BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013914
(434 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From
Novosphingobium Aromaticivorans
Length = 415
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 113/367 (30%), Positives = 174/367 (47%), Gaps = 29/367 (7%)
Query: 32 GELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGIELIL 91
G + +I +E PYERP LSK YL E T +C+ +++++K +E+ L
Sbjct: 35 GRVLVIGREPEIPYERPPLSKEYLAREKTFE----RICIRPA------QFWEDKAVEMKL 84
Query: 92 STEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDA 151
E+V D A+ T+ G +Y L+ ATG RL+ GAD + +R +DA
Sbjct: 85 GAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRLS---CVGADLAGVHAVRTKEDA 141
Query: 152 DKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFY 211
D+L+ YIGLE +A L ++V+++ P + R+ ++ FY
Sbjct: 142 DRLM-AELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFY 200
Query: 212 EGYYANKGIKIIKGTVAVGFTTNADG-EVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG 270
+ + G+ + G A DG +V V+++DG + ADIV+VG+G P +
Sbjct: 201 QAEHRAHGVDLRTG--AAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALIS 258
Query: 271 QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYR-EMRRVEHVDHARKSAEQAVKTI 329
A G++ D+F +TS DVYA+GD A + R+E V +A A A K I
Sbjct: 259 AGASGGNGVDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDI 318
Query: 330 MATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG--DTVLFGDNDLASATHKFGTYWIK 387
G V Y P+F+S +DL Q G + G + VL GD AT F ++K
Sbjct: 319 C----GAPVP-YKATPWFWSNQYDLKLQTVGLSTGHDNAVLRGD----PATRSFSVVYLK 369
Query: 388 DGKVVGV 394
GKVV +
Sbjct: 370 GGKVVAL 376
>pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2
System From Rhodopseudomonas Palustris
Length = 404
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 118/389 (30%), Positives = 178/389 (45%), Gaps = 30/389 (7%)
Query: 9 VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHV 68
V++ G AG+ +Q PG +A+I+ E PY+RP LSKAYL G F
Sbjct: 4 VLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFR- 62
Query: 69 CVGSGGERLLPE-WYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL 127
PE +++++ IELI S +V D + LL A+G +Y LV+ATG+
Sbjct: 63 ----------PEKFFQDQAIELI-SDRMVSIDREGRKLLLASGTAIEYGHLVLATGARN- 110
Query: 128 RLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNI 187
R+ D V A ++ YLR +D+++ L + +IGLE +A + +
Sbjct: 111 RMLD--VPNASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAG--FIGLEFAATARAKGL 166
Query: 188 DVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG 247
+V +V P M R+ T +I++++ ++ GI++ G A D V V L DG
Sbjct: 167 EVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGD-RVTGVVLSDG 225
Query: 248 RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYR 307
TL D+VVVGVG P + + GI D TS + A+GD A F +
Sbjct: 226 NTLPCDLVVVGVGVIPNVEIAAAAGLPTAAGIIVDQQLLTSDPHISAIGDCALFESVRFG 285
Query: 308 EMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG--D 365
E RVE V +A A + + A G YD P+F+S D Q G G
Sbjct: 286 ETMRVESVQNATDQA----RCVAARLTGDA-KPYDGYPWFWSDQGDDKLQIVGLTAGFDQ 340
Query: 366 TVLFGDNDLASATHKFGTYWIKDGKVVGV 394
V+ G + A F + K GK++G+
Sbjct: 341 VVIRG----SVAERSFSAFCYKAGKLIGI 365
>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1R|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
Length = 431
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 105/387 (27%), Positives = 171/387 (44%), Gaps = 21/387 (5%)
Query: 9 VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHV 68
VI+G G++ A G + G + ++ V P+ P LSKAYL + TA
Sbjct: 8 VIVGTGLAGVEVAFGLRASGWE-GNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRT 66
Query: 69 CVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLR 128
P+ Y + I+L+ T++ + + ++ + G Y LV+ATG
Sbjct: 67 ----------PDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRP 116
Query: 129 LTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNID 188
L A N YLR ++DA+ + YIGLE++A N+
Sbjct: 117 LPVASGAVGKANNFRYLRTLEDAECI--RRQLIADNRLVVIGGGYIGLEVAATAIKANMH 174
Query: 189 VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE-VKEVKLKDG 247
V+++ + R+ ++AFYE + G+ I GT GF + D + V V +DG
Sbjct: 175 VTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDG 234
Query: 248 RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYR 307
L AD+V+ G+G P L + GI ++ +TS + AVGD A F +LY
Sbjct: 235 TRLPADLVIAGIGLIPNCELASAAGLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQLYD 294
Query: 308 EMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTV 367
R+E V +A EQA K I A GK V + P+F+S +++ + G + G
Sbjct: 295 RWVRIESVPNA---LEQARK-IAAILCGK-VPRDEAAPWFWSDQYEIGLKMVGLSEGYDR 349
Query: 368 LFGDNDLASATHKFGTYWIKDGKVVGV 394
+ LA F ++++ +V+ V
Sbjct: 350 IIVRGSLAQP--DFSVFYLQGDRVLAV 374
>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
pdb|3LB8|B Chain B, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
Length = 436
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 105/387 (27%), Positives = 171/387 (44%), Gaps = 21/387 (5%)
Query: 9 VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHV 68
VI+G G++ A G + G + ++ V P+ P LSKAYL + TA
Sbjct: 7 VIVGTGLAGVEVAFGLRASGWE-GNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRT 65
Query: 69 CVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLR 128
P+ Y + I+L+ T++ + + ++ + G Y LV+ATG
Sbjct: 66 ----------PDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRP 115
Query: 129 LTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNID 188
L A N YLR ++DA+ + YIGLE++A N+
Sbjct: 116 LPVASGAVGKANNFRYLRTLEDAECI--RRQLIADNRLVVIGGGYIGLEVAATAIKANMH 173
Query: 189 VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE-VKEVKLKDG 247
V+++ + R+ ++AFYE + G+ I GT GF + D + V V +DG
Sbjct: 174 VTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDG 233
Query: 248 RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYR 307
L AD+V+ G+G P L + GI ++ +TS + AVGD A F +LY
Sbjct: 234 TRLPADLVIAGIGLIPNCELASAAGLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQLYD 293
Query: 308 EMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTV 367
R+E V +A EQA K I A GK V + P+F+S +++ + G + G
Sbjct: 294 RWVRIESVPNA---LEQARK-IAAILCGK-VPRDEAAPWFWSDQYEIGLKMVGLSEGYDR 348
Query: 368 LFGDNDLASATHKFGTYWIKDGKVVGV 394
+ LA F ++++ +V+ V
Sbjct: 349 IIVRGSLAQP--DFSVFYLQGDRVLAV 373
>pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
Length = 408
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 105/397 (26%), Positives = 175/397 (44%), Gaps = 37/397 (9%)
Query: 1 MAEKSFK--YVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPE 58
M++++ K V+LG G+++ E + G + G + ++ EA PY+RP LSK ++
Sbjct: 1 MSQEALKAPVVVLGAGLASVSFVAELRQAGYQ-GLITVVGDEAERPYDRPPLSKDFMA-H 58
Query: 59 GTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQIL 118
G A E++ + + +E +L D + T+ + G Y L
Sbjct: 59 GDA-------------EKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTL 105
Query: 119 VIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLEL 178
V+ATG+ L +GA + LR ++DA ++ IGLEL
Sbjct: 106 VLATGAAPRALPTL--QGA-TMPVHTLRTLEDARRI--QAGLRPQSRLLIVGGGVIGLEL 160
Query: 179 SAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE 238
+A + + VS+V +P M R A +A F Y+A +G+ + F + G
Sbjct: 161 AATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDL-------RFERSVTGS 213
Query: 239 VKEV-KLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGD 297
V V L DG + AD+VVVG+G +L + GI D + +T+ DVYA+GD
Sbjct: 214 VDGVVLLDDGTRIAADMVVVGIGVLANDALARAAGLACDDGIFVDAYGRTTCPDVYALGD 273
Query: 298 VATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQ 357
V L R+E +A+ + ++ T GY LP+++S L Q
Sbjct: 274 VTRQRNPLSGRFERIETWSNAQNQGIAVARHLV----DPTAPGYAELPWYFSDQGALRIQ 329
Query: 358 FYGDNVGD-TVLFGDNDLASATHKFGTYWIKDGKVVG 393
G GD ++ G+ L + KF ++ G++VG
Sbjct: 330 VAGLASGDEEIVRGEVSLDAP--KFTLIELQKGRIVG 364
>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase,
Bpha4
pdb|1F3P|A Chain A, Ferredoxin Reductase (Bpha4)-Nadh Complex
pdb|2GQW|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2GR0|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (oxidized
Form, Nad+ Complex)
pdb|2GR1|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Hydroquinone)
pdb|2GR2|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2YVF|A Chain A, Crystal Structure Of Ferredoxin Reductase Bpha4
(Hydroquinone)
pdb|2YVG|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Blue-Semiquinone)
pdb|2YVJ|A Chain A, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
pdb|2YVJ|P Chain P, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
Length = 408
Score = 101 bits (252), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 105/397 (26%), Positives = 175/397 (44%), Gaps = 37/397 (9%)
Query: 1 MAEKSFK--YVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPE 58
M++++ K V+LG G+++ E + G + G + ++ EA PY+RP LSK ++
Sbjct: 1 MSQEALKAPVVVLGAGLASVSFVAELRQAGYQ-GLITVVGDEAERPYDRPPLSKDFMA-H 58
Query: 59 GTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQIL 118
G A E++ + + +E +L D + T+ + G Y L
Sbjct: 59 GDA-------------EKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTL 105
Query: 119 VIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLEL 178
V+ATG+ L +GA + LR ++DA ++ IGLEL
Sbjct: 106 VLATGAAPRALPTL--QGA-TMPVHTLRTLEDARRI--QAGLRPQSRLLIVGGGVIGLEL 160
Query: 179 SAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE 238
+A + + VS+V +P M R A +A F Y+A +G+ + F + G
Sbjct: 161 AATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDL-------RFERSVTGS 213
Query: 239 VKEV-KLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGD 297
V V L DG + AD+VVVG+G +L + GI D + +T+ DVYA+GD
Sbjct: 214 VDGVVLLDDGTRIAADMVVVGIGVLANDALARAAGLACDDGIFVDAYGRTTCPDVYALGD 273
Query: 298 VATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQ 357
V L R+E +A+ + ++ T GY LP+++S L Q
Sbjct: 274 VTRQRNPLSGRFERIETWSNAQNQGIAVARHLV----DPTAPGYAELPWYWSDQGALRIQ 329
Query: 358 FYGDNVGD-TVLFGDNDLASATHKFGTYWIKDGKVVG 393
G GD ++ G+ L + KF ++ G++VG
Sbjct: 330 VAGLASGDEEIVRGEVSLDAP--KFTLIELQKGRIVG 364
>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase
pdb|4EMI|A Chain A, Toluene Dioxygenase Reductase In Reduced State In Complex
With Nad+
pdb|4EMJ|A Chain A, Complex Between The Reductase And Ferredoxin Components Of
Toluene Dioxygenase
Length = 410
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 131/295 (44%), Gaps = 19/295 (6%)
Query: 10 ILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVC 69
I+G GV A+ +G + G +++I E PY+RP+LSKA L +G+ P
Sbjct: 7 IIGNGVGGFTTAQALRAEGFE-GRISLIGDEPHLPYDRPSLSKAVL--DGSLERPPILAE 63
Query: 70 VGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRL 129
+WY E I+++ E+ D+ ++T+ G +VIATGS R
Sbjct: 64 A---------DWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGS---RA 111
Query: 130 TDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDV 189
+ G+ + LR D L + IG E++ + + V
Sbjct: 112 RTMALPGSQLPGVVTLRTYGDVQVLRD--SWTSATRLLIVGGGLIGCEVATTARKLGLSV 169
Query: 190 SMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT 249
+++ + R+ I A+ G G+++ GT VGF+ +G++++V DGR+
Sbjct: 170 TILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFS--GEGQLEQVMASDGRS 227
Query: 250 LEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMK 304
AD ++ VG P L + G+ D T A V+AVGDVA++P++
Sbjct: 228 FVADSALICVGAEPADQLARQAGLACDRGVIVDHCGATLAKGVFAVGDVASWPLR 282
>pdb|3GD3|A Chain A, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
pdb|3GD3|B Chain B, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
