Query 013912
Match_columns 434
No_of_seqs 378 out of 1721
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 19:25:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013912.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013912hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4d9s_A UVB-resistance protein 100.0 1.2E-51 4.1E-56 417.5 27.8 306 3-372 69-375 (406)
2 4d9s_A UVB-resistance protein 100.0 1.2E-49 4.1E-54 402.8 33.9 255 3-292 122-376 (406)
3 3kci_A Probable E3 ubiquitin-p 100.0 1.6E-49 5.4E-54 399.8 28.8 253 3-292 108-364 (389)
4 3kci_A Probable E3 ubiquitin-p 100.0 2.8E-49 9.5E-54 398.0 27.3 303 3-371 54-362 (389)
5 1a12_A RCC1, regulator of chro 100.0 9.2E-49 3.2E-53 397.2 24.9 296 2-361 59-373 (413)
6 1a12_A RCC1, regulator of chro 100.0 1.6E-47 5.6E-52 388.0 31.2 257 2-293 111-385 (413)
7 3mvd_K Regulator of chromosome 100.0 3.4E-48 1.2E-52 394.1 25.8 304 1-372 74-392 (423)
8 3of7_A Regulator of chromosome 100.0 1.4E-47 4.9E-52 395.0 30.2 278 2-315 148-444 (473)
9 3of7_A Regulator of chromosome 100.0 2.4E-47 8.2E-52 393.3 24.4 248 2-281 67-349 (473)
10 3mvd_K Regulator of chromosome 100.0 1.7E-45 5.7E-50 374.3 33.3 251 2-294 127-395 (423)
11 3qhy_B Beta-lactamase inhibito 100.0 1.4E-39 4.6E-44 313.1 21.5 192 1-280 23-214 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 2.6E-38 8.9E-43 304.2 21.1 191 2-280 63-253 (282)
13 4gbf_A Phikz131; 7-bladed beta 96.6 0.0068 2.3E-07 55.1 8.7 126 58-209 240-376 (400)
14 4gbf_A Phikz131; 7-bladed beta 96.6 0.0066 2.3E-07 55.2 8.6 122 1-160 238-380 (400)
15 2zwa_A Leucine carboxyl methyl 85.2 16 0.00053 38.5 15.3 20 189-208 597-616 (695)
16 3uc1_A DNA gyrase subunit A; D 72.3 65 0.0022 30.3 22.6 163 7-205 49-224 (327)
17 2zwa_A Leucine carboxyl methyl 66.3 1.3E+02 0.0044 31.3 20.3 18 253-271 598-615 (695)
18 1suu_A DNA gyrase subunit A; t 62.5 99 0.0034 28.7 17.8 168 7-208 54-230 (312)
19 3iv1_A Tumor susceptibility ge 60.8 6.2 0.00021 29.0 2.9 20 406-426 4-23 (78)
20 1p22_A F-BOX/WD-repeat protein 57.9 1.3E+02 0.0044 28.5 27.3 190 4-273 136-325 (435)
21 1p22_A F-BOX/WD-repeat protein 55.9 1.4E+02 0.0047 28.3 25.2 189 3-271 175-363 (435)
22 3no2_A Uncharacterized protein 54.5 1.2E+02 0.0041 27.1 20.3 117 57-212 136-266 (276)
23 2ovr_B FBW7, F-BOX/WD repeat p 53.0 1.5E+02 0.0053 28.0 25.8 107 121-273 241-348 (445)
24 2ovr_B FBW7, F-BOX/WD repeat p 51.8 1.6E+02 0.0055 27.8 26.8 111 121-273 281-391 (445)
25 3ii7_A Kelch-like protein 7; p 47.9 74 0.0025 28.7 9.1 18 190-208 192-209 (306)
26 2vpj_A Kelch-like protein 12; 44.7 1.4E+02 0.0047 26.7 10.3 18 12-30 55-72 (301)
27 3no0_A DNA gyrase subunit A; D 43.7 1.9E+02 0.0064 26.2 21.5 154 11-208 35-195 (276)
28 4asc_A Kelch repeat and BTB do 43.4 1.5E+02 0.0051 26.7 10.5 19 11-29 36-54 (315)
29 2xn4_A Kelch-like protein 2; s 42.6 1.2E+02 0.0042 27.0 9.7 18 12-30 54-71 (302)
30 1zi0_A DNA gyrase subunit A; b 39.2 2.3E+02 0.0079 26.0 18.9 163 6-204 48-221 (307)
31 3l6v_A GYRA, DNA gyrase subuni 39.2 2.6E+02 0.0089 26.6 18.8 127 6-161 52-185 (370)
32 1k3i_A Galactose oxidase precu 38.2 1.4E+02 0.0047 30.6 10.2 19 189-207 287-305 (656)
33 1zgk_A Kelch-like ECH-associat 37.7 48 0.0017 30.1 6.0 17 190-207 207-223 (308)
34 1k3i_A Galactose oxidase precu 37.0 69 0.0024 33.0 7.6 18 253-271 288-305 (656)
35 4asc_A Kelch repeat and BTB do 35.6 2.4E+02 0.0083 25.2 10.8 17 12-29 91-107 (315)
36 2woz_A Kelch repeat and BTB do 29.9 3E+02 0.01 24.6 11.1 19 11-29 47-65 (318)
37 1dvk_A PRP18; PRE-mRNA splicin 23.9 1.2E+02 0.0041 25.7 5.3 49 380-428 42-94 (173)
38 2rr9_C Putative uncharacterize 23.5 42 0.0014 21.1 1.8 24 406-429 23-46 (46)
39 1xip_A Nucleoporin NUP159; bet 20.9 3.7E+02 0.013 25.7 9.1 65 183-272 90-154 (388)
40 3no2_A Uncharacterized protein 20.5 4.4E+02 0.015 23.2 22.0 24 255-280 245-268 (276)
No 1
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=1.2e-51 Score=417.48 Aligned_cols=306 Identities=29% Similarity=0.489 Sum_probs=252.6
Q ss_pred CeEEEEecCCeEEEEecCC-cEEEecCCCCCCCCCCCCccccccccceeeccCCCCcEEEEEecCCeEEEEEcCCCcccC
Q 013912 3 QICSVKAGGMMSLAIDNAG-ALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKG 81 (434)
Q Consensus 3 kI~~Va~G~~h~~alt~~G-~vy~wG~n~~G~qlg~g~~~~~~~~~p~~v~~~~~~~I~~Vs~G~~hs~~lt~~G~vy~~ 81 (434)
+|++|+||..|++||+++| +||+||.|.+| |||.+.. .....|.++..+.+.+|++|+||.+|+++|+++|+
T Consensus 69 ~i~~va~G~~ht~al~~~gg~v~~wG~n~~G-qLG~g~~--~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~---- 141 (406)
T 4d9s_A 69 QIVSVTCGADHTVAYSQSGMEVYSWGWGDFG-RLGHGNS--SDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGE---- 141 (406)
T ss_dssp CEEEEEECSSEEEEEETTTTEEEEEECCGGG-TTCSSSC--CCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSC----
T ss_pred CEEEEEeCcceEEEEECCCCEEEEEcCCCCc-CCCCCCC--CccccceEecccCCCCEEEEEEChhheEEEcCCCc----
Confidence 7999999999999999886 99999999999 9998864 45678888888888899999999999999999996
Q ss_pred CCceEEEeeCCCCCcCCCCCCCCeecceeeeccCCCCCCcEEEEeecCceEEEEEccCCCCCcCCCeEEEeecCCCCCCC
Q 013912 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161 (434)
Q Consensus 82 ~~~~vy~wG~N~~GQLG~g~~~~~~~P~~v~~~~~~~~~~I~~Is~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~~GqLG 161 (434)
||+||.|.+||||.++......|+++..+.. .+|++|+||.+|+++|+++|+ ||+||.|.+||||
T Consensus 142 ----v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~---~~i~~va~G~~hs~alt~~G~--------v~~wG~n~~GqlG 206 (406)
T 4d9s_A 142 ----VQSWGRNQNGQLGLGDTEDSLVPQKIQAFEG---IRIKMVAAGAEHTAAVTEDGD--------LYGWGWGRYGNLG 206 (406)
T ss_dssp ----EEEEECCTTSTTCSSSCCCEEEEEECGGGTT---CCEEEEEECSSEEEEEETTSC--------EEEEECCTTSTTC
T ss_pred ----EEEeCCCCCccCCCCCCCCcccceEecccCC---CcEEEEecCCCeEEEEeCCCC--------EEEeeCCCCCCCC
Confidence 9999999999999999999999999987654 379999999999999999999 9999999999999
Q ss_pred CCCCCCccccEEeeeCCCcceEEEEEecCceEEEEecCCcEEEEeCCCCCCCCCCCCCCCCCCCCceeeEEeeCCCCCCC
Q 013912 162 HGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241 (434)
Q Consensus 162 ~g~~~~~~~p~~v~~l~~~~~I~~I~~G~~hs~alt~dG~Vy~wG~n~~lG~~~~~~~~~~~~~~~~~P~~i~~~~~~~~ 241 (434)
++.......|+++..+ ...+|++|+||.+|+++|+++|+||+||.|. +|++... .......|.++.. .
T Consensus 207 ~g~~~~~~~p~~v~~~-~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~-~GqlG~g-----~~~~~~~p~~v~~-----~ 274 (406)
T 4d9s_A 207 LGDRTDRLVPERVTST-GGEKMSMVACGWRHTISVSYSGALYTYGWSK-YGQLGHG-----DLEDHLIPHKLEA-----L 274 (406)
T ss_dssp SSSSCCEEEEEECCCS-TTCCEEEEEECSSEEEEEETTCCEEEEECCT-TSTTCSS-----SCCCEEEEEECGG-----G
T ss_pred CCCCCCcCccEEeccc-CCceEEEEEECCCcEEEEcCCCCEEEeeCCC-CCCCCCC-----CCcCccccEEecc-----c
Confidence 9998888899999766 4568999999999999999999999999998 3333221 2345678888876 2
Q ss_pred CCCCcEEEEecCceeEEEEcCCCeEEEEeCCCCCCCCCCCCCCeeccEEecCCcchhhhccccccccCCCcccccccccc
Q 013912 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDELNTGGLDDEIKTKDLEG 321 (434)
Q Consensus 242 ~~~~i~~I~~G~~hs~~lt~dG~~vy~wG~n~~GqLG~g~~~~~~~P~~V~~p~~~~~f~~~~~~~~~~~~~~~~~~~~~ 321 (434)
...+|++|+||..|+++|+++| +||+||+|.+||||.++..+...|++|.+|... .+.++.|+.
T Consensus 275 ~~~~v~~i~~G~~hs~alt~~G-~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~------~v~~va~G~--------- 338 (406)
T 4d9s_A 275 SNSFISQISGGWRHTMALTSDG-KLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQ------KVVQVSCGW--------- 338 (406)
T ss_dssp TTSCEEEEEECSSEEEEEETTS-CEEEEECCTTSTTCSSSSSCEEEEEEECCGGGC------CEEEEEECS---------
T ss_pred CCCCEEEEEecCCEEEEEcCCC-eEEEeeCCCCCCCCCCCCCCCccCEEEeccCCC------cEEEEEeCC---------
Confidence 2346999999999999999999 999999999999999999999999999765221 222233332
Q ss_pred hhhhhhhhhhHHHHHHHHhhhhhhhhhhcccccceeeccccCccCCccccc
Q 013912 322 AEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIFGKPFAAEQDIPISL 372 (434)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~hgql~~~~~~~~~~~~~~l 372 (434)
.+...+.++.. ++.||++.||||-.... ..+..|..+
T Consensus 339 ------------~hs~alt~~G~-v~~wG~n~~GqLG~g~~-~~~~~P~~v 375 (406)
T 4d9s_A 339 ------------RHTLAVTERNN-VFAWGRGTNGQLGIGES-VDRNFPKII 375 (406)
T ss_dssp ------------SEEEEEETTSC-EEEEECCTTSTTCSSSC-CCEEEEEEC
T ss_pred ------------CeEEEEeCCCC-EEEecCCCCCccCCCCC-CCCcCCEEe
Confidence 22223344444 55999999999965433 234455443
No 2
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=1.2e-49 Score=402.79 Aligned_cols=255 Identities=32% Similarity=0.589 Sum_probs=226.7
Q ss_pred CeEEEEecCCeEEEEecCCcEEEecCCCCCCCCCCCCccccccccceeeccCCCCcEEEEEecCCeEEEEEcCCCcccCC
Q 013912 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGE 82 (434)
Q Consensus 3 kI~~Va~G~~h~~alt~~G~vy~wG~n~~G~qlg~g~~~~~~~~~p~~v~~~~~~~I~~Vs~G~~hs~~lt~~G~vy~~~ 82 (434)
+|++|+||..|++||+++|+||+||.|.+| |||.+.. .....|.++..+.+.+|++|+||.+|+++|+++|+
T Consensus 122 ~i~~ia~G~~h~~alt~~G~v~~wG~n~~G-qLG~g~~--~~~~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~----- 193 (406)
T 4d9s_A 122 RIKQIACGDSHCLAVTMEGEVQSWGRNQNG-QLGLGDT--EDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGD----- 193 (406)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCTTS-TTCSSSC--CCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSC-----
T ss_pred CEEEEEEChhheEEEcCCCcEEEeCCCCCc-cCCCCCC--CCcccceEecccCCCcEEEEecCCCeEEEEeCCCC-----
Confidence 799999999999999999999999999999 9998864 45577888888888899999999999999999996
Q ss_pred CceEEEeeCCCCCcCCCCCCCCeecceeeeccCCCCCCcEEEEeecCceEEEEEccCCCCCcCCCeEEEeecCCCCCCCC
Q 013912 83 DLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162 (434)
Q Consensus 83 ~~~vy~wG~N~~GQLG~g~~~~~~~P~~v~~~~~~~~~~I~~Is~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~~GqLG~ 162 (434)
||+||.|.+||||+++......|+++..+.. .+|++|+||.+|+++|+++|+ ||+||.|.+||||+
T Consensus 194 ---v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~---~~i~~va~G~~ht~~l~~~G~--------v~~wG~n~~GqlG~ 259 (406)
T 4d9s_A 194 ---LYGWGWGRYGNLGLGDRTDRLVPERVTSTGG---EKMSMVACGWRHTISVSYSGA--------LYTYGWSKYGQLGH 259 (406)
T ss_dssp ---EEEEECCTTSTTCSSSSCCEEEEEECCCSTT---CCEEEEEECSSEEEEEETTCC--------EEEEECCTTSTTCS
T ss_pred ---EEEeeCCCCCCCCCCCCCCcCccEEecccCC---ceEEEEEECCCcEEEEcCCCC--------EEEeeCCCCCCCCC
Confidence 9999999999999999999999999876543 379999999999999999999 99999999999999
Q ss_pred CCCCCccccEEeeeCCCcceEEEEEecCceEEEEecCCcEEEEeCCCCCCCCCCCCCCCCCCCCceeeEEeeCCCCCCCC
Q 013912 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242 (434)
Q Consensus 163 g~~~~~~~p~~v~~l~~~~~I~~I~~G~~hs~alt~dG~Vy~wG~n~~lG~~~~~~~~~~~~~~~~~P~~i~~~~~~~~~ 242 (434)
++......|+++..+. ..+|++|+||.+|++||+++|+||+||.|. +|++... .......|+++.. ..
