.. ..+.+..+..++.-++++|+.-|. ..+..+| |.+.+-..-.
T Consensus 84 --------~~~v~v~D~~tl~~~~--ti~~~~~Gwglt~dg~~L~vSdgs------~~l~~iD-------p~t~~~~~~I 140 (243)
T 3mbr_X 84 --------NHEGFVYDLATLTPRA--RFRYPGEGWALTSDDSHLYMSDGT------AVIRKLD-------PDTLQQVGSI 140 (243)
T ss_dssp --------SSEEEEEETTTTEEEE--EEECSSCCCEEEECSSCEEEECSS------SEEEEEC-------TTTCCEEEEE
T ss_pred --------CCEEEEEECCcCcEEE--EEeCCCCceEEeeCCCEEEEECCC------CeEEEEe-------CCCCeEEEEE
Confidence 3689999998865432 223333556677777889988652 1222332 6665533311
Q ss_pred C---CCCCCCc-eeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCC---CeEEcCCCCC-----
Q 013909 268 P---IPRGGPH-RACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEM---KWKVLPPMPK----- 334 (434)
Q Consensus 268 ~---~p~~~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~---~W~~~~~~p~----- 334 (434)
+ -+.+... -.+...+++||+---. .++|.+.| .+. .|-.++.+..
T Consensus 141 ~V~~~g~~~~~lNeLe~~~G~lyanvw~----------------------s~~I~vIDp~tG~V~~~idl~~l~~~~~~~ 198 (243)
T 3mbr_X 141 KVTAGGRPLDNLNELEWVNGELLANVWL----------------------TSRIARIDPASGKVVAWIDLQALVPDADAL 198 (243)
T ss_dssp ECEETTEECCCEEEEEEETTEEEEEETT----------------------TTEEEEECTTTCBEEEEEECGGGSTTTTSC
T ss_pred EEccCCcccccceeeEEeCCEEEEEECC----------------------CCeEEEEECCCCCEEEEEECCcCccccccc
Confidence 1 1111111 1334568999965422 24689999 444 4555554321
Q ss_pred --CCCccceeEEEE--CCEEEEEcCc
Q 013909 335 --PNSHIECAWVIV--NNSIIITGGT 356 (434)
Q Consensus 335 --~r~~~~~~~~~~--~~~i~v~GG~ 356 (434)
+....--+++.. ++++||-|-.
T Consensus 199 ~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 199 TDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp CCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred cCCcCCceEEEEEcCCCCEEEEECCC
Confidence 111111223443 5688888764
No 24
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.59 E-value=0.022 Score=53.03 Aligned_cols=215 Identities=12% Similarity=0.035 Sum_probs=116.5
Q ss_pred eeeEEEEECCCCceEecCC---CCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCce-EecCCCCCCc
Q 013909 144 HSHVDVYNFTDNKWVDRFD---MPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKW-DSIPPLPSPR 219 (434)
Q Consensus 144 ~~~v~~yd~~t~~W~~~~~---~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W-~~~~~~p~~r 219 (434)
...+..||++++++..--. -+.+.......+++.++++|+.... .+.+.++|+.+.+- ..++....|+
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~--------~~~v~viD~~t~~~~~~i~~~~~p~ 87 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNN--------SHVIFAIDINTFKEVGRITGFTSPR 87 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGG--------GTEEEEEETTTCCEEEEEECCSSEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcC--------CCEEEEEECcccEEEEEcCCCCCCc
Confidence 3569999999998764210 0112234456677789999998642 36799999998876 3343332222
Q ss_pred ccceEEE-ECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCC----CCceeEEEECCEEEEEcCCCCC
Q 013909 220 YSPATQL-WRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRG----GPHRACFVFNDRLFVVGGQEGD 294 (434)
Q Consensus 220 ~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~----~~~~~~~~~~~~iyv~GG~~~~ 294 (434)
.++. -++++||.... ...+.+++ +.+.+-....+.+.. .....++..++++|+..-..
T Consensus 88 ---~i~~~~~g~lyv~~~~-----~~~v~~iD-------~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~-- 150 (328)
T 3dsm_A 88 ---YIHFLSDEKAYVTQIW-----DYRIFIIN-------PKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSY-- 150 (328)
T ss_dssp ---EEEEEETTEEEEEEBS-----CSEEEEEE-------TTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTT--
T ss_pred ---EEEEeCCCeEEEEECC-----CCeEEEEE-------CCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCC--
Confidence 3333 68899998642 23444454 555543322222220 01224445799999985311
Q ss_pred CCCCCCCCccccccccceeeCcEEEeC-CCCCeEE-cCCCCCCCCccceeEEEECCEEEEEcCcCCCCC-Cccceeeecc
Q 013909 295 FMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKV-LPPMPKPNSHIECAWVIVNNSIIITGGTTEKHP-MTKRMILVGE 371 (434)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~-~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~-~~~~~~~~~~ 371 (434)
.+.+.++| .+.+... ++....|. +. ++..++++|+..-...... ... -.+.
T Consensus 151 -------------------~~~v~viD~~t~~~~~~i~~g~~p~---~i-~~~~dG~l~v~~~~~~~~~~~~~---~~~~ 204 (328)
T 3dsm_A 151 -------------------QNRILKIDTETDKVVDELTIGIQPT---SL-VMDKYNKMWTITDGGYEGSPYGY---EAPS 204 (328)
T ss_dssp -------------------CCEEEEEETTTTEEEEEEECSSCBC---CC-EECTTSEEEEEBCCBCTTCSSCB---CCCE
T ss_pred -------------------CCEEEEEECCCCeEEEEEEcCCCcc---ce-EEcCCCCEEEEECCCccCCcccc---CCce
Confidence 12488999 5554332 22212221 22 2345689888764321110 000 0247
Q ss_pred EEEEECCCCceEEeccCCCceeeeeeEEE--CCEEEEEcc
Q 013909 372 VFQFHLDSLTWSVIGKLPYRIKTTLTGFW--DGWLYFTSG 409 (434)
Q Consensus 372 v~~yd~~~~~W~~~~~lp~~r~~~~~~~~--~~~l~v~GG 409 (434)
++++|+++.+....-.+|.......++.. ++.||+..+
T Consensus 205 v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~ 244 (328)
T 3dsm_A 205 LYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN 244 (328)
T ss_dssp EEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS
T ss_pred EEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc
Confidence 99999999887643344432222333333 456666543
No 25
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.48 E-value=0.011 Score=57.45 Aligned_cols=216 Identities=13% Similarity=0.075 Sum_probs=106.4
Q ss_pred cceeeccCCCCcEEEcCCCCCCCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEE
Q 013909 97 ATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS 176 (434)
Q Consensus 97 ~~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~ 176 (434)
..+..+|..+++-.. .+........+...++..++.|+.+ ..+.+||..+.+-...-.... ..-.++..
T Consensus 179 g~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~~---~~v~~~~~ 247 (445)
T 2ovr_B 179 RTLKVWNAETGECIH--TLYGHTSTVRCMHLHEKRVVSGSRD------ATLRVWDIETGQCLHVLMGHV---AAVRCVQY 247 (445)
T ss_dssp SCEEEEETTTTEEEE--EECCCSSCEEEEEEETTEEEEEETT------SEEEEEESSSCCEEEEEECCS---SCEEEEEE
T ss_pred CeEEEEECCcCcEEE--EECCCCCcEEEEEecCCEEEEEeCC------CEEEEEECCCCcEEEEEcCCc---ccEEEEEE
Confidence 356666666553221 1222222223333455556666654 248889988765332111111 11122333
Q ss_pred eCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeecc
Q 013909 177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDG 256 (434)
Q Consensus 177 ~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~ 256 (434)
++..++.|+.+ ..+..||+.+.+-... +.........+..++..++.|+.++ .+.+|++
T Consensus 248 -~~~~l~~~~~d--------g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~~~d~-----~i~i~d~----- 306 (445)
T 2ovr_B 248 -DGRRVVSGAYD--------FMVKVWDPETETCLHT--LQGHTNRVYSLQFDGIHVVSGSLDT-----SIRVWDV----- 306 (445)
T ss_dssp -CSSCEEEEETT--------SCEEEEEGGGTEEEEE--ECCCSSCEEEEEECSSEEEEEETTS-----CEEEEET-----
T ss_pred -CCCEEEEEcCC--------CEEEEEECCCCcEeEE--ecCCCCceEEEEECCCEEEEEeCCC-----eEEEEEC-----
Confidence 66667777643 3577888876643221 1111122233344777777776543 4566663
Q ss_pred ccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCC-eEEcCCCCC
Q 013909 257 KALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMK-WKVLPPMPK 334 (434)
Q Consensus 257 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~-W~~~~~~p~ 334 (434)
.+.+ .+..+........+...++..++.|+.++. +..|| .+.+ -..+.....
T Consensus 307 --~~~~--~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~----------------------i~vwd~~~~~~~~~~~~~~~ 360 (445)
T 2ovr_B 307 --ETGN--CIHTLTGHQSLTSGMELKDNILVSGNADST----------------------VKIWDIKTGQCLQTLQGPNK 360 (445)
T ss_dssp --TTCC--EEEEECCCCSCEEEEEEETTEEEEEETTSC----------------------EEEEETTTCCEEEEECSTTS
T ss_pred --CCCC--EEEEEcCCcccEEEEEEeCCEEEEEeCCCe----------------------EEEEECCCCcEEEEEccCCC
Confidence 2222 111111111122334456667777876653 77777 4432 222221111
Q ss_pred CCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEE
Q 013909 335 PNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSV 384 (434)
Q Consensus 335 ~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 384 (434)
.... ...+..++.+++.|+.++ .+.+||+.+.+...
T Consensus 361 ~~~~--v~~~~~~~~~l~s~~~dg------------~v~iwd~~~~~~~~ 396 (445)
T 2ovr_B 361 HQSA--VTCLQFNKNFVITSSDDG------------TVKLWDLKTGEFIR 396 (445)
T ss_dssp CSSC--EEEEEECSSEEEEEETTS------------EEEEEETTTCCEEE
T ss_pred CCCC--EEEEEECCCEEEEEeCCC------------eEEEEECCCCceee
Confidence 1111 222445677788887552 68899999887644
No 26
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.38 E-value=0.0084 Score=53.67 Aligned_cols=160 Identities=12% Similarity=0.084 Sum_probs=97.2
Q ss_pred ceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcce
Q 013909 169 HSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEH 248 (434)
Q Consensus 169 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 248 (434)
-.-.++...++.||+-.|..+ .+.+.++|+++.+-...-+++..-....++..+++||+....+ +.+.+
T Consensus 43 ~ftqGL~~~~~~LyestG~~g------~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~-----~~v~v 111 (262)
T 3nol_A 43 AFTEGFFYRNGYFYESTGLNG------RSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKN-----GLGFV 111 (262)
T ss_dssp CEEEEEEEETTEEEEEEEETT------EEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS-----SEEEE
T ss_pred cccceEEEECCEEEEECCCCC------CceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeC-----CEEEE
Confidence 344566777999999988544 2678999999998655555665555566788899999996543 34445
Q ss_pred EEEEeeccccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCe-
Q 013909 249 WSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKW- 326 (434)
Q Consensus 249 ~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W- 326 (434)
|| +.+.+- +..++.+..+.+++.-++++|+.-|. +.++.+| .+.+-
T Consensus 112 ~D-------~~t~~~--~~ti~~~~eG~glt~dg~~L~~SdGs-----------------------~~i~~iDp~T~~v~ 159 (262)
T 3nol_A 112 WN-------IRNLRQ--VRSFNYDGEGWGLTHNDQYLIMSDGT-----------------------PVLRFLDPESLTPV 159 (262)
T ss_dssp EE-------TTTCCE--EEEEECSSCCCCEEECSSCEEECCSS-----------------------SEEEEECTTTCSEE
T ss_pred EE-------CccCcE--EEEEECCCCceEEecCCCEEEEECCC-----------------------CeEEEEcCCCCeEE
Confidence 55 444443 22333223444666667778887652 2489999 54432
Q ss_pred EEcC--CCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEE
Q 013909 327 KVLP--PMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSV 384 (434)
Q Consensus 327 ~~~~--~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 384 (434)
..+. .-..|..... .+...+++||+--- ..+++.+.|+++.+=..
T Consensus 160 ~~I~V~~~g~~~~~lN-ELe~~~G~lyan~w------------~~~~I~vIDp~tG~V~~ 206 (262)
T 3nol_A 160 RTITVTAHGEELPELN-ELEWVDGEIFANVW------------QTNKIVRIDPETGKVTG 206 (262)
T ss_dssp EEEECEETTEECCCEE-EEEEETTEEEEEET------------TSSEEEEECTTTCBEEE
T ss_pred EEEEeccCCccccccc-eeEEECCEEEEEEc------------cCCeEEEEECCCCcEEE
Confidence 2222 1112211111 12445899886331 12489999999988544
No 27
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.36 E-value=0.0088 Score=53.55 Aligned_cols=198 Identities=12% Similarity=0.051 Sum_probs=113.7
Q ss_pred cEEEcCCCCCCCCc--eeEEEECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEe
Q 013909 108 EWEQMPSAPVPRLD--GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVS 185 (434)
Q Consensus 108 ~W~~~~~~p~~R~~--~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~G 185 (434)
.++-+...|..+.. .++...++.+|+-.|..+. +.+.++|+++.+=..--+++. ...+.+++..+++||+..
T Consensus 30 ~~~vv~~~phd~~~ftqGL~~~~~~LyestG~~g~----S~v~~vD~~Tgkv~~~~~l~~--~~FgeGit~~g~~ly~lt 103 (262)
T 3nol_A 30 DYQIVHSYPHDTKAFTEGFFYRNGYFYESTGLNGR----SSIRKVDIESGKTLQQIELGK--RYFGEGISDWKDKIVGLT 103 (262)
T ss_dssp EEEEEEEEECCTTCEEEEEEEETTEEEEEEEETTE----EEEEEECTTTCCEEEEEECCT--TCCEEEEEEETTEEEEEE
T ss_pred ceEEEEEecCCCCcccceEEEECCEEEEECCCCCC----ceEEEEECCCCcEEEEEecCC--ccceeEEEEeCCEEEEEE
Confidence 34444555554443 4555568999999987642 458999999998654444443 345667888999999985
Q ss_pred ccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEE
Q 013909 186 GQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRT 265 (434)
Q Consensus 186 G~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~ 265 (434)
.. .+.+++||+++.+-..- .+.+-.+..++.-++++|+.-|. +.+..+| |.+.+-..
T Consensus 104 w~--------~~~v~v~D~~t~~~~~t--i~~~~eG~glt~dg~~L~~SdGs------~~i~~iD-------p~T~~v~~ 160 (262)
T 3nol_A 104 WK--------NGLGFVWNIRNLRQVRS--FNYDGEGWGLTHNDQYLIMSDGT------PVLRFLD-------PESLTPVR 160 (262)
T ss_dssp SS--------SSEEEEEETTTCCEEEE--EECSSCCCCEEECSSCEEECCSS------SEEEEEC-------TTTCSEEE
T ss_pred ee--------CCEEEEEECccCcEEEE--EECCCCceEEecCCCEEEEECCC------CeEEEEc-------CCCCeEEE
Confidence 42 36899999988764322 22223555666667778887542 1222332 66655433
Q ss_pred ccCC---CCCCCce-eEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCC---CeEEcCCCCC---
Q 013909 266 EIPI---PRGGPHR-ACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEM---KWKVLPPMPK--- 334 (434)
Q Consensus 266 ~~~~---p~~~~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~---~W~~~~~~p~--- 334 (434)
-.+. +++.... .+...+++||+---. .++|.+.| .+. .|..++.+..
T Consensus 161 ~I~V~~~g~~~~~lNELe~~~G~lyan~w~----------------------~~~I~vIDp~tG~V~~~Id~~~L~~~~~ 218 (262)
T 3nol_A 161 TITVTAHGEELPELNELEWVDGEIFANVWQ----------------------TNKIVRIDPETGKVTGIIDLNGILAEAG 218 (262)
T ss_dssp EEECEETTEECCCEEEEEEETTEEEEEETT----------------------SSEEEEECTTTCBEEEEEECTTGGGGSC
T ss_pred EEEeccCCccccccceeEEECCEEEEEEcc----------------------CCeEEEEECCCCcEEEEEECCcCccccc
Confidence 2222 1121110 234458999964322 24699999 444 4555553321
Q ss_pred ---CCCccceeEEEE--CCEEEEEcCc
Q 013909 335 ---PNSHIECAWVIV--NNSIIITGGT 356 (434)
Q Consensus 335 ---~r~~~~~~~~~~--~~~i~v~GG~ 356 (434)
+....--++|.. .+++||.|-.
T Consensus 219 ~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 219 PLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp SCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred cccCcCCceEEEEEcCCCCEEEEECCC
Confidence 111111122443 5688888864
No 28
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.018 Score=53.85 Aligned_cols=233 Identities=11% Similarity=0.108 Sum_probs=114.0
Q ss_pred ceeeccCCCCcEEEcCCCCCCCCceeEEEE--C--CEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeE
Q 013909 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI--K--NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLG 173 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~--~--~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~ 173 (434)
.+..++....++..+..+.........+.. + +.+++.|+.++ .+.+||..+++|..+..+... ...-.+
T Consensus 34 ~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg------~v~iwd~~~~~~~~~~~~~~~-~~~v~~ 106 (379)
T 3jrp_A 34 TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG------KVLIWKEENGRWSQIAVHAVH-SASVNS 106 (379)
T ss_dssp CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS------CEEEEEEETTEEEEEEEECCC-SSCEEE
T ss_pred cEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC------EEEEEEcCCCceeEeeeecCC-CcceEE
Confidence 455555554455444433333332333333 2 56777777653 378889999887665444321 122233
Q ss_pred EEEe-C--CEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCC-CCcccceEEEE--------------CCEEEEEc
Q 013909 174 VVSD-G--RYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP-SPRYSPATQLW--------------RGRLHVMG 235 (434)
Q Consensus 174 ~~~~-~--~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p-~~r~~~~~~~~--------------~~~iyv~G 235 (434)
++.. + +.+++.|+.+ ..+..||..+..-.....+. ....-.+++.. ++.+++.|
T Consensus 107 ~~~~~~~~~~~l~~~~~d--------~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (379)
T 3jrp_A 107 VQWAPHEYGPLLLVASSD--------GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 178 (379)
T ss_dssp EEECCGGGCSEEEEEETT--------SEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEE
T ss_pred EEeCCCCCCCEEEEecCC--------CcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEE
Confidence 3333 2 4566666642 46778888765321110000 01111112211 46777777
Q ss_pred CCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEE--C---CEEEEEcCCCCCCCCCCCCCcccccccc
Q 013909 236 GSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVF--N---DRLFVVGGQEGDFMAKPGSPIFKCSRRH 310 (434)
Q Consensus 236 G~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~--~---~~iyv~GG~~~~~~~~~~~~~~~~~~~~ 310 (434)
+.++ .+.+|++. .....+.....+........++.+ + +++++.|+.++.
T Consensus 179 ~~dg-----~i~i~d~~-----~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~---------------- 232 (379)
T 3jrp_A 179 GADN-----LVKIWKYN-----SDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT---------------- 232 (379)
T ss_dssp ETTS-----CEEEEEEE-----TTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC----------------
T ss_pred eCCC-----eEEEEEec-----CCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCE----------------
Confidence 6543 56777764 233344444333322211122332 4 788888887654
Q ss_pred ceeeCcEEEeC-CCC--CeE--EcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECC-CCceEE
Q 013909 311 EVVYGDVYMLD-DEM--KWK--VLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLD-SLTWSV 384 (434)
Q Consensus 311 ~~~~~~v~~yd-~~~--~W~--~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~-~~~W~~ 384 (434)
+..|| ... .+. .+.....+ ..........++++++.|+.++ .+.+||+. ...|..
T Consensus 233 ------i~iwd~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~dg------------~i~iw~~~~~~~~~~ 293 (379)
T 3jrp_A 233 ------CIIWTQDNEQGPWKKTLLKEEKFP-DVLWRASWSLSGNVLALSGGDN------------KVTLWKENLEGKWEP 293 (379)
T ss_dssp ------EEEEEESSTTSCCEEEESSSSCCS-SCEEEEEECSSSCCEEEEESSS------------SEEEEEEEETTEEEE
T ss_pred ------EEEEeCCCCCccceeeeeccccCC-CcEEEEEEcCCCCEEEEecCCC------------cEEEEeCCCCCcccc
Confidence 55666 332 222 22211111 1111111334677777777542 57777776 567888
Q ss_pred eccCCC
Q 013909 385 IGKLPY 390 (434)
Q Consensus 385 ~~~lp~ 390 (434)
+..+..
T Consensus 294 ~~~~~~ 299 (379)
T 3jrp_A 294 AGEVHQ 299 (379)
T ss_dssp EEEEC-
T ss_pred ccceec
Confidence 765443
No 29
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=97.25 E-value=0.069 Score=49.34 Aligned_cols=99 Identities=16% Similarity=0.063 Sum_probs=52.5
Q ss_pred cceeeccCCCCcEEEcCCCCCCCCceeEEEE-C-CEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCC------CC
Q 013909 97 ATFADLPAPDLEWEQMPSAPVPRLDGAAIQI-K-NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKD------MA 168 (434)
Q Consensus 97 ~~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~-~-~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~------~~ 168 (434)
..+..+|..+.+-...-+. ....+.++.. + +.+|+.+..+ ..++++|+.+.+-...-+.+.. .+
T Consensus 69 ~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~------~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~ 140 (353)
T 3vgz_A 69 GVVYRLDPVTLEVTQAIHN--DLKPFGATINNTTQTLWFGNTVN------SAVTAIDAKTGEVKGRLVLDDRKRTEEVRP 140 (353)
T ss_dssp EEEEEECTTTCCEEEEEEE--SSCCCSEEEETTTTEEEEEETTT------TEEEEEETTTCCEEEEEESCCCCCCSSCCC
T ss_pred ccEEEEcCCCCeEEEEEec--CCCcceEEECCCCCEEEEEecCC------CEEEEEeCCCCeeEEEEecCCCccccccCC
Confidence 3677788777654322111 1122333333 3 4588876543 2589999998874322112110 01
Q ss_pred ceeeEEEEe--CCEEEEEeccCCCCCCCCCceeEEEECCCCceE
Q 013909 169 HSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWD 210 (434)
Q Consensus 169 r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~ 210 (434)
..-+++++. ++.+|+.+... ...++.+|+.+.+-.
T Consensus 141 ~~~~~~~~s~dg~~l~~~~~~~-------~~~i~~~d~~~~~~~ 177 (353)
T 3vgz_A 141 LQPRELVADDATNTVYISGIGK-------ESVIWVVDGGNIKLK 177 (353)
T ss_dssp CEEEEEEEETTTTEEEEEEESS-------SCEEEEEETTTTEEE
T ss_pred CCCceEEECCCCCEEEEEecCC-------CceEEEEcCCCCceE
Confidence 122344443 56788776311 256899999887643
No 30
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.21 E-value=0.033 Score=51.99 Aligned_cols=141 Identities=14% Similarity=0.229 Sum_probs=72.3
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
+++++++|+.+ ..+.+||..+.++..+..+... ...-.+++.. ++.+++.|+.+ ..+..||..+
T Consensus 19 ~~~~l~~~~~d------~~v~i~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~~~~~d--------g~i~vwd~~~ 83 (372)
T 1k8k_C 19 DRTQIAICPNN------HEVHIYEKSGNKWVQVHELKEH-NGQVTGVDWAPDSNRIVTCGTD--------RNAYVWTLKG 83 (372)
T ss_dssp TSSEEEEECSS------SEEEEEEEETTEEEEEEEEECC-SSCEEEEEEETTTTEEEEEETT--------SCEEEEEEET
T ss_pred CCCEEEEEeCC------CEEEEEeCCCCcEEeeeeecCC-CCcccEEEEeCCCCEEEEEcCC--------CeEEEEECCC
Confidence 56677777653 3488899999877655444321 1122233333 56666666643 3577888888
Q ss_pred CceEecCCCCCCcccceEEEE--CCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCC-CCceeEEEE--
Q 013909 207 RKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRG-GPHRACFVF-- 281 (434)
Q Consensus 207 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~-~~~~~~~~~-- 281 (434)
.++.....+.........+.+ ++++++.|+.+ ..+.+|++. ....|......... ........+
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~v~i~d~~------~~~~~~~~~~~~~~~~~~i~~~~~~~ 152 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS-----RVISICYFE------QENDWWVCKHIKKPIRSTVLSLDWHP 152 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETT-----SSEEEEEEE------TTTTEEEEEEECTTCCSCEEEEEECT
T ss_pred CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCC-----CEEEEEEec------CCCcceeeeeeecccCCCeeEEEEcC
Confidence 876554322221222222222 56666666643 356677764 22333332221111 111122222
Q ss_pred CCEEEEEcCCCCC
Q 013909 282 NDRLFVVGGQEGD 294 (434)
Q Consensus 282 ~~~iyv~GG~~~~ 294 (434)
+++.++.|+.++.
T Consensus 153 ~~~~l~~~~~dg~ 165 (372)
T 1k8k_C 153 NSVLLAAGSCDFK 165 (372)
T ss_dssp TSSEEEEEETTSC
T ss_pred CCCEEEEEcCCCC
Confidence 6777788876543
No 31
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.19 E-value=0.028 Score=50.61 Aligned_cols=185 Identities=13% Similarity=0.029 Sum_probs=103.7
Q ss_pred eeEEEEeC-CEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceE
Q 013909 171 HLGVVSDG-RYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHW 249 (434)
Q Consensus 171 ~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 249 (434)
-+++++.+ +.||+..|..+ .+.+.++|+.+++=...-+++.......++..+++||+..-.+ +.+.+|
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~------~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~-----~~v~vi 91 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYG------RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLK-----NIGFIY 91 (266)
T ss_dssp EEEEEECSTTEEEEEECSTT------TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTC-----SEEEEE
T ss_pred cccEEEeCCCeEEEECCCCC------CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecC-----CEEEEE
Confidence 36677765 89999877322 3689999999998655444554444556677789999996432 344455
Q ss_pred EEEeeccccccCceEEccCCCCC-CCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCC-e
Q 013909 250 SIAVKDGKALEKAWRTEIPIPRG-GPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMK-W 326 (434)
Q Consensus 250 ~~~~~~~~~~~~~W~~~~~~p~~-~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~-W 326 (434)
| +.+. +.+..+|.+ ..+.+++.-++++|+.-|. +.++.+| .+.+ -
T Consensus 92 D-------~~t~--~v~~~i~~g~~~g~glt~Dg~~l~vs~gs-----------------------~~l~viD~~t~~v~ 139 (266)
T 2iwa_A 92 D-------RRTL--SNIKNFTHQMKDGWGLATDGKILYGSDGT-----------------------SILYEIDPHTFKLI 139 (266)
T ss_dssp E-------TTTT--EEEEEEECCSSSCCEEEECSSSEEEECSS-----------------------SEEEEECTTTCCEE
T ss_pred E-------CCCC--cEEEEEECCCCCeEEEEECCCEEEEECCC-----------------------CeEEEEECCCCcEE
Confidence 5 3333 233222222 2333455556778887641 2589999 5543 2
Q ss_pred EEcC--CCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccCCC----------c--e
Q 013909 327 KVLP--PMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKLPY----------R--I 392 (434)
Q Consensus 327 ~~~~--~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~lp~----------~--r 392 (434)
..++ ..+.|..... .+...++++|+--.. .+++.+.|+++.+=...-+++. + -
T Consensus 140 ~~I~Vg~~~~p~~~~n-ele~~dg~lyvn~~~------------~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~ 206 (266)
T 2iwa_A 140 KKHNVKYNGHRVIRLN-ELEYINGEVWANIWQ------------TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDID 206 (266)
T ss_dssp EEEECEETTEECCCEE-EEEEETTEEEEEETT------------SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCC
T ss_pred EEEEECCCCcccccce-eEEEECCEEEEecCC------------CCeEEEEECCCCcEEEEEECCCcccccccccccccC
Confidence 2222 1122221111 223448888875432 2489999999887433212210 0 1
Q ss_pred eeeeeEEE--CCEEEEEcccc
Q 013909 393 KTTLTGFW--DGWLYFTSGQR 411 (434)
Q Consensus 393 ~~~~~~~~--~~~l~v~GG~~ 411 (434)
...+++.. ++++||.|+..
T Consensus 207 v~nGIa~~~~~~~lfVTgk~~ 227 (266)
T 2iwa_A 207 VLNGIAWDQENKRIFVTGKLW 227 (266)
T ss_dssp CEEEEEEETTTTEEEEEETTC
T ss_pred ceEEEEEcCCCCEEEEECCCC
Confidence 22344443 45888888743
No 32
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.10 E-value=0.0045 Score=58.73 Aligned_cols=177 Identities=12% Similarity=0.058 Sum_probs=86.5
Q ss_pred HHHhcCCCCCCcCcceeeeeecccccCCceEEecCCCCCccccceeeeEEEccCCcc-hhhhhccceeeccCCCCcEEEc
Q 013909 34 FMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQD-AERFLSATFADLPAPDLEWEQM 112 (434)
Q Consensus 34 ~l~~~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~g~~v~~~~~~~-~~~~~~~~~~~~~~~~~~W~~~ 112 (434)
++|+.|+. ++ .+..||++++.-...-.... ...++.....+..- ........+..+|..+++....
T Consensus 3 ~l~vs~~~-d~-------~v~v~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~ 69 (391)
T 1l0q_A 3 FAYIANSE-SD-------NISVIDVTSNKVTATIPVGS-----NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT 69 (391)
T ss_dssp EEEEEETT-TT-------EEEEEETTTTEEEEEEECSS-----SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred EEEEEcCC-CC-------EEEEEECCCCeEEEEeecCC-----CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEE
Confidence 45666766 56 78889988765433211111 11122221111110 1111234677788777654332
Q ss_pred CCCCCCCCceeEEEE--CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe--CCEEEEEeccC
Q 013909 113 PSAPVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQY 188 (434)
Q Consensus 113 ~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~ 188 (434)
-..+. .-..++.. +..||+.+..+ ..+.+||+.+++-....... ....+++.. ++.||+.++.
T Consensus 70 ~~~~~--~v~~~~~spdg~~l~~~~~~~------~~v~v~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~- 136 (391)
T 1l0q_A 70 VPAGS--SPQGVAVSPDGKQVYVTNMAS------STLSVIDTTSNTVAGTVKTG----KSPLGLALSPDGKKLYVTNNG- 136 (391)
T ss_dssp EECSS--SEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEETT-
T ss_pred EECCC--CccceEECCCCCEEEEEECCC------CEEEEEECCCCeEEEEEeCC----CCcceEEECCCCCEEEEEeCC-
Confidence 22222 22222222 34566665432 34899999998754432222 122344443 4467777653
Q ss_pred CCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEE--CCEEEEEcCCCCCCCCCCcceEE
Q 013909 189 GPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWS 250 (434)
Q Consensus 189 ~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~ 250 (434)
...+.+||+.+.+....-.... .-..++.. +..||+.++.+ ..+.+|+
T Consensus 137 -------~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~~dg~~l~~~~~~~-----~~v~~~d 186 (391)
T 1l0q_A 137 -------DKTVSVINTVTKAVINTVSVGR--SPKGIAVTPDGTKVYVANFDS-----MSISVID 186 (391)
T ss_dssp -------TTEEEEEETTTTEEEEEEECCS--SEEEEEECTTSSEEEEEETTT-----TEEEEEE
T ss_pred -------CCEEEEEECCCCcEEEEEecCC--CcceEEECCCCCEEEEEeCCC-----CEEEEEE
Confidence 2578999998877544322211 11222222 34677776543 2355555
No 33
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.09 E-value=0.0078 Score=57.01 Aligned_cols=126 Identities=14% Similarity=0.142 Sum_probs=63.3
Q ss_pred ceeeccCCCCcEEEcCCCCCCCCceeEEEE-C-CEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEE
Q 013909 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI-K-NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV 175 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~-~-~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~ 175 (434)
.+..+|..+++-... ++....-.+++.. + ..||+.++.+ ..+.++|+.+++-...-.... .-.+++
T Consensus 13 ~v~v~d~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~~~~~~d------~~i~v~d~~~~~~~~~~~~~~----~v~~~~ 80 (391)
T 1l0q_A 13 NISVIDVTSNKVTAT--IPVGSNPMGAVISPDGTKVYVANAHS------NDVSIIDTATNNVIATVPAGS----SPQGVA 80 (391)
T ss_dssp EEEEEETTTTEEEEE--EECSSSEEEEEECTTSSEEEEEEGGG------TEEEEEETTTTEEEEEEECSS----SEEEEE
T ss_pred EEEEEECCCCeEEEE--eecCCCcceEEECCCCCEEEEECCCC------CeEEEEECCCCeEEEEEECCC----CccceE
Confidence 566666666543222 1111111222222 3 3577777544 358999999887544322222 223344
Q ss_pred Ee--CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEE--CCEEEEEcCCCCCCCCCCcceEE
Q 013909 176 SD--GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWS 250 (434)
Q Consensus 176 ~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~ 250 (434)
.. ++.||+.+.. ...+.+||+.+++-...-... ..-..++.. +..+|+.++.+ ..+.+|+
T Consensus 81 ~spdg~~l~~~~~~--------~~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~-----~~v~~~d 144 (391)
T 1l0q_A 81 VSPDGKQVYVTNMA--------SSTLSVIDTTSNTVAGTVKTG--KSPLGLALSPDGKKLYVTNNGD-----KTVSVIN 144 (391)
T ss_dssp ECTTSSEEEEEETT--------TTEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEETTT-----TEEEEEE
T ss_pred ECCCCCEEEEEECC--------CCEEEEEECCCCeEEEEEeCC--CCcceEEECCCCCEEEEEeCCC-----CEEEEEE
Confidence 43 4567766542 257899999988654332221 111223322 34577776543 2455555
No 34
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.05 E-value=0.15 Score=47.27 Aligned_cols=243 Identities=12% Similarity=0.104 Sum_probs=122.1
Q ss_pred ceeeccCCCCcEEEcCCCCCCCCceeEEEE-CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEE
Q 013909 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS 176 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~ 176 (434)
.++.-.....+|+.+.. |....-.++... .+.+|++|- .+ .+++-+-.-.+|+.+............++..
T Consensus 16 ~~~~s~d~g~~W~~~~~-~~~~~~~~v~~~~~~~~~~~G~-~g------~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~ 87 (327)
T 2xbg_A 16 GSAIPALDYNPWEAIQL-PTTATILDMSFIDRHHGWLVGV-NA------TLMETRDGGQTWEPRTLVLDHSDYRFNSVSF 87 (327)
T ss_dssp --CCCBCSSCCEEEEEC-SCSSCEEEEEESSSSCEEEEET-TT------EEEEESSTTSSCEECCCCCSCCCCEEEEEEE
T ss_pred ceeecCCCCCCceEeec-CCCCcEEEEEECCCCcEEEEcC-CC------eEEEeCCCCCCCeECCCCCCCCCccEEEEEe
Confidence 45555556679998863 333322333322 567888653 11 2444433446899875322111223445556
Q ss_pred eCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCC-CCcccceEE-EECCEEEEEcCCCCCCCCCCcceEEEEee
Q 013909 177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP-SPRYSPATQ-LWRGRLHVMGGSKENRHTPGLEHWSIAVK 254 (434)
Q Consensus 177 ~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p-~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 254 (434)
.++.+|++|-. ..+++-+-.-.+|+.+...+ .+-....++ .-++++|+.|... .+|...
T Consensus 88 ~~~~~~~~g~~---------g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g--------~v~~S~-- 148 (327)
T 2xbg_A 88 QGNEGWIVGEP---------PIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVG--------AIYRTK-- 148 (327)
T ss_dssp ETTEEEEEEET---------TEEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTC--------CEEEES--
T ss_pred cCCeEEEEECC---------CeEEEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCc--------cEEEEc--
Confidence 67889987531 23444332346899986431 221122333 3468888887421 234321
Q ss_pred ccccccCceEEccCCCCCCCceeEEEE-CCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-C-CCCeEEcCC
Q 013909 255 DGKALEKAWRTEIPIPRGGPHRACFVF-NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-D-EMKWKVLPP 331 (434)
Q Consensus 255 ~~~~~~~~W~~~~~~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~-~~~W~~~~~ 331 (434)
-...+|+.+....... -+.++.. +++++++|- .+ .++.-+ . ..+|+.+..
T Consensus 149 ---DgG~tW~~~~~~~~~~-~~~~~~~~~~~~~~~g~-~G----------------------~~~~S~d~gG~tW~~~~~ 201 (327)
T 2xbg_A 149 ---DSGKNWQALVQEAIGV-MRNLNRSPSGEYVAVSS-RG----------------------SFYSTWEPGQTAWEPHNR 201 (327)
T ss_dssp ---STTSSEEEEECSCCCC-EEEEEECTTSCEEEEET-TS----------------------SEEEEECTTCSSCEEEEC
T ss_pred ---CCCCCCEEeecCCCcc-eEEEEEcCCCcEEEEEC-CC----------------------cEEEEeCCCCCceeECCC
Confidence 2356898865422222 1233332 566776653 22 255553 3 579999853
Q ss_pred CCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECC-CCceEEecc--CCCceeeeeeEEE-CCEEEEE
Q 013909 332 MPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLD-SLTWSVIGK--LPYRIKTTLTGFW-DGWLYFT 407 (434)
Q Consensus 332 ~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~-~~~W~~~~~--lp~~r~~~~~~~~-~~~l~v~ 407 (434)
+.+...+.. +...++++|+.+.. . .+++.+.. ..+|+.+.. ++.......++.. ++++|++
T Consensus 202 -~~~~~~~~~-~~~~~g~~~~~~~~---G----------~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 266 (327)
T 2xbg_A 202 -TTSRRLHNM-GFTPDGRLWMIVNG---G----------KIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLA 266 (327)
T ss_dssp -CSSSCEEEE-EECTTSCEEEEETT---T----------EEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEE
T ss_pred -CCCCcccee-EECCCCCEEEEeCC---c----------eEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEE
Confidence 333333222 12346788877641 1 34444333 678987642 3332222333332 5688888
Q ss_pred cc
Q 013909 408 SG 409 (434)
Q Consensus 408 GG 409 (434)
|+
T Consensus 267 g~ 268 (327)
T 2xbg_A 267 GG 268 (327)
T ss_dssp ES
T ss_pred eC
Confidence 75
No 35
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=97.04 E-value=0.0035 Score=58.01 Aligned_cols=20 Identities=10% Similarity=0.099 Sum_probs=14.2
Q ss_pred cEEEEECCCCceEEeccCCC
Q 013909 371 EVFQFHLDSLTWSVIGKLPY 390 (434)
Q Consensus 371 ~v~~yd~~~~~W~~~~~lp~ 390 (434)
.+|.+|+++.+++.+..++.
T Consensus 302 ~v~~~d~~~g~~~~~~~~~~ 321 (343)
T 1ri6_A 302 SVYEIVGEQGLLHEKGRYAV 321 (343)
T ss_dssp EEEEEETTTTEEEEEEEEEC
T ss_pred EEEEEcCCCceeeEcccccc
Confidence 35556888888988766554
No 36
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.02 E-value=0.099 Score=47.60 Aligned_cols=189 Identities=11% Similarity=0.111 Sum_probs=90.1
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEE-eCCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
++++++.|+.++ .+.+||..+.+-...-.... ..-.+++. -++.+++.|+.+ ..+..||+.+
T Consensus 76 ~~~~l~s~~~d~------~i~vwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~d--------~~i~iwd~~~ 138 (312)
T 4ery_A 76 DSNLLVSASDDK------TLKIWDVSSGKCLKTLKGHS---NYVFCCNFNPQSNLIVSGSFD--------ESVRIWDVKT 138 (312)
T ss_dssp TSSEEEEEETTS------EEEEEETTTCCEEEEEECCS---SCEEEEEECSSSSEEEEEETT--------SCEEEEETTT
T ss_pred CCCEEEEECCCC------EEEEEECCCCcEEEEEcCCC---CCEEEEEEcCCCCEEEEEeCC--------CcEEEEECCC
Confidence 566777777642 48889988775322111111 11122222 245566667643 3578899887
Q ss_pred CceEecCCCCCCcccceEEEE--CCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEE--EC
Q 013909 207 RKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFV--FN 282 (434)
Q Consensus 207 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~--~~ 282 (434)
.+-... ++........+.+ ++++++.|+.++ .+.+|++ .+.+-.......... ....+. .+
T Consensus 139 ~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~~wd~-------~~~~~~~~~~~~~~~-~~~~~~~~~~ 203 (312)
T 4ery_A 139 GKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDG-----LCRIWDT-------ASGQCLKTLIDDDNP-PVSFVKFSPN 203 (312)
T ss_dssp CCEEEE--ECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEET-------TTCCEEEEECCSSCC-CEEEEEECTT
T ss_pred CEEEEE--ecCCCCcEEEEEEcCCCCEEEEEeCCC-----cEEEEEC-------CCCceeeEEeccCCC-ceEEEEECCC
Confidence 653222 1111111122222 566777776543 4566663 232221111111111 112222 26
Q ss_pred CEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCC-eEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCC
Q 013909 283 DRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMK-WKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKH 360 (434)
Q Consensus 283 ~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~-W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~ 360 (434)
++.++.|+.++ .+..|| .+.+ -..+.................++.+++.|+.++
T Consensus 204 ~~~l~~~~~d~----------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg-- 259 (312)
T 4ery_A 204 GKYILAATLDN----------------------TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN-- 259 (312)
T ss_dssp SSEEEEEETTT----------------------EEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTS--
T ss_pred CCEEEEEcCCC----------------------eEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCC--
Confidence 67777777654 367777 4332 222221111111111121234677788887653
Q ss_pred CCccceeeeccEEEEECCCCce
Q 013909 361 PMTKRMILVGEVFQFHLDSLTW 382 (434)
Q Consensus 361 ~~~~~~~~~~~v~~yd~~~~~W 382 (434)
.+.+||+++.+-
T Consensus 260 ----------~i~vwd~~~~~~ 271 (312)
T 4ery_A 260 ----------LVYIWNLQTKEI 271 (312)
T ss_dssp ----------CEEEEETTTCCE
T ss_pred ----------EEEEEECCCchh
Confidence 688999887764
No 37
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.97 E-value=0.034 Score=50.08 Aligned_cols=113 Identities=13% Similarity=-0.007 Sum_probs=68.9
Q ss_pred EEEcCCCCCCCC--ceeEEEEC-CEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEe
Q 013909 109 WEQMPSAPVPRL--DGAAIQIK-NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVS 185 (434)
Q Consensus 109 W~~~~~~p~~R~--~~~~~~~~-~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~G 185 (434)
.+.+...|.+.. -+.+...+ +.+|+..|..+. +.+.++|+.+++=..--+++. .....+++..+++||+..
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~----s~v~~iD~~tg~v~~~i~l~~--~~fgeGi~~~g~~lyv~t 82 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGR----SSVRQVALQTGKVENIHKMDD--SYFGEGLTLLNEKLYQVV 82 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECSTTEEEEEECSTTT----CEEEEEETTTCCEEEEEECCT--TCCEEEEEEETTEEEEEE
T ss_pred ceEEEEEECCCCCCcccEEEeCCCeEEEECCCCCC----CEEEEEECCCCCEEEEEecCC--CcceEEEEEeCCEEEEEE
Confidence 334444454433 24555555 799998875332 359999999998544333332 345567788899999985
Q ss_pred ccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEECCEEEEEcC
Q 013909 186 GQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGG 236 (434)
Q Consensus 186 G~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG 236 (434)
-. .+.+++||+.+.+=...-+.+. -.+..++.-++++|+.-|
T Consensus 83 ~~--------~~~v~viD~~t~~v~~~i~~g~-~~g~glt~Dg~~l~vs~g 124 (266)
T 2iwa_A 83 WL--------KNIGFIYDRRTLSNIKNFTHQM-KDGWGLATDGKILYGSDG 124 (266)
T ss_dssp TT--------CSEEEEEETTTTEEEEEEECCS-SSCCEEEECSSSEEEECS
T ss_pred ec--------CCEEEEEECCCCcEEEEEECCC-CCeEEEEECCCEEEEECC
Confidence 31 3689999998865322111121 223445555678998754
No 38
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.94 E-value=0.2 Score=48.34 Aligned_cols=169 Identities=12% Similarity=0.080 Sum_probs=82.9
Q ss_pred CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEE-EECCEEEEEcCCCCCCCCCCcceEEEEeecc
Q 013909 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQ-LWRGRLHVMGGSKENRHTPGLEHWSIAVKDG 256 (434)
Q Consensus 178 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~ 256 (434)
++.+++.|+.+ ..+..||..+.+-...-...... -.+++ .-+++.++.|+.+ ..+.+|++
T Consensus 279 ~~~~l~~~~~d--------~~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~sg~~d-----g~i~vwd~----- 339 (464)
T 3v7d_B 279 HGNIVVSGSYD--------NTLIVWDVAQMKCLYILSGHTDR-IYSTIYDHERKRCISASMD-----TTIRIWDL----- 339 (464)
T ss_dssp ETTEEEEEETT--------SCEEEEETTTTEEEEEECCCSSC-EEEEEEETTTTEEEEEETT-----SCEEEEET-----
T ss_pred CCCEEEEEeCC--------CeEEEEECCCCcEEEEecCCCCC-EEEEEEcCCCCEEEEEeCC-----CcEEEEEC-----
Confidence 34455566543 35788998776543221111111 11222 2245666666654 34666763
Q ss_pred ccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCC--eEEcCCCC
Q 013909 257 KALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMK--WKVLPPMP 333 (434)
Q Consensus 257 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~--W~~~~~~p 333 (434)
.+.+ .+..+........++..++..++.|+.++. +..|| .+.. +.... .
T Consensus 340 --~~~~--~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~----------------------v~vwd~~~~~~~~~~~~--~ 391 (464)
T 3v7d_B 340 --ENGE--LMYTLQGHTALVGLLRLSDKFLVSAAADGS----------------------IRGWDANDYSRKFSYHH--T 391 (464)
T ss_dssp --TTTE--EEEEECCCSSCEEEEEECSSEEEEEETTSE----------------------EEEEETTTCCEEEEEEC--T
T ss_pred --CCCc--EEEEEeCCCCcEEEEEEcCCEEEEEeCCCc----------------------EEEEECCCCceeeeecC--C
Confidence 2222 222222122222445567778888886643 67777 3332 22211 1
Q ss_pred CCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccCCCceeeeeeEEECCEEEEEcc
Q 013909 334 KPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKLPYRIKTTLTGFWDGWLYFTSG 409 (434)
Q Consensus 334 ~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~l~v~GG 409 (434)
. . ....+...++++++.|+ + +.+.+||+++.+-......+....-..++..++.+++.++
T Consensus 392 ~--~-~~~~~~~~~~~~l~~~~-d------------g~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~~l~~~~~ 451 (464)
T 3v7d_B 392 N--L-SAITTFYVSDNILVSGS-E------------NQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVE 451 (464)
T ss_dssp T--C-CCEEEEEECSSEEEEEE-T------------TEEEEEETTTCCEEESCTTTTCSEEEEEEEETTEEEEEEE
T ss_pred C--C-ccEEEEEeCCCEEEEec-C------------CeEEEEECCCCcEEehhhccCCCcEEEEEecCCEEEEEEE
Confidence 1 1 12233566778777776 2 2689999999876543223332222333333555555554
No 39
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.93 E-value=0.023 Score=54.92 Aligned_cols=217 Identities=9% Similarity=0.061 Sum_probs=108.9
Q ss_pred eEEEECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEE
Q 013909 123 AAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVL 202 (434)
Q Consensus 123 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~y 202 (434)
.+...++..++.|+.++ .+.+||..+.+-...-... .........++.+++.|+.+ ..+.+|
T Consensus 137 ~~~~~d~~~l~~g~~dg------~i~iwd~~~~~~~~~~~~h----~~~v~~l~~~~~~l~sg~~d--------g~i~vw 198 (435)
T 1p22_A 137 YCLQYDDQKIVSGLRDN------TIKIWDKNTLECKRILTGH----TGSVLCLQYDERVIITGSSD--------STVRVW 198 (435)
T ss_dssp EEEECCSSEEEEEESSS------CEEEEESSSCCEEEEECCC----SSCEEEEECCSSEEEEEETT--------SCEEEE
T ss_pred EEEEECCCEEEEEeCCC------eEEEEeCCCCeEEEEEcCC----CCcEEEEEECCCEEEEEcCC--------CeEEEE
Confidence 34445778888887653 3888898877643321111 11112223367777777753 357888
Q ss_pred ECCCCceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEEC
Q 013909 203 DSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFN 282 (434)
Q Consensus 203 d~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~ 282 (434)
|..+.+-... +.........+..++..++.|+.+ ..+.+|++. ..........+........++..+
T Consensus 199 d~~~~~~~~~--~~~h~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~------~~~~~~~~~~~~~~~~~v~~~~~~ 265 (435)
T 1p22_A 199 DVNTGEMLNT--LIHHCEAVLHLRFNNGMMVTCSKD-----RSIAVWDMA------SPTDITLRRVLVGHRAAVNVVDFD 265 (435)
T ss_dssp ESSSCCEEEE--ECCCCSCEEEEECCTTEEEEEETT-----SCEEEEECS------SSSCCEEEEEECCCSSCEEEEEEE
T ss_pred ECCCCcEEEE--EcCCCCcEEEEEEcCCEEEEeeCC-----CcEEEEeCC------CCCCceeeeEecCCCCcEEEEEeC
Confidence 9887764322 111122223334455666776654 356677642 111111111111111122344447
Q ss_pred CEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCe-EEcCCCCCCCCccceeEEEECCEEEEEcCcCCCC
Q 013909 283 DRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKW-KVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKH 360 (434)
Q Consensus 283 ~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W-~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~ 360 (434)
+..++.|+.++. +..|| .+.+- ..+.. .... ...+..++.+++.|+.++
T Consensus 266 ~~~l~s~~~dg~----------------------i~vwd~~~~~~~~~~~~---~~~~--v~~~~~~~~~l~~g~~dg-- 316 (435)
T 1p22_A 266 DKYIVSASGDRT----------------------IKVWNTSTCEFVRTLNG---HKRG--IACLQYRDRLVVSGSSDN-- 316 (435)
T ss_dssp TTEEEEEETTSE----------------------EEEEETTTCCEEEEEEC---CSSC--EEEEEEETTEEEEEETTS--
T ss_pred CCEEEEEeCCCe----------------------EEEEECCcCcEEEEEcC---CCCc--EEEEEeCCCEEEEEeCCC--
Confidence 777777776543 77777 44321 12211 1111 122444667777777542
Q ss_pred CCccceeeeccEEEEECCCCceEEeccCCCceeeeeeEEECCEEEEEcccc
Q 013909 361 PMTKRMILVGEVFQFHLDSLTWSVIGKLPYRIKTTLTGFWDGWLYFTSGQR 411 (434)
Q Consensus 361 ~~~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~l~v~GG~~ 411 (434)
.+.+||+.+.+-.. .+........++.++++.++.|+.+
T Consensus 317 ----------~i~iwd~~~~~~~~--~~~~h~~~v~~~~~~~~~l~sg~~d 355 (435)
T 1p22_A 317 ----------TIRLWDIECGACLR--VLEGHEELVRCIRFDNKRIVSGAYD 355 (435)
T ss_dssp ----------CEEEEETTTCCEEE--EECCCSSCEEEEECCSSEEEEEETT
T ss_pred ----------eEEEEECCCCCEEE--EEeCCcCcEEEEEecCCEEEEEeCC
Confidence 68899988765332 2222222233334477777777644
No 40
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.033 Score=52.00 Aligned_cols=104 Identities=10% Similarity=0.093 Sum_probs=55.9
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-C--CEEEEEeccCCCCCCCCCceeEEEEC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-G--RYIYIVSGQYGPQCRGPTSRTFVLDS 204 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~--~~lyv~GG~~~~~~~~~~~~~~~yd~ 204 (434)
++..++.|+.++ .+.+||....++..+..+... ...-.+++.. + +.+++.|+.+ ..+.+||.
T Consensus 22 ~~~~l~~~~~dg------~i~iw~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~d--------g~v~iwd~ 86 (379)
T 3jrp_A 22 YGKRLATCSSDK------TIKIFEVEGETHKLIDTLTGH-EGPVWRVDWAHPKFGTILASCSYD--------GKVLIWKE 86 (379)
T ss_dssp SSSEEEEEETTS------CEEEEEEETTEEEEEEEECCC-SSCEEEEEECCGGGCSEEEEEETT--------SCEEEEEE
T ss_pred CCCEEEEEECCC------cEEEEecCCCcceeeeEecCC-CCcEEEEEeCCCCCCCEEEEeccC--------CEEEEEEc
Confidence 456677776543 377788776666655443321 1122334432 2 5666677643 35788898
Q ss_pred CCCceEecCCCCCCcccceEEEE--C--CEEEEEcCCCCCCCCCCcceEEE
Q 013909 205 ETRKWDSIPPLPSPRYSPATQLW--R--GRLHVMGGSKENRHTPGLEHWSI 251 (434)
Q Consensus 205 ~t~~W~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~~~ 251 (434)
.+.+|..+..+.........+.+ + +.+++.|+.++ .+.+|++
T Consensus 87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~-----~i~v~d~ 132 (379)
T 3jrp_A 87 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG-----KVSVVEF 132 (379)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS-----EEEEEEC
T ss_pred CCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCC-----cEEEEec
Confidence 88887666544322222222222 2 55666665543 4455553
No 41
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=96.85 E-value=0.21 Score=44.75 Aligned_cols=117 Identities=9% Similarity=0.043 Sum_probs=60.6
Q ss_pred ceeeccCCCCcEEEcCCCCCC-CCceeEEEE-CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEE
Q 013909 98 TFADLPAPDLEWEQMPSAPVP-RLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV 175 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~-R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~ 175 (434)
.+..+++. .+.+... +|.. ..-.+++.. ++++|+..... ..+.+||+ +++...... +.. ...-.+++
T Consensus 79 ~i~~~~~~-g~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~------~~i~~~d~-~g~~~~~~~-~~~-~~~~~~i~ 147 (299)
T 2z2n_A 79 KIGRITKK-GIIKEYT-LPNPDSAPYGITEGPNGDIWFTEMNG------NRIGRITD-DGKIREYEL-PNK-GSYPSFIT 147 (299)
T ss_dssp EEEEECTT-SCEEEEE-CSSTTCCEEEEEECTTSCEEEEETTT------TEEEEECT-TCCEEEEEC-SST-TCCEEEEE
T ss_pred eEEEECCC-CcEEEEe-CCCcCCCceeeEECCCCCEEEEecCC------ceEEEECC-CCCEEEecC-CCC-CCCCceEE
Confidence 57777775 4454433 2211 222333333 57888875321 24889999 666554321 111 12234455
Q ss_pred Ee-CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCccc-ceEEEE-CCEEEEEc
Q 013909 176 SD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYS-PATQLW-RGRLHVMG 235 (434)
Q Consensus 176 ~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~G 235 (434)
.. ++.+|+..-. ...+++||+ +.+..... .+..... ..++.. +++||+..
T Consensus 148 ~~~~g~l~v~~~~--------~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~ 200 (299)
T 2z2n_A 148 LGSDNALWFTENQ--------NNAIGRITE-SGDITEFK-IPTPASGPVGITKGNDDALWFVE 200 (299)
T ss_dssp ECTTSCEEEEETT--------TTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECTTSSEEEEE
T ss_pred EcCCCCEEEEeCC--------CCEEEEEcC-CCcEEEee-CCCCCCcceeEEECCCCCEEEEc
Confidence 54 5788886421 257899999 77766541 1111111 223332 46788875
No 42
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=96.82 E-value=0.063 Score=51.43 Aligned_cols=98 Identities=13% Similarity=0.055 Sum_probs=54.7
Q ss_pred ceeeccCCCCcEEEcCCCC---CCCCceeEEEE--CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceee
Q 013909 98 TFADLPAPDLEWEQMPSAP---VPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHL 172 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p---~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~ 172 (434)
.+..+|..+++.......+ .+......+.. ++++|+.++.+ ..+.+||+.+.+-...-.... ..-.
T Consensus 145 ~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d------~~v~~~d~~~~~~~~~~~~~~---~~~~ 215 (433)
T 3bws_A 145 GMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA------NAVHVFDLKTLAYKATVDLTG---KWSK 215 (433)
T ss_dssp SEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG------TEEEEEETTTCCEEEEEECSS---SSEE
T ss_pred eEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC------CEEEEEECCCceEEEEEcCCC---CCee
Confidence 5778888777665543321 11112222333 77888888754 348899998865432211111 1222
Q ss_pred EEEEe--CCEEEEEeccCCCCCCCCCceeEEEECCCCceEec
Q 013909 173 GVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSI 212 (434)
Q Consensus 173 ~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~ 212 (434)
+++.. ++.+|+.++. ...+.+||+.+.+....
T Consensus 216 ~~~~~~~~~~l~~~~~~--------~~~i~~~d~~~~~~~~~ 249 (433)
T 3bws_A 216 ILLYDPIRDLVYCSNWI--------SEDISVIDRKTKLEIRK 249 (433)
T ss_dssp EEEEETTTTEEEEEETT--------TTEEEEEETTTTEEEEE
T ss_pred EEEEcCCCCEEEEEecC--------CCcEEEEECCCCcEEEE
Confidence 33333 4567777653 24689999988765443
No 43
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.72 E-value=0.45 Score=45.68 Aligned_cols=240 Identities=11% Similarity=0.056 Sum_probs=117.1
Q ss_pred cceeeccCCCCcEEEcCCCCCCCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEE
Q 013909 97 ATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS 176 (434)
Q Consensus 97 ~~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~ 176 (434)
..+..+|..+.+-. ..+......-.+....+.+++.|+.++ .+.+||..+++-...-.... ..-.++..
T Consensus 139 g~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~~~~l~s~~~dg------~i~vwd~~~~~~~~~~~~h~---~~v~~~~~ 207 (445)
T 2ovr_B 139 NTLKVWSAVTGKCL--RTLVGHTGGVWSSQMRDNIIISGSTDR------TLKVWNAETGECIHTLYGHT---STVRCMHL 207 (445)
T ss_dssp SCEEEEETTTCCEE--EECCCCSSCEEEEEEETTEEEEEETTS------CEEEEETTTTEEEEEECCCS---SCEEEEEE
T ss_pred CcEEEEECCCCcEE--EEEcCCCCCEEEEEecCCEEEEEeCCC------eEEEEECCcCcEEEEECCCC---CcEEEEEe
Confidence 35666666554422 222222222233334455677777653 38889998876432211111 11223344
Q ss_pred eCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeecc
Q 013909 177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDG 256 (434)
Q Consensus 177 ~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~ 256 (434)
.++ .++.|+.+ ..+..||..+.+-... +.........+..+++.++.|+.++ .+..|++
T Consensus 208 ~~~-~l~s~s~d--------g~i~~wd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~~~dg-----~i~iwd~----- 266 (445)
T 2ovr_B 208 HEK-RVVSGSRD--------ATLRVWDIETGQCLHV--LMGHVAAVRCVQYDGRRVVSGAYDF-----MVKVWDP----- 266 (445)
T ss_dssp ETT-EEEEEETT--------SEEEEEESSSCCEEEE--EECCSSCEEEEEECSSCEEEEETTS-----CEEEEEG-----
T ss_pred cCC-EEEEEeCC--------CEEEEEECCCCcEEEE--EcCCcccEEEEEECCCEEEEEcCCC-----EEEEEEC-----
Confidence 444 45556532 4678899887653222 1111112223344777777776543 4566662
Q ss_pred ccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCC-eEEcCCCCC
Q 013909 257 KALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMK-WKVLPPMPK 334 (434)
Q Consensus 257 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~-W~~~~~~p~ 334 (434)
.+.+ .+..+........++.+++..++.|+.++. +..|| .+.+ -..+..
T Consensus 267 --~~~~--~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~----------------------i~i~d~~~~~~~~~~~~--- 317 (445)
T 2ovr_B 267 --ETET--CLHTLQGHTNRVYSLQFDGIHVVSGSLDTS----------------------IRVWDVETGNCIHTLTG--- 317 (445)
T ss_dssp --GGTE--EEEEECCCSSCEEEEEECSSEEEEEETTSC----------------------EEEEETTTCCEEEEECC---
T ss_pred --CCCc--EeEEecCCCCceEEEEECCCEEEEEeCCCe----------------------EEEEECCCCCEEEEEcC---
Confidence 2322 222222111122444558888888887653 77777 4432 222221
Q ss_pred CCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccCCC-ceeeeeeEEECCEEEEEcccc
Q 013909 335 PNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKLPY-RIKTTLTGFWDGWLYFTSGQR 411 (434)
Q Consensus 335 ~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~lp~-~r~~~~~~~~~~~l~v~GG~~ 411 (434)
.... ..+ ...++..++.|+.++ .+.+||+.+.+-...-..+. ......++.+++++++.|+.+
T Consensus 318 ~~~~-v~~-~~~~~~~l~~~~~dg------------~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d 381 (445)
T 2ovr_B 318 HQSL-TSG-MELKDNILVSGNADS------------TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDD 381 (445)
T ss_dssp CCSC-EEE-EEEETTEEEEEETTS------------CEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETT
T ss_pred Cccc-EEE-EEEeCCEEEEEeCCC------------eEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCC
Confidence 1111 112 334555667776542 68899987766433211111 222233444566666666644
No 44
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.62 E-value=0.42 Score=49.95 Aligned_cols=237 Identities=11% Similarity=0.053 Sum_probs=121.6
Q ss_pred ceeeccCCCCcEEEcCCC-CCCCC-ceeEEEE-CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEE
Q 013909 98 TFADLPAPDLEWEQMPSA-PVPRL-DGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGV 174 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~-p~~R~-~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~ 174 (434)
-+..+++.+.+++..... ..+.. -.+++.. ++.|++ |... .-+.+||+.+++++.+.....+ ...-.++
T Consensus 384 Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~------~Gl~~~~~~~~~~~~~~~~~~~-~~~v~~i 455 (781)
T 3v9f_A 384 GINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYL------GNISYYNTRLKKFQIIELEKNE-LLDVRVF 455 (781)
T ss_dssp CEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETT------EEEEEECSSSCEEEECCSTTTC-CCCEEEE
T ss_pred cEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-Eecc------CCEEEEcCCCCcEEEeccCCCC-CCeEEEE
Confidence 467777776666544211 01111 1222222 567877 3221 2389999999999887532111 1222334
Q ss_pred EEe-CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCC-----CCcccceEE-EECCEEEEEcCCCCCCCCCCcc
Q 013909 175 VSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP-----SPRYSPATQ-LWRGRLHVMGGSKENRHTPGLE 247 (434)
Q Consensus 175 ~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p-----~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~ 247 (434)
+.. ++.|++... .-+++||+.+.+|+.....+ .... .+++ ..++.|++..-..+ +.
T Consensus 456 ~~d~~g~lwigt~----------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i-~~i~~d~~g~lWigt~~~G------l~ 518 (781)
T 3v9f_A 456 YEDKNKKIWIGTH----------AGVFVIDLASKKVIHHYDTSNSQLLENFV-RSIAQDSEGRFWIGTFGGG------VG 518 (781)
T ss_dssp EECTTSEEEEEET----------TEEEEEESSSSSCCEEECTTTSSCSCSCE-EEEEECTTCCEEEEESSSC------EE
T ss_pred EECCCCCEEEEEC----------CceEEEeCCCCeEEecccCccccccccee-EEEEEcCCCCEEEEEcCCC------EE
Confidence 443 578887421 45889999998887654322 1111 1222 22567777532111 22
Q ss_pred eEEEEeeccccccCceEEccC---CCCCCCceeEEE-ECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcE-EEeC-
Q 013909 248 HWSIAVKDGKALEKAWRTEIP---IPRGGPHRACFV-FNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDV-YMLD- 321 (434)
Q Consensus 248 ~~~~~~~~~~~~~~~W~~~~~---~p~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~yd- 321 (434)
+|+ +.+.+++.... +|.... .++.. .++.||+-.. . -+ ++||
T Consensus 519 ~~~-------~~~~~~~~~~~~~~l~~~~i-~~i~~d~~g~lWi~T~-~-----------------------Glv~~~d~ 566 (781)
T 3v9f_A 519 IYT-------PDMQLVRKFNQYEGFCSNTI-NQIYRSSKGQMWLATG-E-----------------------GLVCFPSA 566 (781)
T ss_dssp EEC-------TTCCEEEEECTTTTCSCSCE-EEEEECTTSCEEEEET-T-----------------------EEEEESCT
T ss_pred EEe-------CCCCeEEEccCCCCCCCCee-EEEEECCCCCEEEEEC-C-----------------------CceEEECC
Confidence 333 55666665432 222211 12222 2677887543 2 15 8899
Q ss_pred CCCCeEEcC---CCCCCCCccceeEEE-ECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEecc---CCCceee
Q 013909 322 DEMKWKVLP---PMPKPNSHIECAWVI-VNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGK---LPYRIKT 394 (434)
Q Consensus 322 ~~~~W~~~~---~~p~~r~~~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~---lp~~r~~ 394 (434)
.+.+++... .+|...- . +++. .++.|++.+. +-+.+||+++.++..... ++.....
T Consensus 567 ~~~~~~~~~~~~gl~~~~i--~-~i~~d~~g~lW~~t~--------------~Gl~~~~~~~~~~~~~~~~dGl~~~~f~ 629 (781)
T 3v9f_A 567 RNFDYQVFQRKEGLPNTHI--R-AISEDKNGNIWASTN--------------TGISCYITSKKCFYTYDHSNNIPQGSFI 629 (781)
T ss_dssp TTCCCEEECGGGTCSCCCC--C-EEEECSSSCEEEECS--------------SCEEEEETTTTEEEEECGGGTCCSSCEE
T ss_pred CCCcEEEccccCCCCCceE--E-EEEECCCCCEEEEcC--------------CceEEEECCCCceEEecccCCccccccc
Confidence 666776653 2333221 1 2222 3577877542 148899999999888643 5544433
Q ss_pred -eeeEEE-CCEEEEEc
Q 013909 395 -TLTGFW-DGWLYFTS 408 (434)
Q Consensus 395 -~~~~~~-~~~l~v~G 408 (434)
.+++.. +++||+-|
T Consensus 630 ~~~~~~~~~G~l~~g~ 645 (781)
T 3v9f_A 630 SGCVTKDHNGLIYFGS 645 (781)
T ss_dssp EEEEEECTTSCEEEEE
T ss_pred cCceEECCCCEEEEEC
Confidence 233333 56666543
No 45
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.028 Score=58.78 Aligned_cols=233 Identities=11% Similarity=0.092 Sum_probs=114.2
Q ss_pred ceeeccCCCCcEEEcCCCCCCCCceeEEEE--C--CEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeE
Q 013909 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI--K--NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLG 173 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~--~--~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~ 173 (434)
.+..++....++..+..+......-..+.. + +..++.|+.++ .+.+||..+++|..+..+... ...-.+
T Consensus 32 ~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg------~I~vwd~~~~~~~~~~~~~~h-~~~V~~ 104 (753)
T 3jro_A 32 TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG------KVLIWKEENGRWSQIAVHAVH-SASVNS 104 (753)
T ss_dssp EEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS------CEEEEEEETTEEEEEEEECCC-SSCEEE
T ss_pred cEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCC------eEEEEECCCCcccccccccCC-CCCeEE
Confidence 455555555555555444433333333333 3 66777777653 378889988887665443321 122233
Q ss_pred EEEe-C--CEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCC-CCcccceEEEE--------------CCEEEEEc
Q 013909 174 VVSD-G--RYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP-SPRYSPATQLW--------------RGRLHVMG 235 (434)
Q Consensus 174 ~~~~-~--~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p-~~r~~~~~~~~--------------~~~iyv~G 235 (434)
++.. + +.+++.|+.+ ..+..||..+..-.....+. ....-.+++.. ++++++.|
T Consensus 105 v~~sp~~~~~~l~sgs~d--------g~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sg 176 (753)
T 3jro_A 105 VQWAPHEYGPLLLVASSD--------GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 176 (753)
T ss_dssp EEECCGGGCSEEEEEETT--------SEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEE
T ss_pred EEECCCCCCCEEEEEeCC--------CcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEE
Confidence 3333 2 5677777643 35778887665211110000 00011111111 35666776
Q ss_pred CCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEE--C---CEEEEEcCCCCCCCCCCCCCcccccccc
Q 013909 236 GSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVF--N---DRLFVVGGQEGDFMAKPGSPIFKCSRRH 310 (434)
Q Consensus 236 G~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~--~---~~iyv~GG~~~~~~~~~~~~~~~~~~~~ 310 (434)
+.+ ..+.+|++. .....+.....+......-.++.+ + +++++.||.++.
T Consensus 177 s~d-----g~I~iwd~~-----~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~---------------- 230 (753)
T 3jro_A 177 GAD-----NLVKIWKYN-----SDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT---------------- 230 (753)
T ss_dssp ETT-----SCEEEEEEE-----TTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC----------------
T ss_pred ECC-----CeEEEEecc-----CCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE----------------
Confidence 654 356777764 333344443333221111122332 4 788999887654
Q ss_pred ceeeCcEEEeC-CCC--CeEE-cCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECC-CCceEEe
Q 013909 311 EVVYGDVYMLD-DEM--KWKV-LPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLD-SLTWSVI 385 (434)
Q Consensus 311 ~~~~~~v~~yd-~~~--~W~~-~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~-~~~W~~~ 385 (434)
+..|| ... .+.. +.................+++.++.||.++ .+.+||.. ...|...
T Consensus 231 ------I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg------------~I~vwd~~~~~~~~~~ 292 (753)
T 3jro_A 231 ------CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN------------KVTLWKENLEGKWEPA 292 (753)
T ss_dssp ------EEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSS------------CEECCBCCSSSCCBCC
T ss_pred ------EEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCC------------EEEEEecCCCCCcccc
Confidence 66666 332 2221 111111111111111334677888887653 57888877 4667766
Q ss_pred ccCC
Q 013909 386 GKLP 389 (434)
Q Consensus 386 ~~lp 389 (434)
..+.
T Consensus 293 ~~~~ 296 (753)
T 3jro_A 293 GEVH 296 (753)
T ss_dssp CCBC
T ss_pred cccc
Confidence 5443
No 46
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.61 E-value=0.1 Score=46.68 Aligned_cols=156 Identities=15% Similarity=0.072 Sum_probs=93.3
Q ss_pred eeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceE
Q 013909 170 SHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHW 249 (434)
Q Consensus 170 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 249 (434)
+-.++...++.||+..|..+ .+.++|+++.+-...- ++..-....++..+++||+....+ +.+.+|
T Consensus 56 ftqGL~~~~~~Ly~stG~~g--------~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~-----~~v~V~ 121 (268)
T 3nok_A 56 FTQGLVFHQGHFFESTGHQG--------TLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTE-----GLLFTW 121 (268)
T ss_dssp CEEEEEEETTEEEEEETTTT--------EEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSS-----CEEEEE
T ss_pred ccceEEEECCEEEEEcCCCC--------EEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccC-----CEEEEE
Confidence 34567778999999988532 3888999988753322 554445556778899999996543 344455
Q ss_pred EEEeeccccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCe-E
Q 013909 250 SIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKW-K 327 (434)
Q Consensus 250 ~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W-~ 327 (434)
| +.+.+ .+..++....+.+++.-++++|+.-|. +.++.+| .+.+- .
T Consensus 122 D-------~~Tl~--~~~ti~~~~eGwGLt~Dg~~L~vSdGs-----------------------~~l~~iDp~T~~v~~ 169 (268)
T 3nok_A 122 S-------GMPPQ--RERTTRYSGEGWGLCYWNGKLVRSDGG-----------------------TMLTFHEPDGFALVG 169 (268)
T ss_dssp E-------TTTTE--EEEEEECSSCCCCEEEETTEEEEECSS-----------------------SEEEEECTTTCCEEE
T ss_pred E-------CCcCc--EEEEEeCCCceeEEecCCCEEEEECCC-----------------------CEEEEEcCCCCeEEE
Confidence 5 44433 332222223344777778899998762 2489999 54432 2
Q ss_pred EcC--CCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEE
Q 013909 328 VLP--PMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSV 384 (434)
Q Consensus 328 ~~~--~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 384 (434)
.+. .-+.+..... .+...+++||+-- + ..+++.+.|+++.+=..
T Consensus 170 ~I~V~~~g~~v~~lN-eLe~~dG~lyanv-w-----------~s~~I~vIDp~TG~V~~ 215 (268)
T 3nok_A 170 AVQVKLRGQPVELIN-ELECANGVIYANI-W-----------HSSDVLEIDPATGTVVG 215 (268)
T ss_dssp EEECEETTEECCCEE-EEEEETTEEEEEE-T-----------TCSEEEEECTTTCBEEE
T ss_pred EEEeCCCCccccccc-ccEEeCCEEEEEE-C-----------CCCeEEEEeCCCCcEEE
Confidence 221 1222211111 2244588988522 1 12489999999987443
No 47
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=96.60 E-value=0.44 Score=46.27 Aligned_cols=60 Identities=12% Similarity=0.180 Sum_probs=39.5
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~ 207 (434)
++++|+|-|. ..|.||..+++...- ..+. .+. --++...++++|+|-| +..|+||+.++
T Consensus 158 ~~~~yfFkG~--------~yw~yd~~~~~~~~~-~w~g-i~~-iDAA~~~~g~~YfFkG----------~~y~rfd~~~~ 216 (460)
T 1qhu_A 158 DEGILFFQGN--------RKWFWDLTTGTKKER-SWPA-VGN-CTSALRWLGRYYCFQG----------NQFLRFNPVSG 216 (460)
T ss_dssp SSEEEEEETT--------EEEEEETTTTEEEEE-CCTT-SCC-CSEEEEETTEEEEEET----------TEEEEECTTTC
T ss_pred CCeEEEEecc--------cEEEEecccceeecc-cCCC-CCc-cchheeeCCceEEEEC----------CEEEEEcCccC
Confidence 6788999873 389999988765431 1111 122 2344445789999987 57788988765
Q ss_pred c
Q 013909 208 K 208 (434)
Q Consensus 208 ~ 208 (434)
+
T Consensus 217 ~ 217 (460)
T 1qhu_A 217 E 217 (460)
T ss_dssp C
T ss_pred c
Confidence 3
No 48
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.58 E-value=0.46 Score=49.79 Aligned_cols=237 Identities=11% Similarity=0.088 Sum_probs=122.6
Q ss_pred ceeeccCCCCcEEEcCCCC-C------CCCceeEEEE-CCE-EEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCC
Q 013909 98 TFADLPAPDLEWEQMPSAP-V------PRLDGAAIQI-KNL-FYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMA 168 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p-~------~R~~~~~~~~-~~~-iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~ 168 (434)
-+..+++.+++++.....+ . ...-.+++.- ++. |+|- ..+ .-+.+||+.++++..........+
T Consensus 378 Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWig-t~~------~Gl~~~d~~~~~~~~~~~~~~~l~ 450 (795)
T 4a2l_A 378 GLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIG-THA------GGLSILHRNSGQVENFNQRNSQLV 450 (795)
T ss_dssp CEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEE-ETT------TEEEEEETTTCCEEEECTTTSCCS
T ss_pred CeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEE-eCc------CceeEEeCCCCcEEEeecCCCCcC
Confidence 6778888888887764322 0 1112233332 556 7763 221 138899999998877643211111
Q ss_pred -ceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCC--CCC--ccc-ceEE-EECCEEEEEcCCCCC
Q 013909 169 -HSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL--PSP--RYS-PATQ-LWRGRLHVMGGSKEN 240 (434)
Q Consensus 169 -r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~--p~~--r~~-~~~~-~~~~~iyv~GG~~~~ 240 (434)
..-.+++.. ++.|++... .-+++||+.+.+|+..... +.. ... .+++ .-++.|++... .
T Consensus 451 ~~~v~~i~~d~~g~lwigt~----------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-- 517 (795)
T 4a2l_A 451 NENVYAILPDGEGNLWLGTL----------SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-- 517 (795)
T ss_dssp CSCEEEEEECSSSCEEEEES----------SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S--
T ss_pred CCeeEEEEECCCCCEEEEec----------CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C--
Confidence 122333333 567877432 3478999999999887533 111 111 1122 22567887643 2
Q ss_pred CCCCCcceEEEEeeccccccCceEEccC------CCCCCCceeEEE-ECCEEEEEcCCCCCCCCCCCCCcccccccccee
Q 013909 241 RHTPGLEHWSIAVKDGKALEKAWRTEIP------IPRGGPHRACFV-FNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVV 313 (434)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~W~~~~~------~p~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~ 313 (434)
-+.+|+ +.+.++ .... ++.... .++.. .++.|++-.. .
T Consensus 518 ----Gl~~~~-------~~~~~~-~~~~~~~~~~l~~~~i-~~i~~d~~g~lWigT~-~--------------------- 562 (795)
T 4a2l_A 518 ----GLSVFK-------QEGLDI-QKASILPVSNVTKLFT-NCIYEASNGIIWVGTR-E--------------------- 562 (795)
T ss_dssp ----CEEEEE-------EETTEE-EECCCSCSCGGGGSCE-EEEEECTTSCEEEEES-S---------------------
T ss_pred ----ceEEEe-------CCCCeE-EEecCCCCCCCCCCee-EEEEECCCCCEEEEeC-C---------------------
Confidence 234444 445555 3221 121111 12222 2677887543 2
Q ss_pred eCcEEEeC-CCCCeEEcC---CCCCCCCccceeEEE-ECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEecc-
Q 013909 314 YGDVYMLD-DEMKWKVLP---PMPKPNSHIECAWVI-VNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGK- 387 (434)
Q Consensus 314 ~~~v~~yd-~~~~W~~~~---~~p~~r~~~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~- 387 (434)
-+++|| .+.+++... .+|.. .. .+++. .+|.|++.+. +-+.+||+++.+++....
T Consensus 563 --Gl~~~d~~~~~~~~~~~~~gl~~~--~i-~~i~~d~~g~lWi~t~--------------~Gl~~~~~~~~~~~~~~~~ 623 (795)
T 4a2l_A 563 --GFYCFNEKDKQIKRYNTTNGLPNN--VV-YGILEDSFGRLWLSTN--------------RGISCFNPETEKFRNFTES 623 (795)
T ss_dssp --CEEEEETTTTEEEEECGGGTCSCS--CE-EEEEECTTSCEEEEET--------------TEEEEEETTTTEEEEECGG
T ss_pred --CceeECCCCCcEEEeCCCCCCchh--he-EEEEECCCCCEEEEcC--------------CceEEEcCCCCcEEEcCCc
Confidence 188898 666776653 23322 11 12222 2567877652 147899999999887643
Q ss_pred --CCCceee-eeeEEE-CCEEEEEc
Q 013909 388 --LPYRIKT-TLTGFW-DGWLYFTS 408 (434)
Q Consensus 388 --lp~~r~~-~~~~~~-~~~l~v~G 408 (434)
++..... .+++.. +++||+-+
T Consensus 624 dGl~~~~f~~~~~~~~~~G~l~~g~ 648 (795)
T 4a2l_A 624 DGLQSNQFNTASYCRTSVGQMYFGG 648 (795)
T ss_dssp GTCSCSCEEEEEEEECTTSCEEEEE
T ss_pred CCCccccCccCceeECCCCeEEEec
Confidence 5544432 233333 55666543
No 49
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=96.58 E-value=0.24 Score=45.83 Aligned_cols=189 Identities=12% Similarity=0.101 Sum_probs=87.0
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCc--eEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~ 205 (434)
++..++.||.++ .+.+||+.+.+ ......+..............+++ ++.|+.+ ..+..||+.
T Consensus 108 ~~~~l~s~~~d~------~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d--------~~i~~wd~~ 172 (340)
T 1got_B 108 SGNYVACGGLDN------ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGD--------TTCALWDIE 172 (340)
T ss_dssp TSSEEEEEETTC------EEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETT--------SCEEEEETT
T ss_pred CCCEEEEEeCCC------eEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECC--------CcEEEEECC
Confidence 566777777652 47788887653 111111111001111112233566 4444432 457889988
Q ss_pred CCceEecCCCCCCcccceEEE-ECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEE--C
Q 013909 206 TRKWDSIPPLPSPRYSPATQL-WRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVF--N 282 (434)
Q Consensus 206 t~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~--~ 282 (434)
+.+-...-.-.. ..-.+++. -++++++.|+.++ .+..|++ .+..- ...+......-.++.+ +
T Consensus 173 ~~~~~~~~~~h~-~~v~~~~~~~~~~~l~sg~~d~-----~v~~wd~-------~~~~~--~~~~~~h~~~v~~v~~~p~ 237 (340)
T 1got_B 173 TGQQTTTFTGHT-GDVMSLSLAPDTRLFVSGACDA-----SAKLWDV-------REGMC--RQTFTGHESDINAICFFPN 237 (340)
T ss_dssp TTEEEEEECCCS-SCEEEEEECTTSSEEEEEETTS-----CEEEEET-------TTCSE--EEEECCCSSCEEEEEECTT
T ss_pred CCcEEEEEcCCC-CceEEEEECCCCCEEEEEeCCC-----cEEEEEC-------CCCee--EEEEcCCcCCEEEEEEcCC
Confidence 775432211111 11112222 2566777776543 5666763 22221 1111111111122222 6
Q ss_pred CEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCC-eEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCC
Q 013909 283 DRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMK-WKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKH 360 (434)
Q Consensus 283 ~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~-W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~ 360 (434)
++.++.|+.++. +..|| ...+ -.... .+.............++++++.|+.++
T Consensus 238 ~~~l~s~s~d~~----------------------v~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~g~~d~-- 292 (340)
T 1got_B 238 GNAFATGSDDAT----------------------CRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDF-- 292 (340)
T ss_dssp SSEEEEEETTSC----------------------EEEEETTTTEEEEEEC-CTTCCSCEEEEEECTTSSEEEEEETTS--
T ss_pred CCEEEEEcCCCc----------------------EEEEECCCCcEEEEEc-cCCcccceEEEEECCCCCEEEEECCCC--
Confidence 778888887653 66777 4332 11111 111111112111234677888887542
Q ss_pred CCccceeeeccEEEEECCCCc
Q 013909 361 PMTKRMILVGEVFQFHLDSLT 381 (434)
Q Consensus 361 ~~~~~~~~~~~v~~yd~~~~~ 381 (434)
.+.+||..+..