pdb|3GD3|C Chain C, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
pdb|3GD3|D Chain D, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
Length = 535
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 98/362 (27%), Positives = 157/362 (43%), Gaps = 53/362 (14%)
Query: 31 PG-ELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLL----PEWY--- 82
PG + I+S++ PY RP LSK F + +G ER + P +Y
Sbjct: 77 PGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQWNGKERSIYFQPPSFYVSA 136
Query: 83 ------KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEG 136
+ G+ ++ ++V D+ + G ++ +IATG T L+ G
Sbjct: 137 QDLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAG 196
Query: 137 ADAKNIFYL-REIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL----KINNIDVSM 191
A+ K+ L R+I D L ++G EL+ AL + + I+V
Sbjct: 197 AEVKSRTTLFRKIGDFRAL--EKISREVKSITVIGGGFLGSELACALGRKSQASGIEVIQ 254
Query: 192 VYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLE 251
++PE M ++ ++ + +G+K++ A+ + G +KLKDGR +E
Sbjct: 255 LFPEKGNMGKILPQYLSNWTMEKVKREGVKVMPN--AIVQSVGVSGGRLLIKLKDGRKVE 312
Query: 252 ADIVVVGVGGRPLISLFKGQVAENKGGIETD-DF--FKTSAD-----DVYAVGDVATF-P 302
D +V VG P + L K GG+E D DF F+ +A+ +++ GD A F
Sbjct: 313 TDHIVTAVGLEPNVELAK------TGGLEIDSDFGGFRVNAELQARSNIWVAGDAACFYD 366
Query: 303 MKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDN 362
+KL R RRVEH DHA S A G+ +TG PY++ F W G +
Sbjct: 367 IKLGR--RRVEHHDHAVVSGRLA---------GENMTGAAK-PYWHQSMF---WSDLGPD 411
Query: 363 VG 364
VG
Sbjct: 412 VG 413
>pdb|1GV4|A Chain A, Murine Apoptosis-Inducing Factor (Aif)
pdb|1GV4|B Chain B, Murine Apoptosis-Inducing Factor (Aif)
Length = 528
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 98/362 (27%), Positives = 157/362 (43%), Gaps = 53/362 (14%)
Query: 31 PG-ELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLL----PEWY--- 82
PG + I+S++ PY RP LSK F + +G ER + P +Y
Sbjct: 72 PGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQWNGKERSIYFQPPSFYVSA 131
Query: 83 ------KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEG 136
+ G+ ++ ++V D+ + G ++ +IATG T L+ G
Sbjct: 132 QDLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAG 191
Query: 137 ADAKNIFYL-REIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL----KINNIDVSM 191
A+ K+ L R+I D L ++G EL+ AL + + I+V
Sbjct: 192 AEVKSRTTLFRKIGDFRAL--EKISREVKSITVIGGGFLGSELACALGRKSQASGIEVIQ 249
Query: 192 VYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLE 251
++PE M ++ ++ + +G+K++ A+ + G +KLKDGR +E
Sbjct: 250 LFPEKGNMGKILPQYLSNWTMEKVKREGVKVMPN--AIVQSVGVSGGRLLIKLKDGRKVE 307
Query: 252 ADIVVVGVGGRPLISLFKGQVAENKGGIETD-DF--FKTSAD-----DVYAVGDVATF-P 302
D +V VG P + L K GG+E D DF F+ +A+ +++ GD A F
Sbjct: 308 TDHIVTAVGLEPNVELAK------TGGLEIDSDFGGFRVNAELQARSNIWVAGDAACFYD 361
Query: 303 MKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDN 362
+KL R RRVEH DHA S A G+ +TG PY++ F W G +
Sbjct: 362 IKLGR--RRVEHHDHAVVSGRLA---------GENMTGAAK-PYWHQSMF---WSDLGPD 406
Query: 363 VG 364
VG
Sbjct: 407 VG 408
>pdb|3GD4|A Chain A, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine
Apoptosis Inducing Factor
pdb|3GD4|B Chain B, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine
Apoptosis Inducing Factor
Length = 511
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 98/362 (27%), Positives = 157/362 (43%), Gaps = 53/362 (14%)
Query: 31 PG-ELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLL----PEWY--- 82
PG + I+S++ PY RP LSK F + +G ER + P +Y
Sbjct: 53 PGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQWNGKERSIYFQPPSFYVSA 112
Query: 83 ------KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEG 136
+ G+ ++ ++V D+ + G ++ +IATG T L+ G
Sbjct: 113 QDLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAG 172
Query: 137 ADAKNIFYL-REIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL----KINNIDVSM 191
A+ K+ L R+I D L ++G EL+ AL + + I+V
Sbjct: 173 AEVKSRTTLFRKIGDFRAL--EKISREVKSITVIGGGFLGSELACALGRKSQASGIEVIQ 230
Query: 192 VYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLE 251
++PE M ++ ++ + +G+K++ A+ + G +KLKDGR +E
Sbjct: 231 LFPEKGNMGKILPQYLSNWTMEKVKREGVKVMPN--AIVQSVGVSGGRLLIKLKDGRKVE 288
Query: 252 ADIVVVGVGGRPLISLFKGQVAENKGGIETD-DF--FKTSAD-----DVYAVGDVATF-P 302
D +V VG P + L K GG+E D DF F+ +A+ +++ GD A F
Sbjct: 289 TDHIVTAVGLEPNVELAK------TGGLEIDSDFGGFRVNAELQARSNIWVAGDAACFYD 342
Query: 303 MKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDN 362
+KL R RRVEH DHA S A G+ +TG PY++ F W G +
Sbjct: 343 IKLGR--RRVEHHDHAVVSGRLA---------GENMTGAAK-PYWHQSMF---WSDLGPD 387
Query: 363 VG 364
VG
Sbjct: 388 VG 389
>pdb|4FDC|B Chain B, Crystal Structure Of The E493v Mutant Of Human Apoptosis
Inducing Factor (Aif)
Length = 514
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 99/364 (27%), Positives = 161/364 (44%), Gaps = 57/364 (15%)
Query: 31 PG-ELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLL----PEWY--- 82
PG + I+S++ PY RP LSK F + +G ER + P +Y
Sbjct: 53 PGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSA 112
Query: 83 ------KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEG 136
+ G+ ++ ++V+ D+ + G Y+ +IATG T L+ G
Sbjct: 113 QDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAG 172
Query: 137 ADAKNIFYL-REIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL----KINNIDVSM 191
A+ K+ L R+I D L ++G EL+ AL + +V
Sbjct: 173 AEVKSRTTLFRKIGDFRSL--EKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQ 230
Query: 192 VYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTV--AVGFTTNADGEVKEVKLKDGRT 249
++PE M ++ ++ + +G+K++ + +VG ++ G++ +KLKDGR
Sbjct: 231 LFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSS---GKLL-IKLKDGRK 286
Query: 250 LEADIVVVGVGGRPLISLFKGQVAENKGGIETD-DF--FKTSAD-----DVYAVGDVATF 301
+E D +V VG P + L K GG+E D DF F+ +A+ +++ GD A F
Sbjct: 287 VETDHIVAAVGLEPNVELAK------TGGLEIDSDFGGFRVNAELQARSNIWVAGDAACF 340
Query: 302 -PMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 360
+KL R RRVEH DHA S A G+ +TG PY++ F W G
Sbjct: 341 YDIKLGR--RRVEHHDHAVVSGRLA---------GENMTGAAK-PYWHQSMF---WSDLG 385
Query: 361 DNVG 364
+VG
Sbjct: 386 PDVG 389
>pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif)
Length = 493
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 99/364 (27%), Positives = 161/364 (44%), Gaps = 57/364 (15%)
Query: 31 PG-ELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLL----PEWY--- 82
PG + I+S++ PY RP LSK F + +G ER + P +Y
Sbjct: 35 PGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSA 94
Query: 83 ------KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEG 136
+ G+ ++ ++V+ D+ + G Y+ +IATG T L+ G
Sbjct: 95 QDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAG 154
Query: 137 ADAKNIFYL-REIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL----KINNIDVSM 191
A+ K+ L R+I D L ++G EL+ AL + +V
Sbjct: 155 AEVKSRTTLFRKIGDFRSL--EKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQ 212
Query: 192 VYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTV--AVGFTTNADGEVKEVKLKDGRT 249
++PE M ++ ++ + +G+K++ + +VG ++ G++ +KLKDGR
Sbjct: 213 LFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSS---GKLL-IKLKDGRK 268
Query: 250 LEADIVVVGVGGRPLISLFKGQVAENKGGIETD-DF--FKTSAD-----DVYAVGDVATF 301
+E D +V VG P + L K GG+E D DF F+ +A+ +++ GD A F
Sbjct: 269 VETDHIVAAVGLEPNVELAK------TGGLEIDSDFGGFRVNAELQARSNIWVAGDAACF 322
Query: 302 -PMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 360
+KL R RRVEH DHA S A G+ +TG PY++ F W G
Sbjct: 323 YDIKLGR--RRVEHHDHAVVSGRLA---------GENMTGAAK-PYWHQSMF---WSDLG 367
Query: 361 DNVG 364
+VG
Sbjct: 368 PDVG 371
>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
pdb|2CDU|B Chain B, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
Length = 452
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 101/227 (44%), Gaps = 13/227 (5%)
Query: 79 PEWYKEKGIELILSTEIVRADIASKT-----LLSATGLIFKYQILVIATGSTVLRLTDFG 133
PE G + + ++ D +KT L++ Y L++ TGS + T
Sbjct: 65 PEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGS---KPTVPP 121
Query: 134 VEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVY 193
+ G D+ ++ + +DA KL E YIG EL+ A N +V+++
Sbjct: 122 IPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSG--YIGAELAEAYSNQNYNVNLID 179
Query: 194 PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEAD 253
+ + F + Y G+ ++ G+ F D E+ K DG+ +++D
Sbjct: 180 GHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFE-EVDDEII-TKTLDGKEIKSD 237
Query: 254 IVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVA 299
I ++ +G RP L KG+VA + G I TD++ +S D++A GD A
Sbjct: 238 IAILCIGFRPNTELLKGKVAMLDNGAIITDEYMHSSNRDIFAAGDSA 284
>pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus
Pfu-1140779- 001
Length = 367
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 126/300 (42%), Gaps = 42/300 (14%)
Query: 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSK--AYLFPEGTARLP 64
K VI+G G G+ E AKQ + E+ +I KE V Y +P LS A P
Sbjct: 10 KVVIVGNG-PGGF---ELAKQLSQTYEVTVIDKEPVPYYSKPMLSHYIAGFIPRN----- 60
Query: 65 GFHVCVGSGGERLLP---EWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIA 121
RL P +WY+++GIE+ L+ E D K +++ G + Y LV+A
Sbjct: 61 -----------RLFPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVITEKGEV-PYDTLVLA 108
Query: 122 TGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAA 181
TG+ R + ++G + + LR I DAD++ E LEL+
Sbjct: 109 TGA---RAREPQIKGKEY--LLTLRTIFDADRIKESIENSGEAIIIGGGFIG--LELAGN 161
Query: 182 LKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 241
L V +++ + +++ + G+K + + N +G
Sbjct: 162 LAEAGYHVKLIHRGAMFLG--LDEELSNMIKDMLEETGVKFFLNSELL--EANEEG---- 213
Query: 242 VKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATF 301
L + +E + + +G P + L + GI DD F+TSA DVYA+GD A +
Sbjct: 214 -VLTNSGFIEGKVKICAIGIVPNVDLARRSGIHTGRGILIDDNFRTSAKDVYAIGDCAEY 272
>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 112/264 (42%), Gaps = 28/264 (10%)
Query: 80 EWYKEKGIELILSTEIV-----RADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGV 134
E + +G+ + +TEI + K L+S + Y L+I+ G+ L +
Sbjct: 64 EKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFEL---DI 120
Query: 135 EGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL-----KINNIDV 189
G D NI+ +R A KL + YIG+E + A K+ ID+
Sbjct: 121 PGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDI 180
Query: 190 SMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN---ADGEVKEVKLKD 246
+ P + + FT E AN T+A G T DG V++V + D
Sbjct: 181 -LDRPLGVYLDKEFTD---VLTEEMEANNI------TIATGETVERYEGDGRVQKV-VTD 229
Query: 247 GRTLEADIVVVGVGGRPLISLFKGQVAENKGG-IETDDFFKTSADDVYAVGDVATFPMKL 305
+AD+VVV VG RP + KG + + G I+TD++ +TS DV+AVGD
Sbjct: 230 KNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNP 289
Query: 306 YREMRRVEHVDHARKSAEQAVKTI 329
+ +ARK AVK +
Sbjct: 290 ADTEVNIALATNARKQGRFAVKNL 313
>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 112/264 (42%), Gaps = 28/264 (10%)
Query: 80 EWYKEKGIELILSTEIV-----RADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGV 134
E + +G+ + +TEI + K L+S + Y L+I+ G+ L +
Sbjct: 64 EKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFEL---DI 120
Query: 135 EGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL-----KINNIDV 189
G D NI+ +R A KL + YIG+E + A K+ ID+
Sbjct: 121 PGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDI 180
Query: 190 SMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN---ADGEVKEVKLKD 246
+ P + + FT E AN T+A G T DG V++V + D
Sbjct: 181 -LDRPLGVYLDKEFTD---VLTEEMEANNI------TIATGETVERYEGDGRVQKV-VTD 229
