Query 013911
Match_columns 434
No_of_seqs 184 out of 1652
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 19:24:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013911.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013911hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 100.0 7.2E-60 2.5E-64 488.2 1.0 344 3-402 60-419 (429)
2 3qe7_A Uracil permease; uracil 15.8 56 0.0019 33.0 1.8 76 227-303 45-131 (429)
3 4b4a_A TATC, SEC-independent p 15.6 61 0.0021 30.2 1.9 27 320-346 183-209 (249)
4 3hd6_A Ammonium transporter RH 13.7 1E+02 0.0035 31.7 3.1 34 373-406 409-442 (490)
5 2b2h_A AMT-1, ammonium transpo 11.3 70 0.0024 32.0 1.0 31 374-404 352-382 (399)
6 4f4l_A ION transport protein; 7.6 83 0.0029 25.3 -0.2 11 378-388 87-97 (112)
7 1bts_A BAND 3 anion transport 6.4 80 0.0027 19.0 -0.6 23 225-247 3-25 (26)
8 2jln_A MHP1; hydantoin, transp 4.7 3.6E+02 0.012 27.3 2.7 19 373-391 432-450 (501)
9 2lor_A Transmembrane protein 1 6.0 1.8E+02 0.0062 23.4 0.0 23 120-142 57-79 (108)
10 3b9w_A Ammonium transporter fa 4.0 5.1E+02 0.018 25.8 3.0 29 374-406 333-361 (407)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=100.00 E-value=7.2e-60 Score=488.16 Aligned_cols=344 Identities=19% Similarity=0.292 Sum_probs=297.1
Q ss_pred ccccccceEeeeeeeEEEecccCCChhHHHHHHHHhhhhHHHHHhHHHHHHhhh--hhh-HHHHHhcCCCccchhhhhhh
Q 013911 3 CAFKHHTTVINISLFWVVTLLSRFDAIQKFKRTMRAIQGSLIVASTLQIVLGFS--GLW-RNVTRFLSPLSVVPLISLVG 79 (434)
Q Consensus 3 ~~~~rlP~v~G~Sfa~i~~~~~~~~~~~~~~~~~~~~~ga~~vaGli~~llg~~--gl~-~~l~~~fppvV~G~~i~lIG 79 (434)
++++|+|++||+||+|++|+..... ++|++++|+++++|+++++++++ +++ +|++|+|||+|+|.++++||
T Consensus 60 ~~~~~lP~~~G~sfafi~~~~~i~~------~g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IG 133 (429)
T 3qe7_A 60 ICKGKIPAYLGSSFAFISPVLLLLP------LGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIG 133 (429)
T ss_dssp HTTTCCCCCEEECGGGHHHHHHHGG------GCHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHH
T ss_pred HcCCCCCeEecChHHHHHHHHHHHh------cCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHH
Confidence 5789999999999999999985432 47999999999999999999987 554 79999999999999999999
Q ss_pred chhhhccCCCcc-----------cceeechhHHHHHHHHHhhchhhhhcCcccccchhhhHHHHHHHHHHHHHhhccccC
Q 013911 80 FGLYEFGFPGVA-----------KCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYN 148 (434)
Q Consensus 80 l~l~~~g~~~~~-----------~~~~i~~~~l~~ii~l~~~~k~~~~~~~~~l~~~aiLigivvG~~~a~~~g~~~~~~ 148 (434)
+++++.++++.+ .++.+++.++++++++.++.| +++|++++|+|+++||++++.+|..