T Consensus 293 ----------~i~vwd~~~~~ 303 (340)
T 1got_B 293 ----------NCNVWDALKAD 303 (340)
T ss_dssp ----------EEEEEETTTCC
T ss_pred ----------eEEEEEcccCc
Confidence 68889977654
No 50
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=96.57 E-value=0.036 Score=49.50 Aligned_cols=237 Identities=8% Similarity=-0.094 Sum_probs=114.0
Q ss_pred cceeeccCCCCcEEEcCCCCCCCCceeEEE-ECCEEEEEeccCCCCCceeeEEEEECCC-CceEecCCCCCCCCceeeEE
Q 013909 97 ATFADLPAPDLEWEQMPSAPVPRLDGAAIQ-IKNLFYVFAGYGSLDYVHSHVDVYNFTD-NKWVDRFDMPKDMAHSHLGV 174 (434)
Q Consensus 97 ~~~~~~~~~~~~W~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t-~~W~~~~~~~~~~~r~~~~~ 174 (434)
..++.+|..+++...+...+ ..-.++.. .+++.+++++. ..++++|+.+ .+...+...... ..-.++
T Consensus 22 ~~i~~~d~~~~~~~~~~~~~--~~v~~~~~spdg~~l~~~~~-------~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~ 90 (297)
T 2ojh_A 22 SSIEIFNIRTRKMRVVWQTP--ELFEAPNWSPDGKYLLLNSE-------GLLYRLSLAGDPSPEKVDTGFAT--ICNNDH 90 (297)
T ss_dssp EEEEEEETTTTEEEEEEEES--SCCEEEEECTTSSEEEEEET-------TEEEEEESSSCCSCEECCCTTCC--CBCSCC
T ss_pred eeEEEEeCCCCceeeeccCC--cceEeeEECCCCCEEEEEcC-------CeEEEEeCCCCCCceEecccccc--ccccce
Confidence 46777777777655443321 11122222 25666666541 2599999999 877666543321 111122
Q ss_pred EE-eCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEE-CC-EEEEEcCCCCCCCCCCcceEEE
Q 013909 175 VS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW-RG-RLHVMGGSKENRHTPGLEHWSI 251 (434)
Q Consensus 175 ~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~ 251 (434)
+. -+++.+++++.... ....++.+|..+.+-+.+..... ...++.. ++ .|++.++.+ ....+|++
T Consensus 91 ~~spdg~~l~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~spdg~~l~~~~~~~-----~~~~l~~~ 158 (297)
T 2ojh_A 91 GISPDGALYAISDKVEF----GKSAIYLLPSTGGTPRLMTKNLP---SYWHGWSPDGKSFTYCGIRD-----QVFDIYSM 158 (297)
T ss_dssp EECTTSSEEEEEECTTT----SSCEEEEEETTCCCCEECCSSSS---EEEEEECTTSSEEEEEEEET-----TEEEEEEE
T ss_pred EECCCCCEEEEEEeCCC----CcceEEEEECCCCceEEeecCCC---ccceEECCCCCEEEEEECCC-----CceEEEEE
Confidence 22 24555555543222 14689999988877665543322 1122222 34 455444432 22345554
Q ss_pred EeeccccccCceEEccCCCCCCCceeEEE-ECCEEEEEcC-CCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEE
Q 013909 252 AVKDGKALEKAWRTEIPIPRGGPHRACFV-FNDRLFVVGG-QEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKV 328 (434)
Q Consensus 252 ~~~~~~~~~~~W~~~~~~p~~~~~~~~~~-~~~~iyv~GG-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~ 328 (434)
+ ..+.....+...+.... .+.. .+++.+++.+ .++. ..+|.++ .......
T Consensus 159 ~-----~~~~~~~~~~~~~~~~~--~~~~s~dg~~l~~~~~~~~~--------------------~~i~~~~~~~~~~~~ 211 (297)
T 2ojh_A 159 D-----IDSGVETRLTHGEGRND--GPDYSPDGRWIYFNSSRTGQ--------------------MQIWRVRVDGSSVER 211 (297)
T ss_dssp E-----TTTCCEEECCCSSSCEE--EEEECTTSSEEEEEECTTSS--------------------CEEEEEETTSSCEEE
T ss_pred E-----CCCCcceEcccCCCccc--cceECCCCCEEEEEecCCCC--------------------ccEEEECCCCCCcEE
Confidence 3 44444444433222111 2222 2555444443 3322 2478887 5556666
Q ss_pred cCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEecc
Q 013909 329 LPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGK 387 (434)
Q Consensus 329 ~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 387 (434)
+.... ..........+++.+++++.+...... .......++++|+++.+...+..
T Consensus 212 ~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~~~~-~~~~~~~l~~~d~~~~~~~~~~~ 266 (297)
T 2ojh_A 212 ITDSA---YGDWFPHPSPSGDKVVFVSYDADVFDH-PRDLDVRVQLMDMDGGNVETLFD 266 (297)
T ss_dssp CCCCS---EEEEEEEECTTSSEEEEEEEETTCCSC-CSSEEEEEEEEETTSCSCEEEEE
T ss_pred EecCC---cccCCeEECCCCCEEEEEEcCCCCCcc-cccCceEEEEEecCCCCceeeec
Confidence 54322 111111122366666666544321100 00012469999999988766543
No 51
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.56 E-value=0.48 Score=43.82 Aligned_cols=244 Identities=10% Similarity=0.060 Sum_probs=119.5
Q ss_pred eeeccCCCCcEEEcCCC-CCCCC-ceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEE-
Q 013909 99 FADLPAPDLEWEQMPSA-PVPRL-DGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV- 175 (434)
Q Consensus 99 ~~~~~~~~~~W~~~~~~-p~~R~-~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~- 175 (434)
++...-...+|+.+... +.+.. ..++...++.+|+.|-. + .+++-+-.-.+|+.+..... .+-....++
T Consensus 58 i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~-g------~i~~S~DgG~tW~~~~~~~~-~~~~~~~i~~ 129 (327)
T 2xbg_A 58 LMETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEP-P------IMLHTTDGGQSWSQIPLDPK-LPGSPRLIKA 129 (327)
T ss_dssp EEEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEET-T------EEEEESSTTSSCEECCCCTT-CSSCEEEEEE
T ss_pred EEEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECC-C------eEEEECCCCCCceECccccC-CCCCeEEEEE
Confidence 44444445689998642 22232 33444457788887532 1 24443333568998764321 111123333
Q ss_pred EeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEE-CCEEEEEcCCCCCCCCCCcceEEEEee
Q 013909 176 SDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW-RGRLHVMGGSKENRHTPGLEHWSIAVK 254 (434)
Q Consensus 176 ~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~ 254 (434)
.-++.+|+.|.. ..+++-+-.-.+|+.+.... +...+.++.. ++++|++|- .+ ..|...
T Consensus 130 ~~~~~~~~~~~~---------g~v~~S~DgG~tW~~~~~~~-~~~~~~~~~~~~~~~~~~g~-~G-------~~~~S~-- 189 (327)
T 2xbg_A 130 LGNGSAEMITNV---------GAIYRTKDSGKNWQALVQEA-IGVMRNLNRSPSGEYVAVSS-RG-------SFYSTW-- 189 (327)
T ss_dssp EETTEEEEEETT---------CCEEEESSTTSSEEEEECSC-CCCEEEEEECTTSCEEEEET-TS-------SEEEEE--
T ss_pred ECCCCEEEEeCC---------ccEEEEcCCCCCCEEeecCC-CcceEEEEEcCCCcEEEEEC-CC-------cEEEEe--
Confidence 356888887741 13444333356799885422 2223334333 456666652 11 233321
Q ss_pred ccccccCceEEccCCCCCCCceeEEE-ECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEe-C-CCCCeEEcCC
Q 013909 255 DGKALEKAWRTEIPIPRGGPHRACFV-FNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYML-D-DEMKWKVLPP 331 (434)
Q Consensus 255 ~~~~~~~~W~~~~~~p~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y-d-~~~~W~~~~~ 331 (434)
|....+|+.+.... ...-+.++. -++.+|+.+.. + .++.. + ...+|+.+..
T Consensus 190 --d~gG~tW~~~~~~~-~~~~~~~~~~~~g~~~~~~~~-G----------------------~~~~s~~D~G~tW~~~~~ 243 (327)
T 2xbg_A 190 --EPGQTAWEPHNRTT-SRRLHNMGFTPDGRLWMIVNG-G----------------------KIAFSDPDNSENWGELLS 243 (327)
T ss_dssp --CTTCSSCEEEECCS-SSCEEEEEECTTSCEEEEETT-T----------------------EEEEEETTEEEEECCCBC
T ss_pred --CCCCCceeECCCCC-CCccceeEECCCCCEEEEeCC-c----------------------eEEEecCCCCCeeEeccC
Confidence 01247898874322 222223332 36788877642 1 14554 2 3568988753
Q ss_pred CCCCCCccceeEEEE-CCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEecc-CCCceeeeeeEE-ECCEEEEEc
Q 013909 332 MPKPNSHIECAWVIV-NNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGK-LPYRIKTTLTGF-WDGWLYFTS 408 (434)
Q Consensus 332 ~p~~r~~~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~-lp~~r~~~~~~~-~~~~l~v~G 408 (434)
.+.+....-.+++.. ++.+|+.|+.. .+++-.-...+|+.+.. .+.+...+.++. -+++++++|
T Consensus 244 ~~~~~~~~~~~v~~~~~~~~~~~g~~g-------------~i~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G 310 (327)
T 2xbg_A 244 PLRRNSVGFLDLAYRTPNEVWLAGGAG-------------ALLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILG 310 (327)
T ss_dssp TTSSCCSCEEEEEESSSSCEEEEESTT-------------CEEEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEEC
T ss_pred CcccCCcceEEEEecCCCEEEEEeCCC-------------eEEEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEc
Confidence 212221111122222 67888887621 34443345689998753 222222233333 366777665
Q ss_pred c
Q 013909 409 G 409 (434)
Q Consensus 409 G 409 (434)
.
T Consensus 311 ~ 311 (327)
T 2xbg_A 311 Q 311 (327)
T ss_dssp S
T ss_pred C
Confidence 4
No 52
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=96.55 E-value=0.17 Score=44.76 Aligned_cols=214 Identities=14% Similarity=0.036 Sum_probs=98.7
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
++++|+.+... ...+.+||+.+........... ..-.++++. +++||+... ...+.+||+.+
T Consensus 34 ~g~l~v~~~~~-----~~~i~~~~~~~~~~~~~~~~~~---~~p~~i~~~~~g~l~v~~~---------~~~i~~~d~~~ 96 (270)
T 1rwi_B 34 AGNVYVTSEGM-----YGRVVKLATGSTGTTVLPFNGL---YQPQGLAVDGAGTVYVTDF---------NNRVVTLAAGS 96 (270)
T ss_dssp TCCEEEEECSS-----SCEEEEECC-----EECCCCSC---CSCCCEEECTTCCEEEEET---------TTEEEEECTTC
T ss_pred CCCEEEEccCC-----CCcEEEecCCCcccceEeeCCc---CCcceeEECCCCCEEEEcC---------CCEEEEEeCCC
Confidence 56788833221 1348889988776554432211 112344544 567888754 14688999988
Q ss_pred CceEecCCCCCCcccceEEEE-CCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEE-CCE
Q 013909 207 RKWDSIPPLPSPRYSPATQLW-RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVF-NDR 284 (434)
Q Consensus 207 ~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~-~~~ 284 (434)
........... ..-..++.. ++++|+..... ..+..|+ +.+........... .....++.. +++
T Consensus 97 ~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~~~-----~~i~~~~-------~~~~~~~~~~~~~~-~~p~~i~~~~~g~ 162 (270)
T 1rwi_B 97 NNQTVLPFDGL-NYPEGLAVDTQGAVYVADRGN-----NRVVKLA-------AGSKTQTVLPFTGL-NDPDGVAVDNSGN 162 (270)
T ss_dssp SCCEECCCCSC-SSEEEEEECTTCCEEEEEGGG-----TEEEEEC-------TTCCSCEECCCCSC-CSCCCEEECTTCC
T ss_pred ceEeeeecCCc-CCCcceEECCCCCEEEEECCC-----CEEEEEE-------CCCceeEeeccccC-CCceeEEEeCCCC
Confidence 76554432111 111223332 57788875321 1222222 33333222111110 111133333 678
Q ss_pred EEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEEE-CCEEEEEcCcCCCCCC
Q 013909 285 LFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIV-NNSIIITGGTTEKHPM 362 (434)
Q Consensus 285 iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~-~~~i~v~GG~~~~~~~ 362 (434)
+|+..... +.++.|| ....-........ ... .++++. ++.||+....+
T Consensus 163 l~v~~~~~----------------------~~i~~~~~~~~~~~~~~~~~~--~~p-~~i~~d~~g~l~v~~~~~----- 212 (270)
T 1rwi_B 163 VYVTDTDN----------------------NRVVKLEAESNNQVVLPFTDI--TAP-WGIAVDEAGTVYVTEHNT----- 212 (270)
T ss_dssp EEEEEGGG----------------------TEEEEECTTTCCEEECCCSSC--CSE-EEEEECTTCCEEEEETTT-----
T ss_pred EEEEECCC----------------------CEEEEEecCCCceEeecccCC--CCc-eEEEECCCCCEEEEECCC-----
Confidence 88876432 2488998 4443333221111 111 123333 45888865422
Q ss_pred ccceeeeccEEEEECCCCceEEeccCCCceeeeeeEE-ECCEEEEEccc
Q 013909 363 TKRMILVGEVFQFHLDSLTWSVIGKLPYRIKTTLTGF-WDGWLYFTSGQ 410 (434)
Q Consensus 363 ~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~~~~l~v~GG~ 410 (434)
+.+.+||+.+..-..... .....-.+++. -+++||+....
T Consensus 213 -------~~v~~~~~~~~~~~~~~~-~~~~~p~~i~~~~~g~l~v~~~~ 253 (270)
T 1rwi_B 213 -------NQVVKLLAGSTTSTVLPF-TGLNTPLAVAVDSDRTVYVADRG 253 (270)
T ss_dssp -------SCEEEECTTCSCCEECCC-CSCSCEEEEEECTTCCEEEEEGG
T ss_pred -------CcEEEEcCCCCcceeecc-CCCCCceeEEECCCCCEEEEECC
Confidence 258899987765433221 11111223333 35688887553
No 53
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.54 E-value=0.2 Score=46.06 Aligned_cols=70 Identities=9% Similarity=0.014 Sum_probs=39.3
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEE--eCCEEEEEeccCCCCCCCCCceeEEEECC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS--DGRYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~yd~~ 205 (434)
++.+|+.............++++|+.+.+-...-+... + .+++++ .++.+|+.+.. ...++.+|+.
T Consensus 52 g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~-~~~~~~s~dg~~l~v~~~~--------~~~v~~~d~~ 119 (353)
T 3vgz_A 52 ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL---K-PFGATINNTTQTLWFGNTV--------NSAVTAIDAK 119 (353)
T ss_dssp TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS---C-CCSEEEETTTTEEEEEETT--------TTEEEEEETT
T ss_pred CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC---C-cceEEECCCCCEEEEEecC--------CCEEEEEeCC
Confidence 34677765332211123569999999876433222221 1 122333 34568887652 2478999998
Q ss_pred CCce
Q 013909 206 TRKW 209 (434)
Q Consensus 206 t~~W 209 (434)
+.+-
T Consensus 120 ~~~~ 123 (353)
T 3vgz_A 120 TGEV 123 (353)
T ss_dssp TCCE
T ss_pred CCee
Confidence 8774
No 54
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.52 E-value=0.043 Score=52.94 Aligned_cols=164 Identities=15% Similarity=0.093 Sum_probs=78.1
Q ss_pred cceeeccCCCCcEEEcCCCCCCCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCceEec-CCCCCCCCceeeEEE
Q 013909 97 ATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDR-FDMPKDMAHSHLGVV 175 (434)
Q Consensus 97 ~~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~-~~~~~~~~r~~~~~~ 175 (434)
..+..+|..+++-.. .+.........+...+..++.|+.++ .+.+||..+.+-... ..+.. ....-.++.
T Consensus 193 g~i~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~l~s~s~dg------~i~vwd~~~~~~~~~~~~~~~-~~~~v~~~~ 263 (435)
T 1p22_A 193 STVRVWDVNTGEMLN--TLIHHCEAVLHLRFNNGMMVTCSKDR------SIAVWDMASPTDITLRRVLVG-HRAAVNVVD 263 (435)
T ss_dssp SCEEEEESSSCCEEE--EECCCCSCEEEEECCTTEEEEEETTS------CEEEEECSSSSCCEEEEEECC-CSSCEEEEE
T ss_pred CeEEEEECCCCcEEE--EEcCCCCcEEEEEEcCCEEEEeeCCC------cEEEEeCCCCCCceeeeEecC-CCCcEEEEE
Confidence 356666666654322 12222222333334556777777543 378888877642110 11111 011122333
Q ss_pred EeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeec
Q 013909 176 SDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKD 255 (434)
Q Consensus 176 ~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~ 255 (434)
. ++..++.|+.+ ..+..||..+.+-... +.........+..++++++.|+.+ ..+.+|++
T Consensus 264 ~-~~~~l~s~~~d--------g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~g~~d-----g~i~iwd~---- 323 (435)
T 1p22_A 264 F-DDKYIVSASGD--------RTIKVWNTSTCEFVRT--LNGHKRGIACLQYRDRLVVSGSSD-----NTIRLWDI---- 323 (435)
T ss_dssp E-ETTEEEEEETT--------SEEEEEETTTCCEEEE--EECCSSCEEEEEEETTEEEEEETT-----SCEEEEET----
T ss_pred e-CCCEEEEEeCC--------CeEEEEECCcCcEEEE--EcCCCCcEEEEEeCCCEEEEEeCC-----CeEEEEEC----
Confidence 3 44455555532 4678899887653222 111111223334466677777654 34666763
Q ss_pred cccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCC
Q 013909 256 GKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGD 294 (434)
Q Consensus 256 ~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~ 294 (434)
.+.+ .+..+........++.++++.++.|+.++.
T Consensus 324 ---~~~~--~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~ 357 (435)
T 1p22_A 324 ---ECGA--CLRVLEGHEELVRCIRFDNKRIVSGAYDGK 357 (435)
T ss_dssp ---TTCC--EEEEECCCSSCEEEEECCSSEEEEEETTSC
T ss_pred ---CCCC--EEEEEeCCcCcEEEEEecCCEEEEEeCCCc
Confidence 2222 222222111222444558888888887654
No 55
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=96.49 E-value=0.06 Score=49.20 Aligned_cols=215 Identities=9% Similarity=0.008 Sum_probs=101.8
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
+++.++.|+.+ ..+.+||+.+.+......+... ...-.+++.. +++.++.|+.+ ..+..||..+
T Consensus 108 ~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d--------g~v~~~d~~~ 172 (337)
T 1gxr_A 108 DGCTLIVGGEA------STLSIWDLAAPTPRIKAELTSS-APACYALAISPDSKVCFSCCSD--------GNIAVWDLHN 172 (337)
T ss_dssp TSSEEEEEESS------SEEEEEECCCC--EEEEEEECS-SSCEEEEEECTTSSEEEEEETT--------SCEEEEETTT
T ss_pred CCCEEEEEcCC------CcEEEEECCCCCcceeeecccC-CCceEEEEECCCCCEEEEEeCC--------CcEEEEeCCC
Confidence 55666777654 2488899998875443322221 1112233333 55566666643 3578899887
Q ss_pred CceEecCCCCCCcccceEEE-ECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEE-ECCE
Q 013909 207 RKWDSIPPLPSPRYSPATQL-WRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFV-FNDR 284 (434)
Q Consensus 207 ~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~-~~~~ 284 (434)
.+....-...... -.+++. -+++.++.|+.++ .+..|++ .+.+-......+... .+++. .+++
T Consensus 173 ~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~dg-----~i~~~d~-------~~~~~~~~~~~~~~v--~~~~~s~~~~ 237 (337)
T 1gxr_A 173 QTLVRQFQGHTDG-ASCIDISNDGTKLWTGGLDN-----TVRSWDL-------REGRQLQQHDFTSQI--FSLGYCPTGE 237 (337)
T ss_dssp TEEEEEECCCSSC-EEEEEECTTSSEEEEEETTS-----EEEEEET-------TTTEEEEEEECSSCE--EEEEECTTSS
T ss_pred CceeeeeecccCc-eEEEEECCCCCEEEEEecCC-----cEEEEEC-------CCCceEeeecCCCce--EEEEECCCCC
Confidence 7643321111111 112222 2555666665432 3555552 222211111111111 12222 2677
Q ss_pred EEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCc
Q 013909 285 LFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMT 363 (434)
Q Consensus 285 iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~ 363 (434)
++++|+.++. +..|| ...+-..+..... .........++++++.|+.+
T Consensus 238 ~l~~~~~~~~----------------------i~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d------ 286 (337)
T 1gxr_A 238 WLAVGMESSN----------------------VEVLHVNKPDKYQLHLHES---CVLSLKFAYCGKWFVSTGKD------ 286 (337)
T ss_dssp EEEEEETTSC----------------------EEEEETTSSCEEEECCCSS---CEEEEEECTTSSEEEEEETT------
T ss_pred EEEEEcCCCc----------------------EEEEECCCCCeEEEcCCcc---ceeEEEECCCCCEEEEecCC------
Confidence 7778876543 77787 4443223322211 11111123356777777754
Q ss_pred cceeeeccEEEEECCCCceEEeccCCCceeeeeeE-EECCEEEEEcccc
Q 013909 364 KRMILVGEVFQFHLDSLTWSVIGKLPYRIKTTLTG-FWDGWLYFTSGQR 411 (434)
Q Consensus 364 ~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~l~v~GG~~ 411 (434)
..+.+||+++.+-..... ....-..++ ..+++.++.|+.+
T Consensus 287 ------g~i~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d 327 (337)
T 1gxr_A 287 ------NLLNAWRTPYGASIFQSK--ESSSVLSCDISVDDKYIVTGSGD 327 (337)
T ss_dssp ------SEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSCEEEEEETT
T ss_pred ------CcEEEEECCCCeEEEEec--CCCcEEEEEECCCCCEEEEecCC
Confidence 268899988877543211 111112222 2356777776643
No 56
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.49 E-value=0.061 Score=48.12 Aligned_cols=103 Identities=14% Similarity=0.102 Sum_probs=69.6
Q ss_pred CCCCCCc--eeEEEECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCC
Q 013909 115 APVPRLD--GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQC 192 (434)
Q Consensus 115 ~p~~R~~--~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~ 192 (434)
.|..+.. .++...++.||+..|..+. +.++|+++++=..-- ++. ...+.+++..+++||+....
T Consensus 49 ~phd~~~ftqGL~~~~~~Ly~stG~~g~------v~~iD~~Tgkv~~~~-l~~--~~FgeGit~~g~~Ly~ltw~----- 114 (268)
T 3nok_A 49 YPHATNAFTQGLVFHQGHFFESTGHQGT------LRQLSLESAQPVWME-RLG--NIFAEGLASDGERLYQLTWT----- 114 (268)
T ss_dssp EECCTTCCEEEEEEETTEEEEEETTTTE------EEECCSSCSSCSEEE-ECT--TCCEEEEEECSSCEEEEESS-----
T ss_pred EcCCCccccceEEEECCEEEEEcCCCCE------EEEEECCCCcEEeEE-CCC--CcceeEEEEeCCEEEEEEcc-----
Confidence 3444433 4556668999999987532 889999998743322 443 34566788899999998542
Q ss_pred CCCCceeEEEECCCCceEecCCCCCCcccceEEEECCEEEEEcC
Q 013909 193 RGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGG 236 (434)
Q Consensus 193 ~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG 236 (434)
.+.+++||+++.+-..- .+.+-.+..++.-++++|+.-|
T Consensus 115 ---~~~v~V~D~~Tl~~~~t--i~~~~eGwGLt~Dg~~L~vSdG 153 (268)
T 3nok_A 115 ---EGLLFTWSGMPPQRERT--TRYSGEGWGLCYWNGKLVRSDG 153 (268)
T ss_dssp ---SCEEEEEETTTTEEEEE--EECSSCCCCEEEETTEEEEECS
T ss_pred ---CCEEEEEECCcCcEEEE--EeCCCceeEEecCCCEEEEECC
Confidence 36899999988764322 2223345677777889999865
No 57
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=96.46 E-value=0.45 Score=42.46 Aligned_cols=119 Identities=11% Similarity=0.104 Sum_probs=61.5
Q ss_pred cceeeccCCCCcEEEcCCCCCCCCceeEEEE-CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEE
Q 013909 97 ATFADLPAPDLEWEQMPSAPVPRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV 175 (434)
Q Consensus 97 ~~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~ 175 (434)
..+..+|+. +++...........-+.++.. ++.+|+..... ..+.+||+. .+..... ++.. ...-.+++
T Consensus 83 ~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~------~~i~~~~~~-g~~~~~~-~~~~-~~~~~~i~ 152 (300)
T 2qc5_A 83 NKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNG------DRIGKLTAD-GTIYEYD-LPNK-GSYPAFIT 152 (300)
T ss_dssp TEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTT------TEEEEECTT-SCEEEEE-CSST-TCCEEEEE
T ss_pred CeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCC------CeEEEECCC-CCEEEcc-CCCC-CCCceeEE
Confidence 367888877 666543221111222333333 57888875321 248889988 6655432 2211 12234444
Q ss_pred Ee-CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccc-eEEEE-CCEEEEEc
Q 013909 176 SD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSP-ATQLW-RGRLHVMG 235 (434)
Q Consensus 176 ~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~G 235 (434)
+. +++||+.... ...+++||+ +.+..... ++...... .++.. +++||+..
T Consensus 153 ~d~~g~l~v~~~~--------~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~ 205 (300)
T 2qc5_A 153 LGSDNALWFTENQ--------NNSIGRITN-TGKLEEYP-LPTNAAAPVGITSGNDGALWFVE 205 (300)
T ss_dssp ECTTSSEEEEETT--------TTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECTTSSEEEEE
T ss_pred ECCCCCEEEEecC--------CCeEEEECC-CCcEEEee-CCCCCCCcceEEECCCCCEEEEc
Confidence 43 5678886421 256889998 66665542 22211122 22222 56788874
No 58
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.44 E-value=0.22 Score=46.12 Aligned_cols=149 Identities=6% Similarity=-0.011 Sum_probs=68.8
Q ss_pred HHHHhcCCCCCCcCcceeeeeecccccCCceEEecCCCCCccccceeeeEEEccCCcchhhhhccceeeccCCCCcEEEc
Q 013909 33 DFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQM 112 (434)
Q Consensus 33 ~~l~~~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 112 (434)
+.++++|+. ++ .+..||+.+..+..+..+.... .....+.....+..-........+..+|..+.++...
T Consensus 20 ~~~l~~~~~-d~-------~v~i~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 89 (372)
T 1k8k_C 20 RTQIAICPN-NH-------EVHIYEKSGNKWVQVHELKEHN--GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT 89 (372)
T ss_dssp SSEEEEECS-SS-------EEEEEEEETTEEEEEEEEECCS--SCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE
T ss_pred CCEEEEEeC-CC-------EEEEEeCCCCcEEeeeeecCCC--CcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeee
Confidence 345556665 56 7888998888665544432211 1122222222221111111233566677767665544
Q ss_pred CCCCCCCCceeEEEE--CCEEEEEeccCCCCCceeeEEEEECCCCc-eEecCCCCCCCCceeeEEEEe-CCEEEEEeccC
Q 013909 113 PSAPVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNK-WVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQY 188 (434)
Q Consensus 113 ~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~ 188 (434)
..+.........+.. ++..++.|+.++ .+.+||..+.+ |........+....-.+++.. ++.+++.|+.+
T Consensus 90 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 163 (372)
T 1k8k_C 90 LVILRINRAARCVRWAPNEKKFAVGSGSR------VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD 163 (372)
T ss_dssp EECCCCSSCEEEEEECTTSSEEEEEETTS------SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred EEeecCCCceeEEEECCCCCEEEEEeCCC------EEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC
Confidence 332222222222223 566777776542 25556665543 322222111111222333333 55667777643
Q ss_pred CCCCCCCCceeEEEECC
Q 013909 189 GPQCRGPTSRTFVLDSE 205 (434)
Q Consensus 189 ~~~~~~~~~~~~~yd~~ 205 (434)
..+..||..
T Consensus 164 --------g~i~~~d~~ 172 (372)
T 1k8k_C 164 --------FKCRIFSAY 172 (372)
T ss_dssp --------SCEEEEECC
T ss_pred --------CCEEEEEcc
Confidence 356778854
No 59
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=96.43 E-value=0.014 Score=55.02 Aligned_cols=96 Identities=13% Similarity=0.176 Sum_probs=47.0
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
++++++.|+.++ .+.+||+.++.|..+..+.... ..-.+++.. ++++++.|+.+ ..+.+||..+
T Consensus 22 ~g~~l~~~~~d~------~i~iw~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~s~d--------~~v~vwd~~~ 86 (377)
T 3dwl_C 22 QRTEFVTTTATN------QVELYEQDGNGWKHARTFSDHD-KIVTCVDWAPKSNRIVTCSQD--------RNAYVYEKRP 86 (377)
T ss_dssp SSSEEECCCSSS------CBCEEEEETTEEEECCCBCCCS-SCEEEEEECTTTCCEEEEETT--------SSEEEC----
T ss_pred CCCEEEEecCCC------EEEEEEccCCceEEEEEEecCC-ceEEEEEEeCCCCEEEEEeCC--------CeEEEEEcCC
Confidence 566677776542 3677888888888776665311 222333333 45667777643 3577788877
Q ss_pred Cc-eEecCCCCCCcccceEEEE--CCEEEEEcCCC
Q 013909 207 RK-WDSIPPLPSPRYSPATQLW--RGRLHVMGGSK 238 (434)
Q Consensus 207 ~~-W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 238 (434)
.+ |.....+.........+.+ ++++++.|+.+
T Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 121 (377)
T 3dwl_C 87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGA 121 (377)
T ss_dssp --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESS
T ss_pred CCceeeeeEecccCCceEEEEECCCCCEEEEEecC
Confidence 66 4333222211111122222 45666666654
No 60
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=96.33 E-value=0.051 Score=52.06 Aligned_cols=160 Identities=7% Similarity=-0.019 Sum_probs=72.1
Q ss_pred HHHHHhcCCCCCCcCcceeeeeecccccCCceEEecCCCCC-ccccceeeeEEEccCCcchhhhhccceeeccCCCCcEE
Q 013909 32 ADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNAT-KIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWE 110 (434)
Q Consensus 32 ~~~l~~~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-r~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~W~ 110 (434)
++.+++.++. ++ .+..||+.+.......+.... .+.....++.....+..-........+..+|..+.+..
T Consensus 133 ~~~~~~~~~~-~~-------~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~ 204 (433)
T 3bws_A 133 NTRLAIPLLE-DE-------GMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYK 204 (433)
T ss_dssp SSEEEEEBTT-SS-------SEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEE
T ss_pred CCeEEEEeCC-CC-------eEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEE
Confidence 3455555554 44 578888887766553322110 11111111221111111011112346777777665432
Q ss_pred EcCCCCCCCCceeEEEE--CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEecc
Q 013909 111 QMPSAPVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQ 187 (434)
Q Consensus 111 ~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~ 187 (434)
..-... ...-..++.. +..+|+.++.+ ..+.+||+.+.+....-+.. ..-.+++.. +++.+++++.
T Consensus 205 ~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~------~~i~~~d~~~~~~~~~~~~~----~~~~~~~~~~~g~~l~~~~~ 273 (433)
T 3bws_A 205 ATVDLT-GKWSKILLYDPIRDLVYCSNWIS------EDISVIDRKTKLEIRKTDKI----GLPRGLLLSKDGKELYIAQF 273 (433)
T ss_dssp EEEECS-SSSEEEEEEETTTTEEEEEETTT------TEEEEEETTTTEEEEECCCC----SEEEEEEECTTSSEEEEEEE
T ss_pred EEEcCC-CCCeeEEEEcCCCCEEEEEecCC------CcEEEEECCCCcEEEEecCC----CCceEEEEcCCCCEEEEEEC
Confidence 211111 1111223333 44677776543 24899999988764432222 123344443 4434444443
Q ss_pred CCCCCCCCCceeEEEECCCCceE
Q 013909 188 YGPQCRGPTSRTFVLDSETRKWD 210 (434)
Q Consensus 188 ~~~~~~~~~~~~~~yd~~t~~W~ 210 (434)
...........+.+||+.+.+-.
T Consensus 274 ~~~~~~~~dg~i~~~d~~~~~~~ 296 (433)
T 3bws_A 274 SASNQESGGGRLGIYSMDKEKLI 296 (433)
T ss_dssp ESCTTCSCCEEEEEEETTTTEEE
T ss_pred CCCccccCCCeEEEEECCCCcEE
Confidence 22211011357899999887543
No 61
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.1 Score=48.18 Aligned_cols=106 Identities=8% Similarity=0.010 Sum_probs=53.1
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
++++++.|+.++ .+.+||..+.+-...-.... ..-.+++.. +++.++.|+.+ ..+.+||..+
T Consensus 43 ~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~ 105 (369)
T 3zwl_B 43 EGDLLFSCSKDS------SASVWYSLNGERLGTLDGHT---GTIWSIDVDCFTKYCVTGSAD--------YSIKLWDVSN 105 (369)
T ss_dssp TSCEEEEEESSS------CEEEEETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETT--------TEEEEEETTT
T ss_pred CCCEEEEEeCCC------EEEEEeCCCchhhhhhhhcC---CcEEEEEEcCCCCEEEEEeCC--------CeEEEEECCC
Confidence 556777776543 37888988766432211111 112233333 45566666642 4688899887
Q ss_pred CceEecCCCCCCcccceEE-EECCEEEEEcCCCCCCCCCCcceEEEE
Q 013909 207 RKWDSIPPLPSPRYSPATQ-LWRGRLHVMGGSKENRHTPGLEHWSIA 252 (434)
Q Consensus 207 ~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~ 252 (434)
.+....-..+.+ -.+++ .-+++.++.++.+.......+..|++.
T Consensus 106 ~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~ 150 (369)
T 3zwl_B 106 GQCVATWKSPVP--VKRVEFSPCGNYFLAILDNVMKNPGSINIYEIE 150 (369)
T ss_dssp CCEEEEEECSSC--EEEEEECTTSSEEEEEECCBTTBCCEEEEEEEE
T ss_pred CcEEEEeecCCC--eEEEEEccCCCEEEEecCCccCCCCEEEEEEec
Confidence 765433222211 11122 224555555554322223456677754
No 62
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.28 E-value=0.14 Score=48.56 Aligned_cols=134 Identities=5% Similarity=-0.053 Sum_probs=63.3
Q ss_pred eeecccccCCceEEecCCCCCccccceeeeEEEccCCcchhhhhccceeeccCCCCcEEEcCCCCCCCCceeEEEECCEE
Q 013909 52 VASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLF 131 (434)
Q Consensus 52 ~~~~yd~~~~~W~~~~~~~~~r~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~~~~i 131 (434)
.+..||..++............ ....+.....+..-.....+..+..+|..+.+-... +.........+..++.+
T Consensus 114 ~v~lw~~~~~~~~~~~~~~~~~---~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~ 188 (401)
T 4aez_A 114 NVYVWNADSGSVSALAETDEST---YVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRT--MAGHQARVGCLSWNRHV 188 (401)
T ss_dssp EEEEEETTTCCEEEEEECCTTC---CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE--ECCCSSCEEEEEEETTE
T ss_pred eEEEeeCCCCcEeEeeecCCCC---CEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEE--ecCCCCceEEEEECCCE
Confidence 6788888877765543322111 111222211111111111233566667666543221 12222223333446667
Q ss_pred EEEeccCCCCCceeeEEEEECCCCce--EecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCCCc
Q 013909 132 YVFAGYGSLDYVHSHVDVYNFTDNKW--VDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRK 208 (434)
Q Consensus 132 yv~GG~~~~~~~~~~v~~yd~~t~~W--~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~ 208 (434)
++.|+.++ .+.+||..+..- ..+.... ..-.+++.. ++.+++.|+.+ ..+.+||..+.+
T Consensus 189 l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~s~~~d--------~~v~iwd~~~~~ 250 (401)
T 4aez_A 189 LSSGSRSG------AIHHHDVRIANHQIGTLQGHS----SEVCGLAWRSDGLQLASGGND--------NVVQIWDARSSI 250 (401)
T ss_dssp EEEEETTS------EEEEEETTSSSCEEEEEECCS----SCEEEEEECTTSSEEEEEETT--------SCEEEEETTCSS
T ss_pred EEEEcCCC------CEEEEecccCcceeeEEcCCC----CCeeEEEEcCCCCEEEEEeCC--------CeEEEccCCCCC
Confidence 77777542 488889874331 1111111 112233333 56677777743 357889988754
No 63
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=96.22 E-value=0.17 Score=46.59 Aligned_cols=190 Identities=11% Similarity=0.041 Sum_probs=86.1
Q ss_pred CEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCCC
Q 013909 129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (434)
Q Consensus 129 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~ 207 (434)
+.+++.|+.++. +.++|..+.+......+..- ...-.++... ++.+.+.|+.+ ..+..+|..+.
T Consensus 48 ~~~l~tgs~D~~------v~vW~~~~~~~~~~~~l~gh-~~~v~~~~~~~~~~~l~s~s~D--------~~i~lWd~~~~ 112 (321)
T 3ow8_A 48 SETVVTGSLDDL------VKVWKWRDERLDLQWSLEGH-QLGVVSVDISHTLPIAASSSLD--------AHIRLWDLENG 112 (321)
T ss_dssp -CEEEEEETTSC------EEEEEEETTEEEEEEEECCC-SSCEEEEEECSSSSEEEEEETT--------SEEEEEETTTT
T ss_pred CCEEEEEcCCCC------EEEEECCCCCeeeeeeeccC-CCCEEEEEECCCCCEEEEEeCC--------CcEEEEECCCC
Confidence 457777876642 45555555443222111110 1111222322 44566666643 46778888876
Q ss_pred ceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEE-ECCEEE
Q 013909 208 KWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFV-FNDRLF 286 (434)
Q Consensus 208 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~-~~~~iy 286 (434)
+-...-..........+..-+++.++.|+.++ .+.+|++ .+.+-....... ...-.+++. .+++.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg-----~v~i~~~-------~~~~~~~~~~~~-~~~v~~~~~spdg~~l 179 (321)
T 3ow8_A 113 KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVG-----KVNIFGV-------ESGKKEYSLDTR-GKFILSIAYSPDGKYL 179 (321)
T ss_dssp EEEEEEECCTTCCCCEEECTTSSEEEEECTTS-----EEEEEET-------TTCSEEEEEECS-SSCEEEEEECTTSSEE
T ss_pred CEEEEEeCCCccEEEEEECCCCCEEEEEcCCC-----cEEEEEc-------CCCceeEEecCC-CceEEEEEECCCCCEE
Confidence 54322111111111112223556666666543 3445552 122111100111 111112222 267788
Q ss_pred EEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCC-eEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCcc
Q 013909 287 VVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMK-WKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTK 364 (434)
Q Consensus 287 v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~-W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~ 364 (434)
+.|+.++. +..|| .+.+ -..+.....+. ...+...++++++.|+.++
T Consensus 180 asg~~dg~----------------------i~iwd~~~~~~~~~~~~h~~~v---~~l~~spd~~~l~s~s~dg------ 228 (321)
T 3ow8_A 180 ASGAIDGI----------------------INIFDIATGKLLHTLEGHAMPI---RSLTFSPDSQLLVTASDDG------ 228 (321)
T ss_dssp EEEETTSC----------------------EEEEETTTTEEEEEECCCSSCC---CEEEECTTSCEEEEECTTS------
T ss_pred EEEcCCCe----------------------EEEEECCCCcEEEEEcccCCce---eEEEEcCCCCEEEEEcCCC------
Confidence 88887653 77777 4442 22222211111 1111334677888887653
Q ss_pred ceeeeccEEEEECCCCceE
Q 013909 365 RMILVGEVFQFHLDSLTWS 383 (434)
Q Consensus 365 ~~~~~~~v~~yd~~~~~W~ 383 (434)
.+.+||+.+....
T Consensus 229 ------~i~iwd~~~~~~~ 241 (321)
T 3ow8_A 229 ------YIKIYDVQHANLA 241 (321)
T ss_dssp ------CEEEEETTTCCEE
T ss_pred ------eEEEEECCCccee
Confidence 5888998876643
No 64
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.15 Score=48.24 Aligned_cols=26 Identities=4% Similarity=0.026 Sum_probs=16.7
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEe
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVD 159 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 159 (434)
++..++.++.++ .+.+||..+.+-..
T Consensus 160 ~~~~l~~~~~d~------~i~iwd~~~~~~~~ 185 (425)
T 1r5m_A 160 DGTHIISMDVEN------VTILWNVISGTVMQ 185 (425)
T ss_dssp TSSEEEEEETTC------CEEEEETTTTEEEE
T ss_pred CCCEEEEEecCC------eEEEEECCCCcEEE
Confidence 555666666542 37888988876543
No 65
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=96.21 E-value=0.51 Score=43.29 Aligned_cols=211 Identities=9% Similarity=0.053 Sum_probs=99.3
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEe-cCCCCCCCCceeeEEEE-eCCEEEEEeccCCCCCCCCCceeEEEECC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVD-RFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~~ 205 (434)
++.+++.|+.++ .+.++|..+.+-.. +...+. . ..+++. -+++.++.|+.+ ..+..||..
T Consensus 91 ~~~~l~s~s~D~------~i~lWd~~~~~~~~~~~~~~~---~-~~~~~~spdg~~l~~g~~d--------g~v~i~~~~ 152 (321)
T 3ow8_A 91 TLPIAASSSLDA------HIRLWDLENGKQIKSIDAGPV---D-AWTLAFSPDSQYLATGTHV--------GKVNIFGVE 152 (321)
T ss_dssp SSSEEEEEETTS------EEEEEETTTTEEEEEEECCTT---C-CCCEEECTTSSEEEEECTT--------SEEEEEETT
T ss_pred CCCEEEEEeCCC------cEEEEECCCCCEEEEEeCCCc---c-EEEEEECCCCCEEEEEcCC--------CcEEEEEcC
Confidence 445666766542 47888988876432 221111 1 112333 355666666642 457788887
Q ss_pred CCceEecCCCCCCcccceEE-EECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEE-ccCCCCCCCceeEEE-EC
Q 013909 206 TRKWDSIPPLPSPRYSPATQ-LWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRT-EIPIPRGGPHRACFV-FN 282 (434)
Q Consensus 206 t~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~-~~~~p~~~~~~~~~~-~~ 282 (434)
+.+-...-... ...-.+++ .-+++.++.|+.++ .+.+|++ .+.+-.. +........ +++. .+
T Consensus 153 ~~~~~~~~~~~-~~~v~~~~~spdg~~lasg~~dg-----~i~iwd~-------~~~~~~~~~~~h~~~v~--~l~~spd 217 (321)
T 3ow8_A 153 SGKKEYSLDTR-GKFILSIAYSPDGKYLASGAIDG-----IINIFDI-------ATGKLLHTLEGHAMPIR--SLTFSPD 217 (321)
T ss_dssp TCSEEEEEECS-SSCEEEEEECTTSSEEEEEETTS-----CEEEEET-------TTTEEEEEECCCSSCCC--EEEECTT
T ss_pred CCceeEEecCC-CceEEEEEECCCCCEEEEEcCCC-----eEEEEEC-------CCCcEEEEEcccCCcee--EEEEcCC
Confidence 66532211111 11111122 22566777776543 4566663 2322111 111111111 2222 37
Q ss_pred CEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeE-EcCCCCCCCCccceeEEE-ECCEEEEEcCcCCC
Q 013909 283 DRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWK-VLPPMPKPNSHIECAWVI-VNNSIIITGGTTEK 359 (434)
Q Consensus 283 ~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~-~~~~~p~~r~~~~~~~~~-~~~~i~v~GG~~~~ 359 (434)
+++++.|+.++. +..|| ...+.. .+.. ...... +++. .+++.++.|+.++
T Consensus 218 ~~~l~s~s~dg~----------------------i~iwd~~~~~~~~~~~~---h~~~v~-~~~~sp~~~~l~s~s~D~- 270 (321)
T 3ow8_A 218 SQLLVTASDDGY----------------------IKIYDVQHANLAGTLSG---HASWVL-NVAFCPDDTHFVSSSSDK- 270 (321)
T ss_dssp SCEEEEECTTSC----------------------EEEEETTTCCEEEEECC---CSSCEE-EEEECTTSSEEEEEETTS-
T ss_pred CCEEEEEcCCCe----------------------EEEEECCCcceeEEEcC---CCCceE-EEEECCCCCEEEEEeCCC-
Confidence 788888887653 77777 443322 2221 111111 2222 3667777777553
Q ss_pred CCCccceeeeccEEEEECCCCceEEeccCCCceee-eeeEE-ECCEEEEEcccc
Q 013909 360 HPMTKRMILVGEVFQFHLDSLTWSVIGKLPYRIKT-TLTGF-WDGWLYFTSGQR 411 (434)
Q Consensus 360 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~~-~~~~l~v~GG~~ 411 (434)
.+.+||+.+.+-.. .+...... ..++. .+++.++.||.+
T Consensus 271 -----------~v~iwd~~~~~~~~--~~~~h~~~v~~v~~s~~g~~l~s~~~d 311 (321)
T 3ow8_A 271 -----------SVKVWDVGTRTCVH--TFFDHQDQVWGVKYNGNGSKIVSVGDD 311 (321)
T ss_dssp -----------CEEEEETTTTEEEE--EECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred -----------cEEEEeCCCCEEEE--EEcCCCCcEEEEEECCCCCEEEEEeCC
Confidence 68889987765332 22211111 12222 255666666643
No 66
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.033 Score=58.23 Aligned_cols=104 Identities=10% Similarity=0.093 Sum_probs=57.7
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-C--CEEEEEeccCCCCCCCCCceeEEEEC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-G--RYIYIVSGQYGPQCRGPTSRTFVLDS 204 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~--~~lyv~GG~~~~~~~~~~~~~~~yd~ 204 (434)
++..++.|+.++ .+.+||..++++..+..+... ...-.+++.. + +.+++.|+.+ ..+..||.
T Consensus 20 dg~~latg~~dg------~I~vwd~~~~~~~~~~~l~~h-~~~V~~l~~s~~~~~~~l~s~s~D--------g~I~vwd~ 84 (753)
T 3jro_A 20 YGKRLATCSSDK------TIKIFEVEGETHKLIDTLTGH-EGPVWRVDWAHPKFGTILASCSYD--------GKVLIWKE 84 (753)
T ss_dssp SSCCEEEEETTT------EEEEEEEETTEEEEEEEECCC-SSCEEEEEECCTTSCSEEEEEETT--------SCEEEEEE
T ss_pred CCCeEEEEECCC------cEEEEecCCCCCccceeccCC-cCceEEEEecCCCCCCEEEEEeCC--------CeEEEEEC
Confidence 455667776542 377788877777665444321 1122333432 3 5677777753 35778888
Q ss_pred CCCceEecCCCCCCcccceEEEE--C--CEEEEEcCCCCCCCCCCcceEEE
Q 013909 205 ETRKWDSIPPLPSPRYSPATQLW--R--GRLHVMGGSKENRHTPGLEHWSI 251 (434)
Q Consensus 205 ~t~~W~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~~~ 251 (434)
.+.+|..+..+.........+.+ + +++++.|+.++ .+.+|++
T Consensus 85 ~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg-----~I~vwdl 130 (753)
T 3jro_A 85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG-----KVSVVEF 130 (753)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS-----EEEEEEC
T ss_pred CCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC-----cEEEEEe
Confidence 88887666544322222223332 2 56777776543 4555653
No 67
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.1 Score=48.30 Aligned_cols=197 Identities=12% Similarity=0.134 Sum_probs=91.2
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCC--CceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEEC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTD--NKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDS 204 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t--~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~ 204 (434)
+++.++.|+.++ .+.++|..+ ..++.+..+... ...-.+++.. ++.+++.|+.++ .+..+|.
T Consensus 118 ~g~~las~s~D~------~v~iwd~~~~~~~~~~~~~~~~h-~~~v~~v~~~p~~~~l~s~s~D~--------~i~iW~~ 182 (330)
T 2hes_X 118 DGYYLATCSRDK------SVWIWETDESGEEYECISVLQEH-SQDVKHVIWHPSEALLASSSYDD--------TVRIWKD 182 (330)
T ss_dssp TSCEEEEEETTS------CEEEEECCTTCCCCEEEEEECCC-SSCEEEEEECSSSSEEEEEETTS--------CEEEEEE
T ss_pred CCCEEEEEeCCC------EEEEEeccCCCCCeEEEEEeccC-CCceEEEEECCCCCEEEEEcCCC--------eEEEEEC
Confidence 567777777653 377788743 334433222210 1111223322 566777777543 4666777
Q ss_pred CCCceEecCCCCCCcccceEEEE--C--CEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCC--CCCceeE
Q 013909 205 ETRKWDSIPPLPSPRYSPATQLW--R--GRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPR--GGPHRAC 278 (434)
Q Consensus 205 ~t~~W~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~--~~~~~~~ 278 (434)
.+..|+.+..+.........+.+ + +..++.|+.+ ..+.+|++..... .....|.....++. ...-.++
T Consensus 183 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D-----~~v~iw~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~v 256 (330)
T 2hes_X 183 YDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDD-----STVRVWKYMGDDE-DDQQEWVCEAILPDVHKRQVYNV 256 (330)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETT-----SCEEEEEEEEECT-TSCEEEEEEEECCSCCSSCEEEE
T ss_pred CCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCC-----CeEEEEEecCCCc-cccceeEEeeecccccccceEEE
Confidence 77666655433221111111222 1 3455555543 4567787642110 11234554443332 1111123
Q ss_pred EEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCc-cceeEEEE---CCEEEEE
Q 013909 279 FVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSH-IECAWVIV---NNSIIIT 353 (434)
Q Consensus 279 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~-~~~~~~~~---~~~i~v~ 353 (434)
+...+.+++.||.++. +..|| ...+|+.+......... .-.+++.. ++++++.
T Consensus 257 ~~s~~~~l~s~~~dg~----------------------v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las 314 (330)
T 2hes_X 257 AWGFNGLIASVGADGV----------------------LAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILAT 314 (330)
T ss_dssp EECTTSCEEEEETTSC----------------------EEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEE
T ss_pred EEcCCCEEEEEeCCCE----------------------EEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEE
Confidence 3334556777776543 67777 56667554322111111 11122222 4677888
Q ss_pred cCcCCCCCCccceeeeccEEEEECCC
Q 013909 354 GGTTEKHPMTKRMILVGEVFQFHLDS 379 (434)
Q Consensus 354 GG~~~~~~~~~~~~~~~~v~~yd~~~ 379 (434)
||.++ .+.++|+++
T Consensus 315 ~s~Dg------------~v~~W~~~~ 328 (330)
T 2hes_X 315 GGDDG------------IVNFWSLEK 328 (330)
T ss_dssp EETTS------------EEEEEEC--
T ss_pred ecCCC------------cEEEEEecc
Confidence 88653 567777653
No 68
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=96.11 E-value=0.057 Score=50.09 Aligned_cols=101 Identities=7% Similarity=-0.005 Sum_probs=48.6
Q ss_pred ceeeccCCCCcEEEcCCCCCCC-CceeEEEE-CC-EEEEEeccCCCCCceeeEEEEECC-CCceEecCCCC----CCCC-
Q 013909 98 TFADLPAPDLEWEQMPSAPVPR-LDGAAIQI-KN-LFYVFAGYGSLDYVHSHVDVYNFT-DNKWVDRFDMP----KDMA- 168 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R-~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~-t~~W~~~~~~~----~~~~- 168 (434)
.+..++..+++++.+..+.... .-..++.. ++ .||+.+..+ ..+.+||+. +.+...+.... .|.+
T Consensus 64 ~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~------~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~ 137 (347)
T 3hfq_A 64 GIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHK------GTAEVMKIAADGALTLTDTVQHSGHGPRPE 137 (347)
T ss_dssp EEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTT------TEEEEEEECTTSCEEEEEEEECCCCCSSTT
T ss_pred eEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCC------CEEEEEEeCCCCCeeecceeecCCCCCCcc
Confidence 6777777777666655422111 11223323 44 566665321 236777774 33333322111 1101
Q ss_pred ---ceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECC-CCceEec
Q 013909 169 ---HSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSE-TRKWDSI 212 (434)
Q Consensus 169 ---r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~-t~~W~~~ 212 (434)
..-+++++. ++++|+.+.. ...+.+||.. +.+...+
T Consensus 138 ~~~~~~~~~~~spdg~l~v~~~~--------~~~v~~~~~~~~g~~~~~ 178 (347)
T 3hfq_A 138 QDGSHIHYTDLTPDNRLAVIDLG--------SDKVYVYNVSDAGQLSEQ 178 (347)
T ss_dssp CSSCCEEEEEECTTSCEEEEETT--------TTEEEEEEECTTSCEEEE
T ss_pred ccCCCceEEEECCCCcEEEEeCC--------CCEEEEEEECCCCcEEEe
Confidence 123334443 5667776431 2578889887 5555443
No 69
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=96.11 E-value=0.72 Score=41.69 Aligned_cols=186 Identities=12% Similarity=0.089 Sum_probs=90.3
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
+++.++.|+.++ .+.++|..+.+....-.... ..-.+++.. ++++++.|+.+ ..+.+||..+
T Consensus 34 ~~~~l~s~~~dg------~i~iw~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~s~~~d--------~~i~vwd~~~ 96 (312)
T 4ery_A 34 NGEWLASSSADK------LIKIWGAYDGKFEKTISGHK---LGISDVAWSSDSNLLVSASDD--------KTLKIWDVSS 96 (312)
T ss_dssp TSSEEEEEETTS------CEEEEETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETT--------SEEEEEETTT
T ss_pred CCCEEEEeeCCC------eEEEEeCCCcccchhhccCC---CceEEEEEcCCCCEEEEECCC--------CEEEEEECCC
Confidence 556677776553 37778888877654321111 112233333 55667777643 4678889887
Q ss_pred CceEecCCCCCCcccceEEE--ECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEE--C
Q 013909 207 RKWDSIPPLPSPRYSPATQL--WRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVF--N 282 (434)
Q Consensus 207 ~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~--~ 282 (434)
.+-... +.........+. -++++++.|+.++ .+.+|++ .+.+ .+..++........+.+ +
T Consensus 97 ~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~d~-----~i~iwd~-------~~~~--~~~~~~~~~~~v~~~~~~~~ 160 (312)
T 4ery_A 97 GKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDE-----SVRIWDV-------KTGK--CLKTLPAHSDPVSAVHFNRD 160 (312)
T ss_dssp CCEEEE--EECCSSCEEEEEECSSSSEEEEEETTS-----CEEEEET-------TTCC--EEEEECCCSSCEEEEEECTT
T ss_pred CcEEEE--EcCCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEEC-------CCCE--EEEEecCCCCcEEEEEEcCC
Confidence 653221 110111111112 2456666666543 4566663 2222 11122211111122222 6
Q ss_pred CEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCe-EEcCCCCCCCCccceeEEEECCEEEEEcCcCCCC
Q 013909 283 DRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKW-KVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKH 360 (434)
Q Consensus 283 ~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W-~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~ 360 (434)
+++++.|+.++. +..|| .+.+- ..+..... ..........+++.++.|+.+
T Consensus 161 ~~~l~~~~~d~~----------------------i~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d--- 213 (312)
T 4ery_A 161 GSLIVSSSYDGL----------------------CRIWDTASGQCLKTLIDDDN--PPVSFVKFSPNGKYILAATLD--- 213 (312)
T ss_dssp SSEEEEEETTSC----------------------EEEEETTTCCEEEEECCSSC--CCEEEEEECTTSSEEEEEETT---
T ss_pred CCEEEEEeCCCc----------------------EEEEECCCCceeeEEeccCC--CceEEEEECCCCCEEEEEcCC---
Confidence 778888876653 77777 44332 22211111 111111123456677777654
Q ss_pred CCccceeeeccEEEEECCCCce
Q 013909 361 PMTKRMILVGEVFQFHLDSLTW 382 (434)
Q Consensus 361 ~~~~~~~~~~~v~~yd~~~~~W 382 (434)
..+.+||+.+.+-
T Consensus 214 ---------~~i~iwd~~~~~~ 226 (312)
T 4ery_A 214 ---------NTLKLWDYSKGKC 226 (312)
T ss_dssp ---------TEEEEEETTTTEE
T ss_pred ---------CeEEEEECCCCcE
Confidence 2688899887654
No 70
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=96.07 E-value=0.018 Score=53.08 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=15.7
Q ss_pred ECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCc
Q 013909 346 VNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLT 381 (434)
Q Consensus 346 ~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~ 381 (434)
.+++.++.|+.++ .+.+||+++++
T Consensus 316 ~dg~~l~sgs~Dg------------~v~iW~~~tGt 339 (340)
T 4aow_A 316 ADGQTLFAGYTDN------------LVRVWQVTIGT 339 (340)
T ss_dssp TTSSEEEEEETTS------------CEEEEEEEC--
T ss_pred CCCCEEEEEeCCC------------EEEEEeCCCcC
Confidence 3667778887653 57888877653
No 71
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.05 E-value=1.5 Score=45.87 Aligned_cols=238 Identities=11% Similarity=0.101 Sum_probs=118.1
Q ss_pred ceeeccCCCCcEEEcCCCCCCC--C---ceeEEEE-CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCC-C---CC
Q 013909 98 TFADLPAPDLEWEQMPSAPVPR--L---DGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP-K---DM 167 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R--~---~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~-~---~~ 167 (434)
-+..+++.+..++.....+.+. . -.+++.- ++.|+|- .... -+.+||+.++++......+ . ..
T Consensus 331 Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiG--t~~~-----Gl~~~~~~~~~~~~~~~~~~~~~~~l 403 (795)
T 4a2l_A 331 GLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIG--TNDG-----GLNLYNPITQRFTSYTLQEDESARGI 403 (795)
T ss_dssp CEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEE--ESSS-----CEEEECTTTCCEEEECCC------CC
T ss_pred CeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEE--ECCC-----CeEEEcCCCCcEEEEecCCCCcccCC
Confidence 4566666666555544322111 1 1122222 4578873 2211 2788999999887764321 0 00
Q ss_pred -CceeeEEEEe-CCE-EEEEeccCCCCCCCCCceeEEEECCCCceEecCCC----CCCcccceEEEE-CCEEEEEcCCCC
Q 013909 168 -AHSHLGVVSD-GRY-IYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL----PSPRYSPATQLW-RGRLHVMGGSKE 239 (434)
Q Consensus 168 -~r~~~~~~~~-~~~-lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~----p~~r~~~~~~~~-~~~iyv~GG~~~ 239 (434)
...-.+++.. ++. |++ |.. ..-+.+||+.+.+++..... +.... .+++.. ++.|++... .
T Consensus 404 ~~~~v~~i~~d~~g~~lWi-gt~--------~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v-~~i~~d~~g~lwigt~-~- 471 (795)
T 4a2l_A 404 GSNNIKAVYVDEKKSLVYI-GTH--------AGGLSILHRNSGQVENFNQRNSQLVNENV-YAILPDGEGNLWLGTL-S- 471 (795)
T ss_dssp SCSCEEEEEEETTTTEEEE-EET--------TTEEEEEETTTCCEEEECTTTSCCSCSCE-EEEEECSSSCEEEEES-S-
T ss_pred CCccEEEEEEcCCCCEEEE-EeC--------cCceeEEeCCCCcEEEeecCCCCcCCCee-EEEEECCCCCEEEEec-C-
Confidence 1223344443 566 776 321 14578999999888776531 11111 122222 567777642 2
Q ss_pred CCCCCCcceEEEEeeccccccCceEEccCC------CCCCCceeEEE-ECCEEEEEcCCCCCCCCCCCCCccccccccce
Q 013909 240 NRHTPGLEHWSIAVKDGKALEKAWRTEIPI------PRGGPHRACFV-FNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEV 312 (434)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~------p~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~ 312 (434)
-+.+|+ +.+.+|+..... +.... .++.. .++.||+-.. .
T Consensus 472 -----Gl~~~~-------~~~~~~~~~~~~~~~~~~~~~~i-~~i~~d~~g~lWigt~-~-------------------- 517 (795)
T 4a2l_A 472 -----ALVRFN-------PEQRSFTTIEKEKDGTPVVSKQI-TTLFRDSHKRLWIGGE-E-------------------- 517 (795)
T ss_dssp -----CEEEEE-------TTTTEEEECCBCTTCCBCCCCCE-EEEEECTTCCEEEEES-S--------------------
T ss_pred -----ceeEEe-------CCCCeEEEccccccccccCCceE-EEEEECCCCCEEEEeC-C--------------------
Confidence 133444 677777765432 11111 12222 2677887543 2
Q ss_pred eeCcEEEeC-CCCCeEEcCCC-C---CCCCccceeEEE-ECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEec
Q 013909 313 VYGDVYMLD-DEMKWKVLPPM-P---KPNSHIECAWVI-VNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIG 386 (434)
Q Consensus 313 ~~~~v~~yd-~~~~W~~~~~~-p---~~r~~~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~ 386 (434)
-+++|| .+.++ ..... . .+... -.+++. .++.|++-.. . -+++||+++++++...
T Consensus 518 ---Gl~~~~~~~~~~-~~~~~~~~~~l~~~~-i~~i~~d~~g~lWigT~-~-------------Gl~~~d~~~~~~~~~~ 578 (795)
T 4a2l_A 518 ---GLSVFKQEGLDI-QKASILPVSNVTKLF-TNCIYEASNGIIWVGTR-E-------------GFYCFNEKDKQIKRYN 578 (795)
T ss_dssp ---CEEEEEEETTEE-EECCCSCSCGGGGSC-EEEEEECTTSCEEEEES-S-------------CEEEEETTTTEEEEEC
T ss_pred ---ceEEEeCCCCeE-EEecCCCCCCCCCCe-eEEEEECCCCCEEEEeC-C-------------CceeECCCCCcEEEeC
Confidence 288888 56666 33211 0 11111 112222 3567776432 1 3789999999988764
Q ss_pred c---CCCceeeeeeEE-ECCEEEEEc
Q 013909 387 K---LPYRIKTTLTGF-WDGWLYFTS 408 (434)
Q Consensus 387 ~---lp~~r~~~~~~~-~~~~l~v~G 408 (434)
. +|.... .+++. -++.|++.+
T Consensus 579 ~~~gl~~~~i-~~i~~d~~g~lWi~t 603 (795)
T 4a2l_A 579 TTNGLPNNVV-YGILEDSFGRLWLST 603 (795)
T ss_dssp GGGTCSCSCE-EEEEECTTSCEEEEE
T ss_pred CCCCCchhhe-EEEEECCCCCEEEEc
Confidence 2 444322 22222 246677664
No 72
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=95.97 E-value=0.14 Score=46.88 Aligned_cols=131 Identities=10% Similarity=0.018 Sum_probs=65.1
Q ss_pred ceeeccCCCCcEEEcCCCCCCCCceeEEEE-CC-EEEEEeccCCCCCceeeEEEEECCCCce-E-ecCCCCCCCCceeeE
Q 013909 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI-KN-LFYVFAGYGSLDYVHSHVDVYNFTDNKW-V-DRFDMPKDMAHSHLG 173 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~t~~W-~-~~~~~~~~~~r~~~~ 173 (434)
.+..+|..+++....-..+. ....++.. ++ .+|+.+..+ +.++++|+.+++- . .+..... +....+
T Consensus 21 ~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~ 90 (331)
T 3u4y_A 21 RISFFSTDTLEILNQITLGY--DFVDTAITSDCSNVVVTSDFC------QTLVQIETQLEPPKVVAIQEGQS--SMADVD 90 (331)
T ss_dssp EEEEEETTTCCEEEEEECCC--CEEEEEECSSSCEEEEEESTT------CEEEEEECSSSSCEEEEEEECSS--CCCCEE
T ss_pred eEEEEeCcccceeeeEEccC--CcceEEEcCCCCEEEEEeCCC------CeEEEEECCCCceeEEecccCCC--CccceE
Confidence 67778888777654433332 12222222 44 577766532 2599999998874 2 2222221 121122
Q ss_pred EEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEE-CC-EEEEEcCCCCCCCCCC-cceEE
Q 013909 174 VVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW-RG-RLHVMGGSKENRHTPG-LEHWS 250 (434)
Q Consensus 174 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~-~~~~~ 250 (434)
..-.++.|| .+...+ ....+.+||+.+.+....-+. ....+.++.. ++ .+|+.+... .. +.+|+
T Consensus 91 ~s~dg~~l~-~~~~~~-----~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~spdg~~l~~~~~~~-----~~~i~~~~ 157 (331)
T 3u4y_A 91 ITPDDQFAV-TVTGLN-----HPFNMQSYSFLKNKFISTIPI--PYDAVGIAISPNGNGLILIDRSS-----ANTVRRFK 157 (331)
T ss_dssp ECTTSSEEE-ECCCSS-----SSCEEEEEETTTTEEEEEEEC--CTTEEEEEECTTSSCEEEEEETT-----TTEEEEEE
T ss_pred ECCCCCEEE-EecCCC-----CcccEEEEECCCCCeEEEEEC--CCCccceEECCCCCEEEEEecCC-----CceEEEEE
Confidence 222345677 332111 013799999988875443222 1112333332 34 577775432 23 55666
Q ss_pred E
Q 013909 251 I 251 (434)
Q Consensus 251 ~ 251 (434)
+
T Consensus 158 ~ 158 (331)
T 3u4y_A 158 I 158 (331)
T ss_dssp E
T ss_pred E
Confidence 4
No 73
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=95.89 E-value=0.12 Score=47.78 Aligned_cols=61 Identities=5% Similarity=-0.021 Sum_probs=36.0
Q ss_pred eEEEEECCCCceEecCCCCCCCCceeeEEEE-eCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCC
Q 013909 146 HVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP 214 (434)
Q Consensus 146 ~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~ 214 (434)
.+|.+|..+++++.+..... ...-..+++ -+++||+.+.... ...++.||+.+.+++.+..
T Consensus 19 ~v~~~d~~tg~~~~~~~~~~--~~~p~~~a~spdg~l~~~~~~~~------~~~v~~~~~~~g~~~~~~~ 80 (347)
T 3hfq_A 19 YQGTLDTTAKTLTNDGLLAA--TQNPTYLALSAKDCLYSVDKEDD------EGGIAAWQIDGQTAHKLNT 80 (347)
T ss_dssp EEEEEETTTTEEEEEEEEEE--CSCCCCEEECTTCEEEEEEEETT------EEEEEEEEEETTEEEEEEE
T ss_pred EEEEEcCCCCeEEEeeeeec--cCCcceEEEccCCeEEEEEecCC------CceEEEEEecCCcEEEeee
Confidence 47888998888876432211 011112333 3677887754211 2578899998887766643
No 74
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=95.88 E-value=0.65 Score=40.84 Aligned_cols=119 Identities=12% Similarity=0.016 Sum_probs=58.5
Q ss_pred ceeeccCCCCcEEEcCCCCCCCCceeEEEE-CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEE
Q 013909 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS 176 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~ 176 (434)
.+..+++.+........... ..-.+++.. ++.+|+... + ..+.+||+.++....+..... ..-.++++
T Consensus 47 ~i~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~-~------~~i~~~d~~~~~~~~~~~~~~---~~p~~i~~ 115 (270)
T 1rwi_B 47 RVVKLATGSTGTTVLPFNGL-YQPQGLAVDGAGTVYVTDF-N------NRVVTLAAGSNNQTVLPFDGL---NYPEGLAV 115 (270)
T ss_dssp EEEEECC-----EECCCCSC-CSCCCEEECTTCCEEEEET-T------TEEEEECTTCSCCEECCCCSC---SSEEEEEE
T ss_pred cEEEecCCCcccceEeeCCc-CCcceeEECCCCCEEEEcC-C------CEEEEEeCCCceEeeeecCCc---CCCcceEE
Confidence 55666665544333322111 112233333 567888764 1 248999998876554432111 22344555
Q ss_pred e-CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEE-CCEEEEEcC
Q 013909 177 D-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW-RGRLHVMGG 236 (434)
Q Consensus 177 ~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG 236 (434)
. +++||+.... ...+.+||..+........... ..-..++.. +++||+...
T Consensus 116 ~~~g~l~v~~~~--------~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~ 168 (270)
T 1rwi_B 116 DTQGAVYVADRG--------NNRVVKLAAGSKTQTVLPFTGL-NDPDGVAVDNSGNVYVTDT 168 (270)
T ss_dssp CTTCCEEEEEGG--------GTEEEEECTTCCSCEECCCCSC-CSCCCEEECTTCCEEEEEG
T ss_pred CCCCCEEEEECC--------CCEEEEEECCCceeEeeccccC-CCceeEEEeCCCCEEEEEC
Confidence 4 6789987532 2468888877665544322111 111223332 577888753
No 75
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=95.82 E-value=0.45 Score=45.05 Aligned_cols=93 Identities=8% Similarity=-0.042 Sum_probs=49.1
Q ss_pred ccceeeccCCCCcEEEcCCCCCCCCceeEEEE-CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEE
Q 013909 96 SATFADLPAPDLEWEQMPSAPVPRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGV 174 (434)
Q Consensus 96 ~~~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~ 174 (434)
...+..++..+++............-.+++.. ++.+++.|+.++ .+.+||..+.+-...-.... ..-.++
T Consensus 112 d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~---~~v~~~ 182 (401)
T 4aez_A 112 ERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNG------LVDIYDVESQTKLRTMAGHQ---ARVGCL 182 (401)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTS------CEEEEETTTCCEEEEECCCS---SCEEEE
T ss_pred CCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCC------eEEEEECcCCeEEEEecCCC---CceEEE
Confidence 34677777777765544333322222222222 566777776543 38889998876433211111 112233
Q ss_pred EEeCCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 175 VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 175 ~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
+. ++.+++.|+.+ ..+..||..+
T Consensus 183 ~~-~~~~l~~~~~d--------g~i~i~d~~~ 205 (401)
T 4aez_A 183 SW-NRHVLSSGSRS--------GAIHHHDVRI 205 (401)
T ss_dssp EE-ETTEEEEEETT--------SEEEEEETTS
T ss_pred EE-CCCEEEEEcCC--------CCEEEEeccc
Confidence 33 45566666643 4678888874
No 76
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=95.78 E-value=0.18 Score=46.89 Aligned_cols=184 Identities=9% Similarity=0.156 Sum_probs=89.5
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
++++++.||.++ .+.++|..+++|.....+.......-.+++.. ++++++.|+.++ .+.++|..+
T Consensus 27 ~g~~las~~~D~------~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~--------~v~iw~~~~ 92 (345)
T 3fm0_A 27 AGTLLASCGGDR------RIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA--------TTCIWKKNQ 92 (345)
T ss_dssp TSSCEEEEETTS------CEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS--------CEEEEEECC
T ss_pred CCCEEEEEcCCC------eEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC--------cEEEEEccC
Confidence 667788887653 37778888887753322111111222333332 566777777543 456677776
Q ss_pred CceEecCCCCCCcccceEEEE--CCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEE--C
Q 013909 207 RKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVF--N 282 (434)
Q Consensus 207 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~--~ 282 (434)
..+..+..+.........+.+ ++++++.|+.+ ..+.+|++. ....+..+..+.........+.+ +
T Consensus 93 ~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D-----~~v~iwd~~------~~~~~~~~~~~~~h~~~v~~~~~~p~ 161 (345)
T 3fm0_A 93 DDFECVTTLEGHENEVKSVAWAPSGNLLATCSRD-----KSVWVWEVD------EEDEYECVSVLNSHTQDVKHVVWHPS 161 (345)
T ss_dssp C-EEEEEEECCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEEEC------TTSCEEEEEEECCCCSCEEEEEECSS
T ss_pred CCeEEEEEccCCCCCceEEEEeCCCCEEEEEECC-----CeEEEEECC------CCCCeEEEEEecCcCCCeEEEEECCC
Confidence 665544333221111122222 56677777654 356777752 22233322222211111122222 6
Q ss_pred CEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEEECCEEEEEcCcCC
Q 013909 283 DRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTE 358 (434)
Q Consensus 283 ~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~ 358 (434)
+++++.|+.++. +..|| ...+|..+..+..........+...+++.++.|+.++
T Consensus 162 ~~~l~s~s~d~~----------------------i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~ 216 (345)
T 3fm0_A 162 QELLASASYDDT----------------------VKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDR 216 (345)
T ss_dssp SSCEEEEETTSC----------------------EEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCEEEEEeCCCc----------------------EEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCC
Confidence 777888876653 66777 5566654433322222211111223566777777553
No 77
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=95.78 E-value=1 Score=40.40 Aligned_cols=209 Identities=12% Similarity=0.071 Sum_probs=104.8
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCc--eEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~ 205 (434)
.+++++.|..+ ..+.++|+++.+ |+.-..-. ...+...+.-++++++.+ .+.+..||+
T Consensus 4 ~~~~lv~~~~~------~~v~~~d~~tG~~~w~~~~~~~---~~~~~~~~~pdG~ilvs~----------~~~V~~~d~- 63 (276)
T 3no2_A 4 PQHLLVGGSGW------NKIAIINKDTKEIVWEYPLEKG---WECNSVAATKAGEILFSY----------SKGAKMITR- 63 (276)
T ss_dssp CCEEEEECTTC------SEEEEEETTTTEEEEEEECCTT---CCCCEEEECTTSCEEEEC----------BSEEEEECT-
T ss_pred CCcEEEeeCCC------CEEEEEECCCCeEEEEeCCCcc---CCCcCeEECCCCCEEEeC----------CCCEEEECC-
Confidence 45677776533 358899998875 77533211 122333344577888832 146889998
Q ss_pred CC--ceEecCCCCCCcccceEE-EECCEEEEEcCCCCCCCCCCcceEEEEeeccccccC-ceEEccC--C--CCCCCcee
Q 013909 206 TR--KWDSIPPLPSPRYSPATQ-LWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEK-AWRTEIP--I--PRGGPHRA 277 (434)
Q Consensus 206 t~--~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~-~W~~~~~--~--p~~~~~~~ 277 (434)
+. .|+.-.+ .....+++. ..++++++...... ..++.++ +..+ .|+.... . +.......
T Consensus 64 ~G~~~W~~~~~--~~~~~~~~~~~~dG~~lv~~~~~~------~~v~~vd-----~~Gk~l~~~~~~~~~~~~~~~~~~v 130 (276)
T 3no2_A 64 DGRELWNIAAP--AGCEMQTARILPDGNALVAWCGHP------STILEVN-----MKGEVLSKTEFETGIERPHAQFRQI 130 (276)
T ss_dssp TSCEEEEEECC--TTCEEEEEEECTTSCEEEEEESTT------EEEEEEC-----TTSCEEEEEEECCSCSSGGGSCSCC
T ss_pred CCCEEEEEcCC--CCccccccEECCCCCEEEEecCCC------CEEEEEe-----CCCCEEEEEeccCCCCcccccccCc
Confidence 44 3765442 111222333 33666666643211 1122221 3222 2332111 1 10011113
Q ss_pred EEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCC-CeEEcCCCCCCCCccceeEEEECCEEEEEcC
Q 013909 278 CFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEM-KWKVLPPMPKPNSHIECAWVIVNNSIIITGG 355 (434)
Q Consensus 278 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~-~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG 355 (434)
....++.+++....++ .|.+|| ..+ .|+.-.+. .| ++ +....++.+++.+.
T Consensus 131 ~~~~~G~~lv~~~~~~----------------------~v~~~d~~G~~~w~~~~~~-~~---~~-~~~~~~g~~~v~~~ 183 (276)
T 3no2_A 131 NKNKKGNYLVPLFATS----------------------EVREIAPNGQLLNSVKLSG-TP---FS-SAFLDNGDCLVACG 183 (276)
T ss_dssp EECTTSCEEEEETTTT----------------------EEEEECTTSCEEEEEECSS-CC---CE-EEECTTSCEEEECB
T ss_pred eECCCCCEEEEecCCC----------------------EEEEECCCCCEEEEEECCC-Cc---cc-eeEcCCCCEEEEeC
Confidence 3445677776654332 489999 533 67764321 11 12 33455778888775
Q ss_pred cCCCCCCccceeeeccEEEEECCCCc--eEEec-cCCCcee-e-eee-EEECCEEEEEc
Q 013909 356 TTEKHPMTKRMILVGEVFQFHLDSLT--WSVIG-KLPYRIK-T-TLT-GFWDGWLYFTS 408 (434)
Q Consensus 356 ~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~~-~lp~~r~-~-~~~-~~~~~~l~v~G 408 (434)
.+ ..+..+|+++.+ |+.-. .++..+. . .++ ...++.+||..
T Consensus 184 ~~------------~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 184 DA------------HCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp TT------------SEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred CC------------CeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 43 258999999655 66542 2332221 1 223 33478888886
No 78
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=95.77 E-value=0.37 Score=46.17 Aligned_cols=202 Identities=9% Similarity=0.022 Sum_probs=102.9
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-CC-EEEEEeccCCCCCCCCCceeEEEECC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GR-YIYIVSGQYGPQCRGPTSRTFVLDSE 205 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~yd~~ 205 (434)
+++.+++++.+... ..++++|+.+++...+...+. ...+.+.. ++ +|++.+..++ ...++.+|+.
T Consensus 189 dg~~la~~s~~~~~---~~i~~~d~~tg~~~~l~~~~~----~~~~~~~spdg~~la~~~~~~g------~~~i~~~d~~ 255 (415)
T 2hqs_A 189 DGSKLAYVTFESGR---SALVIQTLANGAVRQVASFPR----HNGAPAFSPDGSKLAFALSKTG------SLNLYVMDLA 255 (415)
T ss_dssp TSSEEEEEECTTSS---CEEEEEETTTCCEEEEECCSS----CEEEEEECTTSSEEEEEECTTS------SCEEEEEETT
T ss_pred CCCEEEEEEecCCC---cEEEEEECCCCcEEEeecCCC----cccCEEEcCCCCEEEEEEecCC------CceEEEEECC
Confidence 56666666654322 359999999988776654432 12233333 44 4665554322 3579999999
Q ss_pred CCceEecCCCCCCcccceEE-EECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEE-ECC
Q 013909 206 TRKWDSIPPLPSPRYSPATQ-LWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFV-FND 283 (434)
Q Consensus 206 t~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~-~~~ 283 (434)
+.+...+..-+... ...+ .-+++.++++...+ ....+|.++ ..+.+-..+.... .....++. .++
T Consensus 256 ~~~~~~l~~~~~~~--~~~~~spdg~~l~~~s~~~----g~~~i~~~d-----~~~~~~~~l~~~~--~~~~~~~~spdG 322 (415)
T 2hqs_A 256 SGQIRQVTDGRSNN--TEPTWFPDSQNLAFTSDQA----GRPQVYKVN-----INGGAPQRITWEG--SQNQDADVSSDG 322 (415)
T ss_dssp TCCEEECCCCSSCE--EEEEECTTSSEEEEEECTT----SSCEEEEEE-----TTSSCCEECCCSS--SEEEEEEECTTS
T ss_pred CCCEEeCcCCCCcc--cceEECCCCCEEEEEECCC----CCcEEEEEE-----CCCCCEEEEecCC--CcccCeEECCCC
Confidence 98877665433211 1112 12455444433211 122334322 3344333322111 11111221 256
Q ss_pred EEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCC
Q 013909 284 RLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPM 362 (434)
Q Consensus 284 ~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~ 362 (434)
+.+++++.... ...++.+| .+.+...+.... . ........+++.+++++.+...
T Consensus 323 ~~l~~~~~~~g-------------------~~~i~~~d~~~~~~~~l~~~~---~-~~~~~~spdg~~l~~~s~~~~~-- 377 (415)
T 2hqs_A 323 KFMVMVSSNGG-------------------QQHIAKQDLATGGVQVLSSTF---L-DETPSLAPNGTMVIYSSSQGMG-- 377 (415)
T ss_dssp SEEEEEEECSS-------------------CEEEEEEETTTCCEEECCCSS---S-CEEEEECTTSSEEEEEEEETTE--
T ss_pred CEEEEEECcCC-------------------ceEEEEEECCCCCEEEecCCC---C-cCCeEEcCCCCEEEEEEcCCCc--
Confidence 65555553311 12588888 666776665332 1 1112234467777777654321
Q ss_pred ccceeeeccEEEEECCCCceEEecc
Q 013909 363 TKRMILVGEVFQFHLDSLTWSVIGK 387 (434)
Q Consensus 363 ~~~~~~~~~v~~yd~~~~~W~~~~~ 387 (434)
..++++|++......++.
T Consensus 378 -------~~l~~~d~~g~~~~~l~~ 395 (415)
T 2hqs_A 378 -------SVLNLVSTDGRFKARLPA 395 (415)
T ss_dssp -------EEEEEEETTSCCEEECCC
T ss_pred -------cEEEEEECCCCcEEEeeC
Confidence 379999998887776643
No 79
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=95.76 E-value=1.1 Score=42.49 Aligned_cols=95 Identities=13% Similarity=0.114 Sum_probs=51.4
Q ss_pred CcEEEcCCCCCCCCceeEEEE---CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCC---CCCCCc-------eeeE
Q 013909 107 LEWEQMPSAPVPRLDGAAIQI---KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDM---PKDMAH-------SHLG 173 (434)
Q Consensus 107 ~~W~~~~~~p~~R~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~---~~~~~r-------~~~~ 173 (434)
.+|+.+...+....-++++.. .+.||+.+...... .-+++.+-...+|+.+... +....+ .-.+
T Consensus 43 ~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g---~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~ 119 (394)
T 3b7f_A 43 RTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLG---PTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFW 119 (394)
T ss_dssp CSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CC---EEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEE
T ss_pred CCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCC---ccEEEeCCCCCCceECCccccCCCcccccccccccceeE
Confidence 589876421211222333332 46788765432111 2477777778899988532 211111 1223
Q ss_pred EEEe----CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecC
Q 013909 174 VVSD----GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP 213 (434)
Q Consensus 174 ~~~~----~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~ 213 (434)
+++. .+.||+.+- ...+++.+-...+|+.+.