Query: 247 GRTLEADIVVVGVGGRPLISLFKGQVAENKGG-IETDDFFKTSADDVYAVGDVATFPMKL 305
+AD+VVV VG RP + KG + + G I+TD++ +TS DV+AVGD
Sbjct: 230 KNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNP 289
Query: 306 YREMRRVEHVDHARKSAEQAVKTI 329
+ +ARK AVK +
Sbjct: 290 ADTEVNIALATNARKQGRFAVKNL 313
>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 112/264 (42%), Gaps = 28/264 (10%)
Query: 80 EWYKEKGIELILSTEIV-----RADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGV 134
E + +G+ + +TEI + K L+S + Y L+I+ G+ L +
Sbjct: 64 EKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFEL---DI 120
Query: 135 EGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL-----KINNIDV 189
G D NI+ +R A KL + YIG+E + A K+ ID+
Sbjct: 121 PGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDI 180
Query: 190 SMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN---ADGEVKEVKLKD 246
+ P + + FT E AN T+A G T DG V++V + D
Sbjct: 181 -LDRPLGVYLDKEFTD---VLTEEMEANNI------TIATGETVERYEGDGRVQKV-VTD 229
Query: 247 GRTLEADIVVVGVGGRPLISLFKGQVAENKGG-IETDDFFKTSADDVYAVGDVATFPMKL 305
+AD+VVV VG RP + KG + + G I+TD++ +TS DV+AVGD
Sbjct: 230 KNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNP 289
Query: 306 YREMRRVEHVDHARKSAEQAVKTI 329
+ +ARK AVK +
Sbjct: 290 ADTEVNIALATNARKQGRFAVKNL 313
>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 112/264 (42%), Gaps = 28/264 (10%)
Query: 80 EWYKEKGIELILSTEIV-----RADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGV 134
E + +G+ + +TEI + K L+S + Y L+I+ G+ L +
Sbjct: 64 EKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFEL---DI 120
Query: 135 EGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL-----KINNIDV 189
G D NI+ +R A KL + YIG+E + A K+ ID+
Sbjct: 121 PGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDI 180
Query: 190 SMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN---ADGEVKEVKLKD 246
+ P + + FT E AN T+A G T DG V++V + D
Sbjct: 181 -LDRPLGVYLDKEFTD---VLTEEMEANNI------TIATGETVERYEGDGRVQKV-VTD 229
Query: 247 GRTLEADIVVVGVGGRPLISLFKGQVAENKGG-IETDDFFKTSADDVYAVGDVATFPMKL 305
+AD+VVV VG RP + KG + + G I+TD++ +TS DV+AVGD
Sbjct: 230 KNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNP 289
Query: 306 YREMRRVEHVDHARKSAEQAVKTI 329
+ +ARK AVK +
Sbjct: 290 ADTEVNIALATNARKQGRFAVKNL 313
>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid
pdb|1NPX|A Chain A, Structure Of Nadh Peroxidase From Streptococcus Faecalis
10c1 Refined At 2.16 Angstroms Resolution
pdb|2NPX|A Chain A, Nadh Binding Site And Catalysis Of Nadh Peroxidase
Length = 447
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 112/264 (42%), Gaps = 28/264 (10%)
Query: 80 EWYKEKGIELILSTEIV-----RADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGV 134
E + +G+ + +TEI + K L+S + Y L+I+ G+ L +
Sbjct: 64 EKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFEL---DI 120
Query: 135 EGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL-----KINNIDV 189
G D NI+ +R A KL + YIG+E + A K+ ID+
Sbjct: 121 PGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDI 180
Query: 190 SMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN---ADGEVKEVKLKD 246
+ P + + FT E AN T+A G T DG V++V + D
Sbjct: 181 -LDRPLGVYLDKEFTD---VLTEEMEANNI------TIATGETVERYEGDGRVQKV-VTD 229
Query: 247 GRTLEADIVVVGVGGRPLISLFKGQVAENKGG-IETDDFFKTSADDVYAVGDVATFPMKL 305
+AD+VVV VG RP + KG + + G I+TD++ +TS DV+AVGD
Sbjct: 230 KNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNP 289
Query: 306 YREMRRVEHVDHARKSAEQAVKTI 329
+ +ARK AVK +
Sbjct: 290 ADTEVNIALATNARKQGRFAVKNL 313
>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m
Length = 447
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 121/285 (42%), Gaps = 35/285 (12%)
Query: 80 EWYKEKGIELILSTEIV-----RADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGV 134
E + +G+ + +TEI + K L+S + Y L+I+ G+ L +
Sbjct: 64 EKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFEL---DI 120
Query: 135 EGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL-----KINNIDV 189
G D NI+ +R A KL + YIG+E + A K+ ID+
Sbjct: 121 PGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDI 180
Query: 190 SMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN---ADGEVKEVKLKD 246
+ P + + FT E AN T+A G T DG V++V + D
Sbjct: 181 -LDRPLGVYLDKEFTD---VLTEEMEANNI------TIATGETVERYEGDGRVQKV-VTD 229
Query: 247 GRTLEADIVVVGVGGRPLISLFKGQVAENKGG-IETDDFFKTSADDVYAVGDV------- 298
+AD+VVV VG RP + KG + + G I+TD++ +TS DV+AVGD
Sbjct: 230 KNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNP 289
Query: 299 ATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDY 343
A + + ++ A K+ E+ VK +G + +DY
Sbjct: 290 ADTEVNIALATNAMKQGRFAVKNLEEPVKPFPGVQGSSGLAVFDY 334
>pdb|2QAE|A Chain A, Crystal Structure Analysis Of Trypanosoma Cruzi Lipoamide
Dehydrogenase
pdb|2QAE|B Chain B, Crystal Structure Analysis Of Trypanosoma Cruzi Lipoamide
Dehydrogenase
Length = 468
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 68/131 (51%), Gaps = 6/131 (4%)
Query: 174 IGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233
IGLEL + +V++V P C P L A N+ +K + T VG T
Sbjct: 185 IGLELGSVWARLGAEVTVVEFAPRCAPTLDEDVTNALVGALAKNEKMKFMTSTKVVGGTN 244
Query: 234 NADGEVKEVKLKDGR--TLEADIVVVGVGGRPL---ISLFKGQVAEN-KGGIETDDFFKT 287
N D EV+ K+G+ T+ + ++V VG RP + L K VA+N +G ++ D F+T
Sbjct: 245 NGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFET 304
Query: 288 SADDVYAVGDV 298
S DVYA+GDV
Sbjct: 305 SIPDVYAIGDV 315
>pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From
Clostridium Acetobutylicum
Length = 385
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 127/299 (42%), Gaps = 38/299 (12%)
Query: 4 KSFKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKEAVAPYERPALSKAYLFPEGTAR 62
KS K +ILG G AG++A AK + K ++ +I+ E PY RP L+ E A+
Sbjct: 8 KSTKILILGAG-PAGFSA---AKAALGKCDDITMINSEKYLPYYRPRLN------EIIAK 57
Query: 63 LPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIAT 122
+ + WY++ I++I S D +K + +G KY+ L+IA+
Sbjct: 58 NKSIDDILIKKND-----WYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIAS 112
Query: 123 GSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL 182
GS ++ V AD IF L DDA K+ + +EL+ A+
Sbjct: 113 GSIANKIK---VPHADE--IFSLYSYDDALKIKDECKNKGKAFIIGGGILG--IELAQAI 165
Query: 183 KINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEV 242
+ S+ + + R D F + GIKI TN++ E
Sbjct: 166 IDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKI---------YTNSNFE---- 212
Query: 243 KLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATF 301
+ G + + V+ VG +P + K +K GI +D +TS D+YA GDVA F
Sbjct: 213 --EMGDLIRSSCVITAVGVKPNLDFIKDTEIASKRGILVNDHMETSIKDIYACGDVAEF 269
>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGC|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGE|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGE|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 78/308 (25%), Positives = 128/308 (41%), Gaps = 32/308 (10%)
Query: 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLP 64
S YVI+GG +AG +A A Q V+ E A + L K ++ LP
Sbjct: 36 SMNYVIIGGD-AAGMSA---AMQIVRNDENANVV----------TLEKGEIYSYAQCGLP 81
Query: 65 GFHVCVGSGGERLLP---EWYKEK-GIELILSTEIVRADIASKTLLSATGLI-----FKY 115
+ E+L+ + +++K GI+ + E+ + D K + + F Y
Sbjct: 82 YVISGAIASTEKLIARNVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSY 141
Query: 116 QILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIG 175
L+IATG +R EG D + + L+ I DA+++++ IG
Sbjct: 142 DRLLIATG---VRPVMPEWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIG 198
Query: 176 LELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA 235
LE++ V M+ + ++ D+A + I+I+ F N
Sbjct: 199 LEMAETFVELGKKVRMIERNDH-IGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNE 257
Query: 236 DGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQ--VAENKGGIETDDFFKTSADDVY 293
E E D T +AD+V+V VG +P +G +KG IE + + +T+ DVY
Sbjct: 258 RVEAVET---DKGTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVY 314
Query: 294 AVGDVATF 301
A GD AT
Sbjct: 315 AAGDCATH 322
>pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine
Nucleotide-Disulphide Oxidoreductase From Desulfovibrio
Vulgaris
Length = 472
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 100/233 (42%), Gaps = 14/233 (6%)
Query: 79 PEWYK-EKGIELILSTEIVRADIASKT-----LLSATGLIFKYQILVIATGSTVLRLTDF 132
PE+++ K +E ++ T D A+ T L + KY LV+A GS R
Sbjct: 72 PEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPP-- 129
Query: 133 GVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL-KINNIDVSM 191
VEG D + + +D+A+ + +IGLE++ +L + ID ++
Sbjct: 130 -VEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTV 188
Query: 192 VYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLE 251
V MP + ++ + + G V +G+V V + D RTL+
Sbjct: 189 VELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLE-GENGKVARV-ITDKRTLD 246
Query: 252 ADIVVVGVGGRPLISLFK--GQVAENKGGIETDDFFKTSADDVYAVGDVATFP 302
AD+V++ G P L + G + +G I D +TS D++A GD T P
Sbjct: 247 ADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIP 299
>pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MO9|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MOK|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|C Chain C, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|D Chain D, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|2C3D|A Chain A, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme M
Oxidoreductase Carboxylase With A Coenzyme M Disulfide
Bound At The Active Site
pdb|2C3D|B Chain B, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme M
Oxidoreductase Carboxylase With A Coenzyme M Disulfide
Bound At The Active Site
pdb|2C3C|A Chain A, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed Disulfide
Between Coenzyme M And Nadph-Dependent Oxidoreductase 2-
Ketopropyl Coenzyme M Carboxylase
pdb|2C3C|B Chain B, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed Disulfide
Between Coenzyme M And Nadph-Dependent Oxidoreductase 2-
Ketopropyl Coenzyme M Carboxylase
pdb|3Q6J|A Chain A, Structural Basis For Carbon Dioxide Binding By
2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE
pdb|3Q6J|B Chain B, Structural Basis For Carbon Dioxide Binding By
2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE
Length = 523
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 77/318 (24%), Positives = 131/318 (41%), Gaps = 39/318 (12%)
Query: 50 LSKAYLFPEGTARLPGFHVCVG------SGGERLLPEWYKEK-GIELILSTEIVRADIAS 102
S Y FP+ T ++ G V +G ++ KE+ +E IL+ A +
Sbjct: 106 FSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCP---AKVID 162
Query: 103 KTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXX 162
+ A G +FK + L++A G+ L V G +AK +F D LVE
Sbjct: 163 NHTVEAAGKVFKAKNLILAVGAGPGTLD---VPGVNAKGVF------DHATLVEELDYEP 213
Query: 163 XXXXXXXXXXYIGLELSAALK-INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIK 221
+E V +V EP + + + A+ +G++
Sbjct: 214 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIK--DNETRAYVLDRMKEQGME 271
Query: 222 IIKGTVAVGFTTNADGEVKEV--KLKDGRT-LEADIVVVGVGGRPL---ISLFKGQVAEN 275
II G+ +A+G V+ V +G +E D V +G+G +P ++ G
Sbjct: 272 IISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGP 331
Query: 276 KGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 335
KG + +++ +TS +VYAVGD+ PM++++ ARKS A + +M +
Sbjct: 332 KGEVLVNEYLQTSVPNVYAVGDLIGGPMEMFK----------ARKSGCYAARNVMGEKIS 381
Query: 336 KTVTGY-DYLPYFYSRAF 352
T Y D+L Y +F
Sbjct: 382 YTPKNYPDFLHTHYEVSF 399
>pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas
Aeruginosa.
