Query 013911
Match_columns 434
No_of_seqs 184 out of 1652
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 08:37:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013911.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013911hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1292 Xanthine/uracil transp 100.0 1.2E-76 2.5E-81 598.9 19.8 422 5-434 70-508 (510)
2 COG2233 UraA Xanthine/uracil p 100.0 7.7E-66 1.7E-70 526.6 11.2 345 3-394 72-438 (451)
3 PRK11412 putative uracil/xanth 100.0 7.4E-62 1.6E-66 502.4 11.0 342 4-392 64-430 (433)
4 PRK10720 uracil transporter; P 100.0 5.9E-57 1.3E-61 467.7 11.0 334 3-392 59-408 (428)
5 TIGR03616 RutG pyrimidine util 100.0 5.1E-56 1.1E-60 460.6 9.6 345 3-392 75-428 (429)
6 TIGR03173 pbuX xanthine permea 100.0 1.3E-55 2.9E-60 455.7 9.6 338 4-390 55-406 (406)
7 TIGR00801 ncs2 uracil-xanthine 100.0 2.2E-54 4.9E-59 447.5 10.3 330 7-388 66-415 (415)
8 PF00860 Xan_ur_permease: Perm 100.0 1.3E-51 2.8E-56 423.8 0.7 317 3-343 56-386 (389)
9 COG2252 Xanthine/uracil/vitami 99.9 9.5E-23 2.1E-27 208.3 10.9 293 34-390 99-412 (436)
10 COG0659 SUL1 Sulfate permease 99.8 1.1E-21 2.3E-26 209.5 8.1 247 33-316 94-371 (554)
11 TIGR00815 sulP high affinity s 99.7 2.8E-17 6.2E-22 176.9 11.0 246 34-310 94-376 (563)
12 PRK11660 putative transporter; 99.7 2.9E-17 6.3E-22 177.0 9.4 248 34-304 100-389 (568)
13 TIGR00843 benE benzoate transp 99.7 1.1E-16 2.3E-21 163.4 8.4 261 4-309 76-346 (395)
14 PF00916 Sulfate_transp: Sulfa 99.6 3.2E-16 6.9E-21 154.0 1.5 241 53-321 1-275 (280)
15 KOG0236 Sulfate/bicarbonate/ox 99.4 7.5E-13 1.6E-17 144.6 10.6 258 34-320 163-455 (665)
16 PF03594 BenE: Benzoate membra 99.4 3E-13 6.5E-18 136.3 3.1 238 34-309 85-330 (378)
17 COG3135 BenE Uncharacterized p 99.2 6.5E-11 1.4E-15 117.4 8.0 256 2-300 73-335 (402)
18 TIGR00834 ae anion exchange pr 96.8 0.0049 1.1E-07 69.6 9.5 181 119-319 592-799 (900)
19 KOG1172 Na+-independent Cl/HCO 95.3 0.029 6.3E-07 62.5 5.9 256 43-318 451-774 (876)
20 PF11840 DUF3360: Protein of u 95.0 0.17 3.6E-06 51.7 10.0 250 44-320 149-417 (492)
21 PF00955 HCO3_cotransp: HCO3- 90.5 0.084 1.8E-06 56.6 0.2 182 119-318 277-479 (510)
22 COG0659 SUL1 Sulfate permease 66.1 3.7 8E-05 44.8 2.1 121 189-321 24-155 (554)
23 TIGR00815 sulP high affinity s 52.9 8.7 0.00019 41.9 2.2 115 190-316 18-149 (563)
24 PRK11660 putative transporter; 37.4 16 0.00034 40.0 1.2 113 189-313 32-152 (568)
25 KOG4085 Uncharacterized conser 36.9 10 0.00023 33.7 -0.2 103 263-388 30-141 (175)
26 COG4744 Uncharacterized conser 20.8 81 0.0018 27.0 2.3 28 375-402 35-67 (121)
27 PF03594 BenE: Benzoate membra 20.1 17 0.00037 37.7 -2.2 115 184-302 2-127 (378)
No 1
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.2e-76 Score=598.95 Aligned_cols=422 Identities=58% Similarity=1.056 Sum_probs=396.6
Q ss_pred ccccceEeeeeeeEEEecccC-----C---C-h----hHHHHHHHHhhhhHHHHHhHHHHHHhhhhhhHHHHHhcCCCcc
Q 013911 5 FKHHTTVINISLFWVVTLLSR-----F---D-A----IQKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSV 71 (434)
Q Consensus 5 ~~rlP~v~G~Sfa~i~~~~~~-----~---~-~----~~~~~~~~~~~~ga~~vaGli~~llg~~gl~~~l~~~fppvV~ 71 (434)
+.|||++||+||||++|.++. + . + +++|++.+|+++|++++++++++++|++|+.+++.|++.|+.+
T Consensus 70 G~RLp~v~G~Sfafl~p~~~i~~~~~~~~~~~~~~~~~~~~~~~mr~iqGAlivas~vqiilG~sGl~g~l~rfi~Plti 149 (510)
T KOG1292|consen 70 GTRLPLVQGPSFAFLPPALAIISLPRFTCITTPHETDTERFQHRMREIQGALIVASLVQIILGFSGLWGNLLRFIGPLTI 149 (510)
T ss_pred hcccccccccceehhhHHHHHHhccccCCCCCcccchhHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHhhcCChhh
Confidence 569999999999999999832 2 1 1 2479999999999999999999999999999999999999999
Q ss_pred chhhhhhhchhhhccCCCcccceeechhHHHHHHHHHhh--chhhh--hcCcccccchhhhHHHHHHHHHHHHHhhcccc
Q 013911 72 VPLISLVGFGLYEFGFPGVAKCVEIGLPQLVIIVFISQY--LPHVI--KRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAY 147 (434)
Q Consensus 72 G~~i~lIGl~l~~~g~~~~~~~~~i~~~~l~~ii~l~~~--~k~~~--~~~~~~l~~~aiLigivvG~~~a~~~g~~~~~ 147 (434)
.+++.++|++++..+.+.++.||.++++.+++++++++| .++.. ..+++.++++++++++.+.|++|.++...|.|
T Consensus 150 ~P~v~lvgl~l~~~~~~~~~~~weI~l~~~llli~fsqy~~~~~~~~~~~~~~if~~f~vll~i~ivW~~~~iLT~tgay 229 (510)
T KOG1292|consen 150 VPLVALVGLGLFQDGFPKLGKHWEISLPEILLLILFSQYASLPKKGFGSRRIQIFSRFPVLLAIAIVWLYCFILTITGAY 229 (510)
T ss_pred hhHHHHHhhhhHHhhhhhhhhheeecHHHHHHHHHHHHhhhcccccccccccchHhhccHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999 53322 13467889999999999999999999999999
Q ss_pred CCCCCCccceeccccCCCccCCCceecccCCCCCCCccChhhHHHHHHHHHHHHHhhcchhhhhhhhcCCCCCCcccccc
Q 013911 148 NDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSR 227 (434)
Q Consensus 148 ~~~~~~~~~~~~vd~~~~v~~~p~f~~P~~~~~g~P~f~~~~i~~~~~i~lv~~~esig~~~a~~~~~~~~~~~~~~i~r 227 (434)
|+.+.+|+.++|+|.+..+.++||+.+|+|++||.|+||++....++...++.++||+|++.+++|.+..++++++.+||
T Consensus 230 ~~~~~~t~~~~RTD~~~vi~~apWi~vPyP~QwG~P~f~~~~~f~m~aa~~va~iES~G~y~a~ar~~~a~ppP~~~inR 309 (510)
T KOG1292|consen 230 PYKPTTTQSSCRTDRNGVISSAPWIRVPYPFQWGPPTFSAGLVFAMMAASLVAMIESTGDYIACARLSSATPPPPSVLNR 309 (510)
T ss_pred CCCccccCCcccccHhhhhccCCceeecCCCccCCCcccHHHHHHHHHHHHHHHHHhcchHHHHHHHhcCCCCChhhhhh
Confidence 88778899999999988889999999999999999999999999999999999999999999999999988888999999
Q ss_pred cccchhhhhhhhccccccccceeeeecceeeeeeeeCceeEEEechhHHHHHHhhhcccceecccchHHHHHHHHHHHHH
Q 013911 228 GVGWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAY 307 (434)
Q Consensus 228 ~~~~dGl~~ilaglfG~~~~tt~~~~n~g~i~~Tgv~SR~~~~~a~~~lill~l~pk~~al~a~IP~pV~gg~liv~fg~ 307 (434)
++..||++++++|+||+...+|.++||+|+++.||++||++.+++|.+|++++++.||+|++++||.|++||++.+.|++
T Consensus 310 gi~~eGig~lL~gl~G~gtG~Tt~~ENigll~vTKVgSRrvvQ~aa~fmI~~~i~gKFgA~fAsIP~piv~~l~c~~~~m 389 (510)
T KOG1292|consen 310 GIGWEGIGSLLAGLFGTGTGSTTSVENIGLLGVTKVGSRRVVQIAAGFMIFFGIFGKFGAFFASIPDPIVGGLLCILFGM 389 (510)
T ss_pred hhhhhhHHHHHHHhhCCCccceeeccceeeEeeeeeeeeeehhhhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 99999999999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCcchhhhccccccchhhhhhhhhhhccChhhhHHHhhhhcCcCcccccccccccccccccCChhhHHHHHHHHhhc
Q 013911 308 VGAGGLSFLQFCNLNSFRVKFILGFSIFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDN 387 (434)
Q Consensus 308 i~~~Gi~~l~~~~~~~~rn~~ivg~sl~~Gl~~p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~~gi~~g~l~ai~Ln~ 387 (434)
+...|+++++.+|+++.||.+|+|+|+.+|+.+|+||+++ .+|.|+++++++++++.++++.+.+|+++|++||+
T Consensus 390 v~avgLSnLQf~dlns~RNl~IlG~Sif~gLsip~yF~~~-----~~~v~Tg~~~~d~ilnvll~~~m~Vggi~A~~LDn 464 (510)
T KOG1292|consen 390 VGAVGLSNLQFVDLNSSRNLFILGFSIFLGLSIPQYFEQY-----PGPVHTGNGWFDDILNVLLSSRMLVGGILAFILDN 464 (510)
T ss_pred HHHHhhhhheeeccccccchhhhhHHHHHhccHHHHHHhC-----CCccccCcHHHHHHHHHHhhHHHHHHHHHhhhccc
Confidence 9999999999999999999999999999999999999996 45799999999999999999999999999999999
Q ss_pred cccccCCcccccccchhhhhhccccCCcCcccccccccccccCCCCC
Q 013911 388 TLHKKDGQVRKDRGRHWWDKFWSFKGDTRSEEFYSLPFNLNKYFPSV 434 (434)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (434)
+.|+ .+|||||+++|++.++.++|.|.+|+|+||+++||+|++.
T Consensus 465 t~~g---atr~~RG~~~w~~~~~~~~d~~~~e~Y~lP~~~n~~f~~~ 508 (510)
T KOG1292|consen 465 TLPG---ATREQRGLRWWDKFETFNGDVRNEEFYSLPFNLNRFFPRI 508 (510)
T ss_pred cCCC---CChHhcCCcchhccccccCCccccccccCcHHHHhhcccC
Confidence 9994 3799999999999999999999999999999999999874
No 2
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=100.00 E-value=7.7e-66 Score=526.65 Aligned_cols=345 Identities=24% Similarity=0.425 Sum_probs=315.3
Q ss_pred ccc-c--ccceEeeeeeeEEEecccCCChhHHHHHHHHhhhhHHHHHhHHHHHHhhhhhhH-HHHHhcCCCccchhhhhh
Q 013911 3 CAF-K--HHTTVINISLFWVVTLLSRFDAIQKFKRTMRAIQGSLIVASTLQIVLGFSGLWR-NVTRFLSPLSVVPLISLV 78 (434)
Q Consensus 3 ~~~-~--rlP~v~G~Sfa~i~~~~~~~~~~~~~~~~~~~~~ga~~vaGli~~llg~~gl~~-~l~~~fppvV~G~~i~lI 78 (434)
|++ . |+|++||+||+|++|++....+. .++.++++|+++++|+++++++.. ++ |++|+|||+|+|.++++|
T Consensus 72 ~~~~~g~~lP~~lG~sFafi~p~i~~~~~~---g~~~~~~~G~ii~ag~~~~li~~~--~~~~l~rlfPPvVtG~Vi~~I 146 (451)
T COG2233 72 GTGPGGSGLPSYLGSSFAFVAPMIAIGGTT---GDGIAALLGGIIAAGLVYFLISPI--VKIRLARLFPPVVTGPVVLVI 146 (451)
T ss_pred hccCcccCCCeeEechHHHHHHHHHHHhcc---CCchHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCCCceEEeEeeee
Confidence 455 5 99999999999999998543210 135999999999999999999974 56 999999999999999999
Q ss_pred hchhhhccCCCccc--------------ceeechhHHHHHHHHHhhchhhhhcCcccccchhhhHHHHHHHHHHHHHhhc
Q 013911 79 GFGLYEFGFPGVAK--------------CVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVG 144 (434)
Q Consensus 79 Gl~l~~~g~~~~~~--------------~~~i~~~~l~~ii~l~~~~k~~~~~~~~~l~~~aiLigivvG~~~a~~~g~~ 144 (434)
|++|.+.+++++++ +..+++.+++++++++++.|+ ++|+.++|+|+++||++++.+|.
