Query 013910
Match_columns 434
No_of_seqs 136 out of 1845
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 19:23:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013910.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013910hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 5.8E-42 2E-46 343.4 31.0 368 21-426 75-480 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 3.1E-27 1.1E-31 233.4 27.2 337 22-409 83-434 (451)
3 3o7q_A L-fucose-proton symport 99.9 1.7E-24 5.8E-29 213.1 34.2 311 22-402 82-426 (438)
4 4aps_A DI-OR tripeptide H+ sym 99.9 1.8E-23 6.3E-28 209.0 20.6 365 21-415 74-478 (491)
5 2gfp_A EMRD, multidrug resista 99.9 5.3E-22 1.8E-26 191.4 11.0 124 21-144 55-180 (375)
6 2cfq_A Lactose permease; trans 99.8 8.1E-21 2.8E-25 186.1 15.2 335 23-417 65-408 (417)
7 2xut_A Proton/peptide symporte 99.8 8.4E-20 2.9E-24 184.0 17.6 117 21-137 74-196 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.3 2.5E-10 8.6E-15 111.9 19.8 140 275-414 68-212 (451)
9 3o7q_A L-fucose-proton symport 99.2 3.1E-09 1E-13 103.8 21.2 109 274-382 66-177 (438)
10 4aps_A DI-OR tripeptide H+ sym 99.2 1.6E-09 5.5E-14 107.7 19.4 139 274-412 59-200 (491)
11 2gfp_A EMRD, multidrug resista 99.0 2.5E-09 8.5E-14 102.3 14.1 142 274-415 40-181 (375)
12 2xut_A Proton/peptide symporte 99.0 1.9E-08 6.4E-13 100.8 17.6 136 276-411 61-201 (524)
13 2cfq_A Lactose permease; trans 98.6 2.8E-08 9.5E-13 96.7 6.5 125 19-143 277-404 (417)
14 4gc0_A D-xylose-proton symport 98.6 1.4E-06 4.7E-11 86.2 18.2 103 279-381 65-185 (491)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=5.8e-42 Score=343.42 Aligned_cols=368 Identities=21% Similarity=0.262 Sum_probs=257.1
Q ss_pred hhhhHhhhcchHHHHHHHHHHHHHHHHHh------------------hcccHHHHHHHHHHHHhcCCCch-hhhhhhhhc
Q 013910 21 EPLYFIFAFSRMSILGGALVTFVAGLLSA------------------FSPNYISLLILRGLAGAGLGSGH-VFFSWFMEF 81 (434)
Q Consensus 21 ~~~~~~~~GRr~~l~~~~~~~~i~~~~~~------------------~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~ 81 (434)
...+.||+|||++++++.+++.+++++++ +++|+.+++++|+++|+|.|+.. +...|++|+
T Consensus 75 ~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~ 154 (491)
T 4gc0_A 75 GGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAEL 154 (491)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35689999999999999999999999988 47899999999999999998875 556789999
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhc--------ccchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcCChH
Q 013910 82 VPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMP--------ILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRIT 153 (434)
Q Consensus 82 ~p~~~Rg~~~~~~~~~~~~G~~l~~~l~~~~~~--------~~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~~~~ 153 (434)
+|+++||+..++.+.++..|.++++.+++.... ..+||+++.+..++.++..+..+++||||+|+..|+|.|
T Consensus 155 ~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~ 234 (491)
T 4gc0_A 155 APAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQE 234 (491)
T ss_dssp SCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHH
T ss_pred CCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchh
Confidence 999999999999999999999999888776532 357999999999999998888899999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHH
Q 013910 154 DAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYF 233 (434)
Q Consensus 154 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 233 (434)
|+.+.+++..+.+..+ ++.. +..+ ..++. ++. ......+..+. .........+
T Consensus 235 ~a~~~l~~~~~~~~~~---------------~~~~--~~~~----~~~~~---~~~-~~~~~~~~~~~--~~~~~~~~~~ 287 (491)
T 4gc0_A 235 QAEGILRKIMGNTLAT---------------QAVQ--EIKH----SLDHG---RKT-GGRLLMFGVGV--IVIGVMLSIF 287 (491)
T ss_dssp HHHHHHHHHHHHHHHH---------------HHHH--HHHH----HHHHH---HHH-TTHHHHSCCTH--HHHHHHHHHH
T ss_pred HHHHhHHHhcCCchhH---------------HHHH--HHHH----HHHhh---hhh-hhHHHHhcccH--HHHHHHHHHH
Confidence 9999999876532110 0000 0000 00000 000 01111121111 1111122222