pdb|2V3B|A Chain A, Crystal Structure Of The Electron Transfer Complex
Rubredoxin - Rubredoxin Reductase From Pseudomonas
Aeruginosa
Length = 384
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 81/188 (43%), Gaps = 11/188 (5%)
Query: 114 KYQILVIATGSTVLRLTDFGVEGADAKNIFY-LREIDDADKLVEXXXXXXXXXXXXXXXX 172
+Y+ LV+A G+ +R+ VEG DA++ Y + +++D + +
Sbjct: 101 RYRDLVLAWGAEPIRVP---VEG-DAQDALYPINDLEDYARFRQAAAGKRRVLLLGAG-- 154
Query: 173 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232
IG E + L + +V P MP L A + G++ G V
Sbjct: 155 LIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLK 214
Query: 233 TNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISL-FKGQVAENKGGIETDDFFKTSADD 291
GE E L DG + D+VV VG RP L F +A N+ GI D +TS +
Sbjct: 215 KA--GEGLEAHLSDGEVIPCDLVVSAVGLRPRTELAFAAGLAVNR-GIVVDRSLRTSHAN 271
Query: 292 VYAVGDVA 299
+YA+GD A
Sbjct: 272 IYALGDCA 279
>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICR|B Chain B, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICS|A Chain A, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICS|B Chain B, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICT|A Chain A, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
pdb|3ICT|B Chain B, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
Length = 588
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 91/187 (48%), Gaps = 13/187 (6%)
Query: 115 YQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYI 174
Y +L+++ G+ + + G+E +AK +F LR + D D++ +I
Sbjct: 141 YDVLILSPGAKPIVPSIPGIE--EAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFI 198
Query: 175 GLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII--KGTVAVGFT 232
G+E L+ I+V++V P + + AA+ + N ++++ G A+
Sbjct: 199 GVEXVENLRERGIEVTLVEXANQVXPPI-DYEXAAYVHEHXKNHDVELVFEDGVDAL--- 254
Query: 233 TNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQ--VAENKGGIETDDFFKTSAD 290
+G V V+LK G ++ D +++ +G +P SL KG +G I+ ++ F+TS
Sbjct: 255 -EENGAV--VRLKSGSVIQTDXLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSDP 311
Query: 291 DVYAVGD 297
+YA+GD
Sbjct: 312 HIYAIGD 318
>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
pdb|3NTD|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
Length = 565
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 104/244 (42%), Gaps = 29/244 (11%)
Query: 79 PEWYKEK-GIELILSTEIVRADIASK-----TLLSATGLIFKYQILVIATGSTVLRLTDF 132
PE +K + +E+ + E+V D A+K LL + Y L+++ G+ +
Sbjct: 64 PESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPP-- 121
Query: 133 GVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMV 192
+ G D LR I D D++++ +IGLE+ +L I +++
Sbjct: 122 -IPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLL 180
Query: 193 YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT--------VAVGFTTNADGE------ 238
M + ++A F ++G+ + GT V ++A GE
Sbjct: 181 ELADQVMTPV-DREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQH 239
Query: 239 VK---EVKLKDGRTLEADIVVVGVGGRPLISLFK--GQVAENKGGIETDDFFKTSADDVY 293
+K + L +G LE D++++ +G RP L + G GGI+ + +TS +Y
Sbjct: 240 IKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDPAIY 299
Query: 294 AVGD 297
AVGD
Sbjct: 300 AVGD 303
>pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide
Dehydrogenase Complexed With Nad+ At 2.45 Angstroms
Resolution
Length = 458
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 69/150 (46%), Gaps = 14/150 (9%)
Query: 173 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232
YIGLEL A + VS+V +P + +++ A GI + G G+
Sbjct: 181 YIGLELGIAYRKLGAQVSVVEARERILPT-YDSELTAPVAESLKKLGIALHLGHSVEGYE 239
Query: 233 TNA----DGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE---NKGGIETDDFF 285
DG+ +++L EAD V+V VG RP F + + N I D+
Sbjct: 240 NGCLLANDGKGGQLRL------EADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAIDERC 293
Query: 286 KTSADDVYAVGDVATFPMKLYREMRRVEHV 315
+TS +V+A+GDVA PM +R M + E V
Sbjct: 294 QTSMHNVWAIGDVAGEPMLAHRAMAQGEMV 323
>pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGB|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 93/228 (40%), Gaps = 24/228 (10%)
Query: 86 GIELILSTEIVRADIASKTLLSATGLI-----FKYQILVIATGSTVLRLTDFGVEGADAK 140
GI+ + E+ + D K + + F Y L+IATG +R EG D +
Sbjct: 107 GIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATG---VRPVXPEWEGRDLQ 163
Query: 141 NIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL-----KINNIDVSMVYPE 195
+ L+ I DA+++++ IGLE + K+ I+ +
Sbjct: 164 GVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEXAETFVELGKKVRXIERND---- 219
Query: 196 PWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIV 255
+ ++ D A + I+I+ F N E E D T +AD+V
Sbjct: 220 --HIGTIYDGDXAEYIYKEADKHHIEILTNENVKAFKGNERVEAVET---DKGTYKADLV 274
Query: 256 VVGVGGRPLISLFKGQ--VAENKGGIETDDFFKTSADDVYAVGDVATF 301
+V VG +P +G +KG IE + + +T+ DVYA GD AT
Sbjct: 275 LVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYXQTNVQDVYAAGDCATH 322
>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
Length = 455
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 78/183 (42%), Gaps = 24/183 (13%)
Query: 174 IGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233
IGLEL +V ++ +P + +++ E + +G+ I G
Sbjct: 178 IGLELGVVWHRLGAEVIVLEYMDRILPTM-DLEVSRAAERVFKKQGLTIRTGVRVTAVVP 236
Query: 234 NADGEVKEVKLKDGRTLEADIVVVGVGGRPL---ISLFK-GQVAENKGGIETDDFFKTSA 289
A G V+L+ G LEAD V+V VG RP +SL G + +G I D+ +T
Sbjct: 237 EAKG--ARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRTRV 294
Query: 290 DDVYAVGDVATFPMKLYRE-----------MRRVEHVDHARKSAEQAVKTIMATEGGKTV 338
+YA+GDV PM ++ +R HVD+ QA+ +++ T
Sbjct: 295 PHIYAIGDVVRGPMLAHKASEEGIAAVEHMVRGFGHVDY------QAIPSVVYTHPEIAA 348
Query: 339 TGY 341
GY
Sbjct: 349 VGY 351
>pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|B Chain B, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|C Chain C, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|D Chain D, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOV|A Chain A, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|B Chain B, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|C Chain C, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|D Chain D, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOW|A Chain A, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|B Chain B, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|C Chain C, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|D Chain D, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WP5|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP6|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WPC|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPE|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPF|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
Length = 495
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 218 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS-LFKGQVA--- 273
GI+I+ + N DG K V + G+TL+ D+V++ +G P + L G V
Sbjct: 248 NGIEIMTNENPAKVSLNTDGS-KHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKL 306
Query: 274 ENKGGIETDDFFKTSADDVYAVGDV 298
KGG++ D+F +T+ ++YA+GD+
Sbjct: 307 TPKGGVQVDEFSRTNVPNIYAIGDI 331
>pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei
pdb|2WBA|B Chain B, Properties Of Trypanothione Reductase From T. Brucei
Length = 492
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 218 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS-LFKGQVA--- 273
GI+I+ + N DG K V + G+TL+ D+V++ +G P + L G V
Sbjct: 245 NGIEIMTNENPAKVSLNTDGS-KHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKL 303
Query: 274 ENKGGIETDDFFKTSADDVYAVGDV 298
KGG++ D+F +T+ ++YA+GD+
Sbjct: 304 TPKGGVQVDEFSRTNVPNIYAIGDI 328
>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|B Chain B, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|C Chain C, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|D Chain D, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
Length = 491
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 218 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL---ISLFKGQVAE 274
GI+I+ NADG K V + G+ ++ D+V++ +G P + L V
Sbjct: 245 NGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMMAIGRSPRTKDLQLQNAGVMI 303
Query: 275 NKGGIETDDFFKTSADDVYAVGDVATFPM 303
GG++ D++ +T+ ++YA+GDV M
Sbjct: 304 KNGGVQVDEYSRTNVSNIYAIGDVTNRVM 332
>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
pdb|1GXF|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
Length = 492
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 218 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL---ISLFKGQVAE 274
GI+I+ NADG K V + G+ ++ D+V++ +G P + L V
Sbjct: 246 NGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMMAIGRSPRTKDLQLQNAGVMI 304
Query: 275 NKGGIETDDFFKTSADDVYAVGDVATFPM 303
GG++ D++ +T+ ++YA+GDV M
Sbjct: 305 KNGGVQVDEYSRTNVSNIYAIGDVTNRVM 333
>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
pdb|1BZL|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
Length = 486
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 218 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL---ISLFKGQVAE 274
GI+I+ NADG K V + G+ ++ D+V++ +G P + L V
Sbjct: 245 NGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMMAIGRSPRTKDLQLQNAGVMI 303
Query: 275 NKGGIETDDFFKTSADDVYAVGDVATFPM 303
GG++ D++ +T+ ++YA+GDV M
Sbjct: 304 KNGGVQVDEYSRTNVSNIYAIGDVTNRVM 332
>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
pdb|1AOG|B Chain B, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
Length = 485
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 218 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL---ISLFKGQVAE 274
GI+I+ NADG K V + G+ ++ D+V++ +G P + L V
Sbjct: 244 NGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMMAIGRSPRTKDLQLQNAGVMI 302
Query: 275 NKGGIETDDFFKTSADDVYAVGDVATFPM 303
GG++ D++ +T+ ++YA+GDV M
Sbjct: 303 KNGGVQVDEYSRTNVSNIYAIGDVTNRVM 331
>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
pdb|3NTA|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
Length = 574
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 102/245 (41%), Gaps = 31/245 (12%)
Query: 79 PEWYKEK-GIELILSTEIVRADIASK-----TLLSATGLIFKYQILVIATGSTVLRLTDF 132
PE +K + +E+ + E+V D A+K LL + Y L+++ G+ +
Sbjct: 64 PESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPP-- 121
Query: 133 GVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMV 192
+ G D LR I D D++++ +IGLE +L I +++
Sbjct: 122 -IPGVDNPLTHSLRNIPDXDRILQTIQXNNVEHATVVGGGFIGLEXXESLHHLGIKTTLL 180
Query: 193 -YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT--------VAVGFTTNADGE----- 238
+ P + A F ++G+ + GT V ++A GE
Sbjct: 181 ELADQVXTP--VDREXAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQ 238
Query: 239 -VK---EVKLKDGRTLEADIVVVGVGGRPLISLFK--GQVAENKGGIETDDFFKTSADDV 292
+K + L +G LE D+++ +G RP L + G GGI+ + +TS +
Sbjct: 239 HIKGHLSLTLSNGELLETDLLIXAIGVRPETQLARDAGLAIGELGGIKVNAXXQTSDPAI 298
Query: 293 YAVGD 297
YAVGD
Sbjct: 299 YAVGD 303
>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
pdb|3NT6|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