T Consensus 147 GlsL~~vai~~~~G~~~~~~~~~~~~~~~l~la~~tl~~il~~~~f~~g-------~~~~i~ILiGlv~G~~la~~~G~- 218 (451)
T COG2233 147 GLSLAPVAINMAGGGPGAAGNPDFGSLENLGLALVTLLIILLINRFGKG-------FLRRIPILIGLVVGYLLALFMGM- 218 (451)
T ss_pred hhhhHHHHHHHhhCCCCCCCCcccCchhHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHHHHHHHHhCC-
Confidence 99999998876531 356788888888888888765 58899999999999999999974
Q ss_pred cccCCCCCCccceeccccCCCccCCCceecccCCCCCCCccChhhHHHHHHHHHHHHHhhcchhhhhhhhcCCCCCCccc
Q 013911 145 GAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSV 224 (434)
Q Consensus 145 ~~~~~~~~~~~~~~~vd~~~~v~~~p~f~~P~~~~~g~P~f~~~~i~~~~~i~lv~~~esig~~~a~~~~~~~~~~~~~~ 224 (434)
+|+++ +.++|||++|.|++||. +|||.+++++++++++.+.|++|++.|++++++++..++++
T Consensus 219 ---------------vdf~~-v~~a~w~~~P~~~~fg~-~F~~~ail~m~~v~iV~~~E~~G~i~A~~~itg~~~~~~~~ 281 (451)
T COG2233 219 ---------------VDFSG-VAEAPWFALPTPFYFGM-AFDWGAILTMLPVAIVTIVEHTGDITATGEITGRDLDGKPR 281 (451)
T ss_pred ---------------cCccc-cccCceeeCCcccCCCe-eecHHHHHHHHHHHHHHHHHHhhhhhhHHhHhCCcCccCcc
Confidence 57876 88999999999999999 99999999999999999999999999999999977666799
Q ss_pred ccccccchhhhhhhhccccccccceeeeecceeeeeeeeCceeEEEechhHHHHHHhhhcccceecccchHHHHHHHHHH
Q 013911 225 LSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLF 304 (434)
Q Consensus 225 i~r~~~~dGl~~ilaglfG~~~~tt~~~~n~g~i~~Tgv~SR~~~~~a~~~lill~l~pk~~al~a~IP~pV~gg~liv~ 304 (434)
++|++++||++++++|+||+.|.|+|+ ||+|+++.||++||++..++++++++++++||+++++++||.||+||+.+++
T Consensus 282 l~rg~~aDGlat~iag~fg~~p~Ttfa-qNiGvv~lT~v~Sr~V~~~aavili~lgl~pk~~al~~sIP~pVlGGa~ivm 360 (451)
T COG2233 282 LRRGLLADGLATLIAGLFGGFPNTTFA-QNIGVVALTGVYSRYVIAGAAVILILLGLFPKFGALIQSIPSPVLGGAMLVL 360 (451)
T ss_pred cccceeeccHHHHHHHhcCCCCCCchh-hceeeeeeccCChhHHHHHHHHHHHHHHhhHHHHHHHHhCChhhhhHHHHHH
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCcchhhhccccccc-hhhhhhhhhhhccCh---hhhHHHhhhhcCcCcccccccccccccccccCChhhHHHH
Q 013911 305 FAYVGAGGLSFLQFCNLNSFR-VKFILGFSIFIGLSV---PQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGC 380 (434)
Q Consensus 305 fg~i~~~Gi~~l~~~~~~~~r-n~~ivg~sl~~Gl~~---p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~~gi~~g~l 380 (434)
||++..+|+|.+.+.|+|++| |.+|+++++.+|++. |+++++ +|.+++.+++||+++|++
T Consensus 361 FG~Ia~sGir~l~~~~~~~~~~Nl~IvAvsl~~Gig~~~~p~~~~~----------------~p~~~~~l~~sGia~g~i 424 (451)
T COG2233 361 FGMIAASGIRILIRNKVDRSRRNLLIVAVSLGLGIGVGAVPEVFLQ----------------LPAWLRPLLSSGIALGTL 424 (451)
T ss_pred HHHHHHHHHHHHHhcccccCccceeeehHHHHhCcchhcCchhhhh----------------CcHHHHHHHhccHHHHHH
Confidence 999999999999999998756 999999999999994 888887 799999999999999999
Q ss_pred HHHHhhccccccCC
Q 013911 381 VAFFLDNTLHKKDG 394 (434)
Q Consensus 381 ~ai~Ln~~~~~~~~ 394 (434)
+|++||+++|++++
T Consensus 425 ~AIvLNlll~~~~~ 438 (451)
T COG2233 425 TAIVLNLLLPGEKR 438 (451)
T ss_pred HHHHHHHhcccccc
Confidence 99999999997533
No 3
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=100.00 E-value=7.4e-62 Score=502.43 Aligned_cols=342 Identities=16% Similarity=0.294 Sum_probs=296.4
Q ss_pred cccccceEeeeeeeEEEecccCCC-h-h--HHHHHHHHhhhhHHHHHhHHHHHHhhhhhhHHHHHhcCCCccchhhhhhh
Q 013911 4 AFKHHTTVINISLFWVVTLLSRFD-A-I--QKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVG 79 (434)
Q Consensus 4 ~~~rlP~v~G~Sfa~i~~~~~~~~-~-~--~~~~~~~~~~~ga~~vaGli~~llg~~gl~~~l~~~fppvV~G~~i~lIG 79 (434)
.++|||++||+||+|++|+++... + . ..+++-+++.+|+++++|++++++|++++++|++|+|||+|+|+++++||
T Consensus 64 ~G~rlPiv~G~Sf~~~~~~~~i~~~~~~~g~~~~~~~g~l~g~~i~~g~~~~~lg~~~~~~~l~r~fpPvV~G~vv~lIG 143 (433)
T PRK11412 64 CGHRRAIMEGPGGLWWGTILTITLGEASRGTPINDIATSLAVGIALSGVVTILIGFSGLGHRLARLFTPMVMVVFMLLLG 143 (433)
T ss_pred cCCCCeeeeCCchHHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhHhHHHHH
Confidence 578999999999999999885431 1 0 01223455556679999999999999999999999999999999999999
Q ss_pred chhhhccCCCccc---------------ceeechhHHHHHHHHHhhchhhhhcCcccccchhhhHHHHHHHHHHH-HHhh
Q 013911 80 FGLYEFGFPGVAK---------------CVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAH-LLTV 143 (434)
Q Consensus 80 l~l~~~g~~~~~~---------------~~~i~~~~l~~ii~l~~~~k~~~~~~~~~l~~~aiLigivvG~~~a~-~~g~ 143 (434)
+++++.+++++.+ ++.+++.++.+++.++++. |+++|++++|+|+++||+++. .++.
T Consensus 144 lsL~~~a~~~~~G~~~~~~~~~~~~~~~~~~~a~~~l~~il~~~~~~-------~g~~~~~svLiGiv~G~v~a~~~~g~ 216 (433)
T PRK11412 144 AQLTTIFFKGMLGLPFGIADPNGKIQLPPFGLSVAVMCLVLAMIIFL-------PQRIARYSLLVGTIVGWILWAFCFPS 216 (433)
T ss_pred HhhHHHHHHHhcCCCccCcccccccchHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999998875421 1224555555555555554 456899999999999999854 4432
Q ss_pred ccccCCCCCCccceeccccCCCccCCCceecccCCCCCCCc-cChhhHHHHHHHHHHHHHhhcchhhhhhhhcCCCCCCc
Q 013911 144 GGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPS-FDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPP 222 (434)
Q Consensus 144 ~~~~~~~~~~~~~~~~vd~~~~v~~~p~f~~P~~~~~g~P~-f~~~~i~~~~~i~lv~~~esig~~~a~~~~~~~~~~~~ 222 (434)
|++. +.+++|. +++||.|. ||+.+++++++++++.+.|++||++++++.++++.+++
T Consensus 217 -----------------d~~~-v~~a~w~----~~pfG~P~~F~~~~il~~~~~~lv~~~e~iG~~~a~~~~~~~~~~~~ 274 (433)
T PRK11412 217 -----------------SHSL-SGELHWQ----WFPLGSGGALEPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGN 274 (433)
T ss_pred -----------------Ccch-hccCCce----eecCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 4453 5778885 34589995 99999999999999999999999999999987655457
Q ss_pred ccccccccchhhhhhhhccccccccceeeeecceeeeeeeeCceeEEEechhHHHHHHhhhcccceecccchHHHHHHHH
Q 013911 223 SVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYC 302 (434)
Q Consensus 223 ~~i~r~~~~dGl~~ilaglfG~~~~tt~~~~n~g~i~~Tgv~SR~~~~~a~~~lill~l~pk~~al~a~IP~pV~gg~li 302 (434)
++++|++.+||++|+++|+||+.|+|+|+ ||+|+++.||++||+++.++|+++++++++||+++++++||.||+||+++
T Consensus 275 ~~l~rgi~~dGi~s~laglfg~~p~tt~s-qNvGvi~~TgV~SR~v~~~aa~ilillgl~PK~~alia~IP~pVlGg~~~ 353 (433)
T PRK11412 275 TRYRRSFVATGFMTLITVPLAVIPFSPFV-SSIGLLTQTGDYRRRSFIYGSVMCLLVALIPALTRLFCSIPLPVSSAVML 353 (433)
T ss_pred cccccchhhccHHHHHHHhcCCCCCCchh-hhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 89999999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCcchhhhccccccchhhhhhhhhhhccCh---h-hhHHHhhhhcCcCcccccccccccccccccCChhhHH
Q 013911 303 LFFAYVGAGGLSFLQFCNLNSFRVKFILGFSIFIGLSV---P-QYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVA 378 (434)
Q Consensus 303 v~fg~i~~~Gi~~l~~~~~~~~rn~~ivg~sl~~Gl~~---p-~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~~gi~~g 378 (434)
++|+++..+|+|.++++|+| +||.+|+|+++.+|++. | +++++ +|++++++++||+++|
T Consensus 354 ~~Fg~I~~~Gi~~l~~~~~~-~rn~~ivg~sl~~Glg~~~~p~~~~~~----------------~P~~~~~~l~sgi~~g 416 (433)
T PRK11412 354 VSYLPLLGSALVFSQQITFT-ARNIYRLALPLFVGIFLMALPPVYLQD----------------LPLTLRPLLSNGLLVG 416 (433)
T ss_pred HHHHHHHHHHHHHHHhCCCC-cccchhhHHHHHHHhhHHhCCHHHHHH----------------ChHHHHHHHcCcHHHH
Confidence 99999999999999999997 69999999999999996 6 58887 7999999999999999
Q ss_pred HHHHHHhhcccccc
Q 013911 379 GCVAFFLDNTLHKK 392 (434)
Q Consensus 379 ~l~ai~Ln~~~~~~ 392 (434)
+++|++||+++|++
T Consensus 417 ~l~AilLn~~~~~~ 430 (433)
T PRK11412 417 ILLAVLMENLIPWE 430 (433)
T ss_pred HHHHHHHHhhcCcc
Confidence 99999999999974
No 4
>PRK10720 uracil transporter; Provisional
Probab=100.00 E-value=5.9e-57 Score=467.75 Aligned_cols=334 Identities=19% Similarity=0.301 Sum_probs=292.1
Q ss_pred ccccccceEeeeeeeEEEecccCCChhHHHHHHHHhhhhHHHHHhHHHHHHhhh--hh-hHHHHHhcCCCccchhhhhhh
Q 013911 3 CAFKHHTTVINISLFWVVTLLSRFDAIQKFKRTMRAIQGSLIVASTLQIVLGFS--GL-WRNVTRFLSPLSVVPLISLVG 79 (434)
Q Consensus 3 ~~~~rlP~v~G~Sfa~i~~~~~~~~~~~~~~~~~~~~~ga~~vaGli~~llg~~--gl-~~~l~~~fppvV~G~~i~lIG 79 (434)
+++.|||++||+||+|++|++.... ++||+++|+++++|+++++++++ ++ ++|++|+|||+++|.++++||
T Consensus 59 ~~g~rlP~~~G~sfa~i~~~~~~~~------~~~~~~lgav~v~Glv~ills~~~~~~g~~~l~~~fPp~v~G~~i~lIG 132 (428)
T PRK10720 59 ICKGKIPAYLGSSFAFISPVLLLLP------LGYEVALGGFIMCGVLFCLVALIVKKAGTGWLDVLFPPAAMGAIVAVIG 132 (428)
T ss_pred hccCccceEEeCcHHHHHHHHHHHH------ccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHH
Confidence 4567999999999999999986542 47999999999999999999986 22 679999999999999999999
Q ss_pred chhhhccCCCccc-----------ceeechhHHHHHHHHHhhchhhhhcCcccccchhhhHHHHHHHHHHHHHhhccccC
Q 013911 80 FGLYEFGFPGVAK-----------CVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYN 148 (434)
Q Consensus 80 l~l~~~g~~~~~~-----------~~~i~~~~l~~ii~l~~~~k~~~~~~~~~l~~~aiLigivvG~~~a~~~g~~~~~~ 148 (434)
+++.+.++++.+. ++.+++.+++++++++++.| +++|++++|+|+++||++++.+|.
T Consensus 133 l~L~~~~~~~~g~~~~~~~~~~~~~~~lalv~l~iil~~~~~~k-------g~~~~~~iLigIvvG~ila~~lG~----- 200 (428)
T PRK10720 133 LELAGVAAGMAGLLPAEGQTPDSKTIIISMVTLAVTVLGSVLFR-------GFLAIIPILIGVLVGYALSFAMGM----- 200 (428)
T ss_pred HHhHHHHHhhccccCCCCcccchHHHHHHHHHHHHHHHHHHHhc-------cHHHHhHHHHHHHHHHHHHHHhcC-----
Confidence 9999987765431 34566677666666555554 457889999999999999999874
Q ss_pred CCCCCccceeccccCCCccCCCceecccCCCCCCCccChhhHHHHHHHHHHHHHhhcchhhhhhhhcCCCCCCccccccc
Q 013911 149 DAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRG 228 (434)
Q Consensus 149 ~~~~~~~~~~~vd~~~~v~~~p~f~~P~~~~~g~P~f~~~~i~~~~~i~lv~~~esig~~~a~~~~~~~~~~~~~~i~r~ 228 (434)
+|++. +.+++|+++|. |+.|+||+..+..+++.+++.++|++|++.++++..+++..+++++||+
T Consensus 201 -----------~d~~~-v~~a~~~~lP~---~~~P~fd~~~il~l~~~~lv~~~EsiG~~~a~~~~~~~~~~~~~~~~r~ 265 (428)
T PRK10720 201 -----------VDTTP-IIEAHWFALPT---FYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRS 265 (428)
T ss_pred -----------CCHHH-hhcCccccCCC---CCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccch
Confidence 25543 66789999994 5678999999999999999999999999999999887554356899999
Q ss_pred ccchhhhhhhhccccccccceeeeecceeeeeeeeCceeEEEechhHHHHHHhhhcccceecccchHHHHHHHHHHHHHh
Q 013911 229 VGWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYV 308 (434)
Q Consensus 229 ~~~dGl~~ilaglfG~~~~tt~~~~n~g~i~~Tgv~SR~~~~~a~~~lill~l~pk~~al~a~IP~pV~gg~liv~fg~i 308 (434)
+++||++|+++|+||++|+|+|+ ||+|+++.||++||+++.++++++++++++||++++++.||.||+||+.+++|+++
T Consensus 266 l~adGlatii~glfG~~p~tty~-en~g~ia~T~v~sr~v~~~a~~~li~lg~~pk~~a~ia~iP~pVlgg~~i~~fg~i 344 (428)
T PRK10720 266 MFANGLSTVISGFFGSTPNTTYG-ENIGVMAITRVYSTWVIGGAAIIAILLSCVGKLAAAIQAIPLPVMGGVSLLLYGVI 344 (428)
T ss_pred HhhhhHHHHHHHhcCCCCccccc-cccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred hccCcchh--hhccccccchhhhhhhhhhhccChhhhHHHhhhhcCcCcccccccccccccccccCChhhHHHHHHHHhh
Q 013911 309 GAGGLSFL--QFCNLNSFRVKFILGFSIFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLD 386 (434)
Q Consensus 309 ~~~Gi~~l--~~~~~~~~rn~~ivg~sl~~Gl~~p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~~gi~~g~l~ai~Ln 386 (434)
..+|+|.+ ++.|++++||.+|+|+++.+|++.... + ++.++.+|+..|+++|++||
T Consensus 345 ~~~Gi~~l~~~~~~~~~~~n~~i~~~~l~~g~~~~~~--------------------~--~~~~~~~gi~~g~~~ai~Ln 402 (428)
T PRK10720 345 GASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKV--------------------N--IGAAELKGMALATIVGIGLS 402 (428)
T ss_pred HHHHHHHHHHccCCCCcccchhHHHHHHHHHHHHHHH--------------------H--HHHHhcCcHHHHHHHHHHHH
Confidence 99999999 788888888999999999999985421 1 46678899999999999999
Q ss_pred cccccc
Q 013911 387 NTLHKK 392 (434)
Q Consensus 387 ~~~~~~ 392 (434)
+++|.+
T Consensus 403 lll~~~ 408 (428)
T PRK10720 403 LIFKLI 408 (428)
T ss_pred HHhccc
Confidence 999975
No 5
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=100.00 E-value=5.1e-56 Score=460.63 Aligned_cols=345 Identities=18% Similarity=0.279 Sum_probs=294.7
Q ss_pred ccccccceEeeeeeeEEEecccCCC-hhHHHHHHHHhhhhHHHHHhHHHHHHhhhhhh---HHHHHhcCCCccchhhhhh
Q 013911 3 CAFKHHTTVINISLFWVVTLLSRFD-AIQKFKRTMRAIQGSLIVASTLQIVLGFSGLW---RNVTRFLSPLSVVPLISLV 78 (434)
Q Consensus 3 ~~~~rlP~v~G~Sfa~i~~~~~~~~-~~~~~~~~~~~~~ga~~vaGli~~llg~~gl~---~~l~~~fppvV~G~~i~lI 78 (434)
++++|+|++||+||+|++++....+ .....++++++++|+++++|++++++++++++ ++++|+|||+|+|+++++|
T Consensus 75 ~~G~rlP~v~G~sf~f~~~~~~~~~~~~~~~~~~~~~a~ga~iv~G~i~~llg~~~~~~~~~~l~r~fpPvV~G~vv~lI 154 (429)
T TIGR03616 75 ITGGRVPSYLGSSAAFVGAVIAATGYNGQGTNPNIALALGGIIACGLVYAAIGLVVMRTGTRWIERLMPPVVTGAVVMAI 154 (429)
T ss_pred HhCCCceeEEcCcHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCcHHHHHHHHHH
Confidence 4679999999999999999974321 00001246899999999999999999998655 8999999999999999999
Q ss_pred hchhhhccCCCccc---ceeechhHHHHHHHHHhhchhhhhcCcccccchhhhHHHHHHHHHHHHHhhccccCCCCCCcc
Q 013911 79 GFGLYEFGFPGVAK---CVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQ 155 (434)
Q Consensus 79 Gl~l~~~g~~~~~~---~~~i~~~~l~~ii~l~~~~k~~~~~~~~~l~~~aiLigivvG~~~a~~~g~~~~~~~~~~~~~ 155 (434)
|+++++.++++.++ +...++.+++.++++.++.|+ ++|++++|+|+++||++++.++.. ++.
