Query 013914
Match_columns 434
No_of_seqs 313 out of 3102
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 08:39:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013914.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013914hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09754 phenylpropionate diox 100.0 4.4E-55 9.6E-60 419.3 50.1 392 4-428 2-395 (396)
2 COG1249 Lpd Pyruvate/2-oxoglut 100.0 7.3E-55 1.6E-59 412.9 33.5 397 2-432 1-448 (454)
3 PRK13512 coenzyme A disulfide 100.0 6.3E-52 1.4E-56 401.7 42.4 400 7-432 3-425 (438)
4 KOG1336 Monodehydroascorbate/f 100.0 1.4E-52 3E-57 382.5 35.4 401 5-433 74-475 (478)
5 PRK09564 coenzyme A disulfide 100.0 7.6E-52 1.7E-56 404.2 42.7 405 7-432 2-431 (444)
6 PRK06370 mercuric reductase; V 100.0 1.8E-51 3.9E-56 402.3 35.0 399 1-432 1-447 (463)
7 PRK05249 soluble pyridine nucl 100.0 2.6E-51 5.6E-56 401.8 33.8 399 1-432 1-447 (461)
8 TIGR01421 gluta_reduc_1 glutat 100.0 1.3E-50 2.8E-55 393.2 34.7 395 4-433 1-445 (450)
9 PLN02507 glutathione reductase 100.0 4.2E-50 9E-55 393.0 37.8 394 5-432 25-477 (499)
10 TIGR01424 gluta_reduc_2 glutat 100.0 2.9E-50 6.2E-55 391.3 35.8 393 5-432 2-440 (446)
11 PRK14989 nitrite reductase sub 100.0 1.1E-48 2.4E-53 400.2 48.3 389 5-426 3-403 (847)
12 PRK06116 glutathione reductase 100.0 3.6E-50 7.8E-55 392.0 35.7 395 3-432 2-444 (450)
13 PRK06467 dihydrolipoamide dehy 100.0 4.1E-50 8.8E-55 391.9 33.4 395 2-432 1-449 (471)
14 PTZ00058 glutathione reductase 100.0 1.9E-49 4.2E-54 389.1 37.0 403 4-432 47-551 (561)
15 PRK14694 putative mercuric red 100.0 4E-49 8.7E-54 385.6 38.4 397 1-432 1-447 (468)
16 PRK07845 flavoprotein disulfid 100.0 3.3E-49 7.2E-54 385.3 34.7 395 6-432 2-450 (466)
17 TIGR01423 trypano_reduc trypan 100.0 1.6E-49 3.6E-54 386.2 32.3 394 4-432 2-465 (486)
18 PRK07846 mycothione reductase; 100.0 5.1E-49 1.1E-53 381.7 35.4 392 5-432 1-440 (451)
19 PRK08010 pyridine nucleotide-d 100.0 3.2E-49 7E-54 384.4 33.5 395 4-432 2-431 (441)
20 TIGR02374 nitri_red_nirB nitri 100.0 1.8E-47 4E-52 392.2 47.4 382 8-423 1-388 (785)
21 PLN02546 glutathione reductase 100.0 5.5E-49 1.2E-53 386.2 33.9 392 5-432 79-526 (558)
22 PRK06416 dihydrolipoamide dehy 100.0 1.2E-48 2.6E-53 382.8 36.2 396 4-432 3-446 (462)
23 PRK04965 NADH:flavorubredoxin 100.0 4.8E-47 1E-51 361.8 44.4 361 6-403 3-367 (377)
24 PRK06115 dihydrolipoamide dehy 100.0 2E-48 4.3E-53 379.9 35.5 396 4-432 2-450 (466)
25 PRK05976 dihydrolipoamide dehy 100.0 1.4E-48 3E-53 382.5 34.0 401 2-432 1-456 (472)
26 TIGR02053 MerA mercuric reduct 100.0 9.4E-49 2E-53 383.4 32.7 391 6-430 1-440 (463)
27 PRK07818 dihydrolipoamide dehy 100.0 1.9E-48 4.1E-53 381.0 34.7 394 1-432 1-450 (466)
28 PRK13748 putative mercuric red 100.0 2.5E-47 5.5E-52 382.4 37.3 394 4-432 97-540 (561)
29 PRK06912 acoL dihydrolipoamide 100.0 1.1E-47 2.3E-52 374.6 33.6 392 7-432 2-442 (458)
30 TIGR03452 mycothione_red mycot 100.0 3.3E-47 7.1E-52 369.6 36.0 393 4-432 1-443 (452)
31 PRK07251 pyridine nucleotide-d 100.0 2E-47 4.4E-52 371.4 34.1 393 4-432 2-430 (438)
32 PTZ00153 lipoamide dehydrogena 100.0 5.6E-47 1.2E-51 376.1 37.6 398 5-432 116-644 (659)
33 PRK14727 putative mercuric red 100.0 3.1E-47 6.8E-52 372.7 35.3 394 4-432 15-458 (479)
34 TIGR01438 TGR thioredoxin and 100.0 4.9E-47 1.1E-51 369.9 34.4 393 5-432 2-462 (484)
35 PRK06327 dihydrolipoamide dehy 100.0 5E-47 1.1E-51 371.2 34.6 397 3-432 2-459 (475)
36 PRK06292 dihydrolipoamide dehy 100.0 1E-46 2.3E-51 369.2 34.3 395 4-432 2-444 (460)
37 PTZ00052 thioredoxin reductase 100.0 2.8E-46 6E-51 366.4 33.8 395 4-433 4-473 (499)
38 TIGR01350 lipoamide_DH dihydro 100.0 7.1E-46 1.5E-50 363.7 35.3 396 5-432 1-445 (461)
39 TIGR03385 CoA_CoA_reduc CoA-di 100.0 7.7E-45 1.7E-49 352.7 38.8 383 19-424 1-409 (427)
40 COG1251 NirB NAD(P)H-nitrite r 100.0 5.7E-45 1.2E-49 347.4 33.1 384 5-421 3-391 (793)
41 KOG1335 Dihydrolipoamide dehyd 100.0 1.4E-45 3E-50 324.9 25.0 395 4-432 38-489 (506)
42 KOG0405 Pyridine nucleotide-di 100.0 9.5E-44 2.1E-48 309.4 25.8 394 4-429 19-463 (478)
43 COG1252 Ndh NADH dehydrogenase 100.0 1.6E-43 3.4E-48 327.0 28.9 311 5-344 3-342 (405)
44 PTZ00318 NADH dehydrogenase-li 100.0 5.6E-41 1.2E-45 323.9 29.7 301 4-336 9-350 (424)
45 TIGR03169 Nterm_to_SelD pyridi 100.0 3.4E-39 7.3E-44 307.1 31.2 305 7-341 1-318 (364)
46 KOG4716 Thioredoxin reductase 100.0 1.3E-37 2.7E-42 270.2 22.2 397 4-432 18-482 (503)
47 PRK10262 thioredoxin reductase 100.0 5.6E-37 1.2E-41 286.5 26.0 295 3-333 4-314 (321)
48 TIGR01292 TRX_reduct thioredox 100.0 1.6E-36 3.4E-41 281.8 28.5 285 6-331 1-298 (300)
49 KOG1346 Programmed cell death 100.0 4.4E-37 9.5E-42 273.6 22.5 407 5-424 178-652 (659)
50 TIGR03140 AhpF alkyl hydropero 100.0 1.3E-36 2.9E-41 299.9 25.1 289 4-332 211-511 (515)
51 COG0492 TrxB Thioredoxin reduc 100.0 9.6E-36 2.1E-40 269.7 24.6 289 4-332 2-299 (305)
52 TIGR03143 AhpF_homolog putativ 100.0 1.4E-35 3.1E-40 294.6 28.1 290 2-332 1-307 (555)
53 PRK15317 alkyl hydroperoxide r 100.0 1.8E-35 3.8E-40 292.3 26.5 289 5-333 211-511 (517)
54 TIGR01316 gltA glutamate synth 100.0 2.9E-35 6.3E-40 285.5 24.4 286 4-331 132-447 (449)
55 PRK12831 putative oxidoreducta 100.0 1.2E-34 2.6E-39 281.5 26.7 290 4-334 139-461 (464)
56 COG0446 HcaD Uncharacterized N 100.0 6.5E-32 1.4E-36 262.4 39.0 388 8-421 1-407 (415)
57 PRK09853 putative selenate red 100.0 1.2E-32 2.7E-37 280.1 28.0 282 4-334 538-842 (1019)
58 PRK12778 putative bifunctional 100.0 4.2E-33 9.2E-38 286.7 24.8 289 4-334 430-750 (752)
59 PRK11749 dihydropyrimidine deh 100.0 3.3E-32 7.1E-37 265.7 24.9 287 5-335 140-453 (457)
60 PRK12779 putative bifunctional 100.0 9.7E-32 2.1E-36 278.1 27.5 288 5-334 306-627 (944)
61 PRK12770 putative glutamate sy 100.0 1.2E-31 2.6E-36 253.2 25.8 290 4-333 17-349 (352)
62 KOG2495 NADH-dehydrogenase (ub 100.0 6.3E-32 1.4E-36 242.7 19.7 295 4-330 54-393 (491)
63 PRK12775 putative trifunctiona 100.0 3.9E-31 8.4E-36 276.2 25.6 290 5-335 430-756 (1006)
64 PRK12810 gltD glutamate syntha 100.0 5.8E-31 1.3E-35 257.2 24.0 293 5-335 143-466 (471)
65 TIGR03315 Se_ygfK putative sel 100.0 7E-30 1.5E-34 261.5 25.7 280 5-333 537-839 (1012)
66 PRK12814 putative NADPH-depend 100.0 7.8E-30 1.7E-34 257.4 24.1 287 5-337 193-504 (652)
67 TIGR01318 gltD_gamma_fam gluta 100.0 2.3E-29 5E-34 245.0 26.4 285 5-332 141-464 (467)
68 PRK12769 putative oxidoreducta 100.0 5E-29 1.1E-33 252.8 27.9 287 4-333 326-651 (654)
69 PRK13984 putative oxidoreducta 100.0 4.6E-29 9.9E-34 251.7 26.3 285 4-333 282-601 (604)
70 TIGR01317 GOGAT_sm_gam glutama 100.0 3.6E-29 7.8E-34 244.6 24.1 294 5-335 143-480 (485)
71 TIGR01372 soxA sarcosine oxida 100.0 1.3E-27 2.8E-32 251.4 30.4 280 5-333 163-471 (985)
72 COG3634 AhpF Alkyl hydroperoxi 100.0 1.1E-29 2.3E-34 221.9 10.7 289 5-330 211-511 (520)
73 PRK12809 putative oxidoreducta 100.0 1.9E-27 4.1E-32 240.2 26.9 287 4-333 309-634 (639)
74 PLN02852 ferredoxin-NADP+ redu 100.0 3.1E-27 6.8E-32 227.2 24.5 292 5-333 26-421 (491)
75 KOG0404 Thioredoxin reductase 100.0 4.5E-28 9.9E-33 199.1 15.0 278 2-302 5-296 (322)
76 PRK12771 putative glutamate sy 100.0 2.1E-26 4.5E-31 230.2 25.0 285 5-336 137-446 (564)
77 PLN02172 flavin-containing mon 99.9 3.8E-24 8.3E-29 206.8 23.0 286 4-332 9-351 (461)
78 KOG3851 Sulfide:quinone oxidor 99.9 2.9E-22 6.3E-27 173.7 17.4 306 4-336 38-363 (446)
79 KOG2755 Oxidoreductase [Genera 99.9 1E-22 2.2E-27 171.7 11.4 269 7-301 1-322 (334)
80 COG0493 GltD NADPH-dependent g 99.9 2.5E-21 5.4E-26 184.6 14.6 288 5-330 123-447 (457)
81 PF00743 FMO-like: Flavin-bind 99.9 1.6E-20 3.4E-25 184.0 19.7 298 6-332 2-395 (531)
82 PRK06567 putative bifunctional 99.8 1.5E-19 3.3E-24 182.5 23.4 283 4-331 382-767 (1028)
83 PF07992 Pyr_redox_2: Pyridine 99.8 1.1E-21 2.3E-26 171.0 0.6 188 7-302 1-200 (201)
