Query 013911
Match_columns 434
No_of_seqs 184 out of 1652
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 19:24:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013911.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013911hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 9.9 60 0.0044 28.4 2.3 19 185-203 22-40 (447)
2 d2e74e1 f.23.24.1 (E:1-32) Pet 3.3 3.6E+02 0.026 14.9 2.2 15 125-139 12-26 (32)
3 d3seba1 b.40.2.2 (A:1-121) Sta 3.1 2E+02 0.015 21.8 1.2 19 415-433 79-97 (121)
4 d2axpa1 c.37.1.1 (A:2-165) Hyp 2.6 1.9E+02 0.014 21.7 0.5 11 7-17 25-35 (164)
5 d1cixa_ g.3.6.2 (A:) Tachystat 2.5 2.1E+02 0.016 17.0 0.6 9 417-425 12-20 (44)
6 d2axta1 f.26.1.1 (A:10-344) Ph 2.5 3.9E+02 0.028 23.6 2.5 38 367-404 193-230 (335)
7 d2ffta1 g.88.1.1 (A:2-84) Thyl 2.2 2.4E+02 0.018 19.6 0.6 12 395-406 7-18 (83)
8 d1eu3a1 b.40.2.2 (A:2A-96) Str 2.2 1.6E+02 0.012 21.2 -0.4 36 396-432 41-81 (97)
9 d1kala_ g.3.3.1 (A:) Kalata B1 2.1 1.9E+02 0.014 15.8 -0.1 8 3-10 5-12 (29)
10 d1twfi1 g.41.3.1 (I:1-49) RBP9 2.0 2.1E+02 0.015 18.2 -0.0 8 386-393 12-19 (49)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=9.91 E-value=60 Score=28.42 Aligned_cols=19 Identities=0% Similarity=-0.096 Sum_probs=9.1
Q ss_pred cChhhHHHHHHHHHHHHHh
Q 013911 185 FDAGEAFAMMMASFVALVE 203 (434)
Q Consensus 185 f~~~~i~~~~~i~lv~~~e 203 (434)
..|..+...+.......++
T Consensus 22 ~~w~i~~~~~~~~~~~~~~ 40 (447)
T d1pw4a_ 22 LRWQIFLGIFFGYAAYYLV 40 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455554444444444444
No 2
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.29 E-value=3.6e+02 Score=14.90 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=9.4
Q ss_pred hhhhHHHHHHHHHHH
Q 013911 125 FAVIFSVVIVWIYAH 139 (434)
Q Consensus 125 ~aiLigivvG~~~a~ 139 (434)
.+...|+.+|.++++
T Consensus 12 ialffgiavgiifai 26 (32)
T d2e74e1 12 IALFFGIAVGIIFAI 26 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhheeeE
Confidence 355667777766654
No 3
>d3seba1 b.40.2.2 (A:1-121) Staphylococcal enterotoxin B, SEB {Staphylococcus aureus [TaxId: 1280]}
Probab=3.09 E-value=2e+02 Score=21.78 Aligned_cols=19 Identities=11% Similarity=0.387 Sum_probs=16.5
Q ss_pred cCcccccccccccccCCCC
Q 013911 415 TRSEEFYSLPFNLNKYFPS 433 (434)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~ 433 (434)
.+..|+||.+.+-.|+|++
T Consensus 79 ~K~VDIyG~~Y~~~C~~~~ 97 (121)
T d3seba1 79 DKYVDVFGANYYYQCYFSK 97 (121)
T ss_dssp TSEEEEEECCBCTTCCCCC
T ss_pred CCeeeEecccceeEEEecc
Confidence 5677899999999999874
No 4
>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}
Probab=2.62 E-value=1.9e+02 Score=21.66 Aligned_cols=11 Identities=9% Similarity=-0.064 Sum_probs=7.0
Q ss_pred ccceEeeeeee
Q 013911 7 HHTTVINISLF 17 (434)
Q Consensus 7 rlP~v~G~Sfa 17 (434)
++|++-|+||-
T Consensus 25 kypiikgssfe 35 (164)
T d2axpa1 25 KYPIIKGSSFE 35 (164)
T ss_dssp TCCEEECCCHH
T ss_pred cCceecCchhh
Confidence 56666666663
No 5
>d1cixa_ g.3.6.2 (A:) Tachystatin {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}
Probab=2.54 E-value=2.1e+02 Score=17.00 Aligned_cols=9 Identities=33% Similarity=0.456 Sum_probs=7.0
Q ss_pred ccccccccc
Q 013911 417 SEEFYSLPF 425 (434)
Q Consensus 417 ~~~~~~~~~ 425 (434)
+.+.||||.