T Consensus 155 GlsL~~vg~~~~~~~~~~~~~al~tl~~i~l~~l~~~~-------~l~~~avLiGivvG~iva~~l~~~--~g~------ 219 (429)
T TIGR03616 155 GLNLAPIAVKSVSASGFDSWMAVLTILCIGAVAVFTRG-------MLQRLLILVGLIAAYLAYFILTNV--FGL------ 219 (429)
T ss_pred HHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhh--cCC------
Confidence 99999999887542 122466666666666666655 578999999999999999886421 110
Q ss_pred ceeccccCCCccCCCceecccCCCCCCCccChhhHHHHHHHHHHHHHhhcchhhhhhhhcCCCCCCcccccccccchhhh
Q 013911 156 ASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVG 235 (434)
Q Consensus 156 ~~~~vd~~~~v~~~p~f~~P~~~~~g~P~f~~~~i~~~~~i~lv~~~esig~~~a~~~~~~~~~~~~~~i~r~~~~dGl~ 235 (434)
.+.+|++. +.++||+++| +|+.|+||++.+.++++.+++.++|++||+.++++.++++. ++++||++++||++
T Consensus 220 -~~~vd~s~-v~~a~~~~lP---~~~~p~f~~~~il~~~~~~lv~~~esiG~~~a~~~~~~~~~--~~~i~r~l~adGl~ 292 (429)
T TIGR03616 220 -GKAVDFSP-ISQAAWFGLP---NFHTPVFNANAMLLIAPVALILVAENLGHFKAVAGMTGRNL--DPYMGRAFVGDGLA 292 (429)
T ss_pred -CccccCcc-cccCccccCC---cCCCceEcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCC--CchhccchhhhhHH
Confidence 01367774 6789999999 57789999999999999999999999999999999887443 34799999999999
Q ss_pred hhhhccccccccceeeeecceeeeeeeeCceeEEEechhHHHHHHhhhcccceecccchHHHHHHHHHHHHHhhccCcch
Q 013911 236 ILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSF 315 (434)
Q Consensus 236 ~ilaglfG~~~~tt~~~~n~g~i~~Tgv~SR~~~~~a~~~lill~l~pk~~al~a~IP~pV~gg~liv~fg~i~~~Gi~~ 315 (434)
|+++|++|+.|.|+|+ ||+|+++.||++||+++..+++++++++++||++++++.||.||+||+++++|+++..+|+|.
T Consensus 293 t~~agl~g~~p~tt~~-en~g~i~~T~v~SR~v~~~a~~~lillgl~Pk~~al~~~IP~pVlgG~~i~~fg~i~~~Gi~~ 371 (429)
T TIGR03616 293 TMLSGSVGGTGVTTYA-ENIGVMAVTKVYSTLVFVAAAVFAILLGFSPKFGALIHTIPVAVLGGASIVVFGLIAVAGARI 371 (429)
T ss_pred HHHHHhcCCCCCccee-eeeeeeeecCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999999999999998
Q ss_pred h--hhccccccchhhhhhhhhhhccChhhhHHHhhhhcCcCcccccccccccccccccCChhhHHHHHHHHhhcccccc
Q 013911 316 L--QFCNLNSFRVKFILGFSIFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDNTLHKK 392 (434)
Q Consensus 316 l--~~~~~~~~rn~~ivg~sl~~Gl~~p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~~gi~~g~l~ai~Ln~~~~~~ 392 (434)
+ ++.|++++||.+|+|+++.+|++.- +..++.+++||+++|+++|++||+++|++
T Consensus 372 l~~~~~d~~~~rn~~ivg~sl~~g~g~~----------------------~~~~~~~~~s~i~~~~~~ai~Ln~~l~~~ 428 (429)
T TIGR03616 372 WVQNKVDLTQNGNLIMVAVTLVLGAGDF----------------------ALTIGAFTLGGIGTATFGAIVLNALLNRD 428 (429)
T ss_pred HHhccCCcCccceeehhHHHHHHHhHHH----------------------HHHHHHHhhCcHHHHHHHHHHHHHhcCCC
Confidence 8 6788987789999999999999752 22356788999999999999999999964
No 6
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=100.00 E-value=1.3e-55 Score=455.70 Aligned_cols=338 Identities=29% Similarity=0.482 Sum_probs=300.4
Q ss_pred cccccceEeeeeeeEEEecccCCChhHHHHHHHHhhhhHHHHHhHHHHHHhhhhhhHHHHHhcCCCccchhhhhhhchhh
Q 013911 4 AFKHHTTVINISLFWVVTLLSRFDAIQKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLY 83 (434)
Q Consensus 4 ~~~rlP~v~G~Sfa~i~~~~~~~~~~~~~~~~~~~~~ga~~vaGli~~llg~~gl~~~l~~~fppvV~G~~i~lIGl~l~ 83 (434)
.++|+|+++|+||+|++++..... +++|++++|+++++|++++++| ++++|++|+|||+++|.++++||+++.
T Consensus 55 ~G~~~P~~~g~s~a~~~~~~~~~~-----~~~~~~~~ga~~v~Gii~illg--~~~~~l~~~iPp~v~G~~i~~IGl~l~ 127 (406)
T TIGR03173 55 FGIRLPVVQGVSFAAVGPMIAIGA-----GGGLGAIFGAVIVAGLFVILLA--PFFSKLVRFFPPVVTGTVITLIGLSLM 127 (406)
T ss_pred cCCccceeecCcHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCcHHHHHHHHHHHHHHH
Confidence 468999999999999998875432 2689999999999999999999 467999999999999999999999999
Q ss_pred hccCCCcc-----------cceeechhHHHHHHHHHhhchhhhhcCcccccchhhhHHHHHHHHHHHHHhhccccCCCCC
Q 013911 84 EFGFPGVA-----------KCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAP 152 (434)
Q Consensus 84 ~~g~~~~~-----------~~~~i~~~~l~~ii~l~~~~k~~~~~~~~~l~~~aiLigivvG~~~a~~~g~~~~~~~~~~ 152 (434)
+.++++.. +++.+++.++++++++.++. |+++|++++|+++++||++++.+|..
T Consensus 128 ~~~~~~~~g~~~~~~~~~~~~~~l~l~~l~~~il~~~~~-------~~~~~~~aiLi~ivvg~iva~~~g~~-------- 192 (406)
T TIGR03173 128 PVAINWAAGGAGAPDFGSPQNLGLALLTLVIILLLNRFG-------KGFLRSIAVLLGLVVGTIVAAALGMV-------- 192 (406)
T ss_pred HHHHHHhccCCCcccccchHHHHHHHHHHHHHHHHHHHh-------hhHHHHhHHHHHHHHHHHHHHHhcCC--------
Confidence 88775542 12346666666655554444 34578999999999999999988742
Q ss_pred CccceeccccCCCccCCCceecccCCCCCCCccChhhHHHHHHHHHHHHHhhcchhhhhhhhcCCCCCCcccccccccch
Q 013911 153 KTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQ 232 (434)
Q Consensus 153 ~~~~~~~vd~~~~v~~~p~f~~P~~~~~g~P~f~~~~i~~~~~i~lv~~~esig~~~a~~~~~~~~~~~~~~i~r~~~~d 232 (434)
|++. +.+.||+++|.+++|+.|+||+..+..++.+++++++|++|+++++++..+++ .+++++||++.+|
T Consensus 193 --------~~~~-i~~~~~~~~P~~~~~~~P~f~~~~~~~~~~~~lv~~~esig~~~a~~~~~g~~-~~~~~~~~~l~~~ 262 (406)
T TIGR03173 193 --------DFSG-VAEAPWFALPTPFHFGAPTFDLVAILTMIIVYLVSMVETTGDFLALGEITGRP-ITEKDLAGGLRAD 262 (406)
T ss_pred --------Cchh-hccCCeeeCCCCCcCCCCeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCchhccchHHhc
Confidence 4443 56689999999888999999999999999999999999999999999987754 3568999999999
Q ss_pred hhhhhhhccccccccceeeeecceeeeeeeeCceeEEEechhHHHHHHhhhcccceecccchHHHHHHHHHHHHHhhccC
Q 013911 233 GVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGG 312 (434)
Q Consensus 233 Gl~~ilaglfG~~~~tt~~~~n~g~i~~Tgv~SR~~~~~a~~~lill~l~pk~~al~a~IP~pV~gg~liv~fg~i~~~G 312 (434)
|++|+++|+||++|.|+|+ ||+|+++.||++||++..++|+++++++++||++++++.||.||+||+++++|+++...|
T Consensus 263 Gi~~i~aglfG~~p~t~~~-~~~~~~~~tg~~sr~~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l~~~~~i~~~g 341 (406)
T TIGR03173 263 GLGSALGGLFNTFPYTSFS-QNVGLVQLTGVKSRYVVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGLVMFGMVAASG 341 (406)
T ss_pred cHHHHHHHHhCCCCCcchh-hhHHHHHHhCCCchHhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccccccchhhhhhhhhhhccCh---hhhHHHhhhhcCcCcccccccccccccccccCChhhHHHHHHHHhhccc
Q 013911 313 LSFLQFCNLNSFRVKFILGFSIFIGLSV---PQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDNTL 389 (434)
Q Consensus 313 i~~l~~~~~~~~rn~~ivg~sl~~Gl~~---p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~~gi~~g~l~ai~Ln~~~ 389 (434)
+|.+++.|+||+||.+|+|+++.+|++. |+++++ +|+.++++++||+++|+++|++||+++
T Consensus 342 ~~~l~~~~~~~~rn~~i~g~~~~~g~~~~~~p~~~~~----------------~p~~~~~~~~~~~~~g~~~ai~l~~~~ 405 (406)
T TIGR03173 342 IRILSKVDFDRRRNLLIVAVSLGLGLGPTVVPEFFSQ----------------LPAWAQTLFSSGIAVGAISAILLNLLF 405 (406)
T ss_pred HHHHHhCcccCcceehhhHHHHHHHHHHHhhHHHHHH----------------ChHHHHHHHhCcHHHHHHHHHHHHhhc
Confidence 9999999998877999999999999975 888887 799999999999999999999999998
Q ss_pred c
Q 013911 390 H 390 (434)
Q Consensus 390 ~ 390 (434)
|
T Consensus 406 p 406 (406)
T TIGR03173 406 N 406 (406)
T ss_pred C
Confidence 6
No 7
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=100.00 E-value=2.2e-54 Score=447.47 Aligned_cols=330 Identities=27% Similarity=0.449 Sum_probs=293.1
Q ss_pred ccceEeeeeeeEEEecccCCChhHHHHHHHHhhhhHHHHHhHHHHHHhhh--h-hhHHHHHhcCCCccchhhhhhhchhh
Q 013911 7 HHTTVINISLFWVVTLLSRFDAIQKFKRTMRAIQGSLIVASTLQIVLGFS--G-LWRNVTRFLSPLSVVPLISLVGFGLY 83 (434)
Q Consensus 7 rlP~v~G~Sfa~i~~~~~~~~~~~~~~~~~~~~~ga~~vaGli~~llg~~--g-l~~~l~~~fppvV~G~~i~lIGl~l~ 83 (434)
|+|++||+||+|+++...... .++||+++|+++++|+++++++++ + .+++++|+|||+|+|.++++||+++.
T Consensus 66 ~lp~~~G~sfa~i~~~~~~~~-----~~~~~~~~g~~i~~gl~~~ll~~~~~~~~~~~i~~~~Pp~v~g~iv~~IGl~L~ 140 (415)
T TIGR00801 66 GLPSYLGSSFAFVSPMIAIGS-----GLGIPAIMGALIATGLVYTLLSLLIKKLGPRWLMKLFPPVVTGPVVMLIGLSLI 140 (415)
T ss_pred eeeeeecCcHHHHHHHHHHHh-----ccCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchhHHHhHHHHHHHHH
Confidence 489999999999999874332 257999999999999999999985 3 35789999999999999999999999
Q ss_pred hccCCCccc--------------ceeechhHHHHHHHHHhhchhhhhcCcccccchhhhHHHHHHHHHHHHHhhccccCC
Q 013911 84 EFGFPGVAK--------------CVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYND 149 (434)
Q Consensus 84 ~~g~~~~~~--------------~~~i~~~~l~~ii~l~~~~k~~~~~~~~~l~~~aiLigivvG~~~a~~~g~~~~~~~ 149 (434)
+.++++.+. ++.+++.++++++++.++.|+ ++|++++|+|+++||++++.+|.
T Consensus 141 ~i~l~~~~g~~~~~~~~~~~~~~~~~vg~~~l~~~vl~~~~~~g-------~~~~~aiLigiv~g~i~a~~lg~------ 207 (415)
T TIGR00801 141 PVAVKMAAGGEAAMSSATYGSLENLGVAFVVLALIILLNRFGKG-------FLKSISILIGILVGYILALFMGI------ 207 (415)
T ss_pred HHHHHHhccCCCcccccccCchhhHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHcCC------
Confidence 998876531 234666667666666666554 57899999999999999998874
Q ss_pred CCCCccceeccccCCCccCCCceecccCCCCCCCccChhhHHHHHHHHHHHHHhhcchhhhhhhhcCCCCCCcccccccc
Q 013911 150 AAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGV 229 (434)
Q Consensus 150 ~~~~~~~~~~vd~~~~v~~~p~f~~P~~~~~g~P~f~~~~i~~~~~i~lv~~~esig~~~a~~~~~~~~~~~~~~i~r~~ 229 (434)
+|+++ +.++||+++|.+++|| |+||+..+..++++++++++|++|+++++++.+++++++++++||++
T Consensus 208 ----------~~~~~-v~~~~~~~lP~~~~~g-~~f~~~~~~~~~~i~lv~~~es~g~~~a~a~~~g~~~~~~~~~~r~l 275 (415)
T TIGR00801 208 ----------VDFSP-VIDAPWFSLPTPFTFG-PSFEWPAILTMLPVAIVSLVESIGDITATADVSGRDLSGDPRLHRGV 275 (415)
T ss_pred ----------ccchh-hccCcccccCCccCCC-ceecHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCCCCCccccchH
Confidence 35543 5678999999988888 79999999999999999999999999999999886554478899999
Q ss_pred cchhhhhhhhccccccccceeeeecceeeeeeeeCceeEEEechhHHHHHHhhhcccceecccchHHHHHHHHHHHHHhh
Q 013911 230 GWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVG 309 (434)
Q Consensus 230 ~~dGl~~ilaglfG~~~~tt~~~~n~g~i~~Tgv~SR~~~~~a~~~lill~l~pk~~al~a~IP~pV~gg~liv~fg~i~ 309 (434)
.+||++|+++|+||++|.|+|+ ||+|+++.||++||++..++|+++++++++||++++++.||.||+||+++++|+++.