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 013910 234 GNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFL 313 (434)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~ 313 (434)
.+...++.+..+.+.+.... +...........+.++..+++.++++++.||+|||+.++.+...+.+.+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~ 356 (491)
T 4gc0_A 288 QQFVGINVVLYYAPEVFKTL-----------GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGM 356 (491)
T ss_dssp HHHTCHHHHHHHHHHHHHHS-----------SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHhcchHHHHhc-----------CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHH
Confidence 22222222222222222110 1112233445566678889999999999999999999988776666554
Q ss_pred HHHHh--h-h-hhHHHH-HHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhh----
Q 013910 314 LPLVT--L-Q-SNILLT-ALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS---- 384 (434)
Q Consensus 314 ~~~~~--~-~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~---- 384 (434)
+.+.. . . ...... ........+..+..++.|.+.+|++|++.|+++.|++++++++++++.+++.+.+.+.
T Consensus 357 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~ 436 (491)
T 4gc0_A 357 FSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLV 436 (491)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHH
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44322 1 1 112211 1222222334455678899999999999999999999999999999999888866442
Q ss_pred --cchhhHHHHHHHHHHHHHHHHHhcccccCCcccccccccccC
Q 013910 385 --CHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTIDGVSN 426 (434)
Q Consensus 385 --~g~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~~e~~~~~~~ 426 (434)
.+....+++++++++++.++.+++.||||||++||+++.-++
T Consensus 437 ~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~ 480 (491)
T 4gc0_A 437 AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEP 480 (491)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC-
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCC
Confidence 223456788999999999999999999999999998765444
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.96 E-value=3.1e-27 Score=233.44 Aligned_cols=337 Identities=15% Similarity=0.185 Sum_probs=222.2
Q ss_pred hhhHhhhcchHHHHHHHHHHHHHHHHHhh----cccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHH
Q 013910 22 PLYFIFAFSRMSILGGALVTFVAGLLSAF----SPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFST 96 (434)
Q Consensus 22 ~~~~~~~GRr~~l~~~~~~~~i~~~~~~~----~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~ 96 (434)
..+.||+|||+.+..+.+++.++.++.++ ++|+..++++|++.|++.|... ....++.|++|+++|++..++.+.
T Consensus 83 G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 162 (451)
T 1pw4_A 83 GSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNC 162 (451)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHH
Confidence 46899999999999999999999999999 9999999999999999988654 556788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHH-HHHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCC
Q 013910 97 FWTFGSVSEAALAWIVMPILT-WRWLLALSAIPAFVLL-IFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGN 174 (434)
Q Consensus 97 ~~~~G~~l~~~l~~~~~~~~~-Wr~~f~~~~i~~~l~~-~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~ 174 (434)
+..+|.++++.++..+.+..+ ||+.|++.++..++.. +..+++||+|+....+.+.+ .
T Consensus 163 ~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~- 222 (451)
T 1pw4_A 163 AHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEE-------------------Y- 222 (451)
T ss_dssp HHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTT-------------------T-
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhh-------------------h-
Confidence 999999999999887777777 9999999988777654 45567899987421110000 0
Q ss_pred ccCCCCCCCcccccCCCCccccccccccccccccccch--hhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013910 175 LTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSS--FLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGS 252 (434)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (434)
. .+ ++ .+.+++ +++ +...++ .+..++.+.. .......+.....+++...+.+.+...