Length = 574
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 102/245 (41%), Gaps = 31/245 (12%)
Query: 79 PEWYKEK-GIELILSTEIVRADIASK-----TLLSATGLIFKYQILVIATGSTVLRLTDF 132
PE +K + +E+ + E+V D A+K LL + Y L+++ G+ +
Sbjct: 64 PESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPP-- 121
Query: 133 GVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMV 192
+ G D LR I D D++++ +IGLE +L I +++
Sbjct: 122 -IPGVDNPLTHSLRNIPDXDRILQTIQXNNVEHATVVGGGFIGLEXXESLHHLGIKTTLL 180
Query: 193 -YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT--------VAVGFTTNADGE----- 238
+ P + A F ++G+ + GT V ++A GE
Sbjct: 181 ELADQVXTP--VDREXAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQ 238
Query: 239 -VK---EVKLKDGRTLEADIVVVGVGGRPLISLFK--GQVAENKGGIETDDFFKTSADDV 292
+K + L +G LE D+++ +G RP L + G GGI+ + +TS +
Sbjct: 239 HIKGHLSLTLSNGELLETDLLIXAIGVRPETQLARDAGLAIGELGGIKVNAXXQTSDPAI 298
Query: 293 YAVGD 297
YAVGD
Sbjct: 299 YAVGD 303
>pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|B Chain B, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|C Chain C, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|D Chain D, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
Length = 470
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 16/146 (10%)
Query: 173 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232
YIGLE+ + +V++V +P + A+I ++ +G+K T VG
Sbjct: 187 YIGLEMGSVWGRIGSEVTVVEFASEIVPTM-DAEIRKQFQRSLEKQGMKFKLKTKVVGVD 245
Query: 233 TNADGEVKEVKLKDG---RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDF----- 284
T+ DG V+ G +EAD+V+V G P F + +K G+ETD
Sbjct: 246 TSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTP----FTSGLNLDKIGVETDKLGRILV 301
Query: 285 ---FKTSADDVYAVGDVATFPMKLYR 307
F T+ VYA+GDV PM ++
Sbjct: 302 NERFSTNVSGVYAIGDVIPGPMLAHK 327
>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
pdb|1LPF|B Chain B, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
Length = 477
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 58/137 (42%), Gaps = 27/137 (19%)
Query: 224 KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP----LISLFKGQVAENKGGI 279
K V V FT +A+GE KE D ++V VG RP L++ G + +G I
Sbjct: 251 KKQVTVTFT-DANGEQKET---------FDKLIVAVGRRPVTTDLLAADSGVTLDERGFI 300
Query: 280 ETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVT 339
DD KTS V+A+GDV M A K++E+ V G K
Sbjct: 301 YVDDHCKTSVPGVFAIGDVVRGAML-------------AHKASEEGVMVAERIAGHKAQM 347
Query: 340 GYDYLPYFYSRAFDLSW 356
YD +P +++W
Sbjct: 348 NYDLIPSVIYTHPEIAW 364
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 6/140 (4%)
Query: 173 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232
YIG+EL A V+++ + F +AA + KG++++ +A G
Sbjct: 180 YIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVEVVTNALAKGAE 238
Query: 233 TNADGEVKEVKLK-DGRTLEADIVVVGVGGRPLISLFK----GQVAENKGGIETDDFFKT 287
DG + + +T++AD V+V VG RP G N+G IE D +T
Sbjct: 239 EREDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRT 298
Query: 288 SADDVYAVGDVATFPMKLYR 307
S +++A+GD+ P ++
Sbjct: 299 SVPNIFAIGDIVPGPALAHK 318
>pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1V59|A Chain A, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
pdb|1V59|B Chain B, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
Length = 478
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 67/160 (41%), Gaps = 22/160 (13%)
Query: 206 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT-----LEADIVVVGVG 260
++A + + +G+ T + N D V E+ ++D +T LEA++++V VG
Sbjct: 225 EVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVG 284
Query: 261 GRPLISLFK----GQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVD 316
RP I+ G + +G + DD F + + VGDV PM
Sbjct: 285 RRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPML------------ 332
Query: 317 HARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSW 356
A K+ E+ + + + G Y+ +P +++W
Sbjct: 333 -AHKAEEEGIAAVEMLKTGHGHVNYNNIPSVMYSHPEVAW 371
>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BC1|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BCP|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
pdb|2BCP|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
Length = 490
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 4/162 (2%)
Query: 173 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232
YIG+EL+ A + +V ++ C+ + D+ GI++ G
Sbjct: 204 YIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEVA 263
Query: 233 TNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADD 291
N G+V+++ + D + D+V++ VG RP +L G++ G + +TS
Sbjct: 264 GN--GKVEKI-ITDKNEYDVDMVILAVGFRPNTTLGNGKIDLFRNGAFLVNKRQETSIPG 320
Query: 292 VYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333
VYA+GD AT R+ + +A ++ A T+
Sbjct: 321 VYAIGDCATIYDNATRDTNYIALASNAVRTGIVAAHNACGTD 362
>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
pdb|2BC0|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
Length = 490
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 4/162 (2%)
Query: 173 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232
YIG+EL+ A + +V ++ C+ + D+ GI++ G
Sbjct: 204 YIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEVA 263
Query: 233 TNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADD 291
N G+V+++ + D + D+V++ VG RP +L G++ G + +TS
Sbjct: 264 GN--GKVEKI-ITDKNEYDVDMVILAVGFRPNTTLGNGKIDLFRNGAFLVNKRQETSIPG 320
Query: 292 VYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333
VYA+GD AT R+ + +A ++ A T+
Sbjct: 321 VYAIGDCATIYDNATRDTNYIALASNAVRTGIVAAHNACGTD 362
>pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3URH|B Chain B, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 491
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 20/147 (13%)
Query: 206 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADG---EVKEVKLKDGRTLEADIVVVGVGGR 262
++A + +GI G G + DG + VK + TL+A++V++ G +
Sbjct: 240 EVAKQLQRXLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRK 299
Query: 263 PL---ISLFK-GQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHA 318
P + L K G V +++G +E D F+TS VYA+GDV P + H
Sbjct: 300 PSTDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGPX-----------LAHK 348
Query: 319 RKSAEQAVKTIMATEGGKTVTGYDYLP 345
+ AV I+A + G YD +P
Sbjct: 349 AEDEGVAVAEIIAGQAGH--VNYDVIP 373
>pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
pdb|3LAD|B Chain B, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
Length = 476
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 74/177 (41%), Gaps = 19/177 (10%)
Query: 174 IGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGF-T 232
IGLEL + +V+++ +P + +A + +G+KI+ G G
Sbjct: 191 IGLELGSVWARLGAEVTVLEAMDKFLPAV-DEQVAKEAQKILTKQGLKILLGARVTGTEV 249
Query: 233 TNADGEVKEVKLKDGRTLEADIVVVGVGGRP----LISLFKGQVAENKGGIETDDFFKTS 288
N VK V + ++ D ++V VG RP L++ G + +G I DD+ TS
Sbjct: 250 KNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYCATS 309
Query: 289 ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLP 345
VYA+GDV M A K++E+ V G K YD +P
Sbjct: 310 VPGVYAIGDVVRGAML-------------AHKASEEGVVVAERIAGHKAQMNYDLIP 353
>pdb|3KD9|A Chain A, Crystal Structure Of Pyridine Nucleotide Disulfide
Oxidoreductase From Pyrococcus Horikoshii
pdb|3KD9|B Chain B, Crystal Structure Of Pyridine Nucleotide Disulfide
Oxidoreductase From Pyrococcus Horikoshii
pdb|3KD9|C Chain C, Crystal Structure Of Pyridine Nucleotide Disulfide
Oxidoreductase From Pyrococcus Horikoshii
Length = 449
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 98/224 (43%), Gaps = 18/224 (8%)
Query: 83 KEKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGSTVLRLTDFGVEGADAKN 141
K++GI+L L+ E++ D + G +++ LV A G++ +EG + K
Sbjct: 70 KKRGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGASP---QVPAIEGVNLKG 126
Query: 142 IFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMPR 201
+F DA + E YIG+E++ A +V+M+ + R
Sbjct: 127 VFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRR 186
Query: 202 LFTADIAAFYE---GYYANKGIKIIKGTVAVGFTTNADGEVK-EVKLKDGRTLEADIVVV 257
F ++ E + N ++ I T +GE + E + D +A++V++
Sbjct: 187 SFDKEVTDILEEKLKKHVNLRLQEI--------TMKIEGEERVEKVVTDAGEYKAELVIL 238
Query: 258 GVGGRPLISLFK--GQVAENKGGIETDDFFKTSADDVYAVGDVA 299
G +P I L K G G I T++ +TS ++VYA GDVA
Sbjct: 239 ATGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVA 282
>pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2JK6|B Chain B, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2W0H|A Chain A, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2W0H|B Chain B, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2YAU|A Chain A, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|2YAU|B Chain B, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|4ADW|A Chain A, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
pdb|4ADW|B Chain B, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
Length = 511
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 218 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP---LISLFKGQVAE 274
GI++ T N DG V DG + D V++ +G P + L K V
Sbjct: 265 NGIRVRTNLNPTKITKNEDGS-NHVHFNDGTEEDYDQVMLAIGRVPRSQALQLDKAGVRT 323
Query: 275 NKGG-IETDDFFKTSADDVYAVGDVATFPM 303
K G ++ D + KTS D++YA+GDV M
Sbjct: 324 GKNGAVQVDAYSKTSVDNIYAIGDVTNRVM 353
>pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
pdb|2X50|B Chain B, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
Length = 510
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 218 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP---LISLFKGQVAE 274
GI++ T N DG V DG + D V++ +G P + L K V
Sbjct: 265 NGIRVRTNLNPTKITKNEDGS-NHVHFNDGTEEDYDQVMLAIGRVPRSQALQLDKAGVRT 323
Query: 275 NKGG-IETDDFFKTSADDVYAVGDVATFPM 303
K G ++ D + KTS D++YA+GDV M
Sbjct: 324 GKNGAVQVDAYSKTSVDNIYAIGDVTNRVM 353
>pdb|2TPR|A Chain A, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
pdb|2TPR|B Chain B, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
Length = 490
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 218 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP---LISLFKG--QV 272
GI + T NADG + V + G + D+V++ +G P + L K +V
Sbjct: 244 NGINVRTHENPAKVTKNADG-TRHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEV 302
Query: 273 AENKGGIETDDFFKTSADDVYAVGDV 298
A+N G I+ D + KT+ D++YA+GDV
Sbjct: 303 AKN-GAIKVDAYSKTNVDNIYAIGDV 327
>pdb|1FEA|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|C Chain C, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|D Chain D, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEB|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEB|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEC|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
pdb|1FEC|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
Length = 490
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 218 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP---LISLFKG--QV 272
GI + T NADG + V + G + D+V++ +G P + L K +V
Sbjct: 244 NGINVRTHENPAKVTKNADG-TRHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEV 302
Query: 273 AENKGGIETDDFFKTSADDVYAVGDV 298
