BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013911
         (434 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QE7|A Chain A, Crystal Structure Of Uracil Transporter--Uraa
          Length = 429

 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 5/156 (3%)

Query: 164 GLIDAAPWIRVPW---PFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPM 220
           G++D  P I   W   P  +  P F+      ++ A+ V + E  G     A       +
Sbjct: 200 GIVDTTPIINAHWFALPTLY-TPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLL 258

Query: 221 PPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFS 280
               L R +   G+  ++SG FG+   T+   EN G++A+TRV S  V+  +A F I  S
Sbjct: 259 RDPGLHRSMFANGLSTVISGFFGSTPNTTYG-ENIGVMAITRVYSTWVIGGAAIFAILLS 317

Query: 281 VLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFL 316
            +GK  A    IP P++  +  L +  +GA G+  L
Sbjct: 318 CVGKLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVL 353


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.142    0.458 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,527,729
Number of Sequences: 62578
Number of extensions: 501918
Number of successful extensions: 1037
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1034
Number of HSP's gapped (non-prelim): 7
length of query: 434
length of database: 14,973,337
effective HSP length: 102
effective length of query: 332
effective length of database: 8,590,381
effective search space: 2852006492
effective search space used: 2852006492
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (25.0 bits)