84 COG3486 IucD Lysine/ornithine 99.8 4.8E-17 1E-21 147.0 22.8 292 1-302 1-389 (436)
85 PF13434 K_oxygenase: L-lysine 99.8 1.9E-18 4.1E-23 160.7 14.2 248 5-262 2-340 (341)
86 PF13738 Pyr_redox_3: Pyridine 99.8 2E-18 4.3E-23 150.6 10.3 177 9-198 1-202 (203)
87 KOG0399 Glutamate synthase [Am 99.7 2.6E-18 5.6E-23 170.0 8.8 286 5-331 1785-2117(2142)
88 COG2072 TrkA Predicted flavopr 99.7 5.3E-17 1.1E-21 156.6 17.6 187 1-199 4-211 (443)
89 PRK05329 anaerobic glycerol-3- 99.7 6.1E-16 1.3E-20 147.2 24.2 174 151-332 203-419 (422)
90 KOG1399 Flavin-containing mono 99.6 4.3E-15 9.3E-20 141.3 15.8 238 3-270 4-276 (448)
91 PTZ00188 adrenodoxin reductase 99.6 4.5E-14 9.7E-19 134.2 18.9 274 5-307 39-422 (506)
92 COG1148 HdrA Heterodisulfide r 99.6 5.8E-14 1.3E-18 129.2 18.5 198 112-329 298-540 (622)
93 KOG1800 Ferredoxin/adrenodoxin 99.5 1.4E-13 3E-18 123.1 14.6 290 5-332 20-405 (468)
94 PF00070 Pyr_redox: Pyridine n 99.5 1.6E-13 3.5E-18 99.8 11.3 80 165-247 1-80 (80)
95 COG2081 Predicted flavoprotein 99.5 1.9E-12 4.1E-17 117.9 15.3 81 180-263 86-169 (408)
96 TIGR03378 glycerol3P_GlpB glyc 99.3 2.9E-10 6.4E-15 107.1 20.8 125 200-329 258-418 (419)
97 COG4529 Uncharacterized protei 99.3 1.4E-09 3.1E-14 101.9 22.9 183 6-196 2-231 (474)
98 COG0029 NadB Aspartate oxidase 99.3 2.9E-11 6.3E-16 112.8 10.9 224 85-333 147-397 (518)
99 PF03486 HI0933_like: HI0933-l 99.2 6.7E-11 1.5E-15 112.5 8.9 85 177-263 81-166 (409)
100 COG0579 Predicted dehydrogenas 99.2 1.3E-09 2.7E-14 102.9 16.9 59 204-263 152-211 (429)
101 COG3075 GlpB Anaerobic glycero 99.2 8.7E-10 1.9E-14 97.3 14.6 128 200-332 253-416 (421)
102 PRK08401 L-aspartate oxidase; 99.1 3.9E-10 8.4E-15 110.6 10.8 54 275-331 309-364 (466)
103 PRK08275 putative oxidoreducta 99.1 1.8E-09 3.8E-14 108.3 15.0 37 5-42 9-45 (554)
104 PRK07804 L-aspartate oxidase; 99.1 1.1E-09 2.3E-14 109.3 13.4 35 5-42 16-50 (541)
105 PRK06854 adenylylsulfate reduc 99.1 1E-09 2.2E-14 110.7 13.0 35 5-42 11-47 (608)
106 PLN02463 lycopene beta cyclase 99.1 2.2E-08 4.7E-13 97.0 21.1 119 5-127 28-170 (447)
107 TIGR00551 nadB L-aspartate oxi 99.0 7E-10 1.5E-14 109.5 9.4 55 275-332 332-388 (488)
108 PRK09897 hypothetical protein; 99.0 4.7E-09 1E-13 103.2 14.3 167 6-185 2-213 (534)
109 PRK12842 putative succinate de 99.0 4.5E-10 9.7E-15 113.0 7.0 106 162-268 156-281 (574)
110 PRK07843 3-ketosteroid-delta-1 99.0 1.1E-09 2.3E-14 109.7 9.6 106 162-269 159-276 (557)
111 PRK13800 putative oxidoreducta 99.0 4.9E-09 1.1E-13 110.6 14.4 35 5-42 13-47 (897)
112 PRK08071 L-aspartate oxidase; 99.0 2.8E-09 6.2E-14 105.5 11.5 56 275-332 331-387 (510)
113 PRK06452 sdhA succinate dehydr 99.0 4.7E-09 1E-13 105.2 12.3 39 1-42 1-39 (566)
114 PRK11728 hydroxyglutarate oxid 99.0 3E-08 6.4E-13 95.6 17.4 57 204-263 148-204 (393)
115 PRK06069 sdhA succinate dehydr 99.0 1.3E-08 2.9E-13 102.5 15.3 39 1-42 1-42 (577)
116 PRK09077 L-aspartate oxidase; 98.9 3.4E-08 7.4E-13 98.6 17.3 55 275-332 352-408 (536)
117 PRK10157 putative oxidoreducta 98.9 5.4E-09 1.2E-13 101.5 11.2 125 1-128 1-166 (428)
118 TIGR01790 carotene-cycl lycope 98.9 4.6E-08 9.9E-13 94.2 17.1 116 7-126 1-141 (388)
119 PRK10015 oxidoreductase; Provi 98.9 9E-09 2E-13 99.8 11.8 124 1-127 1-165 (429)
120 PRK08773 2-octaprenyl-3-methyl 98.9 2.2E-08 4.9E-13 96.5 14.4 59 205-265 113-171 (392)
121 PF01266 DAO: FAD dependent ox 98.9 2.1E-08 4.6E-13 95.3 14.0 58 204-263 146-203 (358)
122 PRK06847 hypothetical protein; 98.9 7E-09 1.5E-13 99.4 10.4 124 2-128 1-165 (375)
123 PRK09231 fumarate reductase fl 98.9 1.7E-08 3.6E-13 101.6 13.3 72 259-332 339-413 (582)
124 TIGR01176 fum_red_Fp fumarate 98.9 5.8E-09 1.2E-13 104.6 9.8 56 275-332 356-412 (580)
125 COG0644 FixC Dehydrogenases (f 98.9 6.4E-09 1.4E-13 100.1 9.5 122 5-129 3-155 (396)
126 PRK07512 L-aspartate oxidase; 98.9 2E-08 4.4E-13 99.5 13.2 55 275-332 340-396 (513)
127 PRK06263 sdhA succinate dehydr 98.9 1.1E-08 2.3E-13 102.5 11.2 55 275-332 347-402 (543)
128 TIGR01812 sdhA_frdA_Gneg succi 98.9 5.1E-09 1.1E-13 105.6 8.7 56 275-332 341-401 (566)
129 PRK07190 hypothetical protein; 98.9 6.8E-09 1.5E-13 102.1 9.3 127 1-130 1-169 (487)
130 PRK08626 fumarate reductase fl 98.9 2.7E-09 5.9E-14 108.3 6.5 39 1-42 1-39 (657)
131 TIGR01292 TRX_reduct thioredox 98.9 4.1E-08 8.9E-13 91.0 13.5 99 165-266 2-115 (300)
132 PRK07395 L-aspartate oxidase; 98.9 1E-08 2.2E-13 102.3 9.5 54 275-330 346-400 (553)
133 PLN02815 L-aspartate oxidase 98.8 2.6E-08 5.6E-13 99.8 12.5 55 275-331 376-431 (594)
134 TIGR02061 aprA adenosine phosp 98.8 2.3E-08 5E-13 100.2 11.4 33 7-42 1-37 (614)
135 PRK06134 putative FAD-binding 98.8 2.6E-08 5.6E-13 100.3 11.9 104 163-267 161-283 (581)
136 PRK04176 ribulose-1,5-biphosph 98.8 2.8E-07 6.2E-12 82.6 17.3 175 155-333 17-254 (257)
137 PRK06834 hypothetical protein; 98.8 2.3E-08 4.9E-13 98.6 11.0 125 4-131 2-161 (488)
138 TIGR02734 crtI_fam phytoene de 98.8 3.6E-08 7.7E-13 98.2 12.3 57 205-262 219-275 (502)
139 COG1233 Phytoene dehydrogenase 98.8 7.3E-08 1.6E-12 95.0 13.7 57 204-261 223-279 (487)
140 COG1053 SdhA Succinate dehydro 98.8 9.3E-09 2E-13 101.6 7.2 39 1-42 2-40 (562)
141 TIGR02032 GG-red-SF geranylger 98.8 2.3E-08 4.9E-13 92.4 9.1 119 6-127 1-149 (295)
142 PRK04176 ribulose-1,5-biphosph 98.8 2.4E-08 5.2E-13 89.5 8.9 117 5-126 25-173 (257)
143 PTZ00363 rab-GDP dissociation 98.8 4E-07 8.6E-12 87.9 17.6 61 204-264 231-291 (443)
144 PRK00711 D-amino acid dehydrog 98.8 3.1E-07 6.7E-12 89.3 17.1 58 204-263 200-257 (416)
145 TIGR00292 thiazole biosynthesi 98.8 4.8E-08 1E-12 87.3 10.1 116 5-125 21-169 (254)
146 TIGR00292 thiazole biosynthesi 98.8 9.1E-07 2E-11 79.1 17.9 172 157-332 15-252 (254)
147 PRK13977 myosin-cross-reactive 98.7 3.1E-07 6.6E-12 89.8 15.8 89 173-261 192-291 (576)
148 PRK06184 hypothetical protein; 98.7 4.1E-08 8.8E-13 97.7 10.1 123 4-129 2-171 (502)
149 PRK08274 tricarballylate dehyd 98.7 3E-07 6.5E-12 90.7 15.8 65 204-269 130-199 (466)
150 PRK12409 D-amino acid dehydrog 98.7 2.9E-07 6.4E-12 89.3 15.5 56 205-262 197-257 (410)
151 PRK07494 2-octaprenyl-6-methox 98.7 4.6E-08 9.9E-13 94.2 9.7 39 1-42 3-41 (388)
152 PRK07251 pyridine nucleotide-d 98.7 2.7E-08 5.9E-13 97.2 8.1 99 5-129 157-256 (438)
153 TIGR01373 soxB sarcosine oxida 98.7 1.1E-06 2.4E-11 85.2 19.0 57 204-261 182-238 (407)
154 PRK09126 hypothetical protein; 98.7 4.4E-08 9.6E-13 94.5 9.0 125 1-130 1-171 (392)
155 PLN02612 phytoene desaturase 98.7 3.7E-07 8.1E-12 91.6 15.7 57 204-260 307-363 (567)
156 PRK07045 putative monooxygenas 98.7 4.5E-08 9.8E-13 94.2 8.8 124 1-127 1-166 (388)
157 PTZ00383 malate:quinone oxidor 98.7 2.8E-07 6.1E-12 90.3 14.3 57 204-262 210-272 (497)
158 TIGR01377 soxA_mon sarcosine o 98.7 7E-07 1.5E-11 85.8 17.0 56 204-262 144-199 (380)
159 TIGR01811 sdhA_Bsu succinate d 98.7 1.9E-07 4.2E-12 94.2 13.5 54 275-331 369-423 (603)
160 PRK08163 salicylate hydroxylas 98.7 6E-07 1.3E-11 86.7 16.4 59 205-265 109-168 (396)
161 COG2509 Uncharacterized FAD-de 98.7 4.3E-07 9.3E-12 84.4 14.3 85 182-267 150-234 (486)
162 TIGR00275 flavoprotein, HI0933 98.7 3.3E-07 7.1E-12 88.2 14.1 82 177-262 77-159 (400)
163 PRK08020 ubiF 2-octaprenyl-3-m 98.7 9.5E-08 2.1E-12 92.1 10.4 125 1-128 1-171 (391)
164 PRK11259 solA N-methyltryptoph 98.7 8.7E-07 1.9E-11 85.0 16.9 56 204-262 148-203 (376)
165 PRK07333 2-octaprenyl-6-methox 98.7 8E-08 1.7E-12 93.1 9.7 123 5-130 1-171 (403)
166 PF04820 Trp_halogenase: Trypt 98.7 6.4E-08 1.4E-12 94.3 9.0 58 205-263 154-211 (454)
167 TIGR03329 Phn_aa_oxid putative 98.7 3.5E-07 7.6E-12 89.9 14.1 54 204-261 182-235 (460)
168 PRK07236 hypothetical protein; 98.7 2.1E-07 4.5E-12 89.5 11.9 122 3-127 4-155 (386)
169 TIGR01350 lipoamide_DH dihydro 98.7 2.5E-07 5.5E-12 91.1 12.8 99 5-129 170-272 (461)