T Consensus 120 l~~~~~~~~~~l~~g~~---------~ggl~~S~DgG~tW~~~~ 154 (394)
T 3b7f_A 120 LTPGHASEPGTWYAGTS---------PQGLFRSTDHGASWEPVA 154 (394)
T ss_dssp EEECCTTSTTCEEEEEE---------TTEEEEESSTTSBCEECH
T ss_pred EEeCCCCCCCEEEEEec---------CCcEEEEcCCCCCeEECc
Confidence 4443 577887542 145788877788999885
No 80
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=95.71 E-value=0.73 Score=43.50 Aligned_cols=64 Identities=8% Similarity=-0.084 Sum_probs=37.4
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
++.+++.|+.++ .+.+||+.+.+-...-... ...-.+++.. ++++++.|+.+ ..+.+||..+
T Consensus 108 ~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~s~s~d--------~~i~iwd~~~ 170 (420)
T 3vl1_A 108 QMRRFILGTTEG------DIKVLDSNFNLQREIDQAH---VSEITKLKFFPSGEALISSSQD--------MQLKIWSVKD 170 (420)
T ss_dssp SSCEEEEEETTS------CEEEECTTSCEEEEETTSS---SSCEEEEEECTTSSEEEEEETT--------SEEEEEETTT
T ss_pred CCCEEEEEECCC------CEEEEeCCCcceeeecccc---cCccEEEEECCCCCEEEEEeCC--------CeEEEEeCCC
Confidence 677788887643 3788898877654332111 1222334443 55566666642 4688899876
Q ss_pred Cc
Q 013909 207 RK 208 (434)
Q Consensus 207 ~~ 208 (434)
.+
T Consensus 171 ~~ 172 (420)
T 3vl1_A 171 GS 172 (420)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 81
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=95.71 E-value=0.86 Score=46.86 Aligned_cols=99 Identities=18% Similarity=0.315 Sum_probs=59.8
Q ss_pred eeEEEECCEEEEEeccCCCCCceeeEEEEECCCCc--eEecCCCCCCC------CceeeEEEEeCCEEEEEeccCCCCCC
Q 013909 122 GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDM------AHSHLGVVSDGRYIYIVSGQYGPQCR 193 (434)
Q Consensus 122 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~------~r~~~~~~~~~~~lyv~GG~~~~~~~ 193 (434)
.+-++.++.||+.... ..++.+|..|.+ |+.-...+... .....+.++.+++||+...
T Consensus 71 ~~P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~------- 136 (677)
T 1kb0_A 71 ATPVVVDGIMYVSASW-------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW------- 136 (677)
T ss_dssp CCCEEETTEEEEECGG-------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-------
T ss_pred eCCEEECCEEEEECCC-------CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC-------
Confidence 3345679999998652 358999998875 88654332100 0112345668899998632
Q ss_pred CCCceeEEEECCCCc--eEecCC-C-CC-CcccceEEEECCEEEEEcC
Q 013909 194 GPTSRTFVLDSETRK--WDSIPP-L-PS-PRYSPATQLWRGRLHVMGG 236 (434)
Q Consensus 194 ~~~~~~~~yd~~t~~--W~~~~~-~-p~-~r~~~~~~~~~~~iyv~GG 236 (434)
...++.+|.+|.+ |+.-.. - +. .....+.++.++++|+..+
T Consensus 137 --dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~ 182 (677)
T 1kb0_A 137 --DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNG 182 (677)
T ss_dssp --TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCB
T ss_pred --CCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEec
Confidence 2578999998775 876432 1 11 1122234466888887654
No 82
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=95.67 E-value=0.61 Score=43.91 Aligned_cols=106 Identities=8% Similarity=0.111 Sum_probs=52.6
Q ss_pred CEEEEEeccCCCCCceeeEEEEECCCCc------eE-ecCCCCCCCCceeeEEEEe-C-CEEEEEeccCCCCCCCCCcee
Q 013909 129 NLFYVFAGYGSLDYVHSHVDVYNFTDNK------WV-DRFDMPKDMAHSHLGVVSD-G-RYIYIVSGQYGPQCRGPTSRT 199 (434)
Q Consensus 129 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~------W~-~~~~~~~~~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~ 199 (434)
+.+++.|+.++ .+.+||..+.+ -. .+...... ...-.+++.. + +.+++.|+.+ ..+
T Consensus 126 ~~~l~s~~~dg------~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d--------g~v 190 (416)
T 2pm9_A 126 DNVLASGGNNG------EIFIWDMNKCTESPSNYTPLTPGQSMSS-VDEVISLAWNQSLAHVFASAGSS--------NFA 190 (416)
T ss_dssp TTBEEEECSSS------CEEBCBTTTTSSCTTTCCCBCCCCSCCS-SCCCCEEEECSSCTTEEEEESSS--------SCE
T ss_pred CCEEEEEcCCC------eEEEEECCCCccccccccccccccccCC-CCCeeEEEeCCCCCcEEEEEcCC--------CCE
Confidence 66777777543 37888888765 11 11111110 1122334443 2 5677777643 357
Q ss_pred EEEECCCCceEecCCCCC-----CcccceEEEE-C-CEEEEEcCCCCCCCCCCcceEEE
Q 013909 200 FVLDSETRKWDSIPPLPS-----PRYSPATQLW-R-GRLHVMGGSKENRHTPGLEHWSI 251 (434)
Q Consensus 200 ~~yd~~t~~W~~~~~~p~-----~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~ 251 (434)
..||..+.+-...-..+. ...-.+++.. + .++++.|+.++. ...+.+|++
T Consensus 191 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--~~~i~~~d~ 247 (416)
T 2pm9_A 191 SIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN--DPSILIWDL 247 (416)
T ss_dssp EEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS--SCCCCEEET
T ss_pred EEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC--CceEEEEeC
Confidence 889998876543322221 1111222222 2 356777655431 125677773
No 83
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=95.64 E-value=0.12 Score=48.13 Aligned_cols=157 Identities=9% Similarity=0.149 Sum_probs=79.2
Q ss_pred CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcc-cceEEE--ECCEEEEEcCCCCCCCCCCcceEEEEee
Q 013909 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRY-SPATQL--WRGRLHVMGGSKENRHTPGLEHWSIAVK 254 (434)
Q Consensus 178 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~-~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 254 (434)
++++++.||.+ ..+.+||..+.+|.....+..... ....+. -+++.++.|+.+ ..+.+|++
T Consensus 27 ~g~~las~~~D--------~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D-----~~v~iw~~--- 90 (345)
T 3fm0_A 27 AGTLLASCGGD--------RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD-----ATTCIWKK--- 90 (345)
T ss_dssp TSSCEEEEETT--------SCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT-----SCEEEEEE---
T ss_pred CCCEEEEEcCC--------CeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC-----CcEEEEEc---
Confidence 56677777743 346778887777753322211111 111222 256677777654 34567774
Q ss_pred ccccccCceEEccCCCCCCCceeEEEE--CCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-C-CCCeEEcC
Q 013909 255 DGKALEKAWRTEIPIPRGGPHRACFVF--NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-D-EMKWKVLP 330 (434)
Q Consensus 255 ~~~~~~~~W~~~~~~p~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~-~~~W~~~~ 330 (434)
.+..+..+..+......-..+.+ ++++++.|+.++. +..+| . ...+..+.
T Consensus 91 ----~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~----------------------v~iwd~~~~~~~~~~~ 144 (345)
T 3fm0_A 91 ----NQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKS----------------------VWVWEVDEEDEYECVS 144 (345)
T ss_dssp ----CCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC----------------------EEEEEECTTSCEEEEE
T ss_pred ----cCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCe----------------------EEEEECCCCCCeEEEE
Confidence 23444333322211111122222 6778888887653 56666 3 33444332
Q ss_pred CCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccC
Q 013909 331 PMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKL 388 (434)
Q Consensus 331 ~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~l 388 (434)
.+..........+...++++++.|+.++ .+.+||..+..|..+..+
T Consensus 145 ~~~~h~~~v~~~~~~p~~~~l~s~s~d~------------~i~~w~~~~~~~~~~~~~ 190 (345)
T 3fm0_A 145 VLNSHTQDVKHVVWHPSQELLASASYDD------------TVKLYREEEDDWVCCATL 190 (345)
T ss_dssp EECCCCSCEEEEEECSSSSCEEEEETTS------------CEEEEEEETTEEEEEEEE
T ss_pred EecCcCCCeEEEEECCCCCEEEEEeCCC------------cEEEEEecCCCEEEEEEe
Confidence 2222112112111223567777777553 578889888888765444
No 84
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=95.54 E-value=0.95 Score=43.53 Aligned_cols=104 Identities=12% Similarity=0.148 Sum_probs=52.7
Q ss_pred EEEECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEE
Q 013909 124 AIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLD 203 (434)
Q Consensus 124 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd 203 (434)
+...++.+++.|+.++ .+.+||..+.+-... +... ...-.+++...+.+++.|+.+ ..+..+|
T Consensus 127 ~~~~~~~~l~sgs~dg------~i~vwd~~~~~~~~~--~~~h-~~~V~~l~~~~~~~l~s~s~d--------g~i~vwd 189 (464)
T 3v7d_B 127 CLQFEDNYVITGADDK------MIRVYDSINKKFLLQ--LSGH-DGGVWALKYAHGGILVSGSTD--------RTVRVWD 189 (464)
T ss_dssp EEEEETTEEEEEETTS------CEEEEETTTTEEEEE--ECCC-SSCEEEEEECSTTEEEEEETT--------SCEEEEE
T ss_pred EEEECCCEEEEEcCCC------cEEEEECCCCcEEEE--EeCC-CcCEEEEEEcCCCEEEEEeCC--------CCEEEEE
Confidence 3445666777776553 388899888763221 1110 112233444433366666643 3577889
Q ss_pred CCCCceEecCC-CCCCcccceEEEE---CCEEEEEcCCCCCCCCCCcceEEE
Q 013909 204 SETRKWDSIPP-LPSPRYSPATQLW---RGRLHVMGGSKENRHTPGLEHWSI 251 (434)
Q Consensus 204 ~~t~~W~~~~~-~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~ 251 (434)
..+.+-...-. -..+. .++... ++++++.|+.++ .+..|++
T Consensus 190 ~~~~~~~~~~~~h~~~v--~~l~~~~~~~~~~l~s~s~d~-----~i~vwd~ 234 (464)
T 3v7d_B 190 IKKGCCTHVFEGHNSTV--RCLDIVEYKNIKYIVTGSRDN-----TLHVWKL 234 (464)
T ss_dssp TTTTEEEEEECCCSSCE--EEEEEEESSSCEEEEEEETTS-----CEEEEEC
T ss_pred CCCCcEEEEECCCCCcc--EEEEEecCCCCCEEEEEcCCC-----cEEEeeC
Confidence 88775432211 11111 112222 457777776543 4455653
No 85
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=95.52 E-value=0.75 Score=42.25 Aligned_cols=142 Identities=5% Similarity=0.060 Sum_probs=62.2
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCC-CCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKD-MAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~-~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~ 205 (434)
.+ +++.|+.++ .+.+||..++....+..+... ....-.+++.. ++.+++.|+.++ .+.+||..
T Consensus 24 ~~-~las~~~D~------~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~--------~v~iw~~~ 88 (330)
T 2hes_X 24 QG-ILATGSTDR------KIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS--------TVSIWAKE 88 (330)
T ss_dssp TT-EEEEEESSS------CEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS--------CEEEEEC-
T ss_pred CC-EEEEEcCCC------EEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC--------cEEEEEcc
Confidence 44 666666542 377888887655433222110 01112233332 566777777533 45667764
Q ss_pred CC-----ceEecCCCCCCcccceEEEE--CCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeE
Q 013909 206 TR-----KWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRAC 278 (434)
Q Consensus 206 t~-----~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~ 278 (434)
.. .+..+..+.........+.+ +++.++.|+.+ ..+.+|++. .....+..+..+......-..
T Consensus 89 ~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D-----~~v~iwd~~-----~~~~~~~~~~~~~~h~~~v~~ 158 (330)
T 2hes_X 89 ESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRD-----KSVWIWETD-----ESGEEYECISVLQEHSQDVKH 158 (330)
T ss_dssp ------CCCEEEEEEC----CEEEEEECTTSCEEEEEETT-----SCEEEEECC-----TTCCCCEEEEEECCCSSCEEE
T ss_pred cCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCC-----CEEEEEecc-----CCCCCeEEEEEeccCCCceEE
Confidence 32 12222111111111111222 56666776654 356677641 112334333222211111122
Q ss_pred EEE--CCEEEEEcCCCCC
Q 013909 279 FVF--NDRLFVVGGQEGD 294 (434)
Q Consensus 279 ~~~--~~~iyv~GG~~~~ 294 (434)
+.+ ++.+++.|+.++.
T Consensus 159 v~~~p~~~~l~s~s~D~~ 176 (330)
T 2hes_X 159 VIWHPSEALLASSSYDDT 176 (330)
T ss_dssp EEECSSSSEEEEEETTSC
T ss_pred EEECCCCCEEEEEcCCCe
Confidence 222 6778888887653
No 86
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=95.50 E-value=2.9 Score=43.59 Aligned_cols=242 Identities=8% Similarity=0.034 Sum_probs=119.4
Q ss_pred cceeeccCCCCcEEEcCCCC-----CC---CCceeEEEE-CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCC
Q 013909 97 ATFADLPAPDLEWEQMPSAP-----VP---RLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167 (434)
Q Consensus 97 ~~~~~~~~~~~~W~~~~~~p-----~~---R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~ 167 (434)
.-+..+++....++.....+ .. ..-.+++.- ++.||+-. .. . -+.+||+.++++..... +...
T Consensus 333 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt-~~-~-----Gl~~~~~~~~~~~~~~~-~~~~ 404 (781)
T 3v9f_A 333 GGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGT-DG-G-----GINVFENGKRVAIYNKE-NREL 404 (781)
T ss_dssp SCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEE-BS-S-----CEEEEETTEEEEECC------C
T ss_pred CeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEe-CC-C-----cEEEEECCCCeEEEccC-CCCC
Confidence 35677777766665543211 11 111222222 46788642 11 1 27889999888776531 1111
Q ss_pred -CceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCC-cccceEEEE-CCEEEEEcCCCCCCCC
Q 013909 168 -AHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSP-RYSPATQLW-RGRLHVMGGSKENRHT 243 (434)
Q Consensus 168 -~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~-r~~~~~~~~-~~~iyv~GG~~~~~~~ 243 (434)
...-.+++.. ++.|++ |.. ..-+++||+.+.+++.......+ ..-.+++.. ++.|++... .
T Consensus 405 ~~~~v~~i~~d~~g~lWi-gt~--------~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~----- 469 (781)
T 3v9f_A 405 LSNSVLCSLKDSEGNLWF-GTY--------LGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-A----- 469 (781)
T ss_dssp CCSBEEEEEECTTSCEEE-EET--------TEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-T-----
T ss_pred CCcceEEEEECCCCCEEE-Eec--------cCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-C-----
Confidence 1223344443 677887 321 14688999999999887532111 111222222 577887532 1
Q ss_pred CCcceEEEEeeccccccCceEEccCCC---C-CCCceeEEE-ECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEE
Q 013909 244 PGLEHWSIAVKDGKALEKAWRTEIPIP---R-GGPHRACFV-FNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVY 318 (434)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~W~~~~~~p---~-~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 318 (434)
-+.+|+ +.+.+|+.....+ . ...-.+++. .++.||+-.-.. -++
T Consensus 470 -Gl~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~-----------------------Gl~ 518 (781)
T 3v9f_A 470 -GVFVID-------LASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGG-----------------------GVG 518 (781)
T ss_dssp -EEEEEE-------SSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSS-----------------------CEE
T ss_pred -ceEEEe-------CCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCC-----------------------CEE
Confidence 133344 6677776543222 1 111112222 267787743211 288
Q ss_pred EeC-CCCCeEEcCCC-CCCCCccceeEEE-ECCEEEEEcCcCCCCCCccceeeeccE-EEEECCCCceEEecc---CCCc
Q 013909 319 MLD-DEMKWKVLPPM-PKPNSHIECAWVI-VNNSIIITGGTTEKHPMTKRMILVGEV-FQFHLDSLTWSVIGK---LPYR 391 (434)
Q Consensus 319 ~yd-~~~~W~~~~~~-p~~r~~~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~v-~~yd~~~~~W~~~~~---lp~~ 391 (434)
+|| .+.+++..... ..+.... .+++. .++.|++-.. . -+ .+||+++++++.... +|..
T Consensus 519 ~~~~~~~~~~~~~~~~~l~~~~i-~~i~~d~~g~lWi~T~-~-------------Glv~~~d~~~~~~~~~~~~~gl~~~ 583 (781)
T 3v9f_A 519 IYTPDMQLVRKFNQYEGFCSNTI-NQIYRSSKGQMWLATG-E-------------GLVCFPSARNFDYQVFQRKEGLPNT 583 (781)
T ss_dssp EECTTCCEEEEECTTTTCSCSCE-EEEEECTTSCEEEEET-T-------------EEEEESCTTTCCCEEECGGGTCSCC
T ss_pred EEeCCCCeEEEccCCCCCCCCee-EEEEECCCCCEEEEEC-C-------------CceEEECCCCCcEEEccccCCCCCc
Confidence 999 66677776421 1111111 12222 3567776432 1 35 889999998887642 4433
Q ss_pred eeeeeeEE-ECCEEEEEc
Q 013909 392 IKTTLTGF-WDGWLYFTS 408 (434)
Q Consensus 392 r~~~~~~~-~~~~l~v~G 408 (434)
... +++. -++.|++.+
T Consensus 584 ~i~-~i~~d~~g~lW~~t 600 (781)
T 3v9f_A 584 HIR-AISEDKNGNIWAST 600 (781)
T ss_dssp CCC-EEEECSSSCEEEEC
T ss_pred eEE-EEEECCCCCEEEEc
Confidence 322 2222 356676654
No 87
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=95.49 E-value=0.5 Score=45.22 Aligned_cols=204 Identities=8% Similarity=-0.016 Sum_probs=98.5
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
+.++...+...+. .....++++|.....-..+..... .-.+.+.. +++.+++++.+.. ...++.+|+.+
T Consensus 143 ~~~l~~~s~~~~~-~~~~~i~i~d~~g~~~~~l~~~~~----~v~~~~~Spdg~~la~~s~~~~-----~~~i~~~d~~t 212 (415)
T 2hqs_A 143 RTRIAYVVQTNGG-QFPYELRVSDYDGYNQFVVHRSPQ----PLMSPAWSPDGSKLAYVTFESG-----RSALVIQTLAN 212 (415)
T ss_dssp TCEEEEEEECSSS-SCCEEEEEEETTSCSCEEEEEESS----CEEEEEECTTSSEEEEEECTTS-----SCEEEEEETTT
T ss_pred CCEEEEEEecCCC-CccceEEEEcCCCCCCEEEeCCCC----cceeeEEcCCCCEEEEEEecCC-----CcEEEEEECCC
Confidence 4455444433222 122569999988655444332111 11223332 5555555554321 25899999999
Q ss_pred CceEecCCCCCCcccceEEE-ECCE-EEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEE--C
Q 013909 207 RKWDSIPPLPSPRYSPATQL-WRGR-LHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVF--N 282 (434)
Q Consensus 207 ~~W~~~~~~p~~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~--~ 282 (434)
.+...+...+.. ..+.+. -+++ |++.+..++ ...+..|+ ..+.+...+...+.. .....+ +
T Consensus 213 g~~~~l~~~~~~--~~~~~~spdg~~la~~~~~~g---~~~i~~~d-------~~~~~~~~l~~~~~~---~~~~~~spd 277 (415)
T 2hqs_A 213 GAVRQVASFPRH--NGAPAFSPDGSKLAFALSKTG---SLNLYVMD-------LASGQIRQVTDGRSN---NTEPTWFPD 277 (415)
T ss_dssp CCEEEEECCSSC--EEEEEECTTSSEEEEEECTTS---SCEEEEEE-------TTTCCEEECCCCSSC---EEEEEECTT
T ss_pred CcEEEeecCCCc--ccCEEEcCCCCEEEEEEecCC---CceEEEEE-------CCCCCEEeCcCCCCc---ccceEECCC
Confidence 887766443321 112222 2444 554544322 12233344 445554444332211 122222 5
Q ss_pred CEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCC
Q 013909 283 DRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHP 361 (434)
Q Consensus 283 ~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~ 361 (434)
++.+++++.... ...++.+| .+.+-+.+.... ..........+++.+++++.+...
T Consensus 278 g~~l~~~s~~~g-------------------~~~i~~~d~~~~~~~~l~~~~---~~~~~~~~spdG~~l~~~~~~~g~- 334 (415)
T 2hqs_A 278 SQNLAFTSDQAG-------------------RPQVYKVNINGGAPQRITWEG---SQNQDADVSSDGKFMVMVSSNGGQ- 334 (415)
T ss_dssp SSEEEEEECTTS-------------------SCEEEEEETTSSCCEECCCSS---SEEEEEEECTTSSEEEEEEECSSC-
T ss_pred CCEEEEEECCCC-------------------CcEEEEEECCCCCEEEEecCC---CcccCeEECCCCCEEEEEECcCCc-
Confidence 665555543221 12488888 555544443211 111111133466666666543221
Q ss_pred CccceeeeccEEEEECCCCceEEecc
Q 013909 362 MTKRMILVGEVFQFHLDSLTWSVIGK 387 (434)
Q Consensus 362 ~~~~~~~~~~v~~yd~~~~~W~~~~~ 387 (434)
..++++|+++.+...+..
T Consensus 335 --------~~i~~~d~~~~~~~~l~~ 352 (415)
T 2hqs_A 335 --------QHIAKQDLATGGVQVLSS 352 (415)
T ss_dssp --------EEEEEEETTTCCEEECCC
T ss_pred --------eEEEEEECCCCCEEEecC
Confidence 379999999998876643
No 88
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=95.33 E-value=1.4 Score=39.07 Aligned_cols=220 Identities=10% Similarity=-0.006 Sum_probs=103.2
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCC--CCCceeeEEEE--eCCEEEEEeccCCCCCCCCCceeEEEE
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK--DMAHSHLGVVS--DGRYIYIVSGQYGPQCRGPTSRTFVLD 203 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~--~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~yd 203 (434)
++.+|+....+ ..+.+||+....-..+..... .....-.++++ .++.||+.+... ...+.+||
T Consensus 40 ~g~l~v~~~~~------~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~-------~~~i~~~d 106 (286)
T 1q7f_A 40 QNDIIVADTNN------HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP-------THQIQIYN 106 (286)
T ss_dssp TCCEEEEEGGG------TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG-------GCEEEEEC
T ss_pred CCCEEEEECCC------CEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC-------CCEEEEEC
Confidence 56788875432 348899988654444332110 00122345555 368999886321 24688899
Q ss_pred CCCCceEecCCCCCCcccceEEE-ECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEE-
Q 013909 204 SETRKWDSIPPLPSPRYSPATQL-WRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVF- 281 (434)
Q Consensus 204 ~~t~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~- 281 (434)
+....-..+...... .-..++. -++++|+..... ..+.+|+ +..................+++..
T Consensus 107 ~~g~~~~~~~~~~~~-~~~~i~~~~~g~l~v~~~~~-----~~i~~~~-------~~g~~~~~~~~~~~~~~p~~i~~~~ 173 (286)
T 1q7f_A 107 QYGQFVRKFGATILQ-HPRGVTVDNKGRIIVVECKV-----MRVIIFD-------QNGNVLHKFGCSKHLEFPNGVVVND 173 (286)
T ss_dssp TTSCEEEEECTTTCS-CEEEEEECTTSCEEEEETTT-----TEEEEEC-------TTSCEEEEEECTTTCSSEEEEEECS
T ss_pred CCCcEEEEecCccCC-CceEEEEeCCCCEEEEECCC-----CEEEEEc-------CCCCEEEEeCCCCccCCcEEEEECC
Confidence 655443333221111 1122332 357888875432 1233332 323222222111111111123322
Q ss_pred CCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEE-ECCEEEEEcCcCCC
Q 013909 282 NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVI-VNNSIIITGGTTEK 359 (434)
Q Consensus 282 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~-~~~~i~v~GG~~~~ 359 (434)
++++|+....+ +.+++|| .......+..... .... .++++ .+++||+....+.
T Consensus 174 ~g~l~v~~~~~----------------------~~i~~~~~~g~~~~~~~~~g~-~~~p-~~i~~d~~G~l~v~~~~~~- 228 (286)
T 1q7f_A 174 KQEIFISDNRA----------------------HCVKVFNYEGQYLRQIGGEGI-TNYP-IGVGINSNGEILIADNHNN- 228 (286)
T ss_dssp SSEEEEEEGGG----------------------TEEEEEETTCCEEEEESCTTT-SCSE-EEEEECTTCCEEEEECSSS-
T ss_pred CCCEEEEECCC----------------------CEEEEEcCCCCEEEEEccCCc-cCCC-cEEEECCCCCEEEEeCCCC-
Confidence 68899876532 2488888 4333333322100 0111 12233 4678888764321
Q ss_pred CCCccceeeeccEEEEECCCCceEEecc-CCCceeeeeeEEECCEEEEEc
Q 013909 360 HPMTKRMILVGEVFQFHLDSLTWSVIGK-LPYRIKTTLTGFWDGWLYFTS 408 (434)
Q Consensus 360 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~-lp~~r~~~~~~~~~~~l~v~G 408 (434)
..+.+||++...-..+.. .+.......+..-+++||+..
T Consensus 229 ----------~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~ 268 (286)
T 1q7f_A 229 ----------FNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLAS 268 (286)
T ss_dssp ----------CEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEEE
T ss_pred ----------EEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEEC
Confidence 158899977654444422 221111122223477888874
No 89
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=95.32 E-value=1.4 Score=39.01 Aligned_cols=240 Identities=9% Similarity=0.025 Sum_probs=114.9
Q ss_pred ceeeccCCCCcEEEcCCCCCCCCceeEEE-ECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEE
Q 013909 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQ-IKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS 176 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~ 176 (434)
.+..+|+. .++...........-++++. -++.+|+..... ..+.+||+. ++...+. ++.. ...-+++++
T Consensus 37 ~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~------~~i~~~~~~-g~~~~~~-~~~~-~~~~~~i~~ 106 (299)
T 2z2n_A 37 MISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAA------NKIGRITKK-GIIKEYT-LPNP-DSAPYGITE 106 (299)
T ss_dssp EEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTT------TEEEEECTT-SCEEEEE-CSST-TCCEEEEEE
T ss_pred cEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCC------CeEEEECCC-CcEEEEe-CCCc-CCCceeeEE
Confidence 57777777 66655432111112223333 256888875322 248889987 4554443 2211 123345555
Q ss_pred e-CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEE-CCEEEEEcCCCCCCCCCCcceEEEEee
Q 013909 177 D-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW-RGRLHVMGGSKENRHTPGLEHWSIAVK 254 (434)
Q Consensus 177 ~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~ 254 (434)
. ++.||+.... ...+.+||+ +.+............-..++.. ++++|+..-.. ..+..|+
T Consensus 107 ~~~g~l~v~~~~--------~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~---- 168 (299)
T 2z2n_A 107 GPNGDIWFTEMN--------GNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQN-----NAIGRIT---- 168 (299)
T ss_dssp CTTSCEEEEETT--------TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTT-----TEEEEEC----
T ss_pred CCCCCEEEEecC--------CceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCC-----CEEEEEc----
Confidence 4 5789986532 256888998 5555543211111112233332 56888864211 1222222
Q ss_pred ccccccCceEEccCCCCCCCce-eEEEE-CCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeCCCCCeEEcCCC
Q 013909 255 DGKALEKAWRTEIPIPRGGPHR-ACFVF-NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDDEMKWKVLPPM 332 (434)
Q Consensus 255 ~~~~~~~~W~~~~~~p~~~~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~W~~~~~~ 332 (434)
+ +.+.... ..+...... +++.. ++++|+.....+ .+.+||.+.+..... +
T Consensus 169 ---~-~g~~~~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~----------------------~i~~~~~~g~~~~~~-~ 220 (299)
T 2z2n_A 169 ---E-SGDITEF-KIPTPASGPVGITKGNDDALWFVEIIGN----------------------KIGRITTSGEITEFK-I 220 (299)
T ss_dssp ---T-TCCEEEE-ECSSTTCCEEEEEECTTSSEEEEETTTT----------------------EEEEECTTCCEEEEE-C
T ss_pred ---C-CCcEEEe-eCCCCCCcceeEEECCCCCEEEEccCCc----------------------eEEEECCCCcEEEEE-C
Confidence 4 4444432 112111112 33332 577888754321 388888644555432 2
Q ss_pred CCCCCccceeEEE-ECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccCCCce-eeeeeEEECCEEEEEc
Q 013909 333 PKPNSHIECAWVI-VNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKLPYRI-KTTLTGFWDGWLYFTS 408 (434)
Q Consensus 333 p~~r~~~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r-~~~~~~~~~~~l~v~G 408 (434)
+.+..... +++. .+++||+....+ +.+.+||+ +.+...+. ++... .-.+++..+++||+..
T Consensus 221 ~~~~~~~~-~i~~~~~g~l~v~~~~~------------~~i~~~d~-~g~~~~~~-~~~~~~~~~~i~~~~g~l~v~~ 283 (299)
T 2z2n_A 221 PTPNARPH-AITAGAGIDLWFTEWGA------------NKIGRLTS-NNIIEEYP-IQIKSAEPHGICFDGETIWFAM 283 (299)
T ss_dssp SSTTCCEE-EEEECSTTCEEEEETTT------------TEEEEEET-TTEEEEEE-CSSSSCCEEEEEECSSCEEEEE
T ss_pred CCCCCCce-eEEECCCCCEEEeccCC------------ceEEEECC-CCceEEEe-CCCCCCccceEEecCCCEEEEe
Confidence 21112222 2233 356888764211 26889998 45554442 22211 1223333567888764
No 90
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=95.20 E-value=1.1 Score=41.68 Aligned_cols=105 Identities=11% Similarity=-0.028 Sum_probs=54.2
Q ss_pred EEECCEEEEEeccCCCCCceeeEEEEECCCCc-------eEecCCCCCCCCceeeEEEEe-C----C---EEEEEeccCC
Q 013909 125 IQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK-------WVDRFDMPKDMAHSHLGVVSD-G----R---YIYIVSGQYG 189 (434)
Q Consensus 125 ~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~-------W~~~~~~~~~~~r~~~~~~~~-~----~---~lyv~GG~~~ 189 (434)
+.....+++.|+.++ .+.+||..+.+ -..+..... .-.+++.. + + .+++.|+.+
T Consensus 22 ~~~~~~~l~s~~~dg------~i~iw~~~~~~~~~~~~~~~~~~~h~~----~v~~~~~~~~~~~~g~~~~~l~s~~~d- 90 (397)
T 1sq9_A 22 VSACNSFTVSCSGDG------YLKVWDNKLLDNENPKDKSYSHFVHKS----GLHHVDVLQAIERDAFELCLVATTSFS- 90 (397)
T ss_dssp EEECSSEEEEEETTS------EEEEEESBCCTTCCGGGGEEEEECCTT----CEEEEEEEEEEETTTEEEEEEEEEETT-
T ss_pred EEecCCeEEEEcCCC------EEEEEECCCcccccCCCcceEEecCCC----cEEEEEEecccccCCccccEEEEEcCC-
Confidence 334446777776542 47888888766 222222111 11233332 3 5 777777743
Q ss_pred CCCCCCCceeEEEECCCCc------eEecCCCCCC---cccceEEEE-----CCEE-EEEcCCCCCCCCCCcceEEEE
Q 013909 190 PQCRGPTSRTFVLDSETRK------WDSIPPLPSP---RYSPATQLW-----RGRL-HVMGGSKENRHTPGLEHWSIA 252 (434)
Q Consensus 190 ~~~~~~~~~~~~yd~~t~~------W~~~~~~p~~---r~~~~~~~~-----~~~i-yv~GG~~~~~~~~~~~~~~~~ 252 (434)
..+.+||..+.+ +..+...+.. ..-.+++.. +++. ++.|+.+ ..+.+|++.
T Consensus 91 -------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~ 156 (397)
T 1sq9_A 91 -------GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK-----GTTYIWKFH 156 (397)
T ss_dssp -------SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT-----SCEEEEEEE
T ss_pred -------CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC-----CcEEEEeCC
Confidence 356778877665 6665443311 111222222 4555 7776654 356777764
No 91
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.16 E-value=0.37 Score=50.22 Aligned_cols=65 Identities=14% Similarity=0.062 Sum_probs=36.7
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEec-CCCCCCCCceeeEEEE-eCCEEEEEeccCCCCCCCCCceeEEEECC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDR-FDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~-~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~~ 205 (434)
++..+++|+.+ ..+.+||..+++.... ..... . -.+++. -++..+++|+.+ ..+.+||..
T Consensus 24 ~~~~la~~~~~------g~v~iwd~~~~~~~~~~~~~~~---~-v~~~~~s~~~~~l~~~~~d--------g~i~vw~~~ 85 (814)
T 3mkq_A 24 TEPWVLTTLYS------GRVEIWNYETQVEVRSIQVTET---P-VRAGKFIARKNWIIVGSDD--------FRIRVFNYN 85 (814)
T ss_dssp SSSEEEEEETT------SEEEEEETTTTEEEEEEECCSS---C-EEEEEEEGGGTEEEEEETT--------SEEEEEETT
T ss_pred CCCEEEEEeCC------CEEEEEECCCCceEEEEecCCC---c-EEEEEEeCCCCEEEEEeCC--------CeEEEEECC
Confidence 45566666643 2488899888764332 21111 1 122333 355566666642 468889988
Q ss_pred CCceE
Q 013909 206 TRKWD 210 (434)
Q Consensus 206 t~~W~ 210 (434)
+.+..
T Consensus 86 ~~~~~ 90 (814)
T 3mkq_A 86 TGEKV 90 (814)
T ss_dssp TCCEE
T ss_pred CCcEE
Confidence 87653
No 92
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=95.06 E-value=0.74 Score=41.18 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=11.5
Q ss_pred cEEEEECCCCceEEec
Q 013909 371 EVFQFHLDSLTWSVIG 386 (434)
Q Consensus 371 ~v~~yd~~~~~W~~~~ 386 (434)
.+.+||++++++....
T Consensus 288 ~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 288 LVRIFSQEKSRWASED 303 (313)
T ss_dssp CEEEEESCGGGCCC--
T ss_pred cEEEEeCCCCceeehh
Confidence 6889999988875543
No 93
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=95.03 E-value=0.37 Score=44.90 Aligned_cols=134 Identities=11% Similarity=0.003 Sum_probs=62.3
Q ss_pred ceeeccCCCCcEEEcCCCCCCCCceeEEEE--CCEEEEEeccCCCCCceeeEEEEECCCCc-eEecCCCCCCCCceeeEE
Q 013909 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNK-WVDRFDMPKDMAHSHLGV 174 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~~~~~~r~~~~~ 174 (434)
.+..++..++.|+.+..+.........+.. ++.+++.|+.++ .+.+||..+.+ |.....+... ...-.++
T Consensus 34 ~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~------~v~vwd~~~~~~~~~~~~~~~~-~~~v~~~ 106 (377)
T 3dwl_C 34 QVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDR------NAYVYEKRPDGTWKQTLVLLRL-NRAATFV 106 (377)
T ss_dssp CBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTS------SEEEC------CCCCEEECCCC-SSCEEEE
T ss_pred EEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCC------eEEEEEcCCCCceeeeeEeccc-CCceEEE
Confidence 566677777777777666544333333333 567777777543 37888888876 5433222211 1122233
Q ss_pred EEe-CCEEEEEeccCCCCCCCCCceeEEEECCCCc-eEecCCCCC--CcccceEEEE-CCEEEEEcCCCCCCCCCCcceE
Q 013909 175 VSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRK-WDSIPPLPS--PRYSPATQLW-RGRLHVMGGSKENRHTPGLEHW 249 (434)
Q Consensus 175 ~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~-W~~~~~~p~--~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~ 249 (434)
+.. ++++++.|+.+ ..+..||..+.+ |.....+.. ...-.+++.. ++++++.|+.+ ..+.+|
T Consensus 107 ~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-----~~i~iw 173 (377)
T 3dwl_C 107 RWSPNEDKFAVGSGA--------RVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD-----RKAYVL 173 (377)
T ss_dssp ECCTTSSCCEEEESS--------SCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESS-----SCEEEE
T ss_pred EECCCCCEEEEEecC--------CeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCC-----CEEEEE
Confidence 332 55666666643 346677776654 322222222 1111122222 55677777654 346677
Q ss_pred EE
Q 013909 250 SI 251 (434)
Q Consensus 250 ~~ 251 (434)
++
T Consensus 174 d~ 175 (377)
T 3dwl_C 174 SA 175 (377)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 94
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=94.99 E-value=1.9 Score=38.67 Aligned_cols=64 Identities=11% Similarity=0.137 Sum_probs=35.0
Q ss_pred CEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeC---CEEEEEeccCCCCCCCCCceeEEEECC
Q 013909 129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDG---RYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (434)
Q Consensus 129 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~---~~lyv~GG~~~~~~~~~~~~~~~yd~~ 205 (434)
+.+++.|+.++ .+.++|+.+++|..+..+... ...-.+++... +.+++.|+.+ ..+..||..
T Consensus 67 g~~l~s~s~D~------~v~iWd~~~~~~~~~~~~~~h-~~~v~~v~~~p~~~g~~l~s~s~d--------~~v~~wd~~ 131 (297)
T 2pm7_B 67 GTILASCSYDG------KVMIWKEENGRWSQIAVHAVH-SASVNSVQWAPHEYGPMLLVASSD--------GKVSVVEFK 131 (297)
T ss_dssp CSEEEEEETTT------EEEEEEBSSSCBCCCEEECCC-SSCEEEEEECCGGGCSEEEEEETT--------SEEEEEEBC
T ss_pred CCEEEEEcCCC------EEEEEEcCCCceEEEEEeecC-CCceeEEEeCcCCCCcEEEEEECC--------CcEEEEEec
Confidence 56777777653 478889988877654332210 11122333321 4566666643 356677766
Q ss_pred CC
Q 013909 206 TR 207 (434)
Q Consensus 206 t~ 207 (434)
+.
T Consensus 132 ~~ 133 (297)
T 2pm7_B 132 EN 133 (297)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 95
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=94.97 E-value=1.4 Score=44.16 Aligned_cols=100 Identities=16% Similarity=0.239 Sum_probs=58.8
Q ss_pred eeEEEECCEEEEEeccCCCCCceeeEEEEEC-CCCc--eEecCCCCCCC---C---ceeeEEEEeCCEEEEEeccCCCCC
Q 013909 122 GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNF-TDNK--WVDRFDMPKDM---A---HSHLGVVSDGRYIYIVSGQYGPQC 192 (434)
Q Consensus 122 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~-~t~~--W~~~~~~~~~~---~---r~~~~~~~~~~~lyv~GG~~~~~~ 192 (434)
.+-++.++.||+.... ...++++|. .+.+ |+.-....... . ....+.++.+++||+...
T Consensus 56 ~~P~v~~g~vyv~~~~------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------ 123 (571)
T 2ad6_A 56 GAPLVIGDMMYVHSAF------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA------ 123 (571)
T ss_dssp SCCEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT------
T ss_pred cccEEECCEEEEEeCC------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC------
Confidence 3445679999998652 124899999 7764 98643322100 0 011235677999998633
Q ss_pred CCCCceeEEEECCCCc--eEecCCC-CCC-cccceEEEECCEEEEEcC
Q 013909 193 RGPTSRTFVLDSETRK--WDSIPPL-PSP-RYSPATQLWRGRLHVMGG 236 (434)
Q Consensus 193 ~~~~~~~~~yd~~t~~--W~~~~~~-p~~-r~~~~~~~~~~~iyv~GG 236 (434)
...++.+|.++.+ |+.-..- +.. ....+-++.++++|+..+
T Consensus 124 ---dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~ 168 (571)
T 2ad6_A 124 ---NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCS 168 (571)
T ss_dssp ---TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECB
T ss_pred ---CCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEec
Confidence 2578999998774 8754221 111 112233456888887654
No 96
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=94.94 E-value=0.32 Score=44.79 Aligned_cols=63 Identities=5% Similarity=-0.027 Sum_probs=38.2
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEE---eCCEEEEEeccCCCCCCCCCceeEEEEC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS---DGRYIYIVSGQYGPQCRGPTSRTFVLDS 204 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~---~~~~lyv~GG~~~~~~~~~~~~~~~yd~ 204 (434)
++..++.|+.++ .+.+||..+.+-........ .-.+++. .++.+++.|+.+ ..+..||.
T Consensus 97 ~~~~l~s~~~dg------~v~iwd~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~l~~~~~d--------g~i~vwd~ 158 (368)
T 3mmy_A 97 DGSKVFTASCDK------TAKMWDLSSNQAIQIAQHDA----PVKTIHWIKAPNYSCVMTGSWD--------KTLKFWDT 158 (368)
T ss_dssp TSSEEEEEETTS------EEEEEETTTTEEEEEEECSS----CEEEEEEEECSSCEEEEEEETT--------SEEEEECS
T ss_pred CCCEEEEEcCCC------cEEEEEcCCCCceeeccccC----ceEEEEEEeCCCCCEEEEccCC--------CcEEEEEC
Confidence 566666776542 48889999887655432222 1223333 356777777743 45788888
Q ss_pred CCCc
Q 013909 205 ETRK 208 (434)
Q Consensus 205 ~t~~ 208 (434)
.+.+
T Consensus 159 ~~~~ 162 (368)
T 3mmy_A 159 RSSN 162 (368)
T ss_dssp SCSS
T ss_pred CCCc
Confidence 7654
No 97
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=94.94 E-value=0.85 Score=41.26 Aligned_cols=102 Identities=14% Similarity=0.164 Sum_probs=49.9
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~ 207 (434)
++.+++.|+.++ .+.++|..+.+-...-.... ..........++++++.|+.+ ..+.+||..+.
T Consensus 24 ~~~~l~s~~~dg------~v~lWd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~s~d--------~~i~vwd~~~~ 87 (304)
T 2ynn_A 24 TEPWVLTTLYSG------RVELWNYETQVEVRSIQVTE--TPVRAGKFIARKNWIIVGSDD--------FRIRVFNYNTG 87 (304)
T ss_dssp SSSEEEEEETTS------EEEEEETTTTEEEEEEECCS--SCEEEEEEEGGGTEEEEEETT--------SEEEEEETTTC
T ss_pred CCCEEEEEcCCC------cEEEEECCCCceeEEeeccC--CcEEEEEEeCCCCEEEEECCC--------CEEEEEECCCC
Confidence 566777777552 47888988875432111111 111122223355566666643 46778888776
Q ss_pred ceEecCCCCCCcccceEEE-ECCEEEEEcCCCCCCCCCCcceEEE
Q 013909 208 KWDSIPPLPSPRYSPATQL-WRGRLHVMGGSKENRHTPGLEHWSI 251 (434)
Q Consensus 208 ~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~ 251 (434)
+-...-.. ....-.+++. -++++++.|+.+ ..+.+|++
T Consensus 88 ~~~~~~~~-h~~~v~~~~~~~~~~~l~sgs~D-----~~v~lWd~ 126 (304)
T 2ynn_A 88 EKVVDFEA-HPDYIRSIAVHPTKPYVLSGSDD-----LTVKLWNW 126 (304)
T ss_dssp CEEEEEEC-CSSCEEEEEECSSSSEEEEEETT-----SCEEEEEG
T ss_pred cEEEEEeC-CCCcEEEEEEcCCCCEEEEECCC-----CeEEEEEC
Confidence 53221000 1111112222 245566666654 35667773
No 98
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=94.91 E-value=0.67 Score=40.88 Aligned_cols=186 Identities=10% Similarity=-0.011 Sum_probs=91.9
Q ss_pred eeeEEEEECCCCceEecCCCCCCCCceeeEEEE-eCCEEEEEeccCCCCCCCCCceeEEEECCC-CceEecCCCCC-Ccc
Q 013909 144 HSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSET-RKWDSIPPLPS-PRY 220 (434)
Q Consensus 144 ~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t-~~W~~~~~~p~-~r~ 220 (434)
...++++|+.+++...+..... .-.+++. -+++.+++++ ...++++|+.+ .+...+...+. ...
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~~~----~v~~~~~spdg~~l~~~~---------~~~i~~~d~~~~~~~~~~~~~~~~~~~ 87 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQTPE----LFEAPNWSPDGKYLLLNS---------EGLLYRLSLAGDPSPEKVDTGFATICN 87 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEESS----CCEEEEECTTSSEEEEEE---------TTEEEEEESSSCCSCEECCCTTCCCBC
T ss_pred ceeEEEEeCCCCceeeeccCCc----ceEeeEECCCCCEEEEEc---------CCeEEEEeCCCCCCceEeccccccccc
Confidence 3569999999988765543322 1123333 2555555553 14789999998 77776654332 222
Q ss_pred cceEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEE-CCE-EEEEcCCCCCCCCC
Q 013909 221 SPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVF-NDR-LFVVGGQEGDFMAK 298 (434)
Q Consensus 221 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~-~~~-iyv~GG~~~~~~~~ 298 (434)
......-+++.+++++.... ....+|.++ ..+..-..+..... ...+... +++ |++.++.++.
T Consensus 88 ~~~~~spdg~~l~~~~~~~~---~~~~l~~~~-----~~~~~~~~~~~~~~---~~~~~~spdg~~l~~~~~~~~~---- 152 (297)
T 2ojh_A 88 NDHGISPDGALYAISDKVEF---GKSAIYLLP-----STGGTPRLMTKNLP---SYWHGWSPDGKSFTYCGIRDQV---- 152 (297)
T ss_dssp SCCEECTTSSEEEEEECTTT---SSCEEEEEE-----TTCCCCEECCSSSS---EEEEEECTTSSEEEEEEEETTE----
T ss_pred cceEECCCCCEEEEEEeCCC---CcceEEEEE-----CCCCceEEeecCCC---ccceEECCCCCEEEEEECCCCc----
Confidence 22222335555555543221 234455543 33433333322221 1122222 444 4444443321
Q ss_pred CCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEEECCEEEEEcC-cCCCCCCccceeeeccEEEEE
Q 013909 299 PGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGG-TTEKHPMTKRMILVGEVFQFH 376 (434)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG-~~~~~~~~~~~~~~~~v~~yd 376 (434)
..+|.+| .+.+...+...+.. ........+++.+++.+ .+.. ..+|.++
T Consensus 153 ----------------~~l~~~~~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~~~~~~----------~~i~~~~ 203 (297)
T 2ojh_A 153 ----------------FDIYSMDIDSGVETRLTHGEGR---NDGPDYSPDGRWIYFNSSRTGQ----------MQIWRVR 203 (297)
T ss_dssp ----------------EEEEEEETTTCCEEECCCSSSC---EEEEEECTTSSEEEEEECTTSS----------CEEEEEE
T ss_pred ----------------eEEEEEECCCCcceEcccCCCc---cccceECCCCCEEEEEecCCCC----------ccEEEEC
Confidence 2477777 55566665443221 11111223555444444 3322 2688888
Q ss_pred CCCCceEEec
Q 013909 377 LDSLTWSVIG 386 (434)
Q Consensus 377 ~~~~~W~~~~ 386 (434)
+.......+.
T Consensus 204 ~~~~~~~~~~ 213 (297)
T 2ojh_A 204 VDGSSVERIT 213 (297)
T ss_dssp TTSSCEEECC
T ss_pred CCCCCcEEEe
Confidence 8777776654
No 99
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=94.85 E-value=1.2 Score=41.25 Aligned_cols=99 Identities=7% Similarity=-0.066 Sum_probs=49.5
Q ss_pred ceeeccCCCCcEEEcCCCCCCCCceeEEEE-CC-EEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEE
Q 013909 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI-KN-LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV 175 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~ 175 (434)
.++.+|..+++.+.+... ....-..++.. ++ .||+.+....... .-.+|.+|..+++.+.+...+.. ......++
T Consensus 30 ~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~-~v~~~~~~~~~g~~~~~~~~~~~-~~~p~~~~ 106 (361)
T 3scy_A 30 YTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQA-AVSAFAFDKEKGTLHLLNTQKTM-GADPCYLT 106 (361)
T ss_dssp EEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTC-EEEEEEEETTTTEEEEEEEEECS-SSCEEEEE
T ss_pred EEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCCC-cEEEEEEeCCCCcEEEeeEeccC-CCCcEEEE
Confidence 456667777777665544 22221222222 44 5766654321111 12356667776777766543321 12223334
Q ss_pred EeCCEEEEEeccCCCCCCCCCceeEEEECCCC
Q 013909 176 SDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (434)
Q Consensus 176 ~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~ 207 (434)
..++.||+.... ...+.+||..++
T Consensus 107 ~dg~~l~~~~~~--------~~~v~~~~~~~~ 130 (361)
T 3scy_A 107 TNGKNIVTANYS--------GGSITVFPIGQD 130 (361)
T ss_dssp ECSSEEEEEETT--------TTEEEEEEBCTT
T ss_pred ECCCEEEEEECC--------CCEEEEEEeCCC
Confidence 445567765431 246778887643
No 100
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=94.79 E-value=2.6 Score=39.30 Aligned_cols=66 Identities=9% Similarity=-0.142 Sum_probs=35.9
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
++++++.|+.++ .+.+||.....-..+..... .-.+++.. ++..++.|+.+ ..+..||..+
T Consensus 119 ~~~~l~~~~~dg------~i~i~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~ 180 (425)
T 1r5m_A 119 DGNSIVTGVENG------ELRLWNKTGALLNVLNFHRA----PIVSVKWNKDGTHIISMDVE--------NVTILWNVIS 180 (425)
T ss_dssp TSSEEEEEETTS------CEEEEETTSCEEEEECCCCS----CEEEEEECTTSSEEEEEETT--------CCEEEEETTT
T ss_pred CCCEEEEEeCCC------eEEEEeCCCCeeeeccCCCc----cEEEEEECCCCCEEEEEecC--------CeEEEEECCC
Confidence 566777777643 37778855444444332221 22333333 45555566532 3577888877
Q ss_pred CceEe
Q 013909 207 RKWDS 211 (434)
Q Consensus 207 ~~W~~ 211 (434)
.+...
T Consensus 181 ~~~~~ 185 (425)
T 1r5m_A 181 GTVMQ 185 (425)
T ss_dssp TEEEE
T ss_pred CcEEE
Confidence 76443
No 101
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=94.76 E-value=0.54 Score=42.62 Aligned_cols=190 Identities=11% Similarity=0.041 Sum_probs=89.8
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceE----ecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEE
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWV----DRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVL 202 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~----~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~y 202 (434)
++++++.|+ + ..+.+||..+.+.. .+..... ...-.+++.. +++.++.|+.+ ..+..|
T Consensus 62 ~~~~l~~~~-d------g~i~iw~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d--------~~i~~~ 124 (337)
T 1gxr_A 62 PTRHVYTGG-K------GCVKVWDISHPGNKSPVSQLDCLNR--DNYIRSCKLLPDGCTLIVGGEA--------STLSIW 124 (337)
T ss_dssp SSSEEEEEC-B------SEEEEEETTSTTCCSCSEEEECSCT--TSBEEEEEECTTSSEEEEEESS--------SEEEEE
T ss_pred CCcEEEEcC-C------CeEEEEECCCCCceeeeecccccCC--CCcEEEEEEcCCCCEEEEEcCC--------CcEEEE
Confidence 556667766 3 24888898876421 1111111 1122233333 45566666532 468889
Q ss_pred ECCCCceEecCCCCCCcccceEEEE--CCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEE
Q 013909 203 DSETRKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFV 280 (434)
Q Consensus 203 d~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~ 280 (434)
|..+.+......+.........+.+ +++.++.|+.++ .+..|++ .+.+... .+.........+.
T Consensus 125 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~v~~~d~-------~~~~~~~--~~~~~~~~i~~~~ 190 (337)
T 1gxr_A 125 DLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG-----NIAVWDL-------HNQTLVR--QFQGHTDGASCID 190 (337)
T ss_dssp ECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTS-----CEEEEET-------TTTEEEE--EECCCSSCEEEEE
T ss_pred ECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCC-----cEEEEeC-------CCCceee--eeecccCceEEEE
Confidence 9988775443322222221222222 556666666542 4556662 2332221 1111111112222
Q ss_pred E--CCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEEECCEEEEEcCcC
Q 013909 281 F--NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTT 357 (434)
Q Consensus 281 ~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~ 357 (434)
+ +++.++.|+.++ .+..|| .+.+-......+. .- .......+++++++|+.+
T Consensus 191 ~~~~~~~l~~~~~dg----------------------~i~~~d~~~~~~~~~~~~~~--~v-~~~~~s~~~~~l~~~~~~ 245 (337)
T 1gxr_A 191 ISNDGTKLWTGGLDN----------------------TVRSWDLREGRQLQQHDFTS--QI-FSLGYCPTGEWLAVGMES 245 (337)
T ss_dssp ECTTSSEEEEEETTS----------------------EEEEEETTTTEEEEEEECSS--CE-EEEEECTTSSEEEEEETT
T ss_pred ECCCCCEEEEEecCC----------------------cEEEEECCCCceEeeecCCC--ce-EEEEECCCCCEEEEEcCC
Confidence 2 666777777654 377787 4432211111111 11 111123466777777644
Q ss_pred CCCCCccceeeeccEEEEECCCCceEEe
Q 013909 358 EKHPMTKRMILVGEVFQFHLDSLTWSVI 385 (434)
Q Consensus 358 ~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 385 (434)
..+.+||+.+.+-..+
T Consensus 246 ------------~~i~~~~~~~~~~~~~ 261 (337)
T 1gxr_A 246 ------------SNVEVLHVNKPDKYQL 261 (337)
T ss_dssp ------------SCEEEEETTSSCEEEE
T ss_pred ------------CcEEEEECCCCCeEEE
Confidence 2588899887764433
No 102
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=94.75 E-value=0.42 Score=44.63 Aligned_cols=51 Identities=16% Similarity=-0.027 Sum_probs=28.2
Q ss_pred CEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccCCCceeeeeeEE--ECCEEEEEccccC
Q 013909 348 NSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKLPYRIKTTLTGF--WDGWLYFTSGQRD 412 (434)
Q Consensus 348 ~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~--~~~~l~v~GG~~~ 412 (434)
+++++.|+.++ .+.+||.++.+-... +.....-.+++. .++++++.||.+.
T Consensus 282 ~~~lasgs~D~------------~i~iwd~~~~~~~~~--~~H~~~V~~vafsP~d~~~l~s~s~Dg 334 (357)
T 4g56_B 282 SPFLASISEDC------------TVAVLDADFSEVFRD--LSHRDFVTGVAWSPLDHSKFTTVGWDH 334 (357)
T ss_dssp SCCEEEEETTS------------CEEEECTTSCEEEEE--CCCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred CCEEEEEeCCC------------EEEEEECCCCcEeEE--CCCCCCEEEEEEeCCCCCEEEEEcCCC
Confidence 35666676542 588899887764432 322211122222 2567777777544
No 103
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=94.74 E-value=2.6 Score=38.99 Aligned_cols=52 Identities=12% Similarity=0.026 Sum_probs=27.5
Q ss_pred ECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccCCCceee--eeeEEECCEEEEEcccc
Q 013909 346 VNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKLPYRIKT--TLTGFWDGWLYFTSGQR 411 (434)
Q Consensus 346 ~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~--~~~~~~~~~l~v~GG~~ 411 (434)
.++++++.|+.++ .+.+||+.+.+=. ..+...... ......+++.++.|+.+
T Consensus 294 ~~g~~l~~g~~d~------------~i~vwd~~~~~~~--~~l~~h~~~v~~l~~spdg~~l~sgs~D 347 (354)
T 2pbi_B 294 LSGRLLFAGYNDY------------TINVWDVLKGSRV--SILFGHENRVSTLRVSPDGTAFCSGSWD 347 (354)
T ss_dssp TTSSEEEEEETTS------------CEEEEETTTCSEE--EEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred CCCCEEEEEECCC------------cEEEEECCCCceE--EEEECCCCcEEEEEECCCCCEEEEEcCC
Confidence 4677777777542 6888998765522 222211111 11222356777776644
No 104
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=94.71 E-value=0.57 Score=44.63 Aligned_cols=65 Identities=8% Similarity=0.055 Sum_probs=35.7
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
++.+++.|+.++. +.+||+.+.+-.. .+... ...-.+++.. ++..++.|+.+ ..+..||..+
T Consensus 161 ~~~~l~sgs~D~~------i~iwd~~~~~~~~--~~~~h-~~~V~~v~~~p~~~~l~s~s~D--------~~i~~wd~~~ 223 (410)
T 1vyh_C 161 SGKLLASCSADMT------IKLWDFQGFECIR--TMHGH-DHNVSSVSIMPNGDHIVSASRD--------KTIKMWEVQT 223 (410)
T ss_dssp TSSEEEEEETTSC------CCEEETTSSCEEE--CCCCC-SSCEEEEEECSSSSEEEEEETT--------SEEEEEETTT
T ss_pred CCCEEEEEeCCCe------EEEEeCCCCceeE--EEcCC-CCCEEEEEEeCCCCEEEEEeCC--------CeEEEEECCC
Confidence 5677888876642 5667877654322 22210 1112233333 45566666643 4678889887
Q ss_pred Cce
Q 013909 207 RKW 209 (434)
Q Consensus 207 ~~W 209 (434)
...
T Consensus 224 ~~~ 226 (410)
T 1vyh_C 224 GYC 226 (410)
T ss_dssp CCE
T ss_pred CcE
Confidence 654
No 105
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.68 E-value=0.74 Score=47.92 Aligned_cols=188 Identities=10% Similarity=0.103 Sum_probs=89.1
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEec-CCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDR-FDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~-~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~ 205 (434)
++..++.|+.+ ..+.+||..+++.... .... ..-.+++.. ++..++.|+.+ ..+.+||..
T Consensus 66 ~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~~d--------g~i~vw~~~ 127 (814)
T 3mkq_A 66 RKNWIIVGSDD------FRIRVFNYNTGEKVVDFEAHP----DYIRSIAVHPTKPYVLSGSDD--------LTVKLWNWE 127 (814)
T ss_dssp GGTEEEEEETT------SEEEEEETTTCCEEEEEECCS----SCEEEEEECSSSSEEEEEETT--------SEEEEEEGG
T ss_pred CCCEEEEEeCC------CeEEEEECCCCcEEEEEecCC----CCEEEEEEeCCCCEEEEEcCC--------CEEEEEECC
Confidence 56667777653 2488899988775432 2111 112233333 45455566532 467888887
Q ss_pred CC-ceEecCCCCCCcccceEEEE--CCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEE-
Q 013909 206 TR-KWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVF- 281 (434)
Q Consensus 206 t~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~- 281 (434)
++ .....-. .....-.+++.. ++.+++.|+.++ .+.+|++. ................. .++..
T Consensus 128 ~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg-----~v~vwd~~-----~~~~~~~~~~~~~~~v~--~~~~~~ 194 (814)
T 3mkq_A 128 NNWALEQTFE-GHEHFVMCVAFNPKDPSTFASGCLDR-----TVKVWSLG-----QSTPNFTLTTGQERGVN--YVDYYP 194 (814)
T ss_dssp GTSEEEEEEE-CCSSCEEEEEEETTEEEEEEEEETTS-----EEEEEETT-----CSSCSEEEECCCTTCCC--EEEECC
T ss_pred CCceEEEEEc-CCCCcEEEEEEEcCCCCEEEEEeCCC-----eEEEEECC-----CCcceeEEecCCCCCEE--EEEEEE
Confidence 65 2222111 011111222222 456777766543 45556531 11222222211112221 22222
Q ss_pred --CCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCC-eEEcCCCCCCCCccceeEEEECCEEEEEcCcC
Q 013909 282 --NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMK-WKVLPPMPKPNSHIECAWVIVNNSIIITGGTT 357 (434)
Q Consensus 282 --~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~-W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~ 357 (434)
++..++.|+.++. +..|| .+.+ -..+.. ......+.+...++.+++.|+.+
T Consensus 195 ~~~~~~l~~~~~dg~----------------------i~~~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d 249 (814)
T 3mkq_A 195 LPDKPYMITASDDLT----------------------IKIWDYQTKSCVATLEG---HMSNVSFAVFHPTLPIIISGSED 249 (814)
T ss_dssp STTCCEEEEECTTSE----------------------EEEEETTTTEEEEEEEC---CSSCEEEEEECSSSSEEEEEETT
T ss_pred CCCCCEEEEEeCCCE----------------------EEEEECCCCcEEEEEcC---CCCCEEEEEEcCCCCEEEEEeCC
Confidence 6778888876543 77777 4332 222211 11112222123356677777754
Q ss_pred CCCCCccceeeeccEEEEECCCCceE
Q 013909 358 EKHPMTKRMILVGEVFQFHLDSLTWS 383 (434)
Q Consensus 358 ~~~~~~~~~~~~~~v~~yd~~~~~W~ 383 (434)
+ .+.+||+.+.+-.
T Consensus 250 g------------~v~vwd~~~~~~~ 263 (814)
T 3mkq_A 250 G------------TLKIWNSSTYKVE 263 (814)
T ss_dssp S------------CEEEEETTTCSEE
T ss_pred C------------eEEEEECCCCcEE
Confidence 2 5788888775543
No 106
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=94.54 E-value=1.9 Score=40.12 Aligned_cols=29 Identities=10% Similarity=-0.028 Sum_probs=17.4
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCc
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNK 156 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~ 156 (434)
++++++.|+.+...-.-..++.|+..+..
T Consensus 53 DG~~las~s~d~~~~wd~~v~~~~~~~~~ 81 (357)
T 4g56_B 53 DGALLLAASSLSSRTWGGSIWVFKDPEGA 81 (357)
T ss_dssp SSCEEEEEECSSSSSCCEEEEEESSCC--
T ss_pred CCCEEEEEcCCCCccccCeEEEEECCCCC
Confidence 78888888765432223457888776643
No 107
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=94.54 E-value=2 Score=39.29 Aligned_cols=67 Identities=7% Similarity=0.076 Sum_probs=34.6
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
+++.++.|+.++ .+.+||..+.+-...-..+. .-.+++.. ++..++.++.+... ....+..||..+
T Consensus 85 ~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~~~~~---~~g~i~~~d~~~ 151 (369)
T 3zwl_B 85 FTKYCVTGSADY------SIKLWDVSNGQCVATWKSPV----PVKRVEFSPCGNYFLAILDNVMK---NPGSINIYEIER 151 (369)
T ss_dssp TSSEEEEEETTT------EEEEEETTTCCEEEEEECSS----CEEEEEECTTSSEEEEEECCBTT---BCCEEEEEEEEE
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEEeecCC----CeEEEEEccCCCEEEEecCCccC---CCCEEEEEEecC
Confidence 466677776542 48889998876543322222 12223332 45555555533111 124667777654
Q ss_pred C
Q 013909 207 R 207 (434)
Q Consensus 207 ~ 207 (434)
.
T Consensus 152 ~ 152 (369)
T 3zwl_B 152 D 152 (369)
T ss_dssp C
T ss_pred C
Confidence 3
No 108
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=94.53 E-value=1.7 Score=44.13 Aligned_cols=240 Identities=9% Similarity=-0.071 Sum_probs=117.8
Q ss_pred cceeeccCC--C-CcEEEcCCCCCC----CCceeEEEECCEEEEEeccCC----CCCceeeEEEEECCC------CceEe
Q 013909 97 ATFADLPAP--D-LEWEQMPSAPVP----RLDGAAIQIKNLFYVFAGYGS----LDYVHSHVDVYNFTD------NKWVD 159 (434)
Q Consensus 97 ~~~~~~~~~--~-~~W~~~~~~p~~----R~~~~~~~~~~~iyv~GG~~~----~~~~~~~v~~yd~~t------~~W~~ 159 (434)
..++.++.. . ..-.++...+.. +....+..-+++.+++...+. ......+++.+|..+ .+-..
T Consensus 102 ~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 181 (662)
T 3azo_A 102 QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRE 181 (662)
T ss_dssp CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEE
T ss_pred CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeE
Confidence 357777765 3 555666554321 112222223555444444321 112345799999998 67666
Q ss_pred cC-CCCCCCCceeeEEEE-eCCEEEEEeccCCCCCCCCCceeEEEECC-CC---ceEecCCCCCCcccceEE-EECCEEE
Q 013909 160 RF-DMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSE-TR---KWDSIPPLPSPRYSPATQ-LWRGRLH 232 (434)
Q Consensus 160 ~~-~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~~-t~---~W~~~~~~p~~r~~~~~~-~~~~~iy 232 (434)
+. .-. ......+. -+++..++...+.....-...+++++|.. +. +.+.+..-.. ......+ .-++++|
T Consensus 182 l~~~~~----~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~-~~~~~~~~spdg~l~ 256 (662)
T 3azo_A 182 LSDDAH----RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE-EAIAQAEWAPDGSLI 256 (662)
T ss_dssp SSCSCS----SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT-BCEEEEEECTTSCEE
T ss_pred EEecCC----CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC-ceEcceEECCCCeEE
Confidence 65 322 11122222 24443334333322110113689999998 56 3443322111 1111222 2267777
Q ss_pred EEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCC-------ceeEEEE-CCEEEEEcCCCCCCCCCCCCCcc
Q 013909 233 VMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGP-------HRACFVF-NDRLFVVGGQEGDFMAKPGSPIF 304 (434)
Q Consensus 233 v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~-------~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~ 304 (434)
+.+..++ ...+|.++ ..+.+++.+.+...... ...++.. ++++++.+.. +.
T Consensus 257 ~~~~~~~-----~~~l~~~~-----~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~---------- 315 (662)
T 3azo_A 257 VATDRTG-----WWNLHRVD-----PATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA---------- 315 (662)
T ss_dssp EEECTTS-----SCEEEEEC-----TTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS----------
T ss_pred EEECCCC-----CeEEEEEE-----CCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc----------
Confidence 7765432 12344332 55667776544321110 1123333 6777777765 32
Q ss_pred ccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeE-EEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCce
Q 013909 305 KCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAW-VIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTW 382 (434)
Q Consensus 305 ~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~-~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W 382 (434)
..+|.+| .+.+.+.+... ..... .+ ...++.+++..+... ...+++.+|+++.+.
T Consensus 316 ----------~~l~~~d~~~~~~~~l~~~---~~~~~-~~~s~~~~~~~~~~~~~~---------~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 316 ----------AVLGILDPESGELVDAAGP---WTEWA-ATLTVSGTRAVGVAASPR---------TAYEVVELDTVTGRA 372 (662)
T ss_dssp ----------CEEEEEETTTTEEEECCSS---CCEEE-EEEEEETTEEEEEEEETT---------EEEEEEEEETTTCCE
T ss_pred ----------cEEEEEECCCCcEEEecCC---CCeEE-EEEecCCCEEEEEEcCCC---------CCCEEEEEECCCCce
Confidence 2488888 55666666422 11111 22 344666666554322 224789999988888
Q ss_pred EEe
Q 013909 383 SVI 385 (434)
Q Consensus 383 ~~~ 385 (434)
+.+
T Consensus 373 ~~l 375 (662)
T 3azo_A 373 RTI 375 (662)
T ss_dssp EEE
T ss_pred EEe
Confidence 776
No 109
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=94.49 E-value=0.66 Score=42.29 Aligned_cols=104 Identities=10% Similarity=0.062 Sum_probs=52.3
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe---CCEEEEEeccCCCCCCCCCceeEEEEC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD---GRYIYIVSGQYGPQCRGPTSRTFVLDS 204 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~yd~ 204 (434)
+++.++.|+.++ .+.+||+.+++...+..+..- ...-.+++.. ++.+++.|+.+ ..+.++|+
T Consensus 24 ~g~~lasgs~D~------~v~lwd~~~~~~~~~~~l~gH-~~~V~~v~~~~~~~~~~l~s~s~D--------~~v~iWd~ 88 (316)
T 3bg1_A 24 YGTRLATCSSDR------SVKIFDVRNGGQILIADLRGH-EGPVWQVAWAHPMYGNILASCSYD--------RKVIIWRE 88 (316)
T ss_dssp GGCEEEEEETTT------EEEEEEEETTEEEEEEEEECC-SSCEEEEEECCGGGSSCEEEEETT--------SCEEEECC
T ss_pred CCCEEEEEeCCC------eEEEEEecCCCcEEEEEEcCC-CccEEEEEeCCCCCCCEEEEEECC--------CEEEEEEC
Confidence 566777777542 377788877654332222210 0111233332 25667777643 35778888
Q ss_pred CCCceEecCCCCCCcccc-eEEEE-C--CEEEEEcCCCCCCCCCCcceEEE
Q 013909 205 ETRKWDSIPPLPSPRYSP-ATQLW-R--GRLHVMGGSKENRHTPGLEHWSI 251 (434)
Q Consensus 205 ~t~~W~~~~~~p~~r~~~-~~~~~-~--~~iyv~GG~~~~~~~~~~~~~~~ 251 (434)
.+.+|..+..+....... +++.. + +.+++.|+.+ ..+..|++
T Consensus 89 ~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D-----~~i~lwd~ 134 (316)
T 3bg1_A 89 ENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD-----GAISLLTY 134 (316)
T ss_dssp SSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSS-----SCEEEEEE
T ss_pred CCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCC-----CCEEEEec
Confidence 887665443222111111 22222 2 4566676654 34566764
No 110
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=94.47 E-value=0.61 Score=43.37 Aligned_cols=69 Identities=10% Similarity=-0.033 Sum_probs=34.8
Q ss_pred ECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCC-CCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEEC
Q 013909 127 IKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK-DMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDS 204 (434)
Q Consensus 127 ~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~-~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~ 204 (434)
..+..++.|+.++ .+.+||+.+++-........ .-...-.+++.. +++.++.|+.+ ..+.++|+
T Consensus 91 s~d~~l~~~s~dg------~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d--------~~i~iwd~ 156 (344)
T 4gqb_B 91 VGERGILVASDSG------AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD--------ICIKVWDL 156 (344)
T ss_dssp ETTTEEEEEETTS------EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT--------SCEEEEET
T ss_pred eCCCeEEEEECCC------EEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC--------CeEEEEEC
Confidence 3444455665442 37888888765321111000 000111233333 56677777743 35778898
Q ss_pred CCCce
Q 013909 205 ETRKW 209 (434)
Q Consensus 205 ~t~~W 209 (434)
.+.+-
T Consensus 157 ~~~~~ 161 (344)
T 4gqb_B 157 AQQVV 161 (344)
T ss_dssp TTTEE
T ss_pred CCCcE
Confidence 87654
No 111
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=94.41 E-value=0.82 Score=41.20 Aligned_cols=99 Identities=10% Similarity=0.129 Sum_probs=52.1
Q ss_pred CCEEEEEeccCCC-CCceeeEEEEECCCCceEecCCCC-CCCCceeeEEEEe-C-CEEEEEeccCCCCCCCCCceeEEEE
Q 013909 128 KNLFYVFAGYGSL-DYVHSHVDVYNFTDNKWVDRFDMP-KDMAHSHLGVVSD-G-RYIYIVSGQYGPQCRGPTSRTFVLD 203 (434)
Q Consensus 128 ~~~iyv~GG~~~~-~~~~~~v~~yd~~t~~W~~~~~~~-~~~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~yd 203 (434)
++.+|+....... ......+.+||+.++++..+.... ......-.+++.. + ++||+... .+.+++||
T Consensus 28 ~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~---------~~~l~~~d 98 (314)
T 1pjx_A 28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM---------RLGLLVVQ 98 (314)
T ss_dssp TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET---------TTEEEEEE
T ss_pred CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC---------CCCEEEEe
Confidence 5678887211000 001235899999998887653200 0001122344443 4 78998754 13688999
Q ss_pred CCCCceEec-CCCCCC---cccceEEE-ECCEEEEEcC
Q 013909 204 SETRKWDSI-PPLPSP---RYSPATQL-WRGRLHVMGG 236 (434)
Q Consensus 204 ~~t~~W~~~-~~~p~~---r~~~~~~~-~~~~iyv~GG 236 (434)
+. .+...+ ...... ..-..++. -++++|+...
T Consensus 99 ~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~ 135 (314)
T 1pjx_A 99 TD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAP 135 (314)
T ss_dssp TT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEEC
T ss_pred CC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEec
Confidence 98 777665 332211 11122332 3678888754
No 112
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=94.41 E-value=2.5 Score=37.38 Aligned_cols=239 Identities=13% Similarity=0.113 Sum_probs=114.6
Q ss_pred cceeeccCCCCcEEEcCCCCCCCCc-eeEEEE-CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEE
Q 013909 97 ATFADLPAPDLEWEQMPSAPVPRLD-GAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGV 174 (434)
Q Consensus 97 ~~~~~~~~~~~~W~~~~~~p~~R~~-~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~ 174 (434)
..+..+++. .+..... ++..... ++++.. ++.+|+..... ..+.+||+. +++.... ++.. ...-+++
T Consensus 41 ~~v~~~~~~-~~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~------~~v~~~d~~-g~~~~~~-~~~~-~~~~~~i 109 (300)
T 2qc5_A 41 NKISSLDQS-GRIKEFE-VPTPDAKVMCLIVSSLGDIWFTENGA------NKIGKLSKK-GGFTEYP-LPQP-DSGPYGI 109 (300)
T ss_dssp TEEEEECTT-SCEEEEE-CSSTTCCEEEEEECTTSCEEEEETTT------TEEEEECTT-SCEEEEE-CSST-TCCEEEE
T ss_pred CeEEEECCC-CceEEEE-CCCCCCcceeEEECCCCCEEEEecCC------CeEEEECCC-CCeEEec-CCCC-CCCCccc
Confidence 367777777 6655432 2221122 233322 56788865321 348899998 6665442 2211 1233445
Q ss_pred EEe-CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCC-cccceEEE-ECCEEEEEcCCCCCCCCCCcceEEE
Q 013909 175 VSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSP-RYSPATQL-WRGRLHVMGGSKENRHTPGLEHWSI 251 (434)
Q Consensus 175 ~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~-r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~ 251 (434)
++. ++.+|+.... ...+.+||+. .+..... ++.. ..-..++. -+++||+..... ..+..|+
T Consensus 110 ~~~~~g~l~v~~~~--------~~~i~~~~~~-g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~~-----~~i~~~~- 173 (300)
T 2qc5_A 110 TEGLNGDIWFTQLN--------GDRIGKLTAD-GTIYEYD-LPNKGSYPAFITLGSDNALWFTENQN-----NSIGRIT- 173 (300)
T ss_dssp EECSTTCEEEEETT--------TTEEEEECTT-SCEEEEE-CSSTTCCEEEEEECTTSSEEEEETTT-----TEEEEEC-
T ss_pred eECCCCCEEEEccC--------CCeEEEECCC-CCEEEcc-CCCCCCCceeEEECCCCCEEEEecCC-----CeEEEEC-
Confidence 554 6788886431 2468889987 5555432 2211 11122222 256788874321 1222222
Q ss_pred EeeccccccCceEEccCCCCCCCce-eEEEE-CCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeCCCCCeEEc
Q 013909 252 AVKDGKALEKAWRTEIPIPRGGPHR-ACFVF-NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDDEMKWKVL 329 (434)
Q Consensus 252 ~~~~~~~~~~~W~~~~~~p~~~~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~W~~~ 329 (434)
+ +.+..... .+...... .++.. ++.+|+.....+ .+++||.+.++...
T Consensus 174 ------~-~g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~~~----------------------~i~~~~~~g~~~~~ 223 (300)
T 2qc5_A 174 ------N-TGKLEEYP-LPTNAAAPVGITSGNDGALWFVEIMGN----------------------KIGRITTTGEISEY 223 (300)
T ss_dssp ------T-TCCEEEEE-CSSTTCCEEEEEECTTSSEEEEETTTT----------------------EEEEECTTCCEEEE
T ss_pred ------C-CCcEEEee-CCCCCCCcceEEECCCCCEEEEccCCC----------------------EEEEEcCCCcEEEE
Confidence 3 34444321 22211112 23332 678888653221 38888864455443
Q ss_pred CCCCCCCCccceeEEE-ECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccCCCcee-eeeeEE-ECCEEEE
Q 013909 330 PPMPKPNSHIECAWVI-VNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKLPYRIK-TTLTGF-WDGWLYF 406 (434)
Q Consensus 330 ~~~p~~r~~~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~-~~~~~~-~~~~l~v 406 (434)
. ++....... +++. .+++||+....+ +.+.+||+ +.+..... ++.... -.+++. -+++||+
T Consensus 224 ~-~~~~~~~~~-~i~~d~~g~l~v~~~~~------------~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~~~~g~l~v 287 (300)
T 2qc5_A 224 D-IPTPNARPH-AITAGKNSEIWFTEWGA------------NQIGRITN-DNTIQEYQ-LQTENAEPHGITFGKDGSVWF 287 (300)
T ss_dssp E-CSSTTCCEE-EEEECSTTCEEEEETTT------------TEEEEECT-TSCEEEEE-CCSTTCCCCCEEECTTSCEEE
T ss_pred E-CCCCCCCce-EEEECCCCCEEEeccCC------------CeEEEECC-CCcEEEEE-CCccCCccceeEeCCCCCEEE
Confidence 2 121112211 2233 356788865321 36889998 45665542 232111 223333 2567777
Q ss_pred Ec
Q 013909 407 TS 408 (434)
Q Consensus 407 ~G 408 (434)
..
T Consensus 288 ~~ 289 (300)
T 2qc5_A 288 AL 289 (300)
T ss_dssp EC
T ss_pred Ec
Confidence 54
No 113
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=94.26 E-value=0.75 Score=41.91 Aligned_cols=69 Identities=13% Similarity=0.200 Sum_probs=36.7
Q ss_pred CEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-C--CEEEEEeccCCCCCCCCCceeEEEECC
Q 013909 129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-G--RYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (434)
Q Consensus 129 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~--~~lyv~GG~~~~~~~~~~~~~~~yd~~ 205 (434)
+.+++.|+.++ .+.++|+.+.+|..+..+... ...-.+++.. + +.+++.|+.++ .+..+|..
T Consensus 71 ~~~l~s~s~D~------~v~iWd~~~~~~~~~~~~~~h-~~~V~~v~~~p~~~g~~lasgs~D~--------~i~lwd~~ 135 (316)
T 3bg1_A 71 GNILASCSYDR------KVIIWREENGTWEKSHEHAGH-DSSVNSVCWAPHDYGLILACGSSDG--------AISLLTYT 135 (316)
T ss_dssp SSCEEEEETTS------CEEEECCSSSCCCEEEEECCC-SSCCCEEEECCTTTCSCEEEECSSS--------CEEEEEEC
T ss_pred CCEEEEEECCC------EEEEEECCCCcceEEEEccCC-CCceEEEEECCCCCCcEEEEEcCCC--------CEEEEecC
Confidence 56777777653 378889888777543322210 0111233333 2 55667776432 45667766
Q ss_pred CC-ceEec
Q 013909 206 TR-KWDSI 212 (434)
Q Consensus 206 t~-~W~~~ 212 (434)
+. .|...
T Consensus 136 ~~~~~~~~ 143 (316)
T 3bg1_A 136 GEGQWEVK 143 (316)
T ss_dssp SSSCEEEC
T ss_pred CCCCccee
Confidence 54 46543
No 114
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=94.19 E-value=0.74 Score=42.64 Aligned_cols=99 Identities=12% Similarity=0.055 Sum_probs=47.0
Q ss_pred EEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe--CCEEEEEeccCCCCCCCCCceeEEEECCCCc
Q 013909 131 FYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSETRK 208 (434)
Q Consensus 131 iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~ 208 (434)
.+.+|.+.......-.+|.+|+.+.+.+.+..... ..- ..+++. +..||+.+...... ..-.+|.+|..+.+
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~--~~p-~~l~~spdg~~l~~~~~~~~~~---~~v~~~~~~~~~g~ 88 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEV--ANP-SYLIPSADGKFVYSVNEFSKDQ---AAVSAFAFDKEKGT 88 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEEC--SCC-CSEEECTTSSEEEEEECCSSTT---CEEEEEEEETTTTE
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccC--CCC-ceEEECCCCCEEEEEEccCCCC---CcEEEEEEeCCCCc
Confidence 44566654333222346777888888876644311 111 123332 44577765431111 01234566666677
Q ss_pred eEecCCCCCCc-ccceEEEECCEEEEEc
Q 013909 209 WDSIPPLPSPR-YSPATQLWRGRLHVMG 235 (434)
Q Consensus 209 W~~~~~~p~~r-~~~~~~~~~~~iyv~G 235 (434)
.+.+...+... .-+.++.-++.||+..
T Consensus 89 ~~~~~~~~~~~~~p~~~~~dg~~l~~~~ 116 (361)
T 3scy_A 89 LHLLNTQKTMGADPCYLTTNGKNIVTAN 116 (361)
T ss_dssp EEEEEEEECSSSCEEEEEECSSEEEEEE
T ss_pred EEEeeEeccCCCCcEEEEECCCEEEEEE
Confidence 77665443221 2222233334466654
No 115
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=94.14 E-value=1.7 Score=39.19 Aligned_cols=62 Identities=8% Similarity=0.078 Sum_probs=33.7
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEe-cCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVD-RFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~ 205 (434)
++++++.|+.++ .+.+||..+.+-.. +..-. ..-.+++.. ++.+++.|+.+ ..+..+|..
T Consensus 66 ~~~~l~s~s~d~------~i~vwd~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~sgs~D--------~~v~lWd~~ 127 (304)
T 2ynn_A 66 RKNWIIVGSDDF------RIRVFNYNTGEKVVDFEAHP----DYIRSIAVHPTKPYVLSGSDD--------LTVKLWNWE 127 (304)
T ss_dssp GGTEEEEEETTS------EEEEEETTTCCEEEEEECCS----SCEEEEEECSSSSEEEEEETT--------SCEEEEEGG
T ss_pred CCCEEEEECCCC------EEEEEECCCCcEEEEEeCCC----CcEEEEEEcCCCCEEEEECCC--------CeEEEEECC
Confidence 556677776542 47888988775322 11111 112233333 45566667643 356778876
Q ss_pred CC
Q 013909 206 TR 207 (434)
Q Consensus 206 t~ 207 (434)
++
T Consensus 128 ~~ 129 (304)
T 2ynn_A 128 NN 129 (304)
T ss_dssp GT
T ss_pred CC
Confidence 54
No 116
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=94.11 E-value=2.2 Score=38.54 Aligned_cols=50 Identities=18% Similarity=0.199 Sum_probs=25.9
Q ss_pred eEEEEECC--CCceEecCCCCCCCCceeeEEEEe--CCEEEEEeccCCCCCCCCCceeEEEECC
Q 013909 146 HVDVYNFT--DNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (434)
Q Consensus 146 ~v~~yd~~--t~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~ 205 (434)
.+.+|++. ++++..+..++.+. .-..++.. +..||+.+.. ...+.+||..