T Consensus 134 l~l~~~~~~~~~~~~~~~~~~~~~~~~la~~tl~iii~~~~~~k-------g~~~~~aiLigivvg~~~a~~~G~~---- 202 (429)
T 3qe7_A 134 LELAGVAAGMAGLLPAEGQTPDSKTIIISITTLAVTVLGSVLFR-------GFLAIIPILIGVLVGYALSFAMGIV---- 202 (429)
T ss_dssp HHHHHHHHHHHTSSCBTTBCCCHHHHHHHHHHHHHHHHHHHSSS-------TTTTTHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHhccccCCCCccccHHHHHHHHHHHHHHHHHHHHhc-------ccchhhHHHHHHHHHHHHHHHhcCC----
Confidence 999988765432 245677888888777766554 4678999999999999999999853
Q ss_pred CCCCCccceeccccCCCccCCCceecccCCCCCCCccChhhHHHHHHHHHHHHHhhcchhhhhhhhcCCCCCCccccccc
Q 013911 149 DAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRG 228 (434)
Q Consensus 149 ~~~~~~~~~~~vd~~~~v~~~p~f~~P~~~~~g~P~f~~~~i~~~~~i~lv~~~esig~~~a~~~~~~~~~~~~~~i~r~ 228 (434)
|++. +.++||+++|. |+.|+||++.+..++++++++++|++|++.++++.++++.++++++||+
T Consensus 203 ------------d~~~-v~~a~~~~lP~---~~~P~f~~~~i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~ 266 (429)
T 3qe7_A 203 ------------DTTP-IINAHWFALPT---LYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRS 266 (429)
T ss_dssp ------------TSSH-HHHSCSSCCCC---CCCCCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHH
T ss_pred ------------Cccc-ccccccccccC---CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchH
Confidence 4443 56789999995 5779999999999999999999999999999999987655467899999
Q ss_pred ccchhhhhhhhccccccccceeeeecceeeeeeeeCceeEEEechhHHHHHHhhhcccceecccchHHHHHHHHHHHHHh
Q 013911 229 VGWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYV 308 (434)
Q Consensus 229 ~~~dGl~~ilaglfG~~~~tt~~~~n~g~i~~Tgv~SR~~~~~a~~~lill~l~pk~~al~a~IP~pV~gg~liv~fg~i 308 (434)
+++||++|+++|+||++|.|+|+ ||+|+++.||++||++..++|+++++++++||++++++.||.||+||+++++||++
T Consensus 267 l~adGla~i~~glfGg~p~Tt~~-en~g~i~~tg~~sr~~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l~lfg~i 345 (429)
T 3qe7_A 267 MFANGLSTVISGFFGSTPNTTYG-ENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVI 345 (429)
T ss_dssp HHHHHHHHHHHHHHTCCCEEECH-HHHHHHHHHTBCCHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcchHH-HhHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred hccCcchh--hhccccccchhhhhhhhhhhccChhhhHHHhhhhcCcCcccccccccccccccccCChhhHHHHHHHHhh
Q 013911 309 GAGGLSFL--QFCNLNSFRVKFILGFSIFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLD 386 (434)
Q Consensus 309 ~~~Gi~~l--~~~~~~~~rn~~ivg~sl~~Gl~~p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~~gi~~g~l~ai~Ln 386 (434)
..+|+|.+ +++|++++||.+|+++++.+|++... +| ++.+..||+++|+++|++||
T Consensus 346 ~~~Gi~~l~~~~v~~~~~rn~~i~~~~l~~G~g~~~--------------------~~--~~~~~~~gi~~~~~~ai~ln 403 (429)
T 3qe7_A 346 GASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAK--------------------VN--IGAAELKGMALATIVGIGLS 403 (429)
T ss_dssp HHHHHHHHHHTTSCTTSHHHHHHHHHHHHHHHHCCC--------------------CC--SSSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHH--------------------Hh--hhhhccCcHHHHHHHHHHHH
Confidence 99999999 89999888999999999999997521 22 35678999999999999999
Q ss_pred ccccccCCcccccccc
Q 013911 387 NTLHKKDGQVRKDRGR 402 (434)
Q Consensus 387 ~~~~~~~~~~~~~~~~ 402 (434)
+++|++++.+++|..+
T Consensus 404 ~~l~~~~~~~~~~~~~ 419 (429)
T 3qe7_A 404 LIFKLISVLRPEEVVL 419 (429)
T ss_dssp HHHTCCC---------
T ss_pred HHhcCccccCCcceEe
Confidence 9999875555444444
No 2
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=15.80 E-value=56 Score=32.96 Aligned_cols=76 Identities=13% Similarity=0.096 Sum_probs=41.9
Q ss_pred ccccchhhhhhhhccccccccceeeeecceee----eeeeeCc----eeEEEechhHHHHHHhh-hccc--ceecccchH
Q 013911 227 RGVGWQGVGILLSGLFGTVNGTSVSVENAGLL----ALTRVGS----RRVVQISAGFMIFFSVL-GKFG--AVFASIPAP 295 (434)
Q Consensus 227 r~~~~dGl~~ilaglfG~~~~tt~~~~n~g~i----~~Tgv~S----R~~~~~a~~~lill~l~-pk~~--al~a~IP~p 295 (434)
.+++..|++|++=++++..+.-.+.+.|-..+ ...+ .+ --..+++|++.++++++ .++. .+...+|..