T Consensus 223 -~----~~-~~--~~~~~~------~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (451)
T 1pw4_A 223 -K----ND-YP--DDYNEK------AEQ----ELTAKQIFMQYVLPNKLL---WYIAIANVFVYLLRYGILDWSPTYLKE 281 (451)
T ss_dssp -C----CC--------------------------CCTHHHHHHTSSCHHH---HHHHHHHHHHHHHHHHHHHHHHHHBTT
T ss_pred -c----cc-cc--ccchhh------hhc----ccccccchHHHHHcCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 00 000000 000 000011 1223322211 122222233333344444444433321
Q ss_pred cCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhh--chhHHHHHHHHHHH-HHHHHHHhhh--hhHHHHH
Q 013910 253 QSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRV--GRKLSMTIMFIFVC-IFLLPLVTLQ--SNILLTA 327 (434)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~--gRR~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~ 327 (434)
. .+.+............++.+++.++.+++.||+ |||+.+..+..+.. +.++.+.... +.+....
T Consensus 282 ~----------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (451)
T 1pw4_A 282 V----------KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMI 351 (451)
T ss_dssp B----------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHH
T ss_pred h----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHH
Confidence 1 011112222334455677889999999999999 99998877665554 3333222221 2222222
Q ss_pred HHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhH-hHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHH
Q 013910 328 LLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRI-GGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVIL 406 (434)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~i-g~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~ 406 (434)
......++..+..+..+.+..|.+|++.|+++.|+.+.+.++ ++.++|.+.+.+.+..+....+++.+++++++.+..+
T Consensus 352 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 431 (451)
T 1pw4_A 352 CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 431 (451)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 222222233344566678899999999999999999999999 9999999999988877766677777777777777666
Q ss_pred hcc
Q 013910 407 LIP 409 (434)
Q Consensus 407 ~~~ 409 (434)
++.
T Consensus 432 ~~~ 434 (451)
T 1pw4_A 432 VVM 434 (451)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.94 E-value=1.7e-24 Score=213.05 Aligned_cols=311 Identities=13% Similarity=0.066 Sum_probs=203.3
Q ss_pred hhhHhhhcchHHHHHHHHHHHHHHHHH---hhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHH
Q 013910 22 PLYFIFAFSRMSILGGALVTFVAGLLS---AFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTF 97 (434)
Q Consensus 22 ~~~~~~~GRr~~l~~~~~~~~i~~~~~---~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~ 97 (434)
..+.||+|||+.+..+.+++.++.++. ++++|+..++++|++.|++.|... ....++.|+.|+++|++..++.+.+
T Consensus 82 G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 161 (438)
T 3o7q_A 82 GILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTF 161 (438)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHH
Confidence 469999999999999999999999999 889999999999999999988764 5567889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-cccc-------------------------hHHHHHHHHHHHHHHHHHHHh--cCCChhHHhhc
Q 013910 98 WTFGSVSEAALAWIVM-PILT-------------------------WRWLLALSAIPAFVLLIFIVF--MPESPRYLCTK 149 (434)
Q Consensus 98 ~~~G~~l~~~l~~~~~-~~~~-------------------------Wr~~f~~~~i~~~l~~~~~~~--lpESp~~l~~~ 149 (434)
..+|.++++.++..+. +..+ ||+.|.+.++..++..+..++ .||+++..
T Consensus 162 ~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--- 238 (438)
T 3o7q_A 162 NSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN--- 238 (438)
T ss_dssp HHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---
Confidence 9999999999988776 4433 999998877766655444333 45544200
Q ss_pred CChHHHHHHHHHHHHHcCCCCCCCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHH
Q 013910 150 GRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLW 229 (434)
Q Consensus 150 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 229 (434)
+++ .++.. ....++.+++.+......+..