T Consensus 276 ~adGl~~i~aglfG~~p~t~~s-en~g~~~~T~~~sr~~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~l~~~~~i~ 354 (415)
T TIGR00801 276 LADGLATLLAGLFGGFPNTTFA-QNIGVIALTRVASRWVIVGAAVILIALGFFPKIAALITSIPSPVLGGASIVMFGMIA 354 (415)
T ss_pred HHhhHHHHHHHhcCCCCCcchh-hhheeeeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcchhhhccccccchhhhhhhhhhhccCh---hhhHHHhhhhcCcCcccccccccccccccccCChhhHHHHHHHHhh
Q 013911 310 AGGLSFLQFCNLNSFRVKFILGFSIFIGLSV---PQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLD 386 (434)
Q Consensus 310 ~~Gi~~l~~~~~~~~rn~~ivg~sl~~Gl~~---p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~~gi~~g~l~ai~Ln 386 (434)
.+|+|.+.+.++|++||.+++++|+.+|+++ |+++++ +| +++||+++|+++|++||
T Consensus 355 ~~gi~~l~~~~~~~~r~~~i~~~s~~~g~~~~~~p~~~~~----------------~p-----~~~~g~~~g~~~ai~Ln 413 (415)
T TIGR00801 355 ASGIRILIRNKLDNRRNRNIIAASVGLGLGVTGVPDIFGN----------------FP-----LLLSGIALAGIVAILLN 413 (415)
T ss_pred HHHHHHHHhCccCcccceehHHHHHHHHHHHhccHHHHhh----------------Cc-----hhcccHHHHHHHHHHHh
Confidence 9999999999998689999999999999997 887766 56 88999999999999999
Q ss_pred cc
Q 013911 387 NT 388 (434)
Q Consensus 387 ~~ 388 (434)
++
T Consensus 414 ~~ 415 (415)
T TIGR00801 414 LI 415 (415)
T ss_pred cC
Confidence 74
No 8
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=100.00 E-value=1.3e-51 Score=423.81 Aligned_cols=317 Identities=31% Similarity=0.537 Sum_probs=240.8
Q ss_pred ccccccceEeeeeeeEEEecccCCChhHHHHHHHHhhhhHHHHHhHHHHHHhhhhhhHHHHHhcCCCccchhhhhhhchh
Q 013911 3 CAFKHHTTVINISLFWVVTLLSRFDAIQKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGL 82 (434)
Q Consensus 3 ~~~~rlP~v~G~Sfa~i~~~~~~~~~~~~~~~~~~~~~ga~~vaGli~~llg~~gl~~~l~~~fppvV~G~~i~lIGl~l 82 (434)
.+++|+|+++|+||++++......+..+.++++||+++|+++++|++++++++++.++|++|+|||.|.|.++++||+++
T Consensus 56 ~~g~~lpl~~G~s~~~~~~~~~~~g~~~~~~~~~~~~~g~~~i~gi~~~~l~~~g~~~~l~~~~pp~v~g~v~~~IGl~L 135 (389)
T PF00860_consen 56 PAGHRLPLVPGPSFAFIFAFMIVIGMAESGGYGLQAALGAVLISGILFILLGLTGLRKRLRRLFPPVVKGAVVLLIGLSL 135 (389)
T ss_dssp HTTT-----EEE-GGGHHHHHGGG-----HHHHHHHHHHHHHHHHHHHHHHHTT-SH-HHHHH--HHHHHHHHHHHHHHH
T ss_pred cCCCceecccccchhhhhhhhcccccccchhhchhhhhhHHHHHHHHHHHHHHhchHHHHHHHhChhheEeeEeeehhhh
Confidence 37899999999999999944422221134678999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCcccce--------------eechhHHHHHHHHHhhchhhhhcCcccccchhhhHHHHHHHHHHHHHhhccccC
Q 013911 83 YEFGFPGVAKCV--------------EIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYN 148 (434)
Q Consensus 83 ~~~g~~~~~~~~--------------~i~~~~l~~ii~l~~~~k~~~~~~~~~l~~~aiLigivvG~~~a~~~g~~~~~~ 148 (434)
.+.++++.+..+ .++..+++..+.+..+. ++++|++++++|+++||++++.+|..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ailigi~~g~i~~~~~g~~---- 204 (389)
T PF00860_consen 136 APIGLKNAGGIWGNPDGLLVGDGKNLGLAVLTLLFILLLSLFL-------KGFLRKGAILIGIIAGWIVAAILGVV---- 204 (389)
T ss_dssp HHHHHHHTTSS---BTT-B---HHHHHHHHHHHHHHHHHHHSS-------STTTTTHHHHHHHHHHHHHHHHHHHT----
T ss_pred hhhHhhccccccccccccccccccccccccccchhhhhhhhhh-------hhhcccccchhhhhhhhhhhhccccc----
Confidence 999887654221 23334444444444443 55788999999999999999999853
Q ss_pred CCCCCccceeccccCCCccCCCceecccCCCCCCCccChhhHHHHHHHHHHHHHhhcchhhhhhhhcCCCCCCccccccc
Q 013911 149 DAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRG 228 (434)
Q Consensus 149 ~~~~~~~~~~~vd~~~~v~~~p~f~~P~~~~~g~P~f~~~~i~~~~~i~lv~~~esig~~~a~~~~~~~~~~~~~~i~r~ 228 (434)
|+++.+.++||+++|.+++|++|+||+..+++++.+++++++|++||+.++++..++++++++++||+
T Consensus 205 ------------~~~~~~~~~~~~~~p~~~~~g~p~f~~~~i~~~~~~~lv~~~es~G~~~a~~~~~~~~~~~~~~~~r~ 272 (389)
T PF00860_consen 205 ------------DFSPSVSSAPWFSLPSPFPFGWPSFDPGAILTFLIFALVAMFESIGTIVAVARIAGKDDPRPPRIRRG 272 (389)
T ss_dssp ------------TSSH-HHHS-SS--------------HHHHHHHTHHHHHHHHHHHHHHHHHHHHHTS-TCCCCCHHHH
T ss_pred ------------ccCcccccccccccccccccccccccHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCCccchhhccc
Confidence 44432677999999999999999999999999999999999999999999999998776668999999
Q ss_pred ccchhhhhhhhccccccccceeeeecceeeeeeeeCceeEEEechhHHHHHHhhhcccceecccchHHHHHHHHHHHHHh
Q 013911 229 VGWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYV 308 (434)
Q Consensus 229 ~~~dGl~~ilaglfG~~~~tt~~~~n~g~i~~Tgv~SR~~~~~a~~~lill~l~pk~~al~a~IP~pV~gg~liv~fg~i 308 (434)
+.+||++|+++|+||+.|.|+|+ ||+|.++.||++||++...+++++++++++||++++++.||.||++|++++++|++
T Consensus 273 l~~dg~~~~l~gl~G~~~~t~~~-en~g~i~~t~v~Sr~~~~~a~~~~i~~~~~p~~~~l~~~IP~~v~gg~~lv~~g~i 351 (389)
T PF00860_consen 273 LLADGLGTILAGLFGTSPTTTYS-ENAGGIAATGVASRRVGLTAGVILILFGLSPKFAPLFASIPSPVIGGPLLVLFGMI 351 (389)
T ss_dssp HHHHHHHHHHHHHHT---EEE-H-HHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred ceeeeeeeeechhhcCCCCcccc-ccchhhhhhccccceeeeHHHHHHHHHhhHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred hccCcchhhhccccccchhhhhhhhhhhccChhhh
Q 013911 309 GAGGLSFLQFCNLNSFRVKFILGFSIFIGLSVPQY 343 (434)
Q Consensus 309 ~~~Gi~~l~~~~~~~~rn~~ivg~sl~~Gl~~p~~ 343 (434)
+.+|+|.+++.|+||+||.+++++++.+|++++.+
T Consensus 352 ~~~gi~~i~~~~~~~~r~~~iv~~~l~~g~~i~~~ 386 (389)
T PF00860_consen 352 MMSGIRNIDWVDLDSARNAFIVGLSLPLGLSIAFG 386 (389)
T ss_dssp HHHHHHHHHHTTS-SHHHHHHHHHHHHHHHH----
T ss_pred HHHHhHhheecccCccccHHHHHHhHHHHHHHhcc
Confidence 99999999999999899999999999999998654
No 9
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]
Probab=99.88 E-value=9.5e-23 Score=208.29 Aligned_cols=293 Identities=16% Similarity=0.174 Sum_probs=209.8
Q ss_pred HHHHhhhhHHHHHhHHHHHHhhhhhhHHHHHhcCC-------CccchhhhhhhchhhhccCCC------cc---c-ceee
Q 013911 34 RTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSP-------LSVVPLISLVGFGLYEFGFPG------VA---K-CVEI 96 (434)
Q Consensus 34 ~~~~~~~ga~~vaGli~~llg~~gl~~~l~~~fpp-------vV~G~~i~lIGl~l~~~g~~~------~~---~-~~~i 96 (434)
..||+++++++++|+++++++++|+|++++|.+|. .-+|.++.+||+......+.+ ++ + ...+
T Consensus 99 i~wq~AL~aVF~sGiif~ils~t~iR~~ii~~IP~~lk~ai~aGIGlFia~IgL~~~Givv~~~~tlv~LG~~~~p~vll 178 (436)
T COG2252 99 LSWQVALGAVFLSGIIFLLLSLTGIREWIINAIPRSLKLAIGAGIGLFIALIGLKNAGIVVANPATLVALGDFTSPGVLL 178 (436)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhCCeEEecCcceEEeecCCCchHHH
Confidence 36999999999999999999999999999999996 346777777777644332211 11 1 2334
Q ss_pred chhHHHHHHHHHhhchhhhhcCcccccchhhhHHHHHHHHHHHHHhhccccCCCCCCccceeccccCCCccCCCceeccc
Q 013911 97 GLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPW 176 (434)
Q Consensus 97 ~~~~l~~ii~l~~~~k~~~~~~~~~l~~~aiLigivvG~~~a~~~g~~~~~~~~~~~~~~~~~vd~~~~v~~~p~f~~P~ 176 (434)
++..+++++.+ ..|++ +.+++++|+..+++++++|.... + .+.....|.. .|.
T Consensus 179 ~i~G~~l~~~L--~~~~i---------~Gaili~i~~~t~~g~~~g~~~~--------------~-~~~~~~~p~~-~~~ 231 (436)
T COG2252 179 AILGLLLIIVL--VSRKI---------KGAILIGILVTTILGIILGIDVH--------------F-GGLVGAPPSL-SPI 231 (436)
T ss_pred HHHHHHHHHHH--HHhhc---------cHhhhHHHHHHHHHHHHhccccc--------------c-cccccCCCCc-cch
Confidence 55555555555 44544 68999999999999999985311 0 0001111111 111
Q ss_pred CCCCCCC--ccChhhHHHHHHHHHHHHHhhcchhhhhhhhcCCCC--CCcccccccccchhhhhhhhccccccccceeee
Q 013911 177 PFQWGAP--SFDAGEAFAMMMASFVALVESTGAFFAVARYASATP--MPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSV 252 (434)
Q Consensus 177 ~~~~g~P--~f~~~~i~~~~~i~lv~~~esig~~~a~~~~~~~~~--~~~~~i~r~~~~dGl~~ilaglfG~~~~tt~~~ 252 (434)
..+.+.. ...+..+...+.+.+++++|++|++.++++..+..+ .+.++++|.+.+|++++++++++|+.|.|+|.
T Consensus 232 ~~~~d~~~~~~~~~~~~~if~f~~~~~FD~~GTl~gv~~~ag~~~~~g~~~~~~~al~~D~v~t~~ga~~GtS~~t~yI- 310 (436)
T COG2252 232 FGQLDLSGNLSLAAFAPVIFTFFFVDLFDTLGTLIGVASKAGLLDKNGKMPRIGKALLADSVATVVGALFGTSTVTAYI- 310 (436)
T ss_pred hhHhhhccchhhHHHHHHHHHHHHHHHhcchHHHHHHHHhcCCcCCCCCccccchHHHHhHHHHHHHHhcCCcchhhhh-
Confidence 1111111 122455567788999999999999999999987543 23579999999999999999999999999999
Q ss_pred ecceeeeeeeeCceeEEEechhHHHHHHhhhcccceecccchHHHHHHHHHHHHHhhccCcchhhhccccccchhhhhhh
Q 013911 253 ENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNLNSFRVKFILGF 332 (434)
Q Consensus 253 ~n~g~i~~Tgv~SR~~~~~a~~~lill~l~pk~~al~a~IP~pV~gg~liv~fg~i~~~Gi~~l~~~~~~~~rn~~ivg~ 332 (434)
|+...++..|.+.-...+.+.++++.+.+.| +...+|..+.++++++ .|.++. +.++++||+|..+.
T Consensus 311 ESaaGva~GgrTGltavv~g~lFl~~lf~~P----l~~~vP~~AtapaLi~-vG~lM~---~~v~~id~~d~~ea----- 377 (436)
T COG2252 311 ESAAGVAAGGRTGLTAVVTGLLFLLSLFFSP----LAALVPGYATAPALII-VGALML---SSVKQIDWSDFTEA----- 377 (436)
T ss_pred hcccccccccccccHHHHHHHHHHHHHHHHH----HHHhCcHhhhhHHHHH-HHHHHH---hhhccCCchhhhhh-----
Confidence 9999888866666555666667766655445 9999999999999998 465665 55568888876553
Q ss_pred hhhhccChhhhHHHhhhhcCcCcccccccccccccccccCChhhHHHHHHHHhhcccc
Q 013911 333 SIFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDNTLH 390 (434)
Q Consensus 333 sl~~Gl~~p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~~gi~~g~l~ai~Ln~~~~ 390 (434)
+|.+..-.. +| +.+-..+|++.|.+.+.+++....
T Consensus 378 -------~PaF~tiv~--------------mp--lTySIa~Gia~Gfi~y~i~k~~~g 412 (436)
T COG2252 378 -------VPAFLTIVM--------------MP--LTYSIADGIAFGFISYVILKVFTG 412 (436)
T ss_pred -------hHHHHHHHH--------------HH--HHHHHHhhHHHHHHHHHHHHHHhh
Confidence 366555432 44 566778999999999999988554
No 10
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.1e-21 Score=209.46 Aligned_cols=247 Identities=17% Similarity=0.233 Sum_probs=182.5
Q ss_pred HHHHHhhhhHHHHHhHHHHHHhhhhhhHHHHHhcCCCccchhhhhhhchhhhccCCCc------cc--------------
Q 013911 33 KRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGV------AK-------------- 92 (434)
Q Consensus 33 ~~~~~~~~ga~~vaGli~~llg~~gl~~~l~~~fppvV~G~~i~lIGl~l~~~g~~~~------~~-------------- 92 (434)
+++++.++-+++++|++++++|++|+ +++.+++|+.|+-.++..||+.++..+++.+ ..
T Consensus 94 ~~g~~~~~~~tllaGv~~i~~G~lRL-G~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~~~~~~~~~~~~~l~~~~~ 172 (554)
T COG0659 94 ETGLALAFLATLLAGVFQILLGLLRL-GRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLASKVSGFWAKVSALFTVLL 172 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchHHHHHHHHHhcc
Confidence 58999999999999999999999998 9999999954444445666765555443321 00
Q ss_pred --c---eeechhHHHHHHHHHhhchhhhhcCcccccchhhhHHHHHHHHHHHHHhhccccCCCCCCccceeccccCCCcc
Q 013911 93 --C---VEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLID 167 (434)
Q Consensus 93 --~---~~i~~~~l~~ii~l~~~~k~~~~~~~~~l~~~aiLigivvG~~~a~~~g~~~~~~~~~~~~~~~~~vd~~~~v~ 167 (434)
+ +.++..++++++ +.+++ ..|.|+.|+++++++.+++.++.... +.+ +...
T Consensus 173 ~~~~~~~~lg~~~l~il~----~~~~~------~~~~P~~liaiv~~t~i~~~~~~~~~------------~~G--~i~~ 228 (554)
T COG0659 173 TINLATLLLGLLTLAILL----FLPRL------TPRIPSPLIALVLGTLIVWIFPLDSL------------RYG--EIPG 228 (554)
T ss_pred cccHHHHHHHHHHHHHHH----Hccch------hhhCCcHHHHHHHHHHHHHHhcCCch------------hcc--cCcc
Confidence 1 123333333332 23332 13578899999999999998865210 011 1111
Q ss_pred CCCceecccC-CCCCCCccChhh----HHHHHHHHHHHHHhhcchhhhhhhhcCCCCCCcccccccccchhhhhhhhccc
Q 013911 168 AAPWIRVPWP-FQWGAPSFDAGE----AFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLF 242 (434)
Q Consensus 168 ~~p~f~~P~~-~~~g~P~f~~~~----i~~~~~i~lv~~~esig~~~a~~~~~~~~~~~~~~i~r~~~~dGl~~ilaglf 242 (434)
+ +|.. .+|+.|.+++.. +...+.++++.++|++.+.++.+++.++ +.+.|||+++||++|+.+|+|
T Consensus 229 ~-----lp~~~~~~~~P~~~~~~~~~l~~~al~la~lg~iesllta~~~~~~~~~----~~d~nrELiaqGiaNi~sglf 299 (554)
T COG0659 229 S-----LPSGLPHFRLPNVSLSLLLALLPYALALALLGLLESLLTAVSFDGMTGT----KHDSNRELIAQGIANIASGLF 299 (554)
T ss_pred c-----CCcCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCCHHHHHhhHHHHHHHHh
Confidence 1 2322 145566666544 4456789999999999999999998864 457799999999999999999
Q ss_pred cccccceeeeecceeeeeeeeCceeEEEechhHHHHHHhhhcccceecccchHHHHHHHHH-HHHHhhccCcchh
Q 013911 243 GTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCL-FFAYVGAGGLSFL 316 (434)
Q Consensus 243 G~~~~tt~~~~n~g~i~~Tgv~SR~~~~~a~~~lill~l~pk~~al~a~IP~pV~gg~liv-~fg~i~~~Gi~~l 316 (434)
|++|.|... .+...+..+|.+||.+.++++++++++-++ +++++..||.+++++++++ .++++....++.+
T Consensus 300 gg~p~~g~~-srS~~nv~sGarT~lsgi~~a~~lll~l~~--~~~~~~~IP~a~Laavli~v~~~l~~~~~~~~~ 371 (554)
T COG0659 300 GGIPATGSI-SRSAINIKSGARTRLSGIIHAALLLLLLLF--LAPLVSYIPLAALAAVLILVGWGLLDWSLLKPL 371 (554)
T ss_pred CCccccchh-HHHHHHHHhCCcChHHHHHHHHHHHHHHHH--HHHHHHhCcHHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999 888888889999999999999987776654 7889999999999999887 5777777666654
No 11
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=99.71 E-value=2.8e-17 Score=176.87 Aligned_cols=246 Identities=16% Similarity=0.168 Sum_probs=165.6
Q ss_pred HHHHhhhhHHHHHhHHHHHHhhhhhhHHHHHhcCCCccchhhhhhhchhhhc------cCCCc-----------------
Q 013911 34 RTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEF------GFPGV----------------- 90 (434)
Q Consensus 34 ~~~~~~~ga~~vaGli~~llg~~gl~~~l~~~fppvV~G~~i~lIGl~l~~~------g~~~~----------------- 90 (434)
+..+.+....+++|++++++|++|+ +++.+++|..|+..++..+|+.++.. |.+..