T Consensus 61 ~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~--------~~~i~~~d~~ 114 (343)
T 1ri6_A 61 RVLAYRIAPDDGALTFAAESALPG--SLTHISTDHQGQFVFVGSYN--------AGNVSVTRLE 114 (343)
T ss_dssp EEEEEEECTTTCCEEEEEEEECSS--CCSEEEECTTSSEEEEEETT--------TTEEEEEEEE
T ss_pred eEEEEEecCCCCceeeccccccCC--CCcEEEEcCCCCEEEEEecC--------CCeEEEEECC
Confidence 36666665 77777654443211 12233333 3456665431 2457778873
No 117
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=94.11 E-value=1.9 Score=40.92 Aligned_cols=99 Identities=9% Similarity=0.057 Sum_probs=49.8
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
++.+++.|+.++ .+.+||..+.+-...-.... ..-.+++.. ++++++.|+.++ .+.+||..+
T Consensus 119 ~~~~l~s~s~Dg------~i~vwd~~~~~~~~~l~~h~---~~V~~v~~~~~~~~l~sgs~D~--------~i~iwd~~~ 181 (410)
T 1vyh_C 119 VFSVMVSASEDA------TIKVWDYETGDFERTLKGHT---DSVQDISFDHSGKLLASCSADM--------TIKLWDFQG 181 (410)
T ss_dssp SSSEEEEEESSS------CEEEEETTTCCCCEEECCCS---SCEEEEEECTTSSEEEEEETTS--------CCCEEETTS
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEEEeccC---CcEEEEEEcCCCCEEEEEeCCC--------eEEEEeCCC
Confidence 456777777653 37888988876432211111 112233332 566777777543 355678766
Q ss_pred CceEecCCCCCCcccceEEEE--CCEEEEEcCCCCCCCCCCcceEE
Q 013909 207 RKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWS 250 (434)
Q Consensus 207 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~ 250 (434)
.+-... +.........+.+ ++..++.|+.+ ..+.+|+
T Consensus 182 ~~~~~~--~~~h~~~V~~v~~~p~~~~l~s~s~D-----~~i~~wd 220 (410)
T 1vyh_C 182 FECIRT--MHGHDHNVSSVSIMPNGDHIVSASRD-----KTIKMWE 220 (410)
T ss_dssp SCEEEC--CCCCSSCEEEEEECSSSSEEEEEETT-----SEEEEEE
T ss_pred CceeEE--EcCCCCCEEEEEEeCCCCEEEEEeCC-----CeEEEEE
Confidence 543222 2211111122222 45566666654 3455666
No 118
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=94.08 E-value=0.57 Score=43.04 Aligned_cols=100 Identities=11% Similarity=0.096 Sum_probs=51.9
Q ss_pred CEEEEEeccCCCCCceeeEEEEECCCCceEe-cCCCCCCCCceeeEEEEe--CCEEEEEeccCCCCCCCCCceeEEEECC
Q 013909 129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVD-RFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (434)
Q Consensus 129 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~ 205 (434)
+.+++.|+.++ .+.+||+.+.+-.. +.... ..-.+++.. ++.+++.|+.+ ..+..||..
T Consensus 85 ~~~l~~~~~dg------~i~v~d~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~ 146 (366)
T 3k26_A 85 HPLLAVAGSRG------IIRIINPITMQCIKHYVGHG----NAINELKFHPRDPNLLLSVSKD--------HALRLWNIQ 146 (366)
T ss_dssp CEEEEEEETTC------EEEEECTTTCCEEEEEESCC----SCEEEEEECSSCTTEEEEEETT--------SCEEEEETT
T ss_pred CCEEEEecCCC------EEEEEEchhceEeeeecCCC----CcEEEEEECCCCCCEEEEEeCC--------CeEEEEEee
Confidence 57888887653 48889988765322 11111 122233333 56677777743 357889988
Q ss_pred CCceEec-CCCCCCcccceEEEE--CCEEEEEcCCCCCCCCCCcceEEE
Q 013909 206 TRKWDSI-PPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSI 251 (434)
Q Consensus 206 t~~W~~~-~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~ 251 (434)
+.+-... ..+.........+.+ +++.++.|+.++ .+.+|++
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~ 190 (366)
T 3k26_A 147 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH-----SLKLWRI 190 (366)
T ss_dssp TTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTS-----CEEEEES
T ss_pred cCeEEEEecccccccCceeEEEECCCCCEEEEecCCC-----CEEEEEC
Confidence 7764332 211211112222222 455666666542 4556663
No 119
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=94.06 E-value=2.1 Score=38.72 Aligned_cols=52 Identities=8% Similarity=0.036 Sum_probs=32.1
Q ss_pred CCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccCCCc--eeeeeeEEECCEEEEEccccCC
Q 013909 347 NNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKLPYR--IKTTLTGFWDGWLYFTSGQRDR 413 (434)
Q Consensus 347 ~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~lp~~--r~~~~~~~~~~~l~v~GG~~~~ 413 (434)
++++++.|+.++ .+.+||+.+.+-.. .++.. ..-..++ .++++++.||.+..
T Consensus 262 ~~~~l~~~~~dg------------~i~vwd~~~~~~~~--~~~~~h~~~v~~~~-~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 262 RHKFLYTAGSDG------------IISCWNLQTRKKIK--NFAKFNEDSVVKIA-CSDNILCLATSDDT 315 (342)
T ss_dssp TTCCEEEEETTS------------CEEEEETTTTEEEE--ECCCCSSSEEEEEE-ECSSEEEEEEECTH
T ss_pred CCCEEEEecCCc------------eEEEEcCccHhHhh--hhhcccCCCceEec-CCCCeEEEEecCCc
Confidence 567777777542 68899988766433 33322 2223334 78888888876653
No 120
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=94.00 E-value=1.8 Score=38.91 Aligned_cols=70 Identities=7% Similarity=0.036 Sum_probs=38.2
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe---CCEEEEEeccCCCCCCCCCceeEEEEC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD---GRYIYIVSGQYGPQCRGPTSRTFVLDS 204 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~yd~ 204 (434)
+++.++.|+.++ .+.+||..+.+...+..+..- ...-.+++.. ++.+++.|+.+ ..+.++|.
T Consensus 20 ~g~~las~s~D~------~v~iw~~~~~~~~~~~~l~gH-~~~V~~v~~s~~~~g~~l~s~s~D--------~~v~iWd~ 84 (297)
T 2pm7_B 20 YGKRMATCSSDK------TIKIFEVEGETHKLIDTLTGH-EGPVWRVDWAHPKFGTILASCSYD--------GKVMIWKE 84 (297)
T ss_dssp TSSEEEEEETTS------CEEEEEBCSSCBCCCEEECCC-SSCEEEEEECCGGGCSEEEEEETT--------TEEEEEEB
T ss_pred CCCEEEEEeCCC------EEEEEecCCCCcEEEEEEccc-cCCeEEEEecCCCcCCEEEEEcCC--------CEEEEEEc
Confidence 567777777653 377788775543322222210 1111233332 25677777643 45778898
Q ss_pred CCCceEec
Q 013909 205 ETRKWDSI 212 (434)
Q Consensus 205 ~t~~W~~~ 212 (434)
.+.+|..+
T Consensus 85 ~~~~~~~~ 92 (297)
T 2pm7_B 85 ENGRWSQI 92 (297)
T ss_dssp SSSCBCCC
T ss_pred CCCceEEE
Confidence 88776544
No 121
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.96 E-value=2.8 Score=38.90 Aligned_cols=61 Identities=7% Similarity=-0.018 Sum_probs=33.0
Q ss_pred ceeeccCCCCcEEEcCCCCCCCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCC
Q 013909 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP 164 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~ 164 (434)
.++.++..+.+...+..-+..........-+++.+++..... .++++|+.+.+-..+...+
T Consensus 61 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~------~l~~~d~~~~~~~~~~~~~ 121 (396)
T 3c5m_A 61 NYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNEL------NLMKVDLETLEEQVIYTVD 121 (396)
T ss_dssp EEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTT------EEEEEETTTCCEEEEEECC
T ss_pred eEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCC------cEEEEECCCCCcEEEEecc
Confidence 567778777776666543321111122233555444444321 4899999887765554433
No 122
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=93.94 E-value=0.75 Score=50.68 Aligned_cols=135 Identities=9% Similarity=0.010 Sum_probs=66.7
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~ 207 (434)
+++.++.|+.++ .+.+||..+++......... .-.+++...+..++.|+.+ ..+..||..+.
T Consensus 1014 dg~~l~s~~~dg------~i~vwd~~~~~~~~~~~~~~----~v~~~~~~~~~~l~~~~~d--------g~v~vwd~~~~ 1075 (1249)
T 3sfz_A 1014 DGKTLISSSEDS------VIQVWNWQTGDYVFLQAHQE----TVKDFRLLQDSRLLSWSFD--------GTVKVWNVITG 1075 (1249)
T ss_dssp SSSCEEEECSSS------BEEEEETTTTEEECCBCCSS----CEEEEEECSSSEEEEEESS--------SEEEEEETTTT
T ss_pred CCCEEEEEcCCC------EEEEEECCCCceEEEecCCC----cEEEEEEcCCCcEEEEECC--------CcEEEEECCCC
Confidence 566777776542 48889999988765433222 2233444433344555532 46788898776
Q ss_pred ceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEE--ECCEE
Q 013909 208 KWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFV--FNDRL 285 (434)
Q Consensus 208 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~--~~~~i 285 (434)
+-...-..........+..-+++.++.|+.++ .+.+|++. +. .....+......-.++. .++++
T Consensus 1076 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~-----~v~iwd~~-------~~--~~~~~l~~h~~~v~~~~~s~dg~~ 1141 (1249)
T 3sfz_A 1076 RIERDFTCHQGTVLSCAISSDATKFSSTSADK-----TAKIWSFD-------LL--SPLHELKGHNGCVRCSAFSLDGIL 1141 (1249)
T ss_dssp CCCEEEECCSSCCCCEEECSSSSSCEEECCSS-----CCCEECSS-------SS--SCSBCCCCCSSCEEEEEECSSSSE
T ss_pred ceeEEEcccCCcEEEEEECCCCCEEEEEcCCC-----cEEEEECC-------Cc--ceeeeeccCCCcEEEEEECCCCCE
Confidence 53221111111111122233566667766543 45667631 21 12222221111112222 27788
Q ss_pred EEEcCCCCC
Q 013909 286 FVVGGQEGD 294 (434)
Q Consensus 286 yv~GG~~~~ 294 (434)
++.|+.++.
T Consensus 1142 lat~~~dg~ 1150 (1249)
T 3sfz_A 1142 LATGDDNGE 1150 (1249)
T ss_dssp EEEEETTSC
T ss_pred EEEEeCCCE
Confidence 888887654
No 123
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=93.91 E-value=1.6 Score=40.91 Aligned_cols=63 Identities=13% Similarity=0.086 Sum_probs=34.0
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCC----C-ceEecCCCCCCCCceeeEEEEe--CCEEEEEeccCCCCCCCCCceeE
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTD----N-KWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTF 200 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t----~-~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~ 200 (434)
++.+++.|+.++ .+.+||..+ . .-..+..... .-.+++.. ++.+++.|+.+ ..+.
T Consensus 78 ~~~~l~~~~~dg------~v~vw~~~~~~~~~~~~~~~~~h~~----~v~~~~~~~~~~~~l~s~~~d--------g~v~ 139 (416)
T 2pm9_A 78 NNKIIAGALDNG------SLELYSTNEANNAINSMARFSNHSS----SVKTVKFNAKQDNVLASGGNN--------GEIF 139 (416)
T ss_dssp SSSCEEEEESSS------CEEEECCSSTTSCCCEEEECCCSSS----CCCEEEECSSSTTBEEEECSS--------SCEE
T ss_pred CCCeEEEEccCC------eEEEeecccccccccchhhccCCcc----ceEEEEEcCCCCCEEEEEcCC--------CeEE
Confidence 566677776542 377888876 1 2222222211 12233333 25677777643 3577
Q ss_pred EEECCCCc
Q 013909 201 VLDSETRK 208 (434)
Q Consensus 201 ~yd~~t~~ 208 (434)
+||..+.+
T Consensus 140 iwd~~~~~ 147 (416)
T 2pm9_A 140 IWDMNKCT 147 (416)
T ss_dssp BCBTTTTS
T ss_pred EEECCCCc
Confidence 78887664
No 124
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=93.89 E-value=4 Score=38.85 Aligned_cols=101 Identities=5% Similarity=0.024 Sum_probs=51.5
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEE-eCCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
++.+++.|+.++ .+.++|..++....+...... .....+++. -++.+++.|+.+ ..+..+|...
T Consensus 176 ~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~g~~d--------g~i~~wd~~~ 240 (435)
T 4e54_B 176 NTNQFYASSMEG------TTRLQDFKGNILRVFASSDTI-NIWFCSLDVSASSRMVVTGDNV--------GNVILLNMDG 240 (435)
T ss_dssp CTTEEEEECSSS------CEEEEETTSCEEEEEECCSSC-SCCCCCEEEETTTTEEEEECSS--------SBEEEEESSS
T ss_pred CCCEEEEEeCCC------EEEEeeccCCceeEEeccCCC-CccEEEEEECCCCCEEEEEeCC--------CcEeeeccCc
Confidence 456777777653 377889988766544332211 111222333 356677777743 3577888765
Q ss_pred CceEecCCCCCCcccceEEEE---CCEEEEEcCCCCCCCCCCcceEEE
Q 013909 207 RKWDSIPPLPSPRYSPATQLW---RGRLHVMGGSKENRHTPGLEHWSI 251 (434)
Q Consensus 207 ~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~ 251 (434)
.. +..+.........+.+ +..+++.|+.+ ..+.+|++
T Consensus 241 ~~---~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d-----~~v~iwd~ 280 (435)
T 4e54_B 241 KE---LWNLRMHKKKVTHVALNPCCDWFLATASVD-----QTVKIWDL 280 (435)
T ss_dssp CB---CCCSBCCSSCEEEEEECTTCSSEEEEEETT-----SBCCEEET
T ss_pred ce---eEEEecccceEEeeeecCCCceEEEEecCc-----ceeeEEec
Confidence 43 2222211111222222 33466666654 34567763
No 125
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=93.84 E-value=2.7 Score=42.89 Aligned_cols=59 Identities=0% Similarity=-0.170 Sum_probs=31.8
Q ss_pred cceeeccCCCCcEEEcCCCCCCCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCC-----CceEecCCC
Q 013909 97 ATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTD-----NKWVDRFDM 163 (434)
Q Consensus 97 ~~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t-----~~W~~~~~~ 163 (434)
..++.+|..+++-..+...+. ........-+++.+++. .+ ..++++|..+ ++-..+...
T Consensus 101 ~~i~~~d~~~~~~~~l~~~~~-~~~~~~~SpdG~~la~~-~~------~~i~v~~~~~~~~~~g~~~~~~~~ 164 (706)
T 2z3z_A 101 GGLVGFDMLARKVTYLFDTNE-ETASLDFSPVGDRVAYV-RN------HNLYIARGGKLGEGMSRAIAVTID 164 (706)
T ss_dssp TEEEEEETTTTEEEEEECCTT-CCTTCEECTTSSEEEEE-ET------TEEEEEECBCTTSCCCCCEESCSC
T ss_pred CEEEEEECCCCceEEccCCcc-cccCCcCCCCCCEEEEE-EC------CeEEEEecCcccccCCCcEEeccC
Confidence 477778877776555433221 11222223355444443 11 3589999988 776665443
No 126
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=93.76 E-value=4.4 Score=41.31 Aligned_cols=192 Identities=15% Similarity=0.044 Sum_probs=92.3
Q ss_pred eeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCCC-ceEecCCCCCCc--
Q 013909 144 HSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETR-KWDSIPPLPSPR-- 219 (434)
Q Consensus 144 ~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~-~W~~~~~~p~~r-- 219 (434)
...++++|+.+.+-..+...... ...-..++.. +++..+++..+... ....++.+|+.+. ..+.+.......
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~---~~~~v~~~d~~~g~~~~~~~~~~~~~~~ 309 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTGEPK-EKFLTNLSWSPDENILYVAEVNRAQ---NECKVNAYDAETGRFVRTLFVETDKHYV 309 (706)
T ss_dssp EEEEEEEETTTTEEEECCCCSCT-TCEEEEEEECTTSSEEEEEEECTTS---CEEEEEEEETTTCCEEEEEEEEECSSCC
T ss_pred eeEEEEEECCCCceEeeccCCCC-ceeEeeEEEECCCCEEEEEEeCCCC---CeeEEEEEECCCCceeeEEEEccCCCeE
Confidence 45699999999886655432111 1222233332 45434444333221 2468999999988 665553211111
Q ss_pred --ccceEEEE--CCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEE--C-CEEEEEcCCC
Q 013909 220 --YSPATQLW--RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVF--N-DRLFVVGGQE 292 (434)
Q Consensus 220 --~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~--~-~~iyv~GG~~ 292 (434)
.......- ++++++.+..++ ...+|.++ ......+.+..-.... .....+ + +.||+.+...
T Consensus 310 ~~~~~~~~sp~~dg~~l~~~~~~g-----~~~l~~~~-----~~~~~~~~l~~~~~~v--~~~~~~spdg~~l~~~~~~~ 377 (706)
T 2z3z_A 310 EPLHPLTFLPGSNNQFIWQSRRDG-----WNHLYLYD-----TTGRLIRQVTKGEWEV--TNFAGFDPKGTRLYFESTEA 377 (706)
T ss_dssp CCCSCCEECTTCSSEEEEEECTTS-----SCEEEEEE-----TTSCEEEECCCSSSCE--EEEEEECTTSSEEEEEESSS
T ss_pred CccCCceeecCCCCEEEEEEccCC-----ccEEEEEE-----CCCCEEEecCCCCeEE--EeeeEEcCCCCEEEEEecCC
Confidence 01112233 677666554432 34556543 3344444443211111 121223 3 4566655443
Q ss_pred CCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeecc
Q 013909 293 GDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGE 371 (434)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~ 371 (434)
+.. ...+|.+| .+.+.+.+.. ....+. .....+++.+++...+... -.+
T Consensus 378 ~~~------------------~~~l~~~d~~~~~~~~l~~---~~~~~~-~~~spdg~~l~~~~~~~~~--------p~~ 427 (706)
T 2z3z_A 378 SPL------------------ERHFYCIDIKGGKTKDLTP---ESGMHR-TQLSPDGSAIIDIFQSPTV--------PRK 427 (706)
T ss_dssp CTT------------------CBEEEEEETTCCCCEESCC---SSSEEE-EEECTTSSEEEEEEECSSC--------SCE
T ss_pred CCc------------------eEEEEEEEcCCCCceeccC---CCceEE-EEECCCCCEEEEEecCCCC--------CcE
Confidence 211 12588888 5556666642 111222 2233466666665433322 136
Q ss_pred EEEEECCCCc
Q 013909 372 VFQFHLDSLT 381 (434)
Q Consensus 372 v~~yd~~~~~ 381 (434)
++++|+++++
T Consensus 428 i~l~d~~~~~ 437 (706)
T 2z3z_A 428 VTVTNIGKGS 437 (706)
T ss_dssp EEEEESSSCE
T ss_pred EEEEECCCCe
Confidence 8888888776
No 127
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=93.70 E-value=1.2 Score=40.35 Aligned_cols=64 Identities=5% Similarity=0.003 Sum_probs=41.1
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe--CCEEEEEeccCCCCCCCCCceeEEEECC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~ 205 (434)
.+.+|+....+ ..+.+||+.+++.......+. ... .+++. ++.+|+.+.. ...++.+|+.
T Consensus 9 ~~~~~v~~~~~------~~v~~~d~~~~~~~~~~~~~~---~~~-~~~~s~dg~~l~~~~~~--------~~~i~~~d~~ 70 (331)
T 3u4y_A 9 SNFGIVVEQHL------RRISFFSTDTLEILNQITLGY---DFV-DTAITSDCSNVVVTSDF--------CQTLVQIETQ 70 (331)
T ss_dssp CCEEEEEEGGG------TEEEEEETTTCCEEEEEECCC---CEE-EEEECSSSCEEEEEEST--------TCEEEEEECS
T ss_pred CCEEEEEecCC------CeEEEEeCcccceeeeEEccC---Ccc-eEEEcCCCCEEEEEeCC--------CCeEEEEECC
Confidence 56788887643 358999999998765433332 222 34442 3458877542 2478999998
Q ss_pred CCce
Q 013909 206 TRKW 209 (434)
Q Consensus 206 t~~W 209 (434)
+.+-
T Consensus 71 ~~~~ 74 (331)
T 3u4y_A 71 LEPP 74 (331)
T ss_dssp SSSC
T ss_pred CCce
Confidence 8774
No 128
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=93.66 E-value=1.8 Score=43.09 Aligned_cols=26 Identities=8% Similarity=0.110 Sum_probs=18.6
Q ss_pred CCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEE
Q 013909 347 NNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSV 384 (434)
Q Consensus 347 ~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 384 (434)
+++.++.++.+ ..+.+||+.+.+-..
T Consensus 263 ~~~~l~~~~~d------------~~i~~wd~~~~~~~~ 288 (615)
T 1pgu_A 263 DSQKFATVGAD------------ATIRVWDVTTSKCVQ 288 (615)
T ss_dssp SSSEEEEEETT------------SEEEEEETTTTEEEE
T ss_pred CCCEEEEEcCC------------CcEEEEECCCCcEEE
Confidence 77778887754 268889988776544
No 129
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=93.63 E-value=4.3 Score=37.83 Aligned_cols=170 Identities=14% Similarity=0.153 Sum_probs=79.9
Q ss_pred ceeEEEECCCCceEecC--CCCCCcccce-EEEE---CCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCC
Q 013909 197 SRTFVLDSETRKWDSIP--PLPSPRYSPA-TQLW---RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIP 270 (434)
Q Consensus 197 ~~~~~yd~~t~~W~~~~--~~p~~r~~~~-~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p 270 (434)
..+..||..+.+-...- ..+....... .+.+ ++.+++.|+.++ .+.+|++. .....-.......
T Consensus 180 ~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~-----~v~~wd~~-----~~~~~~~~~~~h~ 249 (380)
T 3iz6_a 180 QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT-----TVRLWDLR-----ITSRAVRTYHGHE 249 (380)
T ss_dssp SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTS-----CEEEEETT-----TTCCCCEEECCCS
T ss_pred CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCC-----eEEEEECC-----CCCcceEEECCcC
Confidence 45778898887654331 2222222111 1122 567888887653 56677631 0111111111111
Q ss_pred CCCCceeEEE-ECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCC-eEEcCCCCC----CCCccceeE
Q 013909 271 RGGPHRACFV-FNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMK-WKVLPPMPK----PNSHIECAW 343 (434)
Q Consensus 271 ~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~-W~~~~~~p~----~r~~~~~~~ 343 (434)
.... +++. .+++.++.|+.++. +..+| .+.+ -..+...+. ........+
T Consensus 250 ~~v~--~v~~~p~~~~l~s~s~D~~----------------------i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 305 (380)
T 3iz6_a 250 GDIN--SVKFFPDGQRFGTGSDDGT----------------------CRLFDMRTGHQLQVYNREPDRNDNELPIVTSVA 305 (380)
T ss_dssp SCCC--EEEECTTSSEEEEECSSSC----------------------EEEEETTTTEEEEEECCCCSSSCCSSCSCSEEE
T ss_pred CCeE--EEEEecCCCeEEEEcCCCe----------------------EEEEECCCCcEEEEecccccccccccCceEEEE
Confidence 1111 2222 26778888887654 66777 4332 222211111 011112222
Q ss_pred EEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEE-eccCCCce---eeeeeEEECCEEEEEccccC
Q 013909 344 VIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSV-IGKLPYRI---KTTLTGFWDGWLYFTSGQRD 412 (434)
Q Consensus 344 ~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~-~~~lp~~r---~~~~~~~~~~~l~v~GG~~~ 412 (434)
...++++++.|+.++ .+.+||..+.+-.. +..+.... ........+++.++.|+.+.
T Consensus 306 ~s~~g~~l~~g~~dg------------~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~ 366 (380)
T 3iz6_a 306 FSISGRLLFAGYSNG------------DCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDK 366 (380)
T ss_dssp ECSSSSEEEEECTTS------------CEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTS
T ss_pred ECCCCCEEEEEECCC------------CEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCC
Confidence 345677888777542 68899987766433 22222211 11222234677777777544
No 130
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=93.61 E-value=4.7 Score=37.71 Aligned_cols=92 Identities=3% Similarity=-0.079 Sum_probs=45.7
Q ss_pred ceeeccCCCCcEEEcCCCCCCCCceeEEEE--CCEEEEEeccCCCCCceeeEEEEECCCCceE-ecCCCCCCCCceeeEE
Q 013909 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWV-DRFDMPKDMAHSHLGV 174 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~-~~~~~~~~~~r~~~~~ 174 (434)
.+..+|..+.+-... +......-..+.. ++++++.|+.++ .+.+||+.+.+-. .+.... ..-.++
T Consensus 120 ~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~s~d~------~i~iwd~~~~~~~~~~~~h~----~~v~~~ 187 (420)
T 3vl1_A 120 DIKVLDSNFNLQREI--DQAHVSEITKLKFFPSGEALISSSQDM------QLKIWSVKDGSNPRTLIGHR----ATVTDI 187 (420)
T ss_dssp CEEEECTTSCEEEEE--TTSSSSCEEEEEECTTSSEEEEEETTS------EEEEEETTTCCCCEEEECCS----SCEEEE
T ss_pred CEEEEeCCCcceeee--cccccCccEEEEECCCCCEEEEEeCCC------eEEEEeCCCCcCceEEcCCC----CcEEEE
Confidence 566666665543222 1112222222222 566777776542 4888998876421 111111 112233
Q ss_pred EEe-CCEEEEEeccCCCCCCCCCceeEEEECCCCce
Q 013909 175 VSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKW 209 (434)
Q Consensus 175 ~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W 209 (434)
+.. ++..++.|+.+ ..+..||..+.+-
T Consensus 188 ~~~~~~~~l~s~~~d--------~~v~iwd~~~~~~ 215 (420)
T 3vl1_A 188 AIIDRGRNVLSASLD--------GTIRLWECGTGTT 215 (420)
T ss_dssp EEETTTTEEEEEETT--------SCEEEEETTTTEE
T ss_pred EEcCCCCEEEEEcCC--------CcEEEeECCCCce
Confidence 333 55566666643 3577888877653
No 131
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=93.58 E-value=0.65 Score=43.83 Aligned_cols=103 Identities=12% Similarity=-0.029 Sum_probs=51.2
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEe-----cCCCCCCCCceeeEEEEe-CC-EEEEEeccCCCCCCCCCceeE
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVD-----RFDMPKDMAHSHLGVVSD-GR-YIYIVSGQYGPQCRGPTSRTF 200 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~-----~~~~~~~~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~ 200 (434)
++.+++.|+.++ .+.+||..++.... +..+.. ....-.+++.. ++ .+++.|+.+ ..+.
T Consensus 93 ~~~~l~s~s~dg------~v~vw~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~l~s~~~d--------g~i~ 157 (402)
T 2aq5_A 93 NDNVIASGSEDC------TVMVWEIPDGGLVLPLREPVITLEG-HTKRVGIVAWHPTAQNVLLSAGCD--------NVIL 157 (402)
T ss_dssp CTTEEEEEETTS------EEEEEECCTTCCSSCBCSCSEEEEC-CSSCEEEEEECSSBTTEEEEEETT--------SCEE
T ss_pred CCCEEEEEeCCC------eEEEEEccCCCCccccCCceEEecC-CCCeEEEEEECcCCCCEEEEEcCC--------CEEE
Confidence 567788877552 48888988875421 111111 01112233333 32 467777643 3578
Q ss_pred EEECCCCceEecCC-CCCCcccceEEEE-CCEEEEEcCCCCCCCCCCcceEE
Q 013909 201 VLDSETRKWDSIPP-LPSPRYSPATQLW-RGRLHVMGGSKENRHTPGLEHWS 250 (434)
Q Consensus 201 ~yd~~t~~W~~~~~-~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~ 250 (434)
+||..+.+....-. ......-.+++.. ++++++.|+.+ ..+.+|+
T Consensus 158 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd 204 (402)
T 2aq5_A 158 VWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD-----KRVRVIE 204 (402)
T ss_dssp EEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT-----SEEEEEE
T ss_pred EEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecC-----CcEEEEe
Confidence 89998876543211 1111111222222 56666666643 3455666
No 132
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=93.51 E-value=1.9 Score=39.37 Aligned_cols=66 Identities=8% Similarity=0.007 Sum_probs=36.6
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEec-CCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDR-FDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~-~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~ 205 (434)
++.+++.|+.++ .+.+||+.+.+-... ..+.. ....-.+++.. ++..++.|+.+ ..+..||..
T Consensus 127 ~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d--------g~i~i~d~~ 191 (366)
T 3k26_A 127 DPNLLLSVSKDH------ALRLWNIQTDTLVAIFGGVEG-HRDEVLSADYDLLGEKIMSCGMD--------HSLKLWRIN 191 (366)
T ss_dssp CTTEEEEEETTS------CEEEEETTTTEEEEEECSTTS-CSSCEEEEEECTTSSEEEEEETT--------SCEEEEESC
T ss_pred CCCEEEEEeCCC------eEEEEEeecCeEEEEeccccc-ccCceeEEEECCCCCEEEEecCC--------CCEEEEECC
Confidence 556777777643 388899988764332 11111 11222333333 45566666643 357788887
Q ss_pred CCc
Q 013909 206 TRK 208 (434)
Q Consensus 206 t~~ 208 (434)
+.+
T Consensus 192 ~~~ 194 (366)
T 3k26_A 192 SKR 194 (366)
T ss_dssp SHH
T ss_pred CCc
Confidence 643
No 133
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=93.47 E-value=5.2 Score=37.78 Aligned_cols=95 Identities=12% Similarity=0.117 Sum_probs=52.4
Q ss_pred ccceeeccCCCCcEEEcCCCCCCCCceeEEEE--CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeE
Q 013909 96 SATFADLPAPDLEWEQMPSAPVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLG 173 (434)
Q Consensus 96 ~~~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~ 173 (434)
...+..+|..+++...+-.+......-.++.. ++..++.|+.++ .+.++|..+.+-........ .+ ..
T Consensus 124 d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg------~v~iWd~~~~~~~~~~~~h~--~~--v~ 193 (420)
T 4gga_A 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA------EVQLWDVQQQKRLRNMTSHS--AR--VG 193 (420)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEEECCCS--SC--EE
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCC------eEEEEEcCCCcEEEEEeCCC--Cc--eE
Confidence 44677788888776655444433333333333 667778887653 38889998876433211111 12 22
Q ss_pred EEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCc
Q 013909 174 VVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK 208 (434)
Q Consensus 174 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~ 208 (434)
....++.+.+.|+.+ ..+..+|..+..
T Consensus 194 ~~s~~~~~l~sgs~d--------~~i~~~d~~~~~ 220 (420)
T 4gga_A 194 SLSWNSYILSSGSRS--------GHIHHHDVRVAE 220 (420)
T ss_dssp EEEEETTEEEEEETT--------SEEEEEETTSSS
T ss_pred EEeeCCCEEEEEeCC--------CceeEeeecccc
Confidence 233456666777643 356667765543
No 134
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=93.37 E-value=4 Score=36.16 Aligned_cols=39 Identities=10% Similarity=0.010 Sum_probs=20.0
Q ss_pred cEEEEECCCCceEEeccCCCceeeeeeEEECCEEEEEccc
Q 013909 371 EVFQFHLDSLTWSVIGKLPYRIKTTLTGFWDGWLYFTSGQ 410 (434)
Q Consensus 371 ~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~l~v~GG~ 410 (434)
.+.+||+.+.+....-..+...........+++ ++.|+.
T Consensus 247 ~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~ 285 (313)
T 3odt_A 247 TVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSS 285 (313)
T ss_dssp EEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEET
T ss_pred EEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeC
Confidence 688999988875543233322222222223556 344553
No 135
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=93.30 E-value=1.7 Score=41.20 Aligned_cols=82 Identities=11% Similarity=0.061 Sum_probs=46.1
Q ss_pred eEEEEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceE
Q 013909 146 HVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPAT 224 (434)
Q Consensus 146 ~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~ 224 (434)
.|+++|..+++-..+-.+... ...-.+++.. ++.+++.|+.+ ..+.+||.++.+-...- ........+
T Consensus 126 tV~lWd~~tg~~~~~~~~~~~-~~~V~sv~fspdg~~lasgs~D--------g~v~iWd~~~~~~~~~~--~~h~~~v~~ 194 (420)
T 4gga_A 126 SVYLWSASSGDILQLLQMEQP-GEYISSVAWIKEGNYLAVGTSS--------AEVQLWDVQQQKRLRNM--TSHSARVGS 194 (420)
T ss_dssp EEEEEETTTCCEEEEEECCST-TCCEEEEEECTTSSEEEEEETT--------SCEEEEETTTTEEEEEE--CCCSSCEEE
T ss_pred EEEEEECCCCCEEEEEEecCC-CCcEEEEEECCCCCEEEEEECC--------CeEEEEEcCCCcEEEEE--eCCCCceEE
Confidence 488999999887655443321 1122333333 56777777743 35788998887543321 111222233
Q ss_pred EEECCEEEEEcCCC
Q 013909 225 QLWRGRLHVMGGSK 238 (434)
Q Consensus 225 ~~~~~~iyv~GG~~ 238 (434)
...++++++.|+.+
T Consensus 195 ~s~~~~~l~sgs~d 208 (420)
T 4gga_A 195 LSWNSYILSSGSRS 208 (420)
T ss_dssp EEEETTEEEEEETT
T ss_pred EeeCCCEEEEEeCC
Confidence 45567777777654
No 136
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=93.23 E-value=2.5 Score=39.27 Aligned_cols=96 Identities=6% Similarity=-0.129 Sum_probs=49.7
Q ss_pred ceeeccCCCCcEEEcCCCCCCCCc-eeEEEE--CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEE
Q 013909 98 TFADLPAPDLEWEQMPSAPVPRLD-GAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGV 174 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R~~-~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~ 174 (434)
.+..+|..+.+....-........ .+++.. ++.+++.|+.++ .+.++|..++....+...... ...-.++
T Consensus 97 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~~~-~~~v~~~ 169 (383)
T 3ei3_B 97 DIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG------ATTLRDFSGSVIQVFAKTDSW-DYWYCCV 169 (383)
T ss_dssp CEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT------EEEEEETTSCEEEEEECCCCS-SCCEEEE
T ss_pred eEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC------EEEEEECCCCceEEEeccCCC-CCCeEEE
Confidence 566666666554443332212222 233333 346777776542 478899988776655433211 1112233
Q ss_pred EE-eCCEEEEEeccCCCCCCCCCceeEEEECCCCc
Q 013909 175 VS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK 208 (434)
Q Consensus 175 ~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~ 208 (434)
+. -++.+++.|+.+ ..+..||.....
T Consensus 170 ~~~~~~~~l~~~~~d--------~~i~i~d~~~~~ 196 (383)
T 3ei3_B 170 DVSVSRQMLATGDST--------GRLLLLGLDGHE 196 (383)
T ss_dssp EEETTTTEEEEEETT--------SEEEEEETTSCE
T ss_pred EECCCCCEEEEECCC--------CCEEEEECCCCE
Confidence 33 355666666642 468888885443
No 137
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=93.20 E-value=2.1 Score=40.22 Aligned_cols=99 Identities=8% Similarity=0.084 Sum_probs=52.4
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
+++.++.|+.++ .+.+||..+.+-...-.... ..-.+++.. ++..++.|+.+ ..+..||..+
T Consensus 134 dg~~l~s~~~d~------~i~iwd~~~~~~~~~~~~h~---~~v~~~~~~p~~~~l~s~s~d--------~~v~iwd~~~ 196 (393)
T 1erj_A 134 DGKFLATGAEDR------LIRIWDIENRKIVMILQGHE---QDIYSLDYFPSGDKLVSGSGD--------RTVRIWDLRT 196 (393)
T ss_dssp TSSEEEEEETTS------CEEEEETTTTEEEEEECCCS---SCEEEEEECTTSSEEEEEETT--------SEEEEEETTT
T ss_pred CCCEEEEEcCCC------eEEEEECCCCcEEEEEccCC---CCEEEEEEcCCCCEEEEecCC--------CcEEEEECCC
Confidence 667777777653 38889998876533211111 112233333 45555666532 4678889888
Q ss_pred CceEecCCCCCCcccceEEEE--CCEEEEEcCCCCCCCCCCcceEE
Q 013909 207 RKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWS 250 (434)
Q Consensus 207 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~ 250 (434)
.+....-.... .-.+++.. ++++++.|+.++ .+.+|+
T Consensus 197 ~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~s~d~-----~v~iwd 235 (393)
T 1erj_A 197 GQCSLTLSIED--GVTTVAVSPGDGKYIAAGSLDR-----AVRVWD 235 (393)
T ss_dssp TEEEEEEECSS--CEEEEEECSTTCCEEEEEETTS-----CEEEEE
T ss_pred CeeEEEEEcCC--CcEEEEEECCCCCEEEEEcCCC-----cEEEEE
Confidence 76543221111 11122222 567777776543 456666
No 138
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=93.17 E-value=2.5 Score=37.97 Aligned_cols=86 Identities=9% Similarity=-0.033 Sum_probs=49.7
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
++.||+..-.. ..+++||+.+++-.... .+. + -.+++.. ++++|+.. ...+.+||+.+
T Consensus 24 ~~~l~~~d~~~------~~i~~~d~~~~~~~~~~-~~~---~-~~~i~~~~dG~l~v~~----------~~~l~~~d~~~ 82 (297)
T 3g4e_A 24 SNSLLFVDIPA------KKVCRWDSFTKQVQRVT-MDA---P-VSSVALRQSGGYVATI----------GTKFCALNWKE 82 (297)
T ss_dssp TTEEEEEETTT------TEEEEEETTTCCEEEEE-CSS---C-EEEEEEBTTSSEEEEE----------TTEEEEEETTT
T ss_pred CCEEEEEECCC------CEEEEEECCCCcEEEEe-CCC---c-eEEEEECCCCCEEEEE----------CCeEEEEECCC
Confidence 46788875432 35899999988654432 221 1 2233443 56676642 14789999999
Q ss_pred CceEecCCCC----CCcccceEEEECCEEEEE
Q 013909 207 RKWDSIPPLP----SPRYSPATQLWRGRLHVM 234 (434)
Q Consensus 207 ~~W~~~~~~p----~~r~~~~~~~~~~~iyv~ 234 (434)
.+++.+...+ ..+....++.-++++|+.
T Consensus 83 g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~ 114 (297)
T 3g4e_A 83 QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAG 114 (297)
T ss_dssp TEEEEEEECCTTCSSEEEEEEEECTTSCEEEE
T ss_pred CcEEEEEecCCCCCCCCCCCEEECCCCCEEEe
Confidence 9887764332 122222223336788874
No 139
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=93.04 E-value=1.8 Score=44.53 Aligned_cols=67 Identities=6% Similarity=-0.036 Sum_probs=39.0
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCC---ceEecCCCCCCCCceeeEEEE-eCCEEEEEeccCCCCCCCCCceeEEEE
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDN---KWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLD 203 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~---~W~~~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd 203 (434)
+++.++++.. ..++++|..++ +-..+..... . -...+. -+++..+++. ...++++|
T Consensus 119 Dg~~l~~~~~-------~~i~~~d~~~~~~~~~~~l~~~~~---~-~~~~~~SPDG~~la~~~---------~~~i~~~d 178 (741)
T 2ecf_A 119 DAQRLLFPLG-------GELYLYDLKQEGKAAVRQLTHGEG---F-ATDAKLSPKGGFVSFIR---------GRNLWVID 178 (741)
T ss_dssp TSSEEEEEET-------TEEEEEESSSCSTTSCCBCCCSSS---C-EEEEEECTTSSEEEEEE---------TTEEEEEE
T ss_pred CCCEEEEEeC-------CcEEEEECCCCCcceEEEcccCCc---c-cccccCCCCCCEEEEEe---------CCcEEEEe
Confidence 6665555543 46999999987 5444433221 1 222232 2555444443 13799999
Q ss_pred CCCCceEecCC
Q 013909 204 SETRKWDSIPP 214 (434)
Q Consensus 204 ~~t~~W~~~~~ 214 (434)
..+.+...+..
T Consensus 179 ~~~g~~~~~~~ 189 (741)
T 2ecf_A 179 LASGRQMQLTA 189 (741)
T ss_dssp TTTTEEEECCC
T ss_pred cCCCCEEEecc
Confidence 99888776644
No 140
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=92.97 E-value=5.3 Score=36.46 Aligned_cols=63 Identities=8% Similarity=0.039 Sum_probs=34.3
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEE-eCCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
++++++.|+.++ .+.++|..+.+-...-+... ..-.+++. -++.+++.||.+ ..+..||..+
T Consensus 66 d~~~l~s~s~Dg------~v~iWd~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~s~~~d--------~~v~iw~~~~ 128 (340)
T 1got_B 66 DSRLLLSASQDG------KLIIWDSYTTNKVHAIPLRS---SWVMTCAYAPSGNYVACGGLD--------NICSIYNLKT 128 (340)
T ss_dssp TSSEEEEEETTT------EEEEEETTTCCEEEEEECSS---SCEEEEEECTTSSEEEEEETT--------CEEEEEETTT
T ss_pred CCCEEEEEeCCC------cEEEEECCCCCcceEeecCC---ccEEEEEECCCCCEEEEEeCC--------CeEEEEECcc
Confidence 566777777653 37788887765332211111 11222333 256666777743 4577788766
Q ss_pred C
Q 013909 207 R 207 (434)
Q Consensus 207 ~ 207 (434)
.
T Consensus 129 ~ 129 (340)
T 1got_B 129 R 129 (340)
T ss_dssp C
T ss_pred C
Confidence 4
No 141
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=92.84 E-value=3.2 Score=37.47 Aligned_cols=100 Identities=8% Similarity=0.033 Sum_probs=50.3
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCc----eEecCCCCCCCCceeeEEEEe-CCE-EEEEeccCCCCCCCCCceeEE
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNK----WVDRFDMPKDMAHSHLGVVSD-GRY-IYIVSGQYGPQCRGPTSRTFV 201 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~----W~~~~~~~~~~~r~~~~~~~~-~~~-lyv~GG~~~~~~~~~~~~~~~ 201 (434)
++.+++.|+.++ .+.+||..+.+ -....... ..-.+++.. ++. +++.|+.+ ..+.+
T Consensus 22 ~~~~l~~~~~d~------~v~iw~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~~~~~d--------g~i~~ 83 (342)
T 1yfq_A 22 SKSLLLITSWDG------SLTVYKFDIQAKNVDLLQSLRYK----HPLLCCNFIDNTDLQIYVGTVQ--------GEILK 83 (342)
T ss_dssp GGTEEEEEETTS------EEEEEEEETTTTEEEEEEEEECS----SCEEEEEEEESSSEEEEEEETT--------SCEEE
T ss_pred CCCEEEEEcCCC------eEEEEEeCCCCccccceeeeecC----CceEEEEECCCCCcEEEEEcCC--------CeEEE
Confidence 455666666442 37777776665 33222111 122233332 566 66666643 36888
Q ss_pred EEC-CCCceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEE
Q 013909 202 LDS-ETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWS 250 (434)
Q Consensus 202 yd~-~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 250 (434)
||. .+.+-..+...+....-.+++...+.+++.|+.+ ..+.+|+
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d-----~~i~iwd 128 (342)
T 1yfq_A 84 VDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD-----GLIEVID 128 (342)
T ss_dssp ECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETT-----SEEEEEC
T ss_pred EEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCC-----CeEEEEc
Confidence 998 8877665544212221122333325555666543 2455555
No 142
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=92.80 E-value=5.1 Score=35.81 Aligned_cols=31 Identities=10% Similarity=0.253 Sum_probs=20.6
Q ss_pred ECCEEEEEcCcCCCCCCccceeeeccEEEEECCCC-ceEEeccC
Q 013909 346 VNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSL-TWSVIGKL 388 (434)
Q Consensus 346 ~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~-~W~~~~~l 388 (434)
.++++++.||.++ .+.+||+.+. .|..+..+
T Consensus 316 ~~~~~l~s~~~dg------------~v~iw~~~~~~~~~~~~~~ 347 (351)
T 3f3f_A 316 LTGTILSSAGDDG------------KVRLWKATYSNEFKCMSVI 347 (351)
T ss_dssp SSSCCEEEEETTS------------CEEEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEecCCC------------cEEEEecCcCcchhheeeh
Confidence 3567777777553 5778887764 67776544
No 143
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=92.77 E-value=9.6 Score=38.91 Aligned_cols=239 Identities=9% Similarity=-0.018 Sum_probs=108.3
Q ss_pred ECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCC---CCCceeeEEEE-eCCEEEEEeccCCCCCCCCCceeEEE
Q 013909 127 IKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK---DMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVL 202 (434)
Q Consensus 127 ~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~---~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~y 202 (434)
-++++|.+--..+.. ...+|+.+....+|+.+.+.+. .....-.+.+. -+++..++.-..... .-..++++
T Consensus 78 dG~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~---~~~~i~v~ 152 (695)
T 2bkl_A 78 RNGRFFYVRTHKDKE--KAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAA---DEAVLHVI 152 (695)
T ss_dssp ETTEEEEEEECTTCS--SCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTC---SCCEEEEE
T ss_pred ECCEEEEEEEcCCCe--EEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCC---ceEEEEEE
Confidence 366666654333222 3458899988888887754322 00011122222 256655554322211 13689999
Q ss_pred ECCCCceEecCCCCCCcccceEEEECCEEEEEcCCCCC--------CCCCCcceEEEEeeccccccCce--EEccCCCCC
Q 013909 203 DSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKEN--------RHTPGLEHWSIAVKDGKALEKAW--RTEIPIPRG 272 (434)
Q Consensus 203 d~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~--------~~~~~~~~~~~~~~~~~~~~~~W--~~~~~~p~~ 272 (434)
|..+.+......++.......+..-+++.++++..... .....+..++ ..+..- ..+...+..
T Consensus 153 dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~-------l~t~~~~~~lv~~~~~~ 225 (695)
T 2bkl_A 153 DVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHT-------LGTEPSKDTVVHERTGD 225 (695)
T ss_dssp ETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEE-------TTSCGGGCEEEECCCCC
T ss_pred ECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEE-------CCCCchhceEEEecCCC
Confidence 99998764111222222122222335665555544321 0111122332 222221 122122211
Q ss_pred -CCceeEE-EECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEEECCE
Q 013909 273 -GPHRACF-VFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNS 349 (434)
Q Consensus 273 -~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~~~~ 349 (434)
....+.. .-+++.+++...... ...++|.+| ++..|+.+..-.... ...+..++.
T Consensus 226 ~~~~~~~~~SpDG~~l~~~~~~~~------------------~~~~l~~~~~~~~~~~~l~~~~~~~----~~~~~~~g~ 283 (695)
T 2bkl_A 226 PTTFLQSDLSRDGKYLFVYILRGW------------------SENDVYWKRPGEKDFRLLVKGVGAK----YEVHAWKDR 283 (695)
T ss_dssp TTCEEEEEECTTSCCEEEEEEETT------------------TEEEEEEECTTCSSCEEEEECSSCC----EEEEEETTE
T ss_pred CEEEEEEEECCCCCEEEEEEeCCC------------------CceEEEEEcCCCCceEEeecCCCce----EEEEecCCc
Confidence 1111222 225555555443221 123688888 566788775322211 122346777
Q ss_pred EEEEcCcCCCCCCccceeeeccEEEEECCCCc---eEEeccCCCceeeeeeEEECCEEEEEc
Q 013909 350 IIITGGTTEKHPMTKRMILVGEVFQFHLDSLT---WSVIGKLPYRIKTTLTGFWDGWLYFTS 408 (434)
Q Consensus 350 i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~---W~~~~~lp~~r~~~~~~~~~~~l~v~G 408 (434)
+|+....+... ..++++|+++.. |+.+.+-.....-..+...++++++..
T Consensus 284 l~~~s~~~~~~---------~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~ 336 (695)
T 2bkl_A 284 FYVLTDEGAPR---------QRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEY 336 (695)
T ss_dssp EEEEECTTCTT---------CEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEE
T ss_pred EEEEECCCCCC---------CEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEE
Confidence 55554332111 378999987765 887643211111122223366665554
No 144
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=92.76 E-value=6.5 Score=36.93 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=36.6
Q ss_pred EEEEECCC--CceEecCCCCCCCCceeeEEEEe---CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCC
Q 013909 147 VDVYNFTD--NKWVDRFDMPKDMAHSHLGVVSD---GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP 214 (434)
Q Consensus 147 v~~yd~~t--~~W~~~~~~~~~~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~ 214 (434)
+++++... .+|+.+.+... ...-+++++. .+.||+.+.. +. .-..+++.+-...+|+.+..
T Consensus 33 l~~~~~~~~g~~W~~~~~~~~--~~~v~~i~~dp~~~~~l~~g~~~-g~----~g~gl~~s~D~G~tW~~~~~ 98 (394)
T 3b7f_A 33 AWFLASDPARRTWELRGPVFL--GHTIHHIVQDPREPERMLMAART-GH----LGPTVFRSDDGGGNWTEATR 98 (394)
T ss_dssp EEEEEECTTSCSEEEEEEEST--TSEEEEEEECSSSTTCEEEEEEC-------CCEEEEEESSTTSCCEECSB
T ss_pred eEEEECCCCCCCceECCccCC--CCceEEEEECCCCCCeEEEEecC-CC----CCccEEEeCCCCCCceECCc
Confidence 67777655 78987642221 2334556654 5778886532 11 01357777777789998863
No 145
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=92.69 E-value=9.3 Score=39.18 Aligned_cols=98 Identities=16% Similarity=0.223 Sum_probs=58.6
Q ss_pred eeEEEECCEEEEEeccCCCCCceeeEEEEECCCCc--eEecCCCCCCCC------ceeeEEEEeCCEEEEEeccCCCCCC
Q 013909 122 GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMA------HSHLGVVSDGRYIYIVSGQYGPQCR 193 (434)
Q Consensus 122 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~------r~~~~~~~~~~~lyv~GG~~~~~~~ 193 (434)
.+-++.+++||+.... ..++.+|..|.+ |+.-...+.... ....+.++.+++||+...
T Consensus 64 ~~P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~------- 129 (689)
T 1yiq_A 64 ATPIVVDGVMYTTGPF-------SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL------- 129 (689)
T ss_dssp CCCEEETTEEEEECGG-------GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------
T ss_pred ecCEEECCEEEEEcCC-------CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc-------
Confidence 3445679999997642 348999998875 886433321000 011234667899988542
Q ss_pred CCCceeEEEECCCCc--eEecCC-CCC--CcccceEEEECCEEEEEc
Q 013909 194 GPTSRTFVLDSETRK--WDSIPP-LPS--PRYSPATQLWRGRLHVMG 235 (434)
Q Consensus 194 ~~~~~~~~yd~~t~~--W~~~~~-~p~--~r~~~~~~~~~~~iyv~G 235 (434)
...++.+|.+|.+ |+.-.. -+. .....+-++.++++|+-.
T Consensus 130 --dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~ 174 (689)
T 1yiq_A 130 --DGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGN 174 (689)
T ss_dssp --TSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECC
T ss_pred --CCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEe
Confidence 2568999998775 876543 111 122223456788888743
No 146
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=92.60 E-value=4.3 Score=37.07 Aligned_cols=65 Identities=6% Similarity=0.045 Sum_probs=38.5
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
++.+++.|+.++ .+.+||+.+.+-........ ...-.+++.. ++.+++.|+.+ ..+..||..+
T Consensus 138 ~~~~l~s~s~dg------~i~~wd~~~~~~~~~~~~~~--~~~i~~~~~~pdg~~lasg~~d--------g~i~iwd~~~ 201 (343)
T 3lrv_A 138 NTEYFIWADNRG------TIGFQSYEDDSQYIVHSAKS--DVEYSSGVLHKDSLLLALYSPD--------GILDVYNLSS 201 (343)
T ss_dssp -CCEEEEEETTC------CEEEEESSSSCEEEEECCCS--SCCCCEEEECTTSCEEEEECTT--------SCEEEEESSC
T ss_pred CCCEEEEEeCCC------cEEEEECCCCcEEEEEecCC--CCceEEEEECCCCCEEEEEcCC--------CEEEEEECCC
Confidence 456777777553 37889998877544322222 1112334443 66777777743 3578899887
Q ss_pred Cc
Q 013909 207 RK 208 (434)
Q Consensus 207 ~~ 208 (434)
.+
T Consensus 202 ~~ 203 (343)
T 3lrv_A 202 PD 203 (343)
T ss_dssp TT
T ss_pred CC
Confidence 65
No 147
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=92.58 E-value=3.6 Score=38.53 Aligned_cols=90 Identities=13% Similarity=0.051 Sum_probs=47.6
Q ss_pred EEEEEeccCCCCCceeeEEEEECCCCceEecCC-CCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCCC
Q 013909 130 LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFD-MPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (434)
Q Consensus 130 ~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~-~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~ 207 (434)
.+++.|+.++ .+.+||..+.+....-. ... ...-.+++.. ++.+++.|+.+ ..+.+||+.+.
T Consensus 145 ~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~ 208 (402)
T 2aq5_A 145 NVLLSAGCDN------VILVWDVGTGAAVLTLGPDVH--PDTIYSVDWSRDGALICTSCRD--------KRVRVIEPRKG 208 (402)
T ss_dssp TEEEEEETTS------CEEEEETTTTEEEEEECTTTC--CSCEEEEEECTTSSCEEEEETT--------SEEEEEETTTT
T ss_pred CEEEEEcCCC------EEEEEECCCCCccEEEecCCC--CCceEEEEECCCCCEEEEEecC--------CcEEEEeCCCC
Confidence 5777777653 38889999887543211 111 1222334443 56666666632 46889999887
Q ss_pred ceEecC-CCC-CCcccceEEEECCEEEEEc
Q 013909 208 KWDSIP-PLP-SPRYSPATQLWRGRLHVMG 235 (434)
Q Consensus 208 ~W~~~~-~~p-~~r~~~~~~~~~~~iyv~G 235 (434)
+-...- ... ..+....+..-++++++.|
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 238 (402)
T 2aq5_A 209 TVVAEKDRPHEGTRPVHAVFVSEGKILTTG 238 (402)
T ss_dssp EEEEEEECSSCSSSCCEEEECSTTEEEEEE
T ss_pred ceeeeeccCCCCCcceEEEEcCCCcEEEEe
Confidence 643221 111 1112222223367777776
No 148
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=92.49 E-value=10 Score=38.61 Aligned_cols=98 Identities=20% Similarity=0.309 Sum_probs=58.9
Q ss_pred eeEEEECCEEEEEeccCCCCCceeeEEEEECCCCc--eEecCCCCCCCC------ceeeEEEEeCCEEEEEeccCCCCCC
Q 013909 122 GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMA------HSHLGVVSDGRYIYIVSGQYGPQCR 193 (434)
Q Consensus 122 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~------r~~~~~~~~~~~lyv~GG~~~~~~~ 193 (434)
.+-++.+++||+.... ..++.+|..|.+ |+.-...+.... ....+.++.+++||+...
T Consensus 60 ~~P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------- 125 (668)
T 1kv9_A 60 ATPLFHDGVIYTSMSW-------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL------- 125 (668)
T ss_dssp CCCEEETTEEEEEEGG-------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-------
T ss_pred cCCEEECCEEEEECCC-------CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC-------
Confidence 3445679999998652 358999998875 886443321000 011234667899987532
Q ss_pred CCCceeEEEECCCCc--eEecCCCCC--CcccceEEEECCEEEEEc
Q 013909 194 GPTSRTFVLDSETRK--WDSIPPLPS--PRYSPATQLWRGRLHVMG 235 (434)
Q Consensus 194 ~~~~~~~~yd~~t~~--W~~~~~~p~--~r~~~~~~~~~~~iyv~G 235 (434)
...++.+|.+|.+ |+.-..-+. .....+.++.++++|+..
T Consensus 126 --dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~ 169 (668)
T 1kv9_A 126 --DGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGN 169 (668)
T ss_dssp --TSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECC
T ss_pred --CCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeC
Confidence 2578999998775 876542221 122233456788888753
No 149
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=92.46 E-value=1.5 Score=39.92 Aligned_cols=66 Identities=8% Similarity=0.044 Sum_probs=34.8
Q ss_pred EEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeC----CEEEEEeccCCCCCCCCCceeEEEECC
Q 013909 130 LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDG----RYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (434)
Q Consensus 130 ~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~----~~lyv~GG~~~~~~~~~~~~~~~yd~~ 205 (434)
++++.|+.+.. ...+.+||..+++......... ...-.+++... +.+++.|+.+ ..+..||..
T Consensus 32 ~l~~~~s~~~~---d~~v~iw~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~ 98 (357)
T 3i2n_A 32 KFVTMGNFARG---TGVIQLYEIQHGDLKLLREIEK--AKPIKCGTFGATSLQQRYLATGDFG--------GNLHIWNLE 98 (357)
T ss_dssp EEEEEEC--CC---CEEEEEEEECSSSEEEEEEEEE--SSCEEEEECTTCCTTTCCEEEEETT--------SCEEEECTT
T ss_pred eEEEecCccCC---CcEEEEEeCCCCcccceeeecc--cCcEEEEEEcCCCCCCceEEEecCC--------CeEEEEeCC
Confidence 56666654211 1358889998887654322221 11122333332 3667777643 357778877
Q ss_pred CCc
Q 013909 206 TRK 208 (434)
Q Consensus 206 t~~ 208 (434)
+.+
T Consensus 99 ~~~ 101 (357)
T 3i2n_A 99 APE 101 (357)
T ss_dssp SCS
T ss_pred CCC
Confidence 654
No 150
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=92.44 E-value=1.2 Score=41.52 Aligned_cols=65 Identities=8% Similarity=0.121 Sum_probs=35.6
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe--CCEEEEEeccCCCCCCCCCceeEEEECC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~ 205 (434)
++.+++.|+.++ .+.+||..+.+-......+. .......... ++.+++.|+.+ ..+..||..
T Consensus 111 ~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--------~~v~~~d~~ 174 (408)
T 4a11_B 111 DTGMFTSSSFDK------TLKVWDTNTLQTADVFNFEE--TVYSHHMSPVSTKHCLVAVGTRG--------PKVQLCDLK 174 (408)
T ss_dssp CTTCEEEEETTS------EEEEEETTTTEEEEEEECSS--CEEEEEECSSCSSCCEEEEEESS--------SSEEEEESS
T ss_pred CCcEEEEEeCCC------eEEEeeCCCCccceeccCCC--ceeeeEeecCCCCCcEEEEEcCC--------CeEEEEeCC
Confidence 445777776542 48889998877544333322 1112211111 34466666643 357888887
Q ss_pred CCc
Q 013909 206 TRK 208 (434)
Q Consensus 206 t~~ 208 (434)
+.+
T Consensus 175 ~~~ 177 (408)
T 4a11_B 175 SGS 177 (408)
T ss_dssp SSC
T ss_pred Ccc
Confidence 654
No 151
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=92.38 E-value=3.9 Score=39.15 Aligned_cols=40 Identities=3% Similarity=-0.017 Sum_probs=22.3
Q ss_pred cEEEEEC--C-CCceEEeccCCCceeeeeeEEECCEEEEEccc
Q 013909 371 EVFQFHL--D-SLTWSVIGKLPYRIKTTLTGFWDGWLYFTSGQ 410 (434)
Q Consensus 371 ~v~~yd~--~-~~~W~~~~~lp~~r~~~~~~~~~~~l~v~GG~ 410 (434)
.+.+|++ . ..++..+..++....-..++...+.+++..+.
T Consensus 331 ~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~ 373 (450)
T 2vdu_B 331 CIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDN 373 (450)
T ss_dssp EEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEECC
T ss_pred eEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEEec
Confidence 5788887 3 34566655444332233444455677776553
No 152
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=92.37 E-value=2.1 Score=47.09 Aligned_cols=173 Identities=8% Similarity=-0.018 Sum_probs=79.2
Q ss_pred CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccc
Q 013909 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGK 257 (434)
Q Consensus 178 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~ 257 (434)
++..+++|+.+ ..+..||..+.+...............+..-+++.++.|+.+ ..+.+|++
T Consensus 972 ~g~~l~~g~~~--------g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d-----g~i~vwd~------ 1032 (1249)
T 3sfz_A 972 HLEYVAFGDED--------GAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSED-----SVIQVWNW------ 1032 (1249)
T ss_dssp TSSEEEEEETT--------SCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSS-----SBEEEEET------
T ss_pred CCCEEEEEcCC--------CCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCC-----CEEEEEEC------
Confidence 45566666643 356788887765433221111111112223356667777654 34566763
Q ss_pred cccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCC-eEEcCCCCCC
Q 013909 258 ALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMK-WKVLPPMPKP 335 (434)
Q Consensus 258 ~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~-W~~~~~~p~~ 335 (434)
.+.+........... .++....+..++.|+.++ .+..+| .+.+ -..+.....+
T Consensus 1033 -~~~~~~~~~~~~~~v--~~~~~~~~~~l~~~~~dg----------------------~v~vwd~~~~~~~~~~~~~~~~ 1087 (1249)
T 3sfz_A 1033 -QTGDYVFLQAHQETV--KDFRLLQDSRLLSWSFDG----------------------TVKVWNVITGRIERDFTCHQGT 1087 (1249)
T ss_dssp -TTTEEECCBCCSSCE--EEEEECSSSEEEEEESSS----------------------EEEEEETTTTCCCEEEECCSSC
T ss_pred -CCCceEEEecCCCcE--EEEEEcCCCcEEEEECCC----------------------cEEEEECCCCceeEEEcccCCc
Confidence 344333222211111 133333444455666543 367777 4332 2222111111
Q ss_pred CCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccCCCceee--eeeEEECCEEEEEcccc
Q 013909 336 NSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKLPYRIKT--TLTGFWDGWLYFTSGQR 411 (434)
Q Consensus 336 r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~--~~~~~~~~~l~v~GG~~ 411 (434)
....+...+++.++.|+.++ .+.+||..+.+ .+..+...... ..+...++++++.|+.+
T Consensus 1088 ---v~~~~~s~d~~~l~s~s~d~------------~v~iwd~~~~~--~~~~l~~h~~~v~~~~~s~dg~~lat~~~d 1148 (1249)
T 3sfz_A 1088 ---VLSCAISSDATKFSSTSADK------------TAKIWSFDLLS--PLHELKGHNGCVRCSAFSLDGILLATGDDN 1148 (1249)
T ss_dssp ---CCCEEECSSSSSCEEECCSS------------CCCEECSSSSS--CSBCCCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred ---EEEEEECCCCCEEEEEcCCC------------cEEEEECCCcc--eeeeeccCCCcEEEEEECCCCCEEEEEeCC
Confidence 11122345677777887653 46677876654 22222221111 12222366777777644
No 153
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=92.21 E-value=4 Score=37.82 Aligned_cols=108 Identities=11% Similarity=0.028 Sum_probs=56.4
Q ss_pred ceeeccCCCCcEEEcCCCCCCCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeE-EE-
Q 013909 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLG-VV- 175 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~-~~- 175 (434)
.++.+|..+.+-..+...+...........+++.+++...+ ..++.+|+.+.+-..+...+. ...... .+
T Consensus 61 ~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~------~~l~~~d~~~g~~~~~~~~~~--~~~~~~~~~~ 132 (388)
T 3pe7_A 61 NYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG------RNLMRVDLATLEENVVYQVPA--EWVGYGTWVA 132 (388)
T ss_dssp EEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT------TEEEEEETTTCCEEEEEECCT--TEEEEEEEEE
T ss_pred eEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC------CeEEEEECCCCcceeeeechh--hcccccceeE
Confidence 57888888887777765443332222333355544444422 258999999987665554443 222111 11
Q ss_pred EeCCEEEEEeccCCCC--------------CCCCCceeEEEECCCCceEecC
Q 013909 176 SDGRYIYIVSGQYGPQ--------------CRGPTSRTFVLDSETRKWDSIP 213 (434)
Q Consensus 176 ~~~~~lyv~GG~~~~~--------------~~~~~~~~~~yd~~t~~W~~~~ 213 (434)
.-++++++.--..... .......++.+|+.+.+-+.+.
T Consensus 133 ~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 184 (388)
T 3pe7_A 133 NSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL 184 (388)
T ss_dssp CTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE
T ss_pred CCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee
Confidence 2234333311000000 0112368999999988766554
No 154
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=92.01 E-value=6.6 Score=39.55 Aligned_cols=99 Identities=13% Similarity=0.208 Sum_probs=56.5
Q ss_pred eeEEEECCEEEEEeccCCCCCceeeEEEEEC-CCCc--eEecCCCCCCC---C---ceeeEEEE--eCCE----EEEEec
Q 013909 122 GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNF-TDNK--WVDRFDMPKDM---A---HSHLGVVS--DGRY----IYIVSG 186 (434)
Q Consensus 122 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~-~t~~--W~~~~~~~~~~---~---r~~~~~~~--~~~~----lyv~GG 186 (434)
.+-++.++.||+.... ...++++|. .+.+ |+.-...+... . ....+.++ .+++ ||+...
T Consensus 56 ~tP~v~~g~vyv~~~~------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~ 129 (599)
T 1w6s_A 56 GAPLVVDGKMYIHTSF------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL 129 (599)
T ss_dssp SCCEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT
T ss_pred eccEEECCEEEEEeCC------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC
Confidence 3445679999998652 124899999 7775 98754332100 0 01123455 5776 887532
Q ss_pred cCCCCCCCCCceeEEEECCCCc--eEecCCCCCC--cccceEEEECCEEEEEc
Q 013909 187 QYGPQCRGPTSRTFVLDSETRK--WDSIPPLPSP--RYSPATQLWRGRLHVMG 235 (434)
Q Consensus 187 ~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~--r~~~~~~~~~~~iyv~G 235 (434)
...++.+|..|.+ |+.-..-+.. ....+-++.+++||+-.
T Consensus 130 ---------dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~ 173 (599)
T 1w6s_A 130 ---------DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGS 173 (599)
T ss_dssp ---------TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECC
T ss_pred ---------CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEe
Confidence 2568999988775 8754221111 11223345688887754
No 155
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=91.92 E-value=5.9 Score=35.76 Aligned_cols=68 Identities=13% Similarity=0.226 Sum_probs=41.1
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe--CCEEEEEeccCCCCCCCCCceeEEEECC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~ 205 (434)
++++|+.++.+ ..++++|+.+++....-+++. ....+.+++. ++.+|+.+.. ...+++||+.
T Consensus 10 ~~~~~v~~~~~------~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~~~v~~~~--------~~~i~~~d~~ 73 (349)
T 1jmx_B 10 GHEYMIVTNYP------NNLHVVDVASDTVYKSCVMPD--KFGPGTAMMAPDNRTAYVLNNH--------YGDIYGIDLD 73 (349)
T ss_dssp TCEEEEEEETT------TEEEEEETTTTEEEEEEECSS--CCSSCEEEECTTSSEEEEEETT--------TTEEEEEETT
T ss_pred CCEEEEEeCCC------CeEEEEECCCCcEEEEEecCC--CCCCceeEECCCCCEEEEEeCC--------CCcEEEEeCC
Confidence 67788887653 358999999987543322221 0012233443 3468877532 2578999998
Q ss_pred CCceEe
Q 013909 206 TRKWDS 211 (434)
Q Consensus 206 t~~W~~ 211 (434)
+.+-..
T Consensus 74 t~~~~~ 79 (349)
T 1jmx_B 74 TCKNTF 79 (349)
T ss_dssp TTEEEE
T ss_pred CCcEEE
Confidence 876543
No 156
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=91.88 E-value=3.5 Score=38.17 Aligned_cols=65 Identities=2% Similarity=-0.046 Sum_probs=36.5
Q ss_pred eeEEEEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCC
Q 013909 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP 214 (434)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~ 214 (434)
..++.+|+.+.+-..+...+. ...+....- +++.+++...... ......++.+|+.+...+.+..
T Consensus 168 ~~l~~~d~~~g~~~~l~~~~~---~~~~~~~sp~dg~~l~~~~~~~~--~~~~~~l~~~d~~~~~~~~l~~ 233 (388)
T 3pe7_A 168 CRLMRVDLKTGESTVILQENQ---WLGHPIYRPYDDSTVAFCHEGPH--DLVDARMWLINEDGTNMRKVKT 233 (388)
T ss_dssp EEEEEEETTTCCEEEEEEESS---CEEEEEEETTEEEEEEEEECSCT--TTSSCSEEEEETTSCCCEESCC
T ss_pred ceEEEEECCCCceEEeecCCc---cccccEECCCCCCEEEEEEecCC--CCCcceEEEEeCCCCceEEeee
Confidence 569999999987665543221 222222333 4544444332211 1124689999998877776654
No 157
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=91.82 E-value=13 Score=38.08 Aligned_cols=241 Identities=11% Similarity=0.085 Sum_probs=112.9
Q ss_pred ceeeccCCCCcEEEcCCCCCCCCceeEEEECCEEEEEeccCCC-------CCceeeEEEEECCCCce--EecCCCCC-CC
Q 013909 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSL-------DYVHSHVDVYNFTDNKW--VDRFDMPK-DM 167 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~-------~~~~~~v~~yd~~t~~W--~~~~~~~~-~~ 167 (434)
.++.+|..+++.... .++..+....+-. +++-+++.-.+.. ......++++++.+..= ..+...+. .
T Consensus 156 ~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~- 232 (693)
T 3iuj_A 156 EIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQ- 232 (693)
T ss_dssp EEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGG-
T ss_pred EEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCC-
Confidence 677778888776443 1121222233334 6643334333321 01234589888877642 12222111 0
Q ss_pred CceeeEEEE-eCCE-EEEEeccCCCCCCCCCceeEEEECCCC--ceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCC
Q 013909 168 AHSHLGVVS-DGRY-IYIVSGQYGPQCRGPTSRTFVLDSETR--KWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHT 243 (434)
Q Consensus 168 ~r~~~~~~~-~~~~-lyv~GG~~~~~~~~~~~~~~~yd~~t~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 243 (434)
+....++.. -+++ |++.... .. ..++++.+|..+. .|+.+.+-...... .....+++||+....+.
T Consensus 233 ~~~~~~~~~SpDg~~l~~~~~~-~~----~~~~i~~~d~~~~~~~~~~l~~~~~~~~~-~~~~~g~~l~~~t~~~~---- 302 (693)
T 3iuj_A 233 HHRYVGATVTEDDRFLLISAAN-ST----SGNRLYVKDLSQENAPLLTVQGDLDADVS-LVDNKGSTLYLLTNRDA---- 302 (693)
T ss_dssp CCSEEEEEECTTSCEEEEEEES-SS----SCCEEEEEETTSTTCCCEEEECSSSSCEE-EEEEETTEEEEEECTTC----
T ss_pred CeEEEEEEEcCCCCEEEEEEcc-CC----CCcEEEEEECCCCCCceEEEeCCCCceEE-EEeccCCEEEEEECCCC----
Confidence 111222222 3444 4443321 11 1368999998765 67776432222211 23456889999875432
Q ss_pred CCcceEEEEeeccccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-C
Q 013909 244 PGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-D 322 (434)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~ 322 (434)
....++..++.. +....|+.+.+-..... .....++.|++..-.++ ...++.+| .
T Consensus 303 ~~~~l~~~d~~~--~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g--------------------~~~l~~~d~~ 358 (693)
T 3iuj_A 303 PNRRLVTVDAAN--PGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDA--------------------TARVEQFDYE 358 (693)
T ss_dssp TTCEEEEEETTS--CCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETT--------------------EEEEEEECTT
T ss_pred CCCEEEEEeCCC--CCccccEEEecCCCCEE--EEEEECCEEEEEEEECC--------------------eeEEEEEECC
Confidence 122233322111 22345887665443322 44455677665543332 23588888 5
Q ss_pred CCCeEEcCCCCCCCCccceeEEEECC-EEEEE-cCcCCCCCCccceeeeccEEEEECCCCceEEecc
Q 013909 323 EMKWKVLPPMPKPNSHIECAWVIVNN-SIIIT-GGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGK 387 (434)
Q Consensus 323 ~~~W~~~~~~p~~r~~~~~~~~~~~~-~i~v~-GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 387 (434)
....+.+ .+|........+ ...++ .+++. .+.... .+++.||+++.+.+.+..
T Consensus 359 g~~~~~l-~~p~~~~~~~~~-~~~d~~~l~~~~ss~~tP----------~~l~~~d~~~g~~~~l~~ 413 (693)
T 3iuj_A 359 GKRVREV-ALPGLGSVSGFN-GKHDDPALYFGFENYAQP----------PTLYRFEPKSGAISLYRA 413 (693)
T ss_dssp SCEEEEE-CCSSSSEEEECC-CCTTCSCEEEEEECSSSC----------CEEEEECTTTCCEEEEEC
T ss_pred CCeeEEe-ecCCCceEEeee-cCCCCCEEEEEecCCCCC----------CEEEEEECCCCeEEEEEe
Confidence 4444444 233221111110 01123 33332 222211 379999999988877643
No 158
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=91.81 E-value=3.7 Score=37.17 Aligned_cols=95 Identities=7% Similarity=0.037 Sum_probs=53.3
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
+++||+.+..+ ..+++||+.+++...+.... ...-.+++.. ++++|+....... ....+++||+.+
T Consensus 55 ~g~l~~~~~~~------~~i~~~d~~~~~~~~~~~~~---~~~~~~i~~~~dg~l~v~~~~~~~----~~~~i~~~d~~~ 121 (333)
T 2dg1_A 55 QGQLFLLDVFE------GNIFKINPETKEIKRPFVSH---KANPAAIKIHKDGRLFVCYLGDFK----STGGIFAATENG 121 (333)
T ss_dssp TSCEEEEETTT------CEEEEECTTTCCEEEEEECS---SSSEEEEEECTTSCEEEEECTTSS----SCCEEEEECTTS
T ss_pred CCCEEEEECCC------CEEEEEeCCCCcEEEEeeCC---CCCcceEEECCCCcEEEEeCCCCC----CCceEEEEeCCC
Confidence 56788876532 25899999998877653211 1223344543 6788887542211 125789999988
Q ss_pred CceEe-cCCCCCCcccceEE-EECCEEEEEc
Q 013909 207 RKWDS-IPPLPSPRYSPATQ-LWRGRLHVMG 235 (434)
Q Consensus 207 ~~W~~-~~~~p~~r~~~~~~-~~~~~iyv~G 235 (434)
.+.+. +........-..++ .-++++|+..
T Consensus 122 ~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~ 152 (333)
T 2dg1_A 122 DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTD 152 (333)
T ss_dssp CSCEEEECSSSSCCCEEEEEECTTSCEEEEE
T ss_pred CEEEEEEccCccCCcccceEECCCCCEEEEe
Confidence 87653 23221111111222 2267888864
No 159
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=91.74 E-value=2 Score=36.76 Aligned_cols=53 Identities=15% Similarity=0.131 Sum_probs=31.4
Q ss_pred EEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEe--c----CCCCCCcccceEEEE--CCEEEEEcCC
Q 013909 173 GVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDS--I----PPLPSPRYSPATQLW--RGRLHVMGGS 237 (434)
Q Consensus 173 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~--~----~~~p~~r~~~~~~~~--~~~iyv~GG~ 237 (434)
+++..++++|+|=| ..+|+++.....+.. + +.+|..-. ++... ++++|+|-|.
T Consensus 28 Ai~~~~g~~y~Fkg----------~~~wr~~~~~~~~~p~~I~~~wp~Lp~~iD--Aa~~~~~~~~iyfFkG~ 88 (207)
T 1pex_A 28 AITSLRGETMIFKD----------RFFWRLHPQQVDAELFLTKSFWPELPNRID--AAYEHPSHDLIFIFRGR 88 (207)
T ss_dssp EEEEETTEEEEEET----------TEEEEECSSSSCCEEEEHHHHCTTSCSSCC--EEEEETTTTEEEEEETT
T ss_pred EEEeCCCcEEEEEC----------CEEEEEeCCCcCCCceehhHhccCCCCCcc--EEEEeccCCcEEEEccC
Confidence 45567999999966 467788765544321 1 23453211 22233 5899998764
No 160
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=91.64 E-value=2 Score=38.68 Aligned_cols=108 Identities=10% Similarity=0.118 Sum_probs=50.4
Q ss_pred ceeeccCCCCcEEEcCCCCCCC-CceeEEE-ECC-EEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCC--Cceee
Q 013909 98 TFADLPAPDLEWEQMPSAPVPR-LDGAAIQ-IKN-LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM--AHSHL 172 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R-~~~~~~~-~~~-~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~--~r~~~ 172 (434)
.+..+|..+.+-...-.++... .-..++. -++ .+|+.+..+ ..++++|+.+.+-...-+.+.+. ...-+
T Consensus 12 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~------~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~ 85 (337)
T 1pby_B 12 KLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKS------ESLVKIDLVTGETLGRIDLSTPEERVKSLF 85 (337)
T ss_dssp EEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTT------TEEEEEETTTCCEEEEEECCBTTEEEECTT
T ss_pred eEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCC------CeEEEEECCCCCeEeeEEcCCccccccccc
Confidence 5666777665433222222210 1122222 244 677776432 35899999887644321121100 00112
Q ss_pred EEEEe--CCEEEEEeccCCCC-CCC--CCceeEEEECCCCceEe
Q 013909 173 GVVSD--GRYIYIVSGQYGPQ-CRG--PTSRTFVLDSETRKWDS 211 (434)
Q Consensus 173 ~~~~~--~~~lyv~GG~~~~~-~~~--~~~~~~~yd~~t~~W~~ 211 (434)
.+++. ++.||+........ ... ....+.+||+.+.+...
T Consensus 86 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~ 129 (337)
T 1pby_B 86 GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK 129 (337)
T ss_dssp CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE
T ss_pred ceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEE
Confidence 23333 44777764211000 000 13689999998876543
No 161
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=91.59 E-value=10 Score=36.64 Aligned_cols=48 Identities=21% Similarity=0.375 Sum_probs=33.5
Q ss_pred CCEEEEEeccCCCCCCCCCceeEEEECCCCceEec--CCCCCCcccceEEEECCEEEEEcCCC
Q 013909 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSI--PPLPSPRYSPATQLWRGRLHVMGGSK 238 (434)
Q Consensus 178 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~--~~~p~~r~~~~~~~~~~~iyv~GG~~ 238 (434)
++++|+|-| +..|+||..+++.... +.+|. --++....+++|+|-|..
T Consensus 158 ~~~~yfFkG----------~~yw~yd~~~~~~~~~~w~gi~~---iDAA~~~~g~~YfFkG~~ 207 (460)
T 1qhu_A 158 DEGILFFQG----------NRKWFWDLTTGTKKERSWPAVGN---CTSALRWLGRYYCFQGNQ 207 (460)
T ss_dssp SSEEEEEET----------TEEEEEETTTTEEEEECCTTSCC---CSEEEEETTEEEEEETTE
T ss_pred CCeEEEEec----------ccEEEEecccceeecccCCCCCc---cchheeeCCceEEEECCE
Confidence 688999987 5789999988765432 22332 235556689999998753
No 162
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=91.52 E-value=12 Score=37.31 Aligned_cols=106 Identities=12% Similarity=0.104 Sum_probs=59.5
Q ss_pred cceeeccC-CCC--cEEEcCCCCCC-----C---CceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCc--eEecCCC
Q 013909 97 ATFADLPA-PDL--EWEQMPSAPVP-----R---LDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDM 163 (434)
Q Consensus 97 ~~~~~~~~-~~~--~W~~~~~~p~~-----R---~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~ 163 (434)
..++.+|. .++ .|+.-...+.. + ...+.++.+++||+... ...++++|..|.+ |+.-..-
T Consensus 73 ~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------dg~l~alD~~tG~~~W~~~~~~ 145 (571)
T 2ad6_A 73 NNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-------NGHLLALDAKTGKINWEVEVCD 145 (571)
T ss_dssp TCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------TSEEEEEETTTCCEEEEEECCC
T ss_pred CEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC-------CCEEEEEECCCCCEEEEecCCC
Confidence 36788887 665 68764433211 1 12234567899998643 1348999998875 8753221
Q ss_pred CCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCc--eEec
Q 013909 164 PKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK--WDSI 212 (434)
Q Consensus 164 ~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~--W~~~ 212 (434)
+........+-++.++.||+..+..+. .....++.||+++.+ |+.-
T Consensus 146 ~~~~~~~~~~P~v~~g~v~vg~~~~~~---~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 146 PKVGSTLTQAPFVAKDTVLMGCSGAEL---GVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp GGGTCBCCSCCEEETTEEEEECBCGGG---TCCCEEEEEETTTCCEEEEEE
T ss_pred CCccceeccCCEEECCEEEEEecCCcc---CCCCEEEEEECCCCcEEEEEc
Confidence 100001122234568888875432111 113578999998765 8654
No 163
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=91.46 E-value=4.4 Score=36.47 Aligned_cols=86 Identities=14% Similarity=0.237 Sum_probs=45.2
Q ss_pred EECCEEEEEeccCCCCCceeeEEEEECC-CCceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEE
Q 013909 126 QIKNLFYVFAGYGSLDYVHSHVDVYNFT-DNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLD 203 (434)
Q Consensus 126 ~~~~~iyv~GG~~~~~~~~~~v~~yd~~-t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd 203 (434)
..++.||+... + ..+++||+. ...|+...+.+ ...+.+.. ++.||+. .. ...+++||
T Consensus 105 ~~~~~l~v~t~-~------~~l~~~d~~g~~~~~~~~~~~-----~~~~~~~~~~g~l~vg-t~--------~~~l~~~d 163 (330)
T 3hxj_A 105 IFEDILYVTSM-D------GHLYAINTDGTEKWRFKTKKA-----IYATPIVSEDGTIYVG-SN--------DNYLYAIN 163 (330)
T ss_dssp EETTEEEEECT-T------SEEEEECTTSCEEEEEECSSC-----CCSCCEECTTSCEEEE-CT--------TSEEEEEC
T ss_pred EECCEEEEEec-C------CEEEEEcCCCCEEEEEcCCCc-----eeeeeEEcCCCEEEEE-cC--------CCEEEEEC
Confidence 34888887432 1 248899988 33476532211 11223444 6777773 21 24688899
Q ss_pred CCCC-ceEecCCCCCCcccceEEE-ECCEEEEEc
Q 013909 204 SETR-KWDSIPPLPSPRYSPATQL-WRGRLHVMG 235 (434)
Q Consensus 204 ~~t~-~W~~~~~~p~~r~~~~~~~-~~~~iyv~G 235 (434)
+... .|+...+ .... .+.+. .++.||+..
T Consensus 164 ~~g~~~~~~~~~--~~~~-~~~~~d~~g~l~v~t 194 (330)
T 3hxj_A 164 PDGTEKWRFKTN--DAIT-SAASIGKDGTIYFGS 194 (330)
T ss_dssp TTSCEEEEEECS--SCCC-SCCEECTTCCEEEES
T ss_pred CCCCEeEEEecC--CCce-eeeEEcCCCEEEEEe
Confidence 8722 3655422 1221 22233 367777764
No 164
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=91.17 E-value=2.2 Score=43.92 Aligned_cols=34 Identities=12% Similarity=-0.079 Sum_probs=22.0
Q ss_pred CCEEEEEecc-CCCCCceeeEEEEECCCCceEecCC
Q 013909 128 KNLFYVFAGY-GSLDYVHSHVDVYNFTDNKWVDRFD 162 (434)
Q Consensus 128 ~~~iyv~GG~-~~~~~~~~~v~~yd~~t~~W~~~~~ 162 (434)
+++.+++++. ++.. ....++++|+.+.+...+..