T Consensus 239 ----------------------------------~~~---~~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 267 (438)
T 3o7q_A 239 ----------------------------------HSD---AKQGS--------------FSASLSRLARIRHWRWAVLAQ 267 (438)
T ss_dssp ----------------------------------CCC---SSTTS--------------HHHHHHHHTTCSHHHHHHHHH
T ss_pred ----------------------------------ccc---ccccc--------------hhhhHHHHHhChHHHHHHHHH
Confidence 000 00000 001222333333222222222
Q ss_pred HHHHHHHHHHHHHHHHHHhh-hcccCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHH
Q 013910 230 VLYFGNSFVYYGIVLLASEL-SGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIF 308 (434)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~ 308 (434)
.. ....+++...+.+.+ .... .+.+............+.+++|.+++++++||+|||+.+..+.++
T Consensus 268 ~~---~~~~~~~~~~~~~~~~~~~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~ 334 (438)
T 3o7q_A 268 FC---YVGAQTACWSYLIRYAVEEI----------PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALI 334 (438)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHS----------TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHHHHHhhhcc----------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 21 122222222222222 1110 011111222233445677888999999999999999999888777
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcc-h
Q 013910 309 VCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-Q 387 (434)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g-~ 387 (434)
..+..+......+....... ....++....++..+.+..|.+|++ |+++.++.. .+.+++.++|.+.+.+.+..| .
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~ 411 (438)
T 3o7q_A 335 AMALCLISAFAGGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNI 411 (438)
T ss_dssp HHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcch
Confidence 66655544443332222222 2222333445677888889999988 889988877 788999999999999988876 5
Q ss_pred hhHHHHHHHHHHHHH
Q 013910 388 TAAILLLEALIVLSV 402 (434)
Q Consensus 388 ~~~~~~~~~~~~i~~ 402 (434)
...+.+.+++.++..
T Consensus 412 ~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 412 PTAELIPALCFAVIF 426 (438)
T ss_dssp GGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555444444433
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.91 E-value=1.8e-23 Score=208.99 Aligned_cols=365 Identities=12% Similarity=0.011 Sum_probs=196.4
Q ss_pred hhhhHhh-hcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCc--chhHHHHHHH
Q 013910 21 EPLYFIF-AFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSN--RGKWMVVFST 96 (434)
Q Consensus 21 ~~~~~~~-~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~--Rg~~~~~~~~ 96 (434)
...+.|| +|||+++..+.++..++.++.++++|+..++++|++.|+|.|... ....++.|++|+++ |+...+.++.
T Consensus 74 ~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 153 (491)
T 4aps_A 74 GGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVF 153 (491)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHH
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHH
Confidence 3468999 899999999999999999999999999999999999999988754 55678899999999 7778888999
Q ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhc-CCCh----hHHhhcCChHHHHHHHHH----------
Q 013910 97 FWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFM-PESP----RYLCTKGRITDAHNILDK---------- 161 (434)
Q Consensus 97 ~~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~~~l-pESp----~~l~~~~~~~~a~~~l~~---------- 161 (434)
+..+|..+++.++..+.+..+||+.|++.++..++..+..... |+.. +-...+.+.++.++..++
T Consensus 154 ~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~ 233 (491)
T 4aps_A 154 GINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIA 233 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHH
Confidence 9999999999999888888899999999877666554433322 2110 000011122333332222
Q ss_pred ---HHHHcCCCCCCCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHH
Q 013910 162 ---IAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFV 238 (434)
Q Consensus 162 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 238 (434)
.....+.. +.++.....................++. .......++..+ ....+...+.....