A+N G I+ D + KT+ D++YA+GDV
Sbjct: 303 AKN-GAIKVDAYSKTNVDNIYAIGDV 327
>pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
pdb|4EMW|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
Length = 436
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 240 KEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVA--ENKGGIETDDFFKTSADDVYAVGD 297
E+ K G+ D+++ GVG P + + KG I +D F+T+ ++YA+GD
Sbjct: 217 NEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGD 276
Query: 298 VAT 300
+AT
Sbjct: 277 IAT 279
>pdb|1TYP|A Chain A, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
pdb|1TYP|B Chain B, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
Length = 487
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 218 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP---LISLFKG--QV 272
GI + T NADG + V + G + D+V++ +G P + L K +V
Sbjct: 245 NGINVRTHENPAKVTKNADG-TRHVVFESGAEADYDVVMLAIGRVPRSQTLQLDKAGVEV 303
Query: 273 AENKGGIETDDFFKTSADDVYAVGDV 298
A+N G I+ D + KT+ D++YA+GDV
Sbjct: 304 AKN-GAIKVDAYSKTNVDNIYAIGDV 328
>pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
pdb|1YQZ|B Chain B, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
Length = 438
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 240 KEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVA--ENKGGIETDDFFKTSADDVYAVGD 297
E+ K G+ D+++ GVG P + + KG I +D F+T+ ++YA+GD
Sbjct: 218 NEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGD 277
Query: 298 VAT 300
+AT
Sbjct: 278 IAT 280
>pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQS|B Chain B, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 240 KEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVA--ENKGGIETDDFFKTSADDVYAVGD 297
E+ K G+ D+++ GVG P + + KG I +D F+T+ ++YA+GD
Sbjct: 217 NEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGD 276
Query: 298 VAT 300
+AT
Sbjct: 277 IAT 279
>pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQR|B Chain B, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 240 KEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVA--ENKGGIETDDFFKTSADDVYAVGD 297
E+ K G+ D+++ GVG P + + KG I +D F+T+ ++YA+GD
Sbjct: 217 NEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGD 276
Query: 298 VAT 300
+AT
Sbjct: 277 IAT 279
>pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM3|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM4|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
pdb|4EM4|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
Length = 437
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 240 KEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVA--ENKGGIETDDFFKTSADDVYAVGD 297
E+ K G+ D+++ GVG P + + KG I +D F+T+ ++YA+GD
Sbjct: 217 NEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGD 276
Query: 298 VAT 300
+AT
Sbjct: 277 IAT 279
>pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
pdb|4EQW|B Chain B, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
Length = 437
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 240 KEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVA--ENKGGIETDDFFKTSADDVYAVGD 297
E+ K G+ D+++ GVG P + + KG I +D F+T+ ++YA+GD
Sbjct: 217 NEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGD 276
Query: 298 VAT 300
+AT
Sbjct: 277 IAT 279
>pdb|1TYT|A Chain A, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
pdb|1TYT|B Chain B, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
Length = 487
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 218 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP---LISLFKG--QV 272
GI + T NADG + V + G + D+V++ +G P + L K +V
Sbjct: 245 NGINVRTHENPAKVTKNADG-TRHVVFESGAEADYDVVMLAIGRVPRSQTLQLDKAGVEV 303
Query: 273 AENKGGIETDDFFKTSADDVYAVGDV 298
A+N G I+ D + KT+ D++YA+GDV
Sbjct: 304 AKN-GAIKVDAYSKTNVDNIYAIGDV 328
>pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQX|B Chain B, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 240 KEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVA--ENKGGIETDDFFKTSADDVYAVGD 297
E+ K G+ D+++ GVG P + + KG I +D F+T+ ++YA+GD
Sbjct: 217 NEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGD 276
Query: 298 VAT 300
+AT
Sbjct: 277 IAT 279
>pdb|1ONF|A Chain A, Crystal Structure Of Plasmodium Falciparum Glutathione
Reductase
Length = 500
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 61/152 (40%), Gaps = 16/152 (10%)
Query: 173 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232
YI +EL +K ID S ++ + R F + E I I+ V
Sbjct: 186 YIAVELINVIKRLGID-SYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIK 244
Query: 233 TNADGEVKEVKLKDGRTLEA-DIVVVGVGGRP---LISLFKGQVAENKGGIETDDFFKTS 288
+D + + L DGR E D V+ VG P + L K V N I D+ +TS
Sbjct: 245 KVSDKNL-SIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYIVVDENQRTS 303
Query: 289 ADDVYAVGDVATFP----------MKLYREMR 310
+++YAVGD +KLY E R
Sbjct: 304 VNNIYAVGDCCMVKKSKEIEDLNLLKLYNEER 335
>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|B Chain B, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|C Chain C, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|D Chain D, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|E Chain E, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|F Chain F, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|G Chain G, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|H Chain H, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|I Chain I, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|J Chain J, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 474
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 65/159 (40%), Gaps = 21/159 (13%)
Query: 206 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK-EVKLKDG---RTLEADIVVVGVGG 261
+I+ ++ +G K T G T +DG++ ++ G + D+++V +G
Sbjct: 221 EISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGR 280
Query: 262 RPLISLFK----GQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDH 317
RP G + +G I + F+T ++YA+GDV PM
Sbjct: 281 RPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGPML------------- 327
Query: 318 ARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSW 356
A K+ ++ + + GG Y+ +P +++W
Sbjct: 328 AHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAW 366
>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMD|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|2F5Z|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|I Chain I, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|J Chain J, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
Length = 474
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 65/159 (40%), Gaps = 21/159 (13%)
Query: 206 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK-EVKLKDG---RTLEADIVVVGVGG 261
+I+ ++ +G K T G T +DG++ ++ G + D+++V +G
Sbjct: 221 EISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGR 280
Query: 262 RPLISLFK----GQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDH 317
RP G + +G I + F+T ++YA+GDV PM
Sbjct: 281 RPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGPML------------- 327
Query: 318 ARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSW 356
A K+ ++ + + GG Y+ +P +++W
Sbjct: 328 AHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAW 366
>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|B Chain B, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|C Chain C, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|D Chain D, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
Length = 495
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 65/159 (40%), Gaps = 21/159 (13%)
Query: 206 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK-EVKLKDG---RTLEADIVVVGVGG 261
+I+ ++ +G K T G T +DG++ ++ G + D+++V +G
Sbjct: 242 EISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGR 301
Query: 262 RPLISLFK----GQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDH 317
RP G + +G I + F+T ++YA+GDV PM
Sbjct: 302 RPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGPML------------- 348
Query: 318 ARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSW 356
A K+ ++ + + GG Y+ +P +++W
Sbjct: 349 AHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAW 387
>pdb|3II4|A Chain A, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound
To A Triazaspirodimethoxybenzoyl Inhibitor
pdb|3II4|B Chain B, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound
To A Triazaspirodimethoxybenzoyl Inhibitor
Length = 466
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 8/129 (6%)
Query: 176 LELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA 235
+E LK +DV++V P +P AD++ E + G+ I+ T V +
Sbjct: 186 MEFGYVLKNYGVDVTIVEFLPRALPNE-DADVSKEIEKQFKKLGVTILTAT-KVESIADG 243
Query: 236 DGEVKEVKLKDG--RTLEADIVVVGVGGRPLIS---LFKGQVA-ENKGGIETDDFFKTSA 289
+V KDG + L+A+ V+ +G P + L K VA ++ I DD+ +T+
Sbjct: 244 GSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNV 303
Query: 290 DDVYAVGDV 298
+YA+GDV
Sbjct: 304 GHIYAIGDV 312
>pdb|2A8X|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From
Mycobacterium Tuberculosis
pdb|2A8X|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From
Mycobacterium Tuberculosis
Length = 464
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Query: 177 ELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 236
E LK +DV++V P +P AD++ E + G+ I+ T V +
Sbjct: 185 EFGYVLKNYGVDVTIVEFLPRALPNE-DADVSKEIEKQFKKLGVTILTAT-KVESIADGG 242
Query: 237 GEVKEVKLKDG--RTLEADIVVVGVGGRPLIS---LFKGQVA-ENKGGIETDDFFKTSAD 290
+V KDG + L+A+ V+ +G P + L K VA ++ I DD+ +T+
Sbjct: 243 SQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYXRTNVG 302
Query: 291 DVYAVGDV 298
+YA+GDV
Sbjct: 303 HIYAIGDV 310
>pdb|1XDI|A Chain A, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
pdb|1XDI|B Chain B, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
Length = 499
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 264
AD A E +A +G+++ K A T G + V + DGRT+E ++ +G P
Sbjct: 223 ADAALVLEESFAERGVRLFKNARAASVTRTGAGVL--VTMTDGRTVEGSHALMTIGSVPN 280
Query: 265 IS---LFKGQVAENKGG-IETDDFFKTSADDVYAVGDV 298
S L + + +G + D +T A +YA GD
Sbjct: 281 TSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDC 318
>pdb|2EQ6|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2EQ6|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2EQ8|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|D Chain D, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|E Chain E, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ9|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|D Chain D, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|E Chain E, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|G Chain G, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|H Chain H, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|J Chain J, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|K Chain K, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
Length = 464
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 8/144 (5%)