170 TIGR03364 HpnW_proposed FAD de 98.7 6.7E-07 1.5E-11 85.4 15.3 52 204-262 144-196 (365)
171 COG0654 UbiH 2-polyprenyl-6-me 98.7 5.7E-07 1.2E-11 86.4 14.6 59 204-264 103-163 (387)
172 TIGR02731 phytoene_desat phyto 98.7 3.8E-07 8.2E-12 89.7 13.6 58 204-261 212-274 (453)
173 PRK08244 hypothetical protein; 98.7 9.7E-08 2.1E-12 94.8 9.5 123 5-130 2-163 (493)
174 COG1635 THI4 Ribulose 1,5-bisp 98.6 9.2E-08 2E-12 80.1 7.1 35 5-42 30-64 (262)
175 PRK06185 hypothetical protein; 98.6 1.2E-07 2.6E-12 91.9 9.2 39 1-42 1-40 (407)
176 PRK05192 tRNA uridine 5-carbox 98.6 2.1E-07 4.7E-12 91.8 10.7 119 3-125 2-156 (618)
177 PRK08850 2-octaprenyl-6-methox 98.6 1.3E-07 2.8E-12 91.6 8.9 125 1-129 1-171 (405)
178 PRK15317 alkyl hydroperoxide r 98.6 1.4E-06 3.1E-11 86.9 16.3 101 163-265 211-324 (517)
179 PF13738 Pyr_redox_3: Pyridine 98.6 7E-07 1.5E-11 77.6 12.4 98 167-266 1-143 (203)
180 PRK08013 oxidoreductase; Provi 98.6 1.3E-07 2.8E-12 91.4 8.4 122 5-129 3-171 (400)
181 TIGR03140 AhpF alkyl hydropero 98.6 1.5E-06 3.1E-11 86.7 16.0 102 162-265 211-325 (515)
182 PF05834 Lycopene_cycl: Lycope 98.6 1.9E-07 4.2E-12 89.0 9.3 116 7-127 1-143 (374)
183 PRK08849 2-octaprenyl-3-methyl 98.6 1.5E-07 3.2E-12 90.4 8.6 123 5-130 3-171 (384)
184 PRK01747 mnmC bifunctional tRN 98.6 8.3E-07 1.8E-11 91.2 14.2 57 204-263 407-463 (662)
185 PRK05714 2-octaprenyl-3-methyl 98.6 1.9E-07 4.1E-12 90.4 8.8 123 5-130 2-172 (405)
186 COG0665 DadA Glycine/D-amino a 98.6 2.3E-06 5E-11 82.4 16.3 56 204-262 155-211 (387)
187 PRK06126 hypothetical protein; 98.6 3.7E-07 8.1E-12 91.9 10.9 37 3-42 5-41 (545)
188 PRK06481 fumarate reductase fl 98.6 1.9E-06 4.1E-11 85.6 15.6 64 204-268 189-257 (506)
189 PF02852 Pyr_redox_dim: Pyridi 98.6 6.4E-08 1.4E-12 74.9 4.0 57 377-433 46-105 (110)
190 PLN02172 flavin-containing mon 98.6 2.5E-06 5.4E-11 83.3 15.9 135 162-299 9-214 (461)
191 TIGR01988 Ubi-OHases Ubiquinon 98.6 2.7E-06 5.9E-11 81.8 16.1 58 205-264 106-164 (385)
192 PF13454 NAD_binding_9: FAD-NA 98.5 8.2E-07 1.8E-11 73.4 10.7 34 9-42 1-36 (156)
193 PRK07364 2-octaprenyl-6-methox 98.5 2.8E-07 6E-12 89.6 9.1 36 4-42 17-52 (415)
194 PRK08132 FAD-dependent oxidore 98.5 3.2E-07 6.8E-12 92.3 9.4 36 4-42 22-57 (547)
195 PRK07608 ubiquinone biosynthes 98.5 2.8E-07 6.1E-12 88.8 8.7 36 5-43 5-40 (388)
196 PRK06183 mhpA 3-(3-hydroxyphen 98.5 5E-07 1.1E-11 90.6 10.7 36 4-42 9-44 (538)
197 PRK07233 hypothetical protein; 98.5 5.8E-07 1.3E-11 87.9 11.0 55 205-261 198-252 (434)
198 PRK05732 2-octaprenyl-6-methox 98.5 2.9E-07 6.3E-12 88.9 8.4 44 85-128 126-171 (395)
199 PRK09754 phenylpropionate diox 98.5 8.1E-07 1.8E-11 85.6 11.4 99 163-265 3-114 (396)
200 PLN02697 lycopene epsilon cycl 98.5 2.9E-07 6.3E-12 90.7 8.3 116 5-126 108-248 (529)
201 PRK11445 putative oxidoreducta 98.5 5.7E-07 1.2E-11 85.2 10.0 119 6-128 2-159 (351)
202 TIGR02730 carot_isom carotene 98.5 1.4E-07 3.1E-12 93.5 6.1 56 205-261 229-284 (493)
203 PRK07121 hypothetical protein; 98.5 5.4E-06 1.2E-10 82.3 17.3 66 204-269 176-246 (492)
204 PRK05868 hypothetical protein; 98.5 5.7E-07 1.2E-11 85.9 9.9 119 6-127 2-161 (372)
205 PLN00093 geranylgeranyl diphos 98.5 5.3E-07 1.2E-11 87.8 9.7 37 3-42 37-73 (450)
206 PF00070 Pyr_redox: Pyridine n 98.5 3.3E-07 7.1E-12 66.4 6.3 78 7-110 1-80 (80)
207 TIGR02733 desat_CrtD C-3',4' d 98.5 9.6E-07 2.1E-11 87.8 11.5 57 204-261 231-292 (492)
208 PRK11101 glpA sn-glycerol-3-ph 98.5 2.9E-07 6.3E-12 92.1 7.5 58 204-262 148-210 (546)
209 KOG2415 Electron transfer flav 98.5 2.5E-06 5.4E-11 78.2 12.6 58 205-262 183-255 (621)
210 KOG2820 FAD-dependent oxidored 98.5 2.5E-07 5.5E-12 82.4 6.0 58 204-261 152-210 (399)
211 PRK11883 protoporphyrinogen ox 98.5 6.2E-06 1.3E-10 81.2 16.7 55 205-261 218-273 (451)
212 PRK06753 hypothetical protein; 98.5 1.4E-06 3.1E-11 83.4 11.8 118 7-127 2-153 (373)
213 TIGR00562 proto_IX_ox protopor 98.5 4.6E-06 9.9E-11 82.4 15.3 40 220-261 238-277 (462)
214 TIGR02023 BchP-ChlP geranylger 98.5 5.1E-07 1.1E-11 86.9 8.2 32 6-40 1-32 (388)
215 PRK07588 hypothetical protein; 98.4 1.1E-06 2.5E-11 84.6 10.6 121 6-129 1-161 (391)
216 PRK05257 malate:quinone oxidor 98.4 1.6E-05 3.6E-10 78.2 18.6 58 204-262 182-245 (494)
217 PF00890 FAD_binding_2: FAD bi 98.4 5.9E-07 1.3E-11 87.4 8.4 60 204-264 140-204 (417)
218 PRK06847 hypothetical protein; 98.4 4E-06 8.6E-11 80.4 13.9 102 163-266 4-166 (375)
219 PF12831 FAD_oxidored: FAD dep 98.4 2.3E-07 4.9E-12 90.2 5.1 115 7-124 1-148 (428)
220 TIGR03385 CoA_CoA_reduc CoA-di 98.4 1.1E-06 2.4E-11 85.7 9.7 100 5-129 137-236 (427)
221 TIGR01789 lycopene_cycl lycope 98.4 1.9E-06 4.2E-11 81.9 11.0 112 7-126 1-138 (370)
222 PRK06175 L-aspartate oxidase; 98.4 9.6E-07 2.1E-11 85.8 9.1 54 275-331 330-385 (433)
223 PF01134 GIDA: Glucose inhibit 98.4 6.5E-07 1.4E-11 83.8 7.3 113 7-124 1-150 (392)
224 COG1232 HemY Protoporphyrinoge 98.4 1.9E-06 4.1E-11 82.3 10.6 56 204-261 211-266 (444)
225 PF01494 FAD_binding_3: FAD bi 98.4 3.4E-07 7.4E-12 86.9 5.7 34 6-42 2-35 (356)
226 TIGR01984 UbiH 2-polyprenyl-6- 98.4 7.3E-07 1.6E-11 85.7 7.9 118 7-127 1-163 (382)
227 PTZ00139 Succinate dehydrogena 98.4 8E-06 1.7E-10 82.8 15.6 57 204-260 165-226 (617)
228 PRK09564 coenzyme A disulfide 98.4 2.4E-06 5.3E-11 83.8 11.6 101 164-266 1-118 (444)
229 PRK06996 hypothetical protein; 98.4 9.1E-07 2E-11 85.4 8.4 123 1-124 7-172 (398)
230 PF01946 Thi4: Thi4 family; PD 98.4 4.6E-07 9.9E-12 76.5 5.1 35 5-42 17-51 (230)
231 PRK09078 sdhA succinate dehydr 98.4 7.8E-06 1.7E-10 82.8 14.8 58 204-261 148-210 (598)
232 PLN02661 Putative thiazole syn 98.4 1.5E-06 3.2E-11 80.1 8.7 36 5-43 92-128 (357)
233 PRK13339 malate:quinone oxidor 98.4 6.7E-06 1.5E-10 80.4 13.7 59 204-263 183-247 (497)
234 PRK06912 acoL dihydrolipoamide 98.4 1.8E-06 4E-11 84.8 9.9 99 5-129 170-271 (458)
235 COG1635 THI4 Ribulose 1,5-bisp 98.4 3.3E-05 7.1E-10 65.1 15.4 169 160-332 27-258 (262)
236 PRK05945 sdhA succinate dehydr 98.4 1.6E-06 3.5E-11 87.5 9.4 38 4-42 2-39 (575)
237 TIGR01989 COQ6 Ubiquinone bios 98.4 1.8E-06 3.8E-11 84.4 9.4 45 86-130 134-187 (437)
238 COG2907 Predicted NAD/FAD-bind 98.4 2.2E-05 4.7E-10 70.6 15.1 64 203-268 215-278 (447)
239 PRK04965 NADH:flavorubredoxin 98.3 2.1E-06 4.4E-11 82.3 9.5 99 5-128 141-241 (377)
240 PRK08205 sdhA succinate dehydr 98.3 1.9E-06 4.1E-11 87.0 9.6 38 1-42 1-38 (583)
241 TIGR02732 zeta_caro_desat caro 98.3 2.1E-05 4.5E-10 77.5 16.5 58 204-261 218-282 (474)
242 TIGR01320 mal_quin_oxido malat 98.3 2.3E-05 5E-10 77.1 16.7 58 204-262 177-239 (483)
243 PRK08958 sdhA succinate dehydr 98.3 8.7E-06 1.9E-10 82.2 13.9 58 204-261 142-204 (588)
244 TIGR02028 ChlP geranylgeranyl 98.3 2.3E-06 4.9E-11 82.5 9.2 34 6-42 1-34 (398)
245 PRK07057 sdhA succinate dehydr 98.3 2E-05 4.4E-10 79.7 16.1 58 204-261 147-209 (591)
246 PRK10262 thioredoxin reductase 98.3 2.4E-05 5.1E-10 73.3 15.5 100 162-265 5-119 (321)
247 PF01134 GIDA: Glucose inhibit 98.3 8.3E-06 1.8E-10 76.5 11.9 95 165-261 1-150 (392)
248 PRK05976 dihydrolipoamide dehy 98.3 3.1E-06 6.6E-11 83.6 9.5 99 5-129 180-284 (472)
249 PRK06416 dihydrolipoamide dehy 98.3 3E-06 6.4E-11 83.6 9.3 99 5-129 172-275 (462)
250 COG1249 Lpd Pyruvate/2-oxoglut 98.3 4.1E-06 8.8E-11 80.8 9.9 100 5-130 173-276 (454)
251 TIGR03169 Nterm_to_SelD pyridi 98.3 4.4E-06 9.4E-11 79.7 10.1 97 165-266 1-110 (364)
252 COG0644 FixC Dehydrogenases (f 98.3 6E-05 1.3E-09 72.7 17.8 97 164-261 4-150 (396)
253 COG3380 Predicted NAD/FAD-depe 98.3 3.2E-06 7E-11 73.3 7.9 34 6-42 2-35 (331)
254 PRK06617 2-octaprenyl-6-methox 98.3 1.7E-06 3.7E-11 82.8 7.1 33 6-41 2-34 (374)
255 PLN00128 Succinate dehydrogena 98.3 2.3E-05 4.9E-10 79.6 15.4 57 204-260 186-247 (635)
256 TIGR02374 nitri_red_nirB nitri 98.3 3.4E-06 7.3E-11 88.0 9.7 97 166-266 1-111 (785)