T Consensus 260 g~~~~~~~p~~v~~~~-~~~v~~i~~G~~hs~alt~~G~v~~wG~n~-~GqLG~g-----~~~~~~~p~~v~~-----~~ 327 (406)
T 4d9s_A 260 GDLEDHLIPHKLEALS-NSFISQISGGWRHTMALTSDGKLYGWGWNK-FGQVGVG-----NNLDQCSPVQVRF-----PD 327 (406)
T ss_dssp SSCCCEEEEEECGGGT-TSCEEEEEECSSEEEEEETTSCEEEEECCT-TSTTCSS-----SSSCEEEEEEECC-----GG
T ss_pred CCCcCccccEEecccC-CCCEEEEEecCCEEEEEcCCCeEEEeeCCC-CCCCCCC-----CCCCCccCEEEec-----cC
Confidence 9988889999998774 567999999999999999999999999998 3333221 1235567888864 22
Q ss_pred CCCcEEEEecCceeEEEEcCCCeEEEEeCCCCCCCCCCCCCCeeccEEec
Q 013912 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292 (434)
Q Consensus 243 ~~~i~~I~~G~~hs~~lt~dG~~vy~wG~n~~GqLG~g~~~~~~~P~~V~ 292 (434)
..+|++|+||.+|+++|+++| +||+||+|.+||||+|+..+...|+.|+
T Consensus 328 ~~~v~~va~G~~hs~alt~~G-~v~~wG~n~~GqLG~g~~~~~~~P~~v~ 376 (406)
T 4d9s_A 328 DQKVVQVSCGWRHTLAVTERN-NVFAWGRGTNGQLGIGESVDRNFPKIIE 376 (406)
T ss_dssp GCCEEEEEECSSEEEEEETTS-CEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred CCcEEEEEeCCCeEEEEeCCC-CEEEecCCCCCccCCCCCCCCcCCEEee
Confidence 357999999999999999999 9999999999999999999999998885
No 3
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.6e-49 Score=399.76 Aligned_cols=253 Identities=30% Similarity=0.610 Sum_probs=225.9
Q ss_pred CeEEEEecCCeEEEEecCCcEEEecCCCCCCCCCCCCccccccccceeeccCCCCcEEEEEecCCeEEEEEcCCCcccCC
Q 013912 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGE 82 (434)
Q Consensus 3 kI~~Va~G~~h~~alt~~G~vy~wG~n~~G~qlg~g~~~~~~~~~p~~v~~~~~~~I~~Vs~G~~hs~~lt~~G~vy~~~ 82 (434)
++++|+||..|++||+++|+||+||.|.+| |||.+.. .....|.+++.+.+.+|++|+||.+|+++|+++|+
T Consensus 108 ~~v~i~~G~~h~~al~~~G~v~~wG~n~~G-qLG~g~~--~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~----- 179 (389)
T 3kci_A 108 KKVAVNSGGKHCLALSSEGEVYSWGEAEDG-KLGHGNR--SPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGD----- 179 (389)
T ss_dssp EEEEECTTCSEEEEEETTSCEEEEECCGGG-TTCSSSC--CCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSC-----
T ss_pred eEEEECcCCCeEEEEcCCCCEEEEeCCCCC-cCCCCCC--ccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCe-----
Confidence 457899999999999999999999999999 9998864 34567888888888899999999999999999996
Q ss_pred CceEEEeeCCCCCcCCCCCCCCeecceeeeccCCCCCCcEEEEeecC--ceEEEEEccCCCCCcCCCeEEEeecCCCCCC
Q 013912 83 DLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQL 160 (434)
Q Consensus 83 ~~~vy~wG~N~~GQLG~g~~~~~~~P~~v~~~~~~~~~~I~~Is~G~--~ht~~Lt~~G~~~~~~~~~vy~wG~n~~GqL 160 (434)
||+||.|.+||||.++......|+++..+.. .+|++|+||. .|+++|+++|+ ||+||.|.+|||
T Consensus 180 ---v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~---~~v~~ia~G~g~~~t~~l~~~G~--------v~~wG~n~~GqL 245 (389)
T 3kci_A 180 ---LYTWGKGRYGRLGHSDSEDQLKPKLVEALQG---HRVVDIACGSGDAQTLCLTDDDT--------VWSWGDGDYGKL 245 (389)
T ss_dssp ---EEEEECCGGGTTCSSSCCCEEEEEECGGGTT---SCEEEEEECCSSCEEEEEETTTE--------EEEEECCGGGTT
T ss_pred ---EEEeCCCCCCCcCCCCCcccccceEecccCC---CeEEEEEEcCCCcEEEEEccCCE--------EEEEeCCCCCCC
Confidence 9999999999999999999999999987654 3799999995 89999999999 999999999999
Q ss_pred CCCCCCCccccEEeeeCCCcceEEEEEecCceEEEEecCCcEEEEeCCC--CCCCCCCCCCCCCCCCCceeeEEeeCCCC
Q 013912 161 GHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGP 238 (434)
Q Consensus 161 G~g~~~~~~~p~~v~~l~~~~~I~~I~~G~~hs~alt~dG~Vy~wG~n~--~lG~~~~~~~~~~~~~~~~~P~~i~~~~~ 238 (434)
|.+.......|.++..+. ..+|++|+||.+|++||+++|+||+||.|. |||.+ .......|+++..
T Consensus 246 G~g~~~~~~~p~~v~~~~-~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g--------~~~~~~~P~~v~~--- 313 (389)
T 3kci_A 246 GRGGSDGCKVPMKIDSLT-GLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHG--------SDDHVRRPRQVQG--- 313 (389)
T ss_dssp SSSSCCCEEEEEECGGGT-TSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSS--------SCCCEEEEEECGG---
T ss_pred CCCCCCCccccEEecccC-CCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCC--------CCccccCCeEecc---
Confidence 999988889999998774 567999999999999999999999999998 44442 1235678988876
Q ss_pred CCCCCCCcEEEEecCceeEEEEcCCCeEEEEeCCCCCCCCCCCCCCeeccEEec
Q 013912 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292 (434)
Q Consensus 239 ~~~~~~~i~~I~~G~~hs~~lt~dG~~vy~wG~n~~GqLG~g~~~~~~~P~~V~ 292 (434)
+...+|++|+||.+|+++++++| +||+||+|.+||||+++..+...|++|.
T Consensus 314 --l~~~~v~~ia~G~~h~~al~~~G-~v~~wG~n~~GqLG~g~~~~~~~P~~v~ 364 (389)
T 3kci_A 314 --LQGKKVIAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLVA 364 (389)
T ss_dssp --GTTCCEEEEEECSSEEEEEETTC-CEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred --CCCCCEEEEEeccCeEEEECCCC-CEEEeeCCCCCcCCCCCCCCccCcEEec
Confidence 23456999999999999999999 9999999999999999999998998884
No 4
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.8e-49 Score=397.96 Aligned_cols=303 Identities=26% Similarity=0.410 Sum_probs=246.6
Q ss_pred CeEEEEecCCeEEEEecCCcEEEecCCCCCCCCCCCCccccccccceeeccCCCC--cEEEEEecCCeEEEEEcCCCccc
Q 013912 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGH--TVVKVACGSEHVVALVSAGETYK 80 (434)
Q Consensus 3 kI~~Va~G~~h~~alt~~G~vy~wG~n~~G~qlg~g~~~~~~~~~p~~v~~~~~~--~I~~Vs~G~~hs~~lt~~G~vy~ 80 (434)
+|++|+||..|+++|+++|+||+||.|.+| |||.+.. .....|.+++.+.+. ++++|+||.+|+++|+++|+
T Consensus 54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~G-qLG~g~~--~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~--- 127 (389)
T 3kci_A 54 RPVQLIGGEQTLFAVTADGKLYATGYGAGG-RLGIGGT--ESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGE--- 127 (389)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEECCGGG-TTSSSSS--CCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSC---
T ss_pred ceEEEEeCCCeEEEEcCCCcEEEEECCCCC-CCCCCCc--CCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCC---
Confidence 689999999999999999999999999999 9998864 455677788777665 45788999999999999996
Q ss_pred CCCceEEEeeCCCCCcCCCCCCCCeecceeeeccCCCCCCcEEEEeecCceEEEEEccCCCCCcCCCeEEEeecCCCCCC
Q 013912 81 GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQL 160 (434)
Q Consensus 81 ~~~~~vy~wG~N~~GQLG~g~~~~~~~P~~v~~~~~~~~~~I~~Is~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~~GqL 160 (434)
||+||.|.+||||.++......|+.+..+.. .+|++|+||.+|+++|+++|+ ||+||.|.+|||
T Consensus 128 -----v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~---~~i~~va~G~~hs~alt~~G~--------v~~wG~n~~GqL 191 (389)
T 3kci_A 128 -----VYSWGEAEDGKLGHGNRSPCDRPRVIESLRG---IEVVDVAAGGAHSACVTAAGD--------LYTWGKGRYGRL 191 (389)
T ss_dssp -----EEEEECCGGGTTCSSSCCCEEEEEECGGGTT---SCEEEEEECSSEEEEEETTSC--------EEEEECCGGGTT
T ss_pred -----EEEEeCCCCCcCCCCCCccCcCCeEecccCC---CeEEEEEeCcCeEEEEeCCCe--------EEEeCCCCCCCc
Confidence 9999999999999999999999999987654 379999999999999999999 999999999999
Q ss_pred CCCCCCCccccEEeeeCCCcceEEEEEecC--ceEEEEecCCcEEEEeCCC--CCCCCCCCCCCCCCCCCceeeEEeeCC
Q 013912 161 GHGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGN 236 (434)
Q Consensus 161 G~g~~~~~~~p~~v~~l~~~~~I~~I~~G~--~hs~alt~dG~Vy~wG~n~--~lG~~~~~~~~~~~~~~~~~P~~i~~~ 236 (434)
|++.......|+++..+ ...+|++|+||. .|+++|+++|+||+||.|. |||.+ .......|+++..
T Consensus 192 G~~~~~~~~~p~~v~~~-~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g--------~~~~~~~p~~v~~- 261 (389)
T 3kci_A 192 GHSDSEDQLKPKLVEAL-QGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRG--------GSDGCKVPMKIDS- 261 (389)
T ss_dssp CSSSCCCEEEEEECGGG-TTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSS--------SCCCEEEEEECGG-
T ss_pred CCCCCcccccceEeccc-CCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCC--------CCCCccccEEecc-
Confidence 99999888999999877 456899999995 8999999999999999998 44442 1235567888876
Q ss_pred CCCCCCCCCcEEEEecCceeEEEEcCCCeEEEEeCCCCCCCCCCCCCCeeccEEecCCcchhhhccccccccCCCccccc
Q 013912 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDELNTGGLDDEIKT 316 (434)
Q Consensus 237 ~~~~~~~~~i~~I~~G~~hs~~lt~dG~~vy~wG~n~~GqLG~g~~~~~~~P~~V~~p~~~~~f~~~~~~~~~~~~~~~~ 316 (434)
....+|++|+||..|+++|+++| +||+||+|.+||||++.......|++|.. +....+.++.++..+
T Consensus 262 ----~~~~~v~~v~~G~~hs~alt~~G-~v~~wG~n~~GqLG~g~~~~~~~P~~v~~------l~~~~v~~ia~G~~h-- 328 (389)
T 3kci_A 262 ----LTGLGVVKVECGSQFSVALTKSG-AVYTWGKGDYHRLGHGSDDHVRRPRQVQG------LQGKKVIAIATGSLH-- 328 (389)
T ss_dssp ----GTTSCEEEEEEETTEEEEEETTS-CEEEEECCGGGTTCSSSCCCEEEEEECGG------GTTCCEEEEEECSSE--
T ss_pred ----cCCCcEEEEeCCCCEEEEEeCCC-eEEEEeCCCCCCCCCCCCccccCCeEecc------CCCCCEEEEEeccCe--
Confidence 22346999999999999999999 99999999999999999888888888752 222222223333221
Q ss_pred ccccchhhhhhhhhhHHHHHHHHhhhhhhhhhhcccccceeeccccCccCCcccc
Q 013912 317 KDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIFGKPFAAEQDIPIS 371 (434)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~hgql~~~~~~~~~~~~~~ 371 (434)
...+.++.. ++.||.+.||||-.... .....|..
T Consensus 329 -------------------~~al~~~G~-v~~wG~n~~GqLG~g~~-~~~~~P~~ 362 (389)
T 3kci_A 329 -------------------CVCCTEDGE-VYTWGDNDEGQLGDGTT-NAIQRPRL 362 (389)
T ss_dssp -------------------EEEEETTCC-EEEEECCTTSTTCSSSC-CCEEEEEE
T ss_pred -------------------EEEECCCCC-EEEeeCCCCCcCCCCCC-CCccCcEE
Confidence 112334444 55999999999965444 33344443
No 5
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=9.2e-49 Score=397.17 Aligned_cols=296 Identities=23% Similarity=0.349 Sum_probs=230.8
Q ss_pred CCeEEEEecCCeEEEEecCCcEEEecCCCCCCCCCCCCccccccccceeeccCCCCcEEEEEecCCeEEEEEcCCCcccC
Q 013912 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKG 81 (434)
Q Consensus 2 ~kI~~Va~G~~h~~alt~~G~vy~wG~n~~G~qlg~g~~~~~~~~~p~~v~~~~~~~I~~Vs~G~~hs~~lt~~G~vy~~ 81 (434)
.+|++|+||..|+++|+++|+||+||.|.+| |||.+.........|.++. +. .+|++|+||.+|+++|+++|+
T Consensus 59 ~~i~~va~G~~hs~~l~~~G~v~~wG~n~~G-qLG~~~~~~~~~~~P~~v~-l~-~~i~~va~G~~hs~alt~~G~---- 131 (413)
T 1a12_A 59 EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEG-ALGRDTSVEGSEMVPGKVE-LQ-EKVVQVSAGDSHTAALTDDGR---- 131 (413)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEECCTTS-TTCSCCCSTTGGGSCEECC-CC-SCEEEEEECSSEEEEEETTSC----
T ss_pred CCeEEEEeCCCeEEEEcCCCCEEEEECCCCC-CCCCCCCCCccccCCeEec-CC-CcEEEEecCCCeEEEEcCCCc----
Confidence 5799999999999999999999999999999 9999876545667788874 33 389999999999999999996
Q ss_pred CCceEEEeeC--CCCCcCCCCCCCCe-ecceeeeccCCCCCCcEEEEeecCceEEEEEccCCCCCcCCCeEEEeecCCCC
Q 013912 82 EDLVCYSWGA--NNNGQLGLGDRESR-LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENG 158 (434)
Q Consensus 82 ~~~~vy~wG~--N~~GQLG~g~~~~~-~~P~~v~~~~~~~~~~I~~Is~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~~G 158 (434)
||+||. |.+||||.++.... ..|.++.. ..+|++|+||.+|+++|+++|+ ||+||.|.+|
T Consensus 132 ----v~~wG~~~n~~GqlG~~~~~~~~~~P~~v~~-----~~~i~~ia~G~~hs~alt~~G~--------v~~wG~n~~G 194 (413)
T 1a12_A 132 ----VFLWGSFRDNNGVIGLLEPMKKSMVPVQVQL-----DVPVVKVASGNDHLVMLTADGD--------LYTLGCGEQG 194 (413)
T ss_dssp ----EEEEECEEETTEEEESSBBTBCEEEEEEECC-----SSCEEEEEECSSEEEEEETTSC--------EEEEECCTTS
T ss_pred ----EEEeeCCcCCCCccCcCCccccccCCEEecC-----CCCEEEEEecCceEEEEcCCCC--------EEEeeCCCCC
Confidence 999999 99999999876553 45877731 2379999999999999999999 9999999999
Q ss_pred CCCCCCCC-----------CccccEEeeeCC----CcceEEEEEecCceEEEEecCCcEEEEeCCCCCCCCCCCCCCCCC
Q 013912 159 QLGHGTTQ-----------SALVPEQVKELP----QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNE 223 (434)
Q Consensus 159 qLG~g~~~-----------~~~~p~~v~~l~----~~~~I~~I~~G~~hs~alt~dG~Vy~wG~n~~lG~~~~~~~~~~~ 223 (434)
|||.+... ....|+.+...+ ...+|++|+||.+|++||+++|+||+||.|. +|++... .