T Consensus 12 vvrsyglpt 20 (44)
T d1cixa_ 12 VVRSYGLPT 20 (44)
T ss_dssp CSCCTTSCS
T ss_pred EEEccCCCC
Confidence 567799996
No 6
>d2axta1 f.26.1.1 (A:10-344) Photosystem Q(B) protein 1, PsbA1 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.47 E-value=3.9e+02 Score=23.58 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=27.1
Q ss_pred cccccCChhhHHHHHHHHhhccccccCCcccccccchh
Q 013911 367 VNVPFSSEPFVAGCVAFFLDNTLHKKDGQVRKDRGRHW 404 (434)
Q Consensus 367 ~~~~l~~gi~~g~l~ai~Ln~~~~~~~~~~~~~~~~~~ 404 (434)
+.-++++.+..+.=-+.+++.+.|++.+++-.++|.+.
T Consensus 193 Ia~~fG~aLl~AMHGatVls~l~~e~~e~~s~~~~~~f 230 (335)
T d2axta1 193 VAGVFGGALFCAMHGSLVTSSLIRETTETESANYGYKF 230 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTBBCCSCSSSCSGGGCCT
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCcCCCcCCcccCCCC
Confidence 44456777777777888999999887666655665544
No 7
>d2ffta1 g.88.1.1 (A:2-84) Thylakoid soluble phosphoprotein TSP9 {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=2.24 E-value=2.4e+02 Score=19.58 Aligned_cols=12 Identities=8% Similarity=0.321 Sum_probs=8.9
Q ss_pred cccccccchhhh
Q 013911 395 QVRKDRGRHWWD 406 (434)
Q Consensus 395 ~~~~~~~~~~~~ 406 (434)
..+||+++-+|-
T Consensus 7 g~KeeKg~idw~ 18 (83)
T d2ffta1 7 ETKQEKSFVDWL 18 (83)
T ss_dssp CCCCCCSHHHHH
T ss_pred CcccccchHHHH
Confidence 346788998883
No 8
>d1eu3a1 b.40.2.2 (A:2A-96) Streptococcal superantigen Smez-2 {Streptococcus pyogenes [TaxId: 1314]}
Probab=2.22 E-value=1.6e+02 Score=21.21 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=19.2
Q ss_pred ccccccchhhhhhc-----cccCCcCcccccccccccccCCC
Q 013911 396 VRKDRGRHWWDKFW-----SFKGDTRSEEFYSLPFNLNKYFP 432 (434)
Q Consensus 396 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 432 (434)
.|++|.+....+-. .+...++ .+++|||+.-+-.+.
T Consensus 41 ~r~~~~~yvdSevs~~~t~~F~kgDk-VdVFglp~~~~Yi~~ 81 (97)
T d1eu3a1 41 VRDARDFFINSEMDEYAANDFKTGDK-IAVFSVPFDWNYLSK 81 (97)
T ss_dssp EETTEEEEEEEECCHHHHTTCCTTCE-EEEEECEEEEECCST
T ss_pred ccccceEEEehhhhhhhhhccccCCE-EEEEecccchhhccc
Confidence 35556555443211 1333343 346999988775554
No 9
>d1kala_ g.3.3.1 (A:) Kalata B1 {African plant (Oldenlandia affinis) [TaxId: 60225]}
Probab=2.13 E-value=1.9e+02 Score=15.78 Aligned_cols=8 Identities=13% Similarity=0.272 Sum_probs=4.0
Q ss_pred ccccccce
Q 013911 3 CAFKHHTT 10 (434)
Q Consensus 3 ~~~~rlP~ 10 (434)
||.+.||+
T Consensus 5 ctrnglpi 12 (29)
T d1kala_ 5 CTRNGLPV 12 (29)
T ss_dssp CEETTEEC
T ss_pred eccCCccc
Confidence 45555554
No 10
>d1twfi1 g.41.3.1 (I:1-49) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.04 E-value=2.1e+02 Score=18.23 Aligned_cols=8 Identities=13% Similarity=0.260 Sum_probs=4.5
Q ss_pred hccccccC
Q 013911 386 DNTLHKKD 393 (434)
Q Consensus 386 n~~~~~~~ 393 (434)
|.+.||++
T Consensus 12 NmLYPKED 19 (49)
T d1twfi1 12 NMLYPRED 19 (49)
T ss_dssp CBCEEEEE
T ss_pred cccccCCc
Confidence 45567653
Done!