T Consensus 45 ~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi~~~~~i~~-~g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~Ppv 123 (429)
T 3qe7_A 45 TVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLP-LGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPA 123 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCCCEEECGGGHHHHHHHGG-GCHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCeEecChHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCe
Confidence 56777777777776664433322222332221 1111 11 01135677777777765 3443 688999988
Q ss_pred HHHHHHHH
Q 013911 296 IVAALYCL 303 (434)
Q Consensus 296 V~gg~liv 303 (434)
|+|.+...
T Consensus 124 viG~~i~~ 131 (429)
T 3qe7_A 124 AMGAIVAV 131 (429)
T ss_dssp HHHHHHHH
T ss_pred eeHHHHHH
Confidence 88887654
No 3
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=15.62 E-value=61 Score=30.25 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=18.3
Q ss_pred cccccchhhhhhhhhhhccChhhhHHH
Q 013911 320 NLNSFRVKFILGFSIFIGLSVPQYFNE 346 (434)
Q Consensus 320 ~~~~~rn~~ivg~sl~~Gl~~p~~~~~ 346 (434)
.+.+.|+..+++.-+...+-.||.+++
T Consensus 183 ~l~~~Rr~~iv~~~v~aAiiTPD~~sq 209 (249)
T 4b4a_A 183 QLASFRKYFIVIAFVIGAIIAPDVSTQ 209 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHCCcHHHH
Confidence 333567888888777766666876665
No 4
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=13.67 E-value=1e+02 Score=31.74 Aligned_cols=34 Identities=9% Similarity=0.094 Sum_probs=26.1
Q ss_pred ChhhHHHHHHHHhhccccccCCcccccccchhhh
Q 013911 373 SEPFVAGCVAFFLDNTLHKKDGQVRKDRGRHWWD 406 (434)
Q Consensus 373 ~gi~~g~l~ai~Ln~~~~~~~~~~~~~~~~~~~~ 406 (434)
-+++.+.++..+++.....+..+++|.+|++-|+
T Consensus 409 ~a~v~~~ii~~iLk~~~~lRvs~e~e~~g~d~we 442 (490)
T 3hd6_A 409 MALMGGIIVGLILRLPFWGQPSDENCFEDAVYWE 442 (490)
T ss_dssp HHHHHHHHHHHHHTSTTSCCCCTTSTTCGGGTSC
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHhCCCceee
Confidence 4566788888889988766666667888888886
No 5
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=11.34 E-value=70 Score=32.05 Aligned_cols=31 Identities=13% Similarity=0.005 Sum_probs=21.9
Q ss_pred hhhHHHHHHHHhhccccccCCcccccccchh
Q 013911 374 EPFVAGCVAFFLDNTLHKKDGQVRKDRGRHW 404 (434)
Q Consensus 374 gi~~g~l~ai~Ln~~~~~~~~~~~~~~~~~~ 404 (434)
..+.+.++..++|.+.+.+-.+|+|++|++.