257 PRK08641 sdhA succinate dehydr 98.3 1.7E-05 3.7E-10 80.2 14.4 58 204-261 132-198 (589)
258 COG0578 GlpA Glycerol-3-phosph 98.3 1.8E-06 4E-11 83.5 7.0 56 204-261 163-223 (532)
259 PRK14694 putative mercuric red 98.3 4.4E-06 9.6E-11 82.3 9.9 98 5-129 178-276 (468)
260 PRK07236 hypothetical protein; 98.3 8.4E-06 1.8E-10 78.4 11.5 102 162-265 5-156 (386)
261 PTZ00318 NADH dehydrogenase-li 98.3 6.6E-06 1.4E-10 80.0 10.8 102 162-266 9-128 (424)
262 PLN02576 protoporphyrinogen ox 98.3 4.1E-05 8.8E-10 76.3 16.7 38 4-44 11-49 (496)
263 PF07992 Pyr_redox_2: Pyridine 98.3 2.1E-06 4.5E-11 74.5 6.6 103 165-268 1-127 (201)
264 COG1252 Ndh NADH dehydrogenase 98.3 4.5E-06 9.8E-11 78.5 9.1 100 163-267 3-115 (405)
265 PRK07538 hypothetical protein; 98.3 3.7E-06 8.1E-11 81.6 9.0 33 7-42 2-34 (413)
266 PRK07803 sdhA succinate dehydr 98.2 3.5E-06 7.7E-11 85.6 9.0 35 5-42 8-42 (626)
267 PF13450 NAD_binding_8: NAD(P) 98.2 1.5E-06 3.2E-11 60.4 4.4 31 10-43 1-31 (68)
268 PRK13512 coenzyme A disulfide 98.2 3.8E-06 8.1E-11 82.1 8.9 96 6-129 149-244 (438)
269 PRK07846 mycothione reductase; 98.2 6E-06 1.3E-10 80.9 9.9 98 5-129 166-265 (451)
270 PRK06116 glutathione reductase 98.2 5.2E-06 1.1E-10 81.5 9.5 99 5-129 167-268 (450)
271 TIGR02360 pbenz_hydroxyl 4-hyd 98.2 3.6E-06 7.7E-11 81.0 8.2 35 5-42 2-36 (390)
272 PRK14989 nitrite reductase sub 98.2 8.1E-06 1.7E-10 85.4 11.3 100 163-266 3-116 (847)
273 TIGR01424 gluta_reduc_2 glutat 98.2 5.4E-06 1.2E-10 81.2 9.2 99 5-129 166-266 (446)
274 PRK05249 soluble pyridine nucl 98.2 7.9E-06 1.7E-10 80.6 10.5 99 5-129 175-275 (461)
275 PRK06475 salicylate hydroxylas 98.2 5.4E-06 1.2E-10 80.1 9.1 34 6-42 3-36 (400)
276 TIGR02053 MerA mercuric reduct 98.2 6.1E-06 1.3E-10 81.4 9.5 99 5-129 166-269 (463)
277 TIGR02032 GG-red-SF geranylger 98.2 2.3E-05 4.9E-10 72.4 12.8 97 165-263 2-148 (295)
278 PF14759 Reductase_C: Reductas 98.2 1.9E-05 4.2E-10 57.6 9.7 79 346-430 1-81 (85)
279 PRK12779 putative bifunctional 98.2 5.3E-06 1.1E-10 87.6 9.5 93 162-264 305-406 (944)
280 PRK12770 putative glutamate sy 98.2 5E-06 1.1E-10 78.8 8.5 101 162-262 17-129 (352)
281 PLN02487 zeta-carotene desatur 98.2 1.7E-05 3.6E-10 79.2 12.4 60 203-262 293-359 (569)
282 PRK08243 4-hydroxybenzoate 3-m 98.2 6.4E-06 1.4E-10 79.4 9.3 35 5-42 2-36 (392)
283 PRK08294 phenol 2-monooxygenas 98.2 8.7E-06 1.9E-10 82.8 10.6 37 3-42 30-67 (634)
284 PRK07573 sdhA succinate dehydr 98.2 1E-05 2.2E-10 82.4 11.0 35 5-42 35-69 (640)
285 PLN02661 Putative thiazole syn 98.2 0.00014 3.1E-09 67.2 17.4 173 156-333 85-327 (357)
286 PLN02463 lycopene beta cyclase 98.2 2E-05 4.3E-10 76.6 12.5 98 164-264 29-170 (447)
287 TIGR01813 flavo_cyto_c flavocy 98.2 7.6E-06 1.6E-10 80.2 9.8 33 7-42 1-34 (439)
288 PRK09853 putative selenate red 98.2 1.1E-05 2.4E-10 84.3 11.4 91 162-264 538-636 (1019)
289 PRK07818 dihydrolipoamide dehy 98.2 6.8E-06 1.5E-10 81.0 9.4 99 5-129 172-276 (466)
290 PRK06370 mercuric reductase; V 98.2 6.9E-06 1.5E-10 80.9 9.4 99 5-129 171-274 (463)
291 TIGR03219 salicylate_mono sali 98.2 1.6E-05 3.4E-10 77.3 11.7 33 7-42 2-35 (414)
292 PRK11749 dihydropyrimidine deh 98.2 6.2E-06 1.3E-10 81.1 8.6 90 162-262 139-236 (457)
293 TIGR01421 gluta_reduc_1 glutat 98.2 8.6E-06 1.9E-10 79.8 9.5 99 5-129 166-268 (450)
294 PRK12839 hypothetical protein; 98.2 6.5E-05 1.4E-09 75.6 15.9 66 204-269 213-283 (572)
295 COG1231 Monoamine oxidase [Ami 98.2 5.1E-05 1.1E-09 71.3 13.8 38 4-44 6-43 (450)
296 PRK06327 dihydrolipoamide dehy 98.2 1.1E-05 2.4E-10 79.6 10.2 99 5-129 183-287 (475)
297 TIGR03143 AhpF_homolog putativ 98.2 3.1E-05 6.7E-10 77.9 13.4 99 164-266 5-117 (555)
298 PRK12843 putative FAD-binding 98.2 9.9E-06 2.2E-10 81.8 9.9 65 204-269 220-289 (578)
299 PLN02464 glycerol-3-phosphate 98.1 8.2E-06 1.8E-10 82.9 9.2 59 204-262 231-295 (627)
300 PRK07845 flavoprotein disulfid 98.1 1.2E-05 2.7E-10 79.1 9.5 98 6-129 178-277 (466)
301 COG0492 TrxB Thioredoxin reduc 98.1 0.0001 2.2E-09 67.7 14.5 98 164-265 4-117 (305)
302 PRK06115 dihydrolipoamide dehy 98.1 1.2E-05 2.7E-10 79.1 9.2 99 5-129 174-279 (466)
303 COG0445 GidA Flavin-dependent 98.1 5.6E-06 1.2E-10 78.9 6.4 118 3-125 2-157 (621)
304 PRK06834 hypothetical protein; 98.1 5.2E-05 1.1E-09 74.9 13.5 100 164-265 4-158 (488)
305 PF00743 FMO-like: Flavin-bind 98.1 5.3E-05 1.1E-09 75.2 13.5 137 164-300 2-194 (531)
306 TIGR01316 gltA glutamate synth 98.1 8.4E-06 1.8E-10 79.8 7.8 92 162-264 132-232 (449)
307 PLN02507 glutathione reductase 98.1 1.5E-05 3.3E-10 78.9 9.5 99 5-129 203-303 (499)
308 TIGR00136 gidA glucose-inhibit 98.1 2E-05 4.4E-10 78.0 10.0 33 6-41 1-33 (617)
309 COG0446 HcaD Uncharacterized N 98.1 1.2E-05 2.7E-10 78.0 8.7 97 6-127 137-238 (415)
310 TIGR03452 mycothione_red mycot 98.1 2E-05 4.4E-10 77.2 10.0 98 5-129 169-268 (452)
311 PRK07208 hypothetical protein; 98.1 5.9E-06 1.3E-10 82.0 5.9 57 205-261 218-278 (479)
312 TIGR02485 CobZ_N-term precorri 98.0 6.3E-05 1.4E-09 73.5 12.9 66 204-269 122-190 (432)
313 PRK08010 pyridine nucleotide-d 98.0 2E-05 4.3E-10 77.2 9.4 99 5-129 158-257 (441)
314 PTZ00052 thioredoxin reductase 98.0 2.3E-05 5E-10 77.7 9.9 98 5-129 182-281 (499)
315 PRK07045 putative monooxygenas 98.0 7.1E-05 1.5E-09 72.1 13.0 103 163-265 5-167 (388)
316 PRK08244 hypothetical protein; 98.0 7.1E-05 1.5E-09 74.4 13.3 102 164-265 3-161 (493)
317 PRK13748 putative mercuric red 98.0 2.1E-05 4.5E-10 79.6 9.6 97 5-129 270-368 (561)
318 TIGR01423 trypano_reduc trypan 98.0 2E-05 4.3E-10 77.7 9.1 99 5-129 187-291 (486)
319 COG2072 TrkA Predicted flavopr 98.0 0.00017 3.7E-09 70.2 15.2 137 163-300 8-186 (443)
320 PRK12831 putative oxidoreducta 98.0 1.5E-05 3.2E-10 78.2 7.9 93 162-264 139-242 (464)
321 TIGR01318 gltD_gamma_fam gluta 98.0 1.9E-05 4.2E-10 77.6 8.7 92 162-264 140-239 (467)
322 PRK14727 putative mercuric red 98.0 2.5E-05 5.4E-10 77.2 9.4 97 5-129 188-286 (479)
323 PRK05714 2-octaprenyl-3-methyl 98.0 8.5E-05 1.8E-09 72.0 13.0 100 164-265 3-170 (405)
324 PLN02568 polyamine oxidase 98.0 7.8E-06 1.7E-10 81.3 5.8 43 1-43 1-45 (539)
325 PRK13369 glycerol-3-phosphate 98.0 7.5E-06 1.6E-10 81.4 5.7 57 204-262 154-214 (502)
326 PRK07333 2-octaprenyl-6-methox 98.0 0.00011 2.4E-09 71.2 13.6 99 165-265 3-169 (403)
327 TIGR01438 TGR thioredoxin and 98.0 3.2E-05 7E-10 76.3 9.9 98 5-129 180-282 (484)
328 PLN02852 ferredoxin-NADP+ redu 98.0 2.3E-05 5E-10 76.5 8.5 91 162-263 25-126 (491)
329 PRK09126 hypothetical protein; 98.0 0.00011 2.4E-09 70.9 13.3 101 164-266 4-170 (392)
330 PRK06292 dihydrolipoamide dehy 98.0 2.9E-05 6.4E-10 76.5 9.1 98 5-129 169-271 (460)
331 KOG1336 Monodehydroascorbate/f 98.0 2.6E-05 5.6E-10 73.3 8.0 101 5-130 213-317 (478)
332 TIGR01984 UbiH 2-polyprenyl-6- 97.9 0.00013 2.9E-09 70.0 13.0 97 165-263 1-162 (382)
333 PRK10157 putative oxidoreducta 97.9 0.00014 3.1E-09 70.7 13.2 97 164-262 6-163 (428)
334 PRK05868 hypothetical protein; 97.9 0.00011 2.4E-09 70.1 12.3 100 164-265 2-162 (372)
335 PTZ00058 glutathione reductase 97.9 4.1E-05 9E-10 76.4 9.5 99 5-129 237-339 (561)
336 KOG0029 Amine oxidase [Seconda 97.9 1.2E-05 2.6E-10 78.7 5.4 39 3-44 13-51 (501)
337 PRK07608 ubiquinone biosynthes 97.9 0.00014 3.1E-09 70.0 12.9 98 164-264 6-168 (388)
338 TIGR01317 GOGAT_sm_gam glutama 97.9 3.3E-05 7.1E-10 76.3 8.6 89 163-262 143-239 (485)
339 PRK07588 hypothetical protein; 97.9 0.00011 2.4E-09 70.8 12.1 98 165-265 2-160 (391)
340 PRK12778 putative bifunctional 97.9 2.9E-05 6.4E-10 81.0 8.5 94 162-265 430-532 (752)
341 KOG2844 Dimethylglycine dehydr 97.9 0.00012 2.7E-09 71.3 11.9 72 187-263 172-243 (856)
342 PRK06184 hypothetical protein; 97.9 0.00015 3.3E-09 72.3 13.2 98 164-263 4-168 (502)
343 PF01946 Thi4: Thi4 family; PD 97.9 0.00026 5.7E-09 60.1 12.4 110 156-265 10-167 (230)