T Consensus 195 qLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~-~gqLG~~-----~ 268 (413)
T 1a12_A 195 QLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSN-YHQLGTP-----G 268 (413)
T ss_dssp TTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCT-TSTTSCS-----S
T ss_pred ccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCC-CcCCCCC-----C
Confidence 99987542 125676665322 3467999999999999999999999999997 3333221 1
Q ss_pred CCCceeeEEeeCCCCCCCCCCCcEEEEecCceeEEEEcCCCeEEEEeCCCCCCCCCC-CCCCeeccEEecCCcchhhhcc
Q 013912 224 AGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG-KTIDFFAPAIVLWPPLTEEFKQ 302 (434)
Q Consensus 224 ~~~~~~P~~i~~~~~~~~~~~~i~~I~~G~~hs~~lt~dG~~vy~wG~n~~GqLG~g-~~~~~~~P~~V~~p~~~~~f~~ 302 (434)
......|+.+..+.. ...+|++|+||..|+++|+++| +||+||+|.+||||++ +..+...|++|... .
T Consensus 269 ~~~~~~P~~v~~l~~---~~~~v~~ia~G~~hs~al~~~G-~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l--~----- 337 (413)
T 1a12_A 269 TESCFIPQNLTSFKN---STKSWVGFSGGQHHTVCMDSEG-KAYSLGRAEYGRLGLGEGAEEKSIPTLISRL--P----- 337 (413)
T ss_dssp CSCEEEEEECGGGCC---TTCCEEEEEECSSEEEEEETTS-CEEEEECCGGGTTCSCTTCCCEEEEEECCSS--S-----
T ss_pred CCcccccEEchhccC---CCceEEEEecccceEEEEeCCC-CEEEeeCCCCCccCCCCCCccccCCEEeccc--C-----
Confidence 234578988876322 1135999999999999999999 9999999999999999 45667788877422 1
Q ss_pred ccccccCCCcccccccccchhhhhhhhhhHHHHHHHHhhhhhhhhhhcccccceeeccc
Q 013912 303 DELNTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIFGKP 361 (434)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~hgql~~~~ 361 (434)
.+.++.++..+. ..+.++.. ++.||.+.||||-...
T Consensus 338 -~v~~v~~G~~hs---------------------~alt~~G~-v~~wG~n~~gqLG~g~ 373 (413)
T 1a12_A 338 -AVSSVACGASVG---------------------YAVTKDGR-VFAWGMGTNYQLGTGQ 373 (413)
T ss_dssp -SEEEEEECSSEE---------------------EEEETTSC-EEEEECCTTSTTCSSS
T ss_pred -ceeEEEECcceE---------------------EEEeCCCC-EEEecCCCCCCCCCCC
Confidence 222233332211 12333444 5599999999996543
No 6
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=1.6e-47 Score=387.97 Aligned_cols=257 Identities=30% Similarity=0.476 Sum_probs=216.9
Q ss_pred CCeEEEEecCCeEEEEecCCcEEEecC--CCCCCCCCCCCccccccccceeeccCCCCcEEEEEecCCeEEEEEcCCCcc
Q 013912 2 SQICSVKAGGMMSLAIDNAGALWMWGN--CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETY 79 (434)
Q Consensus 2 ~kI~~Va~G~~h~~alt~~G~vy~wG~--n~~G~qlg~g~~~~~~~~~p~~v~~~~~~~I~~Vs~G~~hs~~lt~~G~vy 79 (434)
.+|++|+||..|++||+++|+||+||. |.+| |+|.+... .....|.++ +...+|++|+||.+|+++|+++|+
T Consensus 111 ~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~G-qlG~~~~~-~~~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~-- 184 (413)
T 1a12_A 111 EKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNG-VIGLLEPM-KKSMVPVQV--QLDVPVVKVASGNDHLVMLTADGD-- 184 (413)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEECEEETTE-EEESSBBT-BCEEEEEEE--CCSSCEEEEEECSSEEEEEETTSC--
T ss_pred CcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCC-ccCcCCcc-ccccCCEEe--cCCCCEEEEEecCceEEEEcCCCC--
Confidence 479999999999999999999999999 8888 99887532 223456666 445689999999999999999996
Q ss_pred cCCCceEEEeeCCCCCcCCCCCCC-----------CeecceeeeccCC--CCCCcEEEEeecCceEEEEEccCCCCCcCC
Q 013912 80 KGEDLVCYSWGANNNGQLGLGDRE-----------SRLRPKIIETFNQ--DSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146 (434)
Q Consensus 80 ~~~~~~vy~wG~N~~GQLG~g~~~-----------~~~~P~~v~~~~~--~~~~~I~~Is~G~~ht~~Lt~~G~~~~~~~ 146 (434)
||+||.|.+||||.+... ....|+.+..... ....+|++|+||.+|+++|+++|+
T Consensus 185 ------v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~------ 252 (413)
T 1a12_A 185 ------LYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGH------ 252 (413)
T ss_dssp ------EEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCC------
T ss_pred ------EEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCC------
Confidence 999999999999997542 1246766654321 022479999999999999999999
Q ss_pred CeEEEeecCCCCCCCCCCCCCccccEEeeeCCC-cceEEEEEecCceEEEEecCCcEEEEeCCC--CCCCCCCCCCCCCC
Q 013912 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ-YVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNE 223 (434)
Q Consensus 147 ~~vy~wG~n~~GqLG~g~~~~~~~p~~v~~l~~-~~~I~~I~~G~~hs~alt~dG~Vy~wG~n~--~lG~~~~~~~~~~~ 223 (434)
||+||.|.+||||.+.......|+++..+.. ..+|++|+||.+|+++|+++|+||+||.|. |||.+. .
T Consensus 253 --v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~-------~ 323 (413)
T 1a12_A 253 --VYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGE-------G 323 (413)
T ss_dssp --EEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCT-------T
T ss_pred --EEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCC-------C
Confidence 9999999999999999888899999987753 256999999999999999999999999998 555431 2
Q ss_pred CCCceeeEEeeCCCCCCCCCCCcEEEEecCceeEEEEcCCCeEEEEeCCCCCCCCCCCCCCeeccEEecC
Q 013912 224 AGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLW 293 (434)
Q Consensus 224 ~~~~~~P~~i~~~~~~~~~~~~i~~I~~G~~hs~~lt~dG~~vy~wG~n~~GqLG~g~~~~~~~P~~V~~ 293 (434)
......|++|.. ..+|++|+||..|+++|+++| +||+||.|.+||||+++..+...|++|..
T Consensus 324 ~~~~~~P~~v~~-------l~~v~~v~~G~~hs~alt~~G-~v~~wG~n~~gqLG~g~~~~~~~P~~v~~ 385 (413)
T 1a12_A 324 AEEKSIPTLISR-------LPAVSSVACGASVGYAVTKDG-RVFAWGMGTNYQLGTGQDEDAWSPVEMMG 385 (413)
T ss_dssp CCCEEEEEECCS-------SSSEEEEEECSSEEEEEETTS-CEEEEECCTTSTTCSSSCSCEEEEEECCS
T ss_pred CccccCCEEecc-------cCceeEEEECcceEEEEeCCC-CEEEecCCCCCCCCCCCCCCcccCeEccc
Confidence 235678999876 237999999999999999999 99999999999999999988999998864
No 7
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=3.4e-48 Score=394.07 Aligned_cols=304 Identities=21% Similarity=0.291 Sum_probs=237.2
Q ss_pred CCCeEEEEecCCeEEEEecCCcEEEecCCCCCCCCCCCCccccccccceeeccCCCCcEEEEEecCCeEEEEEcCCCccc
Q 013912 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYK 80 (434)
Q Consensus 1 l~kI~~Va~G~~h~~alt~~G~vy~wG~n~~G~qlg~g~~~~~~~~~p~~v~~~~~~~I~~Vs~G~~hs~~lt~~G~vy~ 80 (434)
|++|++|+||..|++||+++|+||+||.|.+| |||.+.........|.++... .+|++|+||.+|+++|+++|+
T Consensus 74 l~~v~~va~G~~h~~~l~~~G~v~~wG~n~~G-qLG~~~~~~~~~~~P~~v~~~--~~i~~va~G~~hs~al~~~G~--- 147 (423)
T 3mvd_K 74 IPDAVDISAGGMHNLVLTKSGDIYSFGCNDEG-ALGRDTSEDGSESKPDLIDLP--GKALCISAGDSHSACLLEDGR--- 147 (423)
T ss_dssp CSSEEEEEECSSEEEEEETTSCEEEEECCSSS-TTCSCCCSTTSSSSCEECCCS--SCEEEEEECSSEEEEEETTSC---
T ss_pred CCCceEEeeCCCeEEEEeCCCeEEEeECCCCc-CCCCCCcCCccccCCeEEcCC--CCEEEEEcCcCeEEEEeCCCe---
Confidence 46899999999999999999999999999999 999998766667788888743 379999999999999999996
Q ss_pred CCCceEEEeeC--CCCCcCCCCCCCCeecceeeeccCCCCCCcEEEEeecCceEEEEEccCCCCCcCCCeEEEeecCCCC
Q 013912 81 GEDLVCYSWGA--NNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENG 158 (434)
Q Consensus 81 ~~~~~vy~wG~--N~~GQLG~g~~~~~~~P~~v~~~~~~~~~~I~~Is~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~~G 158 (434)
||+||. |.+||||.+.......|..+. . ..+|++|+||.+|+++|+++|+ ||+||.|.+|
T Consensus 148 -----v~~wG~~~n~~GqlG~~~~~~~~~p~~~~--~---~~~i~~va~G~~hs~alt~~G~--------v~~wG~n~~G 209 (423)
T 3mvd_K 148 -----VFAWGSFRDSHGNMGLTIDGNKRTPIDLM--E---GTVCCSIASGADHLVILTTAGK--------VFTVGCAEQG 209 (423)
T ss_dssp -----EEEEECEECSSSEEESBTTBCEEEEEESS--T---TCCEEEEEECSSEEEEEETTSC--------EEEEECCTTS
T ss_pred -----EEEEeCCCCCCCCcCcCCCCCCceeeEec--C---CCcEEEEecCCCeEEEEecCCe--------EEEeeCCcCC
Confidence 999999 999999999888877776653 2 2379999999999999999999 9999999999
Q ss_pred CCCCCCCC-----------CccccEEeeeCCCcceEEEEEecCceEEEE-ecCCcEEEEeCCCCCCCCCCCCCCCCCCCC
Q 013912 159 QLGHGTTQ-----------SALVPEQVKELPQYVYLVSVDCGLFHTSVV-SSAGDVWSWGMEKGLGLCPNASLTRNEAGD 226 (434)
Q Consensus 159 qLG~g~~~-----------~~~~p~~v~~l~~~~~I~~I~~G~~hs~al-t~dG~Vy~wG~n~~lG~~~~~~~~~~~~~~ 226 (434)
|||.+... ....|.++... ...+|++|+||.+|++++ +++|+||+||.|. +|++... ......
T Consensus 210 qLG~~~~~~~~~~~~~~~~~~~~p~~v~~~-~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~-~gqlg~~---~~~~~~ 284 (423)
T 3mvd_K 210 QLGRLSERSISGEGRRGKRDLLRPTQLIIT-RAKPFEAIWATNYCTFMRESQTQVIWATGLNN-FKQLAHE---TKGKEF 284 (423)
T ss_dssp TTSSCCTTTTTSCSTTTTTTTSSCEEECCT-TCCCEEEEEEETTEEEEEETTTCCEEEEEECT-TCTTSSC---CTTCSE
T ss_pred ccCCCcccccccccccccccccCCeEEeec-CCccEEEEEECCcEEEEEECCCCeEEEEeCCC-CCcCCCC---CCCCce
Confidence 99997652 34578888644 556899999999999999 6999999999998 3333221 112234
Q ss_pred ceeeEEeeCCCCCCCCCCCcEEEEecCceeEEEEcCCCeEEEEeCCCCCCCCCCCCCC-eeccEEecCCcchhhhccccc
Q 013912 227 AISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID-FFAPAIVLWPPLTEEFKQDEL 305 (434)
Q Consensus 227 ~~~P~~i~~~~~~~~~~~~i~~I~~G~~hs~~lt~dG~~vy~wG~n~~GqLG~g~~~~-~~~P~~V~~p~~~~~f~~~~~ 305 (434)
...|+.+. ..+|++|+||..|+++|+++| +||+||+|.+||||+++..+ ...|++|..+ .. .+
T Consensus 285 ~~~p~~~~--------~~~v~~ia~G~~ht~alt~~G-~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l--~~-----~v 348 (423)
T 3mvd_K 285 ALTPIKTE--------LKDIRHIAGGQHHTVILTTDL-KCSVVGRPEYGRLGLGDVKDVVEKPTIVKKL--TE-----KI 348 (423)
T ss_dssp EEEEEEEC--------CCSEEEEEECSSEEEEEETTC-CEEEEECCGGGTTCSSSCCSCEEEEEECTTC--CS-----CE
T ss_pred eeeeEEcC--------CCCeEEEEcccCeEEEEeCCC-cEEEEECCCCCCCCCCCccccccCceEeccC--CC-----CE
Confidence 55677664 246999999999999999999 99999999999999998765 5678777432 11 12
Q ss_pred cccCCCcccccccccchhhhhhhhhhHHHHHHHHhhhhhhhhhhcccccceeeccccCccCCccccc
Q 013912 306 NTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIFGKPFAAEQDIPISL 372 (434)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~hgql~~~~~~~~~~~~~~l 372 (434)
.++.++. .+...+.++.. ++.||.+.||||-.... .....|..+
T Consensus 349 ~~ia~G~---------------------~hs~alt~~G~-v~~wG~n~~GqLG~g~~-~~~~~P~~v 392 (423)
T 3mvd_K 349 VSVGCGE---------------------VCSYAVTIDGK-LYSWGSGVNNQLGVGDG-DDELEPIVV 392 (423)
T ss_dssp EEEEEET---------------------TEEEEEETTSC-EEEEECCTTSCSSSSSS-CCEEEEEEC
T ss_pred EEEEcCC---------------------CeEEEEcCCCC-EEEECCCCCCCCCCCCC-CCcccCeEE
Confidence 2222222 11113334444 55999999999965433 223344443
No 8
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-47 Score=394.99 Aligned_cols=278 Identities=23% Similarity=0.346 Sum_probs=224.9
Q ss_pred CCeEEEEecCCeEEEEecCCcEEEecC--CCCCCCCCCCCccccccccceeeccCCCCcEEEEEecCCeEEEEEcCCCcc
Q 013912 2 SQICSVKAGGMMSLAIDNAGALWMWGN--CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETY 79 (434)
Q Consensus 2 ~kI~~Va~G~~h~~alt~~G~vy~wG~--n~~G~qlg~g~~~~~~~~~p~~v~~~~~~~I~~Vs~G~~hs~~lt~~G~vy 79 (434)
.+|++|+||..|++||+++|+||+||. +..| |||.+.........|.+++.+.+.+|++|+||.+|+++|+++|+
T Consensus 148 ~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~G-qLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~-- 224 (473)
T 3of7_A 148 HKVVQLAATDNMSCALFSNGEVYAWGTFRCNEG-ILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGM-- 224 (473)
T ss_dssp CCEEEEEECSSEEEEEETTSCEEEEECEEETTE-EEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSC--
T ss_pred CcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCC-ccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCe--
Confidence 479999999999999999999999998 5677 88886656667788999999988899999999999999999996
Q ss_pred cCCCceEEEeeCCCCCcCCCCCCCC----eecceeeeccCCCCCCcEEEEeecCceEEEEEccCCCCCcCCCeEEEeecC
Q 013912 80 KGEDLVCYSWGANNNGQLGLGDRES----RLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLG 155 (434)
Q Consensus 80 ~~~~~~vy~wG~N~~GQLG~g~~~~----~~~P~~v~~~~~~~~~~I~~Is~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n 155 (434)
||+||.|.+||||.+.... ...|..+.. .+|++|+||.+|+++|+++|+ ||+||.|
T Consensus 225 ------v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~------~~v~~Ia~G~~hs~alt~~G~--------v~~wG~n 284 (473)
T 3of7_A 225 ------VFAWGNGQQNQLGRKVMERFRLKTLDPRPFGL------RHVKYIASGENHCFALTKDNK--------LVSWGLN 284 (473)
T ss_dssp ------EEEEECCTTSTTSSCCCGGGTTTTCSCEECSC------CSEEEEEECSSEEEEEETTSC--------EEEEEEC
T ss_pred ------EEEEeCCCCCCCCCCccccccccccCceecCC------cceEEEecCCCeEEEEecCCC--------EEEeCCC
Confidence 9999999999999987654 345666532 279999999999999999999 9999999
Q ss_pred CCCCCCCCCCC----CccccEEeeeCCCcceEEEEEecCceEEEEecCCcEEEEeCCC--CCCCCCCCCCC------CCC
Q 013912 156 ENGQLGHGTTQ----SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLT------RNE 223 (434)
Q Consensus 156 ~~GqLG~g~~~----~~~~p~~v~~l~~~~~I~~I~~G~~hs~alt~dG~Vy~wG~n~--~lG~~~~~~~~------~~~ 223 (434)
.+||||.+... ....|+++..+ ...+|++|+||.+|++||+++|+||+||.|. |||++...... ...