T Consensus 234 ~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~ 298 (491)
T 4aps_A 234 IIVVMNLVGWN------------SLPAYINLLTIVAIAIPVFYFAWMISSV--KVTSTEHLRVVS-YIPLFIAAVLFWAI 298 (491)
T ss_dssp HHHHHHHHSSC------------CTTHHHHHHHHHHHHHHHHHHHHHC--------------CTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhccCc------------ccccchhhhhHHHHHHHHHHHHHHhhcc--cccHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 00011100 0000000000000000000000000000 000000000000 01111111111111
Q ss_pred HHH----HHHHHHhhhcccCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHH-----HHHHHH
Q 013910 239 YYG----IVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMT-----IMFIFV 309 (434)
Q Consensus 239 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~-----~~~~~~ 309 (434)
+.. +..+....... +. .. .. .......+..+++..+.+++.||+|||+... .+..+.
T Consensus 299 ~~~~~~~~~~~~~~~~~~-~~----------~~-~~--~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~ 364 (491)
T 4aps_A 299 EEQGSVVLATFAAERVDS-SW----------FP-VS--WFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFA 364 (491)
T ss_dssp HGGGGTHHHHHHHHSCCC-SS----------SC-SG--GGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHhcc-Cc----------cC-HH--HHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 111 11111111100 00 00 00 0112333455667778889999999986543 444433
Q ss_pred HHHHHHHHhhh---------hhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHH
Q 013910 310 CIFLLPLVTLQ---------SNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVG 380 (434)
Q Consensus 310 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~ 380 (434)
++....+.... +.+..........+......+..+.+..|.+|++.|+++.|+.+...++|+.++|.+.+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~ 444 (491)
T 4aps_A 365 GLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTL 444 (491)
T ss_dssp HHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322222110 112222221121122223356678899999999999999999999999999999998876
Q ss_pred HhhhcchhhHHHHHHHHHHHHHHHHHhcccccCCc
Q 013910 381 LVTSCHQTAAILLLEALIVLSVVVILLIPFETKGK 415 (434)
Q Consensus 381 l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~~~ 415 (434)
+.+. +....+.+++++++++.++.+++.++++++
T Consensus 445 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 445 YNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp GGGS-STTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred Hhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5543 444567777888888888888887777655
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.86 E-value=5.3e-22 Score=191.37 Aligned_cols=124 Identities=13% Similarity=0.110 Sum_probs=109.3
Q ss_pred hhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHHH
Q 013910 21 EPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWT 99 (434)
Q Consensus 21 ~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~ 99 (434)
.+.+.||+|||+.+..+..+..++.++.++++|+..+++.|++.|++.+... ....++.|+.|+++|++..+..+.+..
T Consensus 55 ~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (375)
T 2gfp_A 55 YGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGIL 134 (375)
T ss_dssp HHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHH
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 3469999999999999999999999999999999999999999999988654 456788999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH-HHHhcCCChh
Q 013910 100 FGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLI-FIVFMPESPR 144 (434)
Q Consensus 100 ~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~-~~~~lpESp~ 144 (434)
+|.++++.++..+.+..+||+.|.+.++..++..+ ..+.+||+|+
T Consensus 135 ~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 135 VSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred HHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence 99999999998888878999999998887776654 4556788764
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.85 E-value=8.1e-21 Score=186.05 Aligned_cols=335 Identities=13% Similarity=0.060 Sum_probs=181.6
Q ss_pred hhHhhhcchHHHHHHHHHHHHHH---HHHhhcccHH-HHHHHHHHHHhcCCCch-hhhhhhhhccCC--CcchhHHHHHH
Q 013910 23 LYFIFAFSRMSILGGALVTFVAG---LLSAFSPNYI-SLLILRGLAGAGLGSGH-VFFSWFMEFVPP--SNRGKWMVVFS 95 (434)
Q Consensus 23 ~~~~~~GRr~~l~~~~~~~~i~~---~~~~~~~~~~-~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~--~~Rg~~~~~~~ 95 (434)
.++||+|||+.+..+..++.++. ....+++... .++.+|++.|++.|... .......++.++ ++||...+..+
T Consensus 65 ~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 144 (417)
T 2cfq_A 65 LLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRAR 144 (417)
T ss_dssp HHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHS
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHH
Confidence 59999999999999887765432 1112222211 24556777776655432 112222233332 35677777777
Q ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCc
Q 013910 96 TFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNL 175 (434)
Q Consensus 96 ~~~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 175 (434)
.+..+|..+++.++..+.+ .+||+.|++.+++.++..+..++.||+|.. +.+.+
T Consensus 145 ~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---------------------- 198 (417)
T 2cfq_A 145 MFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPS---SATVA---------------------- 198 (417)
T ss_dssp SSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCSC---SSCSS----------------------
T ss_pred HHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccccc---ccccc----------------------
Confidence 7778888888888776654 589999998877765554444444433210 00000
Q ss_pred cCCCCCCCcccccCCCCccccccccccccccccccchhhhccC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 013910 176 TSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS-PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQS 254 (434)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (434)
+.++ .+++ +...+.....++ ++.+... +. .+.....++....+.+.+.....