344 PLN02697 lycopene epsilon cycl 97.9 0.00016 3.5E-09 71.5 13.0 98 164-263 109-248 (529)
345 PTZ00306 NADH-dependent fumara 97.9 0.00021 4.6E-09 77.9 15.0 36 4-42 408-443 (1167)
346 PRK01438 murD UDP-N-acetylmura 97.9 5.4E-05 1.2E-09 75.0 9.8 81 162-268 15-95 (480)
347 PRK12266 glpD glycerol-3-phosp 97.9 1.4E-05 3.1E-10 79.3 5.4 57 204-262 154-215 (508)
348 TIGR03315 Se_ygfK putative sel 97.9 5.6E-05 1.2E-09 79.5 9.7 90 163-264 537-634 (1012)
349 PRK06753 hypothetical protein; 97.9 0.00014 3E-09 69.6 11.8 100 165-266 2-155 (373)
350 PRK05192 tRNA uridine 5-carbox 97.9 0.00015 3.2E-09 72.1 12.0 96 164-261 5-155 (618)
351 PRK06467 dihydrolipoamide dehy 97.9 6.6E-05 1.4E-09 74.1 9.5 98 5-129 174-277 (471)
352 KOG4254 Phytoene desaturase [C 97.9 3.6E-05 7.9E-10 71.6 6.9 55 205-260 264-318 (561)
353 PRK07190 hypothetical protein; 97.9 0.00027 6E-09 69.8 13.6 98 164-263 6-165 (487)
354 TIGR01790 carotene-cycl lycope 97.9 0.00026 5.6E-09 68.2 13.1 97 165-263 1-141 (388)
355 PF01494 FAD_binding_3: FAD bi 97.8 0.00019 4.1E-09 68.0 11.8 101 165-265 3-174 (356)
356 KOG1399 Flavin-containing mono 97.8 0.00046 9.9E-09 66.6 14.0 136 163-299 6-196 (448)
357 PRK08849 2-octaprenyl-3-methyl 97.8 0.00029 6.2E-09 67.7 12.9 101 164-266 4-170 (384)
358 PRK12775 putative trifunctiona 97.8 5.3E-05 1.2E-09 80.9 8.4 92 163-264 430-531 (1006)
359 PRK12809 putative oxidoreducta 97.8 5.3E-05 1.2E-09 77.5 8.1 91 162-263 309-407 (639)
360 PRK07364 2-octaprenyl-6-methox 97.8 0.00032 6.9E-09 68.3 13.0 101 163-265 18-183 (415)
361 PRK08013 oxidoreductase; Provi 97.8 0.00036 7.8E-09 67.5 13.0 100 164-265 4-170 (400)
362 PRK12810 gltD glutamate syntha 97.8 6.6E-05 1.4E-09 74.1 7.9 90 162-262 142-239 (471)
363 PRK06617 2-octaprenyl-6-methox 97.8 0.0004 8.8E-09 66.5 12.9 98 165-265 3-162 (374)
364 PRK08020 ubiF 2-octaprenyl-3-m 97.8 0.00046 9.9E-09 66.6 13.3 100 164-265 6-171 (391)
365 PRK10015 oxidoreductase; Provi 97.8 0.00049 1.1E-08 67.0 13.3 98 164-263 6-164 (429)
366 KOG2404 Fumarate reductase, fl 97.8 0.0001 2.3E-09 65.6 7.6 72 186-260 122-203 (477)
367 KOG2665 Predicted FAD-dependen 97.7 6.5E-05 1.4E-09 66.7 6.2 58 207-264 198-258 (453)
368 PRK08850 2-octaprenyl-6-methox 97.7 0.00045 9.9E-09 66.9 12.7 101 163-265 4-170 (405)
369 PRK08132 FAD-dependent oxidore 97.7 0.0005 1.1E-08 69.3 13.3 103 163-265 23-187 (547)
370 PRK06475 salicylate hydroxylas 97.7 0.00063 1.4E-08 65.8 13.4 100 164-265 3-169 (400)
371 PRK09897 hypothetical protein; 97.7 0.00065 1.4E-08 67.3 13.5 99 164-264 2-167 (534)
372 TIGR00136 gidA glucose-inhibit 97.7 0.00057 1.2E-08 67.9 12.9 97 165-262 2-153 (617)
373 PRK12814 putative NADPH-depend 97.7 0.00011 2.3E-09 75.3 8.2 92 162-264 192-291 (652)
374 PRK12769 putative oxidoreducta 97.7 0.00011 2.4E-09 75.5 8.3 91 162-263 326-424 (654)
375 PTZ00153 lipoamide dehydrogena 97.7 0.00016 3.4E-09 73.5 9.1 99 5-129 312-430 (659)
376 PTZ00188 adrenodoxin reductase 97.7 0.0002 4.4E-09 69.1 9.3 92 162-264 38-139 (506)
377 COG3573 Predicted oxidoreducta 97.7 0.0002 4.4E-09 64.1 8.5 37 3-42 3-39 (552)
378 PLN02546 glutathione reductase 97.7 0.00016 3.6E-09 72.2 9.0 99 5-129 252-353 (558)
379 KOG0404 Thioredoxin reductase 97.7 0.00037 8E-09 58.9 9.4 97 163-263 8-124 (322)
380 TIGR01372 soxA sarcosine oxida 97.7 0.00055 1.2E-08 73.6 13.2 101 163-265 163-288 (985)
381 TIGR00031 UDP-GALP_mutase UDP- 97.7 6E-05 1.3E-09 71.2 5.3 35 6-43 2-36 (377)
382 PLN02985 squalene monooxygenas 97.7 5.9E-05 1.3E-09 74.9 5.4 36 4-42 42-77 (514)
383 PRK06183 mhpA 3-(3-hydroxyphen 97.6 0.0007 1.5E-08 68.1 13.0 100 163-264 10-175 (538)
384 PLN02268 probable polyamine ox 97.6 6.2E-05 1.3E-09 73.7 5.3 41 219-261 210-250 (435)
385 PRK05335 tRNA (uracil-5-)-meth 97.6 6.8E-05 1.5E-09 71.1 5.2 34 6-42 3-36 (436)
386 TIGR01789 lycopene_cycl lycope 97.6 0.00032 6.9E-09 66.8 9.8 93 166-264 2-139 (370)
387 TIGR03219 salicylate_mono sali 97.6 0.00042 9.1E-09 67.4 10.8 98 165-264 2-160 (414)
388 PF12831 FAD_oxidored: FAD dep 97.6 4.6E-05 1E-09 74.1 4.0 95 166-261 2-148 (428)
389 PF06039 Mqo: Malate:quinone o 97.6 6.3E-05 1.4E-09 71.0 4.5 82 206-288 182-272 (488)
390 PRK01438 murD UDP-N-acetylmura 97.6 0.00031 6.7E-09 69.6 9.7 135 5-192 16-154 (480)
391 PRK07494 2-octaprenyl-6-methox 97.6 0.0009 1.9E-08 64.5 12.6 99 163-264 7-168 (388)
392 TIGR01813 flavo_cyto_c flavocy 97.6 0.0011 2.4E-08 64.9 13.4 63 207-269 132-199 (439)
393 PRK05732 2-octaprenyl-6-methox 97.6 0.00087 1.9E-08 64.7 12.4 99 164-264 4-170 (395)
394 PRK06185 hypothetical protein; 97.6 0.0012 2.6E-08 64.1 13.3 100 163-263 6-169 (407)
395 PRK12834 putative FAD-binding 97.6 8.1E-05 1.8E-09 74.9 5.2 36 3-41 2-37 (549)
396 PTZ00367 squalene epoxidase; P 97.6 8E-05 1.7E-09 74.5 4.8 35 4-41 32-66 (567)
397 KOG0685 Flavin-containing amin 97.6 0.00011 2.4E-09 69.1 5.3 39 4-44 20-58 (498)
398 PLN02927 antheraxanthin epoxid 97.5 0.0001 2.2E-09 74.4 5.2 35 4-41 80-114 (668)
399 PF05834 Lycopene_cycl: Lycope 97.5 0.0013 2.9E-08 62.8 12.6 96 166-264 2-143 (374)
400 PRK12416 protoporphyrinogen ox 97.5 0.00011 2.3E-09 72.7 5.2 51 206-260 227-277 (463)
401 PRK02106 choline dehydrogenase 97.5 0.00011 2.3E-09 74.3 5.2 39 1-42 1-40 (560)
402 COG3349 Uncharacterized conser 97.5 0.00011 2.5E-09 70.2 5.0 36 6-44 1-36 (485)
403 PRK11445 putative oxidoreducta 97.5 0.0017 3.7E-08 61.5 13.1 96 165-264 3-158 (351)
404 PF13454 NAD_binding_9: FAD-NA 97.5 0.0015 3.3E-08 53.9 11.1 42 218-261 113-155 (156)
405 PRK06996 hypothetical protein; 97.5 0.0014 3.1E-08 63.2 12.5 97 163-261 11-172 (398)
406 TIGR01989 COQ6 Ubiquinone bios 97.5 0.0018 4E-08 63.3 12.8 102 165-266 2-186 (437)
407 PRK12771 putative glutamate sy 97.5 0.0004 8.6E-09 70.2 8.2 91 162-264 136-235 (564)
408 KOG2311 NAD/FAD-utilizing prot 97.5 0.00029 6.2E-09 66.2 6.5 35 4-41 27-61 (679)
409 PRK13984 putative oxidoreducta 97.4 0.0004 8.7E-09 70.9 8.2 90 162-262 282-379 (604)
410 KOG0399 Glutamate synthase [Am 97.4 0.00033 7.2E-09 72.0 7.1 90 162-262 1784-1881(2142)
411 PRK08243 4-hydroxybenzoate 3-m 97.4 0.0022 4.9E-08 61.8 12.7 100 164-265 3-165 (392)
412 PF00732 GMC_oxred_N: GMC oxid 97.4 0.00013 2.9E-09 67.4 3.8 66 207-272 195-268 (296)
413 TIGR00137 gid_trmFO tRNA:m(5)U 97.4 0.00049 1.1E-08 65.8 7.5 34 165-198 2-35 (433)
414 TIGR02023 BchP-ChlP geranylger 97.4 0.0024 5.1E-08 61.5 12.4 97 165-264 2-156 (388)
415 PRK06567 putative bifunctional 97.4 0.00041 8.9E-09 72.1 7.3 34 162-195 382-415 (1028)
416 PRK12837 3-ketosteroid-delta-1 97.4 0.00021 4.6E-09 71.2 5.2 34 5-42 7-40 (513)
417 PRK07538 hypothetical protein; 97.4 0.0027 5.8E-08 61.7 12.7 98 165-264 2-166 (413)
418 PLN02676 polyamine oxidase 97.4 0.00028 6.1E-09 69.7 5.7 39 220-260 245-283 (487)
419 KOG2495 NADH-dehydrogenase (ub 97.3 0.0012 2.5E-08 61.5 8.7 102 162-266 54-173 (491)
420 PRK12835 3-ketosteroid-delta-1 97.3 0.00029 6.4E-09 71.2 5.4 66 204-269 212-282 (584)
421 PF06100 Strep_67kDa_ant: Stre 97.3 0.0023 5E-08 61.3 10.9 59 204-262 206-273 (500)
422 COG3380 Predicted NAD/FAD-depe 97.3 0.0019 4E-08 56.6 9.0 96 165-262 3-159 (331)
423 COG3634 AhpF Alkyl hydroperoxi 97.3 0.0023 4.9E-08 57.9 9.7 101 162-262 210-324 (520)
424 PRK06126 hypothetical protein; 97.3 0.0041 8.9E-08 62.8 12.9 99 163-263 7-188 (545)
425 TIGR00137 gid_trmFO tRNA:m(5)U 97.2 0.00039 8.4E-09 66.5 5.0 34 6-42 1-34 (433)
426 KOG2614 Kynurenine 3-monooxyge 97.2 0.00041 8.9E-09 64.4 4.8 35 5-42 2-36 (420)
427 TIGR02028 ChlP geranylgeranyl 97.2 0.0065 1.4E-07 58.6 13.4 100 165-265 2-162 (398)
428 TIGR02360 pbenz_hydroxyl 4-hyd 97.2 0.0042 9.1E-08 59.8 12.0 101 164-265 3-165 (390)
429 KOG1335 Dihydrolipoamide dehyd 97.2 0.00051 1.1E-08 62.8 5.1 99 5-129 211-317 (506)
430 PLN02529 lysine-specific histo 97.2 0.00049 1.1E-08 70.5 5.6 38 4-44 159-196 (738)