T Consensus 285 ~~GqlG~~~~~~~~~~~~~P~~v~~~-~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~ 363 (473)
T 3of7_A 285 QFGQCGVSEDVEDGALVTKPKRLALP-DNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGK 363 (473)
T ss_dssp TTSTTCCCSCCCTTCEEEEEEECCCC-TTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSC
T ss_pred CCCCcCCCCcccCCceeecccccccc-CCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCc
Confidence 99999998764 34678888755 4578999999999999999999999999998 45543211000 011
Q ss_pred CCCceeeEEeeCCCCCCCCCCCcEEEEecCceeEEEEcCCCeEEEEeCCCCCCCCCCC-CCCeeccEEecCCcchhhhcc
Q 013912 224 AGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK-TIDFFAPAIVLWPPLTEEFKQ 302 (434)
Q Consensus 224 ~~~~~~P~~i~~~~~~~~~~~~i~~I~~G~~hs~~lt~dG~~vy~wG~n~~GqLG~g~-~~~~~~P~~V~~p~~~~~f~~ 302 (434)
......|+.+.. ..+|++|+||.+|++||+++| +||+||.|.+||||+++ ..+...|++|..+.+. .
T Consensus 364 ~~~~~~P~~v~~-------~~~v~~Ia~G~~hs~al~~~G-~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~~----~ 431 (473)
T 3of7_A 364 ARAVPLPTKLNN-------VPKFKSVAAGSHHSVAVAQNG-IAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQ----D 431 (473)
T ss_dssp EEEEEEEEECCS-------SCCEEEEEECSSEEEEEETTS-CEEEEECCTTCTTCCCSCCSCEEEEEECCCTTTT----T
T ss_pred eeeeccCcccCC-------CCceEEEEeCCCeEEEEeCCC-cEEEeeCCCCCCCCCCCCCccccCCeEecccccC----C
Confidence 122356777754 337999999999999999999 99999999999999999 7789999999744222 2
Q ss_pred ccccccCCCcccc
Q 013912 303 DELNTGGLDDEIK 315 (434)
Q Consensus 303 ~~~~~~~~~~~~~ 315 (434)
..+..+.|+..+.
T Consensus 432 ~~v~~v~cG~~~s 444 (473)
T 3of7_A 432 HNIILVGCGGQFS 444 (473)
T ss_dssp EEEEEEEECSSEE
T ss_pred CeEEEEeeCCCeE
Confidence 2333445554444
No 9
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-47 Score=393.29 Aligned_cols=248 Identities=26% Similarity=0.453 Sum_probs=203.4
Q ss_pred CCeEEEEecCCeEEEEecCCcEEEecCCCCCCCCCCCCcccc---------------------ccccceeecc--C----
Q 013912 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV---------------------SSFTPSPVWD--F---- 54 (434)
Q Consensus 2 ~kI~~Va~G~~h~~alt~~G~vy~wG~n~~G~qlg~g~~~~~---------------------~~~~p~~v~~--~---- 54 (434)
.+|++|+||..|++||+++|+||+||.|.+| |||.+..... ....|.+++. +
T Consensus 67 ~~i~~va~G~~Ht~alt~~G~v~~wG~n~~G-qLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~ 145 (473)
T 3of7_A 67 AKIISFAVGGMHTLALDEESNVWSWGCNDVG-ALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLA 145 (473)
T ss_dssp TCEEEEEECSSEEEEEETTCCEEEEECCTTS-TTCSCCC---------------------CCHHHHSCEECCGGGCHHHH
T ss_pred CCEEEEEeCCCeEEEEecCCeEEEeECCCCC-CCCCCCcccccccccccccccCccccccccccccCceecccccCCccc
Confidence 3799999999999999999999999999999 9998864431 1557777765 5
Q ss_pred CCCcEEEEEecCCeEEEEEcCCCcccCCCceEEEeeC--CCCCcCCCCCCC--CeecceeeeccCCCCCCcEEEEeecCc
Q 013912 55 HGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGA--NNNGQLGLGDRE--SRLRPKIIETFNQDSPWAVYEVTCGSF 130 (434)
Q Consensus 55 ~~~~I~~Vs~G~~hs~~lt~~G~vy~~~~~~vy~wG~--N~~GQLG~g~~~--~~~~P~~v~~~~~~~~~~I~~Is~G~~ 130 (434)
.+.+|++|+||.+|++||+++|+ ||+||. |.+||||.+... ....|.+++.+.. .+|++|+||.+
T Consensus 146 ~~~~i~~va~G~~hs~alt~~G~--------vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~---~~i~~va~G~~ 214 (473)
T 3of7_A 146 EGHKVVQLAATDNMSCALFSNGE--------VYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSK---YNIVQLAPGKD 214 (473)
T ss_dssp TTCCEEEEEECSSEEEEEETTSC--------EEEEECEEETTEEEESBTTTBSCEEEEEECCCCCS---SCEEEEEECSS
T ss_pred CCCcEEEEEccCCEEEEEeCCCe--------EEEeeCCcCCCCccCCCCCCCccccCcEEccccCC---CCEEEEEecCC
Confidence 36799999999999999999996 999998 689999986543 5677888876653 37999999999
Q ss_pred eEEEEEccCCCCCcCCCeEEEeecCCCCCCCCCCCCC----ccccEEeeeCCCcceEEEEEecCceEEEEecCCcEEEEe
Q 013912 131 HTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS----ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206 (434)
Q Consensus 131 ht~~Lt~~G~~~~~~~~~vy~wG~n~~GqLG~g~~~~----~~~p~~v~~l~~~~~I~~I~~G~~hs~alt~dG~Vy~wG 206 (434)
|+++|+++|+ ||+||.|.+||||.+.... ...|.++.. .+|++|+||.+|++||+++|+||+||
T Consensus 215 hs~alt~~G~--------v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~----~~v~~Ia~G~~hs~alt~~G~v~~wG 282 (473)
T 3of7_A 215 HILFLDEEGM--------VFAWGNGQQNQLGRKVMERFRLKTLDPRPFGL----RHVKYIASGENHCFALTKDNKLVSWG 282 (473)
T ss_dssp EEEEEETTSC--------EEEEECCTTSTTSSCCCGGGTTTTCSCEECSC----CSEEEEEECSSEEEEEETTSCEEEEE
T ss_pred eEEEEeCCCe--------EEEEeCCCCCCCCCCccccccccccCceecCC----cceEEEecCCCeEEEEecCCCEEEeC
Confidence 9999999999 9999999999999986543 456666632 46999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCceeeEEeeCCCCCCCCCCCcEEEEecCceeEEEEcCCCeEEEEeCCCCCCCCCCC
Q 013912 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281 (434)
Q Consensus 207 ~n~~lG~~~~~~~~~~~~~~~~~P~~i~~~~~~~~~~~~i~~I~~G~~hs~~lt~dG~~vy~wG~n~~GqLG~g~ 281 (434)
.|. +|+++..... ........|++|.. ....+|++|+||.+|+++|+++| +||+||.|.+||||.+.
T Consensus 283 ~n~-~GqlG~~~~~-~~~~~~~~P~~v~~-----~~~~~i~~ia~G~~hs~~lt~~G-~v~~wG~n~~GqLG~~~ 349 (473)
T 3of7_A 283 LNQ-FGQCGVSEDV-EDGALVTKPKRLAL-----PDNVVIRSIAAGEHHSLILSQDG-DLYSCGRLDMFEVGIPK 349 (473)
T ss_dssp ECT-TSTTCCCSCC-CTTCEEEEEEECCC-----CTTCCEEEEEECSSEEEEEETTS-CEEEEEECTTCTTCCCG
T ss_pred CCC-CCCcCCCCcc-cCCceeeccccccc-----cCCccEEEEEeCCCeEEEEeCCC-eEEEEECCCCCccCCCc
Confidence 997 3333222211 11124567888875 23356999999999999999999 99999999999999875
No 10
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=1.7e-45 Score=374.26 Aligned_cols=251 Identities=25% Similarity=0.370 Sum_probs=208.9
Q ss_pred CCeEEEEecCCeEEEEecCCcEEEecC--CCCCCCCCCCCccccccccceeeccCCCCcEEEEEecCCeEEEEEcCCCcc
Q 013912 2 SQICSVKAGGMMSLAIDNAGALWMWGN--CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETY 79 (434)
Q Consensus 2 ~kI~~Va~G~~h~~alt~~G~vy~wG~--n~~G~qlg~g~~~~~~~~~p~~v~~~~~~~I~~Vs~G~~hs~~lt~~G~vy 79 (434)
.+|++|+||..|++||+++|+||+||. |.+| |||.+.... . |.++..+.+.+|++|+||.+|+++|+++|+
T Consensus 127 ~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~G-qlG~~~~~~--~--~~p~~~~~~~~i~~va~G~~hs~alt~~G~-- 199 (423)
T 3mvd_K 127 GKALCISAGDSHSACLLEDGRVFAWGSFRDSHG-NMGLTIDGN--K--RTPIDLMEGTVCCSIASGADHLVILTTAGK-- 199 (423)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEECEECSSS-EEESBTTBC--E--EEEEESSTTCCEEEEEECSSEEEEEETTSC--
T ss_pred CCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCC-CcCcCCCCC--C--ceeeEecCCCcEEEEecCCCeEEEEecCCe--
Confidence 489999999999999999999999999 9998 998875332 2 444455667799999999999999999996
Q ss_pred cCCCceEEEeeCCCCCcCCCCCCC-----------CeecceeeeccCCCCCCcEEEEeecCceEEEE-EccCCCCCcCCC
Q 013912 80 KGEDLVCYSWGANNNGQLGLGDRE-----------SRLRPKIIETFNQDSPWAVYEVTCGSFHTALL-THRKRPNDMLES 147 (434)
Q Consensus 80 ~~~~~~vy~wG~N~~GQLG~g~~~-----------~~~~P~~v~~~~~~~~~~I~~Is~G~~ht~~L-t~~G~~~~~~~~ 147 (434)
||+||.|.+||||.+... ....|+.+..... .+|++|+||.+|++++ +++|+
T Consensus 200 ------v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~---~~v~~i~~g~~~~~~~~~~~g~------- 263 (423)
T 3mvd_K 200 ------VFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRA---KPFEAIWATNYCTFMRESQTQV------- 263 (423)
T ss_dssp ------EEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTC---CCEEEEEEETTEEEEEETTTCC-------
T ss_pred ------EEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCC---ccEEEEEECCcEEEEEECCCCe-------
Confidence 999999999999998653 3457888875443 3799999999999999 58888
Q ss_pred eEEEeecCCCCCCCCCCCCC--ccccEEeeeCCCcceEEEEEecCceEEEEecCCcEEEEeCCC--CCCCCCCCCCCCCC
Q 013912 148 MCWTFGLGENGQLGHGTTQS--ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNE 223 (434)
Q Consensus 148 ~vy~wG~n~~GqLG~g~~~~--~~~p~~v~~l~~~~~I~~I~~G~~hs~alt~dG~Vy~wG~n~--~lG~~~~~~~~~~~ 223 (434)
||+||.|.+||||.+.... ...|.++. ..+|++|+||.+|+++|+++|+||+||.|. |||.+. .