T Consensus 94 ~~~~~a~~l~~l~Gi~~~~~g~lrl-G~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~l 172 (563)
T TIGR00815 94 DAIRLAFTLTLLAGIFQVILGLLRL-GFLIEFLSHAVISGFMTGAAITIGLSQLKGLLGISIFNTRTDTLGVVISTWAGL 172 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHh
Confidence 3456677889999999999999998 99999999655555555556544422 22210
Q ss_pred cc----cee---echhHHHHHHHHHhhchhhhhcCccc--ccchhhhHHHHHHHHHHHHHhhccccCCCCCCccceeccc
Q 013911 91 AK----CVE---IGLPQLVIIVFISQYLPHVIKRGKNI--FDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTD 161 (434)
Q Consensus 91 ~~----~~~---i~~~~l~~ii~l~~~~k~~~~~~~~~--l~~~aiLigivvG~~~a~~~g~~~~~~~~~~~~~~~~~vd 161 (434)
.+ |+. ++..+++++. ..|++.++.++. ...+..|+.+++++++.+.++... + .+.
T Consensus 173 ~~~~~~~~~~~~i~~~~~~~l~----~~~~~~~~~~~~~~~~~p~~li~vi~~~~~~~~~~~~~-~-----------~~~ 236 (563)
T TIGR00815 173 PNTHNWNWCTLVIGLVLLLFLL----YTKKLGKRNKKLLFAPAVAPLLVVILATLAVTIGLHKK-Q-----------GVS 236 (563)
T ss_pred hhccccchHHHHHHHHHHHHHH----HHHHhhhhccchhcccccHHHHHHHHHHHHHHHHccCC-C-----------CeE
Confidence 00 111 1222222222 233332211111 224678999999998877663210 0 011
Q ss_pred cCCCccCCCceecccCCCCCCCccChhhH----HHHHHHHHHHHHhhcchhhhhhhhcCCCCCCcccccccccchhhhhh
Q 013911 162 RAGLIDAAPWIRVPWPFQWGAPSFDAGEA----FAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGIL 237 (434)
Q Consensus 162 ~~~~v~~~p~f~~P~~~~~g~P~f~~~~i----~~~~~i~lv~~~esig~~~a~~~~~~~~~~~~~~i~r~~~~dGl~~i 237 (434)
. +.+.|- .+| .+..|.+||..+ ...+.++++.++|++...++.++..++ +.+.||+++++|++|+
T Consensus 237 ~---~g~ip~-g~p---~~~~~~~~~~~~~~l~~~a~~ia~v~~~e~l~~a~~~~~~~~~----~~d~n~El~a~G~~N~ 305 (563)
T TIGR00815 237 I---LGHIPS-GLS---FFPPITLDWELLPTLAPDAIAIAIVGLIESIAIARSFARMTGY----KIDANQELVAQGIANI 305 (563)
T ss_pred E---EeecCC-CCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCCCcHHHHHhhHHHH
Confidence 1 111110 122 344566776544 445789999999999999999887653 3567999999999999
Q ss_pred hhccccccccceeeeecceeeeeeeeCceeEEEechhHHHHHHhhhcccceecccchHHHHHHHHHH-HHHhhc
Q 013911 238 LSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLF-FAYVGA 310 (434)
Q Consensus 238 laglfG~~~~tt~~~~n~g~i~~Tgv~SR~~~~~a~~~lill~l~pk~~al~a~IP~pV~gg~liv~-fg~i~~ 310 (434)
++|+||++|.+... .+..+...+|.++|.+.++++++++++.++ +++++..+|.+++++++++. +.++.+
T Consensus 306 ~~~~fg~~p~~~s~-srs~~~~~~G~~t~~a~i~~~~~~l~~~l~--~~~~l~~iP~~~la~ili~~~~~l~~~ 376 (563)
T TIGR00815 306 VGSFFSCYPATGSL-SRTAVNAKAGCRTQLSGVVTAIVVLLVLLV--LTPLFYYIPQAALAAIIISAVRGLIDY 376 (563)
T ss_pred HHHHhCccCCCCcc-hHHHHHHhcCCcchHHHHHHHHHHHHHHHH--HHHHHHhChHHHHHHHHHHHHhcccCH
Confidence 99999999999888 777888889999999999999887666555 56799999999999999973 443333
No 12
>PRK11660 putative transporter; Provisional
Probab=99.70 E-value=2.9e-17 Score=176.95 Aligned_cols=248 Identities=14% Similarity=0.197 Sum_probs=157.7
Q ss_pred HHHHhhhhHHHHHhHHHHHHhhhhhhHHHHHhcCCCccchhhhhhhchhhhccCCCc--------c--------------
Q 013911 34 RTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGV--------A-------------- 91 (434)
Q Consensus 34 ~~~~~~~ga~~vaGli~~llg~~gl~~~l~~~fppvV~G~~i~lIGl~l~~~g~~~~--------~-------------- 91 (434)
++++.+..+.+++|++++++|++|+ +++.+++|.-|+..++..+|+.++..+++.. +
T Consensus 100 ~~~~~~~~~~~l~Gii~~l~gllrl-G~l~~fip~pVi~Gf~~g~al~I~~~Ql~~~lG~~~~~~~~~~~~~l~~~~~~l 178 (568)
T PRK11660 100 FGLAGLLVATLMSGIILILMGLARL-GRLIEYIPLSVTLGFTSGIGIVIATLQIKDFFGLQMAHVPEHYLEKVGALFQAL 178 (568)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhh-hHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHHhh
Confidence 4567777889999999999999997 8999999954444444444543333222111 0
Q ss_pred -c-ce---eechhHHHHHHHHHhhchhhhhcCcccccchhhhHHHHHHHHHHHHHhhccccCCCCCCccceecc-ccC--
Q 013911 92 -K-CV---EIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRT-DRA-- 163 (434)
Q Consensus 92 -~-~~---~i~~~~l~~ii~l~~~~k~~~~~~~~~l~~~aiLigivvG~~~a~~~g~~~~~~~~~~~~~~~~~v-d~~-- 163 (434)
+ ++ .+++.++++++. .+++ ..|.++.++.+++++++++.++..+. +-+..+....... |-.
T Consensus 179 ~~~~~~~~~~~~~~l~lll~----~~~~------~~~iP~~li~iiv~t~~~~~~~~~~~-~v~~vg~~~~~~~~~g~~~ 247 (568)
T PRK11660 179 PTINWGDALIGIVTLGVLIL----WPRL------KIRLPGHLPALLAGTAVMGVLNLLGG-HVATIGSRFHYVLADGSQG 247 (568)
T ss_pred ccCCHHHHHHHHHHHHHHHH----HHhh------cccCchHHHHHHHHHHHHHHHhccCC-Cceeecccccccccccccc
Confidence 0 11 233333333322 2222 12457789999999999988865310 0000000000000 000
Q ss_pred CCcc-CCCceecccCCCCCCC-------ccChhh----HHHHHHHHHHHHHhhcchhhhhhhhcCCCCCCcccccccccc
Q 013911 164 GLID-AAPWIRVPWPFQWGAP-------SFDAGE----AFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGW 231 (434)
Q Consensus 164 ~~v~-~~p~f~~P~~~~~g~P-------~f~~~~----i~~~~~i~lv~~~esig~~~a~~~~~~~~~~~~~~i~r~~~~ 231 (434)
..+. ..|-+.+| |..| .+||+. +...+.++++..+|++.+.++.++..++ +.+.||++++
T Consensus 248 ~~ip~~~p~~~~p----~~~~~~~~~~~~~~~~~~~~ll~~a~~iaiv~~iesl~~~~~~~~~~~~----~~d~n~EL~a 319 (568)
T PRK11660 248 NGIPPLLPQFVLP----WNLPGADGQPFTLSWDLIRALLPAAFSMAMLGAIESLLCAVVLDGMTGT----KHSANSELVG 319 (568)
T ss_pred cCCCCCCCCCCCC----ccccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCcHHHHH
Confidence 0000 01112222 1111 246554 3455688899999999888888877653 3468999999
Q ss_pred hhhhhhhhccccccccceeeeecceeeeeeeeCceeEEEechhHHHHHHhhhcccceecccchHHHHHHHHHH
Q 013911 232 QGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLF 304 (434)
Q Consensus 232 dGl~~ilaglfG~~~~tt~~~~n~g~i~~Tgv~SR~~~~~a~~~lill~l~pk~~al~a~IP~pV~gg~liv~ 304 (434)
+|++|+++|+||++|++++. .+..+...+|.++|.+.+++++++++.-++ +++++..||.+++++++++.
T Consensus 320 ~G~aNi~~~~fgg~p~~~s~-srSa~n~~aGarT~la~iv~a~~~ll~ll~--l~~ll~~iP~~vLa~ili~~ 389 (568)
T PRK11660 320 QGLGNIVAPFFGGITATAAI-ARSAANVRAGATSPISAVIHALLVLLALLV--LAPLLSYLPLSAMAALLLMV 389 (568)
T ss_pred HhHHHHHHHHhCcccccchH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHH--HHHHHHhCcHHHHHHHHHHH
Confidence 99999999999999999997 666777788999999998888876544332 45699999999999999873
No 13
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=99.67 E-value=1.1e-16 Score=163.39 Aligned_cols=261 Identities=16% Similarity=0.203 Sum_probs=177.2
Q ss_pred cccccceEeeeeeeEEEecccCCChhHHHHHHHHhhhhHHHHHhHHHHHHhhhhhhHHHHHhcCCCccchhhhhhhchhh
Q 013911 4 AFKHHTTVINISLFWVVTLLSRFDAIQKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLY 83 (434)
Q Consensus 4 ~~~rlP~v~G~Sfa~i~~~~~~~~~~~~~~~~~~~~~ga~~vaGli~~llg~~gl~~~l~~~fppvV~G~~i~lIGl~l~ 83 (434)
.++|+|++++.| .+-..++..+.++ .+++++.|+.+++|++.+++|++|.++|++|.+|+.+.+.++..+.+...
T Consensus 76 ~~~r~Pi~~awS-tPGaAll~~~~~~----~~~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amLAGIlL~f~ 150 (395)
T TIGR00843 76 IRFKTPVLTAWS-APGAALLVTGFPG----ISLNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAMLAGILFQFG 150 (395)
T ss_pred HHHcCCeeeecC-chHHHHHHHhcCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 456999999999 5544555332221 47999999999999999999999999999999999998887766655543
Q ss_pred hccCCCcccceeechhHHHHHHHHHhhchhhhhcCcccccchhhhHHHHHHHHHHHHHhhccccCCCCCCccceeccccC
Q 013911 84 EFGFPGVAKCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRA 163 (434)
Q Consensus 84 ~~g~~~~~~~~~i~~~~l~~ii~l~~~~k~~~~~~~~~l~~~aiLigivvG~~~a~~~g~~~~~~~~~~~~~~~~~vd~~ 163 (434)
...++...+.+.++...++..+ ..| |+.+++++++++++|.++++..|.. |.+
T Consensus 151 l~~~~a~~~~pll~~~mll~~l----~~~-------r~~Pr~avl~aLlvG~iva~~~G~~----------------~~~ 203 (395)
T TIGR00843 151 LGAFAALDGLFLICFSMLLCWL----ASK-------AFAPRYAMIAALICGIAFSFALGDM----------------NPT 203 (395)
T ss_pred HHHHHHHHHhHHHHHHHHHHHH----HHH-------HhcchHHHHHHHHHHHHHHHHhcCC----------------Ccc
Confidence 3333333334433322222211 222 3456799999999999999988743 111
Q ss_pred CCccCCCceecccCCCCCCCccChhhHHH-HHHHHHHHHHhhcchhhhhhhhcCCCCCCcccccccccchhhhhhhhccc
Q 013911 164 GLIDAAPWIRVPWPFQWGAPSFDAGEAFA-MMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLF 242 (434)
Q Consensus 164 ~~v~~~p~f~~P~~~~~g~P~f~~~~i~~-~~~i~lv~~~esig~~~a~~~~~~~~~~~~~~i~r~~~~dGl~~ilaglf 242 (434)
+ ++. + +..| .|-.|+||+...+. .++.+++.+....-.-.++.|..+++. +.|+-+..+|++|++++.|
T Consensus 204 ~-~~~-~-l~~p---~~~~P~fs~~a~~~l~lPl~~vtm~~qnlpgiavl~aaGy~~----p~~~~~~~tGl~sll~Apf 273 (395)
T TIGR00843 204 D-LDF-K-IALP---QFIAPDFSFAHSLNLALPLFLVSLAGQFAPGIAALKAAGYNA----PAKPIIAAAGLAALFAAFA 273 (395)
T ss_pred c-ccc-c-cccc---eeeCCCCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHcCCCC----CchHHHHHHHHHHHHHhcc
Confidence 1 110 0 1222 45568898877664 357777888777655566677766543 3699999999999999999
Q ss_pred cccc------cceeeeecceeeeeeeeCceeE-EEechhHHHHHHhh-hcccceecccchHHHHHHH-HHHHHHhh
Q 013911 243 GTVN------GTSVSVENAGLLALTRVGSRRV-VQISAGFMIFFSVL-GKFGAVFASIPAPIVAALY-CLFFAYVG 309 (434)
Q Consensus 243 G~~~------~tt~~~~n~g~i~~Tgv~SR~~-~~~a~~~lill~l~-pk~~al~a~IP~pV~gg~l-iv~fg~i~ 309 (434)
|+.+ +++.. . |--+--.-..|+. .+.+|++.++++++ +.+..+++.+|.+.+..+- +.+++.+.