T Consensus 199 ------~~~~----~~~~-------------~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~ 251 (417)
T 2cfq_A 199 ------NAVG----ANHS-------------AFSLKLALELFRQPKLWFLS-LY---VIGVSCTYDVFDQQFANFFTSFF 251 (417)
T ss_dssp ------SSSS----SCCC-------------CCCHHHHHHHTTCHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHTS
T ss_pred ------cccc----cccc-------------cccHHHHHHHhcCCchhhHH-HH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0000 000011222332 3322211 11 11111112211111111110000
Q ss_pred CCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 013910 255 KCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARM 334 (434)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (434)
...............+..+.++++.++.++++||+|||+.+..+..+..+..+......+.+..........+
T Consensus 252 -------~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 324 (417)
T 2cfq_A 252 -------ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMF 324 (417)
T ss_dssp -------SSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHH
T ss_pred -------hccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 0000001111112234445677889999999999999998887766665544433332222222111111111
Q ss_pred HHhhhhhhhhhhcccccCCCchhhHHhHH-HHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 013910 335 FSMGTFIIANIFAPEIYPTSMRSTGAGVA-YAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK 413 (434)
Q Consensus 335 ~~~~~~~~~~~~~~El~P~~~R~~a~gi~-~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~ 413 (434)
+........+.+.+|.+|++.|+++.|+. +..+++|++++|.+.+.+.+..+....+.+.+++++++.+..++..||++
T Consensus 325 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 325 EVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 11122344578999999999999999996 67778999999999998888666556677778888888887777777766
Q ss_pred Cccc
Q 013910 414 GKEL 417 (434)
Q Consensus 414 ~~~~ 417 (434)
..++
T Consensus 405 ~~~~ 408 (417)
T 2cfq_A 405 PLSL 408 (417)
T ss_dssp TTCS
T ss_pred chHH
Confidence 5444
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.83 E-value=8.4e-20 Score=183.97 Aligned_cols=117 Identities=15% Similarity=0.027 Sum_probs=101.3
Q ss_pred hhhhHhhh-cchHHHHHHHHHHHHHHHHHhhcc-cHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHH---H
Q 013910 21 EPLYFIFA-FSRMSILGGALVTFVAGLLSAFSP-NYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVV---F 94 (434)
Q Consensus 21 ~~~~~~~~-GRr~~l~~~~~~~~i~~~~~~~~~-~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~---~ 94 (434)
.+++.||+ |||+.+..+.++..++.++.++++ |+..++++|++.|++.|... ....++.|++|+++|++..+. .
T Consensus 74 ~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 153 (524)
T 2xut_A 74 GGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMF 153 (524)
T ss_dssp HHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHH
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHH
Confidence 34689999 999999999999999999999998 99999999999999988764 556788999999999887766 8
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Q 013910 95 STFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIV 137 (434)
Q Consensus 95 ~~~~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~~ 137 (434)
+.+..+|..+++.++..+.+..+||+.|.+.++..++..+...