T Consensus 47 dG~~la~~~~~d~~~-~~~~i~~~d~~~g~~~~~~~ 81 (741)
T 2ecf_A 47 DGSRVTFLRGKDSDR-NQLDLWSYDIGSGQTRLLVD 81 (741)
T ss_dssp TSSEEEEEECCSSCT-TEEEEEEEETTTCCEEEEEC
T ss_pred CCCEEEEEeccCCCC-cccEEEEEECCCCceeEccc
Confidence 6666666655 4322 24469999999988766543
No 165
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=91.03 E-value=1 Score=43.11 Aligned_cols=103 Identities=12% Similarity=0.033 Sum_probs=54.6
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe--CCEEEEEeccCCCCCCCCCceeEEEECC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~ 205 (434)
++.+++.|+.++ .|.++|..+.+-..+..+... ...-.+++.. ++.+++.|+.++ .+-++|.+
T Consensus 131 ~~~~lasGs~dg------~i~lWd~~~~~~~~~~~~~gH-~~~V~~l~f~p~~~~~l~s~s~D~--------~v~iwd~~ 195 (435)
T 4e54_B 131 HPSTVAVGSKGG------DIMLWNFGIKDKPTFIKGIGA-GGSITGLKFNPLNTNQFYASSMEG--------TTRLQDFK 195 (435)
T ss_dssp CTTCEEEEETTS------CEEEECSSCCSCCEEECCCSS-SCCCCEEEECSSCTTEEEEECSSS--------CEEEEETT
T ss_pred CCCEEEEEeCCC------EEEEEECCCCCceeEEEccCC-CCCEEEEEEeCCCCCEEEEEeCCC--------EEEEeecc
Confidence 456888887664 378888887654332222110 1112334443 555666676543 46778988
Q ss_pred CCceEecCCCCC-CcccceEE-EECCEEEEEcCCCCCCCCCCcceEE
Q 013909 206 TRKWDSIPPLPS-PRYSPATQ-LWRGRLHVMGGSKENRHTPGLEHWS 250 (434)
Q Consensus 206 t~~W~~~~~~p~-~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~ 250 (434)
++....+..... .....++. .-++++++.|+.++ .+..|+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg-----~i~~wd 237 (435)
T 4e54_B 196 GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVG-----NVILLN 237 (435)
T ss_dssp SCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSS-----BEEEEE
T ss_pred CCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCC-----cEeeec
Confidence 776554432211 11112222 33667777877543 455666
No 166
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=90.97 E-value=1.9 Score=41.42 Aligned_cols=63 Identities=17% Similarity=0.315 Sum_probs=36.7
Q ss_pred CEEEEEeccCCCCCceeeEEEEECCCCceEec--CCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDR--FDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 129 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~--~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
+++++.|+.++ .+.+||+.+.+.... ..... +- .+++..++++++.|+.+ ..+.+||..+
T Consensus 210 ~~~l~s~~~d~------~i~vwd~~~~~~~~~~~~~h~~--~v--~~~~~sd~~~l~s~~~d--------~~v~vwd~~~ 271 (450)
T 2vdu_B 210 HQFIITSDRDE------HIKISHYPQCFIVDKWLFGHKH--FV--SSICCGKDYLLLSAGGD--------DKIFAWDWKT 271 (450)
T ss_dssp CEEEEEEETTS------CEEEEEESCTTCEEEECCCCSS--CE--EEEEECSTTEEEEEESS--------SEEEEEETTT
T ss_pred CcEEEEEcCCC------cEEEEECCCCceeeeeecCCCC--ce--EEEEECCCCEEEEEeCC--------CeEEEEECCC
Confidence 77888887652 478888887654321 11111 11 22222266666677632 4688899888
Q ss_pred Cce
Q 013909 207 RKW 209 (434)
Q Consensus 207 ~~W 209 (434)
.+.
T Consensus 272 ~~~ 274 (450)
T 2vdu_B 272 GKN 274 (450)
T ss_dssp CCE
T ss_pred CcE
Confidence 764
No 167
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=90.92 E-value=8.7 Score=34.54 Aligned_cols=110 Identities=8% Similarity=-0.012 Sum_probs=59.3
Q ss_pred cEEEcCCCCCCCCceeEEEE-CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEe
Q 013909 108 EWEQMPSAPVPRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVS 185 (434)
Q Consensus 108 ~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~G 185 (434)
..+.+..+|.......++.- ++.||+.--. ...+++||+.++. ......+ ..-+++++. +++||+..
T Consensus 21 ~~~~~~~~p~~~~pegia~~~~g~lyv~d~~------~~~I~~~d~~g~~-~~~~~~~----~~p~gia~~~dG~l~vad 89 (306)
T 2p4o_A 21 PAKIITSFPVNTFLENLASAPDGTIFVTNHE------VGEIVSITPDGNQ-QIHATVE----GKVSGLAFTSNGDLVATG 89 (306)
T ss_dssp CEEEEEEECTTCCEEEEEECTTSCEEEEETT------TTEEEEECTTCCE-EEEEECS----SEEEEEEECTTSCEEEEE
T ss_pred CceEeEeCCCCCCcceEEECCCCCEEEEeCC------CCeEEEECCCCce-EEEEeCC----CCceeEEEcCCCcEEEEe
Confidence 34444445544443444432 5678887421 2358999988753 2222222 223445554 57798875
Q ss_pred ccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEE-ECCEEEEE
Q 013909 186 GQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQL-WRGRLHVM 234 (434)
Q Consensus 186 G~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~iyv~ 234 (434)
.... ...+++||+.+.+.+.+...+..+.....+. .++.+|+.
T Consensus 90 ~~~~------~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~ 133 (306)
T 2p4o_A 90 WNAD------SIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTA 133 (306)
T ss_dssp ECTT------SCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEE
T ss_pred ccCC------cceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEE
Confidence 3110 1358889988888877655554444333332 24456665
No 168
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=90.71 E-value=3 Score=35.30 Aligned_cols=53 Identities=15% Similarity=0.254 Sum_probs=31.2
Q ss_pred EEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCC--ceE--ec----CCCCCCcccceEEEE--CCEEEEEcCC
Q 013909 173 GVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR--KWD--SI----PPLPSPRYSPATQLW--RGRLHVMGGS 237 (434)
Q Consensus 173 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~--~W~--~~----~~~p~~r~~~~~~~~--~~~iyv~GG~ 237 (434)
+++..++++|+|=| +.+|+++.... ... .+ +.+|..-. ++... ++++|+|-|.
T Consensus 11 Ai~~~~g~~yfFkg----------~~~Wr~~~~~~~~~~~p~~Is~~w~glP~~ID--Aa~~~~~~~~~yfFkG~ 73 (195)
T 1itv_A 11 AIAEIGNQLYLFKD----------GKYWRFSEGRGSRPQGPFLIADKWPALPRKLD--SVFEEPLSKKLFFFSGR 73 (195)
T ss_dssp EEEEETTEEEEEET----------TEEEEECCSSSCCCEEEEEHHHHCTTSCSSCS--EEEECTTTCCEEEEETT
T ss_pred EEEEeCCEEEEEEC----------CEEEEEECCccccCCCcEEhhhccCCCCCCcc--EEEEECCCCeEEEEeCC
Confidence 45567999999976 56788877552 221 11 23453221 22222 6789988764
No 169
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=90.61 E-value=5 Score=37.00 Aligned_cols=101 Identities=13% Similarity=0.163 Sum_probs=51.1
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe--CCEEEEEeccCCCCCCCCCceeEEEECC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~ 205 (434)
+++.++.|+.++ .+.++|+.+++-... +..- ...-.+++.. +..+++.|+.+ ..+.+||..
T Consensus 138 dg~~l~sgs~d~------~i~iwd~~~~~~~~~--~~~h-~~~V~~~~~~~~~~~~l~s~s~D--------~~v~iwd~~ 200 (344)
T 4gqb_B 138 SGTQAVSGSKDI------CIKVWDLAQQVVLSS--YRAH-AAQVTCVAASPHKDSVFLSCSED--------NRILLWDTR 200 (344)
T ss_dssp TSSEEEEEETTS------CEEEEETTTTEEEEE--ECCC-SSCEEEEEECSSCTTEEEEEETT--------SCEEEEETT
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEE--EcCc-CCceEEEEecCCCCCceeeeccc--------ccccccccc
Confidence 667777777653 378889988764321 1110 0111223332 34577777743 357788988
Q ss_pred CCceEecCCCCCCcccc-eEEE--ECCEEEEEcCCCCCCCCCCcceEE
Q 013909 206 TRKWDSIPPLPSPRYSP-ATQL--WRGRLHVMGGSKENRHTPGLEHWS 250 (434)
Q Consensus 206 t~~W~~~~~~p~~r~~~-~~~~--~~~~iyv~GG~~~~~~~~~~~~~~ 250 (434)
+.+-...-......... +++. .++++++.|+.++ .+.+||
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg-----~v~~wd 243 (344)
T 4gqb_B 201 CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG-----TVSLVD 243 (344)
T ss_dssp SSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS-----EEEEEE
T ss_pred ccceeeeeecceeeccceeeeecCCCCcceEEeccCC-----cEEEEE
Confidence 76643321111111111 2222 2456777776543 456666
No 170
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=90.12 E-value=10 Score=38.74 Aligned_cols=243 Identities=10% Similarity=0.002 Sum_probs=112.3
Q ss_pred ceeeccCCCCcEEEcCCCCCC---C-Ccee--EEEECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCcee
Q 013909 98 TFADLPAPDLEWEQMPSAPVP---R-LDGA--AIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSH 171 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~---R-~~~~--~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~ 171 (434)
.++..+.....|+.+.+.+.- . .... ..+-+++.+++.-...... ...++++|..+++......++. ...
T Consensus 95 ~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~-~~~i~v~dl~tg~~~~~~~~~~--~~~- 170 (695)
T 2bkl_A 95 ILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAAD-EAVLHVIDVDSGEWSKVDVIEG--GKY- 170 (695)
T ss_dssp EEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCS-CCEEEEEETTTCCBCSSCCBSC--CTT-
T ss_pred EEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCc-eEEEEEEECCCCCCcCCcccCc--ccc-
Confidence 345555555566666543221 1 1111 1222666666544322111 2359999999988641111211 111
Q ss_pred eEEEE-eCCEEEEEeccCCCCC-----CCCCceeEEEECCCCce--EecCCCCCC-cccceEE-EECCEEEEEcCCCCCC
Q 013909 172 LGVVS-DGRYIYIVSGQYGPQC-----RGPTSRTFVLDSETRKW--DSIPPLPSP-RYSPATQ-LWRGRLHVMGGSKENR 241 (434)
Q Consensus 172 ~~~~~-~~~~lyv~GG~~~~~~-----~~~~~~~~~yd~~t~~W--~~~~~~p~~-r~~~~~~-~~~~~iyv~GG~~~~~ 241 (434)
...+. -+++.++++..+.... .....++++++..+.+- +.+...+.. ....... .-+++..++......
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~- 249 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGW- 249 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETT-
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCC-
Confidence 22333 2555555555433210 01235699999887652 233222221 2222222 234554444332211
Q ss_pred CCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC
Q 013909 242 HTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD 321 (434)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 321 (434)
...++|.+ +..+..|+.+.+-..... ..+..++.+|+....+.. ...++.+|
T Consensus 250 --~~~~l~~~-----~~~~~~~~~l~~~~~~~~--~~~~~~g~l~~~s~~~~~-------------------~~~l~~~d 301 (695)
T 2bkl_A 250 --SENDVYWK-----RPGEKDFRLLVKGVGAKY--EVHAWKDRFYVLTDEGAP-------------------RQRVFEVD 301 (695)
T ss_dssp --TEEEEEEE-----CTTCSSCEEEEECSSCCE--EEEEETTEEEEEECTTCT-------------------TCEEEEEB
T ss_pred --CceEEEEE-----cCCCCceEEeecCCCceE--EEEecCCcEEEEECCCCC-------------------CCEEEEEe
Confidence 22334432 244556766554332222 333356776555433211 23588888
Q ss_pred -CCC---CeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEe
Q 013909 322 -DEM---KWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVI 385 (434)
Q Consensus 322 -~~~---~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 385 (434)
.+. .|+.+.+... .... ..+...++++++....+.. ..++++++....-..+
T Consensus 302 ~~~~~~~~~~~l~~~~~-~~~l-~~~~~~~~~lv~~~~~dg~----------~~l~~~~~~g~~~~~l 357 (695)
T 2bkl_A 302 PAKPARASWKEIVPEDS-SASL-LSVSIVGGHLSLEYLKDAT----------SEVRVATLKGKPVRTV 357 (695)
T ss_dssp TTBCSGGGCEEEECCCS-SCEE-EEEEEETTEEEEEEEETTE----------EEEEEEETTCCEEEEC
T ss_pred CCCCCccCCeEEecCCC-CCeE-EEEEEECCEEEEEEEECCE----------EEEEEEeCCCCeeEEe
Confidence 443 3887743211 1111 1234558888887765432 3688888765544443
No 171
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=90.11 E-value=4.2 Score=40.42 Aligned_cols=63 Identities=19% Similarity=0.236 Sum_probs=38.0
Q ss_pred ECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe--CCEEEEEeccCCCCCCCCCceeEEEEC
Q 013909 127 IKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDS 204 (434)
Q Consensus 127 ~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~ 204 (434)
.++++|+.+..+ ..+.++|..+.+-...-+... .-|++++. +..||+.+. -..+.+||+
T Consensus 147 p~~~~~vs~~~d------~~V~v~D~~t~~~~~~i~~g~----~~~~v~~spdg~~l~v~~~---------d~~V~v~D~ 207 (543)
T 1nir_A 147 LPNLFSVTLRDA------GQIALVDGDSKKIVKVIDTGY----AVHISRMSASGRYLLVIGR---------DARIDMIDL 207 (543)
T ss_dssp GGGEEEEEEGGG------TEEEEEETTTCCEEEEEECST----TEEEEEECTTSCEEEEEET---------TSEEEEEET
T ss_pred CCCEEEEEEcCC------CeEEEEECCCceEEEEEecCc----ccceEEECCCCCEEEEECC---------CCeEEEEEC
Confidence 367888887643 348889999876432211111 14555443 456776643 157899999
Q ss_pred --CCCc
Q 013909 205 --ETRK 208 (434)
Q Consensus 205 --~t~~ 208 (434)
.+.+
T Consensus 208 ~~~t~~ 213 (543)
T 1nir_A 208 WAKEPT 213 (543)
T ss_dssp TSSSCE
T ss_pred cCCCCc
Confidence 6654
No 172
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=89.92 E-value=17 Score=36.42 Aligned_cols=202 Identities=9% Similarity=-0.117 Sum_probs=95.0
Q ss_pred eeEEEEECC--C-CceEecCCCCCCC-CceeeEEEE-eCCEEEEEeccCCC--CCCCCCceeEEEECCC------CceEe
Q 013909 145 SHVDVYNFT--D-NKWVDRFDMPKDM-AHSHLGVVS-DGRYIYIVSGQYGP--QCRGPTSRTFVLDSET------RKWDS 211 (434)
Q Consensus 145 ~~v~~yd~~--t-~~W~~~~~~~~~~-~r~~~~~~~-~~~~lyv~GG~~~~--~~~~~~~~~~~yd~~t------~~W~~ 211 (434)
..+|.+|.. + .+-..+...+... .......+. -+++.+++...+.. .......+++.+|..+ .+-+.
T Consensus 102 ~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 181 (662)
T 3azo_A 102 QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRE 181 (662)
T ss_dssp CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEE
T ss_pred CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeE
Confidence 358999987 4 6666666543110 111222333 34444444433210 0011236899999988 66666
Q ss_pred cC-CCCCCcccceEEEECCEEEEEcCCCCCC-C--CCCcceEEEEeeccccc-cC---ceEEccCCCCCCCceeEEE-EC
Q 013909 212 IP-PLPSPRYSPATQLWRGRLHVMGGSKENR-H--TPGLEHWSIAVKDGKAL-EK---AWRTEIPIPRGGPHRACFV-FN 282 (434)
Q Consensus 212 ~~-~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~--~~~~~~~~~~~~~~~~~-~~---~W~~~~~~p~~~~~~~~~~-~~ 282 (434)
+. .-+. ........-+++.+++....... . ...+.+++ .. +. +...+..-.... ...... -+
T Consensus 182 l~~~~~~-~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d-------~~~~g~~~~~~~l~~~~~~~-~~~~~~spd 252 (662)
T 3azo_A 182 LSDDAHR-FVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTAR-------VTEDGRFADTRTLLGGPEEA-IAQAEWAPD 252 (662)
T ss_dssp SSCSCSS-EECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEE-------ECTTSCEEEEEEEEEETTBC-EEEEEECTT
T ss_pred EEecCCC-cccCceECCCCCEEEEEECCCCCCCCCCcEEEEEE-------ECCCCcccccEEeCCCCCce-EcceEECCC
Confidence 65 3221 11111223355544443322211 0 11233333 22 23 222322211111 112222 27
Q ss_pred CEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCCC----Ccc-ceeEEEE-CCEEEEEcC
Q 013909 283 DRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPN----SHI-ECAWVIV-NNSIIITGG 355 (434)
Q Consensus 283 ~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r----~~~-~~~~~~~-~~~i~v~GG 355 (434)
+++|+.+..++. ..+|.+| .+.+++.+.+..... ... ..+++.. ++++++.+.
T Consensus 253 g~l~~~~~~~~~--------------------~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~ 312 (662)
T 3azo_A 253 GSLIVATDRTGW--------------------WNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHG 312 (662)
T ss_dssp SCEEEEECTTSS--------------------CEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEB
T ss_pred CeEEEEECCCCC--------------------eEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEE
Confidence 777776654432 2599999 677888875432111 100 0122333 677777765
Q ss_pred cCCCCCCccceeeeccEEEEECCCCceEEec
Q 013909 356 TTEKHPMTKRMILVGEVFQFHLDSLTWSVIG 386 (434)
Q Consensus 356 ~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~ 386 (434)
. +. ..+|.+|+++...+.+.
T Consensus 313 ~-~~----------~~l~~~d~~~~~~~~l~ 332 (662)
T 3azo_A 313 K-GA----------AVLGILDPESGELVDAA 332 (662)
T ss_dssp S-SS----------CEEEEEETTTTEEEECC
T ss_pred c-Cc----------cEEEEEECCCCcEEEec
Confidence 4 32 26888899888876663
No 173
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=89.72 E-value=5.1 Score=39.77 Aligned_cols=92 Identities=10% Similarity=0.048 Sum_probs=46.3
Q ss_pred cceeeccCCCCcEEEcCCCCCCCCceeEEEE-CC-EEEEEeccCCCCCceeeEEEEEC--CCCceEecCCCCCCCCceee
Q 013909 97 ATFADLPAPDLEWEQMPSAPVPRLDGAAIQI-KN-LFYVFAGYGSLDYVHSHVDVYNF--TDNKWVDRFDMPKDMAHSHL 172 (434)
Q Consensus 97 ~~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~--~t~~W~~~~~~~~~~~r~~~ 172 (434)
..+..+|..+++-.. .++....-|.++.. ++ .+|+.+. + +.+.+||+ .+.+- +..++. ...-.
T Consensus 159 ~~V~v~D~~t~~~~~--~i~~g~~~~~v~~spdg~~l~v~~~-d------~~V~v~D~~~~t~~~--~~~i~~--g~~p~ 225 (543)
T 1nir_A 159 GQIALVDGDSKKIVK--VIDTGYAVHISRMSASGRYLLVIGR-D------ARIDMIDLWAKEPTK--VAEIKI--GIEAR 225 (543)
T ss_dssp TEEEEEETTTCCEEE--EEECSTTEEEEEECTTSCEEEEEET-T------SEEEEEETTSSSCEE--EEEEEC--CSEEE
T ss_pred CeEEEEECCCceEEE--EEecCcccceEEECCCCCEEEEECC-C------CeEEEEECcCCCCcE--EEEEec--CCCcc
Confidence 356677777765422 12212223444333 44 5666543 2 45899999 66543 222222 22223
Q ss_pred EEEEe-----CC-EEEEEeccCCCCCCCCCceeEEEECCCCce
Q 013909 173 GVVSD-----GR-YIYIVSGQYGPQCRGPTSRTFVLDSETRKW 209 (434)
Q Consensus 173 ~~~~~-----~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W 209 (434)
.+++. ++ .||+. .+. ...+.++|..+.+-
T Consensus 226 ~va~sp~~~~dg~~l~v~-~~~-------~~~v~v~D~~t~~~ 260 (543)
T 1nir_A 226 SVESSKFKGYEDRYTIAG-AYW-------PPQFAIMDGETLEP 260 (543)
T ss_dssp EEEECCSTTCTTTEEEEE-EEE-------SSEEEEEETTTCCE
T ss_pred eEEeCCCcCCCCCEEEEE-Ecc-------CCeEEEEecccccc
Confidence 34443 44 56654 321 25677889887764
No 174
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=89.62 E-value=1.6 Score=40.62 Aligned_cols=104 Identities=13% Similarity=0.088 Sum_probs=51.3
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCC----------CCCCCCceeeEEEEe--CCEEEEEeccCCCCCCCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFD----------MPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGP 195 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~----------~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~ 195 (434)
++.+++.|+.++ .+.+||..+.+...... .+......-.+++.. ++.+++.|+.+
T Consensus 55 ~~~~l~~~~~dg------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------- 121 (408)
T 4a11_B 55 EGRYMLSGGSDG------VIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD------- 121 (408)
T ss_dssp TCCEEEEEETTS------CEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT-------
T ss_pred CCCEEEEEcCCC------eEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC-------
Confidence 567778877653 37888888765322110 000001122233333 45566666642
Q ss_pred CceeEEEECCCCceEecCCCCCCcccceEEEE--CCEEEEEcCCCCCCCCCCcceEE
Q 013909 196 TSRTFVLDSETRKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWS 250 (434)
Q Consensus 196 ~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~ 250 (434)
..+..||..+.+-...-..+.+......... ++.+++.|+.++ .+..|+
T Consensus 122 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~d 172 (408)
T 4a11_B 122 -KTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGP-----KVQLCD 172 (408)
T ss_dssp -SEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSS-----SEEEEE
T ss_pred -CeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCC-----eEEEEe
Confidence 4678899888765444333222221111111 344666665542 455666
No 175
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=89.45 E-value=6 Score=38.94 Aligned_cols=61 Identities=10% Similarity=-0.031 Sum_probs=31.3
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEE-eCCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
+++.++.|+.++ .+..||.....-..+..... .-.+++. -+++.++.|+.+ ..+..||...
T Consensus 355 ~g~~l~~~~~dg------~v~~~~~~~~~~~~~~~~~~----~v~~~~~s~dg~~l~~~~~d--------~~v~~~~~~~ 416 (577)
T 2ymu_A 355 DGQTIASASDDK------TVKLWNRNGQLLQTLTGHSS----SVRGVAFSPDGQTIASASDD--------KTVKLWNRNG 416 (577)
T ss_dssp TSSEEEEEETTS------EEEEEETTCCEEEEEECCSS----CEEEEEECTTSSCEEEEETT--------SEEEEECTTC
T ss_pred CCCEEEEEeCCC------EEEEEcCCCCEEEEecCCCC----CeEEEEECCCCCEEEEEeCC--------CEEEEEeCCC
Confidence 566677776542 36778866554443332221 1122333 256666666632 3566777543
No 176
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=89.42 E-value=19 Score=36.06 Aligned_cols=75 Identities=21% Similarity=0.402 Sum_probs=47.8
Q ss_pred eeEEEECCEEEEEeccCCCCCceeeEEEEECCCCc--eEecCCCCCCC-Cc---eeeEEEEeCCEEEEEeccCCCCCCCC
Q 013909 122 GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDM-AH---SHLGVVSDGRYIYIVSGQYGPQCRGP 195 (434)
Q Consensus 122 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~-~r---~~~~~~~~~~~lyv~GG~~~~~~~~~ 195 (434)
.+-++.+++||+..... .++++|..|.+ |+.-...+... +. ...+.++.+++||+...
T Consensus 62 ~~P~v~~g~vyv~~~~~-------~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~--------- 125 (582)
T 1flg_A 62 SQAIVSDGVIYVTASYS-------RLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL--------- 125 (582)
T ss_dssp CCCEEETTEEEEEETTT-------EEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET---------
T ss_pred eccEEECCEEEEEcCCC-------CEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC---------
Confidence 34456799999986532 38999998875 87644332210 00 11234568899988532
Q ss_pred CceeEEEECCCCc--eEec
Q 013909 196 TSRTFVLDSETRK--WDSI 212 (434)
Q Consensus 196 ~~~~~~yd~~t~~--W~~~ 212 (434)
...++.+|.+|.+ |+.-
T Consensus 126 dg~l~AlD~~TG~~~W~~~ 144 (582)
T 1flg_A 126 DASVVALNKNTGKVVWKKK 144 (582)
T ss_dssp TTEEEEEESSSCCEEEEEE
T ss_pred CCEEEEEECCCCCEEeeec
Confidence 2578999998875 8754
No 177
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=89.37 E-value=10 Score=34.92 Aligned_cols=94 Identities=5% Similarity=-0.060 Sum_probs=45.9
Q ss_pred EEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCC-CCcccceEEEE--CCEEEEEcCCCCCCCCCCcceEEEEeecc
Q 013909 180 YIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP-SPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSIAVKDG 256 (434)
Q Consensus 180 ~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~ 256 (434)
++++.|+.+ ..+.+||..+.+....-... ....-.+++.. ++++++.|+.+ ..+.+|++
T Consensus 87 ~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~----- 148 (383)
T 3ei3_B 87 TTVAVGSKG--------GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR-----GATTLRDF----- 148 (383)
T ss_dssp TEEEEEEBT--------SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT-----TEEEEEET-----
T ss_pred CEEEEEcCC--------CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC-----CEEEEEEC-----
Confidence 566677643 35788898877765543321 22222233333 34666766554 34556663
Q ss_pred ccccCceEEccCCCCCCCce-eEE-EECCEEEEEcCCCC
Q 013909 257 KALEKAWRTEIPIPRGGPHR-ACF-VFNDRLFVVGGQEG 293 (434)
Q Consensus 257 ~~~~~~W~~~~~~p~~~~~~-~~~-~~~~~iyv~GG~~~ 293 (434)
.+................ +++ ..++++++.|+.++
T Consensus 149 --~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 185 (383)
T 3ei3_B 149 --SGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTG 185 (383)
T ss_dssp --TSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTS
T ss_pred --CCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCC
Confidence 233333332222111111 222 22677778887654
No 178
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=89.27 E-value=15 Score=34.64 Aligned_cols=135 Identities=10% Similarity=0.117 Sum_probs=71.8
Q ss_pred CCCceEe--cCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEE-ccC-CCCCCCceeEEE
Q 013909 205 ETRKWDS--IPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRT-EIP-IPRGGPHRACFV 280 (434)
Q Consensus 205 ~t~~W~~--~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~-~~~-~p~~~~~~~~~~ 280 (434)
..+.|+. ++..|..-.-|+.|.+++.-|++|=.++......+-.+-+ ...++.....=++ ++. ..+.....++-.
T Consensus 268 ~~spW~~t~L~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~PRe~G~~yf-s~~~~sp~~~vrr~i~sey~~~AsEPCvky 346 (670)
T 3ju4_A 268 HKSPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYF-PDAFNSPSNYVRRQIPSEYEPDASEPCIKY 346 (670)
T ss_dssp TTSCCEEEECCSCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEE-TTTTTCTTCCEEEECCGGGCTTEEEEEEEE
T ss_pred ccCCceecccccccceeeeeeeeEecCCceEEEeccCCCCcceeeEEEe-cccccCCcceeeeechhhhccccccchhhh
Confidence 4556754 4556666678899999998889886555433223322221 0001111111111 221 223333446667
Q ss_pred ECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEEECCEEEEEcCcC
Q 013909 281 FNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTT 357 (434)
Q Consensus 281 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~ 357 (434)
+++.+|+.--..-.+ ..-..+.+-+ ....|..+. .|........-.+.+++.||+||...
T Consensus 347 YdgvLyLtTRgt~~~----------------~~GS~L~rs~d~Gq~w~slr-fp~nvHhtnlPFakvgD~l~mFgsER 407 (670)
T 3ju4_A 347 YDGVLYLITRGTRGD----------------RLGSSLHRSRDIGQTWESLR-FPHNVHHTTLPFAKVGDDLIMFGSER 407 (670)
T ss_dssp ETTEEEEEEEESCTT----------------SCCCEEEEESSTTSSCEEEE-CTTCCCSSCCCEEEETTEEEEEEECS
T ss_pred hCCEEEEEecCcCCC----------------CCcceeeeecccCCchhhee-ccccccccCCCcceeCCEEEEEeccc
Confidence 899999986322111 0223466666 667898874 12211111222378999999999643
No 179
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=89.20 E-value=2.8 Score=37.54 Aligned_cols=141 Identities=8% Similarity=-0.001 Sum_probs=65.2
Q ss_pred eeeecccccCCceEEecCCCCCccccceeeeEEEccCCcchhhhhccceeeccCCCCcEEEc-CCCCCC--CC-ceeEEE
Q 013909 51 SVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQM-PSAPVP--RL-DGAAIQ 126 (434)
Q Consensus 51 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~W~~~-~~~p~~--R~-~~~~~~ 126 (434)
+.+.+||+.++.+..+..-..........++.+....+.-.-......+..+|+. ++...+ ...... .. -..++.
T Consensus 46 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~ 124 (314)
T 1pjx_A 46 GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAF 124 (314)
T ss_dssp CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEE
T ss_pred CEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEE
Confidence 3688999888887765420000000111222221110110000012257788877 776665 332211 11 122222
Q ss_pred -ECCEEEEEeccC---------CCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-----CC-EEEEEeccCCC
Q 013909 127 -IKNLFYVFAGYG---------SLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-----GR-YIYIVSGQYGP 190 (434)
Q Consensus 127 -~~~~iyv~GG~~---------~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-----~~-~lyv~GG~~~~ 190 (434)
-++++|+..... ........+++||+. .+...+.... .....++.. ++ .||+....
T Consensus 125 d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~----~~~~~i~~~~~~d~dg~~l~v~~~~--- 196 (314)
T 1pjx_A 125 DYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAF----QFPNGIAVRHMNDGRPYQLIVAETP--- 196 (314)
T ss_dssp CTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEE----SSEEEEEEEECTTSCEEEEEEEETT---
T ss_pred CCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCC----CCcceEEEecccCCCCCEEEEEECC---
Confidence 267888865432 111123569999987 5555432111 111233433 33 57776431
Q ss_pred CCCCCCceeEEEECC
Q 013909 191 QCRGPTSRTFVLDSE 205 (434)
Q Consensus 191 ~~~~~~~~~~~yd~~ 205 (434)
...+++||+.
T Consensus 197 -----~~~i~~~~~~ 206 (314)
T 1pjx_A 197 -----TKKLWSYDIK 206 (314)
T ss_dssp -----TTEEEEEEEE
T ss_pred -----CCeEEEEECC
Confidence 2578889875
No 180
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=89.18 E-value=10 Score=34.87 Aligned_cols=99 Identities=7% Similarity=0.093 Sum_probs=49.1
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEec-CCCCCCCCceeeEEEEe---CCEEEEEeccCCCCCCCCCceeEEEE
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDR-FDMPKDMAHSHLGVVSD---GRYIYIVSGQYGPQCRGPTSRTFVLD 203 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~-~~~~~~~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~yd 203 (434)
++..++.|+.+ ..+.++|+.+.+-... ..-.. .-.++.+. ++.+++.|+.+ ..+..||
T Consensus 165 ~~~~l~t~s~D------~~v~lwd~~~~~~~~~~~~h~~----~v~~~~~~~~~~g~~l~sgs~D--------g~v~~wd 226 (354)
T 2pbi_B 165 SDMQILTASGD------GTCALWDVESGQLLQSFHGHGA----DVLCLDLAPSETGNTFVSGGCD--------KKAMVWD 226 (354)
T ss_dssp SSSEEEEEETT------SEEEEEETTTCCEEEEEECCSS----CEEEEEECCCSSCCEEEEEETT--------SCEEEEE
T ss_pred CCCEEEEEeCC------CcEEEEeCCCCeEEEEEcCCCC----CeEEEEEEeCCCCCEEEEEeCC--------CeEEEEE
Confidence 34455555543 2478889988764321 11111 11122221 34677777753 3578899
Q ss_pred CCCCceEecCCCCCCcccceEEEE--CCEEEEEcCCCCCCCCCCcceEEE
Q 013909 204 SETRKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSI 251 (434)
Q Consensus 204 ~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~ 251 (434)
..+.+....-.... .....+.+ ++..++.|+.+ ..+.+|++
T Consensus 227 ~~~~~~~~~~~~h~--~~v~~v~~~p~~~~l~s~s~D-----~~v~lwd~ 269 (354)
T 2pbi_B 227 MRSGQCVQAFETHE--SDVNSVRYYPSGDAFASGSDD-----ATCRLYDL 269 (354)
T ss_dssp TTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETT-----SCEEEEET
T ss_pred CCCCcEEEEecCCC--CCeEEEEEeCCCCEEEEEeCC-----CeEEEEEC
Confidence 88876543211111 11112222 46667777654 34666763
No 181
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=89.09 E-value=14 Score=37.66 Aligned_cols=237 Identities=11% Similarity=0.069 Sum_probs=111.2
Q ss_pred ceeeccCCCCcEEEcCCCCCCCCceeEEEE-CCEEEEEeccCCCC----------CceeeEEEEECCCCceE--ecCCCC
Q 013909 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI-KNLFYVFAGYGSLD----------YVHSHVDVYNFTDNKWV--DRFDMP 164 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~----------~~~~~v~~yd~~t~~W~--~~~~~~ 164 (434)
.++.+|..+++..... ++... ....+.. +++.++++..+... .....++++++.+.+-+ .+...+
T Consensus 152 ~i~v~d~~tg~~~~~~-~~~~~-~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~ 229 (710)
T 2xdw_A 152 TIKFMKVDGAKELPDV-LERVK-FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFP 229 (710)
T ss_dssp EEEEEETTTTEEEEEE-EEEEC-SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCT
T ss_pred EEEEEECCCCCCCccc-ccCcc-cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccC
Confidence 6777788777665431 11111 1122222 55544444433220 12345999999887632 221221
Q ss_pred CCCCceeeEEEE-eCCE-EEEEeccCCCCCCCCCceeEEEECCC------C--ceEecCCCCCCcccceEEEECCEEEEE
Q 013909 165 KDMAHSHLGVVS-DGRY-IYIVSGQYGPQCRGPTSRTFVLDSET------R--KWDSIPPLPSPRYSPATQLWRGRLHVM 234 (434)
Q Consensus 165 ~~~~r~~~~~~~-~~~~-lyv~GG~~~~~~~~~~~~~~~yd~~t------~--~W~~~~~~p~~r~~~~~~~~~~~iyv~ 234 (434)
. .+........ -+++ |++... .... ..++++.+|..+ . .++.+..-..... ......+++||+.
T Consensus 230 ~-~~~~~~~~~~SpDg~~l~~~~~-~~~~---~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~ 303 (710)
T 2xdw_A 230 D-EPKWMGGAELSDDGRYVLLSIR-EGCD---PVNRLWYCDLQQESNGITGILKWVKLIDNFEGEY-DYVTNEGTVFTFK 303 (710)
T ss_dssp T-CTTCEEEEEECTTSCEEEEEEE-CSSS---SCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE-EEEEEETTEEEEE
T ss_pred C-CCeEEEEEEEcCCCCEEEEEEE-ccCC---CccEEEEEECcccccccCCccceEEeeCCCCcEE-EEEeccCCEEEEE
Confidence 1 0122223333 3444 444432 2211 147899999876 3 5776643222221 1233457788888
Q ss_pred cCCCCCCCCCCcceEEEEeecccccc---CceEEccCCCCCCCceeEEEE-CCEEEEEcCCCCCCCCCCCCCcccccccc
Q 013909 235 GGSKENRHTPGLEHWSIAVKDGKALE---KAWRTEIPIPRGGPHRACFVF-NDRLFVVGGQEGDFMAKPGSPIFKCSRRH 310 (434)
Q Consensus 235 GG~~~~~~~~~~~~~~~~~~~~~~~~---~~W~~~~~~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~ 310 (434)
+..+.. ...++..+ ..+ ..|+.+.+......-..+... ++++++....++.
T Consensus 304 s~~~~~----~~~l~~~d-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~---------------- 358 (710)
T 2xdw_A 304 TNRHSP----NYRLINID-----FTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVK---------------- 358 (710)
T ss_dssp ECTTCT----TCEEEEEE-----TTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTE----------------
T ss_pred ECCCCC----CCEEEEEe-----CCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCE----------------
Confidence 654321 12233222 222 258776543221111134445 7788777654432
Q ss_pred ceeeCcEEEeC-CCCC-eEEcCCCCCCCCccceeEEEE-CC-EEEEE-cCcCCCCCCccceeeeccEEEEECCCCc--eE
Q 013909 311 EVVYGDVYMLD-DEMK-WKVLPPMPKPNSHIECAWVIV-NN-SIIIT-GGTTEKHPMTKRMILVGEVFQFHLDSLT--WS 383 (434)
Q Consensus 311 ~~~~~~v~~yd-~~~~-W~~~~~~p~~r~~~~~~~~~~-~~-~i~v~-GG~~~~~~~~~~~~~~~~v~~yd~~~~~--W~ 383 (434)
..++.+| .+.+ .+.+. .+ .... ..+... ++ .+++. .+.... .+++.||+.+++ .+
T Consensus 359 ----~~l~~~~~~~g~~~~~l~-~~--~~~v-~~~~~s~d~~~l~~~~ss~~~P----------~~i~~~d~~tg~~~~~ 420 (710)
T 2xdw_A 359 ----NTLQLHDLATGALLKIFP-LE--VGSV-VGYSGQKKDTEIFYQFTSFLSP----------GIIYHCDLTKEELEPR 420 (710)
T ss_dssp ----EEEEEEETTTCCEEEEEC-CC--SSEE-EEEECCTTCSEEEEEEECSSCC----------CEEEEEETTSSSCCCE
T ss_pred ----EEEEEEECCCCCEEEecC-CC--CceE-EEEecCCCCCEEEEEEeCCCCC----------CEEEEEECCCCccceE
Confidence 2478887 3443 44443 22 1211 111111 33 44333 233222 379999998877 66
Q ss_pred Ee
Q 013909 384 VI 385 (434)
Q Consensus 384 ~~ 385 (434)
.+
T Consensus 421 ~l 422 (710)
T 2xdw_A 421 VF 422 (710)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 182
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=89.03 E-value=9.2 Score=33.85 Aligned_cols=82 Identities=11% Similarity=0.054 Sum_probs=43.1
Q ss_pred eEEEEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceE
Q 013909 146 HVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPAT 224 (434)
Q Consensus 146 ~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~ 224 (434)
.|.++|+.+++-...-.+... ...-.+++.. +++.++.|+.+ ..+..+|.++.+-...-.... .....
T Consensus 46 tV~iWd~~tg~~~~~~~~~~~-~~~V~~v~~~~~~~~l~sgs~D--------g~v~iw~~~~~~~~~~~~~h~--~~~~~ 114 (318)
T 4ggc_A 46 SVYLWSASSGDILQLLQMEQP-GEYISSVAWIKEGNYLAVGTSS--------AEVQLWDVQQQKRLRNMTSHS--ARVGS 114 (318)
T ss_dssp EEEEEETTTCCEEEEEECCST-TCCEEEEEECTTSSEEEEEETT--------SEEEEEETTTTEEEEEEECCS--SCEEE
T ss_pred EEEEEECCCCCEEEEEEecCC-CCeEEEEEECCCCCEEEEEECC--------CcEEEeecCCceeEEEecCcc--ceEEE
Confidence 488899999876554333221 1222333333 56677777743 357788988876433211111 11223
Q ss_pred EEECCEEEEEcCCC
Q 013909 225 QLWRGRLHVMGGSK 238 (434)
Q Consensus 225 ~~~~~~iyv~GG~~ 238 (434)
...++++.+.|+..
T Consensus 115 ~~~~~~~l~s~~~~ 128 (318)
T 4ggc_A 115 LSWNSYILSSGSRS 128 (318)
T ss_dssp EEEETTEEEEEETT
T ss_pred eecCCCEEEEEecC
Confidence 34455566665543
No 183
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=88.84 E-value=9.6 Score=34.01 Aligned_cols=168 Identities=10% Similarity=0.103 Sum_probs=81.4
Q ss_pred cceeeccCCCCcEEEcCCCCCC--CC--ceeEEEECCEEEEEeccCC-----CCCceeeEEEEECCCCceEecC-CCCCC
Q 013909 97 ATFADLPAPDLEWEQMPSAPVP--RL--DGAAIQIKNLFYVFAGYGS-----LDYVHSHVDVYNFTDNKWVDRF-DMPKD 166 (434)
Q Consensus 97 ~~~~~~~~~~~~W~~~~~~p~~--R~--~~~~~~~~~~iyv~GG~~~-----~~~~~~~v~~yd~~t~~W~~~~-~~~~~ 166 (434)
..+..+|+.+++++.+...+.. .. ...++.-++++|+..-... .......++++|+.. +...+. .+.
T Consensus 73 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~~-- 149 (297)
T 3g4e_A 73 TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQVD-- 149 (297)
T ss_dssp TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEES--
T ss_pred CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeeccc--
Confidence 4788899988888776554322 11 1122222677777431111 011234689998863 333321 111
Q ss_pred CCceeeEEEEe--CCEEEEEeccCCCCCCCCCceeEEEEC--CCCceEe---cCCCCCCcccc-eEEE-ECCEEEEEcCC
Q 013909 167 MAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDS--ETRKWDS---IPPLPSPRYSP-ATQL-WRGRLHVMGGS 237 (434)
Q Consensus 167 ~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~--~t~~W~~---~~~~p~~r~~~-~~~~-~~~~iyv~GG~ 237 (434)
...+++.. ++.||+.... ...+++||. .+.+... ...++...... .++. -+++|||....
T Consensus 150 ---~pngi~~spdg~~lyv~~~~--------~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~ 218 (297)
T 3g4e_A 150 ---ISNGLDWSLDHKIFYYIDSL--------SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN 218 (297)
T ss_dssp ---BEEEEEECTTSCEEEEEEGG--------GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET
T ss_pred ---cccceEEcCCCCEEEEecCC--------CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC
Confidence 12344443 4568887532 356788875 5554321 11222111111 2222 36788887422
Q ss_pred CCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEEC----CEEEEEcCCC
Q 013909 238 KENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFN----DRLFVVGGQE 292 (434)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~----~~iyv~GG~~ 292 (434)
. ..+.+|+ +.+.+.....++|... ..++.++ +.|||.....
T Consensus 219 ~-----~~v~~~d-------~~tG~~~~~i~~p~~~--~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 219 G-----GRVIRLD-------PVTGKRLQTVKLPVDK--TTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp T-----TEEEEEC-------TTTCCEEEEEECSSSB--EEEEEEESGGGCEEEEEEBCT
T ss_pred C-----CEEEEEc-------CCCceEEEEEECCCCC--ceEEEEeCCCCCEEEEEcCCc
Confidence 1 1233443 6555554444455332 2444443 4788887644
No 184
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=88.56 E-value=23 Score=36.07 Aligned_cols=214 Identities=10% Similarity=0.059 Sum_probs=99.8
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCC--------CCCCCce
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQ--------CRGPTSR 198 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~--------~~~~~~~ 198 (434)
+++.++++...+... ...++++|+.+++...... .. .. ...++.. +++.++++..+... .......
T Consensus 135 Dg~~la~~~~~~G~~-~~~i~v~d~~tg~~~~~~~-~~--~~-~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 209 (710)
T 2xdw_A 135 DGEYFAYGLSASGSD-WVTIKFMKVDGAKELPDVL-ER--VK-FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQK 209 (710)
T ss_dssp TSSEEEEEEEETTCS-CEEEEEEETTTTEEEEEEE-EE--EC-SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCE
T ss_pred CCCEEEEEEcCCCCc-eEEEEEEECCCCCCCcccc-cC--cc-cceEEEEeCCCEEEEEEECCccccccccccccCCCCE
Confidence 666555554322221 2359999999998765321 11 11 1223333 44433344333220 0011356
Q ss_pred eEEEECCCCceE--ecCCCC-CCcccceEE-EECCEEEEEcCCCCCCCCCCcceEEEEeecccccc------C--ceEEc
Q 013909 199 TFVLDSETRKWD--SIPPLP-SPRYSPATQ-LWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALE------K--AWRTE 266 (434)
Q Consensus 199 ~~~yd~~t~~W~--~~~~~p-~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~------~--~W~~~ 266 (434)
+++++..+.+.+ .+...+ .+....... .-+++..++........ ..++|-.+ ..+ . .++.+
T Consensus 210 v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~--~~~l~~~d-----~~~~~~~~~~~~~~~~l 282 (710)
T 2xdw_A 210 LYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDP--VNRLWYCD-----LQQESNGITGILKWVKL 282 (710)
T ss_dssp EEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSS--CCEEEEEE-----GGGSSSSSCSSCCCEEE
T ss_pred EEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCC--ccEEEEEE-----CcccccccCCccceEEe
Confidence 899999887632 221222 122222222 23454444433221111 22333332 222 2 46665
Q ss_pred cCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCC---CeEEcCCCCCCCCcccee
Q 013909 267 IPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEM---KWKVLPPMPKPNSHIECA 342 (434)
Q Consensus 267 ~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~---~W~~~~~~p~~r~~~~~~ 342 (434)
.+-..... .....-++.||+.+..+.. ...++.+| .+. .|+.+.+.. +..... .
T Consensus 283 ~~~~~~~~-~~~s~dg~~l~~~s~~~~~-------------------~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~-~ 340 (710)
T 2xdw_A 283 IDNFEGEY-DYVTNEGTVFTFKTNRHSP-------------------NYRLINIDFTDPEESKWKVLVPEH-EKDVLE-W 340 (710)
T ss_dssp ECSSSSCE-EEEEEETTEEEEEECTTCT-------------------TCEEEEEETTSCCGGGCEEEECCC-SSCEEE-E
T ss_pred eCCCCcEE-EEEeccCCEEEEEECCCCC-------------------CCEEEEEeCCCCCcccceeccCCC-CCCeEE-E
Confidence 44322221 1233347788888754322 23588887 433 588774321 111111 2
Q ss_pred EEEE-CCEEEEEcCcCCCCCCccceeeeccEEEEECCCCc-eEEe
Q 013909 343 WVIV-NNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLT-WSVI 385 (434)
Q Consensus 343 ~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~-W~~~ 385 (434)
+... ++++++....++ ...++++|+.+++ ...+
T Consensus 341 ~~~~~~~~lv~~~~~~g----------~~~l~~~~~~~g~~~~~l 375 (710)
T 2xdw_A 341 VACVRSNFLVLCYLHDV----------KNTLQLHDLATGALLKIF 375 (710)
T ss_dssp EEEETTTEEEEEEEETT----------EEEEEEEETTTCCEEEEE
T ss_pred EEEEcCCEEEEEEEECC----------EEEEEEEECCCCCEEEec
Confidence 3445 778877765443 2368999986554 3444
No 185
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=88.39 E-value=6.1 Score=39.24 Aligned_cols=199 Identities=10% Similarity=0.036 Sum_probs=95.3
Q ss_pred EEECCEEEEEecc-CCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEE
Q 013909 125 IQIKNLFYVFAGY-GSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLD 203 (434)
Q Consensus 125 ~~~~~~iyv~GG~-~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd 203 (434)
...+++.+++++. ++ .+.+|++.+++-.++...+. ..-.+.+...+++.+.+...+.. ....+|..+
T Consensus 29 ~~~DG~~la~~s~~~g------~~~lw~~~~g~~~~lt~~~~---~~~~~~~~spd~~l~~~~~~~g~---~~~~l~~~~ 96 (582)
T 3o4h_A 29 GVVDGDKLLVVGFSEG------SVNAYLYDGGETVKLNREPI---NSVLDPHYGVGRVILVRDVSKGA---EQHALFKVN 96 (582)
T ss_dssp EEETTTEEEEEEEETT------EEEEEEEETTEEEECCSSCC---SEECEECTTCSEEEEEEECSTTS---CCEEEEEEE
T ss_pred cCCCCCeEEEEEccCC------ceeEEEEcCCCcEeeecccc---cccccccCCCCeEEEEeccCCCC---cceEEEEEe
Confidence 3457766666654 32 13444455665555543321 11222222233555444321111 135677888
Q ss_pred C--CCCceEecCCCCCCcccceEEEEC-CEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEE
Q 013909 204 S--ETRKWDSIPPLPSPRYSPATQLWR-GRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFV 280 (434)
Q Consensus 204 ~--~t~~W~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~ 280 (434)
+ .... ..+...+..+ ..+...+ +.++++.+..+ ...+|+++ +.+-+.+...+. . ..+..
T Consensus 97 ~~~~g~~-~~l~~~~~~~--~~~~s~dg~~~~~~s~~~~-----~~~l~d~~-------~g~~~~l~~~~~--~-~~~~s 158 (582)
T 3o4h_A 97 TSRPGEE-QRLEAVKPMR--ILSGVDTGEAVVFTGATED-----RVALYALD-------GGGLRELARLPG--F-GFVSD 158 (582)
T ss_dssp TTSTTCC-EECTTSCSBE--EEEEEECSSCEEEEEECSS-----CEEEEEEE-------TTEEEEEEEESS--C-EEEEE
T ss_pred ccCCCcc-ccccCCCCce--eeeeCCCCCeEEEEecCCC-----CceEEEcc-------CCcEEEeecCCC--c-eEEEC
Confidence 7 4433 2443333222 2233334 45555544332 22367643 444444433333 2 13334
Q ss_pred ECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCC
Q 013909 281 FNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEK 359 (434)
Q Consensus 281 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~ 359 (434)
-+|+.+++++..... ..+++.+| .+.+++.+...+... ..-+...+|+.++.+..++
T Consensus 159 pDG~~la~~~~~~~~------------------~~~i~~~d~~~g~~~~l~~~~~~~---~~~~~SpDG~~l~~~~~~~- 216 (582)
T 3o4h_A 159 IRGDLIAGLGFFGGG------------------RVSLFTSNLSSGGLRVFDSGEGSF---SSASISPGMKVTAGLETAR- 216 (582)
T ss_dssp EETTEEEEEEEEETT------------------EEEEEEEETTTCCCEEECCSSCEE---EEEEECTTSCEEEEEECSS-
T ss_pred CCCCEEEEEEEcCCC------------------CeEEEEEcCCCCCceEeecCCCcc---ccceECCCCCEEEEccCCC-
Confidence 577777766543221 13499999 777777765332211 1111334666555333221
Q ss_pred CCCccceeeeccEEEEECCCCceEE
Q 013909 360 HPMTKRMILVGEVFQFHLDSLTWSV 384 (434)
Q Consensus 360 ~~~~~~~~~~~~v~~yd~~~~~W~~ 384 (434)
...++++|+++++.+.
T Consensus 217 ---------~~~i~~~d~~~~~~~~ 232 (582)
T 3o4h_A 217 ---------EARLVTVDPRDGSVED 232 (582)
T ss_dssp ---------CEEEEEECTTTCCEEE
T ss_pred ---------eeEEEEEcCCCCcEEE
Confidence 1369999999988873
No 186
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=88.30 E-value=12 Score=33.50 Aligned_cols=81 Identities=16% Similarity=0.186 Sum_probs=40.8
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCC-ceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECC-
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDN-KWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSE- 205 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~-~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~- 205 (434)
++.||+.. .+ +++||+..+ .|+.. .+.+ .. ...++.++.||+... ...+++||+.
T Consensus 70 ~g~l~v~t--------~~-l~~~d~~g~~~~~~~--~~~~-~~--~~~~~~~~~l~v~t~---------~~~l~~~d~~g 126 (330)
T 3hxj_A 70 DGTIYFGS--------DK-VYAINPDGTEKWRFD--TKKA-IV--SDFTIFEDILYVTSM---------DGHLYAINTDG 126 (330)
T ss_dssp TTEECCSS--------CE-EEEECCCGGGGGGSC--C--------CCEEEETTEEEEECT---------TSEEEEECTTS
T ss_pred CCcEEEec--------Cc-EEEECCCCcEEEEEE--CCCC-cc--cCceEECCEEEEEec---------CCEEEEEcCCC
Confidence 66777621 12 889997433 35432 1111 11 122334888887432 2468889987
Q ss_pred CCceEecCCCCCCcccceEEEE-CCEEEEE
Q 013909 206 TRKWDSIPPLPSPRYSPATQLW-RGRLHVM 234 (434)
Q Consensus 206 t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~ 234 (434)
...|+...+.+. ..+.+.. ++.||+.
T Consensus 127 ~~~~~~~~~~~~---~~~~~~~~~g~l~vg 153 (330)
T 3hxj_A 127 TEKWRFKTKKAI---YATPIVSEDGTIYVG 153 (330)
T ss_dssp CEEEEEECSSCC---CSCCEECTTSCEEEE
T ss_pred CEEEEEcCCCce---eeeeEEcCCCEEEEE
Confidence 335765432221 1222333 6777774
No 187
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=88.25 E-value=13 Score=32.89 Aligned_cols=200 Identities=9% Similarity=0.018 Sum_probs=95.5
Q ss_pred ceeeccCCCC--cEEEcCCCCCCCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCc--eEecCCCCCCCCceeeE
Q 013909 98 TFADLPAPDL--EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSHLG 173 (434)
Q Consensus 98 ~~~~~~~~~~--~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~r~~~~ 173 (434)
.+..+|++++ .|+.-..-. ...+...+..++.+++.+ .+.+..||+ +.+ |+.-.+ . ....++
T Consensus 16 ~v~~~d~~tG~~~w~~~~~~~-~~~~~~~~~pdG~ilvs~--------~~~V~~~d~-~G~~~W~~~~~--~--~~~~~~ 81 (276)
T 3no2_A 16 KIAIINKDTKEIVWEYPLEKG-WECNSVAATKAGEILFSY--------SKGAKMITR-DGRELWNIAAP--A--GCEMQT 81 (276)
T ss_dssp EEEEEETTTTEEEEEEECCTT-CCCCEEEECTTSCEEEEC--------BSEEEEECT-TSCEEEEEECC--T--TCEEEE
T ss_pred EEEEEECCCCeEEEEeCCCcc-CCCcCeEECCCCCEEEeC--------CCCEEEECC-CCCEEEEEcCC--C--Cccccc
Confidence 5666676565 465432211 122333344477888832 134899999 443 764332 1 112233
Q ss_pred EE-EeCCEEEEEeccCCCCCCCCCceeEEEECCCCc-eEec--CCCCCC--cccceEEEECCEEEEEcCCCCCCCCCCcc
Q 013909 174 VV-SDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK-WDSI--PPLPSP--RYSPATQLWRGRLHVMGGSKENRHTPGLE 247 (434)
Q Consensus 174 ~~-~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~-W~~~--~~~p~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 247 (434)
+. ..++++++....+ ...++.+|+.-.. |+.. ...+.+ .........++.+++....+ ..+.
T Consensus 82 ~~~~~dG~~lv~~~~~-------~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~-----~~v~ 149 (276)
T 3no2_A 82 ARILPDGNALVAWCGH-------PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFAT-----SEVR 149 (276)
T ss_dssp EEECTTSCEEEEEEST-------TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTT-----TEEE
T ss_pred cEECCCCCEEEEecCC-------CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCC-----CEEE
Confidence 33 3466666654310 2467788875432 4332 111111 12223334466666654321 2233
Q ss_pred eEEEEeeccccccCceEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCC--
Q 013909 248 HWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEM-- 324 (434)
Q Consensus 248 ~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~-- 324 (434)
+|+ .+ ....|+.-.+. ..+ ......++.+++.+..++ .++.+| .+.
T Consensus 150 ~~d-----~~-G~~~w~~~~~~--~~~-~~~~~~~g~~~v~~~~~~----------------------~v~~~d~~tG~~ 198 (276)
T 3no2_A 150 EIA-----PN-GQLLNSVKLSG--TPF-SSAFLDNGDCLVACGDAH----------------------CFVQLNLESNRI 198 (276)
T ss_dssp EEC-----TT-SCEEEEEECSS--CCC-EEEECTTSCEEEECBTTS----------------------EEEEECTTTCCE
T ss_pred EEC-----CC-CCEEEEEECCC--Ccc-ceeEcCCCCEEEEeCCCC----------------------eEEEEeCcCCcE
Confidence 333 11 33456654321 111 133334788888776532 389999 423
Q ss_pred CeEEcC-CCCCCCC-ccceeEEEECCEEEEEc
Q 013909 325 KWKVLP-PMPKPNS-HIECAWVIVNNSIIITG 354 (434)
Q Consensus 325 ~W~~~~-~~p~~r~-~~~~~~~~~~~~i~v~G 354 (434)
.|+.-. .++..+. .........++.+||..
T Consensus 199 ~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 199 VRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp EEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred EEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 677642 2222222 22223344588888876
No 188
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=88.21 E-value=14 Score=33.11 Aligned_cols=95 Identities=6% Similarity=-0.041 Sum_probs=53.3
Q ss_pred ccceeeccCCCCcEEEcCCCCCCCCceeEEEE-CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEE
Q 013909 96 SATFADLPAPDLEWEQMPSAPVPRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGV 174 (434)
Q Consensus 96 ~~~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~ 174 (434)
+..++.+|+... .......+ ..-+.++.. ++++||....... ..+++||+.+.+.+.+...+. .+.....
T Consensus 52 ~~~I~~~d~~g~-~~~~~~~~--~~p~gia~~~dG~l~vad~~~~~----~~v~~~d~~~g~~~~~~~~~~--~~~~~g~ 122 (306)
T 2p4o_A 52 VGEIVSITPDGN-QQIHATVE--GKVSGLAFTSNGDLVATGWNADS----IPVVSLVKSDGTVETLLTLPD--AIFLNGI 122 (306)
T ss_dssp TTEEEEECTTCC-EEEEEECS--SEEEEEEECTTSCEEEEEECTTS----CEEEEEECTTSCEEEEEECTT--CSCEEEE
T ss_pred CCeEEEECCCCc-eEEEEeCC--CCceeEEEcCCCcEEEEeccCCc----ceEEEEcCCCCeEEEEEeCCC--ccccCcc
Confidence 346788887653 22222222 122333333 5678887532211 138889999988876655543 3444444
Q ss_pred EE-eCCEEEEEeccCCCCCCCCCceeEEEECCCC
Q 013909 175 VS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (434)
Q Consensus 175 ~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~ 207 (434)
+. .++.+|+.-- ....++++|+.+.
T Consensus 123 ~~~~~~~~~v~d~--------~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 123 TPLSDTQYLTADS--------YRGAIWLIDVVQP 148 (306)
T ss_dssp EESSSSEEEEEET--------TTTEEEEEETTTT
T ss_pred cccCCCcEEEEEC--------CCCeEEEEeCCCC
Confidence 43 3567787531 1357999998764
No 189
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=88.19 E-value=5.4 Score=40.70 Aligned_cols=103 Identities=14% Similarity=-0.010 Sum_probs=48.1
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeC-C--EEEEEeccCCCCCCCCCceeEEEEC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDG-R--YIYIVSGQYGPQCRGPTSRTFVLDS 204 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~-~--~lyv~GG~~~~~~~~~~~~~~~yd~ 204 (434)
++..++.|+.++ .+.++|.....=..+..........-.+++... + .+++.|+.+ ..+.+||.
T Consensus 483 ~~~~l~s~s~D~------~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d--------~~v~vwd~ 548 (694)
T 3dm0_A 483 DNRQIVSASRDR------TIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWD--------KTVKVWNL 548 (694)
T ss_dssp TSSCEEEEETTS------CEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETT--------SCEEEEET
T ss_pred CCCEEEEEeCCC------EEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCC--------CeEEEEEC
Confidence 566677776553 367777765432222211111011122333332 2 355666543 35778898
Q ss_pred CCCceEecCCCCCCcccceEEE--ECCEEEEEcCCCCCCCCCCcceEEE
Q 013909 205 ETRKWDSIPPLPSPRYSPATQL--WRGRLHVMGGSKENRHTPGLEHWSI 251 (434)
Q Consensus 205 ~t~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~ 251 (434)
.+.+-...- .........+. -++++++.|+.++ .+.+|++
T Consensus 549 ~~~~~~~~~--~~h~~~v~~v~~spdg~~l~sg~~Dg-----~i~iwd~ 590 (694)
T 3dm0_A 549 SNCKLRSTL--AGHTGYVSTVAVSPDGSLCASGGKDG-----VVLLWDL 590 (694)
T ss_dssp TTCCEEEEE--CCCSSCEEEEEECTTSSEEEEEETTS-----BCEEEET
T ss_pred CCCcEEEEE--cCCCCCEEEEEEeCCCCEEEEEeCCC-----eEEEEEC
Confidence 776543221 11111111222 2567777777543 4667763
No 190
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=88.11 E-value=7.3 Score=35.20 Aligned_cols=27 Identities=15% Similarity=0.351 Sum_probs=18.3
Q ss_pred ECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEE
Q 013909 346 VNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSV 384 (434)
Q Consensus 346 ~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 384 (434)
.++.+++.|+.+ ..+.+||+.+.+-..
T Consensus 178 ~~~~~l~~~~~d------------~~i~i~d~~~~~~~~ 204 (357)
T 3i2n_A 178 QEERVVCAGYDN------------GDIKLFDLRNMALRW 204 (357)
T ss_dssp -CCCEEEEEETT------------SEEEEEETTTTEEEE
T ss_pred CCCCEEEEEccC------------CeEEEEECccCceee
Confidence 467777777654 268899988876433
No 191
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=87.88 E-value=11 Score=34.07 Aligned_cols=100 Identities=11% Similarity=0.082 Sum_probs=50.5
Q ss_pred CEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCCC
Q 013909 129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (434)
Q Consensus 129 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~ 207 (434)
+.+++.|+.++ .+.+||..+........+... ...-.+++.. ++..++.|+.+ ..+.+||..+.
T Consensus 54 g~~l~~~~~dg------~i~iw~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~d--------g~v~iwd~~~~ 118 (368)
T 3mmy_A 54 GNFLIAGSWAN------DVRCWEVQDSGQTIPKAQQMH-TGPVLDVCWSDDGSKVFTASCD--------KTAKMWDLSSN 118 (368)
T ss_dssp SEEEEEEETTS------EEEEEEECTTSCEEEEEEEEC-SSCEEEEEECTTSSEEEEEETT--------SEEEEEETTTT
T ss_pred ceEEEEECCCC------cEEEEEcCCCCceeEEEeccc-cCCEEEEEECcCCCEEEEEcCC--------CcEEEEEcCCC
Confidence 47888887653 377888876332221111110 1112233333 55566666632 46888999888
Q ss_pred ceEecCCCCCCcccceEEE---ECCEEEEEcCCCCCCCCCCcceEE
Q 013909 208 KWDSIPPLPSPRYSPATQL---WRGRLHVMGGSKENRHTPGLEHWS 250 (434)
Q Consensus 208 ~W~~~~~~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~~ 250 (434)
+......-..+ -.+++. -++++++.|+.++ .+.+|+
T Consensus 119 ~~~~~~~~~~~--v~~~~~~~~~~~~~l~~~~~dg-----~i~vwd 157 (368)
T 3mmy_A 119 QAIQIAQHDAP--VKTIHWIKAPNYSCVMTGSWDK-----TLKFWD 157 (368)
T ss_dssp EEEEEEECSSC--EEEEEEEECSSCEEEEEEETTS-----EEEEEC
T ss_pred CceeeccccCc--eEEEEEEeCCCCCEEEEccCCC-----cEEEEE
Confidence 76554221111 112222 2567777776543 345555
No 192
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=87.66 E-value=14 Score=32.40 Aligned_cols=124 Identities=9% Similarity=-0.017 Sum_probs=61.1
Q ss_pred cceeeccCCCCcEEEcCCCC---CC-CCceeEEEE--CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCce
Q 013909 97 ATFADLPAPDLEWEQMPSAP---VP-RLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHS 170 (434)
Q Consensus 97 ~~~~~~~~~~~~W~~~~~~p---~~-R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~ 170 (434)
..+..||+....-..+.... .. ..-..++.. ++.+|+.+... ...+.+||+....-..+..... ..
T Consensus 51 ~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~-----~~~i~~~d~~g~~~~~~~~~~~---~~ 122 (286)
T 1q7f_A 51 HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP-----THQIQIYNQYGQFVRKFGATIL---QH 122 (286)
T ss_dssp TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG-----GCEEEEECTTSCEEEEECTTTC---SC
T ss_pred CEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC-----CCEEEEECCCCcEEEEecCccC---CC
Confidence 35677776644333333211 11 112334442 67899886321 2348899965554443322111 22
Q ss_pred eeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEE-EECCEEEEEcC
Q 013909 171 HLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQ-LWRGRLHVMGG 236 (434)
Q Consensus 171 ~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG 236 (434)
-.++++. ++++|+.... ...+.+||+.......+........-..++ .-++++|+...
T Consensus 123 ~~~i~~~~~g~l~v~~~~--------~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~ 182 (286)
T 1q7f_A 123 PRGVTVDNKGRIIVVECK--------VMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN 182 (286)
T ss_dssp EEEEEECTTSCEEEEETT--------TTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred ceEEEEeCCCCEEEEECC--------CCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEEC
Confidence 2345543 6788887532 257889998765444432111111111222 22578988754
No 193
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=87.65 E-value=8.1 Score=35.60 Aligned_cols=127 Identities=16% Similarity=0.067 Sum_probs=63.9
Q ss_pred ceeeccCCCCcEEEcCCCCCCCCceeEEEE--CCE-EEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEE
Q 013909 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI--KNL-FYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGV 174 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~--~~~-iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~ 174 (434)
.++.+|..+++...+.. ........... +++ |+.... .........++.+|..+.++..+.. ..+ .......
T Consensus 169 ~l~~~d~~~g~~~~~~~--~~~~~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~-~~~-~~~~~~~ 243 (396)
T 3c5m_A 169 RLIKVDIETGELEVIHQ--DTAWLGHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSNVRKIKE-HAE-GESCTHE 243 (396)
T ss_dssp EEEEEETTTCCEEEEEE--ESSCEEEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCCCEESSC-CCT-TEEEEEE
T ss_pred eEEEEECCCCcEEeecc--CCcccccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCceeEeec-cCC-Cccccce
Confidence 67777887777665542 12222222222 344 444432 2221112459999999888877655 211 1122223
Q ss_pred EEe-CCE-EEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEE-CCEEEEEcC
Q 013909 175 VSD-GRY-IYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW-RGRLHVMGG 236 (434)
Q Consensus 175 ~~~-~~~-lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG 236 (434)
+.. +++ |++.. ..... ....++++|+.+.+.+.+...+. .. ....- +++++++.+
T Consensus 244 ~~spdg~~l~~~~-~~~~~---~~~~l~~~d~~~g~~~~l~~~~~--~~-~~~s~~dg~~l~~~~ 301 (396)
T 3c5m_A 244 FWIPDGSAMAYVS-YFKGQ---TDRVIYKANPETLENEEVMVMPP--CS-HLMSNFDGSLMVGDG 301 (396)
T ss_dssp EECTTSSCEEEEE-EETTT---CCEEEEEECTTTCCEEEEEECCS--EE-EEEECSSSSEEEEEE
T ss_pred EECCCCCEEEEEe-cCCCC---ccceEEEEECCCCCeEEeeeCCC--CC-CCccCCCCceEEEec
Confidence 332 444 44443 22111 12459999999888776654442 11 22233 677666644
No 194
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=87.56 E-value=19 Score=33.78 Aligned_cols=192 Identities=10% Similarity=0.099 Sum_probs=100.7
Q ss_pred eEEEEECCCCceEecCCCCCCCCceeeEEEEe--CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecC--CCCCCccc
Q 013909 146 HVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP--PLPSPRYS 221 (434)
Q Consensus 146 ~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~--~~p~~r~~ 221 (434)
.+.++++.....+.+.+.. ....+++.. ++.||+.-- ....++++++.....+.+. .+..|
T Consensus 97 ~I~~i~~~~~~~~~~~~~~----~~~~gl~~d~~~~~ly~~D~--------~~~~I~r~~~~g~~~~~~~~~~~~~p--- 161 (386)
T 3v65_B 97 DIRQVLPHRSEYTLLLNNL----ENAIALDFHHRRELVFWSDV--------TLDRILRANLNGSNVEEVVSTGLESP--- 161 (386)
T ss_dssp CEEEECTTSCCCEEEECSC----SCEEEEEEETTTTEEEEEET--------TTTEEEEEETTSCCEEEEECSSCSCC---
T ss_pred cceeeccCCCcEEEEecCC----CccEEEEEecCCCeEEEEeC--------CCCcEEEEecCCCCcEEEEeCCCCCc---
Confidence 4888898887766553321 223455544 689998732 1367999999887665542 22222
Q ss_pred ceEEE--ECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEcc--CCCCCCCceeEEEE--CCEEEEEcCCCCCC
Q 013909 222 PATQL--WRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEI--PIPRGGPHRACFVF--NDRLFVVGGQEGDF 295 (434)
Q Consensus 222 ~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~p~~~~~~~~~~~--~~~iyv~GG~~~~~ 295 (434)
..+++ .+++||+.-... ..+.+++ +....-+.+. .+..+ ..+++. ++.||+.--..
T Consensus 162 ~glavd~~~g~lY~~d~~~-----~~I~~~~-------~dg~~~~~l~~~~l~~P---~giavdp~~g~ly~td~~~--- 223 (386)
T 3v65_B 162 GGLAVDWVHDKLYWTDSGT-----SRIEVAN-------LDGAHRKVLLWQSLEKP---RAIALHPMEGTIYWTDWGN--- 223 (386)
T ss_dssp CCEEEETTTTEEEEEETTT-----TEEEECB-------TTSCSCEEEECSSCSCE---EEEEEETTTTEEEEEECSS---
T ss_pred cEEEEEeCCCeEEEEcCCC-----CeEEEEe-------CCCCceEEeecCCCCCC---cEEEEEcCCCeEEEeccCC---
Confidence 12333 478999884322 1122221 2122111211 11111 134443 78899875322
Q ss_pred CCCCCCCccccccccceeeCcEEEeC-CCCCeEEc-C-CCCCCCCccceeEEE--ECCEEEEEcCcCCCCCCccceeeec
Q 013909 296 MAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVL-P-PMPKPNSHIECAWVI--VNNSIIITGGTTEKHPMTKRMILVG 370 (434)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~-~-~~p~~r~~~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~ 370 (434)
...|++++ ....-+.+ . .+..|. ++++ .+++||+.-... +
T Consensus 224 ------------------~~~I~r~~~dG~~~~~~~~~~~~~Pn-----Glavd~~~~~lY~aD~~~------------~ 268 (386)
T 3v65_B 224 ------------------TPRIEASSMDGSGRRIIADTHLFWPN-----GLTIDYAGRRMYWVDAKH------------H 268 (386)
T ss_dssp ------------------SCEEEEEETTSCSCEEEECSSCSCEE-----EEEEEGGGTEEEEEETTT------------T
T ss_pred ------------------CCEEEEEeCCCCCcEEEEECCCCCee-----eEEEeCCCCEEEEEECCC------------C
Confidence 12488888 43332232 2 222221 2244 478999985422 3
Q ss_pred cEEEEECCCCceEEecc--CCCceeeeeeEEECCEEEEEc
Q 013909 371 EVFQFHLDSLTWSVIGK--LPYRIKTTLTGFWDGWLYFTS 408 (434)
Q Consensus 371 ~v~~yd~~~~~W~~~~~--lp~~r~~~~~~~~~~~l~v~G 408 (434)
.|+++|++...=+.+.. ++. -.++++.++.||+.-
T Consensus 269 ~I~~~d~dG~~~~~~~~~~~~~---P~giav~~~~ly~td 305 (386)
T 3v65_B 269 VIERANLDGSHRKAVISQGLPH---PFAITVFEDSLYWTD 305 (386)
T ss_dssp EEEEECTTSCSCEEEECSSCSS---EEEEEEETTEEEEEE
T ss_pred EEEEEeCCCCeeEEEEECCCCC---ceEEEEECCEEEEee
Confidence 78999987654333322 222 245555788888874
No 195
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=87.46 E-value=7.2 Score=35.20 Aligned_cols=98 Identities=9% Similarity=0.039 Sum_probs=46.3
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-------CCEEEEEeccCCCCCCCCCceeE
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-------GRYIYIVSGQYGPQCRGPTSRTF 200 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-------~~~lyv~GG~~~~~~~~~~~~~~ 200 (434)
++.+++.|+.++ .+.+||.....-..+..... .-.++... ++.+++.|+.+ ..+.
T Consensus 118 ~~~~l~s~s~D~------~i~vwd~~~~~~~~~~~h~~----~v~~~~~~~~~~~~~~~~~l~s~~~d--------~~i~ 179 (319)
T 3frx_A 118 KASMIISGSRDK------TIKVWTIKGQCLATLLGHND----WVSQVRVVPNEKADDDSVTIISAGND--------KMVK 179 (319)
T ss_dssp TSCEEEEEETTS------CEEEEETTSCEEEEECCCSS----CEEEEEECCC------CCEEEEEETT--------SCEE
T ss_pred CCCEEEEEeCCC------eEEEEECCCCeEEEEeccCC----cEEEEEEccCCCCCCCccEEEEEeCC--------CEEE
Confidence 566777777653 36777877654333322111 11122222 23355556543 3577
Q ss_pred EEECCCCceEecCCCCCCcccc-eEE-EECCEEEEEcCCCCCCCCCCcceEE
Q 013909 201 VLDSETRKWDSIPPLPSPRYSP-ATQ-LWRGRLHVMGGSKENRHTPGLEHWS 250 (434)
Q Consensus 201 ~yd~~t~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~~~ 250 (434)
.||..+.+-... +....... +++ .-++++++.|+.++ .+.+|+
T Consensus 180 ~wd~~~~~~~~~--~~~h~~~v~~~~~sp~g~~l~s~~~dg-----~i~iwd 224 (319)
T 3frx_A 180 AWNLNQFQIEAD--FIGHNSNINTLTASPDGTLIASAGKDG-----EIMLWN 224 (319)
T ss_dssp EEETTTTEEEEE--ECCCCSCEEEEEECTTSSEEEEEETTC-----EEEEEE
T ss_pred EEECCcchhhee--ecCCCCcEEEEEEcCCCCEEEEEeCCC-----eEEEEE
Confidence 788876543221 11111111 112 22566777776543 456666
No 196
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=87.45 E-value=17 Score=33.32 Aligned_cols=63 Identities=11% Similarity=0.114 Sum_probs=33.4
Q ss_pred EEEEEeccCCCCCceeeEEEEECCCCc------eEecCCCCCCC-CceeeEEEEe-----CCEE-EEEeccCCCCCCCCC
Q 013909 130 LFYVFAGYGSLDYVHSHVDVYNFTDNK------WVDRFDMPKDM-AHSHLGVVSD-----GRYI-YIVSGQYGPQCRGPT 196 (434)
Q Consensus 130 ~iyv~GG~~~~~~~~~~v~~yd~~t~~------W~~~~~~~~~~-~r~~~~~~~~-----~~~l-yv~GG~~~~~~~~~~ 196 (434)
.+++.|+.++ .+.+||..+.+ +..+...+... ...-.+++.. ++.. ++.|+.+
T Consensus 82 ~~l~s~~~dg------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-------- 147 (397)
T 1sq9_A 82 CLVATTSFSG------DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK-------- 147 (397)
T ss_dssp EEEEEEETTS------CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT--------
T ss_pred cEEEEEcCCC------CEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC--------
Confidence 7888877653 37778877766 66665443100 0112233333 4455 6677643
Q ss_pred ceeEEEECCC
Q 013909 197 SRTFVLDSET 206 (434)
Q Consensus 197 ~~~~~yd~~t 206 (434)
..+..||..+
T Consensus 148 g~i~iwd~~~ 157 (397)
T 1sq9_A 148 GTTYIWKFHP 157 (397)
T ss_dssp SCEEEEEEES
T ss_pred CcEEEEeCCc
Confidence 3466677655
No 197
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=86.56 E-value=20 Score=33.24 Aligned_cols=25 Identities=16% Similarity=0.048 Sum_probs=16.9
Q ss_pred CCEEEEEeccCCCCCCCCCceeEEEECCCCceE
Q 013909 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWD 210 (434)
Q Consensus 178 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~ 210 (434)
++++++.|+.+ ..+.+||..+.+-.
T Consensus 134 dg~~l~s~~~d--------~~i~iwd~~~~~~~ 158 (393)
T 1erj_A 134 DGKFLATGAED--------RLIRIWDIENRKIV 158 (393)
T ss_dssp TSSEEEEEETT--------SCEEEEETTTTEEE
T ss_pred CCCEEEEEcCC--------CeEEEEECCCCcEE
Confidence 56677777643 35788898877543
No 198
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=86.46 E-value=15 Score=39.64 Aligned_cols=92 Identities=13% Similarity=0.077 Sum_probs=48.6
Q ss_pred CCEEEEEeccCCCCCceeeEE-EEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVD-VYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~-~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~ 205 (434)
+++.++++.. ...+| .+|..+.+-..+. .. ......++.. +++.++++.. -..++.+|+.
T Consensus 347 dg~~l~~~s~------~~~l~~~~d~~~~~~~~l~--~~--~~~~~~~~~SpDG~~la~~~~--------~~~v~~~d~~ 408 (1045)
T 1k32_A 347 TKVAFIHGTR------EGDFLGIYDYRTGKAEKFE--EN--LGNVFAMGVDRNGKFAVVAND--------RFEIMTVDLE 408 (1045)
T ss_dssp SEEEEEEEET------TEEEEEEEETTTCCEEECC--CC--CCSEEEEEECTTSSEEEEEET--------TSEEEEEETT
T ss_pred CCCeEEEEEC------CCceEEEEECCCCCceEec--CC--ccceeeeEECCCCCEEEEECC--------CCeEEEEECC
Confidence 5554555443 13588 9999988776665 21 1122333333 5555555542 2478999999
Q ss_pred CCceEecCCCCCCcccceEEEECCEEEEEcCC
Q 013909 206 TRKWDSIPPLPSPRYSPATQLWRGRLHVMGGS 237 (434)
Q Consensus 206 t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 237 (434)
+.+-..+..-........+..-+++.+++++.
T Consensus 409 tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~ 440 (1045)
T 1k32_A 409 TGKPTVIERSREAMITDFTISDNSRFIAYGFP 440 (1045)
T ss_dssp TCCEEEEEECSSSCCCCEEECTTSCEEEEEEE
T ss_pred CCceEEeccCCCCCccceEECCCCCeEEEEec
Confidence 88766553211111122222335665555543
No 199
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=86.44 E-value=17 Score=32.20 Aligned_cols=103 Identities=11% Similarity=0.158 Sum_probs=46.6
Q ss_pred CCEEEEEeccCCCCCCCCCceeEEEECCC--CceEecCCCCCCcccceEEEE----CCEEEEEcCCCCCCCCCCcceEEE
Q 013909 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSET--RKWDSIPPLPSPRYSPATQLW----RGRLHVMGGSKENRHTPGLEHWSI 251 (434)
Q Consensus 178 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t--~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~ 251 (434)
++.+++.|+.+ ..+.+||..+ ..++.+..+.........+.+ ++++++.|+.+ ..+.+|++
T Consensus 22 ~~~~l~~~~~d--------g~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d-----g~v~vwd~ 88 (351)
T 3f3f_A 22 YGRHVATCSSD--------QHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD-----KTVKLWEE 88 (351)
T ss_dssp SSSEEEEEETT--------SEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETT-----SCEEEEEE
T ss_pred CCCEEEEeeCC--------CeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCC-----CeEEEEec
Confidence 45566666643 3466666654 344443322222222222222 36677777654 35677776
Q ss_pred EeeccccccCceEEccCCCCCCCceeEEEE--C--CEEEEEcCCCC
Q 013909 252 AVKDGKALEKAWRTEIPIPRGGPHRACFVF--N--DRLFVVGGQEG 293 (434)
Q Consensus 252 ~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~--~--~~iyv~GG~~~ 293 (434)
...........|..+..+.........+.+ + +.+++.|+.++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 134 (351)
T 3f3f_A 89 DPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDG 134 (351)
T ss_dssp CTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTC
T ss_pred CCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCC
Confidence 411111112334443333222221122223 3 66777777654
No 200
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=86.32 E-value=19 Score=32.58 Aligned_cols=215 Identities=12% Similarity=0.054 Sum_probs=103.3
Q ss_pred eEEEEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCCC--ceEecCCC------C
Q 013909 146 HVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETR--KWDSIPPL------P 216 (434)
Q Consensus 146 ~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~--~W~~~~~~------p 216 (434)
.+.++|+.+.+......... ...-+++++. ++.||+.... ...+.+||+... .-..+... +
T Consensus 70 ~i~~~d~~~g~~~~~~~~~~--~~~p~gia~d~~g~l~v~d~~--------~~~v~~~~~~g~~~~~~~~~~~~~~g~~~ 139 (329)
T 3fvz_A 70 TILVIDPNNAEILQSSGKNL--FYLPHGLSIDTDGNYWVTDVA--------LHQVFKLDPHSKEGPLLILGRSMQPGSDQ 139 (329)
T ss_dssp CEEEECTTTCCEEEEECTTT--CSSEEEEEECTTSCEEEEETT--------TTEEEEECTTCSSCCSEEESBTTBCCCST
T ss_pred cEEEEECCCCeEEeccCCCc--cCCceEEEECCCCCEEEEECC--------CCEEEEEeCCCCeEEEEEecccCCCCCCc
Confidence 58999998877543211111 1223445554 6779987542 357899998765 22222210 1
Q ss_pred CCcccc-eEEEE--CCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCC-------CCCCC-ceeEEEE-C-C
Q 013909 217 SPRYSP-ATQLW--RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPI-------PRGGP-HRACFVF-N-D 283 (434)
Q Consensus 217 ~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~-------p~~~~-~~~~~~~-~-~ 283 (434)
...... .+++. +++|||..++.. ..+.+|+ +....-...... +.... ..+++.- + +
T Consensus 140 ~~~~~P~~ia~~~~~g~lyv~d~~~~----~~I~~~~-------~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g 208 (329)
T 3fvz_A 140 NHFCQPTDVAVEPSTGAVFVSDGYCN----SRIVQFS-------PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLD 208 (329)
T ss_dssp TCCSSEEEEEECTTTCCEEEEECSSC----CEEEEEC-------TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTT
T ss_pred cccCCCcEEEEeCCCCeEEEEeCCCC----CeEEEEc-------CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCC
Confidence 111112 23333 688999975321 2233332 222211111100 11111 1233333 4 8
Q ss_pred EEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCC
Q 013909 284 RLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPM 362 (434)
Q Consensus 284 ~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~ 362 (434)
.|||....+. .|.+|| .+.+....-..+...... .+++...+.+|+..|...-...