Query: 174 IGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233
+GLEL + +V+++ P +P+ + AA +GI++ T AVG+
Sbjct: 180 VGLELGQVYRRLGAEVTLIEYMPEILPQ-GDPETAALLRRALEKEGIRVRTKTKAVGYEK 238
Query: 234 NADG---EVKEVKLKDGRTLEADIVVVGVGGRPL---ISLFKGQV-AENKGGIETDDFFK 286
DG ++ + +G + D V+V VG +P + L K V + +G I + +
Sbjct: 239 KKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNARME 298
Query: 287 TSADDVYAVGDVATFPMKLYREMR 310
TS VYA+GD A P+ ++ MR
Sbjct: 299 TSVPGVYAIGDAARPPLLAHKAMR 322
>pdb|4DNA|A Chain A, Crystal Structure Of Putative Glutathione Reductase From
Sinorhizobium Meliloti 1021
pdb|4DNA|B Chain B, Crystal Structure Of Putative Glutathione Reductase From
Sinorhizobium Meliloti 1021
Length = 463
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 6/130 (4%)
Query: 173 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232
YI +E + + +++Y + R F D KGI+I+ + +
Sbjct: 180 YIAVEFANIFHGLGVKTTLIYRGKEILSR-FDQDXRRGLHAAXEEKGIRILCEDIIQSVS 238
Query: 233 TNADGEVKEVKLKDGRTLEADIVVVGVGGRPL---ISLFKGQVAENK-GGIETDDFFKTS 288
+ADG K G + AD V + +G P + L V N+ G I D F +TS
Sbjct: 239 ADADGRRVATTXKHGEIV-ADQVXLALGRXPNTNGLGLEAAGVRTNELGAIIVDAFSRTS 297
Query: 289 ADDVYAVGDV 298
+YA+GDV
Sbjct: 298 TPGIYALGDV 307
>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile
pdb|2R9Z|B Chain B, Glutathione Amide Reductase From Chromatium Gracile
pdb|2RAB|A Chain A, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
pdb|2RAB|B Chain B, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
Length = 463
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 18/92 (19%)
Query: 200 PRL------FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEAD 253
PRL + I +F++GY GI + G D EV +G+ L AD
Sbjct: 81 PRLVAGRDRYIGAINSFWDGYVERLGITRVDG-----HARFVDAHTIEV---EGQRLSAD 132
Query: 254 IVVVGVGGRPLISLFKGQVAENKGGIETDDFF 285
+V+ GGRP++ G + GI +D FF
Sbjct: 133 HIVIATGGRPIVPRLPGA----ELGITSDGFF 160
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 8/131 (6%)
Query: 173 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232
YIG+EL+ L+ +V++V E + + A E +A +GI+
Sbjct: 176 YIGIELAGLLRSFGSEVTVVALEDRLLFQFDPLLSATLAENMHA-QGIETHLEFAVAALE 234
Query: 233 TNADGEVKEVKLKDGRTLEA-DIVVVGVGGRPLISLFKGQVA----ENKGGIETDDFFKT 287
+A G + +DG LE D V+ VG P + A ++ G + TD + T
Sbjct: 235 RDAQGTT--LVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNT 292
Query: 288 SADDVYAVGDV 298
+ VYA+GD+
Sbjct: 293 NVPGVYALGDI 303
>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GER|B Chain B, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GET|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GET|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 218 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL---ISLFKGQVAE 274
+G ++ + N DG + ++L+DGR+ D ++ +G P I+L V
Sbjct: 221 EGPQLHTNAIPKAVVKNTDGSLT-LELEDGRSETVDCLIWAIGREPANDNINLEAAGVKT 279
Query: 275 N-KGGIETDDFFKTSADDVYAVGD 297
N KG I D + T+ + +YAVGD
Sbjct: 280 NEKGYIVVDKYQNTNIEGIYAVGD 303
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 207 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 266
I YE + +IKG F D + EV +G T+ AD +++ GGRP
Sbjct: 95 IHTSYENVLGKNNVDVIKG-----FARFVDAKTLEV---NGETITADHILIATGGRPSHP 146
Query: 267 LFKGQVAENKGGIETDDFFKTSA 289
G + GI++D FF A
Sbjct: 147 DIPGV----EYGIDSDGFFALPA 165
>pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GES|B Chain B, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 218 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL---ISLFKGQVAE 274
+G ++ + N DG + ++L+DGR+ D ++ +G P I+L V
Sbjct: 221 EGPQLHTNAIPKAVVKNTDGSLT-LELEDGRSETVDCLIWAIGREPANDNINLEAAGVKT 279
Query: 275 N-KGGIETDDFFKTSADDVYAVGD 297
N KG I D + T+ + +YAVGD
Sbjct: 280 NEKGYIVVDKYQNTNIEGIYAVGD 303
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 207 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 266
I YE + +IKG F D + EV +G T+ AD +++ GGRP
Sbjct: 95 IHTSYENVLGKNNVDVIKG-----FARFVDAKTLEV---NGETITADHILIATGGRPSHP 146
Query: 267 LFKGQVAENKGGIETDDFFKTSA 289
G + GI++D FF A
Sbjct: 147 DIPGV----EYGIDSDGFFALPA 165
>pdb|1OJT|A Chain A, Structure Of Dihydrolipoamide Dehydrogenase
Length = 482
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 253 DIVVVGVGGRP---LISLFKGQVA-ENKGGIETDDFFKTSADDVYAVGDVATFPMKLYRE 308
D V+V G P LIS K VA ++G IE D +T+ +YA+GD+ PM ++
Sbjct: 276 DAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPMLAHKA 335
Query: 309 MR 310
+
Sbjct: 336 VH 337
>pdb|1BHY|A Chain A, Low Temperature Middle Resolution Structure Of P64k From
Masc Data
Length = 482
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 253 DIVVVGVGGRP---LISLFKGQVA-ENKGGIETDDFFKTSADDVYAVGDVATFPMKLYRE 308
D V+V G P LIS K VA ++G IE D +T+ +YA+GD+ PM ++
Sbjct: 276 DAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPMLAHKA 335
Query: 309 MR 310
+
Sbjct: 336 VH 337
>pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
pdb|3AB1|B Chain B, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
Length = 360
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 235 ADGEVKEVKLK--DGR--TLEADIVVVGVGGRP-LISLFKGQVAENKGGIETDDFFKTSA 289
++G + V L+ DG T+EAD +++ +G + L L + + + + D KTS
Sbjct: 231 SNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELYENALVVDSHMKTSV 290
Query: 290 DDVYAVGDVATFPMKL 305
D +YA GD+A +P KL
Sbjct: 291 DGLYAAGDIAYYPGKL 306
>pdb|3NKS|A Chain A, Structure Of Human Protoporphyrinogen Ix Oxidase
Length = 477
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 212 EGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQ 271
E + ++G+ +++G G + A+G K V L+D +LEAD V+ + L L +
Sbjct: 241 ETHLTSRGVSVLRGQPVCGLSLQAEGRWK-VSLRDS-SLEADHVISAIPASVLSELLPAE 298
Query: 272 VA 273
A
Sbjct: 299 AA 300
>pdb|4GCM|A Chain A, Crystal Structure Of A Thioredoxine Reductase (Trxb) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A
Resolution
pdb|4GCM|B Chain B, Crystal Structure Of A Thioredoxine Reductase (Trxb) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A
Resolution
Length = 312
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 236 DGEVKEVKL---KDG--RTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSA 289
DG+V V L KDG T EAD V + +G +PL + FK + + G I T D TS
Sbjct: 211 DGKVGSVTLTSTKDGSEETHEADGVFIYIGXKPLTAPFKDLGITNDVGYIVTKDDXTTSV 270
Query: 290 DDVYAVGDV 298
++A GDV
Sbjct: 271 PGIFAAGDV 279
>pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
pdb|3DH9|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
Length = 482
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 21/139 (15%)
Query: 173 YIGLELSAALKINNIDVSMVYPEPWCMPRL-----FTADIAAFYEGYYANKGIKIIKGTV 227
YIGLE + LK + Y EP M R F +A +GI ++ TV
Sbjct: 193 YIGLECAGFLK------GLGY-EPTVMVRSIVLRGFDQQMAELVAASMEERGIPFLRKTV 245
Query: 228 AVGFTTNADGEVKEVKLKDGRTLEA-----DIVVVGVGGRPLI---SLFKGQVAENKGGI 279
+ DG++ VK K+ T E D V+ +G + L+ +L V K I
Sbjct: 246 PLSVEKQDDGKLL-VKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKI 304
Query: 280 ETDDFFKTSADDVYAVGDV 298
D T+ ++YAVGD+
Sbjct: 305 PVDSQEATNVANIYAVGDI 323
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 230 GFTTNADGEVKEVKLKDG-RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFF 285
G + D KLK G RT+ A V+ VGGRP G V + GI +DD F
Sbjct: 124 GLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGAV---EYGITSDDLF 177
>pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila
Melanogaster
Length = 488
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 21/139 (15%)
Query: 173 YIGLELSAALKINNIDVSMVYPEPWCMPRL-----FTADIAAFYEGYYANKGIKIIKGTV 227
YIGLE + LK + Y EP M R F +A +GI ++ TV
Sbjct: 197 YIGLECAGFLK------GLGY-EPTVMVRSIVLRGFDQQMAELVAASMEERGIPFLRKTV 249
Query: 228 AVGFTTNADGEVKEVKLKDGRTLEA-----DIVVVGVGGRPLI---SLFKGQVAENKGGI 279
+ DG++ VK K+ T E D V+ +G + L+ +L V K I
Sbjct: 250 PLSVEKQDDGKLL-VKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKI 308
Query: 280 ETDDFFKTSADDVYAVGDV 298
D T+ ++YAVGD+
Sbjct: 309 PVDSQEATNVANIYAVGDI 327
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 230 GFTTNADGEVKEVKLKDG-RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFF 285
G + D KLK G RT+ A V+ VGGRP G V + GI +DD F
Sbjct: 128 GLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGAV---EYGITSDDLF 181
>pdb|3DGH|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
pdb|3DGH|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
Length = 483
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 21/139 (15%)
Query: 173 YIGLELSAALKINNIDVSMVYPEPWCMPRL-----FTADIAAFYEGYYANKGIKIIKGTV 227
YIGLE + LK + Y EP M R F +A +GI ++ TV
Sbjct: 197 YIGLECAGFLK------GLGY-EPTVMVRSIVLRGFDQQMAELVAASMEERGIPFLRKTV 249
Query: 228 AVGFTTNADGEVKEVKLKDGRTLEA-----DIVVVGVGGRPLI---SLFKGQVAENKGGI 279
+ DG++ VK K+ T E D V+ +G + L+ +L V K I
Sbjct: 250 PLSVEKQDDGKLL-VKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKI 308
Query: 280 ETDDFFKTSADDVYAVGDV 298
D T+ ++YAVGD+
Sbjct: 309 PVDSQEATNVANIYAVGDI 327
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 230 GFTTNADGEVKEVKLKDG-RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFF 285
G + D KLK G RT+ A V+ VGGRP G V + GI +DD F
Sbjct: 128 GLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGAV---EYGITSDDLF 181
>pdb|3L8K|A Chain A, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
pdb|3L8K|B Chain B, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
Length = 466
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 24/138 (17%)
Query: 173 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232
YIGLE+++ ++ + ++ + L DI N + I+K + + F
Sbjct: 182 YIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIV--------NTLLSILK--LNIKFN 231
Query: 233 TNADGEVKEVK---------LKDG--RTLEADIVVVGVGGRPLISLFKGQV--AENKGGI 279
+ EVK++K KDG +++ + VV+ G RP+I ++ + +K GI
Sbjct: 232 SPVT-EVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSISKTGI 290
Query: 280 ETDDFFKTSADDVYAVGD 297
D+ KT+ +V+A GD
Sbjct: 291 VVDETMKTNIPNVFATGD 308
>pdb|1GSN|A Chain A, Human Glutathione Reductase Modified By
Dinitrosoglutathione
Length = 478
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 36/150 (24%)
Query: 173 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232
YI +E++ L S++ + R F + I+ N G++++K +
Sbjct: 197 YIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNXTEELENAGVEVLKFS------ 249
Query: 233 TNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK---------GQVAE------NKG 277
+VKEVK K LE +V G P++++ G+V NK
Sbjct: 250 -----QVKEVK-KTLSGLEVSMVTAVPGRLPVMTMIPDVDXLLWAIGRVPNTKDLSLNKL 303
Query: 278 GIETDD--------FFKTSADDVYAVGDVA 299
GI+TDD F T+ +YAVGDV
Sbjct: 304 GIQTDDKGHIIVDEFQNTNVKGIYAVGDVC 333
>pdb|1K4Q|A Chain A, Human Glutathione Reductase Inactivated By Peroxynitrite
Length = 463
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 36/150 (24%)
Query: 173 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232
YI +E++ L S++ + R F + I+ N G++++K +
Sbjct: 182 YIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVLKFS------ 234
Query: 233 TNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK---------GQVAE------NKG 277
+VKEVK K LE +V G P++++ G+V NK
Sbjct: 235 -----QVKEVK-KTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKL 288