431 COG2081 Predicted flavoprotein 97.2 0.0056 1.2E-07 57.0 11.8 119 4-125 2-166 (408)
432 PRK12844 3-ketosteroid-delta-1 97.2 0.0005 1.1E-08 69.2 5.4 65 204-269 207-276 (557)
433 PLN02927 antheraxanthin epoxid 97.2 0.0074 1.6E-07 61.3 13.6 35 162-196 80-114 (668)
434 KOG1276 Protoporphyrinogen oxi 97.2 0.00071 1.5E-08 62.9 5.8 39 5-44 11-49 (491)
435 COG0445 GidA Flavin-dependent 97.2 0.0012 2.6E-08 63.5 7.4 97 164-261 5-156 (621)
436 COG1251 NirB NAD(P)H-nitrite r 97.2 0.0027 5.9E-08 63.3 9.9 102 163-268 3-118 (793)
437 KOG1298 Squalene monooxygenase 97.1 0.00053 1.2E-08 62.8 4.5 35 4-41 44-78 (509)
438 PRK12845 3-ketosteroid-delta-1 97.1 0.00081 1.7E-08 67.6 6.2 65 204-269 216-285 (564)
439 PLN02328 lysine-specific histo 97.1 0.00065 1.4E-08 70.0 5.5 37 5-44 238-274 (808)
440 COG0562 Glf UDP-galactopyranos 97.1 0.00079 1.7E-08 60.3 5.2 37 5-44 1-37 (374)
441 PRK08255 salicylyl-CoA 5-hydro 97.1 0.00057 1.2E-08 71.5 4.8 33 7-42 2-36 (765)
442 COG0493 GltD NADPH-dependent g 97.1 0.0018 3.8E-08 62.9 7.6 89 162-261 122-218 (457)
443 PRK08401 L-aspartate oxidase; 97.0 0.011 2.4E-07 58.3 12.9 95 164-261 2-173 (466)
444 TIGR02462 pyranose_ox pyranose 97.0 0.00091 2E-08 66.3 4.7 56 213-268 222-284 (544)
445 PRK07804 L-aspartate oxidase; 97.0 0.012 2.7E-07 59.1 12.9 98 164-261 17-208 (541)
446 PLN00093 geranylgeranyl diphos 96.9 0.016 3.5E-07 56.7 13.2 101 163-264 39-200 (450)
447 COG1148 HdrA Heterodisulfide r 96.9 0.0023 5E-08 60.5 6.9 72 162-233 123-206 (622)
448 PLN02985 squalene monooxygenas 96.9 0.014 3.1E-07 58.1 12.8 101 163-265 43-210 (514)
449 TIGR01812 sdhA_frdA_Gneg succi 96.9 0.017 3.6E-07 58.6 13.1 50 211-261 135-189 (566)
450 PRK08275 putative oxidoreducta 96.9 0.019 4.2E-07 57.9 13.5 55 208-262 140-199 (554)
451 PF14721 AIF_C: Apoptosis-indu 96.7 0.013 2.8E-07 44.7 8.2 34 325-363 1-35 (133)
452 COG2303 BetA Choline dehydroge 96.7 0.0015 3.3E-08 65.4 4.3 59 209-268 207-271 (542)
453 PRK12266 glpD glycerol-3-phosp 96.7 0.028 6.1E-07 56.1 13.0 33 164-196 7-39 (508)
454 PRK06854 adenylylsulfate reduc 96.7 0.032 6.9E-07 56.9 13.3 96 164-260 12-192 (608)
455 TIGR01811 sdhA_Bsu succinate d 96.7 0.027 5.8E-07 57.4 12.7 43 219-261 147-194 (603)
456 PLN03000 amine oxidase 96.6 0.0028 6.1E-08 65.6 5.5 37 5-44 184-220 (881)
457 PRK14106 murD UDP-N-acetylmura 96.6 0.0086 1.9E-07 58.9 8.6 38 1-41 1-38 (450)
458 PRK06452 sdhA succinate dehydr 96.6 0.03 6.4E-07 56.7 12.3 50 210-260 141-195 (566)
459 PRK13369 glycerol-3-phosphate 96.5 0.032 7E-07 55.6 12.3 33 164-196 7-39 (502)
460 PRK06175 L-aspartate oxidase; 96.5 0.035 7.6E-07 54.2 12.3 53 208-261 131-187 (433)
461 PF13450 NAD_binding_8: NAD(P) 96.5 0.005 1.1E-07 42.7 4.5 33 168-200 1-33 (68)
462 PRK07573 sdhA succinate dehydr 96.5 0.038 8.3E-07 56.6 12.8 47 214-261 179-230 (640)
463 PRK08294 phenol 2-monooxygenas 96.5 0.037 8E-07 56.7 12.6 100 163-262 32-209 (634)
464 PRK14106 murD UDP-N-acetylmura 96.5 0.013 2.8E-07 57.7 9.1 82 162-268 4-85 (450)
465 KOG2853 Possible oxidoreductas 96.5 0.0031 6.7E-08 57.0 3.9 40 5-44 86-126 (509)
466 TIGR00551 nadB L-aspartate oxi 96.4 0.035 7.6E-07 55.2 11.7 54 208-262 131-188 (488)
467 PRK12835 3-ketosteroid-delta-1 96.4 0.065 1.4E-06 54.4 13.7 34 164-197 12-45 (584)
468 PLN02976 amine oxidase 96.4 0.0045 9.8E-08 66.9 5.4 36 5-43 693-728 (1713)
469 TIGR01810 betA choline dehydro 96.4 0.0031 6.7E-08 63.4 3.9 59 209-268 198-260 (532)
470 PLN02785 Protein HOTHEAD 96.4 0.0042 9.2E-08 62.7 4.9 34 5-42 55-88 (587)
471 PRK06263 sdhA succinate dehydr 96.3 0.052 1.1E-06 54.8 12.5 52 210-261 139-195 (543)
472 KOG2311 NAD/FAD-utilizing prot 96.3 0.018 3.9E-07 54.6 8.3 32 164-195 29-60 (679)
473 PRK05945 sdhA succinate dehydr 96.3 0.06 1.3E-06 54.7 12.9 52 209-261 139-195 (575)
474 KOG2960 Protein involved in th 96.3 0.0013 2.8E-08 55.1 0.5 35 6-41 77-111 (328)
475 COG4529 Uncharacterized protei 96.2 0.055 1.2E-06 51.8 10.8 102 164-266 2-167 (474)
476 KOG2614 Kynurenine 3-monooxyge 96.1 0.027 5.9E-07 52.6 8.2 34 164-197 3-36 (420)
477 PRK06069 sdhA succinate dehydr 96.1 0.086 1.9E-06 53.6 12.7 31 165-195 7-40 (577)
478 PRK08205 sdhA succinate dehydr 96.1 0.12 2.6E-06 52.6 13.5 55 208-262 143-205 (583)
479 PRK07803 sdhA succinate dehydr 96.1 0.09 2E-06 53.9 12.6 32 164-195 9-40 (626)
480 PRK02705 murD UDP-N-acetylmura 96.0 0.031 6.6E-07 55.2 9.0 130 7-191 2-140 (459)
481 PRK08255 salicylyl-CoA 5-hydro 95.9 0.025 5.5E-07 59.3 8.1 33 165-197 2-36 (765)
482 COG0654 UbiH 2-polyprenyl-6-me 95.8 0.015 3.3E-07 55.9 5.7 58 163-220 2-60 (387)
483 KOG1346 Programmed cell death 95.8 0.013 2.8E-07 54.5 4.7 102 5-129 347-452 (659)
484 PRK08071 L-aspartate oxidase; 95.8 0.08 1.7E-06 52.9 10.7 31 164-195 4-34 (510)
485 PRK08626 fumarate reductase fl 95.7 0.14 2.9E-06 52.8 12.3 47 213-260 166-217 (657)
486 PRK12834 putative FAD-binding 95.7 0.23 4.9E-06 50.2 13.5 33 164-196 5-37 (549)
487 PF13434 K_oxygenase: L-lysine 95.7 0.034 7.3E-07 52.3 7.0 102 165-266 4-162 (341)
488 PRK08163 salicylate hydroxylas 95.6 0.019 4.1E-07 55.4 5.6 37 163-199 4-40 (396)
489 PRK07395 L-aspartate oxidase; 95.6 0.084 1.8E-06 53.2 10.2 44 218-261 148-195 (553)
490 TIGR03862 flavo_PP4765 unchara 95.6 0.12 2.7E-06 48.9 10.6 83 176-263 57-141 (376)
491 TIGR02352 thiamin_ThiO glycine 95.5 0.071 1.5E-06 50.1 9.0 56 204-261 136-191 (337)
492 PRK05335 tRNA (uracil-5-)-meth 95.5 0.021 4.6E-07 54.5 5.0 35 164-198 3-37 (436)
493 PRK02472 murD UDP-N-acetylmura 95.4 0.099 2.2E-06 51.4 9.7 38 1-41 1-38 (447)
494 PF02558 ApbA: Ketopantoate re 95.4 0.092 2E-06 42.9 8.1 83 166-269 1-85 (151)
495 PLN02815 L-aspartate oxidase 95.4 0.16 3.4E-06 51.7 11.2 31 164-195 30-60 (594)
496 PRK09231 fumarate reductase fl 95.4 0.23 5E-06 50.5 12.4 31 165-195 6-38 (582)
497 TIGR01176 fum_red_Fp fumarate 95.4 0.26 5.6E-06 50.1 12.7 43 218-261 146-193 (580)
498 KOG2755 Oxidoreductase [Genera 95.4 0.016 3.5E-07 50.6 3.4 91 166-265 2-106 (334)
499 PRK04308 murD UDP-N-acetylmura 95.4 0.15 3.2E-06 50.1 10.8 38 1-41 1-38 (445)
500 KOG0029 Amine oxidase [Seconda 95.3 0.025 5.3E-07 55.8 5.1 40 162-201 14-53 (501)
No 1
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=4.4e-55 Score=419.25 Aligned_cols=392 Identities=27% Similarity=0.407 Sum_probs=328.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
+.++|||||||+||++||..|++.+. +.+|+||++++..+|.+|.+++.++........ .....+++.
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~-~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~-----------~~~~~~~~~ 69 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGF-TGELHLFSDERHLPYERPPLSKSMLLEDSPQLQ-----------QVLPANWWQ 69 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCC-CCCEEEeCCCCCCCCCCCCCCHHHHCCCCcccc-----------ccCCHHHHH
Confidence 45789999999999999999999875 567999999999999998888766543221111 123356777
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCC
Q 013914 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN 163 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~ 163 (434)
+.+++++.++.|..++++.+.+.+.++.++.||+||||||++|+.++ +++...+++++++++.++.++++.+. .+
T Consensus 70 ~~~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p---~~~~~~~~v~~~~~~~da~~l~~~~~--~~ 144 (396)
T PRK09754 70 ENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLP---LLDALGERCFTLRHAGDAARLREVLQ--PE 144 (396)
T ss_pred HCCCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCCCCC---CCCcCCCCEEecCCHHHHHHHHHHhh--cC
Confidence 88999999989999999999999988889999999999999998766 34445577999999999999888775 47
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEE
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK 243 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~ 243 (434)
++++|||+|++|+|+|..|.+.|.+|+++++.++++++.+++.+.+.+.+.+++.||++++++.++++.. ++. ..+.