T Consensus 209 ~l~v~d~~~~----------------------~I~~~~~~~G~~~~~~~~~~~~~~~-~~~~~~pg~~~~~~g~~~v~~~ 265 (329)
T 3fvz_A 209 QLCVADRENG----------------------RIQCFKTDTKEFVREIKHASFGRNV-FAISYIPGFLFAVNGKPYFGDQ 265 (329)
T ss_dssp EEEEEETTTT----------------------EEEEEETTTCCEEEEECCTTTTTCE-EEEEEETTEEEEEECCCCTTCS
T ss_pred EEEEEECCCC----------------------EEEEEECCCCcEEEEEeccccCCCc-ceeeecCCEEEEeCCCEEeccC
Confidence 9999876543 388888 434443321111111111 1334555777777764322111
Q ss_pred ccceeeeccEEEEECCCCceEEe-ccCCCcee-eeeeEE-ECCEEEEEcc
Q 013909 363 TKRMILVGEVFQFHLDSLTWSVI-GKLPYRIK-TTLTGF-WDGWLYFTSG 409 (434)
Q Consensus 363 ~~~~~~~~~v~~yd~~~~~W~~~-~~lp~~r~-~~~~~~-~~~~l~v~GG 409 (434)
....+.++|+.+.+.... +..+.... -.+++. -++.|||...
T Consensus 266 -----~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~ 310 (329)
T 3fvz_A 266 -----EPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDA 310 (329)
T ss_dssp -----CCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEES
T ss_pred -----CCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEEC
Confidence 124799999888876554 22122221 123333 3568888865
No 201
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=85.99 E-value=18 Score=32.17 Aligned_cols=69 Identities=10% Similarity=-0.017 Sum_probs=33.5
Q ss_pred CEEEEEeccCCCCCceeeEEEEECCCCceE---ecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEEC
Q 013909 129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWV---DRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDS 204 (434)
Q Consensus 129 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~---~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~ 204 (434)
+++++.||.++ .+.++|+.+.+-. ....+... ...-.+++.. ++++++.|+.+ ..+..++.
T Consensus 51 ~~~l~S~s~D~------~i~vWd~~~~~~~~~~~~~~l~~h-~~~V~~~~~s~dg~~l~s~~~d--------~~i~~~~~ 115 (340)
T 4aow_A 51 PDMILSASRDK------TIIMWKLTRDETNYGIPQRALRGH-SHFVSDVVISSDGQFALSGSWD--------GTLRLWDL 115 (340)
T ss_dssp TTEEEEEETTS------CEEEEEECCSSSCSEEEEEEECCC-SSCEEEEEECTTSSEEEEEETT--------SEEEEEET
T ss_pred CCEEEEEcCCC------eEEEEECCCCCcccceeeEEEeCC-CCCEEEEEECCCCCEEEEEccc--------ccceEEee
Confidence 46788888763 2566666554321 11111110 0111223332 56666677643 34667777
Q ss_pred CCCceEec
Q 013909 205 ETRKWDSI 212 (434)
Q Consensus 205 ~t~~W~~~ 212 (434)
........
T Consensus 116 ~~~~~~~~ 123 (340)
T 4aow_A 116 TTGTTTRR 123 (340)
T ss_dssp TTTEEEEE
T ss_pred cccceeee
Confidence 76654433
No 202
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=85.89 E-value=12 Score=36.08 Aligned_cols=27 Identities=11% Similarity=0.174 Sum_probs=20.4
Q ss_pred EEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEE
Q 013909 344 VIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSV 384 (434)
Q Consensus 344 ~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 384 (434)
+..++++|+|=|. ..|+||..+.+=..
T Consensus 411 ~~~~g~~YFFkg~--------------~ywr~d~~~~~v~~ 437 (450)
T 1su3_A 411 FMKDGFFYFFHGT--------------RQYKFDPKTKRILT 437 (450)
T ss_dssp EEETTEEEEEETT--------------EEEEEETTTTEEEE
T ss_pred EEcCCeEEEEeCC--------------EEEEEECCcceEec
Confidence 5578999999873 57899987766443
No 203
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=85.85 E-value=20 Score=32.45 Aligned_cols=61 Identities=10% Similarity=-0.038 Sum_probs=33.8
Q ss_pred CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEE-ECCEEEEEcCCCCCCCCCCcceEEE
Q 013909 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQL-WRGRLHVMGGSKENRHTPGLEHWSI 251 (434)
Q Consensus 178 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~ 251 (434)
++.+++.|+.+ ..+..||..+.+-..+........-.+++. -++++++.|+.+ ..+.+|++
T Consensus 138 ~~~~l~s~s~d--------g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~d-----g~i~iwd~ 199 (343)
T 3lrv_A 138 NTEYFIWADNR--------GTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPD-----GILDVYNL 199 (343)
T ss_dssp -CCEEEEEETT--------CCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTT-----SCEEEEES
T ss_pred CCCEEEEEeCC--------CcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCC-----CEEEEEEC
Confidence 45667777743 357889988877644322222212222332 356777777754 35677774
No 204
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=85.80 E-value=7.6 Score=33.59 Aligned_cols=19 Identities=5% Similarity=0.141 Sum_probs=15.8
Q ss_pred ECCEEEEEcCcCCCCCCccceeeeccEEEEECC
Q 013909 346 VNNSIIITGGTTEKHPMTKRMILVGEVFQFHLD 378 (434)
Q Consensus 346 ~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~ 378 (434)
.++++|+|=|. ..|+||..
T Consensus 179 ~~g~~YfFkG~--------------~ywr~d~~ 197 (225)
T 3oyo_A 179 KEPEAYLFKGQ--------------NYVRIDFT 197 (225)
T ss_dssp STTEEEEEETT--------------EEEEEECC
T ss_pred CCCEEEEEECC--------------EEEEEeCC
Confidence 47899999883 58999988
No 205
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=85.65 E-value=18 Score=31.84 Aligned_cols=126 Identities=6% Similarity=-0.045 Sum_probs=61.1
Q ss_pred cceeeccCCCCcEEEcCCCCC-C---CCceeEEEECCEEEEE----eccCC-------CCCceeeEEEEECCCCceEecC
Q 013909 97 ATFADLPAPDLEWEQMPSAPV-P---RLDGAAIQIKNLFYVF----AGYGS-------LDYVHSHVDVYNFTDNKWVDRF 161 (434)
Q Consensus 97 ~~~~~~~~~~~~W~~~~~~p~-~---R~~~~~~~~~~~iyv~----GG~~~-------~~~~~~~v~~yd~~t~~W~~~~ 161 (434)
..+..+|+.+++.+.+..... . +....++.-++++|+. |.... .......+++||+. ++...+.
T Consensus 90 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~ 168 (296)
T 3e5z_A 90 RRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPI 168 (296)
T ss_dssp TEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEE
T ss_pred CeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEee
Confidence 368888988887766543211 1 1112222236788886 43210 01112369999988 5555443
Q ss_pred CCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECC-CCce---EecCCCCCCcccceEEEECCEEEEEc
Q 013909 162 DMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSE-TRKW---DSIPPLPSPRYSPATQLWRGRLHVMG 235 (434)
Q Consensus 162 ~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~-t~~W---~~~~~~p~~r~~~~~~~~~~~iyv~G 235 (434)
... ....+++.. ++++++.... ...+++||+. +.+. ..+-..........+..-+++|||..
T Consensus 169 ~~~----~~~~gi~~s~dg~~lv~~~~--------~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~ 235 (296)
T 3e5z_A 169 RDR----VKPNGLAFLPSGNLLVSDTG--------DNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA 235 (296)
T ss_dssp CCC----SSEEEEEECTTSCEEEEETT--------TTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE
T ss_pred cCC----CCCccEEECCCCCEEEEeCC--------CCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc
Confidence 211 112334443 4555544321 2578889876 4444 11111111111112223467888876
No 206
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=85.58 E-value=37 Score=35.30 Aligned_cols=247 Identities=11% Similarity=0.159 Sum_probs=119.0
Q ss_pred ceeeccCCCCcEEEcCCCCC-----CCCceeEEEE---CCEEEEEeccCCCCCceeeEEEEECCCCceEecCC-CCCC--
Q 013909 98 TFADLPAPDLEWEQMPSAPV-----PRLDGAAIQI---KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFD-MPKD-- 166 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~-----~R~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~-~~~~-- 166 (434)
.+++.+-...+|+.+...+. .+.-++++.. .+.+|+..|....... ..+++=+-.-.+|+++.. ++.+
T Consensus 38 gv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~-~~v~~S~DgG~TW~~~~~~~~~~~~ 116 (789)
T 1sqj_A 38 GAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW-AAFYVSEDRGQSFTIYESPFPMGAN 116 (789)
T ss_dssp CEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC-CEEEEESSTTSEEEEEECSSCCCTT
T ss_pred CEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcc-cEEEEECCCCCcceeccCCcccCcc
Confidence 45666656679999876332 1223344433 2468887664221111 335554445568998743 1110
Q ss_pred -CCc-eeeEEEEe---CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCC---CcccceEEEE----CCEEEEE
Q 013909 167 -MAH-SHLGVVSD---GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPS---PRYSPATQLW----RGRLHVM 234 (434)
Q Consensus 167 -~~r-~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~---~r~~~~~~~~----~~~iyv~ 234 (434)
..| ..+.+++. .+.+|+ |.. ...+++=+=.-.+|+++..+|. .-.....+.+ .+.||+.
T Consensus 117 ~~~~~~~~~iav~p~~~~~v~~-g~~--------~~gl~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~ 187 (789)
T 1sqj_A 117 DMGRNNGERLAVNPFNSNEVWM-GTR--------TEGIWKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYAS 187 (789)
T ss_dssp STTTTSCCCEEEETTEEEEEEE-ECS--------SSCEEEESSTTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEE
T ss_pred CCCccceeEEEEcCCCCCEEEE-Eec--------cCCEEEECCCCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEE
Confidence 012 22344544 356666 331 1234443333468999876542 1122223333 2467776
Q ss_pred cCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCC-------C---------ceeEEEE--CCEEEEEcCCCCCCC
Q 013909 235 GGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGG-------P---------HRACFVF--NDRLFVVGGQEGDFM 296 (434)
Q Consensus 235 GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~-------~---------~~~~~~~--~~~iyv~GG~~~~~~ 296 (434)
.... ..+|... -...+|+.+..+|... . .+.++.. ++.||+..+.....
T Consensus 188 ~~~~-------~~v~~S~-----DgG~TW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~p- 254 (789)
T 1sqj_A 188 ATAP-------QGMYVTH-----DGGVSWEPVAGQPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYADYPGP- 254 (789)
T ss_dssp ESST-------TCEEEES-----STTSSCEECTTCCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESSCSS-
T ss_pred EcCC-------CeEEEEc-----CCCcCcccCCCCcCccccccccccCcccccccccceeEEcCCCCeEEEEEecCCCC-
Confidence 4321 2234321 2356899877555432 0 0233322 88899884321000
Q ss_pred CCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCC-------CCcc---c-eeEEEE---CCEEEEEcCcCCCCC
Q 013909 297 AKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKP-------NSHI---E-CAWVIV---NNSIIITGGTTEKHP 361 (434)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~-------r~~~---~-~~~~~~---~~~i~v~GG~~~~~~ 361 (434)
. ......+++.+ ...+|+.+.+.|.. +..+ + ..+++. .+.||+.+.......
T Consensus 255 ----------~---~g~~g~l~~S~DgG~tW~~~~~~~~~~~p~~~~~~~~~~~g~~~lav~p~~~~~v~~~~~~~~~~~ 321 (789)
T 1sqj_A 255 ----------W---GVTFGEVWRQNRTSGAWDDITPRVGNSSPAPYNNQTFPAGGFCGLSVDATNPNRLVVITLDRDPGP 321 (789)
T ss_dssp ----------S---CCCCCCEEEEETTTCCEEECCCCTTTEESCCCSSCCSCCCEEEEEEEETTEEEEEEEEEECCCSCS
T ss_pred ----------C---CCCCceEEEEeCCCCceEECcCCCCccccccccccccccCceEEEEECCCCCCEEEEEEeccCCCc
Confidence 0 00122477776 67799999764431 0011 1 133343 346777664321100
Q ss_pred CccceeeeccEEEEECCCCceEEec
Q 013909 362 MTKRMILVGEVFQFHLDSLTWSVIG 386 (434)
Q Consensus 362 ~~~~~~~~~~v~~yd~~~~~W~~~~ 386 (434)
....+++=+-...+|+.+.
T Consensus 322 ------~~~~l~~S~DgG~tW~~~~ 340 (789)
T 1sqj_A 322 ------ALDSIYLSTDAGATWKDVT 340 (789)
T ss_dssp ------SCCCEEEESSTTSSEEEHH
T ss_pred ------ccccEEEecCCCCCceeCc
Confidence 0124555555677898876
No 207
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=85.14 E-value=22 Score=32.21 Aligned_cols=86 Identities=14% Similarity=0.079 Sum_probs=50.3
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEE-EeCCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV-SDGRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
++.+|+++-.. ..+++||+.+++..... ++. . -.+++ .-++++|+... ..+++||+.+
T Consensus 60 ~~~l~~~d~~~------~~i~~~d~~~~~~~~~~-~~~---~-v~~i~~~~dg~l~v~~~----------~gl~~~d~~~ 118 (326)
T 2ghs_A 60 SGTAWWFNILE------RELHELHLASGRKTVHA-LPF---M-GSALAKISDSKQLIASD----------DGLFLRDTAT 118 (326)
T ss_dssp TTEEEEEEGGG------TEEEEEETTTTEEEEEE-CSS---C-EEEEEEEETTEEEEEET----------TEEEEEETTT
T ss_pred CCEEEEEECCC------CEEEEEECCCCcEEEEE-CCC---c-ceEEEEeCCCeEEEEEC----------CCEEEEECCC
Confidence 36788886432 35899999988765442 221 1 22333 34788887531 3589999999
Q ss_pred CceEecCCCCC----CcccceEEEECCEEEEE
Q 013909 207 RKWDSIPPLPS----PRYSPATQLWRGRLHVM 234 (434)
Q Consensus 207 ~~W~~~~~~p~----~r~~~~~~~~~~~iyv~ 234 (434)
.+.+.+...+. .+....++.-++++|+.
T Consensus 119 g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~ 150 (326)
T 2ghs_A 119 GVLTLHAELESDLPGNRSNDGRMHPSGALWIG 150 (326)
T ss_dssp CCEEEEECSSTTCTTEEEEEEEECTTSCEEEE
T ss_pred CcEEEEeeCCCCCCCCCCCCEEECCCCCEEEE
Confidence 88876643321 12222222236778774
No 208
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=85.07 E-value=23 Score=32.55 Aligned_cols=191 Identities=7% Similarity=-0.011 Sum_probs=89.3
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
++++.++++.... ..+.++|+.+.+-........ .-.+++.. ++++++.++. +.+.+++..+
T Consensus 144 Dg~~la~as~~~d----~~i~iwd~~~~~~~~~~~~~~----~V~~v~fspdg~~l~s~s~---------~~~~~~~~~~ 206 (365)
T 4h5i_A 144 EGTVAAIASSKVP----AIMRIIDPSDLTEKFEIETRG----EVKDLHFSTDGKVVAYITG---------SSLEVISTVT 206 (365)
T ss_dssp TSSCEEEEESCSS----CEEEEEETTTTEEEEEEECSS----CCCEEEECTTSSEEEEECS---------SCEEEEETTT
T ss_pred CCCEEEEEECCCC----CEEEEeECCCCcEEEEeCCCC----ceEEEEEccCCceEEeccc---------eeEEEEEecc
Confidence 5665544332211 247889999876543222111 11233433 5666666541 3466777777
Q ss_pred CceEecCCCCCCcc--cceEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEc--cCCCCCCCceeEEE--
Q 013909 207 RKWDSIPPLPSPRY--SPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTE--IPIPRGGPHRACFV-- 280 (434)
Q Consensus 207 ~~W~~~~~~p~~r~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~--~~~p~~~~~~~~~~-- 280 (434)
.............. ...+..-+++.++.++.++.. ......|++ ........ ..+......-.++.
T Consensus 207 ~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~-~~~i~~~~~-------~~~~~~~~~~~~~~~~~~~V~~~~~S 278 (365)
T 4h5i_A 207 GSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGK-GIVLTKISI-------KSGNTSVLRSKQVTNRFKGITSMDVD 278 (365)
T ss_dssp CCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSC-CEEEEEEEE-------ETTEEEEEEEEEEESSCSCEEEEEEC
T ss_pred CcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcc-eeEEeeccc-------ccceecceeeeeecCCCCCeEeEEEC
Confidence 65443222211111 112224478888777654321 112333442 12222111 11111111112222
Q ss_pred ECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCC-CCccceeEEEECCEEEEEcCcCC
Q 013909 281 FNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKP-NSHIECAWVIVNNSIIITGGTTE 358 (434)
Q Consensus 281 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~-r~~~~~~~~~~~~~i~v~GG~~~ 358 (434)
.++++++.|+.++. |..|| .+.+ .+...... .......+...++++++-|+.+.
T Consensus 279 pdg~~lasgs~D~~----------------------V~iwd~~~~~--~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~ 334 (365)
T 4h5i_A 279 MKGELAVLASNDNS----------------------IALVKLKDLS--MSKIFKQAHSFAITEVTISPDSTYVASVSAAN 334 (365)
T ss_dssp TTSCEEEEEETTSC----------------------EEEEETTTTE--EEEEETTSSSSCEEEEEECTTSCEEEEEETTS
T ss_pred CCCCceEEEcCCCE----------------------EEEEECCCCc--EEEEecCcccCCEEEEEECCCCCEEEEEeCCC
Confidence 38889999987654 77787 4432 22111111 11112112334788888887663
Q ss_pred CCCCccceeeeccEEEEECCC
Q 013909 359 KHPMTKRMILVGEVFQFHLDS 379 (434)
Q Consensus 359 ~~~~~~~~~~~~~v~~yd~~~ 379 (434)
++.++|+..
T Consensus 335 ------------tvrvw~ip~ 343 (365)
T 4h5i_A 335 ------------TIHIIKLPL 343 (365)
T ss_dssp ------------EEEEEECCT
T ss_pred ------------eEEEEEcCC
Confidence 677888654
No 209
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=84.69 E-value=12 Score=37.30 Aligned_cols=59 Identities=14% Similarity=0.176 Sum_probs=35.3
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe--CCEEEEEeccCCCCCCCCCceeEEEECC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~ 205 (434)
++.+||.... .+.+.++|+.+++-.. .++. ...-|.+++. +..+|+.+. ...+..||+.
T Consensus 166 ~~~~~V~~~~------~~~V~viD~~t~~v~~--~i~~--g~~p~~v~~SpDGr~lyv~~~---------dg~V~viD~~ 226 (567)
T 1qks_A 166 ENLFSVTLRD------AGQIALIDGSTYEIKT--VLDT--GYAVHISRLSASGRYLFVIGR---------DGKVNMIDLW 226 (567)
T ss_dssp GGEEEEEETT------TTEEEEEETTTCCEEE--EEEC--SSCEEEEEECTTSCEEEEEET---------TSEEEEEETT
T ss_pred CceEEEEeCC------CCeEEEEECCCCeEEE--EEeC--CCCccceEECCCCCEEEEEcC---------CCeEEEEECC
Confidence 5677877543 2359999999876432 1222 2223344443 567887542 2479999995
No 210
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=84.42 E-value=27 Score=32.81 Aligned_cols=195 Identities=8% Similarity=0.074 Sum_probs=98.8
Q ss_pred eEEEEECCCCceEecCCCCCCCCceeeEEEEe--CCEEEEEeccCCCCCCCCCceeEEEECCCC----ceEec-C-CCCC
Q 013909 146 HVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSETR----KWDSI-P-PLPS 217 (434)
Q Consensus 146 ~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~----~W~~~-~-~~p~ 217 (434)
++.++|+....++.+.+. ...-.++++. +++||+.-- ....++++++... ..+.+ . .+..
T Consensus 93 ~I~~i~l~~~~~~~~~~~----~~~~~~l~~d~~~~~lywsD~--------~~~~I~~~~~~g~~~~~~~~~~~~~~~~~ 160 (400)
T 3p5b_L 93 EVRKMTLDRSEYTSLIPN----LRNVVALDTEVASNRIYWSDL--------SQRMICSTQLDRAHGVSSYDTVISRDIQA 160 (400)
T ss_dssp EEEEECTTSCSCEEEECS----CSCEEEEEEETTTTEEEEEET--------TTTEEEEEEC------CCCEEEECSSCSC
T ss_pred eeEEEccCCcceeEeccc----cCcceEEeeeeccCceEEEec--------CCCeEEEEEcccCCCCCcceEEEeCCCCC
Confidence 578888888877665322 1233455554 689999732 1357888888652 22222 2 2221
Q ss_pred CcccceEEE--ECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEcc--CCCCCCCceeEEEE--CCEEEEEcCC
Q 013909 218 PRYSPATQL--WRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEI--PIPRGGPHRACFVF--NDRLFVVGGQ 291 (434)
Q Consensus 218 ~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~p~~~~~~~~~~~--~~~iyv~GG~ 291 (434)
| ..+++ .+++||+.-... ..+.+++ +....-+.+. .+..+ .++++. ++.||+.--.
T Consensus 161 p---~glavD~~~~~lY~~d~~~-----~~I~~~~-------~~g~~~~~l~~~~~~~P---~~iavdp~~g~ly~td~~ 222 (400)
T 3p5b_L 161 P---DGLAVDWIHSNIYWTDSVL-----GTVSVAD-------TKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWG 222 (400)
T ss_dssp E---EEEEEETTTTEEEEEETTT-----TEEEEEC-------TTTCSEEEEEECSSCCE---EEEEEETTTTEEEEEECS
T ss_pred c---ccEEEEecCCceEEEECCC-----CeEEEEe-------CCCCceEEEEeCCCCCc---ceEEEecccCeEEEEeCC
Confidence 1 12333 378999984322 1222222 2222222222 12112 134443 6889987521
Q ss_pred CCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEc-C-CCCCCCCccceeEEE--ECCEEEEEcCcCCCCCCccce
Q 013909 292 EGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVL-P-PMPKPNSHIECAWVI--VNNSIIITGGTTEKHPMTKRM 366 (434)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~-~-~~p~~r~~~~~~~~~--~~~~i~v~GG~~~~~~~~~~~ 366 (434)
. ...|++++ ....=+.+ . .+..|. ++++ .+++||+.-..
T Consensus 223 ~---------------------~~~I~~~~~dG~~~~~~~~~~l~~P~-----glavd~~~~~lY~aD~~---------- 266 (400)
T 3p5b_L 223 T---------------------PAKIKKGGLNGVDIYSLVTENIQWPN-----GITLDLLSGRLYWVDSK---------- 266 (400)
T ss_dssp S---------------------SCCEEEEETTSCSCEEEECSSCSCEE-----EEEEETTTTEEEEEETT----------
T ss_pred C---------------------CCEEEEEeCCCCccEEEEECCCCceE-----EEEEEeCCCEEEEEECC----------
Confidence 1 12378887 43322222 2 222221 2244 37899998542
Q ss_pred eeeccEEEEECCCCceEEeccCCCc-eeeeeeEEECCEEEEEc
Q 013909 367 ILVGEVFQFHLDSLTWSVIGKLPYR-IKTTLTGFWDGWLYFTS 408 (434)
Q Consensus 367 ~~~~~v~~yd~~~~~W~~~~~lp~~-r~~~~~~~~~~~l~v~G 408 (434)
.+.|+++|++...-+.+...+.. ....++++.++.||+.-
T Consensus 267 --~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd 307 (400)
T 3p5b_L 267 --LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 307 (400)
T ss_dssp --TTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEE
T ss_pred --CCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEec
Confidence 13799999887654444322111 12346666888898875
No 211
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=84.28 E-value=23 Score=31.92 Aligned_cols=195 Identities=7% Similarity=0.037 Sum_probs=99.0
Q ss_pred eEEEEECCCCceEecCCCCCCCCceeeEEEEe--CCEEEEEeccCCCCCCCCCceeEEEECCC----CceEec-C-CCCC
Q 013909 146 HVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSET----RKWDSI-P-PLPS 217 (434)
Q Consensus 146 ~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t----~~W~~~-~-~~p~ 217 (434)
++.++|+.+.+...+.+. ...-+++++. +++||+.--. ...++++|+.. ..-+.+ . .+..
T Consensus 11 ~I~~i~~~~~~~~~~~~~----~~~p~g~~~d~~~~~ly~~D~~--------~~~I~~~~~~g~~~~~~~~~~~~~~~~~ 78 (316)
T 1ijq_A 11 EVRKMTLDRSEYTSLIPN----LRNVVALDTEVASNRIYWSDLS--------QRMICSTQLDRAHGVSSYDTVISRDIQA 78 (316)
T ss_dssp SEEEEETTSCCCEEEECS----CSSEEEEEEETTTTEEEEEETT--------TTEEEEEEC--------CEEEECSSCSC
T ss_pred eEEEEECCCcceEehhcC----CCceEEEEEEeCCCEEEEEECC--------CCcEEEEECCCCCCCcccEEEEeCCCCC
Confidence 488899988876654221 1233455554 6799997431 36789999876 222222 1 2222
Q ss_pred CcccceEEE--ECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEcc--CCCCCCCceeEEEE--CCEEEEEcCC
Q 013909 218 PRYSPATQL--WRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEI--PIPRGGPHRACFVF--NDRLFVVGGQ 291 (434)
Q Consensus 218 ~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~p~~~~~~~~~~~--~~~iyv~GG~ 291 (434)
| ..+++ .+++||+.-... ..+.+++ +....-+.+. .+..+ ..+++. ++.||+..-.
T Consensus 79 p---~glavd~~~~~ly~~d~~~-----~~I~~~~-------~~g~~~~~~~~~~~~~P---~~iavdp~~g~ly~~d~~ 140 (316)
T 1ijq_A 79 P---DGLAVDWIHSNIYWTDSVL-----GTVSVAD-------TKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWG 140 (316)
T ss_dssp C---CEEEEETTTTEEEEEETTT-----TEEEEEE-------TTSSSEEEEEECTTCCE---EEEEEETTTTEEEEEECS
T ss_pred c---CEEEEeecCCeEEEEECCC-----CEEEEEe-------CCCCceEEEEECCCCCc---ceEEeCCCCCEEEEEccC
Confidence 2 23343 478999984321 2333333 2222212221 12222 134443 7889987632
Q ss_pred CCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcC--CCCCCCCccceeEEEE--CCEEEEEcCcCCCCCCccce
Q 013909 292 EGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLP--PMPKPNSHIECAWVIV--NNSIIITGGTTEKHPMTKRM 366 (434)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~--~~p~~r~~~~~~~~~~--~~~i~v~GG~~~~~~~~~~~ 366 (434)
. ...+++++ ....-+.+. .+..| .++++- +++||+.-...
T Consensus 141 ~---------------------~~~I~~~~~dG~~~~~~~~~~~~~P-----~gla~d~~~~~lY~~D~~~--------- 185 (316)
T 1ijq_A 141 T---------------------PAKIKKGGLNGVDIYSLVTENIQWP-----NGITLDLLSGRLYWVDSKL--------- 185 (316)
T ss_dssp S---------------------SCEEEEEETTSCCEEEEECSSCSCE-----EEEEEETTTTEEEEEETTT---------
T ss_pred C---------------------CCeEEEEcCCCCCeEEEEECCCCCc-----eEEEEeccCCEEEEEECCC---------
Confidence 1 12488887 433333332 22222 133443 68999976432
Q ss_pred eeeccEEEEECCCCceEEeccCC-CceeeeeeEEECCEEEEEc
Q 013909 367 ILVGEVFQFHLDSLTWSVIGKLP-YRIKTTLTGFWDGWLYFTS 408 (434)
Q Consensus 367 ~~~~~v~~yd~~~~~W~~~~~lp-~~r~~~~~~~~~~~l~v~G 408 (434)
+.++++|++...-+.+...+ ....-.++++.++.||+.-
T Consensus 186 ---~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d 225 (316)
T 1ijq_A 186 ---HSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 225 (316)
T ss_dssp ---TEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEE
T ss_pred ---CeEEEEecCCCceEEEeecCCccCCcEEEEEECCEEEEEE
Confidence 37899998865444443221 1122345555678888875
No 212
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=83.73 E-value=43 Score=34.48 Aligned_cols=257 Identities=18% Similarity=0.229 Sum_probs=128.2
Q ss_pred CCcEEEcCCCCCC-CCceeEEEE-C--CEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCC---CceeeEEEEe-
Q 013909 106 DLEWEQMPSAPVP-RLDGAAIQI-K--NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM---AHSHLGVVSD- 177 (434)
Q Consensus 106 ~~~W~~~~~~p~~-R~~~~~~~~-~--~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~---~r~~~~~~~~- 177 (434)
..+|+.+.+-... |.. ++++. . +.||+.. .. ..+++.+-...+|+.+.+.+... ...-+++++.
T Consensus 10 ~~~w~~~~~~~~~g~i~-~i~~~p~~~~~~~~~~-~~------ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp 81 (737)
T 2cn3_A 10 PYKWDNVVIGGGGGFMP-GIVFNETEKDLIYARA-AI------GGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDP 81 (737)
T ss_dssp CEEEEEECCCSBCSCCC-EEEECSSSTTCEEEEC-SS------SCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECS
T ss_pred CCeeEEcccCCCcceee-EEEECCCCCCEEEEEe-cC------CcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCC
Confidence 4589988764433 332 33332 2 5677743 11 13899998899999986633200 1223444543
Q ss_pred --CCEEEEEeccCCCCCCCC-CceeEEEECCCCceEecCC-C------CCCcccceEEEE---CCEEEEEcCCCCCCCCC
Q 013909 178 --GRYIYIVSGQYGPQCRGP-TSRTFVLDSETRKWDSIPP-L------PSPRYSPATQLW---RGRLHVMGGSKENRHTP 244 (434)
Q Consensus 178 --~~~lyv~GG~~~~~~~~~-~~~~~~yd~~t~~W~~~~~-~------p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~ 244 (434)
.+.||+..|..... ..+ ...+++=.=.-.+|+.+.. . |.....+.+++. .+.||+... .+
T Consensus 82 ~~~~~v~v~~~~~~~~-~~~~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~-~g----- 154 (737)
T 2cn3_A 82 VDPNRVYIVAGMYTND-WLPNMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTR-CG----- 154 (737)
T ss_dssp SSTTCEEEEECSCSSS-SSCCCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECS-TT-----
T ss_pred CCCCEEEEEecccccc-cccCCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeec-cC-----
Confidence 36899876531111 111 1334444334568988742 1 111122344432 256666431 11
Q ss_pred CcceEEEEeeccccccCceEEccCCCCCC--------------CceeEEEEC----------CEEEEEcCCCCCCCCCCC
Q 013909 245 GLEHWSIAVKDGKALEKAWRTEIPIPRGG--------------PHRACFVFN----------DRLFVVGGQEGDFMAKPG 300 (434)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~W~~~~~~p~~~--------------~~~~~~~~~----------~~iyv~GG~~~~~~~~~~ 300 (434)
..+|... -...+|+.+..+|... .+...+.++ +.||+--...+.
T Consensus 155 -~gl~~S~-----DgG~tW~~~~~~~~~~~~~~~p~~~~~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~~~~~~------ 222 (737)
T 2cn3_A 155 -NGLWRST-----DYGVTWSKVESFPNPGTYIYDPNFDYTKDIIGVVWVVFDKSSSTPGNPTKTIYVGVADKNE------ 222 (737)
T ss_dssp -CCEEEES-----STTSSCEECTTCCCCCCCBSCTTSTTTCSBCCEEEEEECGGGSCTTSCCSCEEEEESCSSC------
T ss_pred -CcEEEeC-----CCCcceecccCCCCCcccccCcccccccCCCCEEEEEcCCCCcccCCCCCEEEEEecCCCc------
Confidence 1244321 2356899877655321 011222331 256654221111
Q ss_pred CCccccccccceeeCcEEEe-CCCCCeEEcCCCCCCCCccceeEEEE-CCEEEEEcCcCCCCCCccceeeeccEEEEECC
Q 013909 301 SPIFKCSRRHEVVYGDVYML-DDEMKWKVLPPMPKPNSHIECAWVIV-NNSIIITGGTTEKHPMTKRMILVGEVFQFHLD 378 (434)
Q Consensus 301 ~~~~~~~~~~~~~~~~v~~y-d~~~~W~~~~~~p~~r~~~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~ 378 (434)
.+++= |...+|+.+..+|.....+ .+++. ++.+|+..+......... ....+++++..
T Consensus 223 ---------------~v~~S~DgG~tW~~~~~~p~~~~~~--~~~~~~~~~l~~~~~d~~g~y~~~---~~g~v~~s~d~ 282 (737)
T 2cn3_A 223 ---------------SIYRSTDGGVTWKAVPGQPKGLLPH--HGVLASNGMLYITYGDTCGPYDGN---GKGQVWKFNTR 282 (737)
T ss_dssp ---------------CEEEESSTTSCCEECTTCCCSSEEE--EEEECTTSEEEEEEESSCCSSCCS---CCEEEEEEETT
T ss_pred ---------------cEEEEcCCCCceEECCCCCCcccce--EEEECCCCeEEEEecCCCCccccc---cCceEEEEeCC
Confidence 14444 3567899998666533222 22322 778888654321100000 12368999999
Q ss_pred CCceEEeccCCCc----eeeeeeEEE----CCEEEEEcc
Q 013909 379 SLTWSVIGKLPYR----IKTTLTGFW----DGWLYFTSG 409 (434)
Q Consensus 379 ~~~W~~~~~lp~~----r~~~~~~~~----~~~l~v~GG 409 (434)
..+|+.+...|.. +...+.+.+ .+.||+.+.
T Consensus 283 G~tW~~i~~~~~~~~~~~~~~~~i~v~p~~~~~ly~~~~ 321 (737)
T 2cn3_A 283 TGEWIDITPIPYSSSDNRFCFAGLAVDRQNPDIIMVTSM 321 (737)
T ss_dssp TCCEEECCSSCTTSTTCCSEEEEEEECTTCTTCEEEEEE
T ss_pred CCCEEEccCCCCCCcccccccccEEEcCCCCCEEEEEec
Confidence 9999998776542 233332333 257777764
No 213
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=83.70 E-value=37 Score=33.77 Aligned_cols=27 Identities=7% Similarity=0.044 Sum_probs=18.3
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEec
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDR 160 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 160 (434)
+++.++.|+.++ .+..+|..+.+-...
T Consensus 335 dg~~l~s~s~D~------~v~~Wd~~~~~~~~~ 361 (611)
T 1nr0_A 335 DGKTLFSADAEG------HINSWDISTGISNRV 361 (611)
T ss_dssp TSSEEEEEETTS------CEEEEETTTCCEEEC
T ss_pred CCCEEEEEeCCC------cEEEEECCCCceeee
Confidence 566777777653 378889888766543
No 214
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=83.53 E-value=33 Score=35.12 Aligned_cols=213 Identities=11% Similarity=0.030 Sum_probs=100.5
Q ss_pred ceeeccCCCCcEEEcCCCCCCCCceeEEEE--CCEEEEEeccCCCCCceeeEEEEECCC----CceEecC--CCCCCCCc
Q 013909 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTD----NKWVDRF--DMPKDMAH 169 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t----~~W~~~~--~~~~~~~r 169 (434)
.+..++........+.. ..+.-++++.. ++.||+.--. ...++++++.+ ..-..+. .+..
T Consensus 387 ~I~~id~~~~~~~~~~~--~~~~p~gla~d~~~~~Ly~sD~~------~~~I~~~~~~g~~~~~~~~~~i~~~~~~---- 454 (699)
T 1n7d_A 387 EVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLS------QRMICSTQLDRAHGVSSYDTVISRDIQA---- 454 (699)
T ss_dssp C-CEECTTSCCEECCSC--CCTTCCCCEEETTTTEEEECCTT------TTSBEEEESCCCCC-CCCCCBCCSCC------
T ss_pred ceEEEeCCCCcceeeec--cCcceEEEccccccCeEEEEecC------CCeEEEEecCCCCCCcceEEEEeCCCCC----
Confidence 34445555555443322 22233344443 5788886321 23488888875 1111111 1111
Q ss_pred eeeEEEE--eCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCC--CCCCcccceEEE--ECCEEEEEcCCCCCCCC
Q 013909 170 SHLGVVS--DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP--LPSPRYSPATQL--WRGRLHVMGGSKENRHT 243 (434)
Q Consensus 170 ~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~--~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~ 243 (434)
-.++++ .++.||+.-. ....++++|+....-+.+.. +..|+. +++ .++.||+.--.. .
T Consensus 455 -P~glavD~~~g~LY~tD~--------~~~~I~v~d~dg~~~~~l~~~~~~~P~g---iavDp~~g~ly~td~~~----~ 518 (699)
T 1n7d_A 455 -PDGLAVDWIHSNIYWTDS--------VLGTVSVADTKGVKRKTLFREQGSKPRA---IVVDPVHGFMYWTDWGT----P 518 (699)
T ss_dssp -CCCEECCCSSSBCEECCT--------TTSCEEEEBSSSCCEEEECCCSSCCCCC---EECCSSSSCCEECCCSS----S
T ss_pred -cceEEEEeeCCcEEEEec--------cCCeEEEEecCCCceEEEEeCCCCCcce---EEEccCCCcEEEcccCC----C
Confidence 123444 4688998521 13568899987765444422 333322 222 357788764111 1
Q ss_pred CCcceEEEEeeccccccCceEEcc--CCCCCCCceeEEE--ECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEE
Q 013909 244 PGLEHWSIAVKDGKALEKAWRTEI--PIPRGGPHRACFV--FNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYM 319 (434)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~W~~~~--~~p~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 319 (434)
..+++++ .....-+.+. .+..+. ++++ .+++||+.-... +.|++
T Consensus 519 ~~I~~~~-------~dG~~~~~l~~~~l~~Pn---Glavd~~~~~LY~aD~~~----------------------~~I~~ 566 (699)
T 1n7d_A 519 AKIKKGG-------LNGVDIYSLVTENIQWPN---GITLDLLSGRLYWVDSKL----------------------HSISS 566 (699)
T ss_dssp CCEEBCC-------SSSCCCCEESCSSCSSCC---CEEECTTTCCEEEEETTT----------------------TEEEE
T ss_pred CeEEEEe-------CCCCCeeEEEeCCCCCcc---EEEEeccCCEEEEEecCC----------------------CeEEE
Confidence 2222222 1111111111 121111 3333 268899876432 24888
Q ss_pred eC-CCCCeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceE
Q 013909 320 LD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWS 383 (434)
Q Consensus 320 yd-~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 383 (434)
+| ....-+.+...+. ...+..++++..+.||+.-... +.|.++|+.+.+-.
T Consensus 567 ~d~dG~~~~~~~~~~~-~~~~P~glavd~~~lywtd~~~------------~~V~~~d~~~G~~~ 618 (699)
T 1n7d_A 567 IDVNGGNRKTILEDEK-RLAHPFSLAVFEDKVFWTDIIN------------EAIFSANRLTGSDV 618 (699)
T ss_dssp ECSSSSCCEEECCCSS-SCSSCCCCEEETTEEEEECSTT------------TCEEEEETTTEEEE
T ss_pred EccCCCceEEEEecCC-cCCCceEeEEECCEEEEEeCCC------------CeEEEEEccCCCce
Confidence 88 4433333322111 1112234467888999987322 36888987665543
No 215
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=83.48 E-value=28 Score=32.13 Aligned_cols=63 Identities=10% Similarity=0.125 Sum_probs=32.7
Q ss_pred CEEEEEeccCCCCCceeeEEEEECCCCceEecC--CCCCCCCceeeEEEE--eCCEEEEEeccCCCCCCCCCceeEEEEC
Q 013909 129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRF--DMPKDMAHSHLGVVS--DGRYIYIVSGQYGPQCRGPTSRTFVLDS 204 (434)
Q Consensus 129 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~--~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~yd~ 204 (434)
+..++.|+.++ .+.+||+.+.+-...- ..+......-.+++. .++.+++.|+.++ .+..||.
T Consensus 170 ~~~l~s~s~D~------~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~--------~v~~wd~ 235 (380)
T 3iz6_a 170 ETRLITGSGDQ------TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT--------TVRLWDL 235 (380)
T ss_dssp SSCEEEECTTS------CEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTS--------CEEEEET
T ss_pred CCEEEEECCCC------cEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCC--------eEEEEEC
Confidence 34455565442 3788899887644321 111110111122333 2567888887543 5677887
Q ss_pred C
Q 013909 205 E 205 (434)
Q Consensus 205 ~ 205 (434)
.
T Consensus 236 ~ 236 (380)
T 3iz6_a 236 R 236 (380)
T ss_dssp T
T ss_pred C
Confidence 5
No 216
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=83.22 E-value=36 Score=33.29 Aligned_cols=52 Identities=12% Similarity=0.049 Sum_probs=29.3
Q ss_pred CCEEEEEcCcCCCCCCccceeeeccEEEEECCCC-ceEEeccCCCceeeeeeEEECCEEEEEcccc
Q 013909 347 NNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSL-TWSVIGKLPYRIKTTLTGFWDGWLYFTSGQR 411 (434)
Q Consensus 347 ~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~-~W~~~~~lp~~r~~~~~~~~~~~l~v~GG~~ 411 (434)
++++++.|+.++ .+.+||+++. +-...-.-............+++ ++.+|.+
T Consensus 552 ~~~~l~~~~~dg------------~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d 604 (615)
T 1pgu_A 552 EEDLVATGSLDT------------NIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGAD 604 (615)
T ss_dssp SCCEEEEEETTS------------CEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETT
T ss_pred CCCEEEEEcCCC------------cEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCC
Confidence 678888887653 6889999886 22221111111222334445788 6777644
No 217
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=83.16 E-value=9.9 Score=32.69 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=29.2
Q ss_pred CCEEEEEcCcCCCCCCccceeeeccEEEEECCC---CceEEeccCCCceeeeeeEE-----------ECCEEEEEccc
Q 013909 347 NNSIIITGGTTEKHPMTKRMILVGEVFQFHLDS---LTWSVIGKLPYRIKTTLTGF-----------WDGWLYFTSGQ 410 (434)
Q Consensus 347 ~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~---~~W~~~~~lp~~r~~~~~~~-----------~~~~l~v~GG~ 410 (434)
++++|+|-|. ..|+||.++ ..|...+.+|.... ++... .++.+|++-|.
T Consensus 126 ~gk~yfFkG~--------------~ywr~d~~~~P~~i~~~~~g~p~~vd-Aa~~~~~~~~~~~~~~~~~~~YFFkg~ 188 (219)
T 1hxn_A 126 SSRLHIMAGR--------------RLWWLDLKSGAQATWTELPWPHEKVD-GALCMEKPLGPNSCSTSGPNLYLIHGP 188 (219)
T ss_dssp CCEEEEEETT--------------EEEEEEGGGGGGCCCEEECCSCSCCS-EEEEESSCSSSCCSCSSSCEEEEEETT
T ss_pred CCEEEEEeCC--------------EEEEEeCCCCceEhhhcCCCCCCCcC-EEEEccccccccceeccCCeEEEEECC
Confidence 6899999883 579999754 33544433333222 22221 34689998774
No 218
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=82.86 E-value=10 Score=35.95 Aligned_cols=20 Identities=20% Similarity=0.203 Sum_probs=13.1
Q ss_pred CEEEEEeccCCCCCceeeEEEEECCC
Q 013909 129 NLFYVFAGYGSLDYVHSHVDVYNFTD 154 (434)
Q Consensus 129 ~~iyv~GG~~~~~~~~~~v~~yd~~t 154 (434)
+.+++.|+.++ .+.+||..+
T Consensus 141 ~~~lat~~~dg------~V~vwd~~~ 160 (430)
T 2xyi_A 141 ACVIATKTPSS------DVLVFDYTK 160 (430)
T ss_dssp EEEEEEECSSS------CEEEEEGGG
T ss_pred CcEEEEECCCC------cEEEEECCC
Confidence 46777776543 378888765
No 219
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=82.76 E-value=26 Score=31.39 Aligned_cols=84 Identities=14% Similarity=0.076 Sum_probs=44.9
Q ss_pred eeEEEE--CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCC-CceeeEEEEe--CCEEEEEeccCCCCC----
Q 013909 122 GAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM-AHSHLGVVSD--GRYIYIVSGQYGPQC---- 192 (434)
Q Consensus 122 ~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~-~r~~~~~~~~--~~~lyv~GG~~~~~~---- 192 (434)
++++.. ++.|||.-.. ..+.+||+.+++.+.+....... ...-..+++. ++.||+.-.......
T Consensus 83 ~gi~~~~~~g~l~v~d~~-------~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~ 155 (322)
T 2fp8_A 83 YDISYNLQNNQLYIVDCY-------YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQ 155 (322)
T ss_dssp EEEEEETTTTEEEEEETT-------TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHH
T ss_pred ceEEEcCCCCcEEEEECC-------CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccc
Confidence 344544 5789987422 13788998877665543221100 1122344444 578998642110000
Q ss_pred -----CCCCceeEEEECCCCceEec
Q 013909 193 -----RGPTSRTFVLDSETRKWDSI 212 (434)
Q Consensus 193 -----~~~~~~~~~yd~~t~~W~~~ 212 (434)
......+++||+.+.+.+.+
T Consensus 156 ~~~~~~~~~g~v~~~d~~~~~~~~~ 180 (322)
T 2fp8_A 156 QIMDTSDKTGRLIKYDPSTKETTLL 180 (322)
T ss_dssp HHHHHTCCCEEEEEEETTTTEEEEE
T ss_pred eehcccCCCceEEEEeCCCCEEEEe
Confidence 01235799999988776544
No 220
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=82.29 E-value=7.4 Score=32.79 Aligned_cols=58 Identities=12% Similarity=0.196 Sum_probs=34.1
Q ss_pred ccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEE-----e----ccCCCceeeeeeEEECCEEEEEc
Q 013909 338 HIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSV-----I----GKLPYRIKTTLTGFWDGWLYFTS 408 (434)
Q Consensus 338 ~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~-----~----~~lp~~r~~~~~~~~~~~l~v~G 408 (434)
...+++...++++|+|-|. ..|+||..+++=.. + +.+|. .-.++...++.+|++-
T Consensus 100 ~iDAA~~~~~g~~yfFkg~--------------~ywr~d~~~~~~~~gyPr~i~~~w~Gvp~--~idaa~~~~g~~Yffk 163 (195)
T 1itv_A 100 QVTGALRSGRGKMLLFSGR--------------RLWRFDVKAQMVDPRSASEVDRMFPGVPL--DTHDVFQFREKAYFCQ 163 (195)
T ss_dssp CCCEEEECSTTEEEEEETT--------------EEEEEETTTTEECGGGCEEHHHHSTTSCS--SCSEEEEETTEEEEEE
T ss_pred ceeEEEEcCCCeEEEEeCC--------------EEEEEeCCcccccCCCccChhhcCCCCCC--CCCEEEEeCCeEEEEe
Confidence 3444333347899999772 58999987654211 1 12232 2234445679999998
Q ss_pred ccc
Q 013909 409 GQR 411 (434)
Q Consensus 409 G~~ 411 (434)
|..
T Consensus 164 g~~ 166 (195)
T 1itv_A 164 DRF 166 (195)
T ss_dssp TTE
T ss_pred CCE
Confidence 743
No 221
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=82.26 E-value=50 Score=34.27 Aligned_cols=235 Identities=14% Similarity=0.222 Sum_probs=117.1
Q ss_pred CCcEEEcCCCCCCCCceeEEEE---CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCC---CCceeeEEEEe--
Q 013909 106 DLEWEQMPSAPVPRLDGAAIQI---KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKD---MAHSHLGVVSD-- 177 (434)
Q Consensus 106 ~~~W~~~~~~p~~R~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~---~~r~~~~~~~~-- 177 (434)
..+|+.+......| -.+++.. .+.+|+. +..+ -+++-+-.-.+|+.+...+.+ ..+.-+++++.
T Consensus 3 ~~~W~~~~~~~~g~-i~~i~~~p~~~~~~~a~-~~~g------gv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~ 74 (789)
T 1sqj_A 3 HYEFKNVAIGGGGY-ITGIVAHPKTKDLLYAR-TDIG------GAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPN 74 (789)
T ss_dssp -CEEEECCCCBCSC-EEEEEECSSSTTCEEEE-ESSS------CEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETT
T ss_pred cccceEccCCCCCc-EEEEEECCCCCCEEEEE-ecCC------CEEEecCCCCCeeECccCCCcccccCCceeEEEECCC
Confidence 45799988633332 2233322 2456664 3221 277777778899998653311 02334555554
Q ss_pred -CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCC-CC-----CCc-ccceEEEE---CCEEEEEcCCCCCCCCCCc
Q 013909 178 -GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP-LP-----SPR-YSPATQLW---RGRLHVMGGSKENRHTPGL 246 (434)
Q Consensus 178 -~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~-~p-----~~r-~~~~~~~~---~~~iyv~GG~~~~~~~~~~ 246 (434)
.+.+|+..|..... ....+++=+-.-.+|+++.. ++ ..| ..+.+++. .+.+|+. ... .
T Consensus 75 ~~~~i~~~~g~~~~~---~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g-~~~-------~ 143 (789)
T 1sqj_A 75 NPDRLYLAQGRYVGD---EWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMG-TRT-------E 143 (789)
T ss_dssp EEEEEEEEECSCTTS---SCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEE-CSS-------S
T ss_pred CCCEEEEEeCccCCC---cccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEE-ecc-------C
Confidence 25788876632111 01344444444568998842 11 122 22334443 3456663 311 2
Q ss_pred ceEEEEeeccccccCceEEccCCCC---CCCceeEEEE----CCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEE
Q 013909 247 EHWSIAVKDGKALEKAWRTEIPIPR---GGPHRACFVF----NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYM 319 (434)
Q Consensus 247 ~~~~~~~~~~~~~~~~W~~~~~~p~---~~~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 319 (434)
.+|... -...+|+.+...|. .......+.+ .+.||+...... .+++
T Consensus 144 gl~~S~-----DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~----------------------~v~~ 196 (789)
T 1sqj_A 144 GIWKSS-----DRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATAPQ----------------------GMYV 196 (789)
T ss_dssp CEEEES-----STTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEESSTT----------------------CEEE
T ss_pred CEEEEC-----CCCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEcCCC----------------------eEEE
Confidence 244421 24578998765442 1122233333 246776543211 2554
Q ss_pred eC-CCCCeEEcCCCCCCC----------------CccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCce
Q 013909 320 LD-DEMKWKVLPPMPKPN----------------SHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTW 382 (434)
Q Consensus 320 yd-~~~~W~~~~~~p~~r----------------~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W 382 (434)
=. ...+|+.+..+|... ..+...+...++.||+..+.... .... ....+++.+-...+|
T Consensus 197 S~DgG~TW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~-p~~g---~~g~l~~S~DgG~tW 272 (789)
T 1sqj_A 197 THDGGVSWEPVAGQPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYADYPG-PWGV---TFGEVWRQNRTSGAW 272 (789)
T ss_dssp ESSTTSSCEECTTCCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESSCS-SSCC---CCCCEEEEETTTCCE
T ss_pred EcCCCcCcccCCCCcCccccccccccCcccccccccceeEEcCCCCeEEEEEecCCC-CCCC---CCceEEEEeCCCCce
Confidence 43 667999987544321 00222211127888887432110 0000 123688999899999
Q ss_pred EEeccCCC
Q 013909 383 SVIGKLPY 390 (434)
Q Consensus 383 ~~~~~lp~ 390 (434)
+.+...|.
T Consensus 273 ~~~~~~~~ 280 (789)
T 1sqj_A 273 DDITPRVG 280 (789)
T ss_dssp EECCCCTT
T ss_pred EECcCCCC
Confidence 99876543
No 222
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=82.25 E-value=14 Score=38.03 Aligned_cols=195 Identities=7% Similarity=0.059 Sum_probs=93.8
Q ss_pred eEEEEECCCCceEecCCCCCCCCceeeEEEEe--CCEEEEEeccCCCCCCCCCceeEEEECCC----CceEecC--CCCC
Q 013909 146 HVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSET----RKWDSIP--PLPS 217 (434)
Q Consensus 146 ~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t----~~W~~~~--~~p~ 217 (434)
.+.++++.+.+...+.+.. ...+++++. ++.||+.-- ....++++++.+ ..-..+. .+..
T Consensus 387 ~I~~id~~~~~~~~~~~~~----~~p~gla~d~~~~~Ly~sD~--------~~~~I~~~~~~g~~~~~~~~~~i~~~~~~ 454 (699)
T 1n7d_A 387 EVRKMTLDRSEYTSLIPNL----RNVVALDTEVASNRIYWSDL--------SQRMICSTQLDRAHGVSSYDTVISRDIQA 454 (699)
T ss_dssp C-CEECTTSCCEECCSCCC----TTCCCCEEETTTTEEEECCT--------TTTSBEEEESCCCCC-CCCCCBCCSCC--
T ss_pred ceEEEeCCCCcceeeeccC----cceEEEccccccCeEEEEec--------CCCeEEEEecCCCCCCcceEEEEeCCCCC
Confidence 4777888887776553322 122344443 688998621 135688898875 1111111 1111
Q ss_pred CcccceEEE--ECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccC--CCCCCCceeEEE--ECCEEEEEcCC
Q 013909 218 PRYSPATQL--WRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIP--IPRGGPHRACFV--FNDRLFVVGGQ 291 (434)
Q Consensus 218 ~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~p~~~~~~~~~~--~~~~iyv~GG~ 291 (434)
| ..+++ .+++||+.-.. ...+.+++ +....-+.+.. +..++ .+++ .++.||+..-.
T Consensus 455 P---~glavD~~~g~LY~tD~~-----~~~I~v~d-------~dg~~~~~l~~~~~~~P~---giavDp~~g~ly~td~~ 516 (699)
T 1n7d_A 455 P---DGLAVDWIHSNIYWTDSV-----LGTVSVAD-------TKGVKRKTLFREQGSKPR---AIVVDPVHGFMYWTDWG 516 (699)
T ss_dssp C---CCEECCCSSSBCEECCTT-----TSCEEEEB-------SSSCCEEEECCCSSCCCC---CEECCSSSSCCEECCCS
T ss_pred c---ceEEEEeeCCcEEEEecc-----CCeEEEEe-------cCCCceEEEEeCCCCCcc---eEEEccCCCcEEEcccC
Confidence 2 12332 46788887321 12233332 22222222221 22222 3333 36778876421
Q ss_pred CCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcC--CCCCCCCccceeEEE--ECCEEEEEcCcCCCCCCccce
Q 013909 292 EGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLP--PMPKPNSHIECAWVI--VNNSIIITGGTTEKHPMTKRM 366 (434)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~--~~p~~r~~~~~~~~~--~~~~i~v~GG~~~~~~~~~~~ 366 (434)
. ...|++++ ....-+.+. .+..|.. . ++ .+++||+.-...
T Consensus 517 ~---------------------~~~I~~~~~dG~~~~~l~~~~l~~PnG---l--avd~~~~~LY~aD~~~--------- 561 (699)
T 1n7d_A 517 T---------------------PAKIKKGGLNGVDIYSLVTENIQWPNG---I--TLDLLSGRLYWVDSKL--------- 561 (699)
T ss_dssp S---------------------SCCEEBCCSSSCCCCEESCSSCSSCCC---E--EECTTTCCEEEEETTT---------
T ss_pred C---------------------CCeEEEEeCCCCCeeEEEeCCCCCccE---E--EEeccCCEEEEEecCC---------
Confidence 1 12477777 333222222 2333322 2 33 367899876422
Q ss_pred eeeccEEEEECCCCceEEeccCCCc-eeeeeeEEECCEEEEEc
Q 013909 367 ILVGEVFQFHLDSLTWSVIGKLPYR-IKTTLTGFWDGWLYFTS 408 (434)
Q Consensus 367 ~~~~~v~~yd~~~~~W~~~~~lp~~-r~~~~~~~~~~~l~v~G 408 (434)
+.|+++++....-+.+...+.. ....++++.++.||+.-
T Consensus 562 ---~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd 601 (699)
T 1n7d_A 562 ---HSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 601 (699)
T ss_dssp ---TEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEEC
T ss_pred ---CeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEe
Confidence 3689999876554554332211 22345566677777775
No 223
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=82.02 E-value=29 Score=31.34 Aligned_cols=24 Identities=17% Similarity=-0.060 Sum_probs=15.5
Q ss_pred CCEEEEEeccCCCCCCCCCceeEEEECCCCce
Q 013909 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKW 209 (434)
Q Consensus 178 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W 209 (434)
++.+.+.|+.+ ..+..||..+.+.
T Consensus 87 ~~~~l~s~s~D--------~~v~lwd~~~~~~ 110 (343)
T 2xzm_R 87 ENCFAISSSWD--------KTLRLWDLRTGTT 110 (343)
T ss_dssp STTEEEEEETT--------SEEEEEETTSSCE
T ss_pred CCCEEEEEcCC--------CcEEEEECCCCcE
Confidence 45566666643 4677889887654
No 224
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=81.58 E-value=27 Score=30.65 Aligned_cols=56 Identities=9% Similarity=0.080 Sum_probs=33.2
Q ss_pred cceeeccCCCCcEEEcCCCCCCCCceeEEEE--CCEEEEEeccCCCCCceeeEEEEECCCCceE
Q 013909 97 ATFADLPAPDLEWEQMPSAPVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWV 158 (434)
Q Consensus 97 ~~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~ 158 (434)
..+..+|..+++...+-.+......-.++.. +++.++.|+.++ .+.++|..+++-.
T Consensus 45 ~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg------~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA------EVQLWDVQQQKRL 102 (318)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTS------EEEEEETTTTEEE
T ss_pred CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCC------cEEEeecCCceeE
Confidence 4677778777765544333332222222323 667778887653 4788899887643
No 225
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=81.10 E-value=7 Score=35.27 Aligned_cols=97 Identities=8% Similarity=-0.033 Sum_probs=49.8
Q ss_pred ceeeccCCCCcEEE-cCCCCCCCCceeEEEE-CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEE
Q 013909 98 TFADLPAPDLEWEQ-MPSAPVPRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV 175 (434)
Q Consensus 98 ~~~~~~~~~~~W~~-~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~ 175 (434)
.++.+|+.+...+. +........-..++.. ++++|+.............++++|+.+.+...+.... ....+++
T Consensus 113 ~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~i~ 188 (333)
T 2dg1_A 113 GIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNI----SVANGIA 188 (333)
T ss_dssp EEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEE----SSEEEEE
T ss_pred eEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCC----CcccceE
Confidence 67888887766542 2222111111222222 6778886532211112346999999887766542211 1123344
Q ss_pred Ee-C-CEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 176 SD-G-RYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 176 ~~-~-~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
.. + +.||+.... ...+++||+.+
T Consensus 189 ~~~dg~~l~v~~~~--------~~~i~~~d~~~ 213 (333)
T 2dg1_A 189 LSTDEKVLWVTETT--------ANRLHRIALED 213 (333)
T ss_dssp ECTTSSEEEEEEGG--------GTEEEEEEECT
T ss_pred ECCCCCEEEEEeCC--------CCeEEEEEecC
Confidence 43 3 368876431 25688888754
No 226
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=80.76 E-value=29 Score=30.49 Aligned_cols=87 Identities=11% Similarity=0.019 Sum_probs=51.1
Q ss_pred CEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCCC
Q 013909 129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (434)
Q Consensus 129 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~ 207 (434)
+.||+++..+ ..+++||+.++ .+.+.. +. ..-.+++.. +++||+.... ...+.+||+.+.
T Consensus 40 ~~l~~~~~~~------~~i~~~~~~~~-~~~~~~-~~---~~~~~l~~~~dg~l~v~~~~--------~~~i~~~d~~~g 100 (296)
T 3e5z_A 40 SAVIFSDVRQ------NRTWAWSDDGQ-LSPEMH-PS---HHQNGHCLNKQGHLIACSHG--------LRRLERQREPGG 100 (296)
T ss_dssp TEEEEEEGGG------TEEEEEETTSC-EEEEES-SC---SSEEEEEECTTCCEEEEETT--------TTEEEEECSTTC
T ss_pred CEEEEEeCCC------CEEEEEECCCC-eEEEEC-CC---CCcceeeECCCCcEEEEecC--------CCeEEEEcCCCC
Confidence 3588887543 35899999988 555432 11 122344543 6778876421 257899999888
Q ss_pred ceEecCCCC----CCcccceEEEECCEEEEE
Q 013909 208 KWDSIPPLP----SPRYSPATQLWRGRLHVM 234 (434)
Q Consensus 208 ~W~~~~~~p----~~r~~~~~~~~~~~iyv~ 234 (434)
+.+.+.... ..+....++.-+++||+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vt 131 (296)
T 3e5z_A 101 EWESIADSFEGKKLNSPNDVCLAPDGSLWFS 131 (296)
T ss_dssp CEEEEECEETTEECCCCCCEEECTTSCEEEE
T ss_pred cEEEEeeccCCCCCCCCCCEEECCCCCEEEE
Confidence 877653211 112222333346789886
No 227
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=80.36 E-value=26 Score=29.70 Aligned_cols=94 Identities=13% Similarity=0.144 Sum_probs=50.3
Q ss_pred eEEEECCEEEEEeccCCCCCceeeEEEEECCCCceE--ec----CCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCC
Q 013909 123 AAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWV--DR----FDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGP 195 (434)
Q Consensus 123 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~--~~----~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~ 195 (434)
|++.+.+.+|+|=|. .+|+++.....+. .+ +.||. .-..+.... ++++|+|-|
T Consensus 28 Ai~~~~g~~y~Fkg~--------~~wr~~~~~~~~~p~~I~~~wp~Lp~---~iDAa~~~~~~~~iyfFkG--------- 87 (207)
T 1pex_A 28 AITSLRGETMIFKDR--------FFWRLHPQQVDAELFLTKSFWPELPN---RIDAAYEHPSHDLIFIFRG--------- 87 (207)
T ss_dssp EEEEETTEEEEEETT--------EEEEECSSSSCCEEEEHHHHCTTSCS---SCCEEEEETTTTEEEEEET---------
T ss_pred EEEeCCCcEEEEECC--------EEEEEeCCCcCCCceehhHhccCCCC---CccEEEEeccCCcEEEEcc---------
Confidence 345579999999763 3777776544332 11 23432 223333232 689999977
Q ss_pred CceeEEEECCCCce---EecCC--CCCCcccceEEEE---CCEEEEEcCC
Q 013909 196 TSRTFVLDSETRKW---DSIPP--LPSPRYSPATQLW---RGRLHVMGGS 237 (434)
Q Consensus 196 ~~~~~~yd~~t~~W---~~~~~--~p~~r~~~~~~~~---~~~iyv~GG~ 237 (434)
+.+|+|+..+..- +.+.. +|..-...-++.. ++++|+|-|.
T Consensus 88 -~~~w~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG~ 136 (207)
T 1pex_A 88 -RKFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGN 136 (207)
T ss_dssp -TEEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEETT
T ss_pred -CEEEEEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeCC
Confidence 5678887433211 22322 2321112333332 4899999763
No 228
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=80.33 E-value=13 Score=38.12 Aligned_cols=122 Identities=18% Similarity=0.245 Sum_probs=66.8
Q ss_pred eEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCC--------CCceeEEEECCEEEEEcCCCCC
Q 013909 223 ATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRG--------GPHRACFVFNDRLFVVGGQEGD 294 (434)
Q Consensus 223 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~--------~~~~~~~~~~~~iyv~GG~~~~ 294 (434)
+-++.+++||+.... ..+..+|. ..-...|+.....+.. ....+.++.+++||+... ++
T Consensus 65 ~P~v~~g~vyv~~~~------~~v~AlD~-----~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~-dg- 131 (689)
T 1yiq_A 65 TPIVVDGVMYTTGPF------SVVYALDA-----RDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL-DG- 131 (689)
T ss_dssp CCEEETTEEEEECGG------GCEEEEET-----TTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-TS-
T ss_pred cCEEECCEEEEEcCC------CeEEEEEC-----CCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc-CC-
Confidence 345679999998642 12333332 1344568764433210 111245667888887542 21
Q ss_pred CCCCCCCCccccccccceeeCcEEEeC-CCC--CeEEcCC-CCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeec
Q 013909 295 FMAKPGSPIFKCSRRHEVVYGDVYMLD-DEM--KWKVLPP-MPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVG 370 (434)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~--~W~~~~~-~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~ 370 (434)
.++++| .+. .|+.-.. -+........+.++.++++|+-.+..+.. .-.
T Consensus 132 ---------------------~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~-------~~g 183 (689)
T 1yiq_A 132 ---------------------RLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFG-------VRG 183 (689)
T ss_dssp ---------------------EEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTC-------CBC
T ss_pred ---------------------EEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccC-------CCC
Confidence 489999 443 6887543 11111222334467789888743221111 124
Q ss_pred cEEEEECCCCc--eEEe
Q 013909 371 EVFQFHLDSLT--WSVI 385 (434)
Q Consensus 371 ~v~~yd~~~~~--W~~~ 385 (434)
.++.||.++.+ |+.-
T Consensus 184 ~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 184 YVTAYDAETGKEAWRFY 200 (689)
T ss_dssp EEEEEETTTCCEEEEEE
T ss_pred EEEEEECCCCcEEEEec
Confidence 79999998877 8764
No 229
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=80.31 E-value=59 Score=33.80 Aligned_cols=194 Identities=8% Similarity=0.059 Sum_probs=97.4
Q ss_pred eEEEEECCCCceEecCCCCCCCCceeeEEEEe--CCEEEEEeccCCCCCCCCCceeEEEECCCC----ce-EecC-CCCC
Q 013909 146 HVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSETR----KW-DSIP-PLPS 217 (434)
Q Consensus 146 ~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~----~W-~~~~-~~p~ 217 (434)
.+..+++....+..+.... +...++++. +++||+.-.. ...++++++... .. ..+. .+..
T Consensus 405 ~Ir~i~l~~~~~~~l~~~~----~~~~gl~~d~~~~~lY~sD~~--------~~~I~~~~l~g~~~~~~~~~vi~~~l~~ 472 (791)
T 3m0c_C 405 EVRKMTLDRSEYTSLIPNL----RNVVALDTEVASNRIYWSDLS--------QRMICSTQLDRAHGVSSYDTVISRDIQA 472 (791)
T ss_dssp SEEEECTTSCCCEEEECSC----SSEEEEEEETTTTEEEEEETT--------TTEEEEEEC--------CEEEECSSCSC
T ss_pred ceeEeeccCCcceeeecCC----CceEEEeecccCCeeEEeecc--------ceeEEEEeccCCCCCcceeEEEecCCCC
Confidence 3677777777776553321 223445553 6899997431 356788887642 22 2222 2222
Q ss_pred CcccceEEE--ECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEcc--CCCCCCCceeEEEE--CCEEEEEcCC
Q 013909 218 PRYSPATQL--WRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEI--PIPRGGPHRACFVF--NDRLFVVGGQ 291 (434)
Q Consensus 218 ~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~p~~~~~~~~~~~--~~~iyv~GG~ 291 (434)
|. .+++ .+++||+.-.. ...+.+++ .....-+.+. .+..+ .++++. ++.||+.--.
T Consensus 473 P~---GLAvD~~~~~LY~tD~~-----~~~I~v~~-------ldG~~~~~l~~~~l~~P---~gIaVDp~~g~LYwtD~g 534 (791)
T 3m0c_C 473 PD---GLAVDWIHSNIYWTDSV-----LGTVSVAD-------TKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWG 534 (791)
T ss_dssp CC---EEEEETTTTEEEEEETT-----TTEEEEEE-------TTSSSEEEEEECTTCCE---EEEEEETTTTEEEEEECS
T ss_pred cc---eeeeeecCCcEEEEecC-----CCeEEEEe-------CCCCeEEEEEeCCCCCc---ceEEEecCCCCEEEecCC
Confidence 22 2333 46799998432 22333333 2222222222 12222 144443 6899987521
Q ss_pred CCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcC--CCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceee
Q 013909 292 EGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLP--PMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMIL 368 (434)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~--~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~ 368 (434)
. ...|++.+ ....-+.+. .+..|. +.++-..+++||+.-..
T Consensus 535 ~---------------------~~~I~~~~~dG~~~~~lv~~~l~~P~---GLavD~~~~~LYwaD~~------------ 578 (791)
T 3m0c_C 535 T---------------------PAKIKKGGLNGVDIYSLVTENIQWPN---GITLDLLSGRLYWVDSK------------ 578 (791)
T ss_dssp S---------------------SCEEEEEETTSCCEEEEECSSCSCEE---EEEEETTTTEEEEEETT------------
T ss_pred C---------------------CCeEEEEecCCCceEEEEeCCCCCce---EEEEecCCCeEEEEeCC------------
Confidence 1 12377777 433333332 232222 22212247899998532
Q ss_pred eccEEEEECCCCceEEecc----CCCceeeeeeEEECCEEEEEc
Q 013909 369 VGEVFQFHLDSLTWSVIGK----LPYRIKTTLTGFWDGWLYFTS 408 (434)
Q Consensus 369 ~~~v~~yd~~~~~W~~~~~----lp~~r~~~~~~~~~~~l~v~G 408 (434)
.+.|+++++....=..+.. ++.| .++++.+++||+.-
T Consensus 579 ~~~I~~~d~dG~~~~~v~~~~~~l~~P---~glav~~~~lYwtD 619 (791)
T 3m0c_C 579 LHSISSIDVNGGNRKTILEDEKRLAHP---FSLAVFEDKVFWTD 619 (791)
T ss_dssp TTEEEEEETTSCSCEEEEECTTTTSSE---EEEEEETTEEEEEE
T ss_pred CCcEEEEecCCCceEEEecCCCccCCC---CEEEEeCCEEEEEE
Confidence 1379999987765444432 3333 45666788888874
No 230
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=78.77 E-value=37 Score=30.59 Aligned_cols=62 Identities=6% Similarity=0.077 Sum_probs=33.0
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEe-cCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVD-RFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~ 205 (434)
++.+++.|+.++ .+.++|..+.+... +.... ..-.+++.. +++.++.||.+ ..+..||..
T Consensus 87 ~~~~l~s~s~D~------~v~lwd~~~~~~~~~~~~h~----~~v~~v~~sp~~~~l~s~~~d--------~~i~~wd~~ 148 (343)
T 2xzm_R 87 ENCFAISSSWDK------TLRLWDLRTGTTYKRFVGHQ----SEVYSVAFSPDNRQILSAGAE--------REIKLWNIL 148 (343)
T ss_dssp STTEEEEEETTS------EEEEEETTSSCEEEEEECCC----SCEEEEEECSSTTEEEEEETT--------SCEEEEESS
T ss_pred CCCEEEEEcCCC------cEEEEECCCCcEEEEEcCCC----CcEEEEEECCCCCEEEEEcCC--------CEEEEEecc
Confidence 456666776542 47888998876432 21111 112233332 45556666643 346677776
Q ss_pred CC
Q 013909 206 TR 207 (434)
Q Consensus 206 t~ 207 (434)
..
T Consensus 149 ~~ 150 (343)
T 2xzm_R 149 GE 150 (343)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 231
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=78.74 E-value=13 Score=34.74 Aligned_cols=27 Identities=11% Similarity=0.141 Sum_probs=20.0
Q ss_pred EEE-CCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEE
Q 013909 344 VIV-NNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSV 384 (434)
Q Consensus 344 ~~~-~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 384 (434)
... ++++|+|=|. ..|+||..+.+-..
T Consensus 328 ~~~~~g~~YfFkg~--------------~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 328 FYSKNKYYYFFQGS--------------NQFEYDFLLQRITK 355 (365)
T ss_dssp EEETTTEEEEEETT--------------EEEEEETTTTEEEE
T ss_pred eEecCCcEEEEeCC--------------EEEEEECCccEEec
Confidence 444 8899999872 58999988776544
No 232
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=78.39 E-value=31 Score=29.47 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=29.8
Q ss_pred ECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEE-----e----ccCCCceeeeeeEEEC--CEEEEEccc
Q 013909 346 VNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSV-----I----GKLPYRIKTTLTGFWD--GWLYFTSGQ 410 (434)
Q Consensus 346 ~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~-----~----~~lp~~r~~~~~~~~~--~~l~v~GG~ 410 (434)
.++++|+|=|. ..|+||..+++-.. + ..+|. .-.++...+ +++|++-|.
T Consensus 134 ~~g~~YfFkG~--------------~ywr~d~~~~~v~~gyPr~i~~~w~g~p~--~idaAf~~~~~g~~YfFkg~ 193 (218)
T 1gen_A 134 KNKKTYIFAGD--------------KFWRYNEVKKKMDPGFPKLIADAWNAIPD--NLDAVVDLQGGGHSYFFKGA 193 (218)
T ss_dssp TTTEEEEEETT--------------EEEEEETTTTEECSSCCEEHHHHSSSCCS--SCSEEEECTTTCEEEEEETT
T ss_pred CCCeEEEEECC--------------EEEEEECccccccCCCCcchhhccCCCCC--CCCEEEEEcCCCcEEEEECC
Confidence 37899999872 58999987764211 1 11222 223444444 899999774
No 233
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=77.77 E-value=43 Score=30.72 Aligned_cols=194 Identities=8% Similarity=0.066 Sum_probs=102.1
Q ss_pred eEEEEECCCCceEecCCCCCCCCceeeEEEEe--CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecC--CCCCCccc
Q 013909 146 HVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP--PLPSPRYS 221 (434)
Q Consensus 146 ~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~--~~p~~r~~ 221 (434)
.+.++++.....+.+.+.. ....+++.. ++.||+.-- ....++++++....-+.+. .+..|
T Consensus 54 ~I~~i~~~g~~~~~~~~~~----~~~~~l~~d~~~~~ly~~D~--------~~~~I~r~~~~g~~~~~~~~~~~~~p--- 118 (349)
T 3v64_C 54 DIRQVLPHRSEYTLLLNNL----ENAIALDFHHRRELVFWSDV--------TLDRILRANLNGSNVEEVVSTGLESP--- 118 (349)
T ss_dssp CEEEECTTSCCEEEEECSC----SCEEEEEEETTTTEEEEEET--------TTTEEEEEETTSCSCEEEECSSCSCC---
T ss_pred ceEEEeCCCCeeEEeecCC----CceEEEEEeccccEEEEEec--------cCCceEEEecCCCCceEEEeCCCCCc---
Confidence 4788888887776553321 223445543 689998732 1367899999877655442 22222
Q ss_pred ceEEE--ECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEcc--CCCCCCCceeEEEE--CCEEEEEcCCCCCC
Q 013909 222 PATQL--WRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEI--PIPRGGPHRACFVF--NDRLFVVGGQEGDF 295 (434)
Q Consensus 222 ~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~p~~~~~~~~~~~--~~~iyv~GG~~~~~ 295 (434)
..+++ .+++||+.-... ..+.+++ +....-+.+. .+..+ ..+++. ++.||+..-..
T Consensus 119 ~glavd~~~g~ly~~d~~~-----~~I~~~~-------~dG~~~~~l~~~~l~~P---~~iavdp~~g~ly~td~~~--- 180 (349)
T 3v64_C 119 GGLAVDWVHDKLYWTDSGT-----SRIEVAN-------LDGAHRKVLLWQSLEKP---RAIALHPMEGTIYWTDWGN--- 180 (349)
T ss_dssp CEEEEETTTTEEEEEETTT-----TEEEEEE-------TTSCSCEEEECTTCSCE---EEEEEETTTTEEEEEECSS---
T ss_pred cEEEEecCCCeEEEEcCCC-----CeEEEEc-------CCCCceEEEEeCCCCCc---ceEEEecCcCeEEEeccCC---
Confidence 22333 478999884321 2233333 2222212221 12122 234443 78899875432
Q ss_pred CCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCC--CCCCCCccceeEEE--ECCEEEEEcCcCCCCCCccceeeec
Q 013909 296 MAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPP--MPKPNSHIECAWVI--VNNSIIITGGTTEKHPMTKRMILVG 370 (434)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~--~p~~r~~~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~ 370 (434)
...|++++ ....-+.+.. +..| .++++ .+++||+.-... +
T Consensus 181 ------------------~~~I~r~~~dG~~~~~~~~~~~~~P-----nGla~d~~~~~lY~aD~~~------------~ 225 (349)
T 3v64_C 181 ------------------TPRIEASSMDGSGRRIIADTHLFWP-----NGLTIDYAGRRMYWVDAKH------------H 225 (349)
T ss_dssp ------------------SCEEEEEETTSCSCEESCCSSCSCE-----EEEEEETTTTEEEEEETTT------------T
T ss_pred ------------------CCEEEEEeCCCCCcEEEEECCCCCc-----ceEEEeCCCCEEEEEECCC------------C
Confidence 12488887 4443334322 2222 12344 478999985422 3
Q ss_pred cEEEEECCCCceEEeccCCCceeeeeeEEECCEEEEEc
Q 013909 371 EVFQFHLDSLTWSVIGKLPYRIKTTLTGFWDGWLYFTS 408 (434)
Q Consensus 371 ~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~l~v~G 408 (434)
.++++|++...=+.+..... ..-.++++.++.||+.-
T Consensus 226 ~I~~~~~dG~~~~~~~~~~~-~~P~giav~~~~ly~td 262 (349)
T 3v64_C 226 VIERANLDGSHRKAVISQGL-PHPFAITVFEDSLYWTD 262 (349)
T ss_dssp EEEEEETTSCSCEEEECSSC-SSEEEEEEETTEEEEEE
T ss_pred EEEEEeCCCCceEEEEeCCC-CCceEEEEECCEEEEec
Confidence 68999987654343322111 12245555788888874
No 234
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=77.51 E-value=15 Score=37.52 Aligned_cols=122 Identities=16% Similarity=0.241 Sum_probs=66.8
Q ss_pred eEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCC--------CCceeEEEECCEEEEEcCCCCC
Q 013909 223 ATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRG--------GPHRACFVFNDRLFVVGGQEGD 294 (434)
Q Consensus 223 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~--------~~~~~~~~~~~~iyv~GG~~~~ 294 (434)
+-++.+++||+.... ..+..+|. +.-...|+.....+.. ....+.++.+++||+... +
T Consensus 72 ~P~v~~g~vyv~~~~------~~v~AlD~-----~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~-d-- 137 (677)
T 1kb0_A 72 TPVVVDGIMYVSASW------SVVHAIDT-----RTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-D-- 137 (677)
T ss_dssp CCEEETTEEEEECGG------GCEEEEET-----TTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-T--
T ss_pred CCEEECCEEEEECCC------CeEEEEEC-----CCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC-C--
Confidence 345679999998642 12333332 1344568775432210 112245667898888643 1
Q ss_pred CCCCCCCCccccccccceeeCcEEEeC-CCC--CeEEcCC-CCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeec
Q 013909 295 FMAKPGSPIFKCSRRHEVVYGDVYMLD-DEM--KWKVLPP-MPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVG 370 (434)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~--~W~~~~~-~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~ 370 (434)
..++++| .+. .|+.-.. -+........+.++.+++||+..+..+.. .-.
T Consensus 138 --------------------g~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~-------~~g 190 (677)
T 1kb0_A 138 --------------------GRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYG-------VRG 190 (677)
T ss_dssp --------------------SEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTC-------CBC
T ss_pred --------------------CEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccC-------CCC
Confidence 1489999 444 6887432 11111222234467788887754322211 124
Q ss_pred cEEEEECCCCc--eEEe
Q 013909 371 EVFQFHLDSLT--WSVI 385 (434)
Q Consensus 371 ~v~~yd~~~~~--W~~~ 385 (434)
.++.||.++.+ |+.-
T Consensus 191 ~v~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 191 YITAYDAETGERKWRWF 207 (677)
T ss_dssp EEEEEETTTCCEEEEEE
T ss_pred EEEEEECCCCcEEEEec
Confidence 79999998876 8764
No 235
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=77.34 E-value=45 Score=34.12 Aligned_cols=195 Identities=12% Similarity=0.080 Sum_probs=93.2
Q ss_pred eeEEEEECCCCce--EecCCCCCCCCceeeEEEE-eCCE-EEEEeccCCCCCCCCCceeEEEECCCC--c-eEecCCCCC
Q 013909 145 SHVDVYNFTDNKW--VDRFDMPKDMAHSHLGVVS-DGRY-IYIVSGQYGPQCRGPTSRTFVLDSETR--K-WDSIPPLPS 217 (434)
Q Consensus 145 ~~v~~yd~~t~~W--~~~~~~~~~~~r~~~~~~~-~~~~-lyv~GG~~~~~~~~~~~~~~~yd~~t~--~-W~~~~~~p~ 217 (434)
..++.++..+..- ..+...+.. +........ -+++ |++... .... ..++++.+|..+. + |+.+.+-..
T Consensus 243 ~~v~~~~lgt~~~~~~lv~~~~~~-~~~~~~~~~SpDG~~l~~~~~-~~~~---~~~~l~~~d~~~~~~~~~~~l~~~~~ 317 (741)
T 1yr2_A 243 QTVWLHRLGTPQSADQPVFATPEL-PKRGHGASVSSDGRWVVITSS-EGTD---PVNTVHVARVTNGKIGPVTALIPDLK 317 (741)
T ss_dssp CEEEEEETTSCGGGCEEEECCTTC-TTCEEEEEECTTSCEEEEEEE-CTTC---SCCEEEEEEEETTEECCCEEEECSSS
T ss_pred CEEEEEECCCCchhCEEEeccCCC-CeEEEEEEECCCCCEEEEEEE-ccCC---CcceEEEEECCCCCCcccEEecCCCC
Confidence 4588889877652 122222211 122223333 3454 444433 2211 2478999999876 6 877754332
Q ss_pred CcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeecccccc--CceEEccCCCCCCCceeEEEECCEEEEEcCCCCCC
Q 013909 218 PRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALE--KAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDF 295 (434)
Q Consensus 218 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~--~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~ 295 (434)
..... +...+++||+....+.. ...+..++ ..+ ..|+.+.+-..... ..+...++++++....++.