T Consensus 154 ~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 154 YFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999988887778999999998887666544443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.26 E-value=2.5e-10 Score=111.94 Aligned_cols=140 Identities=14% Similarity=0.046 Sum_probs=101.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHhhhhhhhhhhcccc
Q 013910 275 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT----LQSNILLTALLSGARMFSMGTFIIANIFAPEI 350 (434)
Q Consensus 275 ~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 350 (434)
.....+...++.+++|.++||+|||+.+..+.++.++..+.... ..+.+......+...++.....+....+.+|.
T Consensus 68 ~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~ 147 (451)
T 1pw4_A 68 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW 147 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHH
Confidence 34455677889999999999999999998888777766555444 33222222222222222333456678899999
Q ss_pred cCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcc-hhhHHHHHHHHHHHHHHHHHhcccccCC
Q 013910 351 YPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-QTAAILLLEALIVLSVVVILLIPFETKG 414 (434)
Q Consensus 351 ~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g-~~~~~~~~~~~~~i~~~~~~~~~~et~~ 414 (434)
+|++.|+++.|+.+....+|.+++|.+.+.+.+..+ ....+++.++++++..+..++..||+..
T Consensus 148 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 148 WSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 999999999999999999999999999888777666 6667777777777777766666667654
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.15 E-value=3.1e-09 Score=103.79 Aligned_cols=109 Identities=13% Similarity=0.045 Sum_probs=79.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccc
Q 013910 274 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPL---VTLQSNILLTALLSGARMFSMGTFIIANIFAPEI 350 (434)
Q Consensus 274 ~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 350 (434)
......+...++.++.|.++||+|||+.+..+.++.++..+.. ....+.+......+...++.....+....+.+|.
T Consensus 66 ~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~ 145 (438)
T 3o7q_A 66 IQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVL 145 (438)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHH
Confidence 3445556778899999999999999999998877777655544 3323222222222222222334456678889999
Q ss_pred cCCCchhhHHhHHHHhhhHhHhhHHHHHHHHh
Q 013910 351 YPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV 382 (434)
Q Consensus 351 ~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~ 382 (434)
+|++.|+.+.|+.+....+|.+++|.+.+.+.
T Consensus 146 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 146 GPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp SCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888777
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.15 E-value=1.6e-09 Score=107.65 Aligned_cols=139 Identities=12% Similarity=0.027 Sum_probs=98.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHh-hchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccC
Q 013910 274 NVFITSFAELPGLLTAALLVDR-VGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYP 352 (434)
Q Consensus 274 ~~~~~~~~~~~g~~~~~~l~dr-~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P 352 (434)
......++..++.+++|+++|| +|||+.+..+.++..+..+......+.+......+...++.....+....+.+|.+|
T Consensus 59 ~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 138 (491)
T 4aps_A 59 IMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYD 138 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcC
Confidence 3345567778899999999999 899999998887777666555443333322222222222333445677889999999
Q ss_pred CCc--hhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhccccc
Q 013910 353 TSM--RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET 412 (434)
Q Consensus 353 ~~~--R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et 412 (434)
++. |+++.++.+....+|..++|.+.+.+.+..+....+.+.++..+++.+..++..|+.