T Consensus 274 Gg~~~nlaaitaAic-~--G~~ah~d~~rR~~a~i~~Gv~yll~glfag~i~~l~~~~P~~li~~laGlAll~~~~ 346 (395)
T TIGR00843 274 GGISIGIAAITAAIC-M--GKDAHEDKDKRWIAAAAAGIFYLLAGLFAGAITALFAALPKELIAALAGLALLGAIA 346 (395)
T ss_pred CCchhhhhHHhHHHh-c--CcccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 9998 33333 1 1111112233333 48889999999999 8889999999999887663 33566655
No 14
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.58 E-value=3.2e-16 Score=153.98 Aligned_cols=241 Identities=18% Similarity=0.179 Sum_probs=156.5
Q ss_pred HhhhhhhHHHHHhcCCCccchhhhhhhchhhhccCCCc------------c-----------c--ce---eechhHHHHH
Q 013911 53 LGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGV------------A-----------K--CV---EIGLPQLVII 104 (434)
Q Consensus 53 lg~~gl~~~l~~~fppvV~G~~i~lIGl~l~~~g~~~~------------~-----------~--~~---~i~~~~l~~i 104 (434)
+|++|+ +++.+++|.-|+..++..+|+.++..+++.+ . + ++ .++..+++.+
T Consensus 1 lGllrl-G~l~~~ip~pVi~Gf~~g~ai~I~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 79 (280)
T PF00916_consen 1 LGLLRL-GFLVRFIPRPVISGFLAGIAILIIFSQLPNLLGIPVVPSHEGLFSFIRALFQLISTITNWPTLAIGLVALVFL 79 (280)
T ss_pred Cccccc-cHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhccchhhhhhhhHHHHHH
Confidence 467787 9999999965555556666665444332211 0 0 11 1222222222
Q ss_pred HHHHhhchhhhhcCcccccchhhhHHHHHHHHHHHHHhhccccCCCCCCccceeccccCCCc-cCCCceecccCCCCCCC
Q 013911 105 VFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLI-DAAPWIRVPWPFQWGAP 183 (434)
Q Consensus 105 i~l~~~~k~~~~~~~~~l~~~aiLigivvG~~~a~~~g~~~~~~~~~~~~~~~~~vd~~~~v-~~~p~f~~P~~~~~g~P 183 (434)
.....+.++. ..+...+.+..++.+++++++++.+.... ..++..+.+ ...|.+.+|. .
T Consensus 80 ~~~~~~~~~~--~~~~~~~~p~~li~vv~~~~~~~~~~~~~------------~~v~~~~~i~~~lp~~~~p~------~ 139 (280)
T PF00916_consen 80 LIIRLLPKRL--PSRFWPPIPAPLIVVVLGTLLSWLFLLDK------------YGVAIVGEIPSGLPPPSLPS------F 139 (280)
T ss_pred hhhhhhhhhc--cccccccccccceeeehhhhhhhhhhhcc------------ccccccccccccCccccCcc------c
Confidence 2221111111 11223456778999999999887774311 011211111 2233333332 0
Q ss_pred ccCh----hhHHHHHHHHHHHHHhhcchhhhhhhhcCCCCCCcccccccccchhhhhhhhccccccccceeeeecceeee
Q 013911 184 SFDA----GEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLA 259 (434)
Q Consensus 184 ~f~~----~~i~~~~~i~lv~~~esig~~~a~~~~~~~~~~~~~~i~r~~~~dGl~~ilaglfG~~~~tt~~~~n~g~i~ 259 (434)
.++| ..+...+.++++..+|++.+.++.++..++ +.+.|||++++|++|+++|+||++|++... .+..+..
T Consensus 140 ~~~~~~~~~~~~~a~~ia~v~~~~s~~~~~~~~~~~~~----~~d~n~El~a~G~aNi~s~~~gg~p~~~s~-srs~~~~ 214 (280)
T PF00916_consen 140 DISWSLILDLLPTALAIAIVGFIESLLIAKSIAKKTGY----RIDPNQELIALGLANIVSGLFGGMPGSGSF-SRSAVNY 214 (280)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHhhhhhcccccc----cCCcHHHHHHhhhccccchhhccccccccc-ccchHHH
Confidence 3333 344566789999999999999998887653 347899999999999999999999999999 7788888
Q ss_pred eeeeCceeEEEechhHHHHHHhhhcccceecccchHHHHHHHHH-HHHHhhccCcchhhhccc
Q 013911 260 LTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCL-FFAYVGAGGLSFLQFCNL 321 (434)
Q Consensus 260 ~Tgv~SR~~~~~a~~~lill~l~pk~~al~a~IP~pV~gg~liv-~fg~i~~~Gi~~l~~~~~ 321 (434)
.+|.+||.+.++++++++++-++ ++.++..+|.+++++++++ .+.++....++.++|.+.
T Consensus 215 ~~Ga~t~~s~~~~~~~~l~~l~~--~~~~l~~iP~~~La~ili~~~~~l~~~~~~~~~~~~~~ 275 (280)
T PF00916_consen 215 RAGARTRLSGLISALFVLLVLLF--LAPLLAYIPKAVLAAILIVVGISLIDWSSLRRLWRVSK 275 (280)
T ss_pred hcCcceeehhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCh
Confidence 89999999999998887665443 4569999999999999997 467777766666654443
No 15
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=99.40 E-value=7.5e-13 Score=144.62 Aligned_cols=258 Identities=17% Similarity=0.193 Sum_probs=169.1
Q ss_pred HHHHhhhhHHHHHhHHHHHHhhhhhhHHHHHhcC-CCccchhhhhhhchhhhc------cCCCcc---------------
Q 013911 34 RTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLS-PLSVVPLISLVGFGLYEF------GFPGVA--------------- 91 (434)
Q Consensus 34 ~~~~~~~ga~~vaGli~~llg~~gl~~~l~~~fp-pvV~G~~i~lIGl~l~~~------g~~~~~--------------- 91 (434)
+.++.+...++++|++|+++|++|+ |++.+++| |++.|++ ...++.+... |+++..
T Consensus 163 ~~i~va~~lt~l~Giiq~~mG~lrL-Gfl~~~lS~~~l~GFt-~gaa~~I~~sQlk~llGi~~~~~~~~~~~~~~~~~~~ 240 (665)
T KOG0236|consen 163 TTIQVATTLTFLTGIIQLILGLLRL-GFLVRFLSEPALSGFT-TGAALHIVTSQLKVLLGITSFPRHSGPGSIVFIVFDL 240 (665)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHccHHHHhHhh-hhhhhhhhHHhhHhhccccccCCCCCceeEEEeeHHh
Confidence 5788899999999999999999998 99999999 5666654 3333322222 222111
Q ss_pred --c------ceeechhHHHHHHHHHh-hchhhhhcCcccccchhhhHHHHHHHHHHHHHhhccccCCCCCCccceecccc
Q 013911 92 --K------CVEIGLPQLVIIVFISQ-YLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDR 162 (434)
Q Consensus 92 --~------~~~i~~~~l~~ii~l~~-~~k~~~~~~~~~l~~~aiLigivvG~~~a~~~g~~~~~~~~~~~~~~~~~vd~ 162 (434)
+ ++.+++..++++ .+.+ +.++. +++-.+...+.-++.+++++++++.+...+.+.. ..++
T Consensus 241 ~~~~~~~~~~~~~~l~~l~~L-~~~k~~~~~~-~~k~~~v~~~~~li~vIi~T~~~~~~~~~~~~~~--------~~~~- 309 (665)
T KOG0236|consen 241 LANLPKTLATLVLSLIFLVVL-LLTKELNPKF-KKKLFSVPIPFELIVVIIGTLISYIFRLEGRYGP--------IIVG- 309 (665)
T ss_pred hhcccccchhhhhHHHHHHHH-HHHHHhhhhh-cccceeecccHHHHHHHHHHHHHHHhccccccCC--------eeec-
Confidence 0 112222222222 2222 22221 0011113455689999999999998865321000 0010
Q ss_pred CCCccCCCceecccCCCCCCCccC--hhhHHHHHHHHHHHHHhhcchhhhhhhhcCCCCCCcccccccccchhhhhhhhc
Q 013911 163 AGLIDAAPWIRVPWPFQWGAPSFD--AGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSG 240 (434)
Q Consensus 163 ~~~v~~~p~f~~P~~~~~g~P~f~--~~~i~~~~~i~lv~~~esig~~~a~~~~~~~~~~~~~~i~r~~~~dGl~~ilag 240 (434)
. + .+++ | +...|.++ ...+...+.++++++.|+++-.++.++..+ ..-+-|||++|-|++|++++
T Consensus 310 -~-i--~~g~--~---~~~lp~~~~~~~~~~~~~~i~iva~~~~iai~k~fa~~~~----y~vd~nqELiAlG~~Ni~sS 376 (665)
T KOG0236|consen 310 -E-I--PRGF--P---PPSLPPLSLTPQVIPDAFAIAIVALLEHIAIGKSFASLHG----YKVDSNQELIALGISNILSS 376 (665)
T ss_pred -c-C--CCCC--C---CCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CeeCCChHHHHHHHHHHhhh
Confidence 0 1 1111 1 12233332 345667889999999999988888877654 33466999999999999999
Q ss_pred cccccccceeeeecceeeeeeeeCceeEEEechhHHHHHHhhhcccceecccchHHHHHHHHH-HHH-HhhccCcchhhh
Q 013911 241 LFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCL-FFA-YVGAGGLSFLQF 318 (434)
Q Consensus 241 lfG~~~~tt~~~~n~g~i~~Tgv~SR~~~~~a~~~lill~l~pk~~al~a~IP~pV~gg~liv-~fg-~i~~~Gi~~l~~ 318 (434)
+|+++|.+... .+..+...+|++++...++.+++.++.-++ +++++..+|.++++++.+. +.+ ++....+..+++
T Consensus 377 ff~~~p~tgs~-sRSav~~~sG~~T~~s~i~~~~~vl~~l~~--l~p~f~~iP~~vLaaIIi~a~~~~l~~~~~~~~lwr 453 (665)
T KOG0236|consen 377 FFGCYPTTGSF-SRSAVNIKSGGRTQVAGIVSAALVLLALLF--LGPLFYYIPKCVLAAIIISALIGMLIQLEDLKPLWR 453 (665)
T ss_pred hhceEcccchh-hHHHHHhhcCCcchHHHHHHHHHHHHHHHH--HHHHhhhhhHHHHHHHHHHHhhHHHhhhhhhhhhee
Confidence 99999999999 999999999999999877777665444333 5679999999999999886 455 556655655554
Q ss_pred cc
Q 013911 319 CN 320 (434)
Q Consensus 319 ~~ 320 (434)
.+
T Consensus 454 ~~ 455 (665)
T KOG0236|consen 454 LS 455 (665)
T ss_pred CC
Confidence 33
No 16
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=99.35 E-value=3e-13 Score=136.26 Aligned_cols=238 Identities=20% Similarity=0.274 Sum_probs=162.5
Q ss_pred HHHHhhhhHHHHHhHHHHHHhhhhhhHHHHHhcCCCccchhhhhhhchhhhccCCCcccceeechhHHHHHHHHHhhchh
Q 013911 34 RTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVAKCVEIGLPQLVIIVFISQYLPH 113 (434)
Q Consensus 34 ~~~~~~~ga~~vaGli~~llg~~gl~~~l~~~fppvV~G~~i~lIGl~l~~~g~~~~~~~~~i~~~~l~~ii~l~~~~k~ 113 (434)
++++++.|+.+++|++.+++|++|+++|+.|.+|+.+...++..+-+......++.+.+++.+....++.-++. |+
T Consensus 85 ~~~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AMLAGvLl~f~l~~f~a~~~~P~l~~~ml~~~l~~----~r 160 (378)
T PF03594_consen 85 YSFAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAMLAGVLLPFGLAAFTALQADPLLVGPMLAVFLLA----RR 160 (378)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----HH
Confidence 47999999999999999999999999999999997666555444433332223333444555555544444333 22
Q ss_pred hhhcCcccccchhhhHHHHHHHHHHHHHhhccccCCCCCCccceeccccCCCccCCCceecccCCCCCCCccChhhHHHH
Q 013911 114 VIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAM 193 (434)
Q Consensus 114 ~~~~~~~~l~~~aiLigivvG~~~a~~~g~~~~~~~~~~~~~~~~~vd~~~~v~~~p~f~~P~~~~~g~P~f~~~~i~~~ 193 (434)
+.++++++..+++|.++++..|.. +... + + ..+|.| .|-.|+||++.++.+
T Consensus 161 -------~~pr~av~~al~~g~~~a~~~g~~----------------~~~~-~---~-~~~~~p-~~~~P~Fs~~a~v~l 211 (378)
T PF03594_consen 161 -------FSPRYAVLAALVAGVAVAALTGQL----------------HPSA-L---Q-LSLAHP-VFTTPEFSWSALVSL 211 (378)
T ss_pred -------HcchhHHHHHHHHHHHHHHhcCCC----------------Cccc-c---c-ccccee-EEECCcccHHHHHHH
Confidence 245679999999999998877542 1111 1 1 123322 456799999988765
Q ss_pred -HHHHHHHHHhhcchhhhhhhhcCCCCCCcccccccccchhhhhhhhccccccccceeeeecceeeeee---eeCc-eeE
Q 013911 194 -MMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALT---RVGS-RRV 268 (434)
Q Consensus 194 -~~i~lv~~~esig~~~a~~~~~~~~~~~~~~i~r~~~~dGl~~ilaglfG~~~~tt~~~~n~g~i~~T---gv~S-R~~ 268 (434)
++.+++.+......-.++-|..+ .+.+.|+-+...|+++++.+.||+.+.+-.. -.+++-... +..+ ||.
T Consensus 212 alPL~ivtmasQnlpG~aVL~a~G----Y~~p~~~~~~~tGl~s~l~ApfGg~~~nlAa-itaAIc~g~eah~dp~rRy~ 286 (378)
T PF03594_consen 212 ALPLFIVTMASQNLPGIAVLRAAG----YQPPVNPLITVTGLASLLAAPFGGHAVNLAA-ITAAICAGPEAHPDPSRRYI 286 (378)
T ss_pred HHHHHHHHHHhcchHHHHHHHHcC----CCCCchHHHHHHHHHHHHHhhhchhhhHHHH-HHHHHHcCCccCCCcccchH
Confidence 68888888877766666766655 3457799999999999999999999744333 222222211 1233 444
Q ss_pred -EEechhHHHHHHhh-hcccceecccchHHHHHHHH-HHHHHhh
Q 013911 269 -VQISAGFMIFFSVL-GKFGAVFASIPAPIVAALYC-LFFAYVG 309 (434)
Q Consensus 269 -~~~a~~~lill~l~-pk~~al~a~IP~pV~gg~li-v~fg~i~ 309 (434)
.+.+|++.+++|++ +.+..++...|.+.+..+-= .+++.+.
T Consensus 287 Aav~~Gv~yll~Gl~a~~~v~l~~~lP~~li~~lAGLALlg~l~ 330 (378)
T PF03594_consen 287 AAVAAGVFYLLFGLFAAALVALFAALPPALIAALAGLALLGTLG 330 (378)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 48888999999998 67889999999988766532 3455544
No 17
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.16 E-value=6.5e-11 Score=117.39 Aligned_cols=256 Identities=20% Similarity=0.237 Sum_probs=172.2
Q ss_pred cccccccceEeeeeeeEEEecccCCChhHHHHHHHHhhhhHHHHHhHHHHHHhhhhhhHHHHHhcCCCccchhhhhhhch
Q 013911 2 YCAFKHHTTVINISLFWVVTLLSRFDAIQKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFG 81 (434)
Q Consensus 2 ~~~~~rlP~v~G~Sfa~i~~~~~~~~~~~~~~~~~~~~~ga~~vaGli~~llg~~gl~~~l~~~fppvV~G~~i~lIGl~ 81 (434)
||...|.|++..=|--=..-+.+... ..++.++.|+.+++|.+.++.|.+|.++|+++-+||.+-..++..|=+.