Query: 278 GIETDD--------FFKTSADDVYAVGDVA 299
GI+TDD F T+ +YAVGDV
Sbjct: 289 GIQTDDKGHIIVDEFQNTNVKGIYAVGDVC 318
>pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene
Inhibitor
Length = 461
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 36/150 (24%)
Query: 173 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232
YI +E++ L S++ + R F + I+ N G++++K +
Sbjct: 180 YIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVLKFS------ 232
Query: 233 TNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK---------GQVAE------NKG 277
+VKEVK K LE +V G P++++ G+V NK
Sbjct: 233 -----QVKEVK-KTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKL 286
Query: 278 GIETDD--------FFKTSADDVYAVGDVA 299
GI+TDD F T+ +YAVGDV
Sbjct: 287 GIQTDDKGHIIVDEFQNTNVKGIYAVGDVC 316
>pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
Length = 477
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 36/150 (24%)
Query: 173 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232
YI +E++ L S++ + R F + I+ N G++++K +
Sbjct: 196 YIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVLKFS------ 248
Query: 233 TNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK---------GQVAE------NKG 277
+VKEVK K LE +V G P++++ G+V NK
Sbjct: 249 -----QVKEVK-KTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKL 302
Query: 278 GIETDD--------FFKTSADDVYAVGDVA 299
GI+TDD F T+ +YAVGDV
Sbjct: 303 GIQTDDKGHIIVDEFQNTNVKGIYAVGDVC 332
>pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Ajoene Inhibitor And Subversive Substrate
pdb|2GH5|A Chain A, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|2GH5|B Chain B, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|1GRA|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRB|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRE|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRF|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|3GRS|A Chain A, Refined Structure Of Glutathione Reductase At 1.54
Angstroms Resolution
pdb|4GR1|A Chain A, The Binding Of The Retro-analogue Of Glutathione Disulfide
To Glutathione Reductase
pdb|3DJJ|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK4|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK8|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK9|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|1GRH|A Chain A, Inhibition Of Human Glutathione Reductase By The
Nitrosourea Drugs 1, 3-Bis(2-Chloroethyl)-1-Nitrosourea
And 1-(2-Chloroethyl)-3-(2- Hydroxyethyl)-1-Nitrosourea
pdb|3SQP|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
pdb|3SQP|B Chain B, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
Length = 478
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 36/150 (24%)
Query: 173 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232
YI +E++ L S++ + R F + I+ N G++++K +
Sbjct: 197 YIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVLKFS------ 249
Query: 233 TNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK---------GQVAE------NKG 277
+VKEVK K LE +V G P++++ G+V NK
Sbjct: 250 -----QVKEVK-KTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKL 303
Query: 278 GIETDD--------FFKTSADDVYAVGDVA 299
GI+TDD F T+ +YAVGDV
Sbjct: 304 GIQTDDKGHIIVDEFQNTNVKGIYAVGDVC 333
>pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
Length = 478
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 36/150 (24%)
Query: 173 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232
YI +E++ L S++ + R F + I+ N G++++K +
Sbjct: 197 YIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVLKFS------ 249
Query: 233 TNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK---------GQVAE------NKG 277
+VKEVK K LE +V G P++++ G+V NK
Sbjct: 250 -----QVKEVK-KTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKL 303
Query: 278 GIETDD--------FFKTSADDVYAVGDVA 299
GI+TDD F T+ +YAVGDV
Sbjct: 304 GIQTDDKGHIIVDEFQNTNVKGIYAVGDVC 333
>pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By
Diglutathione-Dinitroso-Iron
Length = 478
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 36/150 (24%)
Query: 173 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232
YI +E++ L S++ + R F + I+ N G++++K +
Sbjct: 197 YIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVLKFS------ 249
Query: 233 TNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK---------GQVAE------NKG 277
+VKEVK K LE +V G P++++ G+V NK
Sbjct: 250 -----QVKEVK-KTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKL 303
Query: 278 GIETDD--------FFKTSADDVYAVGDVA 299
GI+TDD F T+ +YAVGDV
Sbjct: 304 GIQTDDKGHIIVDEFQNTNVKGIYAVGDVC 333
>pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione
Reductase, Complexed With Gopi
Length = 479
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 36/150 (24%)
Query: 173 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232
YI +E++ L S++ + R F + I+ N G++++K +
Sbjct: 198 YIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVLKFS------ 250
Query: 233 TNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK---------GQVAE------NKG 277
+VKEVK K LE +V G P++++ G+V NK
Sbjct: 251 -----QVKEVK-KTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKL 304
Query: 278 GIETDD--------FFKTSADDVYAVGDVA 299
GI+TDD F T+ +YAVGDV
Sbjct: 305 GIQTDDKGHIIVDEFQNTNVKGIYAVGDVC 334
>pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Glutathione Complex
pdb|3GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Trypanothione Complex
pdb|4GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Mixed
Disulfide Between Trypanothione And The Enzyme
pdb|5GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant,
Glutathionylspermidine Complex
Length = 461
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 36/150 (24%)
Query: 173 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232
YI +E++ L S++ + R F + I+ N G++++K +
Sbjct: 180 YIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVLKFS------ 232
Query: 233 TNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK---------GQVAE------NKG 277
+VKEVK K LE +V G P++++ G+V NK
Sbjct: 233 -----QVKEVK-KTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKL 286
Query: 278 GIETDD--------FFKTSADDVYAVGDVA 299
GI+TDD F T+ +YAVGDV
Sbjct: 287 GIQTDDKGHIIVDEFQNTNVKGIYAVGDVC 316
>pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT
Length = 478
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 36/150 (24%)
Query: 173 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232
YI +E++ L S++ + R F + I+ N G++++K +
Sbjct: 197 YIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVLKFS------ 249
Query: 233 TNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK---------GQVAE------NKG 277
+VKEVK K LE +V G P++++ G+V NK
Sbjct: 250 -----QVKEVK-KTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKL 303
Query: 278 GIETDD--------FFKTSADDVYAVGDVA 299
GI+TDD F T+ +YAVGDV
Sbjct: 304 GIQTDDKGHIIVDEFQNTNVKGIYAVGDVC 333
>pdb|2CO6|B Chain B, Salmonella Enterica Safa Pilin In Complex With The Safb
Chaperone (type I)
pdb|2CO7|B Chain B, Salmonella Enterica Safa Pilin In Complex With The Safb
Chaperone (Type Ii)
Length = 221
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 332 TEGGKTVTGYDYLPYFYSRAFDLSWQFYGD 361
T GGK +TG +Y+P F + ++ +GD
Sbjct: 171 TVGGKPITGLEYVPPFADKTLNMPGSAHGD 200
>pdb|2ZBW|A Chain A, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
pdb|2ZBW|B Chain B, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
Length = 335
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 250 LEADIVVVGVGG-RPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKL 305
LE D V++ G L L +A K I+ D TS VYA GD+ T+P KL
Sbjct: 239 LEVDAVLILAGYITKLGPLANWGLALEKNKIKVDTTXATSIPGVYACGDIVTYPGKL 295
>pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
pdb|2HQM|B Chain B, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
Length = 479
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/130 (20%), Positives = 58/130 (44%), Gaps = 5/130 (3%)
Query: 173 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232
YIG+EL+ + +V + R F I +Y +GI + K + V
Sbjct: 195 YIGIELAGVFHGLGSETHLVIRGETVL-RKFDECIQNTITDHYVKEGINVHKLSKIVKVE 253
Query: 233 TNADGEVKEVKLKDGRTLE-ADIVVVGVGGRPLISLFKGQVA---ENKGGIETDDFFKTS 288
N + + ++ + D ++++ D ++ +G + + + V + I D++ T+
Sbjct: 254 KNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSHDQIIADEYQNTN 313
Query: 289 ADDVYAVGDV 298
++Y++GDV
Sbjct: 314 VPNIYSLGDV 323
>pdb|1ZK7|A Chain A, Crystal Structure Of Tn501 Mera
pdb|1ZX9|A Chain A, Crystal Structure Of Tn501 Mera
Length = 467
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 215 YANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP---LISLFKGQ 271
+ +GI++++ T A + DGE V L AD ++V G P ++L
Sbjct: 226 FRAEGIEVLEHTQA-SQVAHMDGEF--VLTTTHGELRADKLLVATGRTPNTRSLALDAAG 282
Query: 272 VAEN-KGGIETDDFFKTSADDVYAVGDVATFPMKLY 306
V N +G I D +TS ++YA GD P +Y
Sbjct: 283 VTVNAQGAIVIDQGMRTSNPNIYAAGDCTDQPQFVY 318
>pdb|3CTY|A Chain A, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
pdb|3CTY|B Chain B, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
Length = 319
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 238 EVKEVKLKDGRT-----LEADIVVVGVGGRPLISLFK--GQVAENKGGIETDDFFKTSAD 290
+V VK KD T +E D V + VG P S K G + +G I D +TS
Sbjct: 222 KVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVKLDERGYIVVDSRQRTSVP 281
Query: 291 DVYAVGDVAT 300
VYA GDV +
Sbjct: 282 GVYAAGDVTS 291
>pdb|2APG|A Chain A, The Structure Of Tryptophan 7-Halogenase (Prna)suggests A
Mechanism For Regioselective Chlorination
pdb|2AQJ|A Chain A, The Structure Of Tryptophan 7-Halogenase (Prna) Suggests A
Mechanism For Regioselective Chlorination
pdb|2AR8|A Chain A, The Structure Of Tryptophan 7-Halogenase (Prna)suggests A
Mechanism For Regioselective Chlorination
pdb|2ARD|A Chain A, The Structure Of Tryptophan 7-Halogenase (Prna) Suggests A
Mechanism For Regioselective Chlorination
Length = 538
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 234 NADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 265
N G + + K+GRTLEAD+ + G R L+
Sbjct: 193 NNRGYISNLLTKEGRTLEADLFIDCSGMRGLL 224
>pdb|2JKC|A Chain A, Crystal Structure Of E346d Of Tryptophan 7-Halogenase
(Prna)
Length = 538
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 234 NADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 265
N G + + K+GRTLEAD+ + G R L+
Sbjct: 193 NNRGYISNLLTKEGRTLEADLFIDCSGMRGLL 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,603,942
Number of Sequences: 62578
Number of extensions: 544707
Number of successful extensions: 1750
Number of sequences better than 100.0: 122
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 1561
Number of HSP's gapped (non-prelim): 169
length of query: 434
length of database: 14,973,337
effective HSP length: 102
effective length of query: 332
effective length of database: 8,590,381
effective search space: 2852006492
effective search space used: 2852006492
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)