T Consensus 139 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 200 (491)
T 4aps_A 139 EHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKT 200 (491)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 988 778888888999999999999999888776666667776666666666655554443
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.03 E-value=2.5e-09 Score=102.34 Aligned_cols=142 Identities=18% Similarity=0.056 Sum_probs=99.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCC
Q 013910 274 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPT 353 (434)
Q Consensus 274 ~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~ 353 (434)
......+...++.+..|+++||+|||+.+..+..+..+..+......+.+..........++.....+....+.+|.+|+
T Consensus 40 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 119 (375)
T 2gfp_A 40 VMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYER 119 (375)
T ss_dssp HHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCH
Confidence 33455567788899999999999999998887777666555444333322222222222222233456677888999999
Q ss_pred CchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCCc
Q 013910 354 SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGK 415 (434)
Q Consensus 354 ~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~~~ 415 (434)
+.|+++.++.+....+|..++|.+.+.+.+..+....+.+.++..++..+...+..||++.+
T Consensus 120 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 120 TQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp SSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 99999999999999999999999988776655555566666776666666566666777654
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.95 E-value=1.9e-08 Score=100.81 Aligned_cols=136 Identities=15% Similarity=0.079 Sum_probs=92.8
Q ss_pred HHHHhhhhhHHHHHHHHHHhh-chhHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHhhhhhhhhhhcccccCC
Q 013910 276 FITSFAELPGLLTAALLVDRV-GRKLSMTIMFIFVCIFLLPLVTLQ-SNILLTALLSGARMFSMGTFIIANIFAPEIYPT 353 (434)
Q Consensus 276 ~~~~~~~~~g~~~~~~l~dr~-gRR~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~ 353 (434)
....+...++.+++|+++||+ |||+.+..+.++..+..+...... +.+......+...++.....+....+.+|.+|+
T Consensus 61 ~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 140 (524)
T 2xut_A 61 HSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ 140 (524)
T ss_dssp HHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCST
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCc
Confidence 344566778899999999999 999999888777666555444433 333222222222222233456778889999999
Q ss_pred CchhhHHhH---HHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccc
Q 013910 354 SMRSTGAGV---AYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFE 411 (434)
Q Consensus 354 ~~R~~a~gi---~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e 411 (434)
+.|+++.+. .+....+|+.++|.+.+.+.+..+....+.+.+++.+++.+..++..++
T Consensus 141 ~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 201 (524)
T 2xut_A 141 SNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKR 201 (524)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999776665 8888889999999988877776665666666666666665555544433
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.64 E-value=2.8e-08 Score=96.70 Aligned_cols=125 Identities=13% Similarity=0.092 Sum_probs=97.3
Q ss_pred hhhhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCc-hhhhhhhhhccCCCcchhHHHH-HHH
Q 013910 19 LLEPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVV-FST 96 (434)
Q Consensus 19 ~~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~-~~~ 96 (434)
++.+++.||+|||+.+..+..+..++.++.++.++...+++..++.|++.+.. .....+..|..|++.||...++ ++.
T Consensus 277 ~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 356 (417)
T 2cfq_A 277 FFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCF 356 (417)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 45567999999999999888888877777778888888888888888775433 2345678899999999999888 578
Q ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH-HhcCCCh
Q 013910 97 FWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFI-VFMPESP 143 (434)
Q Consensus 97 ~~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~-~~lpESp 143 (434)
...+|..+++.++..+.+..+|+..|.+.++..++..+.. ...||.+
T Consensus 357 ~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 357 FKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp THHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 8889999999888877777789999988877766655443 3455543
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.61 E-value=1.4e-06 Score=86.24 Aligned_cols=103 Identities=12% Similarity=0.016 Sum_probs=70.8
Q ss_pred HhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh------------------hhhhHHHHHHHHHHHHHHhhhh
Q 013910 279 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT------------------LQSNILLTALLSGARMFSMGTF 340 (434)
Q Consensus 279 ~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~ 340 (434)
.++.++|.+++|+++||+|||+.+.++.++..+..+...+ ..+.....+.-+...+...+..
T Consensus 65 ~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~ 144 (491)
T 4gc0_A 65 LIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLAS 144 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4667889999999999999999999887776665443331 1111112222222223333456
Q ss_pred hhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHH
Q 013910 341 IIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGL 381 (434)
Q Consensus 341 ~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l 381 (434)
+....+.+|..|++.|+...++......+|..+++.+...+
T Consensus 145 ~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~ 185 (491)
T 4gc0_A 145 MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFI 185 (491)
T ss_dssp HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhh
Confidence 77888999999999999999998888777777766655433
Done!