T Consensus 264 -v~~wG~n~~gqlg~~~~~~~~~~~p~~~~----~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~-------~ 331 (423)
T 3mvd_K 264 -IWATGLNNFKQLAHETKGKEFALTPIKTE----LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGD-------V 331 (423)
T ss_dssp -EEEEEECTTCTTSSCCTTCSEEEEEEEEC----CCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSS-------C
T ss_pred -EEEEeCCCCCcCCCCCCCCceeeeeEEcC----CCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCC-------c
Confidence 9999999999999965543 34555543 346999999999999999999999999998 455421 2
Q ss_pred CCCceeeEEeeCCCCCCCCCCCcEEEEecCceeEEEEcCCCeEEEEeCCCCCCCCCCCCCCeeccEEecCC
Q 013912 224 AGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294 (434)
Q Consensus 224 ~~~~~~P~~i~~~~~~~~~~~~i~~I~~G~~hs~~lt~dG~~vy~wG~n~~GqLG~g~~~~~~~P~~V~~p 294 (434)
......|+.+..+ .. +|++|+||.+|+++|+++| +||+||.|.+||||+++..+...|++|..+
T Consensus 332 ~~~~~~p~~v~~l-----~~-~v~~ia~G~~hs~alt~~G-~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~ 395 (423)
T 3mvd_K 332 KDVVEKPTIVKKL-----TE-KIVSVGCGEVCSYAVTIDG-KLYSWGSGVNNQLGVGDGDDELEPIVVVSK 395 (423)
T ss_dssp CSCEEEEEECTTC-----CS-CEEEEEEETTEEEEEETTS-CEEEEECCTTSCSSSSSSCCEEEEEECCST
T ss_pred cccccCceEeccC-----CC-CEEEEEcCCCeEEEEcCCC-CEEEECCCCCCCCCCCCCCCcccCeEEeCc
Confidence 2235678888652 11 6999999999999999999 999999999999999999999999999743
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=1.4e-39 Score=313.12 Aligned_cols=192 Identities=25% Similarity=0.411 Sum_probs=161.0
Q ss_pred CCCeEEEEecCCeEEEEecCCcEEEecCCCCCCCCCCCCccccccccceeeccCCCCcEEEEEecCCeEEEEEcCCCccc
Q 013912 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYK 80 (434)
Q Consensus 1 l~kI~~Va~G~~h~~alt~~G~vy~wG~n~~G~qlg~g~~~~~~~~~p~~v~~~~~~~I~~Vs~G~~hs~~lt~~G~vy~ 80 (434)
+++|++|+||..|+++|+ +|+||+||.|.+| |||. |... ..+|++|+||.+|+++|+ +|+
T Consensus 23 ~~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~G-qlg~----------p~~~----~~~i~~ia~G~~hs~~l~-~G~--- 82 (282)
T 3qhy_B 23 QSGVDAIAGGYFHGLALK-GGKVLGWGANLNG-QLTM----------PAAT----QSGVDAIAAGNYHSLALK-DGE--- 82 (282)
T ss_dssp SSSCCEEEECSSEEEEEE-TTEEEEEECCSSS-TTSC----------CGGG----GSCCCEEEECSSEEEEEE-TTE---
T ss_pred cCCCcEEEeCCCeEEEEE-CCEEEEEeCCCCC-CCCC----------CccC----CCCEEEEEeCCCEEEEEE-CCE---
Confidence 468999999999999998 9999999999998 8874 2221 137999999999999996 895
Q ss_pred CCCceEEEeeCCCCCcCCCCCCCCeecceeeeccCCCCCCcEEEEeecCceEEEEEccCCCCCcCCCeEEEeecCCCCCC
Q 013912 81 GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQL 160 (434)
Q Consensus 81 ~~~~~vy~wG~N~~GQLG~g~~~~~~~P~~v~~~~~~~~~~I~~Is~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~~GqL 160 (434)
||+||.|.+||||+ |..+. .+|++|+||.+|+++|+ +|+ ||+||.|.+|||
T Consensus 83 -----v~~wG~n~~Gqlg~--------P~~~~-------~~v~~ia~G~~hs~al~-~G~--------v~~wG~n~~gql 133 (282)
T 3qhy_B 83 -----VIAWGGNEDGQTTV--------PAEAR-------SGVDAIAAGAWASYALK-DGK--------VIAWGDDSDGQT 133 (282)
T ss_dssp -----EEEEECCTTSTTCC--------CGGGS-------SSEEEEEEETTEEEEEE-TTE--------EEEEECCTTSTT
T ss_pred -----EEEeeCCCCCCCCC--------CcccC-------CCeEEEECcCCEEEEEe-CCe--------EEEecCCCCCcC
Confidence 99999999999995 44332 26999999999999999 999 999999999999
Q ss_pred CCCCCCCccccEEeeeCCCcceEEEEEecCceEEEEecCCcEEEEeCCCCCCCCCCCCCCCCCCCCceeeEEeeCCCCCC
Q 013912 161 GHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240 (434)
Q Consensus 161 G~g~~~~~~~p~~v~~l~~~~~I~~I~~G~~hs~alt~dG~Vy~wG~n~~lG~~~~~~~~~~~~~~~~~P~~i~~~~~~~ 240 (434)
|... + ...+|++|+||.+|+++++ +|+||+||.|. +|+.. .|..+
T Consensus 134 g~~~--------~-----~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~-~gqlg-------------~p~~~------- 178 (282)
T 3qhy_B 134 TVPA--------E-----AQSGVTALDGGVYTALAVK-NGGVIAWGDNY-FGQTT-------------VPAEA------- 178 (282)
T ss_dssp SCCG--------G-----GGSSEEEEEECSSEEEEEE-TTEEEEEECCT-TSTTS-------------CCGGG-------
T ss_pred CCCc--------c-----CCCCeEEEEcccCEEEEEE-CCEEEEecCCC-CCCCC-------------Cceec-------
Confidence 8421 1 1245999999999999999 89999999997 44321 12222
Q ss_pred CCCCCcEEEEecCceeEEEEcCCCeEEEEeCCCCCCCCCC
Q 013912 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280 (434)
Q Consensus 241 ~~~~~i~~I~~G~~hs~~lt~dG~~vy~wG~n~~GqLG~g 280 (434)
..+|++|+||.+|+++| ++| +||+||.|.+||||.+
T Consensus 179 --~~~v~~i~~G~~hs~al-~~G-~v~~wG~n~~gqlg~p 214 (282)
T 3qhy_B 179 --QSGVDDVAGGIFHSLAL-KDG-KVIAWGDNRYKQTTVP 214 (282)
T ss_dssp --GSSEEEEEECSSEEEEE-ETT-EEEEEECCTTSTTCCC
T ss_pred --CCCeEEEEecCCEEEEE-ECC-eEEEEECCCCCCCCCC
Confidence 23689999999999999 899 9999999999999964
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=2.6e-38 Score=304.17 Aligned_cols=191 Identities=23% Similarity=0.371 Sum_probs=159.3
Q ss_pred CCeEEEEecCCeEEEEecCCcEEEecCCCCCCCCCCCCccccccccceeeccCCCCcEEEEEecCCeEEEEEcCCCcccC
Q 013912 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKG 81 (434)
Q Consensus 2 ~kI~~Va~G~~h~~alt~~G~vy~wG~n~~G~qlg~g~~~~~~~~~p~~v~~~~~~~I~~Vs~G~~hs~~lt~~G~vy~~ 81 (434)
++|++|+||..|+++|+ +|+||+||.|.+| |+|. |..+. .+|++|+||.+|+++|+ +|+
T Consensus 63 ~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~G-qlg~----------P~~~~----~~v~~ia~G~~hs~al~-~G~---- 121 (282)
T 3qhy_B 63 SGVDAIAAGNYHSLALK-DGEVIAWGGNEDG-QTTV----------PAEAR----SGVDAIAAGAWASYALK-DGK---- 121 (282)
T ss_dssp SCCCEEEECSSEEEEEE-TTEEEEEECCTTS-TTCC----------CGGGS----SSEEEEEEETTEEEEEE-TTE----
T ss_pred CCEEEEEeCCCEEEEEE-CCEEEEeeCCCCC-CCCC----------CcccC----CCeEEEECcCCEEEEEe-CCe----
Confidence 58999999999999996 9999999999998 8874 33332 37999999999999999 995
Q ss_pred CCceEEEeeCCCCCcCCCCCCCCeecceeeeccCCCCCCcEEEEeecCceEEEEEccCCCCCcCCCeEEEeecCCCCCCC
Q 013912 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161 (434)
Q Consensus 82 ~~~~vy~wG~N~~GQLG~g~~~~~~~P~~v~~~~~~~~~~I~~Is~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~~GqLG 161 (434)
||+||.|.+||||.. .. .. .+|++|+||.+|+++|+ +|+ ||+||.|.+||||
T Consensus 122 ----v~~wG~n~~gqlg~~--------~~--~~-----~~i~~i~~G~~~~~~l~-~G~--------v~~wG~n~~gqlg 173 (282)
T 3qhy_B 122 ----VIAWGDDSDGQTTVP--------AE--AQ-----SGVTALDGGVYTALAVK-NGG--------VIAWGDNYFGQTT 173 (282)
T ss_dssp ----EEEEECCTTSTTSCC--------GG--GG-----SSEEEEEECSSEEEEEE-TTE--------EEEEECCTTSTTS
T ss_pred ----EEEecCCCCCcCCCC--------cc--CC-----CCeEEEEcccCEEEEEE-CCE--------EEEecCCCCCCCC
Confidence 999999999999842 11 11 26999999999999999 798 9999999999998
Q ss_pred CCCCCCccccEEeeeCCCcceEEEEEecCceEEEEecCCcEEEEeCCCCCCCCCCCCCCCCCCCCceeeEEeeCCCCCCC
Q 013912 162 HGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241 (434)
Q Consensus 162 ~g~~~~~~~p~~v~~l~~~~~I~~I~~G~~hs~alt~dG~Vy~wG~n~~lG~~~~~~~~~~~~~~~~~P~~i~~~~~~~~ 241 (434)
. |.++ ..+|++|+||.+|+++| ++|+||+||.|. +|+++. |...
T Consensus 174 ~--------p~~~-----~~~v~~i~~G~~hs~al-~~G~v~~wG~n~-~gqlg~-------------p~~~-------- 217 (282)
T 3qhy_B 174 V--------PAEA-----QSGVDDVAGGIFHSLAL-KDGKVIAWGDNR-YKQTTV-------------PTEA-------- 217 (282)
T ss_dssp C--------CGGG-----GSSEEEEEECSSEEEEE-ETTEEEEEECCT-TSTTCC-------------CGGG--------
T ss_pred C--------ceec-----CCCeEEEEecCCEEEEE-ECCeEEEEECCC-CCCCCC-------------Cccc--------
Confidence 3 2222 24699999999999999 899999999998 333211 1111
Q ss_pred CCCCcEEEEecCceeEEEEcCCCeEEEEeCCCCCCCCCC
Q 013912 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280 (434)
Q Consensus 242 ~~~~i~~I~~G~~hs~~lt~dG~~vy~wG~n~~GqLG~g 280 (434)
..+|++|+||..|+++++ +| +||+||+|+++|++..
T Consensus 218 -~~~v~~i~~G~~h~~al~-~g-~v~~wG~n~~gq~~v~ 253 (282)
T 3qhy_B 218 -LSGVSAIASGEWYSLALK-NG-KVIAWGSSRTAPSSVQ 253 (282)
T ss_dssp -GSSCCEEEECSSCEEEEE-TT-EEEEESTTCCCCGGGS
T ss_pred -CCCceEEEcCCCEEEEEE-CC-EEEEecCCCCccccCC
Confidence 235889999999999999 99 9999999999999863
No 13
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.63 E-value=0.0068 Score=55.12 Aligned_cols=126 Identities=19% Similarity=0.217 Sum_probs=82.4
Q ss_pred cEEE-EEecCCeEEE-----EEcCCCcccCCCceEEEeeCCCCCcCCCCCCCCeecceeeeccCCC-----CCCcEEEEe
Q 013912 58 TVVK-VACGSEHVVA-----LVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD-----SPWAVYEVT 126 (434)
Q Consensus 58 ~I~~-Vs~G~~hs~~-----lt~~G~vy~~~~~~vy~wG~N~~GQLG~g~~~~~~~P~~v~~~~~~-----~~~~I~~Is 126 (434)
+|.+ |..|.+|.++ |+..+ -|+.+..+|+..--|..|.. ...++..|.-+...... ....|..|+
T Consensus 240 ~V~D~~rIg~n~iv~~~~~~iv~t~-~~Ta~~~kv~V~~In~ggni---TltdV~~t~~v~nh~tg~~~~ansn~i~~Vs 315 (400)
T 4gbf_A 240 HVIDSMSIGCTHIIMHSIDPLVAPE-DYTSESSKVHVMEIIRNGND---TSFMVISPLWFDGRGNDVTANVNSNPIGGVS 315 (400)
T ss_dssp CEEEEEEECSSEEEEEEECTTSCGG-GCCTTTEEEEEEEEEEETTE---EEEEEECCCCBCTTSCBCHHHHHTSCCCCCB
T ss_pred eeeeeEEecccEEEEecccceeccC-CCcceeeEEEEEEEecCCce---EEEEeeceeEEecCCCCeEEEecCCcccccc
Confidence 4666 9999999987 32221 12333445555443332221 11223333333221110 012578899
Q ss_pred ecCceEEEEEccCCCCCcCCCeEEEeecCCCCCCCCCCCCCccccEEeeeCCCcceEEEEEecCceEEEEecCCcEEEEe
Q 013912 127 CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206 (434)
Q Consensus 127 ~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~~I~~I~~G~~hs~alt~dG~Vy~wG 206 (434)
--+.|++++--+++ +|.||++..|||-.... ..+..++.+|..+++-+..-+.|-.||
T Consensus 316 G~y~H~vvi~gd~e--------l~sFG~~sNGQ~~ip~t--------------agPfla~~AG~~fTVTVn~~nyv~FWG 373 (400)
T 4gbf_A 316 GLYTHYTVMYGDGQ--------IAFFGNNDNGQCDVDDH--------------AGPYIQLAAGHNFTVTVNTLNQVMFWG 373 (400)
T ss_dssp CSSSEEEC-CTTTC--------CCEEECCTTSTTCCCGG--------------GCCEEEEEECSSEEEEEETTCCEEEEE
T ss_pred ccccceEEEecCce--------eEEeccCCCCceecCCC--------------cchHHhHhccCCeEEEEeceeeEEEec
Confidence 99999999988888 99999999999965432 224789999999999999999999999
Q ss_pred CCC
Q 013912 207 MEK 209 (434)
Q Consensus 207 ~n~ 209 (434)
...
T Consensus 374 DSP 376 (400)
T 4gbf_A 374 DSP 376 (400)
T ss_dssp CCT
T ss_pred CCC
Confidence 865
No 14
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.62 E-value=0.0066 Score=55.21 Aligned_cols=122 Identities=12% Similarity=0.132 Sum_probs=81.7
Q ss_pred CCCeEE-EEecCCeEEE-----Ee--cC-----CcEEEecCCCCCCCCCCCCccccccccceeeccC--------CCCcE
Q 013912 1 MSQICS-VKAGGMMSLA-----ID--NA-----GALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDF--------HGHTV 59 (434)
Q Consensus 1 l~kI~~-Va~G~~h~~a-----lt--~~-----G~vy~wG~n~~G~qlg~g~~~~~~~~~p~~v~~~--------~~~~I 59 (434)
|.+|.+ |..|..|.++ |. ++ -+|+..-.|..| +........|.-+..- ....|
T Consensus 238 l~~V~D~~rIg~n~iv~~~~~~iv~t~~~Ta~~~kv~V~~In~gg------niTltdV~~t~~v~nh~tg~~~~ansn~i 311 (400)
T 4gbf_A 238 LNHVIDSMSIGCTHIIMHSIDPLVAPEDYTSESSKVHVMEIIRNG------NDTSFMVISPLWFDGRGNDVTANVNSNPI 311 (400)
T ss_dssp GTCEEEEEEECSSEEEEEEECTTSCGGGCCTTTEEEEEEEEEEET------TEEEEEEECCCCBCTTSCBCHHHHHTSCC
T ss_pred cceeeeeEEecccEEEEecccceeccCCCcceeeEEEEEEEecCC------ceEEEEeeceeEEecCCCCeEEEecCCcc
Confidence 346777 9999999986 21 11 246655444332 1122333333332211 11357
Q ss_pred EEEEecCCeEEEEEcCCCcccCCCceEEEeeCCCCCcCCCCCCCCeecceeeeccCCCCCCcEEEEeecCceEEEEEccC
Q 013912 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRK 139 (434)
Q Consensus 60 ~~Vs~G~~hs~~lt~~G~vy~~~~~~vy~wG~N~~GQLG~g~~~~~~~P~~v~~~~~~~~~~I~~Is~G~~ht~~Lt~~G 139 (434)
..|+-...|.+++.-+++ +++||+|++||+-.... . .+..++.+|.++|+-+..-.
T Consensus 312 ~~VsG~y~H~vvi~gd~e--------l~sFG~~sNGQ~~ip~t------------a----gPfla~~AG~~fTVTVn~~n 367 (400)
T 4gbf_A 312 GGVSGLYTHYTVMYGDGQ--------IAFFGNNDNGQCDVDDH------------A----GPYIQLAAGHNFTVTVNTLN 367 (400)
T ss_dssp CCCBCSSSEEEC-CTTTC--------CCEEECCTTSTTCCCGG------------G----CCEEEEEECSSEEEEEETTC
T ss_pred ccccccccceEEEecCce--------eEEeccCCCCceecCCC------------c----chHHhHhccCCeEEEEecee
Confidence 888888999999988886 88999999999864322 1 25789999999999999988
Q ss_pred CCCCcCCCeEEEeecCCCCCC
Q 013912 140 RPNDMLESMCWTFGLGENGQL 160 (434)
Q Consensus 140 ~~~~~~~~~vy~wG~n~~GqL 160 (434)
. +-.||+.-..-|
T Consensus 368 y--------v~FWGDSPDNSL 380 (400)
T 4gbf_A 368 Q--------VMFWGDSPDNSL 380 (400)
T ss_dssp C--------EEEEECCTTSTT
T ss_pred e--------EEEecCCCCcce
Confidence 8 999998765554
No 15
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=85.22 E-value=16 Score=38.49 Aligned_cols=20 Identities=5% Similarity=-0.193 Sum_probs=15.7
Q ss_pred cCceEEEEecCCcEEEEeCC
Q 013912 189 GLFHTSVVSSAGDVWSWGME 208 (434)
Q Consensus 189 G~~hs~alt~dG~Vy~wG~n 208 (434)
-..|++++..+|++|++|-.