T Consensus 73 Ls~~yR~Pv~~aWSTPG~all~asl~-----g~s~~eaVGAfiVt~~li~l~G~~~~l~rl~~~IP~sla~AmlAGILL~ 147 (402)
T COG3135 73 LSLRYRVPVLTAWSTPGAALLVASLG-----GLSFAEAVGAFIVTGALIILCGLTGPLTRLMRIIPPSLAAAMLAGILLR 147 (402)
T ss_pred HHhhhccceeeeecCccHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 56678999987655321111112211 1478999999999999999999999999999999986655444433333
Q ss_pred hhhccCCCcccceeechhHHHHHHHHHhhchhhhhcCcccccchhhhHHHHHHHHHHHHHhhccccCCCCCCccceeccc
Q 013911 82 LYEFGFPGVAKCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTD 161 (434)
Q Consensus 82 l~~~g~~~~~~~~~i~~~~l~~ii~l~~~~k~~~~~~~~~l~~~aiLigivvG~~~a~~~g~~~~~~~~~~~~~~~~~vd 161 (434)
....+++.+.+++.+.+..++.-++..++. .++++...+++|..++.+.|..+
T Consensus 148 F~l~a~~a~~~~p~l~lpmv~~~ll~r~f~-----------pr~aV~aalvvgv~va~~~G~~~---------------- 200 (402)
T COG3135 148 FGLKAFKALPTQPLLVLPMVLAYLLARVFA-----------PRYAVIAALVVGVLVAALLGDLH---------------- 200 (402)
T ss_pred HHHHHHhccCCChHHHHHHHHHHHHHHHcC-----------chHHHHHHHHHHHHHHHHhCccc----------------
Confidence 333344445566666555555444443322 47899999999999999887431
Q ss_pred cCCCccCCCceecccCCCCCCCccChhhHHHH-HHHHHHHHHhhcchhhhhhhhcCCCCCCcccccccccchhhhhhhhc
Q 013911 162 RAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAM-MMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSG 240 (434)
Q Consensus 162 ~~~~v~~~p~f~~P~~~~~g~P~f~~~~i~~~-~~i~lv~~~esig~~~a~~~~~~~~~~~~~~i~r~~~~dGl~~ilag 240 (434)
.. ...+..+.| .|-.|+|++.+++.+ ++.+++.|...-..-.|+-|..+- +++.+--+.+.|+.+++++
T Consensus 201 ~~---~~~~~~~~p---~~v~P~Fs~~A~l~lalPL~lvtmasQN~pGiAvLka~gY----~pp~~pl~~~TGl~sll~A 270 (402)
T COG3135 201 TA---LVALEISTP---TWVTPEFSFAAMLSLALPLFLVTMASQNLPGIAVLKAAGY----QPPPSPLIVATGLASLLSA 270 (402)
T ss_pred cc---ccccccCcc---eeeCCcccHHHHHHHhHHHHHHHHHhccCccceeehhcCC----CCCCchHHHHhHHHHHHhc
Confidence 00 112223344 567799999988875 689999998877777777776653 3355778899999999999
Q ss_pred cccccccceeeeecceeeeee----eeCceeE-EEechhHHHHHHhh-hcccceecccchHHHHHH
Q 013911 241 LFGTVNGTSVSVENAGLLALT----RVGSRRV-VQISAGFMIFFSVL-GKFGAVFASIPAPIVAAL 300 (434)
Q Consensus 241 lfG~~~~tt~~~~n~g~i~~T----gv~SR~~-~~~a~~~lill~l~-pk~~al~a~IP~pV~gg~ 300 (434)
.||+...+-.- -++.+...- .-..||. ..++|++-++.|+| +.+.+++...|.+.+..+
T Consensus 271 pfG~~t~nLaA-ItAAic~gpdaHpD~~rry~Aa~~agi~ylv~GlF~~~~~~l~~alP~~li~~l 335 (402)
T COG3135 271 PFGGHTVNLAA-ITAAICTGPDAHPDPARRYTAALVAGIFYLLAGLFGGALVGLMAALPASLIAAL 335 (402)
T ss_pred ccccceecHHH-HHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHH
Confidence 99998533222 222222111 1123443 57888888999988 688899999999877544
No 18
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=96.82 E-value=0.0049 Score=69.59 Aligned_cols=181 Identities=14% Similarity=0.202 Sum_probs=101.8
Q ss_pred cccccchhhhHHHHHHHHHHHHHhhccccCCCCCCccceecccc----CCCc-cCCCceecccCCCCCC----CccC-hh
Q 013911 119 KNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDR----AGLI-DAAPWIRVPWPFQWGA----PSFD-AG 188 (434)
Q Consensus 119 ~~~l~~~aiLigivvG~~~a~~~g~~~~~~~~~~~~~~~~~vd~----~~~v-~~~p~f~~P~~~~~g~----P~f~-~~ 188 (434)
++.+.-+++.+++++-+.+.+.++.. +.+ +.+. ...- ..-.|+--| |+. |.+. +.
T Consensus 592 R~~isDfgv~iaI~~~t~v~~~~~~v--~~~---------kl~Vp~~f~pt~p~~R~W~i~p----~~~~~~~p~w~~~~ 656 (900)
T TIGR00834 592 RRLIGDFGVPISILIMVLVDIFIGDT--YTQ---------KLSVPSGLKVTNPSARGWFIPP----LGENRPFPWWMMFA 656 (900)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHhccC--ccc---------ccCCCCCcCCCCCCCCCeEEcc----ccccccccHHHHHH
Confidence 44556689999999988888876521 100 1111 1100 113565222 322 2221 34
Q ss_pred hHHHHHHHHHHHHHhhcchhhhhhhhcCCCCCCcccccccccchhhhhhhhccccccccceeeeecce------ee----
Q 013911 189 EAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAG------LL---- 258 (434)
Q Consensus 189 ~i~~~~~i~lv~~~esig~~~a~~~~~~~~~~~~~~i~r~~~~dGl~~ilaglfG~~~~tt~~~~n~g------~i---- 258 (434)
++++.+.+++.-++|+-=+..-+++-. .+-.+....+=.++.-|+.+.++|++|-.+.++..-++.- ..
T Consensus 657 A~iPAlll~ILiFmD~nIts~iv~~~e-~kLkKgsgyH~Dllllg~~~~v~sllGLPw~~aatv~S~~Hv~sL~v~~~~~ 735 (900)
T TIGR00834 657 AALPALLVFILIFMEQQITTLIVSKKE-RKLKKGSGFHLDLLLVVGMGGVAALFGLPWLSAATVRSVTHANALTVMSKAS 735 (900)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhcCcc-ccCCCCcccchHHHHHHHHHHHHHhcCCCcccccCCcChhhHhHHeeeeecc
Confidence 556667788888888765444443321 1223445567778889999999999998766555211111 10
Q ss_pred ------eeeeeCceeE-EEechhHHHHHHhhhcccceecccchHHHHHHHHHHHHHhhccCcchhhhc
Q 013911 259 ------ALTRVGSRRV-VQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFC 319 (434)
Q Consensus 259 ------~~Tgv~SR~~-~~~a~~~lill~l~pk~~al~a~IP~pV~gg~liv~fg~i~~~Gi~~l~~~ 319 (434)
...+|+.-|+ ..+.++ |+ |+.-.+.+++..||.||+.|+.++| |.-...|.+...++
T Consensus 736 ~~Ge~~~i~~V~EQRvT~ll~~l-Li--glsv~~~PvL~~IP~aVL~GvFlYM-Gv~SL~GnQ~~~Ri 799 (900)
T TIGR00834 736 APGEKAQIQEVREQRVTGLLVAV-LV--GLSILMEPILKRIPLAVLFGIFLYM-GVTSLSGIQLFDRL 799 (900)
T ss_pred CCCCCCccceeEeeehHHHHHHH-HH--HHHHHHHHHHhhccHHHHHHHHHHH-HHhhcccCHHHHHH
Confidence 0123333232 233333 22 2222245589999999999999984 66777777766544
No 19
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=95.26 E-value=0.029 Score=62.46 Aligned_cols=256 Identities=12% Similarity=0.134 Sum_probs=134.4
Q ss_pred HHHHhHHHHHHhhhhhhHHHHHhcCCCccchhhhhhhchhhhccCC--------------------------C---cc--
Q 013911 43 LIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFP--------------------------G---VA-- 91 (434)
Q Consensus 43 ~~vaGli~~llg~~gl~~~l~~~fppvV~G~~i~lIGl~l~~~g~~--------------------------~---~~-- 91 (434)
.+.+.++.++++++.. ..+.++|+...-=.+-++|.+..+..+++ . ..
T Consensus 451 glW~~~l~illaa~~a-s~lv~~~TRfteEiF~~LIs~iFi~eai~kl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (876)
T KOG1172|consen 451 GLWTAFLLILLAATNA-SSLVKYITRFTEEIFGLLISLIFIYEAIKKLIKIFKGLPIEFDSKPNPGADWSGPECESVSGT 529 (876)
T ss_pred HHHHHHHHHHHHHhhh-hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccCCcccccccccccccCcc
Confidence 3566777788888876 88888888643322333333322222111 0 00
Q ss_pred --c---ceeechh---HHHHHHHHHhhchhhhh------cCcccccchhhhHHHHHHHHHHHHHhhccccCCCCCCccce
Q 013911 92 --K---CVEIGLP---QLVIIVFISQYLPHVIK------RGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQAS 157 (434)
Q Consensus 92 --~---~~~i~~~---~l~~ii~l~~~~k~~~~------~~~~~l~~~aiLigivvG~~~a~~~g~~~~~~~~~~~~~~~ 157 (434)
+ ....++. ..+.++.+..++|++-. +.+.++.-+++.+++++-..+.+..+.. .++
T Consensus 530 ~~~~~~~p~~~llslil~~gt~~~a~~lr~fr~s~yf~~~~R~~isDfgvpisIl~~s~i~~~~~~~--~~~-------- 599 (876)
T KOG1172|consen 530 LLGSSCRPDTALLSLILMFGTLFLALTLRKFKSSRYFPRKVRSLISDFGVPLSILVFSLIDYFGGSV--ETP-------- 599 (876)
T ss_pred cCCCcCCcchHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHhhhhHHHHHHHHHHHhhcccc--CCC--------
Confidence 0 0222333 33334455556665421 2234555688999999988887776521 111
Q ss_pred ecccc----CCCccC-CCceecccCCCCCCCccC-hhhHHHHHHHHHHHHHhhcchhhhhhhhcCCCCCCcccccccccc
Q 013911 158 CRTDR----AGLIDA-APWIRVPWPFQWGAPSFD-AGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGW 231 (434)
Q Consensus 158 ~~vd~----~~~v~~-~p~f~~P~~~~~g~P~f~-~~~i~~~~~i~lv~~~esig~~~a~~~~~~~~~~~~~~i~r~~~~ 231 (434)
.++. ...-.. -.|+-.|.- ..|-+. ..++++.+.+++.-++|+-=+..-+++. +.+-.+....+=.++-
T Consensus 600 -kl~vp~~~~~t~~~~rgw~v~~~~---~~P~~~~~~A~ipalll~iLiFmDqqIts~iv~rk-e~kLKKgsgyH~DLll 674 (876)
T KOG1172|consen 600 -KLPVPSVFPPTWPFDRGWFVPPFG---KNPWWYVFAALIPALLLTILIFMDQQITAVIVNRK-ENKLKKGSGYHLDLLL 674 (876)
T ss_pred -ccccCcCCCCCCcccCCeeeCCCC---CCCHHHHHHHHHHHHHHHHHHHhcchHHHHHhhcc-cccCCCCcchhHHHHH
Confidence 1111 100011 245543310 011111 2344555677777788875433333332 1222344566667899
Q ss_pred hhhhhhhhccccccccceeeeecceeeee----------------eeeCceeE-EEechhHHHHHHhhhcccceecccch
Q 013911 232 QGVGILLSGLFGTVNGTSVSVENAGLLAL----------------TRVGSRRV-VQISAGFMIFFSVLGKFGAVFASIPA 294 (434)
Q Consensus 232 dGl~~ilaglfG~~~~tt~~~~n~g~i~~----------------Tgv~SR~~-~~~a~~~lill~l~pk~~al~a~IP~ 294 (434)
-|+.+.++|++|=.+.++..-++.-.+.. -+|+.-++ ..+.+++ +|+.-...+++..||.
T Consensus 675 lgil~~icsllGLPw~~~a~p~S~~H~~SL~v~~~~~apge~~~i~~V~EQRvtgll~~ll---vgls~~~~pvL~~IP~ 751 (876)
T KOG1172|consen 675 LGILTLICSLLGLPWSNAATVQSPMHTKSLAVESETSAPGEQPQIVGVREQRVTGLLQFLL---VGLSVLLLPVLKLIPM 751 (876)
T ss_pred HHHHHHHHHhcCCCccccccccCHHHHHHHHHhhcccCCCCccccccchhhhhHHHHHHHH---HHHHHHHHHHHhhccH
Confidence 99999999999988776665344322211 12333222 2333333 2322235568999999
Q ss_pred HHHHHHHHHHHHHhhccCcchhhh
Q 013911 295 PIVAALYCLFFAYVGAGGLSFLQF 318 (434)
Q Consensus 295 pV~gg~liv~fg~i~~~Gi~~l~~ 318 (434)
||+.|+.++| |.=...|.|...+
T Consensus 752 ~VL~GvFlYM-gv~SL~Gnqf~eR 774 (876)
T KOG1172|consen 752 PVLYGVFLYM-GVSSLPGNQFFER 774 (876)
T ss_pred HHHHHHHHHH-hhccCCccHHHHH
Confidence 9999999984 4455566665543
No 20
>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 489 to 517 amino acids in length.
Probab=95.04 E-value=0.17 Score=51.68 Aligned_cols=250 Identities=13% Similarity=0.104 Sum_probs=133.9
Q ss_pred HHHhHHHHHHhhhhhhHHHHHhcCCCccchhhhhhhchhhhccCCC---cc---cceeechhHHHHHHHHHhhchhhhhc
Q 013911 44 IVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPG---VA---KCVEIGLPQLVIIVFISQYLPHVIKR 117 (434)
Q Consensus 44 ~vaGli~~llg~~gl~~~l~~~fppvV~G~~i~lIGl~l~~~g~~~---~~---~~~~i~~~~l~~ii~l~~~~k~~~~~ 117 (434)
++.|++-++++.++--.|+.++=...|.|..+..+|..=...+++. +. +...++++.+.+.+++-.|+.++
T Consensus 149 ilvg~fGlil~~~kggS~L~~LTs~gv~ggLllylG~~G~~~qi~kl~~wa~~~~~~~i~fvvi~~tiv~Ya~L~k~--- 225 (492)
T PF11840_consen 149 ILVGVFGLILSIFKGGSKLVNLTSHGVCGGLLLYLGFVGLIGQIKKLFAWANGFDMGYIAFVVIIVTIVLYAYLAKI--- 225 (492)
T ss_pred HHHHHHHHHHHHhcchhHHHhhhcCccccceeeeehhhhHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHh---
Confidence 4568888889988887899999999888877666665322222221 11 12346666666666665555443
Q ss_pred CcccccchhhhHHHHHHHHHHHHHhhccccCCCCCCccceeccccCC---CccCCCceecc--cCCCCCCCccChhhHHH
Q 013911 118 GKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAG---LIDAAPWIRVP--WPFQWGAPSFDAGEAFA 192 (434)
Q Consensus 118 ~~~~l~~~aiLigivvG~~~a~~~g~~~~~~~~~~~~~~~~~vd~~~---~v~~~p~f~~P--~~~~~g~P~f~~~~i~~ 192 (434)
.||+ .++=++-+++-++++.+|.. .||.. ...-.|...+- +-++.|+|.+ +-++.