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~-~~v~ 221 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD--GEK-VELT 221 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc--CCE-EEEE
Confidence 8999999999999999999999999999999999988767889999999999999999999999999975 232 4577
Q ss_pred eCCCcEEECCEEEEcccCccChhhhhc-cccccCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHH
Q 013914 244 LKDGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSA 322 (434)
Q Consensus 244 ~~~g~~~~~D~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g 322 (434)
+.+|+++++|.|++++|.+||+.++.. ++.. +++|.||+++||++|||||+|||+..+.. .+...+.++|..|..||
T Consensus 222 l~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~-~~gi~vd~~~~ts~~~IyA~GD~a~~~~~-~g~~~~~~~~~~A~~qg 299 (396)
T PRK09754 222 LQSGETLQADVVIYGIGISANDQLAREANLDT-ANGIVIDEACRTCDPAIFAGGDVAITRLD-NGALHRCESWENANNQA 299 (396)
T ss_pred ECCCCEEECCEEEECCCCChhhHHHHhcCCCc-CCCEEECCCCccCCCCEEEccceEeeeCC-CCCEEEECcHHHHHHHH
Confidence 889999999999999999999987743 4444 46799999999999999999999987766 66666778999999999
Q ss_pred HHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCCCCE-EEEcCCCcccCCCcEEEEEEeCCEEEEEEEecCCH
Q 013914 323 EQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT-VLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTP 401 (434)
Q Consensus 323 ~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~~~ 401 (434)
+.||+||++.. ..|..+|++|+.++++.++.+|...++. +..++.. ...|..+++++|+|+|+.++|+ .
T Consensus 300 ~~aa~ni~g~~-----~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~g~~~~~~-~ 369 (396)
T PRK09754 300 QIAAAAMLGLP-----LPLLPPPWFWSDQYSDNLQFIGDMRGDDWLCRGNPE----TQKAIWFNLQNGVLIGAVTLNQ-G 369 (396)
T ss_pred HHHHHHhcCCC-----CCCCCCCceEEEeCCccEEEeeCCCCCEEEEecCCC----CceEEEEEeeCCEEEEEEEECC-H
Confidence 99999999753 5678899999999999999999765543 3344322 3456777778999999999985 6
Q ss_pred HHHHHHHHHHHcCCCCCChhhhhccCC
Q 013914 402 EENKAIAKVARVQPSVESLDVLKNEGL 428 (434)
Q Consensus 402 ~~~~~~~~~i~~~~~~~~~~~l~~~~~ 428 (434)
.+...+..+|+.+.++ +.+.|.++..
T Consensus 370 ~~~~~~~~~~~~~~~~-~~~~~~~~~~ 395 (396)
T PRK09754 370 REIRPIRKWIQSGKTF-DAKLLIDENI 395 (396)
T ss_pred HHHHHHHHHHHCCCCC-CHHHhcCccc
Confidence 7888899999999988 7778887754
No 2
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=7.3e-55 Score=412.93 Aligned_cols=397 Identities=23% Similarity=0.285 Sum_probs=303.2
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC-CC---CCCCCccCccccCCCCCC----CCC-CcccccCC
Q 013914 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA-VA---PYERPALSKAYLFPEGTA----RLP-GFHVCVGS 72 (434)
Q Consensus 2 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~-~~---~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~ 72 (434)
|+++||+||||+||||..||.++++.|.+ |.++|+.. .. ....|.++|.++...... ... .+......
T Consensus 1 ~~~~yDvvVIG~GpaG~~aA~raa~~G~k---valvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~ 77 (454)
T COG1249 1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLK---VALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEV 77 (454)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCC---EEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCC
Confidence 34579999999999999999999999987 99999994 32 123466677776554221 010 11111110
Q ss_pred -----------------CCCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccC--CcEEEcceEEEecCCCcccccCCC
Q 013914 73 -----------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT--GLIFKYQILVIATGSTVLRLTDFG 133 (434)
Q Consensus 73 -----------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~--~~~~~~d~lvlAtG~~~~~~~~~~ 133 (434)
........+++..+++++.+...+. +.++|.+.+ .++++++++|||||++|+.|+.
T Consensus 78 ~~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~---~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~-- 152 (454)
T COG1249 78 PKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFV---DPHTVEVTGEDKETITADNIIIATGSRPRIPPG-- 152 (454)
T ss_pred CCcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEEC---CCCEEEEcCCCceEEEeCEEEEcCCCCCcCCCC--
Confidence 0011223334556999999854332 467777665 4789999999999999999985
Q ss_pred CCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHH
Q 013914 134 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG 213 (434)
Q Consensus 134 ~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~ 213 (434)
++.+...+++..+...... .|++++|||+|++|+|+|..++++|.+||++++.+++++. +|+++++.+.+
T Consensus 153 -~~~~~~~~~~s~~~l~~~~--------lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~-~D~ei~~~~~~ 222 (454)
T COG1249 153 -PGIDGARILDSSDALFLLE--------LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG-EDPEISKELTK 222 (454)
T ss_pred -CCCCCCeEEechhhccccc--------CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc-CCHHHHHHHHH
Confidence 4444444555444222222 4899999999999999999999999999999999999997 89999999999
Q ss_pred HHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc--EEECCEEEEcccCccChhhh---hccccc-cCCcEEeCCCCCC
Q 013914 214 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR--TLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKT 287 (434)
Q Consensus 214 ~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~--~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t 287 (434)
.|++.|+++++++.+++++..+++ ..+.+++|+ ++++|.+++|+|++||++-+ +.++.. ++|+|.||++++|
T Consensus 223 ~l~~~gv~i~~~~~v~~~~~~~~~--v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~T 300 (454)
T COG1249 223 QLEKGGVKILLNTKVTAVEKKDDG--VLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTT 300 (454)
T ss_pred HHHhCCeEEEccceEEEEEecCCe--EEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCcccc
Confidence 999999999999999999874444 577887776 78999999999999999943 557888 5689999988888
Q ss_pred CCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC----
Q 013914 288 SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV---- 363 (434)
Q Consensus 288 ~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~---- 363 (434)
++|||||+|||++.+. +...|..||++|+.|+++. ......|..+|+.+++.|+++++ |+++
T Consensus 301 nvp~IyA~GDV~~~~~----------Lah~A~~eg~iaa~~i~g~--~~~~~d~~~iP~~ift~Peia~V--Glte~ea~ 366 (454)
T COG1249 301 NVPGIYAIGDVIGGPM----------LAHVAMAEGRIAAENIAGG--KRTPIDYRLIPSVVFTDPEIASV--GLTEEEAK 366 (454)
T ss_pred CCCCEEEeeccCCCcc----------cHhHHHHHHHHHHHHHhCC--CCCcCcccCCCEEEECCCcceee--eCCHHHHH
Confidence 9999999999988764 4566889999999999982 22346788999999999998877 6654
Q ss_pred --CCEEEEcCCCcc--------cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCc
Q 013914 364 --GDTVLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSF 430 (434)
Q Consensus 364 --~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~ 430 (434)
+..+..+..+.. .++.+|+|+++ ++++|||+|++|+++.|+ +.++.||.+++|.+|+...-.+.+++
T Consensus 367 ~~g~~~~~~~~~f~~~~ra~~~~~~~G~~Klv~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~i~~HPT~ 446 (454)
T COG1249 367 EAGIDYKVGKFPFAANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPTL 446 (454)
T ss_pred hcCCceEEEEeecccchhHHhccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCCCCCCCh
Confidence 211222222211 34678999887 579999999999999996 99999999999888777666666666
Q ss_pred cc
Q 013914 431 AS 432 (434)
Q Consensus 431 ~~ 432 (434)
.+
T Consensus 447 sE 448 (454)
T COG1249 447 SE 448 (454)
T ss_pred HH
Confidence 54
No 3
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=6.3e-52 Score=401.70 Aligned_cols=400 Identities=18% Similarity=0.229 Sum_probs=301.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhcC
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 86 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (434)
+|||||||+||++||..|++++ ++.+|+|||+++...|.++.+....- . ..+..... .......+.++.+
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~-~~~~I~li~~~~~~~~~~~~lp~~~~-~----~~~~~~~~----~~~~~~~~~~~~~ 72 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLD-KESDIIIFEKDRDMSFANCALPYYIG-E----VVEDRKYA----LAYTPEKFYDRKQ 72 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhC-CCCCEEEEECCCCcccccCCcchhhc-C----ccCCHHHc----ccCCHHHHHHhCC
Confidence 7999999999999999999875 35779999999887777654322110 0 00000000 0011234446679
Q ss_pred cEEEcCCeeEEEECCCCEEEccCC---c--EEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhC
Q 013914 87 IELILSTEIVRADIASKTLLSATG---L--IFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAK 161 (434)
Q Consensus 87 v~~~~~~~v~~i~~~~~~v~~~~~---~--~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~ 161 (434)
++++.+++|+.||++.++|.+.++ . ++.||+||||||++|+.|+ ++ ..++++.+++.+...+.+.+...
T Consensus 73 i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~---~~---~~~~~~~~~~~~~~~l~~~l~~~ 146 (438)
T PRK13512 73 ITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLG---FE---SDITFTLRNLEDTDAIDQFIKAN 146 (438)
T ss_pred CEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCC---CC---CCCeEEecCHHHHHHHHHHHhhc
Confidence 999988899999999999887643 2 4689999999999997665 33 36788888999998888887665
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 241 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~ 241 (434)
.+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.||++++++++++++. ..
T Consensus 147 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~-~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~------~~ 219 (438)
T PRK13512 147 QVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELDKREIPYRLNEEIDAING------NE 219 (438)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh-cCHHHHHHHHHHHHhcCCEEEECCeEEEEeC------CE
Confidence 6799999999999999999999999999999999988875 7999999999999999999999999999964 24
Q ss_pred EEeCCCcEEECCEEEEcccCccChhhhhc-cccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHH
Q 013914 242 VKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHAR 319 (434)
Q Consensus 242 v~~~~g~~~~~D~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~ 319 (434)
+++.+|+++++|.+++|+|++||+++++. ++.. ++|+|.||+++||++|||||+|||+.......+.+...+.+..|.
T Consensus 220 v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~ 299 (438)
T PRK13512 220 VTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAH 299 (438)
T ss_pred EEECCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCcccCCCCEEEeeeeEEeeeccCCCceecccchHHH
Confidence 66778889999999999999999988754 5665 568899999999999999999999975433333333335667788
Q ss_pred HHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCCCCEE-------EEcC--CCc--ccCCCcEEEEEE--
Q 013914 320 KSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTV-------LFGD--NDL--ASATHKFGTYWI-- 386 (434)
Q Consensus 320 ~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~-------~~~~--~~~--~~~~~~~~~~~~-- 386 (434)
++|+.+++||++... .....+..+|. ..+++..+..+|.++.+.. .+.. ... ...+.+|+|+++
T Consensus 300 ~~a~~~a~ni~g~~~-~~~~~~~~~~~--~~~~~~~ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~ 376 (438)
T PRK13512 300 RAASIVAEQIAGNDT-IEFKGFLGNNI--VKFFDYTFASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRVYYDT 376 (438)
T ss_pred HHHHHHHHHhcCCCc-cccCCcccceE--EEEcCceEEeecCCHHHHccCCcEEEEEecCCcCCCcCCCceEEEEEEEEC
Confidence 999999999986421 11112333444 4445556666687653211 1100 110 124567888877
Q ss_pred eCCEEEEEEEecCC-HHH-HHHHHHHHHcCCCCCChhhh-hccCCCccc
Q 013914 387 KDGKVVGVFLESGT-PEE-NKAIAKVARVQPSVESLDVL-KNEGLSFAS 432 (434)
Q Consensus 387 ~~~~ilG~~~~g~~-~~~-~~~~~~~i~~~~~~~~~~~l-~~~~~~~~~ 432 (434)
++++|||+|++|++ +.+ ++.++.+|++++|++|+..+ ..+.++|.+
T Consensus 377 ~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~ 425 (438)
T PRK13512 377 SNRKILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAYAPPYSH 425 (438)
T ss_pred CCCeEEEEEEEccccHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCCc
Confidence 57999999999996 676 59999999999999988775 555666653
No 4
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=100.00 E-value=1.4e-52 Score=382.55 Aligned_cols=401 Identities=53% Similarity=0.880 Sum_probs=359.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
...++|||+|++|..|+.++++.+. ..+++++.++..+||.++.+++.+... +........+|++.