T Consensus 597 R~~~~~~~~~~~~iyv~GG~ 616 (695)
T 2zwa_A 597 RYGSQIKYITPRKLLIVGGT 616 (695)
T ss_dssp CBSCEEEEEETTEEEEECCB
T ss_pred cccceEEEeCCCEEEEECCc
Confidence 35688888877999999853
No 16
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=72.30 E-value=65 Score=30.28 Aligned_cols=163 Identities=11% Similarity=-0.007 Sum_probs=87.8
Q ss_pred EEecCCeEEEEecCCcEEEecCCCCCCCCCCCCccccccccc--eeeccCCCCcEEEEEecC-----CeEEEEEcCCCcc
Q 013912 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTP--SPVWDFHGHTVVKVACGS-----EHVVALVSAGETY 79 (434)
Q Consensus 7 Va~G~~h~~alt~~G~vy~wG~n~~G~qlg~g~~~~~~~~~p--~~v~~~~~~~I~~Vs~G~-----~hs~~lt~~G~vy 79 (434)
.+....+.+++|+.|++|..-...-. ..+. ...-.| ..+..-++.+|+.+.+.. ...+++|++|.
T Consensus 49 ~~~t~d~ll~fT~~Gr~y~~~~~~lp-~~~r-----~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~-- 120 (327)
T 3uc1_A 49 VCSTHDLILFFTTQGRVYRAKAYDLP-EASR-----TARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGL-- 120 (327)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSC-BCCS-----SSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSE--
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHCc-CCCc-----cCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCE--
Confidence 45667778889999999998754432 1110 111111 122223567888887654 36778888883
Q ss_pred cCCCceEEEeeCCCCCcCCCCCCCCeecceeeeccCCCCCCcEE--EEeecCceEEEEEccCCCCCcCCCeEEEeecC--
Q 013912 80 KGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY--EVTCGSFHTALLTHRKRPNDMLESMCWTFGLG-- 155 (434)
Q Consensus 80 ~~~~~~vy~wG~N~~GQLG~g~~~~~~~P~~v~~~~~~~~~~I~--~Is~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n-- 155 (434)
+.-.-...+-... . .-...-.+... ..++ .++.+..+.+++|++|+ +|.+-..
T Consensus 121 ------iKr~~l~~~~~~~------r-~G~~~i~lke~--D~lv~~~~~~~~d~ill~T~~G~--------~~rf~~~~~ 177 (327)
T 3uc1_A 121 ------VKKSKLTDFDSNR------S-GGIVAVNLRDN--DELVGAVLCSAGDDLLLVSANGQ--------SIRFSATDE 177 (327)
T ss_dssp ------EEEEEGGGGCCCC------S-SCEESCBCCTT--CCEEEEEEECTTCEEEEEETTSE--------EEEEECCTT
T ss_pred ------EEEeEHHHhhccc------c-CceEEEEECCC--CEEEEEEEecCCCEEEEEECCCe--------EEEEECccc
Confidence 3333322211100 0 01111112111 2333 34456678899999999 8888766
Q ss_pred CCCCCCCCCCCCccccEEeeeCCCcceEEEEEecC--ceEEEEecCCcEEEE
Q 013912 156 ENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSW 205 (434)
Q Consensus 156 ~~GqLG~g~~~~~~~p~~v~~l~~~~~I~~I~~G~--~hs~alt~dG~Vy~w 205 (434)
+--..|..... .++-.|..+.+|+.+.+-. .+-+++|++|.+.-.
T Consensus 178 eip~~gr~a~G-----v~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt 224 (327)
T 3uc1_A 178 ALRPMGRATSG-----VQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRT 224 (327)
T ss_dssp TSCCCCTTSBC-----EESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEE
T ss_pred ccCcCCcCCCC-----eeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEE
Confidence 33333322111 1223455667788776653 356777888866544
No 17
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=66.30 E-value=1.3e+02 Score=31.34 Aligned_cols=18 Identities=17% Similarity=0.065 Sum_probs=14.4
Q ss_pred CceeEEEEcCCCeEEEEeC
Q 013912 253 AAHTVLVTDDGYKLWSWGR 271 (434)
Q Consensus 253 ~~hs~~lt~dG~~vy~wG~ 271 (434)
..|++++..+| ++|..|-
T Consensus 598 ~~~~~~~~~~~-~iyv~GG 615 (695)
T 2zwa_A 598 YGSQIKYITPR-KLLIVGG 615 (695)
T ss_dssp BSCEEEEEETT-EEEEECC
T ss_pred ccceEEEeCCC-EEEEECC
Confidence 56788777768 9999984
No 18
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=62.51 E-value=99 Score=28.69 Aligned_cols=168 Identities=13% Similarity=0.055 Sum_probs=87.7
Q ss_pred EEecCCeEEEEecCCcEEEecCCCCCCCCCCCCccccccccceeeccCCCCcEEEEEec-----CCeEEEEEcCCCcccC
Q 013912 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG-----SEHVVALVSAGETYKG 81 (434)
Q Consensus 7 Va~G~~h~~alt~~G~vy~wG~n~~G~qlg~g~~~~~~~~~p~~v~~~~~~~I~~Vs~G-----~~hs~~lt~~G~vy~~ 81 (434)
++....+.+++|+.|++|.+-...-. ..+.. ..-.+....+..-++.+|+.+... ..+.+++|++|.
T Consensus 54 ~~~~~~~ll~~T~~G~~~~~~~~~ip-~~~r~---~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~---- 125 (312)
T 1suu_A 54 CVNTHDYLFMISNEGKLYLINAYEIK-DSSRA---SKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGK---- 125 (312)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSC-C----------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSE----
T ss_pred EECCCCEEEEEECCCeEEEEEHHHCC-CCCcc---CCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCe----
Confidence 55677889999999999998765331 11100 000111112233356678877654 346788899995
Q ss_pred CCceEEEeeCCCCCcCCCCCCCCeecceeeeccCCCCCCcEEEEe--ecCceEEEEEccCCCCCcCCCeEEEeecCCCCC
Q 013912 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVT--CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQ 159 (434)
Q Consensus 82 ~~~~vy~wG~N~~GQLG~g~~~~~~~P~~v~~~~~~~~~~I~~Is--~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~~Gq 159 (434)
++..-...+-.. . ..-...-.+.. ...++.+. .+..+.+++|++|. +..+-..+.-.
T Consensus 126 ----~kr~~l~~~~~~-r------~~G~~~i~L~~--~d~lv~~~~~~~~~~i~l~T~~G~--------~~r~~~~ev~~ 184 (312)
T 1suu_A 126 ----IARFESTDFKAV-K------SRGVIVIKLND--KDFVTSAEIVFKDEKVICLSKKGS--------AFIFNSRDVRL 184 (312)
T ss_dssp ----EEEEEGGGGCC-----------CEECBCCCT--TCCEEEEEEECTTCEEEEEETTSE--------EEEEEGGGSCB
T ss_pred ----EEEEEHHHhhcc-C------CCcEEEEecCC--CCEEEEEEEeCCCCEEEEEeCCCc--------EEEEEHHHccc
Confidence 555543332100 0 00111111222 22454433 35667889999998 77776655433
Q ss_pred CCCCCCCCccccEEeeeCCCcceEEEEEe--cCceEEEEecCCcEEEEeCC
Q 013912 160 LGHGTTQSALVPEQVKELPQYVYLVSVDC--GLFHTSVVSSAGDVWSWGME 208 (434)
Q Consensus 160 LG~g~~~~~~~p~~v~~l~~~~~I~~I~~--G~~hs~alt~dG~Vy~wG~n 208 (434)
.|.... =..+-.+..+..|+.+.. ...+-++++++|.+.-.-.+
T Consensus 185 ~gR~~~-----Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 185 TNRGTQ-----GVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp CCTTBC-----CEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred cCCCCC-----CeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence 332211 112222334555666543 34457788888876665544
No 19
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=60.80 E-value=6.2 Score=28.97 Aligned_cols=20 Identities=30% Similarity=0.634 Sum_probs=16.8
Q ss_pred HHhhhhHHHHHHHHHHHHHHh
Q 013912 406 MLAGVKDKLMKRRIQEIVNEC 426 (434)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~ 426 (434)
.+++|-||| +||++|++.+|
T Consensus 4 llSAVeDKL-Rrrl~E~~~q~ 23 (78)
T 3iv1_A 4 LISAVSDKL-RWRMKEEMDRA 23 (78)
T ss_dssp HHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHH
Confidence 478999986 78899999876
No 20
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=57.85 E-value=1.3e+02 Score=28.52 Aligned_cols=190 Identities=9% Similarity=0.084 Sum_probs=106.2
Q ss_pred eEEEEecCCeEEEEecCCcEEEecCCCCCCCCCCCCccccccccceeeccCCCCcEEEEEecCCeEEEEEcCCCcccCCC
Q 013912 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGED 83 (434)
Q Consensus 4 I~~Va~G~~h~~alt~~G~vy~wG~n~~G~qlg~g~~~~~~~~~p~~v~~~~~~~I~~Vs~G~~hs~~lt~~G~vy~~~~ 83 (434)
|..++..+.+.+.-..+|.|..|-.... . . ...+. -....|..++......+.-..+|.
T Consensus 136 v~~~~~d~~~l~~g~~dg~i~iwd~~~~--~-------~-----~~~~~-~h~~~v~~l~~~~~~l~sg~~dg~------ 194 (435)
T 1p22_A 136 VYCLQYDDQKIVSGLRDNTIKIWDKNTL--E-------C-----KRILT-GHTGSVLCLQYDERVIITGSSDST------ 194 (435)
T ss_dssp EEEEECCSSEEEEEESSSCEEEEESSSC--C-------E-----EEEEC-CCSSCEEEEECCSSEEEEEETTSC------
T ss_pred EEEEEECCCEEEEEeCCCeEEEEeCCCC--e-------E-----EEEEc-CCCCcEEEEEECCCEEEEEcCCCe------
Confidence 5667776777777788899999965322 0 0 01111 122367778775556666666775
Q ss_pred ceEEEeeCCCCCcCCCCCCCCeecceeeeccCCCCCCcEEEEeecCceEEEEEccCCCCCcCCCeEEEeecCCCCCCCCC
Q 013912 84 LVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG 163 (434)
Q Consensus 84 ~~vy~wG~N~~GQLG~g~~~~~~~P~~v~~~~~~~~~~I~~Is~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~~GqLG~g 163 (434)
|..|-.... + .+..+... ...|..++...+..+.-..+|. |..|=......
T Consensus 195 --i~vwd~~~~-~-------------~~~~~~~h-~~~v~~l~~~~~~l~s~s~dg~--------i~vwd~~~~~~---- 245 (435)
T 1p22_A 195 --VRVWDVNTG-E-------------MLNTLIHH-CEAVLHLRFNNGMMVTCSKDRS--------IAVWDMASPTD---- 245 (435)
T ss_dssp --EEEEESSSC-C-------------EEEEECCC-CSCEEEEECCTTEEEEEETTSC--------EEEEECSSSSC----
T ss_pred --EEEEECCCC-c-------------EEEEEcCC-CCcEEEEEEcCCEEEEeeCCCc--------EEEEeCCCCCC----
Confidence 677754321 1 11111111 1257777777666666667776 88885432110
Q ss_pred CCCCccccEEeeeCCCcceEEEEEecCceEEEEecCCcEEEEeCCCCCCCCCCCCCCCCCCCCceeeEEeeCCCCCCCCC
Q 013912 164 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243 (434)
Q Consensus 164 ~~~~~~~p~~v~~l~~~~~I~~I~~G~~hs~alt~dG~Vy~wG~n~~lG~~~~~~~~~~~~~~~~~P~~i~~~~~~~~~~ 243 (434)
......+. .....|..++......++-+.||.|..|-.... . ....+.. ..
T Consensus 246 ----~~~~~~~~--~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~---------------~--~~~~~~~------~~ 296 (435)
T 1p22_A 246 ----ITLRRVLV--GHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTC---------------E--FVRTLNG------HK 296 (435)
T ss_dssp ----CEEEEEEC--CCSSCEEEEEEETTEEEEEETTSEEEEEETTTC---------------C--EEEEEEC------CS
T ss_pred ----ceeeeEec--CCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcC---------------c--EEEEEcC------CC
Confidence 00001111 123457777776677777788999999975430 0 0111111 01
Q ss_pred CCcEEEEecCceeEEEEcCCCeEEEEeCCC
Q 013912 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRGR 273 (434)
Q Consensus 244 ~~i~~I~~G~~hs~~lt~dG~~vy~wG~n~ 273 (434)
..|..++......+.-..|| .|..|-...
T Consensus 297 ~~v~~~~~~~~~l~~g~~dg-~i~iwd~~~ 325 (435)
T 1p22_A 297 RGIACLQYRDRLVVSGSSDN-TIRLWDIEC 325 (435)
T ss_dssp SCEEEEEEETTEEEEEETTS-CEEEEETTT
T ss_pred CcEEEEEeCCCEEEEEeCCC-eEEEEECCC
Confidence 23556666666667777888 899997654
No 21
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=55.92 E-value=1.4e+02 Score=28.29 Aligned_cols=189 Identities=10% Similarity=0.095 Sum_probs=103.9
Q ss_pred CeEEEEecCCeEEEEecCCcEEEecCCCCCCCCCCCCccccccccceeeccCCCCcEEEEEecCCeEEEEEcCCCcccCC
Q 013912 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGE 82 (434)
Q Consensus 3 kI~~Va~G~~h~~alt~~G~vy~wG~n~~G~qlg~g~~~~~~~~~p~~v~~~~~~~I~~Vs~G~~hs~~lt~~G~vy~~~ 82 (434)
.|..++..+...+.-..||.|..|-.... + .. ..+. .....|..++......+.-..+|.
T Consensus 175 ~v~~l~~~~~~l~sg~~dg~i~vwd~~~~--~-------~~-----~~~~-~h~~~v~~l~~~~~~l~s~s~dg~----- 234 (435)
T 1p22_A 175 SVLCLQYDERVIITGSSDSTVRVWDVNTG--E-------ML-----NTLI-HHCEAVLHLRFNNGMMVTCSKDRS----- 234 (435)
T ss_dssp CEEEEECCSSEEEEEETTSCEEEEESSSC--C-------EE-----EEEC-CCCSCEEEEECCTTEEEEEETTSC-----
T ss_pred cEEEEEECCCEEEEEcCCCeEEEEECCCC--c-------EE-----EEEc-CCCCcEEEEEEcCCEEEEeeCCCc-----
Confidence 46667776666666788899999975432 1 00 0111 123467888877777777777775
Q ss_pred CceEEEeeCCCCCcCCCCCCCCeecceeeeccCCCCCCcEEEEeecCceEEEEEccCCCCCcCCCeEEEeecCCCCCCCC
Q 013912 83 DLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162 (434)
Q Consensus 83 ~~~vy~wG~N~~GQLG~g~~~~~~~P~~v~~~~~~~~~~I~~Is~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~~GqLG~ 162 (434)
|..|-...... ......+.. ....|..++....+.+.-..+|. |..|=.... +
T Consensus 235 ---i~vwd~~~~~~-----------~~~~~~~~~-~~~~v~~~~~~~~~l~s~~~dg~--------i~vwd~~~~-~--- 287 (435)
T 1p22_A 235 ---IAVWDMASPTD-----------ITLRRVLVG-HRAAVNVVDFDDKYIVSASGDRT--------IKVWNTSTC-E--- 287 (435)
T ss_dssp ---EEEEECSSSSC-----------CEEEEEECC-CSSCEEEEEEETTEEEEEETTSE--------EEEEETTTC-C---
T ss_pred ---EEEEeCCCCCC-----------ceeeeEecC-CCCcEEEEEeCCCEEEEEeCCCe--------EEEEECCcC-c---
Confidence 66775432111 000111111 11257777776666666666666 888854211 0
Q ss_pred CCCCCccccEEeeeCCCcceEEEEEecCceEEEEecCCcEEEEeCCCCCCCCCCCCCCCCCCCCceeeEEeeCCCCCCCC
Q 013912 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242 (434)
Q Consensus 163 g~~~~~~~p~~v~~l~~~~~I~~I~~G~~hs~alt~dG~Vy~wG~n~~lG~~~~~~~~~~~~~~~~~P~~i~~~~~~~~~ 242 (434)
....+.. ....|..++......++-..||.|..|-... +. ....+.. .