T Consensus 226 ~KrW---LaIPl~~~~a~~~a~~lGa~---------------f~f~t~pglp~lnP~YWWge~tGw~LglP~~--~hfia 285 (492)
T PF11840_consen 226 EKRW---LAIPLCSILAGVLAFALGAP---------------FEFTTEPGLPNLNPMYWWGEETGWQLGLPTL--EHFIA 285 (492)
T ss_pred ccch---hhhhHHHHHHHHHHHHcCCC---------------ceeecCCCCCCCCCcccccCCcccccCCCcH--HHHHH
Confidence 3333 45555555555667777652 12210 00011111111 1234566643 33444
Q ss_pred HHHHHHHHH----HhhcchhhhhhhhcCCC--CCCcccccccccchhhhhhhhccccccccceeeeecceeee-eeeeCc
Q 013911 193 MMMASFVAL----VESTGAFFAVARYASAT--PMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLA-LTRVGS 265 (434)
Q Consensus 193 ~~~i~lv~~----~esig~~~a~~~~~~~~--~~~~~~i~r~~~~dGl~~ilaglfG~~~~tt~~~~n~g~i~-~Tgv~S 265 (434)
.+++++... -|.+|+ +..++..-.+ ++..-+++..+....+=+++++++|+-..+++- ..--+-+ ..+.-=
T Consensus 286 v~PFAiLAVaMWSpDflgh-rvFqelnypk~~~kvlMnvDDTm~~~siRQ~vGs~lGGgN~~SsW-gTymIPaaIaKRPI 363 (492)
T PF11840_consen 286 VLPFAILAVAMWSPDFLGH-RVFQELNYPKETKKVLMNVDDTMTMCSIRQIVGSILGGGNIASSW-GTYMIPAAIAKRPI 363 (492)
T ss_pred hccHHHHHHHHhCchHHHH-HHHHHhcCchhhcceeecccchhHHHHHHHHHhhcccCCcccccc-hhhhhhHHHhcCCC
Confidence 444444443 344442 2233333111 112246888999999999999999998655544 2211111 112222
Q ss_pred eeEEEechhHHHHHHhhhcccceecccchHHHHHHHHH-HHHHhhccCcchhhhcc
Q 013911 266 RRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCL-FFAYVGAGGLSFLQFCN 320 (434)
Q Consensus 266 R~~~~~a~~~lill~l~pk~~al~a~IP~pV~gg~liv-~fg~i~~~Gi~~l~~~~ 320 (434)
|--.+..++++++.++..-= .=..+=.||+--++++ +|--+.-.|++..++-+
T Consensus 364 pggAiLtg~~Ci~~av~GyP--Mdlavw~Pvl~vALlvGVflPLleAGmqm~r~~k 417 (492)
T PF11840_consen 364 PGGAILTGLLCIVAAVWGYP--MDLAVWPPVLRVALLVGVFLPLLEAGMQMTRKGK 417 (492)
T ss_pred CchHHHHHHHHHHHHHhcCc--chhhhcccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 22236667777777776411 1112224677666666 66667778888776433
No 21
>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=90.46 E-value=0.084 Score=56.56 Aligned_cols=182 Identities=13% Similarity=0.169 Sum_probs=1.3
Q ss_pred cccccchhhhHHHHHHHHHHHHHhhccccCCCCCCccceecc--ccCCCccC-CCceecccCCCCCCCccC-hhhHHHHH
Q 013911 119 KNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRT--DRAGLIDA-APWIRVPWPFQWGAPSFD-AGEAFAMM 194 (434)
Q Consensus 119 ~~~l~~~aiLigivvG~~~a~~~g~~~~~~~~~~~~~~~~~v--d~~~~v~~-~p~f~~P~~~~~g~P~f~-~~~i~~~~ 194 (434)
++++.-+++.+++++-+.+...++.. . +. ..+ ++...-.+ -+|+--|. ...|.+. ..++++.+
T Consensus 277 R~~isDf~v~iaI~~~~~~~~~~~~~-~-~k--------L~vp~~f~pt~~~~r~W~v~p~---~~~p~w~~~aA~~pal 343 (510)
T PF00955_consen 277 REIISDFGVPIAILIMTLVDYLFGVD-T-PK--------LNVPSSFKPTSPGKRGWFVNPF---GSLPWWAIFAAIIPAL 343 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhHHhhHHHHHHHHHHHHHHHhccc-c-cc--------cCCCCCCCCCCCCCCCeecCcc---cCCCHHHHHHHHHHHH
Confidence 45666688999999888877665521 0 00 000 11111111 34553331 1123222 23445556
Q ss_pred HHHHHHHHhhcchhhhhhhhcCCCCCCcccccccccchhhhhhhhccccccccceeeeecceeee---------------
Q 013911 195 MASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLA--------------- 259 (434)
Q Consensus 195 ~i~lv~~~esig~~~a~~~~~~~~~~~~~~i~r~~~~dGl~~ilaglfG~~~~tt~~~~n~g~i~--------------- 259 (434)
.+++.-++|+-=+..-+++. +.+-.+....+=.+..-|+-+.++|++|-...++..-++.-.+.
T Consensus 344 ll~iL~F~DqnIts~ivn~~-e~kLkKg~gyH~DL~llgi~~~v~sllGLPw~~aa~~~S~~Hv~sL~~~~~~~~pGe~~ 422 (510)
T PF00955_consen 344 LLTILFFMDQNITSLIVNRP-ENKLKKGSGYHLDLFLLGIITLVCSLLGLPWMNAATPQSPMHVRSLAVESETSAPGEKP 422 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhHhHHHhCCh-hhccCCCCcccHHHHHHHHHHHHHHHcCCCCcccCccCCHHHhCcccEEeccccCCCCC
Confidence 67777777754332222221 11223445666778999999999999997766664313322111
Q ss_pred -eeeeCc-eeEEEechhHHHHHHhhhcccceecccchHHHHHHHHHHHHHhhccCcchhhh
Q 013911 260 -LTRVGS-RRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQF 318 (434)
Q Consensus 260 -~Tgv~S-R~~~~~a~~~lill~l~pk~~al~a~IP~pV~gg~liv~fg~i~~~Gi~~l~~ 318 (434)
..+++. |......++ + +|+...+.+++..||.||+.|+.+++ |.-...|.|..++
T Consensus 423 ~i~~V~EqRvT~l~~~~-L--igls~~l~pvL~~IP~~VL~GvFlym-G~~sL~gnq~~~R 479 (510)
T PF00955_consen 423 KIVGVREQRVTGLLVHL-L--IGLSLFLLPVLKLIPMPVLYGVFLYM-GVTSLSGNQFFER 479 (510)
T ss_dssp ----------------------------------------------------------TTT
T ss_pred eeCeEEEecccHHHHHH-H--HHHHHHHHHHHHHhhHHHHHHHHHhh-eeeeecCccHHHH
Confidence 122333 333444443 2 23444467789999999999999983 4444455555443
No 22
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=66.12 E-value=3.7 Score=44.75 Aligned_cols=121 Identities=18% Similarity=0.216 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHHHHhhcchhhhhhhhcCCCCCCcccccccccchhhhhhhhccccccccceeeeecceeeee--eeeC--
Q 013911 189 EAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLAL--TRVG-- 264 (434)
Q Consensus 189 ~i~~~~~i~lv~~~esig~~~a~~~~~~~~~~~~~~i~r~~~~dGl~~ilaglfG~~~~tt~~~~n~g~i~~--Tgv~-- 264 (434)
-++.-+.++++.+=|+++ .+..++-++ ..|+.+.=++.++.++||+.+...+. ...+.... +-+.
T Consensus 24 Dl~AGltva~valP~ama----~a~~aGv~p------~~GLyas~i~~~v~alfGgs~~~i~G-Pt~a~~~v~a~~i~~~ 92 (554)
T COG0659 24 DLLAGLTVAAVALPLAMA----FAIAAGVPP------EAGLYASIVAGIIYALFGGSRGLISG-PTGAFAVVLAAVIASL 92 (554)
T ss_pred HHHHHHHHHHHHhHHHHH----HHHHcCCCH------HHHHHHHHHHHHHHHHHcCCccceec-cchhhHHHHHHHHHHH
Confidence 445667788888888886 444545322 57889999999999999999876443 33222111 1112
Q ss_pred -c------eeEEEechhHHHHHHhhhcccceecccchHHHHHHHHHHHHHhhccCcchhhhccc
Q 013911 265 -S------RRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNL 321 (434)
Q Consensus 265 -S------R~~~~~a~~~lill~l~pk~~al~a~IP~pV~gg~liv~fg~i~~~Gi~~l~~~~~ 321 (434)
. -...+.+|++.+++|++ +++.++..||.||+-|.+--.--.|....+..+...+.
T Consensus 93 ~~~g~~~~~~~tllaGv~~i~~G~l-RLG~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~~ 155 (554)
T COG0659 93 VETGLALAFLATLLAGVFQILLGLL-RLGRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLAS 155 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 1 11236788888999987 89999999999999988776555566655665554444
No 23
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=52.94 E-value=8.7 Score=41.87 Aligned_cols=115 Identities=16% Similarity=0.198 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHhhcchhhhhhhhcCCCCCCcccccccccchhhhhhhhccccccccceeeeecceeeeee-------e
Q 013911 190 AFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALT-------R 262 (434)
Q Consensus 190 i~~~~~i~lv~~~esig~~~a~~~~~~~~~~~~~~i~r~~~~dGl~~ilaglfG~~~~tt~~~~n~g~i~~T-------g 262 (434)
++.-+.++++.+-|+++ .+..++-++ .-|+.+--+..++.++||+.+..... ..+....++ +
T Consensus 18 i~aGltv~~~~iP~~~a----yA~laglpp------~~GLysa~~~~iv~alfGss~~~i~G-p~a~~sl~~~~~v~~~~ 86 (563)
T TIGR00815 18 LMAGLTVGILLIPQAMA----YAILAGLSP------IYGLYTSFVPPFIYALFGTSRDIAIG-PVAVMSLLLGSVIARVG 86 (563)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHcCCCc------hhhhHHHHHHHHHhheecCCCcccCC-HHHHHHHHHHHHHHHhc
Confidence 45567788888888886 444555332 45789999999999999999876665 332211111 1
Q ss_pred eCce----------eEEEechhHHHHHHhhhcccceecccchHHHHHHHHHHHHHhhccCcchh
Q 013911 263 VGSR----------RVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFL 316 (434)
Q Consensus 263 v~SR----------~~~~~a~~~lill~l~pk~~al~a~IP~pV~gg~liv~fg~i~~~Gi~~l 316 (434)
.... .....+|++++++|++ +++.+...+|.||+.|.+.-+.-.+..+-++.+
T Consensus 87 ~~~~~~~~~~~~a~~l~~l~Gi~~~~~g~l-rlG~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~ 149 (563)
T TIGR00815 87 LQYLFDCDAIRLAFTLTLLAGIFQVILGLL-RLGFLIEFLSHAVISGFMTGAAITIGLSQLKGL 149 (563)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 3346788889999987 799999999999999887765555554333333
No 24
>PRK11660 putative transporter; Provisional
Probab=37.45 E-value=16 Score=39.96 Aligned_cols=113 Identities=12% Similarity=0.158 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHHHhhcchhhhhhhhcCCCCCCcccccccccchhhhhhhhccccccccceeeeecceeeeee-------
Q 013911 189 EAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALT------- 261 (434)
Q Consensus 189 ~i~~~~~i~lv~~~esig~~~a~~~~~~~~~~~~~~i~r~~~~dGl~~ilaglfG~~~~tt~~~~n~g~i~~T------- 261 (434)
-++.-++++++.+-|+++ .+..++.++ .-|+.+.-+..++.++||+.+..... .........
T Consensus 32 D~iAGltv~~~~iPq~ma----yA~lag~pp------~~GLysa~~~~~vyal~Gss~~~~~G-p~a~~~~~~~~~~~~~ 100 (568)
T PRK11660 32 DLIAGITVGIIAIPLAMA----LAIASGVPP------QYGLYTAAVAGIVIALTGGSRFSVSG-PTAAFVVILYPVSQQF 100 (568)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHcCCCh------HHHHHHHHHHHHHHHHhcCCCCcccC-hhHHHHHHHHHHHHHh
Confidence 345667888889989886 445555432 23799999999999999999877665 332211111
Q ss_pred eeC-ceeEEEechhHHHHHHhhhcccceecccchHHHHHHHHHHHHHhhccCc
Q 013911 262 RVG-SRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGL 313 (434)
Q Consensus 262 gv~-SR~~~~~a~~~lill~l~pk~~al~a~IP~pV~gg~liv~fg~i~~~Gi 313 (434)
+.. .-.....+|++.+++|++ +++.+...||.||+.|.+.-+--.+..+.+
T Consensus 101 ~~~~~~~~~~l~Gii~~l~gll-rlG~l~~fip~pVi~Gf~~g~al~I~~~Ql 152 (568)
T PRK11660 101 GLAGLLVATLMSGIILILMGLA-RLGRLIEYIPLSVTLGFTSGIGIVIATLQI 152 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-hhhHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 110 001246788888899987 599999999999998877653333444333
No 25
>KOG4085 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.87 E-value=10 Score=33.75 Aligned_cols=103 Identities=14% Similarity=0.038 Sum_probs=59.1
Q ss_pred eCceeEEEechhHHHHHHhhhcccceecccchHHHHHHHHHHHHHhhccC--------cchhhhc-cccccchhhhhhhh
Q 013911 263 VGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGG--------LSFLQFC-NLNSFRVKFILGFS 333 (434)
Q Consensus 263 v~SR~~~~~a~~~lill~l~pk~~al~a~IP~pV~gg~liv~fg~i~~~G--------i~~l~~~-~~~~~rn~~ivg~s 333 (434)
-.+|.+.+.++++.++.|.+. .++.=|....++++.++-|++...= +....++ +.-| |..+--=..
T Consensus 30 ~l~rl~gilgaf~~~~fGvf~----~ITls~~c~vAgvlqm~agfivlllEAPfCCqFv~F~n~iAekve-s~~lw~kA~ 104 (175)
T KOG4085|consen 30 WLCRLSGILGAFSCAIFGVFN----CITLSPLCIVAGVLQMMAGFIVLLLEAPFCCQFVEFANTIAEKVE-SLRLWQKAV 104 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHhh----HHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 346777788888888888765 7888888888888887766554310 0000111 1111 222223334
Q ss_pred hhhccChhhhHHHhhhhcCcCcccccccccccccccccCChhhHHHHHHHHhhcc
Q 013911 334 IFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDNT 388 (434)
Q Consensus 334 l~~Gl~~p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~~gi~~g~l~ai~Ln~~ 388 (434)
+..+++++..+-. -.+.++++||++.++=+-.=+..+
T Consensus 105 ~Y~aMavvPI~lc------------------~~L~tllGsg~iFatGV~YG~mAL 141 (175)
T KOG4085|consen 105 FYCAMAVVPIVLC------------------LTLTTLLGSGIIFATGVLYGLMAL 141 (175)
T ss_pred HHHhhccccchhh------------------hhHHHHhCcchhhhhHHHHHHHHh
Confidence 5566666433322 236788999998776544434333
No 26
>COG4744 Uncharacterized conserved protein [Function unknown]
Probab=20.85 E-value=81 Score=27.00 Aligned_cols=28 Identities=21% Similarity=0.150 Sum_probs=19.2
Q ss_pred hhHHHHHHHHhh-----ccccccCCcccccccc
Q 013911 375 PFVAGCVAFFLD-----NTLHKKDGQVRKDRGR 402 (434)
Q Consensus 375 i~~g~l~ai~Ln-----~~~~~~~~~~~~~~~~ 402 (434)
+.++.|++++++ +++++++..++|+.+.
T Consensus 35 fsva~LI~lv~Sy~lp~~lss~~~~~~v~np~e 67 (121)
T COG4744 35 FSVALLIALVMSYHLPELLSSNEDITIVKNPGE 67 (121)
T ss_pred HHHHHHHHHHHhcCCccccCCCCCceEEecCcc
Confidence 456778888887 4456666667777774
No 27
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=20.13 E-value=17 Score=37.66 Aligned_cols=115 Identities=19% Similarity=0.260 Sum_probs=65.8
Q ss_pred ccChhhHHHHHHHHHHHHHhhcchhhhhhhhcCCCCCCccccccc----ccchhhhhhhhccccccccceeeeecceeee
Q 013911 184 SFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRG----VGWQGVGILLSGLFGTVNGTSVSVENAGLLA 259 (434)
Q Consensus 184 ~f~~~~i~~~~~i~lv~~~esig~~~a~~~~~~~~~~~~~~i~r~----~~~dGl~~ilaglfG~~~~tt~~~~n~g~i~ 259 (434)
+++++.+..-++..++...-+..-+...++..+. ++++.... .++.|+.++.=++.==+|..+.- +.-|..-
T Consensus 2 d~~~s~~~aG~va~lvg~tg~~aiv~qaa~a~g~---s~~q~~SWl~al~~~~Gl~~i~lSl~yR~Pi~~AW-StPGaAl 77 (378)
T PF03594_consen 2 DFSLSAVSAGFVAVLVGYTGPVAIVLQAAQAAGA---SPAQIASWLFALYLGMGLTSILLSLRYRMPIVTAW-STPGAAL 77 (378)
T ss_pred CCcHHHHHHHHHHHHhhccchHHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhc-chHHHHH
Confidence 3455566665666666665555555555554442 33344443 34555566655554445544443 2222111
Q ss_pred eeeeCcee-------EEEechhHHHHHHhhhcccceecccchHHHHHHHH
Q 013911 260 LTRVGSRR-------VVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYC 302 (434)
Q Consensus 260 ~Tgv~SR~-------~~~~a~~~lill~l~pk~~al~a~IP~pV~gg~li 302 (434)
........ .++++++++++.|+.+.|..++..||.++..+++-
T Consensus 78 L~~~~~~~~~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AMLA 127 (378)
T PF03594_consen 78 LATSLPGYSFAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAMLA 127 (378)
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 11011011 15788899999999999999999999998776643
Done!