T Consensus 352 ~~v~~~i~~~il~~~~glRv~~e~E~~GlD~ 382 (399)
T 2b2h_A 352 AFLVTLILAKAVDAAVGLRVSSQEEYVGLDL 382 (399)
T ss_dssp HHHHHHHHHHHHHHHTCSBCCHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhcccCCCCHHHHHhCCCH
Confidence 5556677777888777655556678888855
No 6
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=7.56 E-value=83 Score=25.30 Aligned_cols=11 Identities=9% Similarity=0.175 Sum_probs=3.1
Q ss_pred HHHHHHHhhcc
Q 013911 378 AGCVAFFLDNT 388 (434)
Q Consensus 378 g~l~ai~Ln~~ 388 (434)
-.++|+++|+.
T Consensus 87 NLfiaVi~~~f 97 (112)
T 4f4l_A 87 NLFIGIIVDAM 97 (112)
T ss_dssp HHHTTTC----
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 7
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=6.43 E-value=80 Score=19.01 Aligned_cols=23 Identities=22% Similarity=0.136 Sum_probs=16.4
Q ss_pred ccccccchhhhhhhhcccccccc
Q 013911 225 LSRGVGWQGVGILLSGLFGTVNG 247 (434)
Q Consensus 225 i~r~~~~dGl~~ilaglfG~~~~ 247 (434)
+++.+++++++.++=++|++-|.
T Consensus 3 v~E~i~s~ai~Gi~f~lf~gQPL 25 (26)
T 1bts_A 3 VSELLISTAVQGILFALLGAXXX 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHTTC---
T ss_pred hhHHHHHHHHHHHHHHHHhcccC
Confidence 45677888888888888888764
No 8
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=4.72 E-value=3.6e+02 Score=27.26 Aligned_cols=19 Identities=11% Similarity=-0.155 Sum_probs=15.1
Q ss_pred ChhhHHHHHHHHhhccccc
Q 013911 373 SEPFVAGCVAFFLDNTLHK 391 (434)
Q Consensus 373 ~gi~~g~l~ai~Ln~~~~~ 391 (434)
.|++++++++.++....|+
T Consensus 432 ~g~~va~v~Y~~l~~~~~~ 450 (501)
T 2jln_A 432 TGLIAALLLHIPAMRWVAK 450 (501)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCch
Confidence 4778888888888887765
No 9
>2lor_A Transmembrane protein 141; helical bundle; NMR {Homo sapiens}
Probab=6.04 E-value=1.8e+02 Score=23.43 Aligned_cols=23 Identities=13% Similarity=0.043 Sum_probs=17.9
Q ss_pred ccccchhhhHHHHHHHHHHHHHh
Q 013911 120 NIFDRFAVIFSVVIVWIYAHLLT 142 (434)
Q Consensus 120 ~~l~~~aiLigivvG~~~a~~~g 142 (434)
++-.+..+|+++++|+++++-..
T Consensus 57 pYp~qwniLVs~v~~svaSY~VT 79 (108)
T 2lor_A 57 PYPLQWSLLVAVVAGSVVSYGVT 79 (108)
Confidence 34457789999999999887553
No 10
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=3.95 E-value=5.1e+02 Score=25.78 Aligned_cols=29 Identities=3% Similarity=-0.116 Sum_probs=16.2
Q ss_pred hhhHHHHHHHHhhccccccCCcccccccchhhh
Q 013911 374 EPFVAGCVAFFLDNTLHKKDGQVRKDRGRHWWD 406 (434)
Q Consensus 374 gi~~g~l~ai~Ln~~~~~~~~~~~~~~~~~~~~ 406 (434)
..+.+.++..+++. +.++++|.+|..-|+
T Consensus 333 s~v~~~i~~~il~~----r~~~e~e~~g~~~we 361 (407)
T 3b9w_A 333 ALIGGVIAGALIKL----TGTTKQAYEDSHEFI 361 (407)
T ss_dssp HHHHHHHHHHHHHT----TCCCSSTTCGGGTSS
T ss_pred HHHHHHHHHHHHhC----CCCHHHHcCCccccc
Confidence 44556666666666 333445566655554
Done!