T Consensus 288 -------~~~~~~~--~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~--~~---------------~~~~~~~------h 335 (435)
T 1p22_A 288 -------FVRTLNG--HKRGIACLQYRDRLVVSGSSDNTIRLWDIEC--GA---------------CLRVLEG------H 335 (435)
T ss_dssp -------EEEEEEC--CSSCEEEEEEETTEEEEEETTSCEEEEETTT--CC---------------EEEEECC------C
T ss_pred -------EEEEEcC--CCCcEEEEEeCCCEEEEEeCCCeEEEEECCC--CC---------------EEEEEeC------C
Confidence 1111111 2234667776666777778899999997543 00 0111111 1
Q ss_pred CCCcEEEEecCceeEEEEcCCCeEEEEeC
Q 013912 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGR 271 (434)
Q Consensus 243 ~~~i~~I~~G~~hs~~lt~dG~~vy~wG~ 271 (434)
...|..++....+.+.-..|| .|..|-.
T Consensus 336 ~~~v~~~~~~~~~l~sg~~dg-~i~vwd~ 363 (435)
T 1p22_A 336 EELVRCIRFDNKRIVSGAYDG-KIKVWDL 363 (435)
T ss_dssp SSCEEEEECCSSEEEEEETTS-CEEEEEH
T ss_pred cCcEEEEEecCCEEEEEeCCC-cEEEEEC
Confidence 123556666566666666788 8999974
No 22
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=54.45 E-value=1.2e+02 Score=27.15 Aligned_cols=117 Identities=15% Similarity=0.160 Sum_probs=60.9
Q ss_pred CcEEEEEecCCeEEEEEcCCCcccCCCceEEEeeCCCCCcCCCCCCCCeecceeeeccCCCCCCcEEEEeecCc-eEEEE
Q 013912 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSF-HTALL 135 (434)
Q Consensus 57 ~~I~~Vs~G~~hs~~lt~~G~vy~~~~~~vy~wG~N~~GQLG~g~~~~~~~P~~v~~~~~~~~~~I~~Is~G~~-ht~~L 135 (434)
-.+.-...+.....+++.+|+ .+|.++... .|..+..+... .+. |++..+ ..+++
T Consensus 136 G~~lv~~~~~~~v~~~d~~G~-------~~w~~~~~~-------------~~~~~~~~~~g---~~~-v~~~~~~~v~~~ 191 (276)
T 3no2_A 136 GNYLVPLFATSEVREIAPNGQ-------LLNSVKLSG-------------TPFSSAFLDNG---DCL-VACGDAHCFVQL 191 (276)
T ss_dssp SCEEEEETTTTEEEEECTTSC-------EEEEEECSS-------------CCCEEEECTTS---CEE-EECBTTSEEEEE
T ss_pred CCEEEEecCCCEEEEECCCCC-------EEEEEECCC-------------CccceeEcCCC---CEE-EEeCCCCeEEEE
Confidence 345444445566778888888 588887631 12223333221 344 444444 46677
Q ss_pred Ecc-CCCCCcCCCeEEEeecCCCCCCCCCCCCCccccEEeeeCCCcceEEEEEe--c---------CceEEEEecCCc-E
Q 013912 136 THR-KRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDC--G---------LFHTSVVSSAGD-V 202 (434)
Q Consensus 136 t~~-G~~~~~~~~~vy~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~~I~~I~~--G---------~~hs~alt~dG~-V 202 (434)
+.+ |++ +|.++.+.... .....|.-+..++.+ .+. |+. | ....+.++.+|+ |
T Consensus 192 d~~tG~~-------~w~~~~~~~~~------~~l~~~~~~~~~~~G-~i~-v~~~~g~~~~~~~~~~~~~~~~~~~g~~~ 256 (276)
T 3no2_A 192 NLESNRI-------VRRVNANDIEG------VQLFFVAQLFPLQNG-GLY-ICNWQGHDREAGKGKHPQLVEIDSEGKVV 256 (276)
T ss_dssp CTTTCCE-------EEEEEGGGSBS------CCCSEEEEEEECTTS-CEE-EEEECTTCTTGGGSCCCSEEEECTTSBEE
T ss_pred eCcCCcE-------EEEecCCCCCC------ccccccccceEcCCC-CEE-EEeccCccccccccCCceEEEECCCCCEE
Confidence 777 774 88887542110 012234444444433 222 333 2 335788888888 4
Q ss_pred EEEeCCCCCC
Q 013912 203 WSWGMEKGLG 212 (434)
Q Consensus 203 y~wG~n~~lG 212 (434)
|.+.....+|
T Consensus 257 W~~~~~~~~~ 266 (276)
T 3no2_A 257 WQLNDKVKFG 266 (276)
T ss_dssp EEECCTTTSC
T ss_pred EEecCccccc
Confidence 5554444333
No 23
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=53.04 E-value=1.5e+02 Score=27.97 Aligned_cols=107 Identities=13% Similarity=0.055 Sum_probs=60.1
Q ss_pred cEEEEeecCceEEEEEccCCCCCcCCCeEEEeecCCCCCCCCCCCCCccccEEeeeCC-CcceEEEEEecCceEEEEecC
Q 013912 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSA 199 (434)
Q Consensus 121 ~I~~Is~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~~GqLG~g~~~~~~~p~~v~~l~-~~~~I~~I~~G~~hs~alt~d 199 (434)
.|..++......+.-..+|. |..|-... ...+..+. ....|..++....+.++-+.|
T Consensus 241 ~v~~~~~~~~~l~~~~~dg~--------i~iwd~~~--------------~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d 298 (445)
T 2ovr_B 241 AVRCVQYDGRRVVSGAYDFM--------VKVWDPET--------------ETCLHTLQGHTNRVYSLQFDGIHVVSGSLD 298 (445)
T ss_dssp CEEEEEECSSCEEEEETTSC--------EEEEEGGG--------------TEEEEEECCCSSCEEEEEECSSEEEEEETT
T ss_pred cEEEEEECCCEEEEEcCCCE--------EEEEECCC--------------CcEeEEecCCCCceEEEEECCCEEEEEeCC
Confidence 46666665555555566666 77774321 12222221 234577777766666777789
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCCCceeeEEeeCCCCCCCCCCCcEEEEecCceeEEEEcCCCeEEEEeCCC
Q 013912 200 GDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGR 273 (434)
Q Consensus 200 G~Vy~wG~n~~lG~~~~~~~~~~~~~~~~~P~~i~~~~~~~~~~~~i~~I~~G~~hs~~lt~dG~~vy~wG~n~ 273 (434)
|.|+.|-.... . ....+.. ....+..+.......+.-..|| .|..|-...
T Consensus 299 ~~i~i~d~~~~---------------~--~~~~~~~------~~~~v~~~~~~~~~l~~~~~dg-~i~vwd~~~ 348 (445)
T 2ovr_B 299 TSIRVWDVETG---------------N--CIHTLTG------HQSLTSGMELKDNILVSGNADS-TVKIWDIKT 348 (445)
T ss_dssp SCEEEEETTTC---------------C--EEEEECC------CCSCEEEEEEETTEEEEEETTS-CEEEEETTT
T ss_pred CeEEEEECCCC---------------C--EEEEEcC------CcccEEEEEEeCCEEEEEeCCC-eEEEEECCC
Confidence 99999975430 0 0011111 0123445655566666677788 999997543
No 24
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=51.80 E-value=1.6e+02 Score=27.83 Aligned_cols=111 Identities=11% Similarity=0.155 Sum_probs=62.4
Q ss_pred cEEEEeecCceEEEEEccCCCCCcCCCeEEEeecCCCCCCCCCCCCCccccEEeeeCCCcceEEEEEecCceEEEEecCC
Q 013912 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAG 200 (434)
Q Consensus 121 ~I~~Is~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~~I~~I~~G~~hs~alt~dG 200 (434)
.|..++....+.+.-..+|. |..|=... ++ ....+.. ....+..++......++-..||
T Consensus 281 ~v~~~~~~~~~l~~~~~d~~--------i~i~d~~~-~~----------~~~~~~~--~~~~v~~~~~~~~~l~~~~~dg 339 (445)
T 2ovr_B 281 RVYSLQFDGIHVVSGSLDTS--------IRVWDVET-GN----------CIHTLTG--HQSLTSGMELKDNILVSGNADS 339 (445)
T ss_dssp CEEEEEECSSEEEEEETTSC--------EEEEETTT-CC----------EEEEECC--CCSCEEEEEEETTEEEEEETTS
T ss_pred ceEEEEECCCEEEEEeCCCe--------EEEEECCC-CC----------EEEEEcC--CcccEEEEEEeCCEEEEEeCCC
Confidence 57777776666666666776 88885432 11 0111111 1234556666666666677899
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCCCceeeEEeeCCCCCCCCCCCcEEEEecCceeEEEEcCCCeEEEEeCCC
Q 013912 201 DVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGR 273 (434)
Q Consensus 201 ~Vy~wG~n~~lG~~~~~~~~~~~~~~~~~P~~i~~~~~~~~~~~~i~~I~~G~~hs~~lt~dG~~vy~wG~n~ 273 (434)
.|+.|-... + . ....+.... .....|..++....+.+.-..|| .|..|-...
T Consensus 340 ~i~vwd~~~--~-------------~--~~~~~~~~~---~~~~~v~~~~~~~~~l~s~~~dg-~v~iwd~~~ 391 (445)
T 2ovr_B 340 TVKIWDIKT--G-------------Q--CLQTLQGPN---KHQSAVTCLQFNKNFVITSSDDG-TVKLWDLKT 391 (445)
T ss_dssp CEEEEETTT--C-------------C--EEEEECSTT---SCSSCEEEEEECSSEEEEEETTS-EEEEEETTT
T ss_pred eEEEEECCC--C-------------c--EEEEEccCC---CCCCCEEEEEECCCEEEEEeCCC-eEEEEECCC
Confidence 999997542 0 0 111111100 01123666766666777777899 999997543
No 25
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=47.88 E-value=74 Score=28.66 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=12.7
Q ss_pred CceEEEEecCCcEEEEeCC
Q 013912 190 LFHTSVVSSAGDVWSWGME 208 (434)
Q Consensus 190 ~~hs~alt~dG~Vy~wG~n 208 (434)
..|++++. ++++|.+|-.
T Consensus 192 ~~~~~~~~-~~~i~v~GG~ 209 (306)
T 3ii7_A 192 KNHGLVFV-KDKIFAVGGQ 209 (306)
T ss_dssp BSCEEEEE-TTEEEEECCE
T ss_pred hcceEEEE-CCEEEEEeCC
Confidence 35666655 7899999853
No 26
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=44.73 E-value=1.4e+02 Score=26.68 Aligned_cols=18 Identities=6% Similarity=0.130 Sum_probs=12.5
Q ss_pred CeEEEEecCCcEEEecCCC
Q 013912 12 MMSLAIDNAGALWMWGNCP 30 (434)
Q Consensus 12 ~h~~alt~~G~vy~wG~n~ 30 (434)
.|++++ -+++||.+|...
T Consensus 55 ~~~~~~-~~~~l~v~GG~~ 72 (301)
T 2vpj_A 55 YVASVS-LHDRIYVIGGYD 72 (301)
T ss_dssp SCEEEE-ETTEEEEECCBC
T ss_pred cccEEE-ECCEEEEEcCCC
Confidence 355555 468999999754
No 27
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=43.71 E-value=1.9e+02 Score=26.24 Aligned_cols=154 Identities=15% Similarity=0.069 Sum_probs=83.4
Q ss_pred CCeEEEEecCCcEEEecCCCCCCCCCCCCccccccccceeeccCCCCcEEEEEec---CCeEEEEEcCCCcccCCCceEE
Q 013912 11 GMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG---SEHVVALVSAGETYKGEDLVCY 87 (434)
Q Consensus 11 ~~h~~alt~~G~vy~wG~n~~G~qlg~g~~~~~~~~~p~~v~~~~~~~I~~Vs~G---~~hs~~lt~~G~vy~~~~~~vy 87 (434)
..+.+++|++|++|.--..... .+ ... . + .-.+.+|+.+.+- ....+++|++|. +.
T Consensus 35 ~~~ll~fT~~G~v~~~~~~~lp----~~--~~~-----~-l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~--------iK 93 (276)
T 3no0_A 35 TEGLFLVSNRGRVYWIAGSQAL----QG--SKV-----S-L-KSREEKIVGAFIREKFGNRLLLATKKGY--------VK 93 (276)
T ss_dssp TSCEEEEETTSEEEEECSHHHH----TS--EEC-----C-C-SSTTCCEEEEEEGGGSCSEEEEEETTSE--------EE
T ss_pred CCEEEEEcCCCeEEEEEhhhCc----cC--ccc-----c-c-CCCCCEEEEEECCcCCCCEEEEEeCCCE--------EE
Confidence 3457899999999986543221 00 000 0 3 2256788888762 246788899984 44
Q ss_pred EeeCCCCCcCCCCCCCCeecceeeeccCCCCCCcEEEEe--ecCceEEEEEccCCCCCcCCCeEEEeecCCCCCCCCCCC
Q 013912 88 SWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVT--CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165 (434)
Q Consensus 88 ~wG~N~~GQLG~g~~~~~~~P~~v~~~~~~~~~~I~~Is--~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~~GqLG~g~~ 165 (434)
-.-...+-+-. .-...-.+.. ...++.+. .+..+.+++|++|+ +|.+-..+.-..|....
T Consensus 94 r~~l~~~~~~~--------~G~~~i~lke--gD~l~~~~~~~~~~~ill~T~~G~--------~~r~~~~eip~~gR~a~ 155 (276)
T 3no0_A 94 KIPLAEFEYKA--------QGMPIIKLTE--GDEVVSIASSVDETHILLFTKKGR--------VARFSVREVPPSTPGAR 155 (276)
T ss_dssp EEEGGGTTTCS--------TTEECSCCCT--TCCEEEEEECCSSCEEEEEETTSE--------EEEEEGGGSCBCCTTCC
T ss_pred EEEHHHhhhhc--------CCeEEEecCC--CCEEEEEEEeCCCCEEEEEECCCE--------EEEEEhhhCCCcCCCCC
Confidence 44333321100 0111111211 12344433 34556889999998 99887655444443221
Q ss_pred CCccccEEeeeCCCcceEEEEEecC--ceEEEEecCCcEEEEeCC
Q 013912 166 QSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGME 208 (434)
Q Consensus 166 ~~~~~p~~v~~l~~~~~I~~I~~G~--~hs~alt~dG~Vy~wG~n 208 (434)
. .+.-.+..+.+|+.+.+.. .+-+++|++|.+.-.-..