T Consensus 318 ~~~~~-~~~dg~~l~~~s~~~~~--~~~l~~~d-------~~~~~~~~~~l~~~~~~~l-~~~~~~~~~lv~~~~~dg~- 385 (741)
T 1yr2_A 318 AQWDF-VDGVGDQLWFVSGDGAP--LKKIVRVD-------LSGSTPRFDTVVPESKDNL-ESVGIAGNRLFASYIHDAK- 385 (741)
T ss_dssp SCEEE-EEEETTEEEEEECTTCT--TCEEEEEE-------CSSSSCEEEEEECCCSSEE-EEEEEEBTEEEEEEEETTE-
T ss_pred ceEEE-EeccCCEEEEEECCCCC--CCEEEEEe-------CCCCccccEEEecCCCCeE-EEEEEECCEEEEEEEECCE-
Confidence 22222 23467788887543211 12223333 233 46887654332211 1334458888877655432
Q ss_pred CCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEE-ECCEEEEEcCcCCCCCCccceeeeccEE
Q 013909 296 MAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVI-VNNSIIITGGTTEKHPMTKRMILVGEVF 373 (434)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~v~ 373 (434)
..++.+| ....-+.+. +|....- ..+.. .++..+++...+.. .-.+++
T Consensus 386 -------------------~~l~~~~~~g~~~~~l~-~~~~~~v--~~~~~s~d~~~l~~~~ss~~--------~P~~i~ 435 (741)
T 1yr2_A 386 -------------------SQVLAFDLDGKPAGAVS-LPGIGSA--SGLSGRPGDRHAYLSFSSFT--------QPATVL 435 (741)
T ss_dssp -------------------EEEEEEETTSCEEEECB-CSSSCEE--EEEECCBTCSCEEEEEEETT--------EEEEEE
T ss_pred -------------------EEEEEEeCCCCceeecc-CCCCeEE--EEeecCCCCCEEEEEEcCCC--------CCCEEE
Confidence 3477787 444334432 2221111 11111 23332222221111 224799
Q ss_pred EEECCCCceEEec
Q 013909 374 QFHLDSLTWSVIG 386 (434)
Q Consensus 374 ~yd~~~~~W~~~~ 386 (434)
.||+.+++.+.+.
T Consensus 436 ~~d~~tg~~~~l~ 448 (741)
T 1yr2_A 436 ALDPATAKTTPWE 448 (741)
T ss_dssp EEETTTTEEEECS
T ss_pred EEECCCCcEEEEe
Confidence 9999988876663
No 236
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=77.34 E-value=5.7 Score=35.87 Aligned_cols=52 Identities=13% Similarity=0.091 Sum_probs=29.0
Q ss_pred eCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEE-CC-EEEEEcC
Q 013909 177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW-RG-RLHVMGG 236 (434)
Q Consensus 177 ~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG 236 (434)
.++++|+.++. ...++++|+.+.+....-+.+....-+.++.. ++ .+|+.+.
T Consensus 9 ~~~~~~v~~~~--------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~ 62 (349)
T 1jmx_B 9 AGHEYMIVTNY--------PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN 62 (349)
T ss_dssp TTCEEEEEEET--------TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET
T ss_pred CCCEEEEEeCC--------CCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC
Confidence 36778887763 25789999988875433223321112233332 33 5777764
No 237
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=77.25 E-value=28 Score=35.40 Aligned_cols=122 Identities=18% Similarity=0.262 Sum_probs=66.1
Q ss_pred eEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCC--------CCceeEEEECCEEEEEcCCCCC
Q 013909 223 ATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRG--------GPHRACFVFNDRLFVVGGQEGD 294 (434)
Q Consensus 223 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~--------~~~~~~~~~~~~iyv~GG~~~~ 294 (434)
+-++.+++||+..... .+..+|. ..-...|+.....+.. ....+.++.+++||+... ++
T Consensus 61 ~P~v~~g~vyv~~~~~------~v~AlD~-----~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-dg- 127 (668)
T 1kv9_A 61 TPLFHDGVIYTSMSWS------RVIAVDA-----ASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-DG- 127 (668)
T ss_dssp CCEEETTEEEEEEGGG------EEEEEET-----TTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-TS-
T ss_pred CCEEECCEEEEECCCC------eEEEEEC-----CCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC-CC-
Confidence 3456799999986421 2222321 1344568764432211 111245667888887542 21
Q ss_pred CCCCCCCCccccccccceeeCcEEEeC-CCC--CeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeecc
Q 013909 295 FMAKPGSPIFKCSRRHEVVYGDVYMLD-DEM--KWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGE 371 (434)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~--~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~ 371 (434)
.++++| .+. .|+.-..-+........+.++.+++||+..+..+.. .-..
T Consensus 128 ---------------------~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~-------~~g~ 179 (668)
T 1kv9_A 128 ---------------------RLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYG-------VRGF 179 (668)
T ss_dssp ---------------------EEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTC-------CBCE
T ss_pred ---------------------EEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcC-------CCCE
Confidence 489999 444 688754222222222334467788888743321111 1247
Q ss_pred EEEEECCCCc--eEEe
Q 013909 372 VFQFHLDSLT--WSVI 385 (434)
Q Consensus 372 v~~yd~~~~~--W~~~ 385 (434)
++.||+++.+ |+.-
T Consensus 180 v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 180 VSAYDADTGKLAWRFY 195 (668)
T ss_dssp EEEEETTTCCEEEEEE
T ss_pred EEEEECCCCcEEEEec
Confidence 9999998876 8763
No 238
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=77.12 E-value=56 Score=31.73 Aligned_cols=91 Identities=9% Similarity=-0.016 Sum_probs=42.7
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
++..++.|+.++ .+.++|.....-..+..... .-.+++.. +++.++.|+.+ ..+..+|...
T Consensus 273 d~~~l~~~~~d~------~i~~w~~~~~~~~~~~~h~~----~v~~~~~~~~~~~l~t~~~d--------~~i~~w~~~~ 334 (577)
T 2ymu_A 273 DGQTIASASDDK------TVKLWNRNGQLLQTLTGHSS----SVWGVAFSPDGQTIASASDD--------KTVKLWNRNG 334 (577)
T ss_dssp TSSEEEEEETTS------CEEEEETTSCEEEEECCCSS----CEEEEEECTTSSEEEEEETT--------SCEEEEETTS
T ss_pred CCCEEEEEeCCC------EEEEEeCCCcEEEEEecCCC----CeEEEEECCCCCEEEEEeCC--------CeEEEEeCCC
Confidence 556666666442 36777876655444432221 11233333 45566666533 2456677665
Q ss_pred CceEecCCCCCCcccceEE-EECCEEEEEcCCC
Q 013909 207 RKWDSIPPLPSPRYSPATQ-LWRGRLHVMGGSK 238 (434)
Q Consensus 207 ~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~ 238 (434)
..-..+.....+ -.+++ .-+++.++.|+.+
T Consensus 335 ~~~~~~~~~~~~--v~~~~~s~~g~~l~~~~~d 365 (577)
T 2ymu_A 335 QHLQTLTGHSSS--VWGVAFSPDGQTIASASDD 365 (577)
T ss_dssp CEEEEECCCSSC--EEEEEECTTSSEEEEEETT
T ss_pred CeeEEEeCCCCC--EEEEEECCCCCEEEEEeCC
Confidence 544433221111 11122 2255666666543
No 239
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=76.87 E-value=45 Score=33.11 Aligned_cols=94 Identities=9% Similarity=0.039 Sum_probs=48.2
Q ss_pred cceeeccCCCCcEEEcCCCCCCCCceeEEEE--CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEE
Q 013909 97 ATFADLPAPDLEWEQMPSAPVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGV 174 (434)
Q Consensus 97 ~~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~ 174 (434)
..+..+|..+++-. ..++....-|.++.. +.++|+.+ .+ ..+.+||+.+.+-+.+..++. ...-..+
T Consensus 177 ~~V~viD~~t~~v~--~~i~~g~~p~~v~~SpDGr~lyv~~-~d------g~V~viD~~~~t~~~v~~i~~--G~~P~~i 245 (567)
T 1qks_A 177 GQIALIDGSTYEIK--TVLDTGYAVHISRLSASGRYLFVIG-RD------GKVNMIDLWMKEPTTVAEIKI--GSEARSI 245 (567)
T ss_dssp TEEEEEETTTCCEE--EEEECSSCEEEEEECTTSCEEEEEE-TT------SEEEEEETTSSSCCEEEEEEC--CSEEEEE
T ss_pred CeEEEEECCCCeEE--EEEeCCCCccceEECCCCCEEEEEc-CC------CeEEEEECCCCCCcEeEEEec--CCCCcee
Confidence 36777887776432 223333333444433 44678764 21 359999996222222333322 1222234
Q ss_pred EEe------CCEEEEEeccCCCCCCCCCceeEEEECCCCce
Q 013909 175 VSD------GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKW 209 (434)
Q Consensus 175 ~~~------~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W 209 (434)
++. +..+|+..-. .+.+.++|..+.+=
T Consensus 246 a~s~~~~pDGk~l~v~n~~--------~~~v~ViD~~t~~~ 278 (567)
T 1qks_A 246 ETSKMEGWEDKYAIAGAYW--------PPQYVIMDGETLEP 278 (567)
T ss_dssp EECCSTTCTTTEEEEEEEE--------TTEEEEEETTTCCE
T ss_pred EEccccCCCCCEEEEEEcc--------CCeEEEEECCCCcE
Confidence 444 4467776321 25677889877653
No 240
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=76.76 E-value=39 Score=29.78 Aligned_cols=56 Identities=11% Similarity=0.035 Sum_probs=31.5
Q ss_pred eEEEEECCCCceEecCCCCCCCCceeeEEEEe--CCEEEEEeccCCCCCCCCCceeEEEECCCCceE
Q 013909 146 HVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWD 210 (434)
Q Consensus 146 ~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~ 210 (434)
.+.++|+.+.+-...-.++....+ -+.+++. ++.+|+.+.. ...++++|+.+.+-.
T Consensus 12 ~v~~~d~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~v~~~~--------~~~v~~~d~~~~~~~ 69 (337)
T 1pby_B 12 KLVVIDTEKMAVDKVITIADAGPT-PMVPMVAPGGRIAYATVNK--------SESLVKIDLVTGETL 69 (337)
T ss_dssp EEEEEETTTTEEEEEEECTTCTTC-CCCEEECTTSSEEEEEETT--------TTEEEEEETTTCCEE
T ss_pred eEEEEECCCCcEEEEEEcCCCCCC-ccceEEcCCCCEEEEEeCC--------CCeEEEEECCCCCeE
Confidence 488999988765432222210001 1223332 3478877542 257899999887654
No 241
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=76.27 E-value=26 Score=29.42 Aligned_cols=54 Identities=13% Similarity=0.118 Sum_probs=29.2
Q ss_pred EEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCc---eEec----CCCCCCcccceEEEECCEEEEEcCC
Q 013909 173 GVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK---WDSI----PPLPSPRYSPATQLWRGRLHVMGGS 237 (434)
Q Consensus 173 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~---W~~~----~~~p~~r~~~~~~~~~~~iyv~GG~ 237 (434)
+++..++++|+|-| +.+|+++..... =..+ +.+|..- ..+....++++|+|-|.
T Consensus 10 A~~~~~g~~~fFkg----------~~~w~~~~~~~~~gyP~~I~~~w~glP~~i-DAa~~~~~g~~yfFkg~ 70 (196)
T 3c7x_A 10 TVAMLRGEMFVFKE----------RWFWRVRNNQVMDGYPMPIGQFWRGLPASI-NTAYERKDGKFVFFKGD 70 (196)
T ss_dssp EEEEETTEEEEEET----------TEEEEEETTEECTTCSEEHHHHSTTCCSSC-CEEEECTTSCEEEEETT
T ss_pred EEEEcCCEEEEEEC----------CEEEEEECCccCCCCceEhhHhccCCCCCc-cEEEEeCCCcEEEecCC
Confidence 34567899999977 567888643210 0111 2344321 11111246889988663
No 242
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=76.06 E-value=34 Score=32.89 Aligned_cols=62 Identities=11% Similarity=0.030 Sum_probs=35.8
Q ss_pred eEEEECCEEEEEeccCCCCCceeeEEEEECCCCceEe--c----CCCCCCCCceeeEEEE-eCCEEEEEeccCCCCCCCC
Q 013909 123 AAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVD--R----FDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGP 195 (434)
Q Consensus 123 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~--~----~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~ 195 (434)
+++.+.+.+|+|-|. ..|+++.....+.. | +.+|. ....+... .++++|+|=|
T Consensus 267 Ai~~~~ge~y~Fkg~--------~~wr~~~~~~~~~p~~I~~~Wp~LP~---~iDAa~~~~~~g~~~fFKg--------- 326 (450)
T 1su3_A 267 AITTIRGEVMFFKDR--------FYMRTNPFYPEVELNFISVFWPQLPN---GLEAAYEFADRDEVRFFKG--------- 326 (450)
T ss_dssp EEEEETTEEEEEETT--------EEEECCTTSSSCEEEEGGGTCTTSCS---SCCEEEEEGGGTEEEEEET---------
T ss_pred eEEecCCeEEEEeCC--------EEEEEcCCCCcccceehhHhccCCCC---CeeEEEEEcCCCeEEEEeC---------
Confidence 456679999999874 25666554433221 1 12332 12222222 3799999977
Q ss_pred CceeEEEECC
Q 013909 196 TSRTFVLDSE 205 (434)
Q Consensus 196 ~~~~~~yd~~ 205 (434)
+.+|+|+..
T Consensus 327 -~~~W~~~~~ 335 (450)
T 1su3_A 327 -NKYWAVQGQ 335 (450)
T ss_dssp -TEEEEEETT
T ss_pred -CEEEEecCC
Confidence 578888753
No 243
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=75.51 E-value=52 Score=30.60 Aligned_cols=208 Identities=15% Similarity=0.081 Sum_probs=104.7
Q ss_pred ceeeccCCCCcEEEcCCCCCCCCceeEEEE--CCEEEEEeccCCCCCceeeEEEEECCCCceEecCC--CCCCCCceeeE
Q 013909 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFD--MPKDMAHSHLG 173 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~--~~~~~~r~~~~ 173 (434)
.+..+++.....+.+.+ ....-.+++.. ++.||+.--. ...++++++.....+.+.. +..| .+
T Consensus 97 ~I~~i~~~~~~~~~~~~--~~~~~~gl~~d~~~~~ly~~D~~------~~~I~r~~~~g~~~~~~~~~~~~~p-----~g 163 (386)
T 3v65_B 97 DIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVT------LDRILRANLNGSNVEEVVSTGLESP-----GG 163 (386)
T ss_dssp CEEEECTTSCCCEEEEC--SCSCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCCEEEEECSSCSCC-----CC
T ss_pred cceeeccCCCcEEEEec--CCCccEEEEEecCCCeEEEEeCC------CCcEEEEecCCCCcEEEEeCCCCCc-----cE
Confidence 45566665554444332 11222333433 5789987321 2358999999877655422 2221 23
Q ss_pred EEE--eCCEEEEEeccCCCCCCCCCceeEEEECCCCceEec--CCCCCCcccceEEE--ECCEEEEEcCCCCCCCCCCcc
Q 013909 174 VVS--DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSI--PPLPSPRYSPATQL--WRGRLHVMGGSKENRHTPGLE 247 (434)
Q Consensus 174 ~~~--~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~--~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~ 247 (434)
+++ .++.||+.-.. ...++++++....-+.+ ..+..|+ .+++ .++.||+.--.. ...++
T Consensus 164 lavd~~~g~lY~~d~~--------~~~I~~~~~dg~~~~~l~~~~l~~P~---giavdp~~g~ly~td~~~----~~~I~ 228 (386)
T 3v65_B 164 LAVDWVHDKLYWTDSG--------TSRIEVANLDGAHRKVLLWQSLEKPR---AIALHPMEGTIYWTDWGN----TPRIE 228 (386)
T ss_dssp EEEETTTTEEEEEETT--------TTEEEECBTTSCSCEEEECSSCSCEE---EEEEETTTTEEEEEECSS----SCEEE
T ss_pred EEEEeCCCeEEEEcCC--------CCeEEEEeCCCCceEEeecCCCCCCc---EEEEEcCCCeEEEeccCC----CCEEE
Confidence 444 47899997431 35788888765543333 2233332 2233 367899873211 12333
Q ss_pred eEEEEeeccccccCceEEccCCCCCCCceeEEE--ECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCC
Q 013909 248 HWSIAVKDGKALEKAWRTEIPIPRGGPHRACFV--FNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEM 324 (434)
Q Consensus 248 ~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~ 324 (434)
+++ +....-+.+..... ....++++ .+++||+.-... +.|+++| ...
T Consensus 229 r~~-------~dG~~~~~~~~~~~-~~PnGlavd~~~~~lY~aD~~~----------------------~~I~~~d~dG~ 278 (386)
T 3v65_B 229 ASS-------MDGSGRRIIADTHL-FWPNGLTIDYAGRRMYWVDAKH----------------------HVIERANLDGS 278 (386)
T ss_dssp EEE-------TTSCSCEEEECSSC-SCEEEEEEEGGGTEEEEEETTT----------------------TEEEEECTTSC
T ss_pred EEe-------CCCCCcEEEEECCC-CCeeeEEEeCCCCEEEEEECCC----------------------CEEEEEeCCCC
Confidence 333 22222122211111 11123444 378999986432 2488888 433
Q ss_pred -CeEEcC-CCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCC
Q 013909 325 -KWKVLP-PMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSL 380 (434)
Q Consensus 325 -~W~~~~-~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~ 380 (434)
.-+.+. .++.| .++++.++.||+..-.+ +.|.++|..+.
T Consensus 279 ~~~~~~~~~~~~P-----~giav~~~~ly~td~~~------------~~V~~~~~~~G 319 (386)
T 3v65_B 279 HRKAVISQGLPHP-----FAITVFEDSLYWTDWHT------------KSINSANKFTG 319 (386)
T ss_dssp SCEEEECSSCSSE-----EEEEEETTEEEEEETTT------------TEEEEEETTTC
T ss_pred eeEEEEECCCCCc-----eEEEEECCEEEEeeCCC------------CeEEEEECCCC
Confidence 222222 22222 34566899999976321 36788884443
No 244
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=75.31 E-value=68 Score=31.80 Aligned_cols=66 Identities=9% Similarity=0.070 Sum_probs=36.0
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~ 207 (434)
+++.++.|+.+ ..+.++|+.+.+....-...........+ +..++..++.++.+ ..+..+|+.+.
T Consensus 250 dg~~l~s~s~D------~~v~lWd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~s~s~d--------~~i~~~~~~~~ 314 (611)
T 1nr0_A 250 DGTKIASASAD------KTIKIWNVATLKVEKTIPVGTRIEDQQLG-IIWTKQALVSISAN--------GFINFVNPELG 314 (611)
T ss_dssp TSSEEEEEETT------SEEEEEETTTTEEEEEEECCSSGGGCEEE-EEECSSCEEEEETT--------CCEEEEETTTT
T ss_pred CCCEEEEEeCC------CeEEEEeCCCCceeeeecCCCCccceeEE-EEEcCCEEEEEeCC--------CcEEEEeCCCC
Confidence 66777777755 24888999887764422222111112222 23355555555533 34667887766
Q ss_pred c
Q 013909 208 K 208 (434)
Q Consensus 208 ~ 208 (434)
+
T Consensus 315 ~ 315 (611)
T 1nr0_A 315 S 315 (611)
T ss_dssp E
T ss_pred C
Confidence 4
No 245
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=74.48 E-value=80 Score=32.23 Aligned_cols=212 Identities=13% Similarity=0.109 Sum_probs=98.9
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCC------CCCCCceeE
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQ------CRGPTSRTF 200 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~------~~~~~~~~~ 200 (434)
+++.++++...+... ...++++|+.+++..... .+. .. ....+.. ++.||+. ..+... .......++
T Consensus 173 DG~~la~~~~~~G~e-~~~i~v~dl~tg~~~~~~-~~~--~~-~~~~~wspD~~l~~~-~~~~~~~~~~~~~~~~~~~v~ 246 (741)
T 1yr2_A 173 DGRLLAYSVQDGGSD-WRTVKFVGVADGKPLADE-LKW--VK-FSGLAWLGNDALLYS-RFAEPKEGQAFQALNYNQTVW 246 (741)
T ss_dssp TSSEEEEEEEETTCS-EEEEEEEETTTCCEEEEE-EEE--EE-SCCCEESTTSEEEEE-ECCCC--------CCCCCEEE
T ss_pred CCCEEEEEEcCCCCc-eEEEEEEECCCCCCCCcc-CCC--ce-eccEEEECCCEEEEE-EecCcccccccccCCCCCEEE
Confidence 666666654432221 245999999999875431 110 01 0122222 3344443 332210 011135688
Q ss_pred EEECCCCce--EecCCCC-CCcccceEE-EECCEEEEEcCCCCCCCCCCcceEEEEeeccccccC--c-eEEccCCCCCC
Q 013909 201 VLDSETRKW--DSIPPLP-SPRYSPATQ-LWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEK--A-WRTEIPIPRGG 273 (434)
Q Consensus 201 ~yd~~t~~W--~~~~~~p-~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~--~-W~~~~~~p~~~ 273 (434)
+++..+.+- ..+...+ .+....... .-+++..++...........+..+++ .+. . |+.+.+-....
T Consensus 247 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~-------~~~~~~~~~~l~~~~~~~ 319 (741)
T 1yr2_A 247 LHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARV-------TNGKIGPVTALIPDLKAQ 319 (741)
T ss_dssp EEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEE-------ETTEECCCEEEECSSSSC
T ss_pred EEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEEC-------CCCCCcccEEecCCCCce
Confidence 888876642 2222222 122222222 33554444333222111233344443 233 5 77665433222
Q ss_pred CceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CC--CCeEEcCCCCCCCCccceeEEEECCEE
Q 013909 274 PHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DE--MKWKVLPPMPKPNSHIECAWVIVNNSI 350 (434)
Q Consensus 274 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~--~~W~~~~~~p~~r~~~~~~~~~~~~~i 350 (434)
. ..+...++.||+..-.+.. ...++.+| .+ ..|+.+-+-.. ... ..+...++++
T Consensus 320 ~-~~~~~dg~~l~~~s~~~~~-------------------~~~l~~~d~~~~~~~~~~l~~~~~--~~l-~~~~~~~~~l 376 (741)
T 1yr2_A 320 W-DFVDGVGDQLWFVSGDGAP-------------------LKKIVRVDLSGSTPRFDTVVPESK--DNL-ESVGIAGNRL 376 (741)
T ss_dssp E-EEEEEETTEEEEEECTTCT-------------------TCEEEEEECSSSSCEEEEEECCCS--SEE-EEEEEEBTEE
T ss_pred E-EEEeccCCEEEEEECCCCC-------------------CCEEEEEeCCCCccccEEEecCCC--CeE-EEEEEECCEE
Confidence 2 1223457777777543321 23588888 54 47888743221 111 1234558888
Q ss_pred EEEcCcCCCCCCccceeeeccEEEEECCCCceEEe
Q 013909 351 IITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVI 385 (434)
Q Consensus 351 ~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 385 (434)
++....++ ...++++++....-..+
T Consensus 377 v~~~~~dg----------~~~l~~~~~~g~~~~~l 401 (741)
T 1yr2_A 377 FASYIHDA----------KSQVLAFDLDGKPAGAV 401 (741)
T ss_dssp EEEEEETT----------EEEEEEEETTSCEEEEC
T ss_pred EEEEEECC----------EEEEEEEeCCCCceeec
Confidence 87766543 23688888765544443
No 246
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=74.01 E-value=30 Score=32.48 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=13.8
Q ss_pred EEEEEcCcCCCCCCccceeeeccEEEEECCC
Q 013909 349 SIIITGGTTEKHPMTKRMILVGEVFQFHLDS 379 (434)
Q Consensus 349 ~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~ 379 (434)
.+++.|+.++ .+.+||+.+
T Consensus 291 ~~l~tg~~dg------------~v~vwd~~~ 309 (430)
T 2xyi_A 291 FILATGSADK------------TVALWDLRN 309 (430)
T ss_dssp TEEEEEETTS------------EEEEEETTC
T ss_pred CEEEEEeCCC------------eEEEEeCCC
Confidence 4788887652 688888876
No 247
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=73.02 E-value=93 Score=32.33 Aligned_cols=170 Identities=11% Similarity=0.041 Sum_probs=83.6
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCC----ceEec-C-CCCCCCCceeeEEEE--eCCEEEEEeccCCCCCCCCCcee
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDN----KWVDR-F-DMPKDMAHSHLGVVS--DGRYIYIVSGQYGPQCRGPTSRT 199 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~----~W~~~-~-~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~ 199 (434)
+++||+.-.. ...++++++... ....+ . .+..| .++++ .+++||+.-. ....+
T Consensus 435 ~~~lY~sD~~------~~~I~~~~l~g~~~~~~~~~vi~~~l~~P-----~GLAvD~~~~~LY~tD~--------~~~~I 495 (791)
T 3m0c_C 435 SNRIYWSDLS------QRMICSTQLDRAHGVSSYDTVISRDIQAP-----DGLAVDWIHSNIYWTDS--------VLGTV 495 (791)
T ss_dssp TTEEEEEETT------TTEEEEEEC--------CEEEECSSCSCC-----CEEEEETTTTEEEEEET--------TTTEE
T ss_pred CCeeEEeecc------ceeEEEEeccCCCCCcceeEEEecCCCCc-----ceeeeeecCCcEEEEec--------CCCeE
Confidence 5788887432 134777887652 22322 2 23222 24555 4779999732 14678
Q ss_pred EEEECCCCceEecC--CCCCCcccceEEE--ECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCc
Q 013909 200 FVLDSETRKWDSIP--PLPSPRYSPATQL--WRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPH 275 (434)
Q Consensus 200 ~~yd~~t~~W~~~~--~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~ 275 (434)
+++|+....-+.+. .+..|+ .+++ .++.||+.--.. ...+++.+ .....-+.+..... ...
T Consensus 496 ~v~~ldG~~~~~l~~~~l~~P~---gIaVDp~~g~LYwtD~g~----~~~I~~~~-------~dG~~~~~lv~~~l-~~P 560 (791)
T 3m0c_C 496 SVADTKGVKRKTLFRENGSKPR---AIVVDPVHGFMYWTDWGT----PAKIKKGG-------LNGVDIYSLVTENI-QWP 560 (791)
T ss_dssp EEEETTSSSEEEEEECTTCCEE---EEEEETTTTEEEEEECSS----SCEEEEEE-------TTSCCEEEEECSSC-SCE
T ss_pred EEEeCCCCeEEEEEeCCCCCcc---eEEEecCCCCEEEecCCC----CCeEEEEe-------cCCCceEEEEeCCC-CCc
Confidence 99998866554442 333333 2333 368899874111 12233333 11222122211110 111
Q ss_pred eeEEE--ECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCC-CeEEcCCCCCCCCccceeEEEECCEEE
Q 013909 276 RACFV--FNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEM-KWKVLPPMPKPNSHIECAWVIVNNSII 351 (434)
Q Consensus 276 ~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~-~W~~~~~~p~~r~~~~~~~~~~~~~i~ 351 (434)
.++++ .+++||+.-... +.|+.+| ... ..+.+.. . ....+..++++.+++||
T Consensus 561 ~GLavD~~~~~LYwaD~~~----------------------~~I~~~d~dG~~~~~v~~~-~-~~l~~P~glav~~~~lY 616 (791)
T 3m0c_C 561 NGITLDLLSGRLYWVDSKL----------------------HSISSIDVNGGNRKTILED-E-KRLAHPFSLAVFEDKVF 616 (791)
T ss_dssp EEEEEETTTTEEEEEETTT----------------------TEEEEEETTSCSCEEEEEC-T-TTTSSEEEEEEETTEEE
T ss_pred eEEEEecCCCeEEEEeCCC----------------------CcEEEEecCCCceEEEecC-C-CccCCCCEEEEeCCEEE
Confidence 13333 378999985432 2477777 333 3333321 0 11122346678899999
Q ss_pred EEcC
Q 013909 352 ITGG 355 (434)
Q Consensus 352 v~GG 355 (434)
+.--
T Consensus 617 wtD~ 620 (791)
T 3m0c_C 617 WTDI 620 (791)
T ss_dssp EEET
T ss_pred EEEC
Confidence 9864
No 248
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=72.66 E-value=92 Score=32.12 Aligned_cols=201 Identities=16% Similarity=0.208 Sum_probs=98.1
Q ss_pred ceeeccCCCCcEEEcCC-C-----CC---CCCceeEEEE----CCEEEEEeccCCCCCceeeEEEEECCCCceEecCC-C
Q 013909 98 TFADLPAPDLEWEQMPS-A-----PV---PRLDGAAIQI----KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFD-M 163 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~-~-----p~---~R~~~~~~~~----~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~-~ 163 (434)
.+++..-...+|+++.. + +. .......+.+ .+.+|+..|..........+++=+=.-.+|+++.. .
T Consensus 44 gv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~~~~~~~~~i~~S~DgG~TW~~~~~~~ 123 (763)
T 3a0f_A 44 GTYRWNAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDYVQWDPWAAFLVSDDRGKTFKQYRSPV 123 (763)
T ss_dssp CEEEEETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSCTTTCSCCEEEEESSTTSSCEEEECSS
T ss_pred cEEEECCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecccccCCCCceEEEECCCCCCceeccCCc
Confidence 45565556679999876 4 21 1222233333 36888876531111111234444444568998752 1
Q ss_pred CCC---CCce-eeEEEEe---CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCc---ccceEEEE----CC
Q 013909 164 PKD---MAHS-HLGVVSD---GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPR---YSPATQLW----RG 229 (434)
Q Consensus 164 ~~~---~~r~-~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r---~~~~~~~~----~~ 229 (434)
+.+ ..|. ...+++. .+.+|+.+- ...+++=+=.-.+|+++..+|... .....+.+ .+
T Consensus 124 ~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~---------~~~l~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~ 194 (763)
T 3a0f_A 124 PMGANDMGRNGGERLAVNPHWTDELWFGSR---------TQGLWRSTDRAQTWSRMNQLPDSSTYGIGIISVIFDPKNVG 194 (763)
T ss_dssp CCCTTSTTTTSBCCEEECTTSTTCEEEECS---------SSCEEEESSTTSSCEECTTSCCCSCTTTCEEEEEECSSSTT
T ss_pred ccCccccCccccceEEECCCCCCEEEEEeC---------CCcEEEECCCCcCccccccCcccCCCccceEEEEECCCCCC
Confidence 110 1121 1234543 367887531 123443333346899998776532 22222232 24
Q ss_pred EEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCC--------------------CCceeEEEE-CCEEEEE
Q 013909 230 RLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRG--------------------GPHRACFVF-NDRLFVV 288 (434)
Q Consensus 230 ~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~--------------------~~~~~~~~~-~~~iyv~ 288 (434)
.||+.....+ .+|... -...+|+.+...|.. ...+.++.. ++.+|+.
T Consensus 195 ~~~~~~~~~g-------~v~~S~-----DgG~tW~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~l~~~ 262 (763)
T 3a0f_A 195 TAYVASHAVG-------GLWVTW-----DGGANWSQVGGQPTQWSDWTKSIVAASGTAIQSSGPLPIKIALGKNGRLYIT 262 (763)
T ss_dssp CEEEEESSTT-------CEEEES-----SSSSSCEECTTCCCSCCHHHHHHHHHHCCCCSSSSCEEEEEEECTTSCEEEE
T ss_pred EEEEEEeCCC-------eEEEEC-----CCCCCccccCCCccccccccccccccccccccCCCCcceeEEECCCCcEEEE
Confidence 6777643221 234321 235689987655521 111222222 6788887
Q ss_pred cCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCC
Q 013909 289 GGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMP 333 (434)
Q Consensus 289 GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p 333 (434)
....... .......+++.+ ...+|+.+.+.|
T Consensus 263 ~~~~~~~--------------~~~~~g~v~rS~D~G~tW~~~~~~~ 294 (763)
T 3a0f_A 263 YSDAPGP--------------WGVLYGEVWSYDPTNGNWKHITPSR 294 (763)
T ss_dssp EESSCSS--------------SCCCCEEEEEEETTTTEEEECCTTS
T ss_pred eccCCCC--------------CCCcceeEEEEeCCCCceEECCCCC
Confidence 4211000 000123578776 677999987544
No 249
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=72.38 E-value=45 Score=28.47 Aligned_cols=58 Identities=17% Similarity=0.291 Sum_probs=34.0
Q ss_pred ECCEEEEEeccCCCCCceeeEEEEECCCCce--Eec----CCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeE
Q 013909 127 IKNLFYVFAGYGSLDYVHSHVDVYNFTDNKW--VDR----FDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTF 200 (434)
Q Consensus 127 ~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W--~~~----~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~ 200 (434)
.++++|+|=|. ..|+++.....+ ..| +.||. .-. ++...++++|+|-| +.+|
T Consensus 27 ~~g~~yfFkg~--------~~Wr~~~~~~~~~p~~Is~~wpgLP~---~ID-AA~~~~~~~yfFkG----------~~yw 84 (219)
T 1hxn_A 27 NHGATYVFSGS--------HYWRLDTNRDGWHSWPIAHQWPQGPS---TVD-AAFSWEDKLYLIQD----------TKVY 84 (219)
T ss_dssp TTSCEEEEETT--------EEEESSSSSCTTCCEEGGGTCTTSCS---SCS-EEEEETTEEEEEET----------TEEE
T ss_pred CCCcEEEEeCC--------EEEEEcCCCCCCCceEhhhhccCCCC---Ccc-EEEEECCcEEEecC----------CEEE
Confidence 47889999763 256666543221 112 12332 222 23334899999977 5789
Q ss_pred EEECCC
Q 013909 201 VLDSET 206 (434)
Q Consensus 201 ~yd~~t 206 (434)
+|+..+
T Consensus 85 ~~~~~~ 90 (219)
T 1hxn_A 85 VFLTKG 90 (219)
T ss_dssp EEECSS
T ss_pred EEeCCC
Confidence 998754
No 250
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=71.38 E-value=56 Score=29.07 Aligned_cols=63 Identities=8% Similarity=0.073 Sum_probs=34.4
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEe-cCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVD-RFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~ 205 (434)
++..++.|+.++ .+.+||+.+++-.. +..-.. .-.+++.. ++.+++.|+.+ ..+.+||..
T Consensus 76 dg~~l~s~s~D~------~v~~wd~~~~~~~~~~~~h~~----~v~~~~~~~~~~~l~s~s~D--------~~i~vwd~~ 137 (319)
T 3frx_A 76 DGAYALSASWDK------TLRLWDVATGETYQRFVGHKS----DVMSVDIDKKASMIISGSRD--------KTIKVWTIK 137 (319)
T ss_dssp TSSEEEEEETTS------EEEEEETTTTEEEEEEECCSS----CEEEEEECTTSCEEEEEETT--------SCEEEEETT
T ss_pred CCCEEEEEeCCC------EEEEEECCCCCeeEEEccCCC----cEEEEEEcCCCCEEEEEeCC--------CeEEEEECC
Confidence 566777777552 48889998876322 211111 11223332 55677777743 346677776
Q ss_pred CCc
Q 013909 206 TRK 208 (434)
Q Consensus 206 t~~ 208 (434)
...
T Consensus 138 ~~~ 140 (319)
T 3frx_A 138 GQC 140 (319)
T ss_dssp SCE
T ss_pred CCe
Confidence 543
No 251
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=71.04 E-value=80 Score=30.88 Aligned_cols=92 Identities=12% Similarity=-0.000 Sum_probs=43.4
Q ss_pred EEEEEeccCCCCCceeeEEEEEC--CCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCC
Q 013909 130 LFYVFAGYGSLDYVHSHVDVYNF--TDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (434)
Q Consensus 130 ~iyv~GG~~~~~~~~~~v~~yd~--~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~ 207 (434)
++...+...+... ...+|..+. ....- .+...+. ....+....++.++++.+.. .....||+.+.
T Consensus 76 ~~l~~~~~~~g~~-~~~l~~~~~~~~g~~~-~l~~~~~---~~~~~~s~dg~~~~~~s~~~--------~~~~l~d~~~g 142 (582)
T 3o4h_A 76 RVILVRDVSKGAE-QHALFKVNTSRPGEEQ-RLEAVKP---MRILSGVDTGEAVVFTGATE--------DRVALYALDGG 142 (582)
T ss_dssp EEEEEEECSTTSC-CEEEEEEETTSTTCCE-ECTTSCS---BEEEEEEECSSCEEEEEECS--------SCEEEEEEETT
T ss_pred eEEEEeccCCCCc-ceEEEEEeccCCCccc-cccCCCC---ceeeeeCCCCCeEEEEecCC--------CCceEEEccCC
Confidence 5555444321121 234788887 44332 3433322 22334444455555554422 22347788888
Q ss_pred ceEecCCCCCCcccceEEEECCEEEEEcCC
Q 013909 208 KWDSIPPLPSPRYSPATQLWRGRLHVMGGS 237 (434)
Q Consensus 208 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 237 (434)
+-+.+...+. ...+..-+++..+++..
T Consensus 143 ~~~~l~~~~~---~~~~~spDG~~la~~~~ 169 (582)
T 3o4h_A 143 GLRELARLPG---FGFVSDIRGDLIAGLGF 169 (582)
T ss_dssp EEEEEEEESS---CEEEEEEETTEEEEEEE
T ss_pred cEEEeecCCC---ceEEECCCCCEEEEEEE
Confidence 7766643332 22222345655555443
No 252
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=70.80 E-value=57 Score=33.43 Aligned_cols=130 Identities=8% Similarity=-0.049 Sum_probs=63.3
Q ss_pred eeecccccCCceEEecCCCCCccccceeeeEEEccCCcchhhhhccceeeccCCCCcEEEcC--CCCCCCCceeEEEECC
Q 013909 52 VASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMP--SAPVPRLDGAAIQIKN 129 (434)
Q Consensus 52 ~~~~yd~~~~~W~~~~~~~~~r~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~p~~R~~~~~~~~~~ 129 (434)
-+.+||++++++..+..-.... ...-.+++........-....-+..|++.+++++... .+|. ..-.+++.-++
T Consensus 494 Gl~~~d~~~~~~~~~~~~~~~~---~~~~~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~~~~gl~~-~~i~~i~~~~g 569 (758)
T 3ott_A 494 GIDKINPRTREVTKLFADELTG---EKSPNYLLCDEDGLLWVGFHGGVMRINPKDESQQSISFGSFSN-NEILSMTCVKN 569 (758)
T ss_dssp SEEEEETTTTEEEEECTTTSCG---GGCEEEEEECTTSCEEEEETTEEEEECC--CCCCBCCCCC----CCEEEEEEETT
T ss_pred CcEEEeCCCCceEEecCCCcCC---CcccceEEECCCCCEEEEecCceEEEecCCCceEEecccCCCc-cceEEEEECCC
Confidence 4678899888887764211110 0111122222211111111235788888887765543 2332 12233444478
Q ss_pred EEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEE-eCCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 130 LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 130 ~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
.|++.... -+.+|||.+.+..... ++. .....++.. -++.|| |||. +-+..|||..
T Consensus 570 ~lWi~t~~--------Gl~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~G~l~-fG~~---------~Gl~~f~p~~ 626 (758)
T 3ott_A 570 SIWVSTTN--------GLWIIDRKTMDARQQN-MTN--KRFTSLLFDPKEDCVY-LGGA---------DGFGISHSNL 626 (758)
T ss_dssp EEEEEESS--------CEEEEETTTCCEEEC---CC--CCCSEEEEETTTTEEE-EECB---------SEEEEEEC--
T ss_pred CEEEECCC--------CeEEEcCCCceeEEec-CCC--CceeeeEEECCCCcEE-EecC---------CceEEEChhh
Confidence 88886521 2889999998877542 222 122222222 267776 5663 4567889874
No 253
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=70.12 E-value=18 Score=36.35 Aligned_cols=125 Identities=15% Similarity=0.186 Sum_probs=64.7
Q ss_pred ceEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCC-----C---CCceeEEE--ECCE----EEE
Q 013909 222 PATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPR-----G---GPHRACFV--FNDR----LFV 287 (434)
Q Consensus 222 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~-----~---~~~~~~~~--~~~~----iyv 287 (434)
.+-++.+++||+....+ ..+..+|. . +.-...|+.....+. . ....+.++ .+++ ||+
T Consensus 56 ~tP~v~~g~vyv~~~~~-----~~v~AlD~--~--~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v 126 (599)
T 1w6s_A 56 GAPLVVDGKMYIHTSFP-----NNTFALGL--D--DPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILK 126 (599)
T ss_dssp SCCEEETTEEEEECSTT-----TCEEEEET--T--CTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEE
T ss_pred eccEEECCEEEEEeCCC-----CEEEEEeC--C--CCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEE
Confidence 34456799999986521 22333331 0 134456887543321 0 11123445 5777 877
Q ss_pred EcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCC--CeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCcc
Q 013909 288 VGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEM--KWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTK 364 (434)
Q Consensus 288 ~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~--~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~ 364 (434)
... ++ .++++| .+. .|+.-..-+........+-++.+++||+-.+..+..
T Consensus 127 ~t~-dg----------------------~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g---- 179 (599)
T 1w6s_A 127 TQL-DG----------------------NVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELG---- 179 (599)
T ss_dssp ECT-TS----------------------EEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGT----
T ss_pred EcC-CC----------------------EEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccC----
Confidence 532 21 489999 444 698632211111122223367788887644311100
Q ss_pred ceeeeccEEEEECCCCc--eEEe
Q 013909 365 RMILVGEVFQFHLDSLT--WSVI 385 (434)
Q Consensus 365 ~~~~~~~v~~yd~~~~~--W~~~ 385 (434)
.-..++.||.++.+ |+.-
T Consensus 180 ---~~g~v~A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 180 ---VRGYLTAYDVKTGEQVWRAY 199 (599)
T ss_dssp ---CCCEEEEEETTTCCEEEEEE
T ss_pred ---CCCeEEEEECCCCcEEEEEc
Confidence 12378999998866 8764
No 254
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=69.71 E-value=43 Score=34.38 Aligned_cols=118 Identities=12% Similarity=0.117 Sum_probs=59.6
Q ss_pred ceeeccCCCCcEEEcCCCCCC-CCceeEEEE--CCEEEEEeccCCCCCceeeEEEEECCCCceEecC--CCCCCCCceee
Q 013909 98 TFADLPAPDLEWEQMPSAPVP-RLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRF--DMPKDMAHSHL 172 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~-R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~--~~~~~~~r~~~ 172 (434)
-+.+||+.+++++.+..-... .....+... ++.|++.. .. -+.+||+.+++++... .++. ..-.
T Consensus 494 Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~~-------Gl~~~~~~~~~~~~~~~~gl~~---~~i~ 562 (758)
T 3ott_A 494 GIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-HG-------GVMRINPKDESQQSISFGSFSN---NEIL 562 (758)
T ss_dssp SEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-TT-------EEEEECC--CCCCBCCCCC------CCEE
T ss_pred CcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-cC-------ceEEEecCCCceEEecccCCCc---cceE
Confidence 455666666666655321111 111112222 56788643 21 2889999998887653 2332 2234
Q ss_pred EEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEE-CCEEEEEcCCC
Q 013909 173 GVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW-RGRLHVMGGSK 238 (434)
Q Consensus 173 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~ 238 (434)
+++..++.|++... +-+.+|||.+.+.+... +|......++... ++.|| |||..
T Consensus 563 ~i~~~~g~lWi~t~----------~Gl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~l~-fG~~~ 617 (758)
T 3ott_A 563 SMTCVKNSIWVSTT----------NGLWIIDRKTMDARQQN-MTNKRFTSLLFDPKEDCVY-LGGAD 617 (758)
T ss_dssp EEEEETTEEEEEES----------SCEEEEETTTCCEEEC---CCCCCSEEEEETTTTEEE-EECBS
T ss_pred EEEECCCCEEEECC----------CCeEEEcCCCceeEEec-CCCCceeeeEEECCCCcEE-EecCC
Confidence 44556888888542 45788999998876643 3333222222222 45555 45543
No 255
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=69.69 E-value=51 Score=33.30 Aligned_cols=13 Identities=15% Similarity=0.166 Sum_probs=9.5
Q ss_pred cEEEEECCCCceE
Q 013909 371 EVFQFHLDSLTWS 383 (434)
Q Consensus 371 ~v~~yd~~~~~W~ 383 (434)
.+.+||+.+.+-.
T Consensus 542 ~v~vwd~~~~~~~ 554 (694)
T 3dm0_A 542 TVKVWNLSNCKLR 554 (694)
T ss_dssp CEEEEETTTCCEE
T ss_pred eEEEEECCCCcEE
Confidence 5888898876643
No 256
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=69.65 E-value=45 Score=33.65 Aligned_cols=76 Identities=4% Similarity=-0.175 Sum_probs=38.5
Q ss_pred CCEEEEEeccCCCC---CceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEEC
Q 013909 128 KNLFYVFAGYGSLD---YVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDS 204 (434)
Q Consensus 128 ~~~iyv~GG~~~~~---~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~ 204 (434)
+++.++++..+... .....++++|..+.+-..+........+.......-+++..+++.. .+++++|.
T Consensus 71 Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~---------~~i~~~~~ 141 (723)
T 1xfd_A 71 DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE---------NNIYYCAH 141 (723)
T ss_dssp TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET---------TEEEEESS
T ss_pred CCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC---------CeEEEEEC
Confidence 66666666543221 1235699999999876656543221011111111124443444331 36777887
Q ss_pred CCCceEec
Q 013909 205 ETRKWDSI 212 (434)
Q Consensus 205 ~t~~W~~~ 212 (434)
.+.+-..+
T Consensus 142 ~~g~~~~~ 149 (723)
T 1xfd_A 142 VGKQAIRV 149 (723)
T ss_dssp SSSCCEEE
T ss_pred CCCceEEE
Confidence 77665544
No 257
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=69.52 E-value=32 Score=32.29 Aligned_cols=103 Identities=11% Similarity=0.002 Sum_probs=54.7
Q ss_pred cceeeccCCCCcEEEcCCCCCCCCceeEEEE--CCEEEEEeccCC---CCCceeeEEEEECCCCceEecCCCCC-CC---
Q 013909 97 ATFADLPAPDLEWEQMPSAPVPRLDGAAIQI--KNLFYVFAGYGS---LDYVHSHVDVYNFTDNKWVDRFDMPK-DM--- 167 (434)
Q Consensus 97 ~~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~---~~~~~~~v~~yd~~t~~W~~~~~~~~-~~--- 167 (434)
+.+..+|..+++- +..++.....+ ++.. +..+|+..-... .+...+.+.++|+.+.+-..--+++. ..
T Consensus 59 ~~V~ViD~~t~~v--~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~ 135 (386)
T 3sjl_D 59 TQQFVIDGEAGRV--IGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV 135 (386)
T ss_dssp EEEEEEETTTTEE--EEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred CEEEEEECCCCeE--EEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcccccc
Confidence 3788888877643 33334333334 3333 446888753211 01124569999999987432111111 00
Q ss_pred CceeeEEEE--eCCEEEEEeccCCCCCCCCCceeEEEECCCCce
Q 013909 168 AHSHLGVVS--DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKW 209 (434)
Q Consensus 168 ~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W 209 (434)
...-+.+++ .+.++|+... ...+.+.+.|..+++-
T Consensus 136 g~~P~~~a~spDGk~lyVan~-------~~~~~VsVID~~t~~v 172 (386)
T 3sjl_D 136 GTYPWMTSLTPDGKTLLFYQF-------SPAPAVGVVDLEGKAF 172 (386)
T ss_dssp SCCGGGEEECTTSSEEEEEEC-------SSSCEEEEEETTTTEE
T ss_pred CCCCceEEEcCCCCEEEEEEc-------CCCCeEEEEECCCCcE
Confidence 011222333 4668898632 1136789999998864
No 258
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=69.46 E-value=1.1e+02 Score=31.49 Aligned_cols=89 Identities=17% Similarity=0.197 Sum_probs=52.7
Q ss_pred EEEEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCC-CCCceeEEEECCCCceEecCCCCCC----cc
Q 013909 147 VDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCR-GPTSRTFVLDSETRKWDSIPPLPSP----RY 220 (434)
Q Consensus 147 v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~-~~~~~~~~yd~~t~~W~~~~~~p~~----r~ 220 (434)
+++=.=.-.+|+.+..+|. ....+.+++. ++.+|+..+-...... .....+++++-...+|+.+.+.|.. +.
T Consensus 224 v~~S~DgG~tW~~~~~~p~--~~~~~~~~~~~~~~l~~~~~d~~g~y~~~~~g~v~~s~d~G~tW~~i~~~~~~~~~~~~ 301 (737)
T 2cn3_A 224 IYRSTDGGVTWKAVPGQPK--GLLPHHGVLASNGMLYITYGDTCGPYDGNGKGQVWKFNTRTGEWIDITPIPYSSSDNRF 301 (737)
T ss_dssp EEEESSTTSCCEECTTCCC--SSEEEEEEECTTSEEEEEEESSCCSSCCSCCEEEEEEETTTCCEEECCSSCTTSTTCCS
T ss_pred EEEEcCCCCceEECCCCCC--cccceEEEECCCCeEEEEecCCCCccccccCceEEEEeCCCCCEEEccCCCCCCccccc
Confidence 4433333457999886654 3333444443 7889987542211000 1246799999999999999876643 33
Q ss_pred cceEEEE----CCEEEEEcCC
Q 013909 221 SPATQLW----RGRLHVMGGS 237 (434)
Q Consensus 221 ~~~~~~~----~~~iyv~GG~ 237 (434)
+.+.+.+ .+.||+.+..
T Consensus 302 ~~~~i~v~p~~~~~ly~~~~~ 322 (737)
T 2cn3_A 302 CFAGLAVDRQNPDIIMVTSMN 322 (737)
T ss_dssp EEEEEEECTTCTTCEEEEEEC
T ss_pred ccccEEEcCCCCCEEEEEecc
Confidence 3443333 2578887643
No 259
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=69.13 E-value=1.3 Score=41.53 Aligned_cols=51 Identities=6% Similarity=0.048 Sum_probs=25.8
Q ss_pred EEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCc--eEecCCCCCCcccceEEEECCEEEEEcCC
Q 013909 174 VVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK--WDSIPPLPSPRYSPATQLWRGRLHVMGGS 237 (434)
Q Consensus 174 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 237 (434)
-++.++.||+.+. ...++.+|..+.+ |+.-. ... ..+.+..++++|+.+..
T Consensus 5 P~v~~~~v~~gs~---------dg~v~a~d~~tG~~~W~~~~--~~~--~s~p~~~~g~~~v~~s~ 57 (369)
T 2hz6_A 5 VTLPETLLFVSTL---------DGSLHAVSKRTGSIKWTLKE--DPV--LQVPTHVEEPAFLPDPN 57 (369)
T ss_dssp ---CTTEEEEEET---------TSEEEEEETTTCCEEEEEEC--CCS--CCCC-----CCEEECTT
T ss_pred CeeeCCEEEEEcC---------CCEEEEEECCCCCEEEEecC--CCc--eecceEcCCCEEEEeCC
Confidence 3556777877543 2468899988764 76543 111 12223456778887643
No 260
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=68.67 E-value=20 Score=30.97 Aligned_cols=21 Identities=5% Similarity=0.066 Sum_probs=16.6
Q ss_pred ECCEEEEEcCcCCCCCCccceeeeccEEEEECCCC
Q 013909 346 VNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSL 380 (434)
Q Consensus 346 ~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~ 380 (434)
.++++|+|=|. ..|+||..+.
T Consensus 182 ~~g~~YfFkg~--------------~Ywr~d~~~~ 202 (227)
T 3lp9_A 182 KTNEVYFFKDD--------------HYARVKVTPX 202 (227)
T ss_dssp STTEEEEEETT--------------EEEEEECCSS
T ss_pred CCceEEEEECC--------------EEEEEECCcc
Confidence 46899999883 5899998776
No 261
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=68.34 E-value=65 Score=28.67 Aligned_cols=81 Identities=15% Similarity=0.120 Sum_probs=42.8
Q ss_pred eEEEEECCCCceEecCCCCC----------------CCCceeeEEEEe--CCEEEEEeccCCCCCCCCCceeEEEECCCC
Q 013909 146 HVDVYNFTDNKWVDRFDMPK----------------DMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (434)
Q Consensus 146 ~v~~yd~~t~~W~~~~~~~~----------------~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~ 207 (434)
.+++||+.+++++....... +....-+++++. ++.|||.-. ...+.+||+.+.
T Consensus 41 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~---------~~~i~~~d~~~g 111 (322)
T 2fp8_A 41 RVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC---------YYHLSVVGSEGG 111 (322)
T ss_dssp EEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET---------TTEEEEECTTCE
T ss_pred eEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC---------CCCEEEEeCCCC
Confidence 48889988877654421100 000123456665 689999732 134788998876
Q ss_pred ceEecCCCCCC---cccceEEE-E-CCEEEEEc
Q 013909 208 KWDSIPPLPSP---RYSPATQL-W-RGRLHVMG 235 (434)
Q Consensus 208 ~W~~~~~~p~~---r~~~~~~~-~-~~~iyv~G 235 (434)
+.+.+...... ..-..++. - ++.||+.-
T Consensus 112 ~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d 144 (322)
T 2fp8_A 112 HATQLATSVDGVPFKWLYAVTVDQRTGIVYFTD 144 (322)
T ss_dssp ECEEEESEETTEECSCEEEEEECTTTCCEEEEE
T ss_pred EEEEecccCCCCcccccceEEEecCCCEEEEEC
Confidence 65554321111 11112333 2 57899874
No 262
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=67.34 E-value=42 Score=28.80 Aligned_cols=51 Identities=16% Similarity=0.122 Sum_probs=31.5
Q ss_pred ECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEe----c-cCCC------ceeeeeeEE--ECCEEEEEccc
Q 013909 346 VNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVI----G-KLPY------RIKTTLTGF--WDGWLYFTSGQ 410 (434)
Q Consensus 346 ~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~----~-~lp~------~r~~~~~~~--~~~~l~v~GG~ 410 (434)
.++++|+|-|. ..|+||..+++...- . ..|. +..--++.. .++++|++-|.
T Consensus 126 ~~gk~yfFkG~--------------~yw~~d~~~~~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG~ 189 (225)
T 3oyo_A 126 KGKEVYLFKGN--------------KYVRIAYDSKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKGQ 189 (225)
T ss_dssp STTEEEEEETT--------------EEEEEETTTTEEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEETT
T ss_pred CCCcEEEEeCC--------------eEEEEECCCCeecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEECC
Confidence 37899999873 589999777665431 1 1221 122233334 37899999874
No 263
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=67.22 E-value=61 Score=27.89 Aligned_cols=202 Identities=9% Similarity=-0.009 Sum_probs=96.7
Q ss_pred eEEEEECCCCceEecCC---CCCCCCceeeEEEEe--CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcc
Q 013909 146 HVDVYNFTDNKWVDRFD---MPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRY 220 (434)
Q Consensus 146 ~v~~yd~~t~~W~~~~~---~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~ 220 (434)
.+.++|+.....+.+.. +..| ...-+++++. ++.||+.-.. ...+.+||+....-..+.+.... .
T Consensus 11 ~I~~~~~~g~~~~~~~~~~~~~~~-~~~~~gi~~d~~~~~ly~~d~~--------~~~I~~~~~~g~~~~~~~~~~~~-~ 80 (267)
T 1npe_A 11 KIERLPLERNTMKKTEAKAFLHIP-AKVIIGLAFDCVDKVVYWTDIS--------EPSIGRASLHGGEPTTIIRQDLG-S 80 (267)
T ss_dssp EEEEEEESSSCBCGGGCEEEEEEE-EEEEEEEEEETTTTEEEEEETT--------TTEEEEEESSSCCCEEEECTTCC-C
T ss_pred eEEEEEecCcccccccceeeecCC-CCcEEEEEEecCCCEEEEEECC--------CCEEEEEecCCCCcEEEEECCCC-C
Confidence 57888887654332211 1111 1233555654 5799987431 36789999987643333211111 1
Q ss_pred cceEEEE--CCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEE--CCEEEEEcCCCCCCC
Q 013909 221 SPATQLW--RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVF--NDRLFVVGGQEGDFM 296 (434)
Q Consensus 221 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~--~~~iyv~GG~~~~~~ 296 (434)
-+.++.. +++||+.-... ..+..++ +....-+.+.+... .....++.. ++.||+......
T Consensus 81 p~~ia~d~~~~~lyv~d~~~-----~~I~~~~-------~~g~~~~~~~~~~~-~~P~~i~vd~~~g~lyv~~~~~~--- 144 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQL-----DRIEVAK-------MDGTQRRVLFDTGL-VNPRGIVTDPVRGNLYWTDWNRD--- 144 (267)
T ss_dssp EEEEEEETTTTEEEEEETTT-----TEEEEEE-------TTSCSCEEEECSSC-SSEEEEEEETTTTEEEEEECCSS---
T ss_pred ccEEEEEecCCeEEEEECCC-----CEEEEEE-------cCCCCEEEEEECCC-CCccEEEEeeCCCEEEEEECCCC---
Confidence 1233333 57999985322 2333333 22222122221111 111233333 689999864311
Q ss_pred CCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEEE--CCEEEEEcCcCCCCCCccceeeeccEE
Q 013909 297 AKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIV--NNSIIITGGTTEKHPMTKRMILVGEVF 373 (434)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~v~ 373 (434)
...+++++ ....-+.+..... .. ...+++. +++||+.-... +.++
T Consensus 145 -----------------~~~I~~~~~dg~~~~~~~~~~~--~~-P~gia~d~~~~~lyv~d~~~------------~~I~ 192 (267)
T 1npe_A 145 -----------------NPKIETSHMDGTNRRILAQDNL--GL-PNGLTFDAFSSQLCWVDAGT------------HRAE 192 (267)
T ss_dssp -----------------SCEEEEEETTSCCCEEEECTTC--SC-EEEEEEETTTTEEEEEETTT------------TEEE
T ss_pred -----------------CcEEEEEecCCCCcEEEEECCC--CC-CcEEEEcCCCCEEEEEECCC------------CEEE
Confidence 12477776 3332222221111 11 1233443 56899876422 3689
Q ss_pred EEECCCCceEEe-ccCCCceeeeeeEEECCEEEEEc
Q 013909 374 QFHLDSLTWSVI-GKLPYRIKTTLTGFWDGWLYFTS 408 (434)
Q Consensus 374 ~yd~~~~~W~~~-~~lp~~r~~~~~~~~~~~l~v~G 408 (434)
++|++...-..+ ..+..| .+++.-++.||+.-
T Consensus 193 ~~~~~g~~~~~~~~~~~~P---~gi~~d~~~lyva~ 225 (267)
T 1npe_A 193 CLNPAQPGRRKVLEGLQYP---FAVTSYGKNLYYTD 225 (267)
T ss_dssp EEETTEEEEEEEEECCCSE---EEEEEETTEEEEEE
T ss_pred EEecCCCceEEEecCCCCc---eEEEEeCCEEEEEE
Confidence 999876543332 223233 34455578888864
No 264
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=66.41 E-value=86 Score=29.35 Aligned_cols=91 Identities=19% Similarity=0.122 Sum_probs=48.0
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~ 207 (434)
++.||+.... ...+.++|+.+++-..+..... ....+....++.||+.... + ...++.+|+.+.
T Consensus 141 ~g~lyv~d~~------~~~I~~id~~~g~~~~~~~~~~---~~~ia~~~~g~~l~~~d~~-~------~~~I~~~d~~~~ 204 (409)
T 3hrp_A 141 NNTVLAYQRD------DPRVRLISVDDNKVTTVHPGFK---GGKPAVTKDKQRVYSIGWE-G------THTVYVYMKASG 204 (409)
T ss_dssp TTEEEEEETT------TTEEEEEETTTTEEEEEEETCC---BCBCEECTTSSEEEEEBSS-T------TCEEEEEEGGGT
T ss_pred CCCEEEEecC------CCcEEEEECCCCEEEEeeccCC---CCceeEecCCCcEEEEecC-C------CceEEEEEcCCC
Confidence 6789998652 1358999999887655533221 1112222234567776431 1 127899998765
Q ss_pred c-eEecCCCC--CCcccceEEEE--CCEEEEE
Q 013909 208 K-WDSIPPLP--SPRYSPATQLW--RGRLHVM 234 (434)
Q Consensus 208 ~-W~~~~~~p--~~r~~~~~~~~--~~~iyv~ 234 (434)
. ...+...+ ....-+.+++. ++.||+.
T Consensus 205 ~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~ 236 (409)
T 3hrp_A 205 WAPTRIGQLGSTFSGKIGAVALDETEEWLYFV 236 (409)
T ss_dssp TCEEEEEECCTTSCSCCCBCEECTTSSEEEEE
T ss_pred ceeEEeeeccchhcCCcEEEEEeCCCCeEEEE
Confidence 3 23331111 11111223332 6889995
No 265
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=65.14 E-value=67 Score=27.61 Aligned_cols=189 Identities=15% Similarity=0.049 Sum_probs=95.1
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe--CCEEEEEeccCCCCCCCCCceeEEEECC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~ 205 (434)
+++||+.-.. .+.+.+||+.+..-..+.+... ..-+++++. ++.||+.-.. ...+.++|+.
T Consensus 47 ~~~ly~~d~~------~~~I~~~~~~g~~~~~~~~~~~---~~p~~ia~d~~~~~lyv~d~~--------~~~I~~~~~~ 109 (267)
T 1npe_A 47 DKVVYWTDIS------EPSIGRASLHGGEPTTIIRQDL---GSPEGIALDHLGRTIFWTDSQ--------LDRIEVAKMD 109 (267)
T ss_dssp TTEEEEEETT------TTEEEEEESSSCCCEEEECTTC---CCEEEEEEETTTTEEEEEETT--------TTEEEEEETT
T ss_pred CCEEEEEECC------CCEEEEEecCCCCcEEEEECCC---CCccEEEEEecCCeEEEEECC--------CCEEEEEEcC
Confidence 5689987532 2358999998765333322111 123455554 6899997431 3578899987
Q ss_pred CCceEecCCCCCCcccceEEEE--CCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEE--
Q 013909 206 TRKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVF-- 281 (434)
Q Consensus 206 t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~-- 281 (434)
...-+.+.+....+.. .++.. +++||+...... ...+.+++ +....-+.+...+. ....+++.-
T Consensus 110 g~~~~~~~~~~~~~P~-~i~vd~~~g~lyv~~~~~~---~~~I~~~~-------~dg~~~~~~~~~~~-~~P~gia~d~~ 177 (267)
T 1npe_A 110 GTQRRVLFDTGLVNPR-GIVTDPVRGNLYWTDWNRD---NPKIETSH-------MDGTNRRILAQDNL-GLPNGLTFDAF 177 (267)
T ss_dssp SCSCEEEECSSCSSEE-EEEEETTTTEEEEEECCSS---SCEEEEEE-------TTSCCCEEEECTTC-SCEEEEEEETT
T ss_pred CCCEEEEEECCCCCcc-EEEEeeCCCEEEEEECCCC---CcEEEEEe-------cCCCCcEEEEECCC-CCCcEEEEcCC
Confidence 5443333211111112 23332 689999853210 12222333 21222122221111 112233333
Q ss_pred CCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeE-EcCCCCCCCCccceeEEEECCEEEEEcCcCCC
Q 013909 282 NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWK-VLPPMPKPNSHIECAWVIVNNSIIITGGTTEK 359 (434)
Q Consensus 282 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~-~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~ 359 (434)
++.||+.-... +.++++| ....-+ .+..+..| .++++.++.||+....+
T Consensus 178 ~~~lyv~d~~~----------------------~~I~~~~~~g~~~~~~~~~~~~P-----~gi~~d~~~lyva~~~~-- 228 (267)
T 1npe_A 178 SSQLCWVDAGT----------------------HRAECLNPAQPGRRKVLEGLQYP-----FAVTSYGKNLYYTDWKT-- 228 (267)
T ss_dssp TTEEEEEETTT----------------------TEEEEEETTEEEEEEEEECCCSE-----EEEEEETTEEEEEETTT--
T ss_pred CCEEEEEECCC----------------------CEEEEEecCCCceEEEecCCCCc-----eEEEEeCCEEEEEECCC--
Confidence 57899876533 2488887 332211 12222222 23456688999965322
Q ss_pred CCCccceeeeccEEEEECCCCceEE
Q 013909 360 HPMTKRMILVGEVFQFHLDSLTWSV 384 (434)
Q Consensus 360 ~~~~~~~~~~~~v~~yd~~~~~W~~ 384 (434)
+.+.++|+++.+-..
T Consensus 229 ----------~~v~~~d~~~g~~~~ 243 (267)
T 1npe_A 229 ----------NSVIAMDLAISKEMD 243 (267)
T ss_dssp ----------TEEEEEETTTTEEEE
T ss_pred ----------CeEEEEeCCCCCceE
Confidence 368999998776543
No 266
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=64.76 E-value=31 Score=34.40 Aligned_cols=121 Identities=19% Similarity=0.272 Sum_probs=62.7
Q ss_pred eEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCC------CceeEEEECCEEEEEcCCCCCCC
Q 013909 223 ATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGG------PHRACFVFNDRLFVVGGQEGDFM 296 (434)
Q Consensus 223 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~------~~~~~~~~~~~iyv~GG~~~~~~ 296 (434)
+-++.+++||+..... .+..+|. ..-...|+.....+... ...+.++.+++||+... +
T Consensus 63 ~P~v~~g~vyv~~~~~------~v~AlD~-----~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~-d---- 126 (582)
T 1flg_A 63 QAIVSDGVIYVTASYS------RLFALDA-----KTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL-D---- 126 (582)
T ss_dssp CCEEETTEEEEEETTT------EEEEEES-----SSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-T----
T ss_pred ccEEECCEEEEEcCCC------CEEEEEC-----CCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC-C----
Confidence 3456899999986532 1333332 13445688754433211 11244568999988532 1
Q ss_pred CCCCCCccccccccceeeCcEEEeC-CCC--CeEEcCCCCCCCCccceeEEEECC------EEEEEcCcCCCCCCcccee
Q 013909 297 AKPGSPIFKCSRRHEVVYGDVYMLD-DEM--KWKVLPPMPKPNSHIECAWVIVNN------SIIITGGTTEKHPMTKRMI 367 (434)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~v~~yd-~~~--~W~~~~~~p~~r~~~~~~~~~~~~------~i~v~GG~~~~~~~~~~~~ 367 (434)
..++++| .+. .|+.-...+........+-++.++ .||+ |.......
T Consensus 127 ------------------g~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~v-g~~~~e~~------ 181 (582)
T 1flg_A 127 ------------------ASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIH-GSSGDEFG------ 181 (582)
T ss_dssp ------------------TEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEE-CCBCGGGC------
T ss_pred ------------------CEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEE-eccccccC------
Confidence 1489999 444 698643221111111223345566 5554 43211100
Q ss_pred eeccEEEEECCCCc--eEE
Q 013909 368 LVGEVFQFHLDSLT--WSV 384 (434)
Q Consensus 368 ~~~~v~~yd~~~~~--W~~ 384 (434)
.-..++.||+++.+ |+.
T Consensus 182 ~~g~v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 182 VVGRLFARDPDTGEEIWMR 200 (582)
T ss_dssp CBCEEEEECTTTCCEEEEE
T ss_pred CCCEEEEEECCCCCEEeec
Confidence 12478999998766 864
No 267
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=63.97 E-value=81 Score=29.83 Aligned_cols=98 Identities=7% Similarity=-0.033 Sum_probs=52.8
Q ss_pred cceeeccCCCCcEEEcCCCCCCCCceeEEEE--CCEEEEEeccCCCCCceeeEEEEECCCCceE---ecCCCCCCCCcee
Q 013909 97 ATFADLPAPDLEWEQMPSAPVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWV---DRFDMPKDMAHSH 171 (434)
Q Consensus 97 ~~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~---~~~~~~~~~~r~~ 171 (434)
..+..+|+..++.+.+.. ...+ -..++.. ++.||+.....+. ....+..++... .|. .++.+.. -
T Consensus 159 ~~I~~id~~~~~v~~~~~-~~~~-P~~ia~d~~G~~lyvad~~~~~--~~~~v~~~~~~g-~~~~~~~l~~~~~-----p 228 (430)
T 3tc9_A 159 HPTRLIDFEKEYVSTVYS-GLSK-VRTICWTHEADSMIITNDQNNN--DRPNNYILTRES-GFKVITELTKGQN-----C 228 (430)
T ss_dssp EEEEEEETTTTEEEEEEC-CCSC-EEEEEECTTSSEEEEEECCSCT--TSEEEEEEEGGG-TSCSEEEEEECSS-----C
T ss_pred CcEEEEECCCCEEEEEec-CCCC-cceEEEeCCCCEEEEEeCCCCc--ccceEEEEeCCC-ceeeeeeeccCCC-----c
Confidence 477888888877766544 1111 1222222 3459988654322 223466677643 332 2332322 2
Q ss_pred eEEEEe--CCEEEEEeccCCCCCCCCCceeEEEECCCCceEec
Q 013909 172 LGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSI 212 (434)
Q Consensus 172 ~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~ 212 (434)
+.+++. ++.||+.-- ....+++||+.+..-..+
T Consensus 229 ~giavdp~~g~lyv~d~--------~~~~V~~~~~~~~~~~~~ 263 (430)
T 3tc9_A 229 NGAETHPINGELYFNSW--------NAGQVFRYDFTTQETTPL 263 (430)
T ss_dssp CCEEECTTTCCEEEEET--------TTTEEEEEETTTTEEEEE
T ss_pred eEEEEeCCCCEEEEEEC--------CCCEEEEEECCCCcEEEE
Confidence 345554 678998632 136799999987765333
No 268
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=63.54 E-value=1.4e+02 Score=30.75 Aligned_cols=203 Identities=15% Similarity=0.237 Sum_probs=103.0
Q ss_pred EEEEECCCCceEecCC-C-----CCC--CCceeeEEEEe---CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCC-
Q 013909 147 VDVYNFTDNKWVDRFD-M-----PKD--MAHSHLGVVSD---GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP- 214 (434)
Q Consensus 147 v~~yd~~t~~W~~~~~-~-----~~~--~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~- 214 (434)
+++-+-.-.+|+.+.. + +.. .....+++++. .+.+|+..|..... .....+++=+=.-.+|+++..
T Consensus 45 v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~~~~--~~~~~i~~S~DgG~TW~~~~~~ 122 (763)
T 3a0f_A 45 TYRWNAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDYVQW--DPWAAFLVSDDRGKTFKQYRSP 122 (763)
T ss_dssp EEEEETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSCTTT--CSCCEEEEESSTTSSCEEEECS
T ss_pred EEEECCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecccccC--CCCceEEEECCCCCCceeccCC
Confidence 7777777889999865 3 210 11233444443 36899876531111 112344444334568998852
Q ss_pred CC-----CCccc-ceEEEE---CCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCC---CceeEEEE-
Q 013909 215 LP-----SPRYS-PATQLW---RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGG---PHRACFVF- 281 (434)
Q Consensus 215 ~p-----~~r~~-~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~---~~~~~~~~- 281 (434)
.+ ..|.. ..+++. .+.+|+.+. ...+|... -...+|+.+..+|... .....+.+
T Consensus 123 ~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~--------~~~l~~S~-----DgG~TW~~~~~~~~~~~~~~~~~~i~~~ 189 (763)
T 3a0f_A 123 VPMGANDMGRNGGERLAVNPHWTDELWFGSR--------TQGLWRST-----DRAQTWSRMNQLPDSSTYGIGIISVIFD 189 (763)
T ss_dssp SCCCTTSTTTTSBCCEEECTTSTTCEEEECS--------SSCEEEES-----STTSSCEECTTSCCCSCTTTCEEEEEEC
T ss_pred cccCccccCccccceEEECCCCCCEEEEEeC--------CCcEEEEC-----CCCcCccccccCcccCCCccceEEEEEC
Confidence 21 11221 234433 367777641 12344421 3456899987666422 22222232
Q ss_pred ---CCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCC------------------CCcc
Q 013909 282 ---NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKP------------------NSHI 339 (434)
Q Consensus 282 ---~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~------------------r~~~ 339 (434)
.+.+|+.....+ .+++-+ ...+|+.+...|.. ....
T Consensus 190 p~~~~~~~~~~~~~g----------------------~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 247 (763)
T 3a0f_A 190 PKNVGTAYVASHAVG----------------------GLWVTWDGGANWSQVGGQPTQWSDWTKSIVAASGTAIQSSGPL 247 (763)
T ss_dssp SSSTTCEEEEESSTT----------------------CEEEESSSSSSCEECTTCCCSCCHHHHHHHHHHCCCCSSSSCE
T ss_pred CCCCCEEEEEEeCCC----------------------eEEEECCCCCCccccCCCccccccccccccccccccccCCCCc
Confidence 346776643211 155444 56799998755521 1111
Q ss_pred ceeEEE-ECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccCCC
Q 013909 340 ECAWVI-VNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKLPY 390 (434)
Q Consensus 340 ~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~lp~ 390 (434)
...+++ .++.+|+........ ... ....+++.+-...+|+.+.++|.
T Consensus 248 ~~~~~~~~~g~l~~~~~~~~~~-~~~---~~g~v~rS~D~G~tW~~~~~~~~ 295 (763)
T 3a0f_A 248 PIKIALGKNGRLYITYSDAPGP-WGV---LYGEVWSYDPTNGNWKHITPSRE 295 (763)
T ss_dssp EEEEEECTTSCEEEEEESSCSS-SCC---CCEEEEEEETTTTEEEECCTTSS
T ss_pred ceeEEECCCCcEEEEeccCCCC-CCC---cceeEEEEeCCCCceEECCCCCC
Confidence 112122 267888874211000 000 12378999999999999866554
No 269
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=62.77 E-value=1e+02 Score=28.83 Aligned_cols=213 Identities=11% Similarity=0.021 Sum_probs=103.1
Q ss_pred ceeeccCCCCcEEEcCCCCCCCCceeEEEE--CCEEEEEeccCCCCCceeeEEEEECCCC----ceEecCCCCCCCCcee
Q 013909 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDN----KWVDRFDMPKDMAHSH 171 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~----~W~~~~~~~~~~~r~~ 171 (434)
.+..++.....++.+.+ ..+.-.+++.. +++||+.--. ...++++++... ....+.... ...-
T Consensus 93 ~I~~i~l~~~~~~~~~~--~~~~~~~l~~d~~~~~lywsD~~------~~~I~~~~~~g~~~~~~~~~~~~~~---~~~p 161 (400)
T 3p5b_L 93 EVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLS------QRMICSTQLDRAHGVSSYDTVISRD---IQAP 161 (400)
T ss_dssp EEEEECTTSCSCEEEEC--SCSCEEEEEEETTTTEEEEEETT------TTEEEEEEC------CCCEEEECSS---CSCE
T ss_pred eeEEEccCCcceeEecc--ccCcceEEeeeeccCceEEEecC------CCeEEEEEcccCCCCCcceEEEeCC---CCCc
Confidence 45555555555544422 22233344443 6789987332 234888888752 222221111 1222
Q ss_pred eEEEEe--CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecC--CCCCCcccceEEE--ECCEEEEEcCCCCCCCCCC
Q 013909 172 LGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP--PLPSPRYSPATQL--WRGRLHVMGGSKENRHTPG 245 (434)
Q Consensus 172 ~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~--~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~ 245 (434)
.++++. ++.||+.-.. ...++++|+....-+.+. .+..|+ .+++ .++.||+.--.. ...
T Consensus 162 ~glavD~~~~~lY~~d~~--------~~~I~~~~~~g~~~~~l~~~~~~~P~---~iavdp~~g~ly~td~~~----~~~ 226 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSV--------LGTVSVADTKGVKRKTLFRENGSKPR---AIVVDPVHGFMYWTDWGT----PAK 226 (400)
T ss_dssp EEEEEETTTTEEEEEETT--------TTEEEEECTTTCSEEEEEECSSCCEE---EEEEETTTTEEEEEECSS----SCC
T ss_pred ccEEEEecCCceEEEECC--------CCeEEEEeCCCCceEEEEeCCCCCcc---eEEEecccCeEEEEeCCC----CCE
Confidence 345553 7899997431 357889998876554442 233332 2333 368899874111 123
Q ss_pred cceEEEEeeccccccCceEEccCCCCCCCceeEEEE--CCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-C
Q 013909 246 LEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVF--NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-D 322 (434)
Q Consensus 246 ~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~ 322 (434)
+++++ .....=+.+.... -....++++- +++||+.-... +.|+.+| .
T Consensus 227 I~~~~-------~dG~~~~~~~~~~-l~~P~glavd~~~~~lY~aD~~~----------------------~~I~~~d~d 276 (400)
T 3p5b_L 227 IKKGG-------LNGVDIYSLVTEN-IQWPNGITLDLLSGRLYWVDSKL----------------------HSISSIDVN 276 (400)
T ss_dssp EEEEE-------TTSCSCEEEECSS-CSCEEEEEEETTTTEEEEEETTT----------------------TEEEEEETT
T ss_pred EEEEe-------CCCCccEEEEECC-CCceEEEEEEeCCCEEEEEECCC----------------------CEEEEEeCC
Confidence 33333 1121111111111 0111233433 78999985432 2488887 4
Q ss_pred CC-CeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCC
Q 013909 323 EM-KWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSL 380 (434)
Q Consensus 323 ~~-~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~ 380 (434)
.. ..+.+.. +. ...+..++++.++.||+.--.+ +.|+++|..+.
T Consensus 277 G~~~~~~~~~-~~-~l~~P~gl~v~~~~lywtd~~~------------~~V~~~~~~~G 321 (400)
T 3p5b_L 277 GGNRKTILED-EK-RLAHPFSLAVFEDKVFWTDIIN------------EAIFSANRLTG 321 (400)
T ss_dssp SCCCEEEEEC-SS-TTSSEEEEEEETTEEEEEESSS------------CSEEEEESSSC
T ss_pred CCccEEEEeC-CC-CCCCCEEEEEeCCEEEEecCCC------------CeEEEEEcCCC
Confidence 33 3333221 11 1122335577899999986321 35788885444
No 270
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=60.19 E-value=93 Score=27.61 Aligned_cols=103 Identities=14% Similarity=0.112 Sum_probs=52.4
Q ss_pred cceeeccCCCCcE-EEcCCCCCCCCceeEEEECCEEEEEeccCCCCC--c-eeeEEEEECCCCceEecCCCCCCCCceee
Q 013909 97 ATFADLPAPDLEW-EQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDY--V-HSHVDVYNFTDNKWVDRFDMPKDMAHSHL 172 (434)
Q Consensus 97 ~~~~~~~~~~~~W-~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~--~-~~~v~~yd~~t~~W~~~~~~~~~~~r~~~ 172 (434)
..++.++..+++. ..+.. + .........+.+++.+....... . ..+++.+| ++++..+..- . . ..
T Consensus 152 ~~l~~~d~~~~~~~~~l~~-~---~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~---~-~~ 220 (347)
T 2gop_A 152 TTFWIFDTESEEVIEEFEK-P---RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-V---S-FY 220 (347)
T ss_dssp EEEEEEETTTTEEEEEEEE-E---TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-E---S-EE
T ss_pred ceEEEEECCCCeEEeeecC-C---CcccccCCCCeEEEEEecccccccccccccEEEeC--CCceEEeccC-c---c-ee
Confidence 3677788877766 55544 2 22233333333555554332211 1 45689999 7777665432 1 1 12
Q ss_pred EEEEeCC-EEEEEeccCCCCCCCCCceeEEEECCCCceEecCC
Q 013909 173 GVVSDGR-YIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP 214 (434)
Q Consensus 173 ~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~ 214 (434)
.. .-++ .|++.+. ...........++.+| +.+++.+.+
T Consensus 221 ~~-spdg~~l~~~~~-~~~~~~~~~~~l~~~d--~~~~~~l~~ 259 (347)
T 2gop_A 221 AV-DSDGERILLYGK-PEKKYMSEHNKLYIYD--GKEVMGILD 259 (347)
T ss_dssp EE-EECSSCEEEEEC-CSSSCCCSSCEEEEEC--SSCEEESST
T ss_pred eE-CCCCCEEEEEEc-cccCCccccceEEEEC--CCceEeccc
Confidence 22 3344 4544443 2211112246899999 667776643
No 271
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=59.08 E-value=83 Score=26.72 Aligned_cols=92 Identities=17% Similarity=0.229 Sum_probs=48.8
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCc--e-EecCC--CCCCCCceeeEEEE-eCCEEEEEeccCCCCCCCCCceeEE
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNK--W-VDRFD--MPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFV 201 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W-~~~~~--~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~ 201 (434)
++++|+|-|. ..|+||..+-. + ..|.. +|.....-..+... .++++|+|-| +..|+
T Consensus 87 ~~k~yfFkG~--------~yW~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG----------~~ywr 148 (218)
T 1gen_A 87 EEKAVFFAGN--------EYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG----------DKFWR 148 (218)
T ss_dssp TTEEEEEETT--------EEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET----------TEEEE
T ss_pred CCEEEEEeCC--------EEEEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEEC----------CEEEE
Confidence 6899999763 48899853110 0 11211 12111122222221 3689999977 67899
Q ss_pred EECCCCceEecCC-------CCCCcccceEEEEC--CEEEEEcCC
Q 013909 202 LDSETRKWDSIPP-------LPSPRYSPATQLWR--GRLHVMGGS 237 (434)
Q Consensus 202 yd~~t~~W~~~~~-------~p~~r~~~~~~~~~--~~iyv~GG~ 237 (434)
||..+++-..--| +..+..-.++...+ +++|.|-|.