T Consensus 156 G-----v~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~ 195 (276)
T 3no0_A 156 G-----VQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHE 195 (276)
T ss_dssp C-----EECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGG
T ss_pred C-----EEEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHH
Confidence 1 1122344566777765543 356777888877765543
No 28
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=43.41 E-value=1.5e+02 Score=26.74 Aligned_cols=19 Identities=5% Similarity=0.074 Sum_probs=13.2
Q ss_pred CCeEEEEecCCcEEEecCC
Q 013912 11 GMMSLAIDNAGALWMWGNC 29 (434)
Q Consensus 11 ~~h~~alt~~G~vy~wG~n 29 (434)
+.+..+..-+++||.+|..
T Consensus 36 r~~~~~~~~~~~iyv~GG~ 54 (315)
T 4asc_A 36 KNHVSLVTKENQVFVAGGL 54 (315)
T ss_dssp SSEEEEECTTCCEEEEEEE
T ss_pred ccceEEEEECCEEEEEcCc
Confidence 4444455568999999973
No 29
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=42.64 E-value=1.2e+02 Score=27.04 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=12.4
Q ss_pred CeEEEEecCCcEEEecCCC
Q 013912 12 MMSLAIDNAGALWMWGNCP 30 (434)
Q Consensus 12 ~h~~alt~~G~vy~wG~n~ 30 (434)
.|+++.. +++||.+|...
T Consensus 54 ~~~~~~~-~~~lyv~GG~~ 71 (302)
T 2xn4_A 54 RAGMVYM-AGLVFAVGGFN 71 (302)
T ss_dssp SCEEEEE-TTEEEEESCBC
T ss_pred cceEEEE-CCEEEEEeCcC
Confidence 3555544 78999999643
No 30
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=39.22 E-value=2.3e+02 Score=26.02 Aligned_cols=163 Identities=13% Similarity=0.021 Sum_probs=83.9
Q ss_pred EEEecCCeEEEEecCCcEEEecCCCCCCCCCCCCccccccccc--eeeccCCCCcEEEEEe-----cCCeEEEEEcCCCc
Q 013912 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTP--SPVWDFHGHTVVKVAC-----GSEHVVALVSAGET 78 (434)
Q Consensus 6 ~Va~G~~h~~alt~~G~vy~wG~n~~G~qlg~g~~~~~~~~~p--~~v~~~~~~~I~~Vs~-----G~~hs~~lt~~G~v 78 (434)
.++....+.+++|+.|++|..-...-. ..+. ...-.| ..+..-++.+|+.+.. ...+.+++|++|.
T Consensus 48 ~~~~~~~~ll~fT~~G~~~~~~~~elp-~~~~-----~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~- 120 (307)
T 1zi0_A 48 LVANTHDHILCFSSRGRVYSMKVYQLP-EATR-----GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT- 120 (307)
T ss_dssp EEEETTCEEEEEETTSEEEEEEGGGSC-CCCS-----SSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSE-
T ss_pred EEECCCCEEEEEECCCEEEEEEhhHCc-CCCC-----CCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCe-
Confidence 356678889999999999999875432 1111 011111 1122224667877754 2335777888884
Q ss_pred ccCCCceEEEeeCCCCCcCCCCCCCCeecceeeeccCCCCCCcEEE--EeecCceEEEEEccCCCCCcCCCeEEEeecCC
Q 013912 79 YKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYE--VTCGSFHTALLTHRKRPNDMLESMCWTFGLGE 156 (434)
Q Consensus 79 y~~~~~~vy~wG~N~~GQLG~g~~~~~~~P~~v~~~~~~~~~~I~~--Is~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~ 156 (434)
+--.-...+-... ......-.+... ..++. ...+..+.+++|++|+ ++.+-..+
T Consensus 121 -------~Krt~l~e~~~~~-------r~G~~~i~l~~~--d~lv~~~~~~~~~~i~l~T~~G~--------~irf~~~~ 176 (307)
T 1zi0_A 121 -------VKKTVLTEFNRLR-------TAGKVAIKLVDG--DELIGVDLTSGEDEVMLFSAEGK--------VVRFKESS 176 (307)
T ss_dssp -------EEEEEGGGGTTCC-------TTCEESSCCCTT--CCEEEEEEECTTCEEEEEETTSE--------EEEEEGGG
T ss_pred -------EEEEEHHHhhccc-------cCCeEEEEECCC--CEEEEEEEeCCCCEEEEECCCCc--------EEEEEHHH
Confidence 3333222111100 011111112111 23443 3346678899999998 88776655
Q ss_pred CCCCCCCCCCCccccEEeeeCCCcceEEEEEec--CceEEEEecCCcEEE
Q 013912 157 NGQLGHGTTQSALVPEQVKELPQYVYLVSVDCG--LFHTSVVSSAGDVWS 204 (434)
Q Consensus 157 ~GqLG~g~~~~~~~p~~v~~l~~~~~I~~I~~G--~~hs~alt~dG~Vy~ 204 (434)
.-.+|.... -...-.+..+..|+.+..- ...-+++|++|.+--
T Consensus 177 v~~~gr~a~-----Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr 221 (307)
T 1zi0_A 177 VRAMGCNTT-----GVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKR 221 (307)
T ss_dssp SCBCCTTCC-----CEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEE
T ss_pred cCccCCCCC-----CeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEE
Confidence 444443211 1122234456677776543 234566677775443
No 31
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=39.16 E-value=2.6e+02 Score=26.60 Aligned_cols=127 Identities=15% Similarity=0.056 Sum_probs=63.8
Q ss_pred EEEecCCeEEEEecCCcEEEecCCCCCCCCCCCCccccccccceeeccCCCCcEEEEEec-----CCeEEEEEcCCCccc
Q 013912 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG-----SEHVVALVSAGETYK 80 (434)
Q Consensus 6 ~Va~G~~h~~alt~~G~vy~wG~n~~G~qlg~g~~~~~~~~~p~~v~~~~~~~I~~Vs~G-----~~hs~~lt~~G~vy~ 80 (434)
.++.+..+.+++|+.|++|.+-...-. ..+... .-.+....+..-.+.+|+.+.+- ..+.+++|++|.
T Consensus 52 ~~~~t~d~ll~fT~~G~~~~~~~~eip-~~~r~a---~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~--- 124 (370)
T 3l6v_A 52 WLVNTHDTLLTFTSSGKVFWLPVHQLP-EAGSNA---RGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGT--- 124 (370)
T ss_dssp EEECTTCEEEEEETTSEEEEEEGGGSC-BCCTTS---CCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSE---
T ss_pred EEecCCCEEEEEeCCCeEEEEEHHHCc-CCCccc---CCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCe---
Confidence 345566678889999999998754331 111100 00011111222246788887654 336788888884
Q ss_pred CCCceEEEeeCCCCCcCCCCCCCCeecceeeeccCCCCCCcEE--EEeecCceEEEEEccCCCCCcCCCeEEEeecCCCC
Q 013912 81 GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY--EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENG 158 (434)
Q Consensus 81 ~~~~~vy~wG~N~~GQLG~g~~~~~~~P~~v~~~~~~~~~~I~--~Is~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~~G 158 (434)
+--.-...+-... . .-...-.+... ..++ .+..+..+.+++|++|+ +..+-...--
T Consensus 125 -----vKrt~l~e~~~~~---~----~G~~ai~L~~~--d~lv~v~~~~~~~~i~l~T~~G~--------~irf~~~~v~ 182 (370)
T 3l6v_A 125 -----VKKTPLSEFAFRL---A----RGKIAINLDEG--DALVGVALTDGDRDVLLFASNGK--------TVRFGESTVR 182 (370)
T ss_dssp -----EEEEEGGGGCSCC---T----TCEESSCCCTT--CCEEEEEEECSCCEEEEEETTSE--------EEEEEGGGSC
T ss_pred -----EEEeEHHHhhccc---C----CceEEEEeCCC--CEEEEEEEeCCCceEEEEeCCCe--------EEEEEccccC
Confidence 3333322221110 0 00111112111 1233 34456678999999998 7766544433
Q ss_pred CCC
Q 013912 159 QLG 161 (434)
Q Consensus 159 qLG 161 (434)
.+|
T Consensus 183 ~~g 185 (370)
T 3l6v_A 183 SMG 185 (370)
T ss_dssp BCC
T ss_pred ccC
Confidence 333
No 32
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=38.18 E-value=1.4e+02 Score=30.65 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=15.9
Q ss_pred cCceEEEEecCCcEEEEeC
Q 013912 189 GLFHTSVVSSAGDVWSWGM 207 (434)
Q Consensus 189 G~~hs~alt~dG~Vy~wG~ 207 (434)
-+.|++++..+|+||++|-
T Consensus 287 R~~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 287 RGYQSSATMSDGRVFTIGG 305 (656)
T ss_dssp CSSCEEEECTTSCEEEECC
T ss_pred ccccceEEecCCeEEEEeC
Confidence 3568888888999999996
No 33
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=37.74 E-value=48 Score=30.13 Aligned_cols=17 Identities=12% Similarity=-0.089 Sum_probs=12.2
Q ss_pred CceEEEEecCCcEEEEeC
Q 013912 190 LFHTSVVSSAGDVWSWGM 207 (434)
Q Consensus 190 ~~hs~alt~dG~Vy~wG~ 207 (434)
..|++++. ++++|.+|-
T Consensus 207 ~~~~~~~~-~~~iyv~GG 223 (308)
T 1zgk_A 207 SGAGVCVL-HNCIYAAGG 223 (308)
T ss_dssp BSCEEEEE-TTEEEEECC
T ss_pred ccceEEEE-CCEEEEEeC
Confidence 35666555 789999984
No 34
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=36.98 E-value=69 Score=32.98 Aligned_cols=18 Identities=17% Similarity=0.434 Sum_probs=15.0
Q ss_pred CceeEEEEcCCCeEEEEeC
Q 013912 253 AAHTVLVTDDGYKLWSWGR 271 (434)
Q Consensus 253 ~~hs~~lt~dG~~vy~wG~ 271 (434)
..|++++..+| ++|++|-
T Consensus 288 ~~~s~~~~~dg-~iyv~GG 305 (656)
T 1k3i_A 288 GYQSSATMSDG-RVFTIGG 305 (656)
T ss_dssp SSCEEEECTTS-CEEEECC
T ss_pred cccceEEecCC-eEEEEeC
Confidence 46888888788 9999996
No 35
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=35.62 E-value=2.4e+02 Score=25.24 Aligned_cols=17 Identities=12% Similarity=0.341 Sum_probs=12.0
Q ss_pred CeEEEEecCCcEEEecCC
Q 013912 12 MMSLAIDNAGALWMWGNC 29 (434)
Q Consensus 12 ~h~~alt~~G~vy~wG~n 29 (434)
.|++++. +++||.+|..
T Consensus 91 ~~~~~~~-~~~lyv~GG~ 107 (315)
T 4asc_A 91 LFGLGEA-LNSIYVVGGR 107 (315)
T ss_dssp SCEEEEE-TTEEEEECCE
T ss_pred ceeEEEE-CCEEEEEeCC
Confidence 3555554 7899999974
No 36
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=29.86 E-value=3e+02 Score=24.59 Aligned_cols=19 Identities=11% Similarity=0.160 Sum_probs=13.6
Q ss_pred CCeEEEEecCCcEEEecCC
Q 013912 11 GMMSLAIDNAGALWMWGNC 29 (434)
Q Consensus 11 ~~h~~alt~~G~vy~wG~n 29 (434)
..+..++..+++||.+|..
T Consensus 47 r~~~~~~~~~~~lyv~GG~ 65 (318)
T 2woz_A 47 RNHSSIVTQQNQVYVVGGL 65 (318)
T ss_dssp SSEEEEECSSSCEEEEESS
T ss_pred ccceEEEEECCEEEEECCc
Confidence 4445555678999999973
No 37
>1dvk_A PRP18; PRE-mRNA splicing factor, X-RAY crystallography, RNA binding protein; 2.15A {Saccharomyces cerevisiae} SCOP: a.72.1.1
Probab=23.88 E-value=1.2e+02 Score=25.68 Aligned_cols=49 Identities=10% Similarity=0.129 Sum_probs=28.4
Q ss_pred hHHHHHHhhhhccchhHHH----HHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 013912 380 ITKEWENMLESADRSKLVR----LERFYRNMLAGVKDKLMKRRIQEIVNECLH 428 (434)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (434)
+.++|++-|++-+...+.. |.-.|+..-.+--+.-+...+.+||+.|.+
T Consensus 42 lL~eWe~~L~~~~~~~~~Qtk~~l~PL~~~Lr~~~L~~dil~~L~~Iv~~~q~ 94 (173)
T 1dvk_A 42 ILSRWKASLEAYHPELFLDTKKALFPLLLQLRRNQLAPDLLISLATVLYHLQQ 94 (173)
T ss_dssp HHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 8899999997765444433 222233222222233445567788887754
No 38
>2rr9_C Putative uncharacterized protein UIMC1; Lys63-linked diubiquitin, ubiquitin-interacting motif, ubiqu RAP80, DNA repair, nuclear protein; NMR {Homo sapiens}
Probab=23.54 E-value=42 Score=21.13 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=19.1
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhcc
Q 013912 406 MLAGVKDKLMKRRIQEIVNECLHS 429 (434)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~ 429 (434)
--.--.|.|++..|.|++.+|-+|
T Consensus 23 ~~eE~E~~llrKAIaESLn~~~~s 46 (46)
T 2rr9_C 23 SQEEEEEELLRKAIAESLNSCRPS 46 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSCC
T ss_pred hHHHHHHHHHHHHHHHHHHhccCC
Confidence 334567999999999999999654
No 39
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=20.94 E-value=3.7e+02 Score=25.66 Aligned_cols=65 Identities=14% Similarity=0.081 Sum_probs=41.0
Q ss_pred EEEEEecCceEEEEecCCcEEEEeCCCCCCCCCCCCCCCCCCCCceeeEEeeCCCCCCCCCCCcEEEEecCceeEEEEcC
Q 013912 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDD 262 (434)
Q Consensus 183 I~~I~~G~~hs~alt~dG~Vy~wG~n~~lG~~~~~~~~~~~~~~~~~P~~i~~~~~~~~~~~~i~~I~~G~~hs~~lt~d 262 (434)
|.+|++ ....+++..+|.|..|=... +..+ ....... ..+..+.+-....++++.|
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~s-l~~~--------------~~~~~~~--------~~v~~i~~~~p~~av~~~d 145 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEE-LSEF--------------RTVTSFE--------KPVFQLKNVNNTLVILNSV 145 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSS-TTCE--------------EEEEECS--------SCEEEEEECSSEEEEEETT
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchh-hhcc--------------Cccceee--------cceeeEEecCCCEEEEECC
Confidence 889999 77888888999999997654 1110 0000000 1244555555557777888
Q ss_pred CCeEEEEeCC
Q 013912 263 GYKLWSWGRG 272 (434)
Q Consensus 263 G~~vy~wG~n 272 (434)
| .|+.|=-.
T Consensus 146 G-~L~v~dl~ 154 (388)
T 1xip_A 146 N-DLSALDLR 154 (388)
T ss_dssp S-EEEEEETT
T ss_pred C-CEEEEEcc
Confidence 8 89988543
No 40
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=20.47 E-value=4.4e+02 Score=23.20 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=15.9
Q ss_pred eeEEEEcCCCeEEEEeCCCCCCCCCC
Q 013912 255 HTVLVTDDGYKLWSWGRGRSGVLGTG 280 (434)
Q Consensus 255 hs~~lt~dG~~vy~wG~n~~GqLG~g 280 (434)
+.+.++.+| ++ .|=.++....|..
T Consensus 245 ~~~~~~~~g-~~-~W~~~~~~~~~~~ 268 (276)
T 3no2_A 245 QLVEIDSEG-KV-VWQLNDKVKFGMI 268 (276)
T ss_dssp SEEEECTTS-BE-EEEECCTTTSCCC
T ss_pred eEEEECCCC-CE-EEEecCcccccce
Confidence 578888999 54 5555555566653
Done!