T Consensus 149 ~d~~~~~v~~gyPr~i~~~w~g~p~~idaAf~~~~~g~~YfFkg~ 193 (218)
T 1gen_A 149 YNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGA 193 (218)
T ss_dssp EETTTTEECSSCCEEHHHHSSSCCSSCSEEEECTTTCEEEEEETT
T ss_pred EECccccccCCCCcchhhccCCCCCCCCEEEEEcCCCcEEEEECC
Confidence 9988764321100 11122223444444 899999664
No 272
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=58.70 E-value=1.2e+02 Score=28.57 Aligned_cols=125 Identities=12% Similarity=0.046 Sum_probs=72.5
Q ss_pred CcEE--EcCCCCCCCCceeEEEECCEEEEEeccCCCCC--ceeeEEEEE----CCCCc-eEecCCCCCCCCceeeEEEEe
Q 013909 107 LEWE--QMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDY--VHSHVDVYN----FTDNK-WVDRFDMPKDMAHSHLGVVSD 177 (434)
Q Consensus 107 ~~W~--~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~--~~~~v~~yd----~~t~~-W~~~~~~~~~~~r~~~~~~~~ 177 (434)
..|+ .|+.+|..-.-|+.+.+++.=|++|=..+.-. ... +..|. ..... =+.++.--. ......|+-.+
T Consensus 270 spW~~t~L~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~PRe~G-~~yfs~~~~sp~~~vrr~i~sey~-~~AsEPCvkyY 347 (670)
T 3ju4_A 270 SPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVG-LFYFPDAFNSPSNYVRRQIPSEYE-PDASEPCIKYY 347 (670)
T ss_dssp SCCEEEECCSCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEE-EEEETTTTTCTTCCEEEECCGGGC-TTEEEEEEEEE
T ss_pred CCceecccccccceeeeeeeeEecCCceEEEeccCCCCcceee-EEEecccccCCcceeeeechhhhc-cccccchhhhh
Confidence 4563 45666655567899999888888875443322 122 22221 11111 123332211 13456677788
Q ss_pred CCEEEEEe-ccCCCCCCCCCceeEEEECCCCceEecC-CCCCCcccceEEEECCEEEEEcC
Q 013909 178 GRYIYIVS-GQYGPQCRGPTSRTFVLDSETRKWDSIP-PLPSPRYSPATQLWRGRLHVMGG 236 (434)
Q Consensus 178 ~~~lyv~G-G~~~~~~~~~~~~~~~yd~~t~~W~~~~-~~p~~r~~~~~~~~~~~iyv~GG 236 (434)
++.||+.- |..+. .+-+.+.+-+..-..|+.+. |-..-....-.+.+++.||+||-
T Consensus 348 dgvLyLtTRgt~~~---~~GS~L~rs~d~Gq~w~slrfp~nvHhtnlPFakvgD~l~mFgs 405 (670)
T 3ju4_A 348 DGVLYLITRGTRGD---RLGSSLHRSRDIGQTWESLRFPHNVHHTTLPFAKVGDDLIMFGS 405 (670)
T ss_dssp TTEEEEEEEESCTT---SCCCEEEEESSTTSSCEEEECTTCCCSSCCCEEEETTEEEEEEE
T ss_pred CCEEEEEecCcCCC---CCcceeeeecccCCchhheeccccccccCCCcceeCCEEEEEec
Confidence 99999984 32221 23467788888888898773 11222334445678999999984
No 273
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=57.38 E-value=1.1e+02 Score=27.74 Aligned_cols=114 Identities=14% Similarity=0.084 Sum_probs=62.6
Q ss_pred ceeeccCCCCcEEEcCCCCCCCCceeEEEE--CCEEEEEeccCCCCCceeeEEEEECCCCceEecCC--CCCCCCceeeE
Q 013909 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFD--MPKDMAHSHLG 173 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~--~~~~~~r~~~~ 173 (434)
.+..+++.....+.+.+ ....-.+++.. ++.||+.--. ...++++++....-+.+.. +..| .+
T Consensus 54 ~I~~i~~~g~~~~~~~~--~~~~~~~l~~d~~~~~ly~~D~~------~~~I~r~~~~g~~~~~~~~~~~~~p-----~g 120 (349)
T 3v64_C 54 DIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVT------LDRILRANLNGSNVEEVVSTGLESP-----GG 120 (349)
T ss_dssp CEEEECTTSCCEEEEEC--SCSCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEECSSCSCC-----CE
T ss_pred ceEEEeCCCCeeEEeec--CCCceEEEEEeccccEEEEEecc------CCceEEEecCCCCceEEEeCCCCCc-----cE
Confidence 45666666655554432 11222333333 5789987421 2358999998876555422 2221 24
Q ss_pred EEE--eCCEEEEEeccCCCCCCCCCceeEEEECCCCceEec--CCCCCCcccceEEEE--CCEEEEEc
Q 013909 174 VVS--DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSI--PPLPSPRYSPATQLW--RGRLHVMG 235 (434)
Q Consensus 174 ~~~--~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~--~~~p~~r~~~~~~~~--~~~iyv~G 235 (434)
+++ .++.||+.-.. ...++++++....-+.+ ..+..|+ .+++. ++.||+.-
T Consensus 121 lavd~~~g~ly~~d~~--------~~~I~~~~~dG~~~~~l~~~~l~~P~---~iavdp~~g~ly~td 177 (349)
T 3v64_C 121 LAVDWVHDKLYWTDSG--------TSRIEVANLDGAHRKVLLWQSLEKPR---AIALHPMEGTIYWTD 177 (349)
T ss_dssp EEEETTTTEEEEEETT--------TTEEEEEETTSCSCEEEECTTCSCEE---EEEEETTTTEEEEEE
T ss_pred EEEecCCCeEEEEcCC--------CCeEEEEcCCCCceEEEEeCCCCCcc---eEEEecCcCeEEEec
Confidence 455 47899987331 35788999876543333 2233332 23333 68899884
No 274
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=56.73 E-value=94 Score=28.17 Aligned_cols=232 Identities=6% Similarity=-0.025 Sum_probs=0.0
Q ss_pred EEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEECC-CC
Q 013909 130 LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSE-TR 207 (434)
Q Consensus 130 ~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~-t~ 207 (434)
+.+.+|.+....... ++.+|+.+++.+.+...+.+.......+++. +++..+.+... .+..||.. +.
T Consensus 3 ~~~~vg~~~~~~~i~--~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~---------~v~~~~~~~~g 71 (365)
T 1jof_A 3 HHLMIGTWTPPGAIF--TVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK---------KWSSFAVKSPT 71 (365)
T ss_dssp EEEEEEESSSSCEEE--EEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT---------EEEEEEEEETT
T ss_pred EEEEEEEccCCCcEE--EEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc---------eEEEEEECCCC
Q ss_pred ceEecCCCC--CCcccceEEEECCEEEEEcCC-------------CCCCCCCCcceEEEEeeccccccCceEEccCC---
Q 013909 208 KWDSIPPLP--SPRYSPATQLWRGRLHVMGGS-------------KENRHTPGLEHWSIAVKDGKALEKAWRTEIPI--- 269 (434)
Q Consensus 208 ~W~~~~~~p--~~r~~~~~~~~~~~iyv~GG~-------------~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--- 269 (434)
+...+...+ ..-...+...-+..+|++-.. . ...+.+|++ ....+.......
T Consensus 72 ~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~----~g~v~v~~~------~~~g~~~~~~~~~~~ 141 (365)
T 1jof_A 72 EIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF----AGYGNVFSV------SETGKLEKNVQNYEY 141 (365)
T ss_dssp EEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS----CCEEEEEEE------CTTCCEEEEEEEEEC
T ss_pred CEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecC----CceEEEEcc------CCCCcCcceEeeEEe
Q ss_pred -CCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-C-CCCeEEcCCCCCC--CCccceeEE
Q 013909 270 -PRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-D-EMKWKVLPPMPKP--NSHIECAWV 344 (434)
Q Consensus 270 -p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~-~~~W~~~~~~p~~--r~~~~~~~~ 344 (434)
.....+..+..-+++.+++....... ++.|| . +.+.+.+..+..+ -......+.
T Consensus 142 ~~~~~~~~~~~spdG~~l~~~~~~~~~---------------------v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~ 200 (365)
T 1jof_A 142 QENTGIHGMVFDPTETYLYSADLTANK---------------------LWTHRKLASGEVELVGSVDAPDPGDHPRWVAM 200 (365)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTTTE---------------------EEEEEECTTSCEEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCcceEEEECCCCCEEEEEcCCCCE---------------------EEEEEECCCCCEEEeeeEecCCCCCCCCEeEE
Q ss_pred EECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCc----eEEeccCCCc------------eeeeee-EEECCEEEEE
Q 013909 345 IVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLT----WSVIGKLPYR------------IKTTLT-GFWDGWLYFT 407 (434)
Q Consensus 345 ~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~----W~~~~~lp~~------------r~~~~~-~~~~~~l~v~ 407 (434)
..+++.+++.......- .++.+|.++++ ...+..+|.. .....+ ..-+++.+++
T Consensus 201 spdg~~l~v~~~~~~~v---------~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v 271 (365)
T 1jof_A 201 HPTGNYLYALMEAGNRI---------CEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA 271 (365)
T ss_dssp CTTSSEEEEEETTTTEE---------EEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred CCCCCEEEEEECCCCeE---------EEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEE
Q ss_pred ccccC
Q 013909 408 SGQRD 412 (434)
Q Consensus 408 GG~~~ 412 (434)
+....
T Consensus 272 ~~~~~ 276 (365)
T 1jof_A 272 SSRAN 276 (365)
T ss_dssp EEEES
T ss_pred ECCCC
No 275
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=56.34 E-value=1.7e+02 Score=29.47 Aligned_cols=212 Identities=8% Similarity=0.024 Sum_probs=98.3
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCc-eeeEEEEeCCEEEEEeccCCCC-----CCCCCceeEE
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAH-SHLGVVSDGRYIYIVSGQYGPQ-----CRGPTSRTFV 201 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r-~~~~~~~~~~~lyv~GG~~~~~-----~~~~~~~~~~ 201 (434)
+++.++++-..... -...++++|+.+++..... ++. .+ ...+-. .++.||..-- +... .......+++
T Consensus 139 Dg~~lAy~~~~~G~-~~~~i~v~dl~tg~~~~~~-~~~--~k~~~~~Ws-Dg~~l~y~~~-~~~~~~~~~~~~~~~~v~~ 212 (693)
T 3iuj_A 139 DGRILAYSLSLAGS-DWREIHLMDVESKQPLETP-LKD--VKFSGISWL-GNEGFFYSSY-DKPDGSELSARTDQHKVYF 212 (693)
T ss_dssp TSSEEEEEEECSSC-CEEEEEEEETTTCSEEEEE-EEE--EESCCCEEE-TTTEEEEEES-SCCC-------CCCCEEEE
T ss_pred CCCEEEEEEecCCC-ceEEEEEEECCCCCCCccc-cCC--ceeccEEEe-CCCEEEEEEe-cCcccccccccCCCcEEEE
Confidence 56655554332222 1246999999999875431 111 11 222333 3445555432 2110 0012367888
Q ss_pred EECCCCce--EecCCCCC--CcccceE-EEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCce
Q 013909 202 LDSETRKW--DSIPPLPS--PRYSPAT-QLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHR 276 (434)
Q Consensus 202 yd~~t~~W--~~~~~~p~--~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~ 276 (434)
++..+.+= ..+...+. +.....+ ..-+++..++.-..+. ...++|-++ .+.....|+.+.+-..... .
T Consensus 213 ~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~---~~~~i~~~d---~~~~~~~~~~l~~~~~~~~-~ 285 (693)
T 3iuj_A 213 HRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST---SGNRLYVKD---LSQENAPLLTVQGDLDADV-S 285 (693)
T ss_dssp EETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS---SCCEEEEEE---TTSTTCCCEEEECSSSSCE-E
T ss_pred EECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC---CCcEEEEEE---CCCCCCceEEEeCCCCceE-E
Confidence 88876542 22222221 2211222 2334543333221111 112344332 1112225666544322222 1
Q ss_pred eEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CC---CCeEEcCCCCCCCCccceeEEEECCEEEE
Q 013909 277 ACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DE---MKWKVLPPMPKPNSHIECAWVIVNNSIII 352 (434)
Q Consensus 277 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~---~~W~~~~~~p~~r~~~~~~~~~~~~~i~v 352 (434)
.....+++||+....+.. ...++..| .+ ..|+.+.+-.. ... .+...++.|++
T Consensus 286 ~~~~~g~~l~~~t~~~~~-------------------~~~l~~~d~~~~~~~~~~~l~~~~~--~~~--~~s~~g~~lv~ 342 (693)
T 3iuj_A 286 LVDNKGSTLYLLTNRDAP-------------------NRRLVTVDAANPGPAHWRDLIPERQ--QVL--TVHSGSGYLFA 342 (693)
T ss_dssp EEEEETTEEEEEECTTCT-------------------TCEEEEEETTSCCGGGCEEEECCCS--SCE--EEEEETTEEEE
T ss_pred EEeccCCEEEEEECCCCC-------------------CCEEEEEeCCCCCccccEEEecCCC--CEE--EEEEECCEEEE
Confidence 234558899998765422 22577777 33 25887643222 111 33555666665
Q ss_pred EcCcCCCCCCccceeeeccEEEEECCCCceEEe
Q 013909 353 TGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVI 385 (434)
Q Consensus 353 ~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 385 (434)
..-.++ ...++++|+++.....+
T Consensus 343 ~~~~~g----------~~~l~~~d~~g~~~~~l 365 (693)
T 3iuj_A 343 EYMVDA----------TARVEQFDYEGKRVREV 365 (693)
T ss_dssp EEEETT----------EEEEEEECTTSCEEEEE
T ss_pred EEEECC----------eeEEEEEECCCCeeEEe
Confidence 443332 23689999887655554
No 276
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=54.19 E-value=1.2e+02 Score=26.91 Aligned_cols=125 Identities=10% Similarity=0.020 Sum_probs=59.7
Q ss_pred cceeeccCCCCcEEEcCCCCCCCCceeEEEECCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEE
Q 013909 97 ATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS 176 (434)
Q Consensus 97 ~~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~ 176 (434)
..++.++..+++-..+ .........-+++.+++....... ....++++|..+++...+...+ . ....+.
T Consensus 43 ~~l~~~d~~~~~~~~l-----~~~~~~~~SpDg~~la~~~~~~~~-~~~~l~~~~~~~g~~~~l~~~~----~-~~~~~w 111 (347)
T 2gop_A 43 NTIVIENLKNNARRFI-----ENATMPRISPDGKKIAFMRANEEK-KVSEIWVADLETLSSKKILEAK----N-IRSLEW 111 (347)
T ss_dssp EEEEEEETTTCCEEEE-----ESCEEEEECTTSSEEEEEEEETTT-TEEEEEEEETTTTEEEEEEEES----E-EEEEEE
T ss_pred ceEEEEeCCCCceEEc-----ccCCCeEECCCCCEEEEEEeccCC-CcceEEEEECCCCceEEEEcCC----C-ccceeE
Confidence 3667777776655544 111111222255444444332211 2345999999988876654332 1 222333
Q ss_pred e-CC-EEEEEeccC-----------------CCCC-CCCCceeEEEECCCCce-EecCCCCCCcccceEEEECCEEEEEc
Q 013909 177 D-GR-YIYIVSGQY-----------------GPQC-RGPTSRTFVLDSETRKW-DSIPPLPSPRYSPATQLWRGRLHVMG 235 (434)
Q Consensus 177 ~-~~-~lyv~GG~~-----------------~~~~-~~~~~~~~~yd~~t~~W-~~~~~~p~~r~~~~~~~~~~~iyv~G 235 (434)
. ++ .|++..... +... ......++++|+.+.+. +.+.. + .....+...+.+++.+
T Consensus 112 spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~---~~~~~~~spdg~~~~~ 187 (347)
T 2gop_A 112 NEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P---RFSSGIWHRDKIVVNV 187 (347)
T ss_dssp CTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E---TTCEEEEETTEEEEEE
T ss_pred CCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C---CcccccCCCCeEEEEE
Confidence 2 44 454443210 0000 00136789999998887 55544 3 2233333344355554
Q ss_pred C
Q 013909 236 G 236 (434)
Q Consensus 236 G 236 (434)
.
T Consensus 188 ~ 188 (347)
T 2gop_A 188 P 188 (347)
T ss_dssp E
T ss_pred e
Confidence 3
No 277
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=52.41 E-value=1.4e+02 Score=27.16 Aligned_cols=61 Identities=15% Similarity=0.183 Sum_probs=32.6
Q ss_pred EEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEec--cCCCceee--eeeEEECCEEEEEccccC
Q 013909 344 VIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIG--KLPYRIKT--TLTGFWDGWLYFTSGQRD 412 (434)
Q Consensus 344 ~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~--~lp~~r~~--~~~~~~~~~l~v~GG~~~ 412 (434)
...+++.++.++.+.... ..++.+|.......... .+...... ..++..++++++.|+.+.
T Consensus 227 fspdg~~l~~~s~d~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~ 291 (365)
T 4h5i_A 227 FIADDTVLIAASLKKGKG--------IVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDN 291 (365)
T ss_dssp EEETTEEEEEEEESSSCC--------EEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTS
T ss_pred EcCCCCEEEEEecCCcce--------eEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCC
Confidence 456888888887665432 24667776666554331 11111111 112223677777777543
No 278
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=51.07 E-value=1.6e+02 Score=27.48 Aligned_cols=55 Identities=15% Similarity=0.247 Sum_probs=31.1
Q ss_pred eEEEE-eCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCC-CCCcccceEEEECCEEEEEcC
Q 013909 172 LGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL-PSPRYSPATQLWRGRLHVMGG 236 (434)
Q Consensus 172 ~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~-p~~r~~~~~~~~~~~iyv~GG 236 (434)
+.+++ -+++||+.... ...+.++|+.+++-+.+... ..++ .+....++.||+...
T Consensus 134 ~~la~d~~g~lyv~d~~--------~~~I~~id~~~g~~~~~~~~~~~~~--ia~~~~g~~l~~~d~ 190 (409)
T 3hrp_A 134 WGIAAVGNNTVLAYQRD--------DPRVRLISVDDNKVTTVHPGFKGGK--PAVTKDKQRVYSIGW 190 (409)
T ss_dssp EEEEECSTTEEEEEETT--------TTEEEEEETTTTEEEEEEETCCBCB--CEECTTSSEEEEEBS
T ss_pred eEEEEeCCCCEEEEecC--------CCcEEEEECCCCEEEEeeccCCCCc--eeEecCCCcEEEEec
Confidence 34554 36889998541 25789999998776555322 1121 222222456777643
No 279
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=49.33 E-value=1.5e+02 Score=26.70 Aligned_cols=214 Identities=11% Similarity=0.031 Sum_probs=0.0
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~ 207 (434)
++++++.|+.++ +.+||..+.+-........ .........++.+.+.|+.+. .+..+|..+.
T Consensus 30 dg~~la~g~~~~-------~~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~--------~v~iWd~~~~ 91 (355)
T 3vu4_A 30 DQSCLILSTLKS-------FEIYNVHPVAHIMSQEMRH---LSKVRMLHRTNYVAFVTGVKE--------VVHIWDDVKK 91 (355)
T ss_dssp TSSEEEEECSSE-------EEEEEETTEEEEEEEECSC---CCEEEECTTSSEEEEECSSTT--------EEEEEETTTT
T ss_pred CCCEEEEEcCCE-------EEEEecCCcceeeeeecCC---eEEEEEcCCCCEEEEEECCcc--------EEEEEECCCC
Q ss_pred ceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEccCCCCCCCceeEEEECCEEEE
Q 013909 208 KWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFV 287 (434)
Q Consensus 208 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv 287 (434)
+-...-..+. .-.++....+.+++. ....+.+|++ ....+.+..+.. ....++...+.+.+
T Consensus 92 ~~~~~~~~~~--~v~~v~~~~~~~~~~-------~~~~i~i~d~--------~~~~~~~~~~~~--~~~~~~~s~~~la~ 152 (355)
T 3vu4_A 92 QDVSRIKVDA--PVKDLFLSREFIVVS-------YGDVISVFKF--------GNPWKRITDDIR--FGGVCEFSNGLLVY 152 (355)
T ss_dssp EEEEEEECSS--CEEEEEECSSEEEEE-------ETTEEEEEES--------STTCCBSSCCEE--EEEEEEEETTEEEE
T ss_pred cEEEEEECCC--ceEEEEEcCCEEEEE-------EcCEEEEEEC--------CCCceeeEEecc--CCceEEEEccEEEE
Q ss_pred E-cCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCC-------------eEE-cCCCCCCCCccceeEEEECCEEE
Q 013909 288 V-GGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMK-------------WKV-LPPMPKPNSHIECAWVIVNNSII 351 (434)
Q Consensus 288 ~-GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~-------------W~~-~~~~p~~r~~~~~~~~~~~~~i~ 351 (434)
. |+.++. +..+| .+.. ... +..+........+.+...+++++
T Consensus 153 ~sg~~~g~----------------------v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l 210 (355)
T 3vu4_A 153 SNEFNLGQ----------------------IHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMV 210 (355)
T ss_dssp EESSCTTC----------------------EEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEE
T ss_pred eCCCcCcE----------------------EEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEE
Q ss_pred EEcCcCCCCCCccceeeecc-EEEEECCCCceEEeccC--CCceeeeeeEEECCEEEEEccccC
Q 013909 352 ITGGTTEKHPMTKRMILVGE-VFQFHLDSLTWSVIGKL--PYRIKTTLTGFWDGWLYFTSGQRD 412 (434)
Q Consensus 352 v~GG~~~~~~~~~~~~~~~~-v~~yd~~~~~W~~~~~l--p~~r~~~~~~~~~~~l~v~GG~~~ 412 (434)
+.|+.++ . +.++|+.+.+-...-.. -.......+...++++++.|+.+.
T Consensus 211 ~s~s~d~------------~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~ 262 (355)
T 3vu4_A 211 ATCSQDG------------TIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKW 262 (355)
T ss_dssp EEEETTC------------SEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTC
T ss_pred EEEeCCC------------CEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCC
No 280
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=48.79 E-value=2.2e+02 Score=28.49 Aligned_cols=195 Identities=12% Similarity=0.061 Sum_probs=101.7
Q ss_pred eEEEEECCCCceEecCCCCCCCCceeeEEEEe--CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccce
Q 013909 146 HVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPA 223 (434)
Q Consensus 146 ~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~ 223 (434)
++...|+.+..-..+.+++. .+...++++. +++||+.-- ....++++++.....+.+....... -..
T Consensus 16 ~I~~i~l~~~~~~~~~~~~~--~~~~~~l~~d~~~~~lywtD~--------~~~~I~r~~~~g~~~~~v~~~g~~~-P~G 84 (628)
T 4a0p_A 16 DIRRISLETNNNNVAIPLTG--VKEASALDFDVTDNRIYWTDI--------SLKTISRAFMNGSALEHVVEFGLDY-PEG 84 (628)
T ss_dssp EEEEEESSCTTCEEECCCCS--CSCEEEEEEETTTTEEEEEET--------TTTEEEEEETTSCSCEEEECSSCSC-CCE
T ss_pred cEEEEECCCCCcceEEEcCC--CCceEEEEEECCCCEEEEEEC--------CCCeEEEEECCCCCcEEEEeCCCCC-cce
Confidence 47788887765433333322 2344555554 689999743 1367889998776555543221111 112
Q ss_pred EEE--ECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEc--cCCCCCCCceeEEEE--CCEEEEEc-CCCCCCC
Q 013909 224 TQL--WRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTE--IPIPRGGPHRACFVF--NDRLFVVG-GQEGDFM 296 (434)
Q Consensus 224 ~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~--~~~p~~~~~~~~~~~--~~~iyv~G-G~~~~~~ 296 (434)
+++ .+++||+.-.. ...+++.+ +....=+.+ ..+..+ ..+++. ++.||+.- |..
T Consensus 85 lAvD~~~~~LY~tD~~-----~~~I~v~~-------~dG~~~~~l~~~~l~~P---~~iavdp~~G~lY~tD~g~~---- 145 (628)
T 4a0p_A 85 MAVDWLGKNLYWADTG-----TNRIEVSK-------LDGQHRQVLVWKDLDSP---RALALDPAEGFMYWTEWGGK---- 145 (628)
T ss_dssp EEEETTTTEEEEEETT-----TTEEEEEE-------TTSTTCEEEECSSCCCE---EEEEEETTTTEEEEEECSSS----
T ss_pred EEEEeCCCEEEEEECC-----CCEEEEEe-------cCCCcEEEEEeCCCCCc---ccEEEccCCCeEEEeCCCCC----
Confidence 333 47899998432 12333333 212111112 122222 244444 68999875 321
Q ss_pred CCCCCCccccccccceeeCcEEEeC-CCCCeEEc-CCCCCCCCccceeEEEE--CCEEEEEcCcCCCCCCccceeeeccE
Q 013909 297 AKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVL-PPMPKPNSHIECAWVIV--NNSIIITGGTTEKHPMTKRMILVGEV 372 (434)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~-~~~p~~r~~~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~v 372 (434)
..|++.+ ....-+.+ ..+..|. ++++- +++||+.-... +.+
T Consensus 146 ------------------~~I~r~~~dG~~~~~l~~~~~~P~-----GlalD~~~~~LY~aD~~~------------~~I 190 (628)
T 4a0p_A 146 ------------------PKIDRAAMDGSERTTLVPNVGRAN-----GLTIDYAKRRLYWTDLDT------------NLI 190 (628)
T ss_dssp ------------------CEEEEEETTSCSCEEEECSCSSEE-----EEEEETTTTEEEEEETTT------------TEE
T ss_pred ------------------CEEEEEeCCCCceEEEECCCCCcc-----eEEEccccCEEEEEECCC------------CEE
Confidence 2477777 44333333 3333331 22333 68999976422 378
Q ss_pred EEEECCCCceEEec-cCCCceeeeeeEEECCEEEEEc
Q 013909 373 FQFHLDSLTWSVIG-KLPYRIKTTLTGFWDGWLYFTS 408 (434)
Q Consensus 373 ~~yd~~~~~W~~~~-~lp~~r~~~~~~~~~~~l~v~G 408 (434)
+++|+....=+.+. .++.| .++++.++.||+.=
T Consensus 191 ~~~d~dG~~~~v~~~~l~~P---~glav~~~~ly~tD 224 (628)
T 4a0p_A 191 ESSNMLGLNREVIADDLPHP---FGLTQYQDYIYWTD 224 (628)
T ss_dssp EEEETTSCSCEEEEECCSCE---EEEEEETTEEEEEE
T ss_pred EEEcCCCCceEEeeccCCCc---eEEEEECCEEEEec
Confidence 89998764434332 23332 46666778888874
No 281
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=47.01 E-value=85 Score=29.70 Aligned_cols=49 Identities=10% Similarity=0.111 Sum_probs=29.4
Q ss_pred CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEECC-EEEEEcC
Q 013909 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRG-RLHVMGG 236 (434)
Q Consensus 178 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG 236 (434)
++.||+.-- ...+.++|+.+++.+.+.+ ...+-.+-++.-++ .||+...
T Consensus 149 ~g~Lyv~d~---------~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~ 198 (430)
T 3tc9_A 149 HNHLYLVGE---------QHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITND 198 (430)
T ss_dssp EEEEEEEEB---------TEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEEC
T ss_pred CCeEEEEeC---------CCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeC
Confidence 478998732 1678999999988877644 11222222222234 5999864
No 282
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=46.53 E-value=1.8e+02 Score=26.85 Aligned_cols=94 Identities=11% Similarity=0.054 Sum_probs=48.4
Q ss_pred eEEEECCEEEEEeccCCCCCceeeEEEEECCCCce--Eec----CCCCCCCCceeeEEEE-eCCEEEEEeccCCCCCCCC
Q 013909 123 AAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKW--VDR----FDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGP 195 (434)
Q Consensus 123 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W--~~~----~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~ 195 (434)
+++.+++++|+|=|. .+|+++.....- ..+ +.||. ....+... .++++|+|-|
T Consensus 185 Av~~~~g~~~fFkg~--------~~Wr~~~~~~~~~p~~I~~~wpgLP~---~iDAa~~~~~~g~~~fFkg--------- 244 (365)
T 3ba0_A 185 AVTTVGNKIFFFKDR--------FFWLKVSERPKTSVNLISSLWPTLPS---GIEAAYEIEARNQVFLFKD--------- 244 (365)
T ss_dssp CEEEETTEEEEEETT--------EEEECCSSCCCCCEEEHHHHCSSCCS---SCCEEEEEGGGTEEEEEET---------
T ss_pred eEEEcCCeEEEEeCC--------EEEEEcCCCccCCccchhhhccCCCC---CccEEEEecCCCEEEEEeC---------
Confidence 445579999999763 266665443211 111 22332 22233333 3799999977
Q ss_pred CceeEEEECCCCc--e-EecCC--CCCCcccc-eEEEE--CCEEEEEcCC
Q 013909 196 TSRTFVLDSETRK--W-DSIPP--LPSPRYSP-ATQLW--RGRLHVMGGS 237 (434)
Q Consensus 196 ~~~~~~yd~~t~~--W-~~~~~--~p~~r~~~-~~~~~--~~~iyv~GG~ 237 (434)
+.+|+|+..+.. + +.+.. +|..-..- ++... ++++|+|-|.
T Consensus 245 -~~yWr~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG~ 293 (365)
T 3ba0_A 245 -DKYWLISNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVDN 293 (365)
T ss_dssp -TEEEECSTTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEETT
T ss_pred -CEEEEEcCCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEECC
Confidence 567888754321 1 22322 23211122 23333 5799999663
No 283
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=45.03 E-value=1.6e+02 Score=25.86 Aligned_cols=96 Identities=14% Similarity=0.106 Sum_probs=45.8
Q ss_pred eeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEECCEEEEEcCCCCCCCCCCcceEE
Q 013909 171 HLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWS 250 (434)
Q Consensus 171 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 250 (434)
.|++++.++++|..|--...+...+... ......+. .-..|+++..++++|.+|-..... +..
T Consensus 151 ~~~~~l~~G~v~~wG~n~~gqlg~p~~~-------~~~v~~i~----~G~~hs~al~~G~v~~wG~n~~gq-lg~----- 213 (282)
T 3qhy_B 151 YTALAVKNGGVIAWGDNYFGQTTVPAEA-------QSGVDDVA----GGIFHSLALKDGKVIAWGDNRYKQ-TTV----- 213 (282)
T ss_dssp SEEEEEETTEEEEEECCTTSTTSCCGGG-------GSSEEEEE----ECSSEEEEEETTEEEEEECCTTST-TCC-----
T ss_pred CEEEEEECCEEEEecCCCCCCCCCceec-------CCCeEEEE----ecCCEEEEEECCeEEEEECCCCCC-CCC-----
Confidence 4566666899999985332221100000 01122221 123456666789999998543221 110
Q ss_pred EEeeccccccCceEEccCCCCCCCceeEEEECCEEEEEcCCC
Q 013909 251 IAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQE 292 (434)
Q Consensus 251 ~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~ 292 (434)
|. .....+..+.....+..+.. ++++|..|-..
T Consensus 214 -------p~-~~~~~v~~i~~G~~h~~al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 214 -------PT-EALSGVSAIASGEWYSLALK-NGKVIAWGSSR 246 (282)
T ss_dssp -------CG-GGGSSCCEEEECSSCEEEEE-TTEEEEESTTC
T ss_pred -------Cc-ccCCCceEEEcCCCEEEEEE-CCEEEEecCCC
Confidence 10 11111222222333334445 99999999654
No 284
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=44.95 E-value=1.9e+02 Score=26.60 Aligned_cols=60 Identities=12% Similarity=0.176 Sum_probs=31.9
Q ss_pred CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEE--CCEEEEEcCCCCCCCCCCcceEE
Q 013909 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWS 250 (434)
Q Consensus 178 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~ 250 (434)
++.+++.|+.+ ..+..||..+.+-...-..+........+.+ ++++++.|+.++ .+.+|+
T Consensus 181 ~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg-----~i~iwd 242 (437)
T 3gre_A 181 EKSLLVALTNL--------SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRG-----IIDIWD 242 (437)
T ss_dssp SCEEEEEEETT--------SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTS-----CEEEEE
T ss_pred CCCEEEEEeCC--------CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCC-----eEEEEE
Confidence 46677777643 4688899987654322111101111222222 567777776543 466676
No 285
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=44.92 E-value=1.7e+02 Score=26.00 Aligned_cols=146 Identities=8% Similarity=0.004 Sum_probs=72.0
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCC-----CC-CceeeEEEEe-C-CEEEEEeccCCCCCCCCCcee
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK-----DM-AHSHLGVVSD-G-RYIYIVSGQYGPQCRGPTSRT 199 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~-----~~-~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~ 199 (434)
++.|||..+.. ...+.+||+....-..+..... +. ...-+++++. + +.|||.... ...+
T Consensus 154 ~g~lyv~d~~~-----~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~--------~~~I 220 (329)
T 3fvz_A 154 TGAVFVSDGYC-----NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE--------NGRI 220 (329)
T ss_dssp TCCEEEEECSS-----CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT--------TTEE
T ss_pred CCeEEEEeCCC-----CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC--------CCEE
Confidence 57899987532 2358999966544333321100 00 1223455654 3 899998542 3579
Q ss_pred EEEECCCCceEecCCC-CCCcccceEEEECCEEEEEcCCCCC--CCCCCcceEEEEeeccccccCceEEc-cCCCCCCCc
Q 013909 200 FVLDSETRKWDSIPPL-PSPRYSPATQLWRGRLHVMGGSKEN--RHTPGLEHWSIAVKDGKALEKAWRTE-IPIPRGGPH 275 (434)
Q Consensus 200 ~~yd~~t~~W~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~--~~~~~~~~~~~~~~~~~~~~~~W~~~-~~~p~~~~~ 275 (434)
.+||+.+.+....-.. .....-.+++...+.+|+..|...- .....+..|+ ..+.+.... .+.+.....
T Consensus 221 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~-------~~~g~~~~~~~~~~~~~~~ 293 (329)
T 3fvz_A 221 QCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMN-------FSSGEIIDVFKPVRKHFDM 293 (329)
T ss_dssp EEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEE-------TTTCCEEEEECCSSSCCSS
T ss_pred EEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEE-------cCCCeEEEEEcCCCCccCC
Confidence 9999987665433211 1122222334444777777664221 1122333444 334443332 211211112
Q ss_pred e-eEEEE-CCEEEEEcCCCC
Q 013909 276 R-ACFVF-NDRLFVVGGQEG 293 (434)
Q Consensus 276 ~-~~~~~-~~~iyv~GG~~~ 293 (434)
. +++.. ++.|||....+.
T Consensus 294 p~~ia~~~dG~lyvad~~~~ 313 (329)
T 3fvz_A 294 PHDIVASEDGTVYIGDAHTN 313 (329)
T ss_dssp EEEEEECTTSEEEEEESSSC
T ss_pred eeEEEECCCCCEEEEECCCC
Confidence 2 33332 678999876543
No 286
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=44.35 E-value=1.7e+02 Score=25.97 Aligned_cols=213 Identities=12% Similarity=0.022 Sum_probs=102.9
Q ss_pred ceeeccCCCCcEEEcCCCCCCCCceeEEEE--CCEEEEEeccCCCCCceeeEEEEECCC----CceEec-C-CCCCCCCc
Q 013909 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTD----NKWVDR-F-DMPKDMAH 169 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t----~~W~~~-~-~~~~~~~r 169 (434)
.+..++....+...+. +.-..-.+++.. +++||+.--. ...++++|+.+ ..-+.+ + .+..
T Consensus 11 ~I~~i~~~~~~~~~~~--~~~~~p~g~~~d~~~~~ly~~D~~------~~~I~~~~~~g~~~~~~~~~~~~~~~~~---- 78 (316)
T 1ijq_A 11 EVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNRIYWSDLS------QRMICSTQLDRAHGVSSYDTVISRDIQA---- 78 (316)
T ss_dssp SEEEEETTSCCCEEEE--CSCSSEEEEEEETTTTEEEEEETT------TTEEEEEEC--------CEEEECSSCSC----
T ss_pred eEEEEECCCcceEehh--cCCCceEEEEEEeCCCEEEEEECC------CCcEEEEECCCCCCCcccEEEEeCCCCC----
Confidence 4555565555444432 222223444443 5789998542 23589999876 222222 1 2222
Q ss_pred eeeEEEE--eCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecC--CCCCCcccceEEE--ECCEEEEEcCCCCCCCC
Q 013909 170 SHLGVVS--DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP--PLPSPRYSPATQL--WRGRLHVMGGSKENRHT 243 (434)
Q Consensus 170 ~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~--~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~ 243 (434)
-.++++ .++.||+.-. ....++++|+....-+.+. .+..|+ .+++ .++.||+..-.. .
T Consensus 79 -p~glavd~~~~~ly~~d~--------~~~~I~~~~~~g~~~~~~~~~~~~~P~---~iavdp~~g~ly~~d~~~----~ 142 (316)
T 1ijq_A 79 -PDGLAVDWIHSNIYWTDS--------VLGTVSVADTKGVKRKTLFRENGSKPR---AIVVDPVHGFMYWTDWGT----P 142 (316)
T ss_dssp -CCEEEEETTTTEEEEEET--------TTTEEEEEETTSSSEEEEEECTTCCEE---EEEEETTTTEEEEEECSS----S
T ss_pred -cCEEEEeecCCeEEEEEC--------CCCEEEEEeCCCCceEEEEECCCCCcc---eEEeCCCCCEEEEEccCC----C
Confidence 134555 4789999732 1367889998765433332 233332 2333 378899885211 1
Q ss_pred CCcceEEEEeeccccccCceEEccCCCCCCCceeEEEE--CCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC
Q 013909 244 PGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVF--NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD 321 (434)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 321 (434)
..+++++ +....-+.+..... ....++++- +++||+.-... +.|+++|
T Consensus 143 ~~I~~~~-------~dG~~~~~~~~~~~-~~P~gla~d~~~~~lY~~D~~~----------------------~~I~~~d 192 (316)
T 1ijq_A 143 AKIKKGG-------LNGVDIYSLVTENI-QWPNGITLDLLSGRLYWVDSKL----------------------HSISSID 192 (316)
T ss_dssp CEEEEEE-------TTSCCEEEEECSSC-SCEEEEEEETTTTEEEEEETTT----------------------TEEEEEE
T ss_pred CeEEEEc-------CCCCCeEEEEECCC-CCceEEEEeccCCEEEEEECCC----------------------CeEEEEe
Confidence 2233333 22222122211111 111234443 68999986533 2478887
Q ss_pred -CCCCeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCc
Q 013909 322 -DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLT 381 (434)
Q Consensus 322 -~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~ 381 (434)
....-+.+..... ...+-.++++.++.||+.--.+ +.+.++|+.+.+
T Consensus 193 ~dg~~~~~~~~~~~-~~~~P~giav~~~~ly~~d~~~------------~~V~~~~~~~g~ 240 (316)
T 1ijq_A 193 VNGGNRKTILEDEK-RLAHPFSLAVFEDKVFWTDIIN------------EAIFSANRLTGS 240 (316)
T ss_dssp TTSCSCEEEEECTT-TTSSEEEEEEETTEEEEEETTT------------TEEEEEETTTCC
T ss_pred cCCCceEEEeecCC-ccCCcEEEEEECCEEEEEECCC------------CeEEEEeCCCCc
Confidence 4332222211110 1112234566789999976322 368888876544
No 287
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=43.17 E-value=2e+02 Score=26.39 Aligned_cols=101 Identities=10% Similarity=-0.089 Sum_probs=51.8
Q ss_pred ceeeccCCCCcEEEcCCCCCCCCceeEEEE-CCEEEEEeccCC---CCCceeeEEEEECCCCceE-ecCCCC-C------
Q 013909 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI-KNLFYVFAGYGS---LDYVHSHVDVYNFTDNKWV-DRFDMP-K------ 165 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~---~~~~~~~v~~yd~~t~~W~-~~~~~~-~------ 165 (434)
.+..+|+.+.+ .+..+|.....+-+..- +..+|+..-... .....+.+.+||+.+.+-. .++ ++ .
T Consensus 48 ~v~v~D~~t~~--~~~~i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~-~~~~~~~~~g 124 (373)
T 2mad_H 48 QQWVLDAGSGS--ILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFDVG 124 (373)
T ss_pred EEEEEECCCCe--EEEEecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEE-CCCccccccC
Confidence 67788887764 33445544333222222 457888752211 1112356889999876422 221 21 0
Q ss_pred CCCceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceE
Q 013909 166 DMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWD 210 (434)
Q Consensus 166 ~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~ 210 (434)
..++ ...+.-.+..||+..-. ..+.+.++| ++++-.
T Consensus 125 ~~p~-~~~~spDG~~l~v~n~~-------~~~~v~viD-~t~~~~ 160 (373)
T 2mad_H 125 PYSW-MNANTPNNADLLFFQFA-------AGPAVGLVV-QGGSSD 160 (373)
T ss_pred CCcc-ceEECCCCCEEEEEecC-------CCCeEEEEE-CCCCEE
Confidence 0112 22222346678876321 136789999 887654
No 288
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=41.65 E-value=1.1e+02 Score=25.46 Aligned_cols=62 Identities=15% Similarity=0.186 Sum_probs=38.1
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEe-----cCCCCCCCCceeeEEEEe-CC-EEEEEeccCCCCCCCCCceeE
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVD-----RFDMPKDMAHSHLGVVSD-GR-YIYIVSGQYGPQCRGPTSRTF 200 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~-----~~~~~~~~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~ 200 (434)
++++|.|-|. ..|+||..+++-.. +...+ ..+..-.++... ++ ++|+|-| +..|
T Consensus 109 ~g~~yfFkG~--------~yw~yd~~~~~v~~gyPk~i~~~~-gip~~idaAf~~~~~~~~YfFkg----------~~y~ 169 (196)
T 3c7x_A 109 NGKTYFFRGN--------KYYRFNEELRAVDSEYPKNIKVWE-GIPESPRGSFMGSDEVFTYFYKG----------NKYW 169 (196)
T ss_dssp TTEEEEEETT--------EEEEEETTTTEECTTCSEEGGGSB-TCCSSCSEEEECTTSSEEEEEET----------TEEE
T ss_pred CCEEEEEECC--------EEEEEeCCcccccCCCCccHHHCC-CcCCCcceeEEecCCCEEEEEEC----------CEEE
Confidence 6899999763 48999988764321 11111 111222233333 44 9999977 6789
Q ss_pred EEECCCCc
Q 013909 201 VLDSETRK 208 (434)
Q Consensus 201 ~yd~~t~~ 208 (434)
+||..+.+
T Consensus 170 r~d~~~~~ 177 (196)
T 3c7x_A 170 KFNNQKLK 177 (196)
T ss_dssp EEETTTTE
T ss_pred EEECCcce
Confidence 99998764
No 289
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=39.90 E-value=2.1e+02 Score=25.83 Aligned_cols=263 Identities=10% Similarity=0.114 Sum_probs=0.0
Q ss_pred ccceeeccCCCCcEEEcCCCCCCCCceeEEEECCEEEEEe---ccCCCCCceeeEEEEECCCCceEecCCCC-----CCC
Q 013909 96 SATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFA---GYGSLDYVHSHVDVYNFTDNKWVDRFDMP-----KDM 167 (434)
Q Consensus 96 ~~~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~~~~iyv~G---G~~~~~~~~~~v~~yd~~t~~W~~~~~~~-----~~~ 167 (434)
...++.+|..+++-...-+....- +.+..--+..+|+.. +........+.+.+||+.+.+-..--+++ ...
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~ 108 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLN 108 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCC
T ss_pred cCeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCC
Q ss_pred CceeeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEec-CCCCCC---------cccceEEEECCEEEEEcCC
Q 013909 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSI-PPLPSP---------RYSPATQLWRGRLHVMGGS 237 (434)
Q Consensus 168 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~-~~~p~~---------r~~~~~~~~~~~iyv~GG~ 237 (434)
.-.+.++.-.+..||+... ...+.+.++|+.+++-... -+.+.. ...+.+..-++++.++.-.
T Consensus 109 ~p~~i~~spdg~~l~v~n~-------~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~ 181 (361)
T 2oiz_A 109 YDGLFRQTTDGKFIVLQNA-------SPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLG 181 (361)
T ss_dssp CGGGEEECTTSSEEEEEEE-------SSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEEC
T ss_pred CcceEEECCCCCEEEEECC-------CCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEEC
Q ss_pred CCCCCC---------------------------------CCcceEEEEeeccccccCceEEccC-------------CCC
Q 013909 238 KENRHT---------------------------------PGLEHWSIAVKDGKALEKAWRTEIP-------------IPR 271 (434)
Q Consensus 238 ~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~W~~~~~-------------~p~ 271 (434)
...... ..+..++ ...++-....+ .|.
T Consensus 182 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d-------~~~~~~~~~~~~~~~~~~~~~~~~~p~ 254 (361)
T 2oiz_A 182 EDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSAD-------FSGDEVKVDGPWSLLNDEDKAKNWVPG 254 (361)
T ss_dssp TTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEE-------CSSSSCEEEEEEESCCHHHHHTTCEEC
T ss_pred CCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEE-------ecCCCceecccccccCccccccccccC
Q ss_pred CCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEcCCCCCCCCccceeEEEECCEE
Q 013909 272 GGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSI 350 (434)
Q Consensus 272 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~~~~i 350 (434)
+....+...-++++|+....++. ........+.++.+| .+. +.+..++.+. -.++++..-+..|
T Consensus 255 g~~~~a~~~dg~~lyv~~~~~~~------------~~~~~~~~~~v~viD~~t~--~~v~~i~~~~-p~~ia~spdg~~l 319 (361)
T 2oiz_A 255 GYNLVGLHRASGRMYVFMHPDGK------------EGTHKFPAAEIWVMDTKTK--QRVARIPGRD-ALSMTIDQQRNLM 319 (361)
T ss_dssp CSSCEEEETTTTEEEEEEESSCC------------TTCTTCCCSEEEEEETTTT--EEEEEEECTT-CCEEEEETTTTEE
T ss_pred CeeEEEEecCCCeEEEEEccCCC------------cccccCCCceEEEEECCCC--cEEEEEecCC-eeEEEECCCCCEE
Q ss_pred EEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccC-CCceeeeeeEEECC
Q 013909 351 IITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKL-PYRIKTTLTGFWDG 402 (434)
Q Consensus 351 ~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~l-p~~r~~~~~~~~~~ 402 (434)
|+.++ + ++.+||+++.+-+.+..+ +....-..++...+
T Consensus 320 ~v~n~-~-------------~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~ 358 (361)
T 2oiz_A 320 LTLDG-G-------------NVNVYDISQPEPKLLRTIEGAAEASLQVQFHPV 358 (361)
T ss_dssp EEECS-S-------------CEEEEECSSSSCEEEEEETTSCSSEEEEEECCC
T ss_pred EEeCC-C-------------eEEEEECCCCcceeeEEeccCCCCcEEEEecCC
No 290
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=39.65 E-value=60 Score=30.43 Aligned_cols=71 Identities=11% Similarity=0.145 Sum_probs=43.4
Q ss_pred CCEEEEEecc---CCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEE-eCC--EEEEEeccCCCCCCCCCceeEE
Q 013909 128 KNLFYVFAGY---GSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGR--YIYIVSGQYGPQCRGPTSRTFV 201 (434)
Q Consensus 128 ~~~iyv~GG~---~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~-~~~--~lyv~GG~~~~~~~~~~~~~~~ 201 (434)
++++||.-+. ......-++++++|+.|.+-..- ++. +..-.++++ -++ .||+.-+. .+++.+
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~--i~v--g~~~~~lavs~D~~~~ly~tn~~--------~~~VsV 358 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAK--FEM--GHEIDSINVSQDEKPLLYALSTG--------DKTLYI 358 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEE--EEE--EEEECEEEECSSSSCEEEEEETT--------TTEEEE
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEE--EEC--CCCcceEEECCCCCeEEEEEcCC--------CCeEEE
Confidence 6799997432 22223457899999999875432 222 222334444 343 57775431 478999
Q ss_pred EECCCCceE
Q 013909 202 LDSETRKWD 210 (434)
Q Consensus 202 yd~~t~~W~ 210 (434)
||..+.+-.
T Consensus 359 iD~~t~k~~ 367 (386)
T 3sjl_D 359 HDAESGEEL 367 (386)
T ss_dssp EETTTCCEE
T ss_pred EECCCCcEE
Confidence 999998754
No 291
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=36.93 E-value=2.7e+02 Score=26.22 Aligned_cols=76 Identities=13% Similarity=-0.034 Sum_probs=41.2
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEE--eCCEEEEEeccCCCC-CCCCCceeEEEEC
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS--DGRYIYIVSGQYGPQ-CRGPTSRTFVLDS 204 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~-~~~~~~~~~~yd~ 204 (434)
..++||.-...... . +.+.++|+.+++=. ..++. .... .+++ .+.+||+.--..... .....+.+.++|+
T Consensus 84 ~~~vyV~n~~~~~~-~-~~VsVID~~t~~vv--~~I~v--G~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 84 ARRVYIQDPAHFAA-I-TQQFVIDGSTGRIL--GMTDG--GFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp TTEEEEEECTTTCS-S-EEEEEEETTTTEEE--EEEEE--CSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCEEEEECCCcCCC-C-CeEEEEECCCCEEE--EEEEC--CCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 45688876532211 1 67999999987643 22222 1122 3333 356788874210000 0001367999999
Q ss_pred CCCceE
Q 013909 205 ETRKWD 210 (434)
Q Consensus 205 ~t~~W~ 210 (434)
.+++-.
T Consensus 157 ~t~~vv 162 (426)
T 3c75_H 157 VTFLPI 162 (426)
T ss_dssp TTCCEE
T ss_pred CCCcEE
Confidence 998753
No 292
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=36.34 E-value=2.1e+02 Score=28.74 Aligned_cols=25 Identities=8% Similarity=0.030 Sum_probs=17.6
Q ss_pred eEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCC
Q 013909 172 LGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (434)
Q Consensus 172 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 206 (434)
-+++..++++|+|=| +.+|+++...
T Consensus 447 DAit~~rg~~yfFKg----------~~yWr~~~~~ 471 (631)
T 1ck7_A 447 DGIAQIRGEIFFFKD----------RFIWRTVTPR 471 (631)
T ss_dssp SEEEECSSSEEEECS----------SEEEEESCTT
T ss_pred ceeEecCCcEEEEcC----------CEEEEEcCCC
Confidence 355667899999966 4677776544
No 293
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=34.38 E-value=2.7e+02 Score=25.42 Aligned_cols=76 Identities=11% Similarity=-0.061 Sum_probs=39.3
Q ss_pred CEEEEEeccCCCCCceeeEEEEECCCCceEecCCCCCCCCceeeEEEEeCCEEEEEeccCCCCC-CCCCceeEEEECCCC
Q 013909 129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQC-RGPTSRTFVLDSETR 207 (434)
Q Consensus 129 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~-~~~~~~~~~yd~~t~ 207 (434)
..+|+.-+... .... .+.+||+.+.+- +..++... ..+.++.-.+..+|+..-...... ....+.+.+||+.+.
T Consensus 33 ~~~yv~~~~~~-~~~~-~v~v~D~~t~~~--~~~i~~g~-~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~ 107 (373)
T 2mad_H 33 RRSYINLPAHH-SAII-QQWVLDAGSGSI--LGHVNGGF-LPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF 107 (373)
T ss_pred CEEEEeCCccc-CCcc-EEEEEECCCCeE--EEEecCCC-CCCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC
Confidence 45777643111 1111 689999998763 33344321 112223334668998753211100 011367889999876
Q ss_pred ce
Q 013909 208 KW 209 (434)
Q Consensus 208 ~W 209 (434)
+-
T Consensus 108 ~~ 109 (373)
T 2mad_H 108 LP 109 (373)
T ss_pred cE
Confidence 53
No 294
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=33.97 E-value=2.4e+02 Score=25.76 Aligned_cols=29 Identities=14% Similarity=0.132 Sum_probs=20.3
Q ss_pred EECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEe
Q 013909 345 IVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVI 385 (434)
Q Consensus 345 ~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 385 (434)
..+++.++.|+.++ .+.+||..+.+-..+
T Consensus 351 s~~~~~l~s~s~dg------------~v~iwd~~~~~~~~~ 379 (447)
T 3dw8_B 351 NGSDSVVMTGSYNN------------FFRMFDRNTKRDITL 379 (447)
T ss_dssp CTTSSEEEEECSTT------------EEEEEETTTCCEEEE
T ss_pred CCCCCEEEEeccCC------------EEEEEEcCCCcceee
Confidence 34566677777552 688999988876553
No 295
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=32.73 E-value=3.4e+02 Score=26.00 Aligned_cols=73 Identities=14% Similarity=0.099 Sum_probs=37.9
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCC----ceEecC---CC--CCCCCceeeEEEEeCCEEEEEeccCCCCCCCCCce
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDN----KWVDRF---DM--PKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSR 198 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~----~W~~~~---~~--~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~ 198 (434)
..++|+-|..+ +.++++|..++ +-...- .+ +....+-++..+.-++ |||-.--+..+ .....
T Consensus 95 r~~l~v~~l~s------~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g--~~~g~ 165 (462)
T 2ece_A 95 RRFLIVPGLRS------SRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEG--EGPGG 165 (462)
T ss_dssp SCEEEEEBTTT------CCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTS--CSCCE
T ss_pred CCEEEEccCCC------CeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCC--CCCCe
Confidence 44666665543 45999999876 322211 01 0011233333444566 77742111111 22478
Q ss_pred eEEEECCCCce
Q 013909 199 TFVLDSETRKW 209 (434)
Q Consensus 199 ~~~yd~~t~~W 209 (434)
+.++|.+|.+-
T Consensus 166 v~vlD~~T~~v 176 (462)
T 2ece_A 166 ILMLDHYSFEP 176 (462)
T ss_dssp EEEECTTTCCE
T ss_pred EEEEECCCCeE
Confidence 99999998764
No 296
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=31.08 E-value=2e+02 Score=25.45 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=32.0
Q ss_pred cEEEeC-CCCCeEEcCCCCCCCCccceeEEEECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEeccC
Q 013909 316 DVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGKL 388 (434)
Q Consensus 316 ~v~~yd-~~~~W~~~~~~p~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~l 388 (434)
.+++|| .+.+.+.+. .+. ....-+...++++++... ..+++||+++.+.+.+...
T Consensus 72 ~i~~~d~~~~~~~~~~-~~~---~v~~i~~~~dg~l~v~~~--------------~gl~~~d~~~g~~~~~~~~ 127 (326)
T 2ghs_A 72 ELHELHLASGRKTVHA-LPF---MGSALAKISDSKQLIASD--------------DGLFLRDTATGVLTLHAEL 127 (326)
T ss_dssp EEEEEETTTTEEEEEE-CSS---CEEEEEEEETTEEEEEET--------------TEEEEEETTTCCEEEEECS
T ss_pred EEEEEECCCCcEEEEE-CCC---cceEEEEeCCCeEEEEEC--------------CCEEEEECCCCcEEEEeeC
Confidence 488898 554443332 221 112222345788887541 1489999999988776543
No 297
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=29.03 E-value=4.6e+02 Score=26.38 Aligned_cols=66 Identities=8% Similarity=0.025 Sum_probs=33.2
Q ss_pred ceeeccCCCCcEEEcCCCCC-CCCc--e--eEEEECCEEEEEeccCCC---CCceeeEEEEECCCCceEecCCC
Q 013909 98 TFADLPAPDLEWEQMPSAPV-PRLD--G--AAIQIKNLFYVFAGYGSL---DYVHSHVDVYNFTDNKWVDRFDM 163 (434)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~p~-~R~~--~--~~~~~~~~iyv~GG~~~~---~~~~~~v~~yd~~t~~W~~~~~~ 163 (434)
.+..+|..+++=..+-.... .... . -...-+++.++++..+.. .....++++||..+++-..+...
T Consensus 37 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~ 110 (740)
T 4a5s_A 37 NILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERI 110 (740)
T ss_dssp EEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC
T ss_pred cEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccC
Confidence 56677776665443322111 1111 1 112235554455443211 11346789999999987766543
No 298
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=28.94 E-value=3.1e+02 Score=24.39 Aligned_cols=192 Identities=13% Similarity=0.055 Sum_probs=94.3
Q ss_pred eeEEEEECCCCc--eEecCCCCCCCCceeeEEEEe--CCEEEEEeccCCCCCCCCCceeEEEECCCCc---eEecCCCCC
Q 013909 145 SHVDVYNFTDNK--WVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSETRK---WDSIPPLPS 217 (434)
Q Consensus 145 ~~v~~yd~~t~~--W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~---W~~~~~~p~ 217 (434)
.++.++|+.... -+.+ .+......++... +++||+.-- ....++++++.... +.....+..
T Consensus 13 ~~I~~i~l~~~~~~~~~~----~~~~~~~~~ld~d~~~~~lyw~D~--------~~~~I~r~~~~g~~~~~~~~~~~l~~ 80 (318)
T 3sov_A 13 RDLRLVDATNGKENATIV----VGGLEDAAAVDFVFSHGLIYWSDV--------SEEAIKRTEFNKTESVQNVVVSGLLS 80 (318)
T ss_dssp EEEEEEETTCTTSCCEEE----EEEEEEEEEEEEEGGGTEEEEEET--------TTTEEEEEETTSSSCCCEEEEECCSC
T ss_pred CeEEEEECCCCceEEEEE----ecCCCccEEEEEEeCCCEEEEEEC--------CCCcEEEEEccCCCceEEEEcCCCCC
Confidence 457888887753 1111 1001223334433 589999732 13678899987652 222222222
Q ss_pred CcccceEEE--ECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEcc--CCCCCCCceeEEEE--CCEEEEEcCC
Q 013909 218 PRYSPATQL--WRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEI--PIPRGGPHRACFVF--NDRLFVVGGQ 291 (434)
Q Consensus 218 ~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~p~~~~~~~~~~~--~~~iyv~GG~ 291 (434)
| ..+++ .++.||+.-.. ...+.+++ +....-+.+. .+..+ ..+++. ++.||+.--.
T Consensus 81 p---~glavd~~~g~ly~~d~~-----~~~I~~~~-------~dG~~~~~l~~~~~~~P---~giavdp~~g~ly~td~~ 142 (318)
T 3sov_A 81 P---DGLACDWLGEKLYWTDSE-----TNRIEVSN-------LDGSLRKVLFWQELDQP---RAIALDPSSGFMYWTDWG 142 (318)
T ss_dssp C---CEEEEETTTTEEEEEETT-----TTEEEEEE-------TTSCSCEEEECSSCSSE---EEEEEEGGGTEEEEEECS
T ss_pred c---cEEEEEcCCCeEEEEECC-----CCEEEEEE-------CCCCcEEEEEeCCCCCc---cEEEEeCCCCEEEEEecC
Confidence 2 12333 47889988432 12233333 2222111221 12222 133343 6889987521
Q ss_pred CCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEc-C-CCCCCCCccceeEEEE--CCEEEEEcCcCCCCCCccce
Q 013909 292 EGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVL-P-PMPKPNSHIECAWVIV--NNSIIITGGTTEKHPMTKRM 366 (434)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~-~-~~p~~r~~~~~~~~~~--~~~i~v~GG~~~~~~~~~~~ 366 (434)
. ...|++++ ....-+.+ . .+..| .++++- +++||+.-..
T Consensus 143 ~---------------------~~~I~r~~~dG~~~~~~~~~~l~~P-----nglavd~~~~~lY~aD~~---------- 186 (318)
T 3sov_A 143 E---------------------VPKIERAGMDGSSRFIIINSEIYWP-----NGLTLDYEEQKLYWADAK---------- 186 (318)
T ss_dssp S---------------------SCEEEEEETTSCSCEEEECSSCSCE-----EEEEEETTTTEEEEEETT----------
T ss_pred C---------------------CCEEEEEEcCCCCeEEEEECCCCCc-----cEEEEeccCCEEEEEECC----------
Confidence 1 12488887 43322222 2 22222 123443 7899998542
Q ss_pred eeeccEEEEECCCCceEEecc--CCCceeeeeeEEECCEEEEE
Q 013909 367 ILVGEVFQFHLDSLTWSVIGK--LPYRIKTTLTGFWDGWLYFT 407 (434)
Q Consensus 367 ~~~~~v~~yd~~~~~W~~~~~--lp~~r~~~~~~~~~~~l~v~ 407 (434)
.+.++++|++...-+.+.. +.. -.++++.++.+|+.
T Consensus 187 --~~~I~~~d~dG~~~~~~~~~~~~~---P~glav~~~~lywt 224 (318)
T 3sov_A 187 --LNFIHKSNLDGTNRQAVVKGSLPH---PFALTLFEDILYWT 224 (318)
T ss_dssp --TTEEEEEETTSCSCEEEECSCCSC---EEEEEEETTEEEEE
T ss_pred --CCEEEEEcCCCCceEEEecCCCCC---ceEEEEeCCEEEEE
Confidence 1379999988655444432 222 24555567788877
No 299
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=27.22 E-value=3.3e+02 Score=24.16 Aligned_cols=101 Identities=9% Similarity=0.078 Sum_probs=50.5
Q ss_pred CCEEEEEeccCCCCCceeeEEEEECCCCceEecCCCC-CC--CCceeeEEEEe-CCEEEEEeccCCCCCCCCCceeEEEE
Q 013909 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP-KD--MAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLD 203 (434)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~-~~--~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd 203 (434)
++++|+..-...... ..++.++ +.+-...+... .+ .-..-+++++. +++||++.-.... .....+.+||
T Consensus 27 ~g~~~v~~~~~~~~~--~~l~~~~--~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~---~~~~~i~~~d 99 (343)
T 2qe8_A 27 DGRLFLSLHQFYQPE--MQVAELT--QDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQS---KSVPKLVAWD 99 (343)
T ss_dssp TSCEEEEECGGGCCS--CSEEEEE--TTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHH---TSCCEEEEEE
T ss_pred CCCEEEEeCCCCCCc--eEEEEEC--CCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCc---CCCCeEEEEE
Confidence 678988853211111 3477787 44443332211 00 01234556654 5899997521100 0135799999
Q ss_pred CCCCceEecCCCC-----CCcccceEEEE--CCEEEEEc
Q 013909 204 SETRKWDSIPPLP-----SPRYSPATQLW--RGRLHVMG 235 (434)
Q Consensus 204 ~~t~~W~~~~~~p-----~~r~~~~~~~~--~~~iyv~G 235 (434)
+.+++-...-.+| ....-..+++- ++.+|+..
T Consensus 100 ~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd 138 (343)
T 2qe8_A 100 TLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISD 138 (343)
T ss_dssp TTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEE
T ss_pred CCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEc
Confidence 9988743221221 11122334443 57898874
No 300
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=25.71 E-value=69 Score=28.21 Aligned_cols=99 Identities=16% Similarity=0.208 Sum_probs=49.8
Q ss_pred cceeeccCCCCcEEEcCCCCCCCCceeEEEE-CC-EEEEEeccCCCCCceeeEEEEECCCCceEe---cCCCCCCCCcee
Q 013909 97 ATFADLPAPDLEWEQMPSAPVPRLDGAAIQI-KN-LFYVFAGYGSLDYVHSHVDVYNFTDNKWVD---RFDMPKDMAHSH 171 (434)
Q Consensus 97 ~~~~~~~~~~~~W~~~~~~p~~R~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~---~~~~~~~~~r~~ 171 (434)
..++.+++.+++.+.+. ... ....++.. ++ .||+....... .....+++||+..+.... ....+.. .-
T Consensus 169 ~~v~~~d~~~g~~~~~~--~~~-~p~gl~~spdg~~lyv~~~~~~~-~~~~~i~~~~~~~~~l~~~~~~~~~~~~---~p 241 (305)
T 3dr2_A 169 HSVYRLPPDGSPLQRMA--DLD-HPNGLAFSPDEQTLYVSQTPEQG-HGSVEITAFAWRDGALHDRRHFASVPDG---LP 241 (305)
T ss_dssp EEEEEECSSSCCCEEEE--EES-SEEEEEECTTSSEEEEEECCC----CCCEEEEEEEETTEEEEEEEEECCSSS---CC
T ss_pred CeEEEEcCCCCcEEEEe--cCC-CCcceEEcCCCCEEEEEecCCcC-CCCCEEEEEEecCCCccCCeEEEECCCC---CC
Confidence 46888888777766653 111 11223333 34 57776432110 012458999987654221 1111111 11
Q ss_pred eEEEE-eCCEEEEEeccCCCCCCCCCceeEEEECCCCceEec
Q 013909 172 LGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSI 212 (434)
Q Consensus 172 ~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~ 212 (434)
.++++ .++.||+..+ ..+.+||+....-..+
T Consensus 242 dgi~~d~~G~lwv~~~----------~gv~~~~~~g~~~~~~ 273 (305)
T 3dr2_A 242 DGFCVDRGGWLWSSSG----------TGVCVFDSDGQLLGHI 273 (305)
T ss_dssp CSEEECTTSCEEECCS----------SEEEEECTTSCEEEEE
T ss_pred CeEEECCCCCEEEecC----------CcEEEECCCCCEEEEE
Confidence 12333 3567887532 3589999976554444
No 301
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=25.52 E-value=2.1e+02 Score=26.27 Aligned_cols=26 Identities=12% Similarity=0.066 Sum_probs=18.6
Q ss_pred CCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEE
Q 013909 347 NNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSV 384 (434)
Q Consensus 347 ~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 384 (434)
++++++.|+.++ .+.+||+.+.+...
T Consensus 225 ~~~~l~s~~~dg------------~i~iwd~~~~~~~~ 250 (437)
T 3gre_A 225 ECCVLILGTTRG------------IIDIWDIRFNVLIR 250 (437)
T ss_dssp TSCEEEEEETTS------------CEEEEETTTTEEEE
T ss_pred CCCEEEEEcCCC------------eEEEEEcCCccEEE
Confidence 677788887653 58899988765543
No 302
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=24.90 E-value=2.5e+02 Score=26.06 Aligned_cols=16 Identities=0% Similarity=-0.294 Sum_probs=11.4
Q ss_pred eeEEEE-eCCEEEEEec
Q 013909 171 HLGVVS-DGRYIYIVSG 186 (434)
Q Consensus 171 ~~~~~~-~~~~lyv~GG 186 (434)
.|++++ .+++||..|-
T Consensus 131 ~h~~alt~~G~v~~wG~ 147 (406)
T 4d9s_A 131 SHCLAVTMEGEVQSWGR 147 (406)
T ss_dssp SEEEEEETTSCEEEEEC
T ss_pred hheEEEcCCCcEEEeCC
Confidence 355555 5789999984
No 303
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=24.28 E-value=71 Score=27.36 Aligned_cols=63 Identities=11% Similarity=0.112 Sum_probs=36.6
Q ss_pred ECCEEEEEeccCCCCCceeeEEEEE--CCC-------------CceEecCCCCCCCCceeeEEEE-eCCEEEEEeccCCC
Q 013909 127 IKNLFYVFAGYGSLDYVHSHVDVYN--FTD-------------NKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGP 190 (434)
Q Consensus 127 ~~~~iyv~GG~~~~~~~~~~v~~yd--~~t-------------~~W~~~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~ 190 (434)
.++++|+|-|. ..|+|+ +.+ ..|.-++....| .....+... .++++|+|-|
T Consensus 71 ~~g~~~fFKg~--------~~Wr~~~~~~~~~~~~~~gP~~I~~~w~gLp~~~~p-~~IDAA~~~~~~~k~yfFkG---- 137 (227)
T 3lp9_A 71 ENNEAFIFYEN--------FCALIDYAPHSKKDKIILGPKKIADVFPFFEGTVFE-SGIDAAYRSTRGKEVYLFKG---- 137 (227)
T ss_dssp STTEEEEEETT--------EEEEEECCTTTCCCEEEEEEEEHHHHSGGGTTSTTT-TCCSEEEECSSTTEEEEEET----
T ss_pred CCCEEEEEeCC--------EEEEEeCCCCccccccccCceEHhhhcCCCCCccCC-CcccEEEEECCCCEEEEEEC----
Confidence 58899999773 378888 321 113322211001 122333332 3689999987
Q ss_pred CCCCCCceeEEEECCCCc
Q 013909 191 QCRGPTSRTFVLDSETRK 208 (434)
Q Consensus 191 ~~~~~~~~~~~yd~~t~~ 208 (434)
+.+|+||..+++
T Consensus 138 ------~~yw~~d~~~~~ 149 (227)
T 3lp9_A 138 ------DQYARIDYGSNS 149 (227)
T ss_dssp ------TEEEEEETTTTE
T ss_pred ------CEEEEEeCCCcc
Confidence 678999987653
No 304
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=24.26 E-value=6.2e+02 Score=26.34 Aligned_cols=22 Identities=5% Similarity=-0.008 Sum_probs=14.5
Q ss_pred EEEEEcCcCCCCCCccceeeeccEEEEECCCCceE
Q 013909 349 SIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWS 383 (434)
Q Consensus 349 ~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 383 (434)
.+++.|+.+ ..+ ++|+++.+-.
T Consensus 165 ~~l~~g~~d------------g~v-lWd~~~~~~~ 186 (902)
T 2oaj_A 165 GTVLISYEY------------VTL-TYSLVENEIK 186 (902)
T ss_dssp EEEEEECSS------------CEE-EEETTTTEEE
T ss_pred CEEEEEeCC------------CcE-EEECCCCceE
Confidence 567777644 257 8898887643
No 305
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=23.76 E-value=5.4e+02 Score=25.49 Aligned_cols=52 Identities=15% Similarity=0.302 Sum_probs=35.0
Q ss_pred CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEE----ECCEEEEEcCC
Q 013909 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQL----WRGRLHVMGGS 237 (434)
Q Consensus 178 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~----~~~~iyv~GG~ 237 (434)
+.++||--. ....+.+.|+.+.+-..+-.+|....-|.++. -.+++|+.+..
T Consensus 101 G~~lfVnd~--------~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~ 156 (595)
T 1fwx_A 101 GRFLFMNDK--------ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGED 156 (595)
T ss_dssp EEEEEEEET--------TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECS
T ss_pred CCEEEEEcC--------CCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEeccc
Confidence 457888321 24679999999988766556776666666664 35678777643
No 306
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=23.26 E-value=4.2e+02 Score=24.04 Aligned_cols=55 Identities=18% Similarity=0.100 Sum_probs=30.9
Q ss_pred EECCEEEEEcCcCCCCCCccceeeeccEEEEECCCCceEEe---ccCCC---ceeeeeeEE----ECCEEEEEccccC
Q 013909 345 IVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVI---GKLPY---RIKTTLTGF----WDGWLYFTSGQRD 412 (434)
Q Consensus 345 ~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~---~~lp~---~r~~~~~~~----~~~~l~v~GG~~~ 412 (434)
-.+|+++++.-.. +.++++-...+ |+.. +..|. +....+.+. .+++||++.++..
T Consensus 242 ~~~G~vllV~~~~------------~~~~~l~S~Dg-W~sa~~~g~~~~~~~~~g~tt~t~~~~~~~~~iYvv~~~f~ 306 (334)
T 2p9w_A 242 PVGNESVLVGARA------------PYAISFRSWDN-WKSANIKKTKRSELQNSGFTAVADYYQGSEQGLYAVSAFFD 306 (334)
T ss_dssp EETTEEEEEEEET------------TEEEEEECSST-TSEEEEEEEECGGGGSSCEEEEEEEEETTEEEEEEEECCGG
T ss_pred ccCCEEEEEEcCC------------CCEEEEECCCC-cceeEEeeeecCccccCceeEEEEeccccCCeEEEEeeecC
Confidence 3688886665421 12344444444 9764 22333 333344444 5789999987665
No 307
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=23.08 E-value=4.9e+02 Score=26.41 Aligned_cols=154 Identities=12% Similarity=0.110 Sum_probs=74.0
Q ss_pred CceeEEEECCC--CceEecCCCCCCcccceEEEECCEEEEEcCCCCCC---CCCCcceEEEEeeccccc---cCceEE-c
Q 013909 196 TSRTFVLDSET--RKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENR---HTPGLEHWSIAVKDGKAL---EKAWRT-E 266 (434)
Q Consensus 196 ~~~~~~yd~~t--~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~~~~~~~~~~~~---~~~W~~-~ 266 (434)
.+.++..|... .+|.++ .+|. ...-....++++|+....+-.. ..+.......++....+. ...|+. +
T Consensus 268 ~~~~~~~~~~~~~~~~~~l-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 344 (711)
T 4hvt_A 268 NYDNYILDTKYKNLKLQKI-NMPS--DATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILF 344 (711)
T ss_dssp CEEEEEEECSSSSCEEEEC-CSCT--TCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEE
T ss_pred ceeEEEEcCCCCCCcceEe-ecCC--cceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEE
Confidence 37778887653 568777 3332 2222456799999986443100 011112222221111111 357887 4
Q ss_pred cCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceeeCcEEEeC-CCCCeEEc--CCCCCCCCccceeE
Q 013909 267 IPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVL--PPMPKPNSHIECAW 343 (434)
Q Consensus 267 ~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~--~~~p~~r~~~~~~~ 343 (434)
++-+.... -.+...++.+++..-.++ ...++.+| .+.+|+.. .++|.. .. +..
T Consensus 345 ~~~~~~~l-~~~~~~~~~l~~~~~~~~--------------------~~~l~~~~~~~g~~~~~~~i~lp~~-~~--~~~ 400 (711)
T 4hvt_A 345 TPTANEVF-NFISTTKDRVFLATYDNV--------------------VAKVVTFTLENEQWTKPVVLKLPYQ-NA--IFG 400 (711)
T ss_dssp CCCTTEEE-EEEEECSSCEEEEEEETT--------------------EEEEEEECEETTEECCCEEECCCST-TC--EEE
T ss_pred CCCCCCeE-EEEEEECCEEEEEEEECC--------------------EEEEEEEECCCCceEEEeccCCCCC-eE--EEE
Confidence 44332221 144455777776654332 23588888 56666432 234422 11 111
Q ss_pred EE--E-CCEEEE-EcCcCCCCCCccceeeeccEEEEECCCCceEEecc
Q 013909 344 VI--V-NNSIII-TGGTTEKHPMTKRMILVGEVFQFHLDSLTWSVIGK 387 (434)
Q Consensus 344 ~~--~-~~~i~v-~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 387 (434)
.. . ++.+++ +.+.... .+++.||+. .+++.+..
T Consensus 401 ~~~~~~~~~~~~~~ss~~~P----------~~~~~~d~~-~~~~~l~~ 437 (711)
T 4hvt_A 401 MSSYEEEEEALITIENSIVP----------PTIYLWVKT-HELKIIRK 437 (711)
T ss_dssp EECCTTCSCEEEEEECSSSC----------CEEEEECTT-SCEEEEEC
T ss_pred EeecCcCCEEEEEEecCCCC----------CEEEEEeCC-CcEEEEec
Confidence 11 1 233333 3443322 378889987 77776643
No 308
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=22.50 E-value=5.7e+02 Score=25.29 Aligned_cols=196 Identities=12% Similarity=0.078 Sum_probs=98.2
Q ss_pred eEEEEECCCCceEecCCCCCCCCceeeEEEEe--CCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccce
Q 013909 146 HVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPA 223 (434)
Q Consensus 146 ~v~~yd~~t~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~ 223 (434)
.+..+++.+...+.+. +|.+.-....+++.. +++||+.-- ....++++++.....+.+..-...+. ..
T Consensus 327 ~i~~i~l~~~~~~~~~-~~~~~l~~~~~ld~d~~~~~ly~sD~--------~~~~I~r~~~~g~~~~~v~~~~~~~p-~G 396 (619)
T 3s94_A 327 DLRRISLDTPDFTDIV-LQLEDIRHAIAIDYDPVEGYIYWTDD--------EVRAIRRSFIDGSGSQFVVTAQIAHP-DG 396 (619)
T ss_dssp CEEEEESSSTTCCCEE-CCCSCCSSEEEEEEETTTTEEEEEET--------TTTEEEEEETTSCSCEEEECSSCSCC-CE
T ss_pred ceEEEecCCCccceeE-EeccccCccEEEEEEcCCCeEEEEeC--------CCCeEEEEEcCCCccEEEEECCCCCc-Cc
Confidence 3566666655443221 221112333445554 689999721 24678999998766665532221111 13
Q ss_pred EEE--ECCEEEEEcCCCCCCCCCCcceEEEEeeccccccCceEEcc--CCCCCCCceeEEEE--CCEEEEEc-CCCCCCC
Q 013909 224 TQL--WRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEI--PIPRGGPHRACFVF--NDRLFVVG-GQEGDFM 296 (434)
Q Consensus 224 ~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~p~~~~~~~~~~~--~~~iyv~G-G~~~~~~ 296 (434)
+++ .++.||+.-.. ...+++.+ .....-+.+. .+..++ ++++. ++.||+.- |..
T Consensus 397 lAvD~~~~~lY~tD~~-----~~~I~v~~-------~~G~~~~~l~~~~l~~P~---~iavdp~~G~ly~tD~g~~---- 457 (619)
T 3s94_A 397 IAVDWVARNLYWTDTG-----TDRIEVTR-------LNGTMRKILISEDLEEPR---AIVLDPMVGYMYWTDWGEI---- 457 (619)
T ss_dssp EEEETTTTEEEEEETT-----TTEEEEEE-------TTSCSCEEEECTTCCSEE---EEEEETTTTEEEEEECSSS----
T ss_pred eEEecccCcEEEEeCC-----CCcEEEEe-------CCCCeEEEEEECCCCCee---eEEEEcCCCcEEEecCCCC----
Confidence 333 47899998321 22333333 1122112222 122222 44444 58999875 221
Q ss_pred CCCCCCccccccccceeeCcEEEeC-CCCCeEEc-C-CCCCCCCccceeEEEE--CCEEEEEcCcCCCCCCccceeeecc
Q 013909 297 AKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVL-P-PMPKPNSHIECAWVIV--NNSIIITGGTTEKHPMTKRMILVGE 371 (434)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~-~-~~p~~r~~~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~ 371 (434)
..+++.+ +...-+.+ . .+..|. ++++- +++||+.-... +.
T Consensus 458 ------------------~~I~r~~~dG~~~~~l~~~~l~~P~-----GlalD~~~~~LY~aD~~~------------~~ 502 (619)
T 3s94_A 458 ------------------PKIERAALDGSDRVVLVNTSLGWPN-----GLALDYDEGKIYWGDAKT------------DK 502 (619)
T ss_dssp ------------------CEEEEEETTSCSCEEEECSSCSCEE-----EEEEETTTTEEEEEETTT------------TE
T ss_pred ------------------CEEEEEccCCCccEEEEeCCCCCCe-----eeEEcccCCEEEEEECCC------------CE
Confidence 1366665 33222222 2 233221 22333 68999985422 36
Q ss_pred EEEEECCCCceEEec--cCCCceeeeeeEEECCEEEEEc
Q 013909 372 VFQFHLDSLTWSVIG--KLPYRIKTTLTGFWDGWLYFTS 408 (434)
Q Consensus 372 v~~yd~~~~~W~~~~--~lp~~r~~~~~~~~~~~l~v~G 408 (434)
++.++++...=+.+. .++.| .++++.++.||+.=
T Consensus 503 I~~~~~dG~~~~~~~~~~l~~P---~glav~~~~ly~tD 538 (619)
T 3s94_A 503 IEVMNTDGTGRRVLVEDKIPHI---FGFTLLGDYVYWTD 538 (619)
T ss_dssp EEEEESSSCCCEEEEECCCCSS---CCEEEETTEEEEEC
T ss_pred EEEEecCCCceEEEeccCCCCc---EEEEEECCEEEEee
Confidence 889998765544432 24433 35667788888874
No 309
>4fj6_A Glycoside hydrolase family 33, candidate sialidas; bacterial neuraminidase repeat; HET: MSE GOL; 1.90A {Parabacteroides distasonis}
Probab=22.31 E-value=4.2e+02 Score=25.77 Aligned_cols=159 Identities=11% Similarity=0.054 Sum_probs=0.0
Q ss_pred eeEEEEeCCEEEEEeccCCCCCCCCCceeEEEECCCCceEecCCCCCCcccceEEEE-CCEEEEEcCCCCCCCCCCcceE
Q 013909 171 HLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW-RGRLHVMGGSKENRHTPGLEHW 249 (434)
Q Consensus 171 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~ 249 (434)
++++..-+++|++-.-...... .....+..-|-.-.+|+....++.....++++.. +++|++.--............-
T Consensus 328 G~GI~l~dGrLv~P~~~~~~~g-~~~s~i~~S~D~G~TW~~~~~~~~~~~e~~vve~~dG~L~~~~R~~~~g~r~v~~S~ 406 (523)
T 4fj6_A 328 GRGITMQDGTLVFPIQFIDATR-VPNAGIMYSKDRGKTWHLHNLARTNTTEAQVAEVEPGVLMLNMRDNRGGSRAVATTK 406 (523)
T ss_dssp EECEECTTSCEEEEEEEECTTS-CEEEEEEEESSTTSSCEECCCSEETEEEEEEEEEETTEEEEEEEETTCSBCEEEEES
T ss_pred CcceEEeCCeEEEEEEEEcCCC-CEEEEEEEECCCCCeEEECCCCCccccCCEEEEecCCEEEEEEEecCCCcEEEEEEC
Q ss_pred EEEeeccccccCceEEcc----CCCCCCCceeEEEEC--------CEEEEEcCCCCCCCCCCCCCccccccccceeeCcE
Q 013909 250 SIAVKDGKALEKAWRTEI----PIPRGGPHRACFVFN--------DRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDV 317 (434)
Q Consensus 250 ~~~~~~~~~~~~~W~~~~----~~p~~~~~~~~~~~~--------~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v 317 (434)
| ...+|++.. .+|.+.+..++..+. ..+++..-.+...+ ..+.-.
T Consensus 407 D--------~G~TWt~~~~~~~~L~~P~c~~Sii~~~~~~~~~g~~~lL~snp~~~~~R---------------~~l~v~ 463 (523)
T 4fj6_A 407 D--------LGKTWTEHPSSRSALQESVCMASLIKVNAKDNITGKDLLLFSNPNTTKGR---------------NHITIK 463 (523)
T ss_dssp S--------TTSSCEECTTTTTSSBCSSCCCEEEEECGGGSTTCSCEEEEEEECCSSSS---------------CCEEEE
T ss_pred C--------CCCccCcCcCccccCCCCCcccEEEEEecccCCCCCcEEEEEccCCCCcc---------------ccceEE
Q ss_pred EEeCCCCCeEEcCCC---CCCCCccceeEEEECCEEEEE
Q 013909 318 YMLDDEMKWKVLPPM---PKPNSHIECAWVIVNNSIIIT 353 (434)
Q Consensus 318 ~~yd~~~~W~~~~~~---p~~r~~~~~~~~~~~~~i~v~ 353 (434)
..+|...+|.....+ ..+.....+-+..-+++|.++
T Consensus 464 ~S~D~G~TW~~~~~v~~~~~~~~~Ys~l~~~~dG~i~il 502 (523)
T 4fj6_A 464 ASLDGGLTWPTEHQVLLDEAEGWGYSCLSMIDKETVGIF 502 (523)
T ss_dssp EESSTTSCCCGGGEEEEECSCCCCCEEEEECSSSEEEEE
T ss_pred EeCCCCCCCccCceEEEcCCCCcccceEEEcCCCEEEEE
No 310
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=22.25 E-value=4.7e+02 Score=24.14 Aligned_cols=16 Identities=6% Similarity=0.235 Sum_probs=11.9
Q ss_pred ceeEEEE-CCEEEEEec
Q 013909 121 DGAAIQI-KNLFYVFAG 136 (434)
Q Consensus 121 ~~~~~~~-~~~iyv~GG 136 (434)
.|++++. ++.||.+|-
T Consensus 137 ~hs~al~~~G~v~~wG~ 153 (423)
T 3mvd_K 137 SHSACLLEDGRVFAWGS 153 (423)
T ss_dssp SEEEEEETTSCEEEEEC
T ss_pred CeEEEEeCCCeEEEEeC
Confidence 4666665 779999994
Done!