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~-~~ri~l~~~~~~~pydr~~Ls~~~~~~-------------~~~~a~r~~e~Yke 139 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGF-TERIALVKREYLLPYDRARLSKFLLTV-------------GEGLAKRTPEFYKE 139 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCC-CcceEEEeccccCcccchhcccceeec-------------cccccccChhhHhh
Confidence 4689999999999999999999986 567899998988899887776654432 33334577889999
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCC
Q 013914 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNG 164 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~ 164 (434)
.++++++++.|+.+|...+++.+.+|++++|++|+||||+.++.++ ++|.+.++++++++.+++..+...+. ..+
T Consensus 140 ~gIe~~~~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~---~pG~~~~nv~~ireieda~~l~~~~~--~~~ 214 (478)
T KOG1336|consen 140 KGIELILGTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAKTLD---IPGVELKNVFYLREIEDANRLVAAIQ--LGG 214 (478)
T ss_pred cCceEEEcceeEEeeccccEEEeCCCceeecceEEEeecCccccCC---CCCccccceeeeccHHHHHHHHHHhc--cCc
Confidence 9999999999999999999999999999999999999999999888 57878899999999999998887776 377
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL 244 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~ 244 (434)
+++++|+|++|+|+|..+...+.+||++++.+.++++.+.+.+.+.+...++++||++++++.+.+++..++|++..|.+
T Consensus 215 ~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l 294 (478)
T KOG1336|consen 215 KVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKL 294 (478)
T ss_pred eEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred CCCcEEECCEEEEcccCccChhhhhccccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHH
Q 013914 245 KDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAE 323 (434)
Q Consensus 245 ~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~ 323 (434)
.||++++||+|++.+|.+||+.++..+..+ ..|+|.||+.+||++|||||+|||+..+...++..++.+|++.|+.+|+
T Consensus 295 ~dg~~l~adlvv~GiG~~p~t~~~~~g~~~~~~G~i~V~~~f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~ 374 (478)
T KOG1336|consen 295 KDGKTLEADLVVVGIGIKPNTSFLEKGILLDSKGGIKVDEFFQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGR 374 (478)
T ss_pred ccCCEeccCeEEEeeccccccccccccceecccCCEeehhceeeccCCcccccceeecccccccccccchHHHHHHHHHH
Confidence 999999999999999999999999865444 8899999999999999999999999999988887777899999999999
Q ss_pred HHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCCCCEEEEcCCCcccCCCcEEEEEEeCCEEEEEEEecCCHHH
Q 013914 324 QAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEE 403 (434)
Q Consensus 324 ~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~~~~~ 403 (434)
.+...+....+ ..++++|+||+.+|+..|...|...++.+.+|+.. ...|+.+|++ +..+++.+-+....+
T Consensus 375 ~av~ai~~~~~----~~~~~lPyf~t~~f~~~~~~~G~g~~~~v~~G~~e----~~~f~ay~~k-~~~v~a~~~~g~~~~ 445 (478)
T KOG1336|consen 375 QAVKAIKMAPQ----DAYDYLPYFYTRFFSLSWRFAGDGVGDVVLFGDLE----PGSFGAYWIK-GDKVGAVAEGGRDEE 445 (478)
T ss_pred hhhhhhhccCc----ccccccchHHHHHhhhhccccCcCccceeeecccc----cccceeeEee-ccEEEEEeccCCChH
Confidence 88877766543 33889999999999999999998888889999877 3459999999 999999999877777
Q ss_pred HHHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013914 404 NKAIAKVARVQPSVESLDVLKNEGLSFASK 433 (434)
Q Consensus 404 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~ 433 (434)
.+.++.++++|+.+..++.+...+.+|+..
T Consensus 446 ~~~~a~l~~~~~~v~~~~~~~~~~~~~~~~ 475 (478)
T KOG1336|consen 446 VSQFAKLARQGPEVTSLKLLSKSGDSFWLT 475 (478)
T ss_pred HHHHHHHHhcCCcchhhhhccccchhhHHh
Confidence 899999999999999888898888887754
No 5
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=7.6e-52 Score=404.18 Aligned_cols=405 Identities=21% Similarity=0.288 Sum_probs=310.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhcC
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 86 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (434)
+|||||||+||+++|.+|++.+. ..+|+|||+++...|..+.+.. +...... .+. .......+.+++.+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~-~~~Vtli~~~~~~~~~~~~~~~-~~~~~~~--~~~-------~~~~~~~~~~~~~g 70 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNK-ELEITVYEKTDIVSFGACGLPY-FVGGFFD--DPN-------TMIARTPEEFIKSG 70 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCC-CCcEEEEECCCcceeecCCCce-EeccccC--CHH-------HhhcCCHHHHHHCC
Confidence 79999999999999999999763 4569999999876665433221 1110000 000 00123456677889
Q ss_pred cEEEcCCeeEEEECCCCEEEccC---CcEEE--cceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhC
Q 013914 87 IELILSTEIVRADIASKTLLSAT---GLIFK--YQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAK 161 (434)
Q Consensus 87 v~~~~~~~v~~i~~~~~~v~~~~---~~~~~--~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~ 161 (434)
++++.++.|+.++++.+.+.+.+ +.++. ||+||+|||++|+.|+ ++|.+.+++++++++.+..++++.+...
T Consensus 71 v~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~---i~g~~~~~v~~~~~~~~~~~l~~~l~~~ 147 (444)
T PRK09564 71 IDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPP---IKNINLENVYTLKSMEDGLALKELLKDE 147 (444)
T ss_pred CeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCC---CCCcCCCCEEEECCHHHHHHHHHHHhhc
Confidence 99998889999999999887754 55666 9999999999998877 5777667899999999888888888765
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 241 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~ 241 (434)
.+++++|+|+|++|+|+|..+.+.|.+|+++++.+++++..+++++.+.+.+.+++.||++++++++.++.. ++.+..
T Consensus 148 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~ 225 (444)
T PRK09564 148 EIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEG 225 (444)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEE
Confidence 689999999999999999999999999999999998887557999999999999999999999999999965 444445
Q ss_pred EEeCCCcEEECCEEEEcccCccChhhhhc-cccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHH
Q 013914 242 VKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHAR 319 (434)
Q Consensus 242 v~~~~g~~~~~D~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~ 319 (434)
+.++++ ++++|.+++|+|++|++++++. ++.. ++|+|.||+++||++|||||+|||+..+....+...+.+++..|.
T Consensus 226 v~~~~~-~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~ 304 (444)
T PRK09564 226 VVTDKG-EYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTAN 304 (444)
T ss_pred EEeCCC-EEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHH
Confidence 555544 7999999999999999987754 5665 678899999999999999999999997665555555567889999
Q ss_pred HHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCCCC------E---EEEcCCCc----ccCCCcEEEEEE
Q 013914 320 KSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD------T---VLFGDNDL----ASATHKFGTYWI 386 (434)
Q Consensus 320 ~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~------~---~~~~~~~~----~~~~~~~~~~~~ 386 (434)
+||+.+|+||++.... .+ ...+.....+++..+..+|.++.+ . ..+..... .....+|+|+++
T Consensus 305 ~qg~~~a~ni~g~~~~---~~-~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~klv~ 380 (444)
T PRK09564 305 KLGRMVGENLAGRHVS---FK-GTLGSACIKVLDLEAARTGLTEEEAKKLGIDYKTVFIKDKNHTNYYPGQEDLYVKLIY 380 (444)
T ss_pred HHHHHHHHHhcCCCCC---CC-CcccceEEEECCEEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEE
Confidence 9999999999975321 11 122333344566777778876521 1 11111111 123467888877
Q ss_pred --eCCEEEEEEEecCC-HHH-HHHHHHHHHcCCCCCChhhhhccC-CCccc
Q 013914 387 --KDGKVVGVFLESGT-PEE-NKAIAKVARVQPSVESLDVLKNEG-LSFAS 432 (434)
Q Consensus 387 --~~~~ilG~~~~g~~-~~~-~~~~~~~i~~~~~~~~~~~l~~~~-~~~~~ 432 (434)
++++|||+|++|+. +.+ ++.++.+|++++|++|+..+..+. ++|++
T Consensus 381 ~~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~p~~~~ 431 (444)
T PRK09564 381 EADTKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELGMMDFCYAPPFAR 431 (444)
T ss_pred ECCCCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCC
Confidence 58999999999986 656 599999999999999776555444 55554
No 6
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=1.8e-51 Score=402.28 Aligned_cols=399 Identities=19% Similarity=0.258 Sum_probs=288.5
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCccCccccCCCCC------CCCCCcc----
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGT------ARLPGFH---- 67 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~------~~~~~~~---- 67 (434)
|||.+|||+||||||||++||.+|+++|++ |+|||+....+ ...|.++|.++..... ....++.
T Consensus 1 ~~~~~~DvvVIG~GpaG~~aA~~aa~~G~~---v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~ 77 (463)
T PRK06370 1 TPAQRYDAIVIGAGQAGPPLAARAAGLGMK---VALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGP 77 (463)
T ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCe---EEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCcc
Confidence 788899999999999999999999999987 99999975422 2223334433321100 0000110
Q ss_pred --cccCC----------CCCCCChhhHhhc-CcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCC
Q 013914 68 --VCVGS----------GGERLLPEWYKEK-GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGV 134 (434)
Q Consensus 68 --~~~~~----------~~~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~ 134 (434)
..... ........++++. |++++.++.+. .+.+++.+ ++.++.||+||||||++|+.|+ +
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~---~~~~~v~v-~~~~~~~d~lViATGs~p~~p~---i 150 (463)
T PRK06370 78 VSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARF---ESPNTVRV-GGETLRAKRIFINTGARAAIPP---I 150 (463)
T ss_pred CccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEE---ccCCEEEE-CcEEEEeCEEEEcCCCCCCCCC---C
Confidence 00000 0001223445555 89999885543 35667766 4567999999999999999887 5
Q ss_pred CCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHH
Q 013914 135 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY 214 (434)
Q Consensus 135 ~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~ 214 (434)
+|.+...+++..+..+.. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.
T Consensus 151 ~G~~~~~~~~~~~~~~~~--------~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~~~~~~~~l~~~ 221 (463)
T PRK06370 151 PGLDEVGYLTNETIFSLD--------ELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-EDEDVAAAVREI 221 (463)
T ss_pred CCCCcCceEcchHhhCcc--------ccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-cCHHHHHHHHHH
Confidence 666555565543332211 14789999999999999999999999999999999999886 789999999999
Q ss_pred HHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-CCcEEECCEEEEcccCccChh-h-h-hccccc-cCCcEEeCCCCCCCC
Q 013914 215 YANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DGRTLEADIVVVGVGGRPLIS-L-F-KGQVAE-NKGGIETDDFFKTSA 289 (434)
Q Consensus 215 l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~-~g~~~~~D~vi~a~G~~p~~~-~-~-~~~~~~-~~g~i~vd~~~~t~~ 289 (434)
+++.||++++++++.+++..+++....+... ++.++++|.|++|+|++||++ + + ..++.. ++|+|.||+++||++
T Consensus 222 l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~~ 301 (463)
T PRK06370 222 LEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTTN 301 (463)
T ss_pred HHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcCCC
Confidence 9999999999999999987333322223332 345799999999999999998 3 2 345655 578899999999999
Q ss_pred CcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC------
Q 013914 290 DDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------ 363 (434)
Q Consensus 290 ~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------ 363 (434)
|+|||+|||++.+ .....|..||+.|++||++... ....+..+|+..+..+++ ..+|.++
T Consensus 302 ~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~--~~~~~~~~p~~~~~~p~i--a~vG~te~~a~~~ 367 (463)
T PRK06370 302 PGIYAAGDCNGRG----------AFTHTAYNDARIVAANLLDGGR--RKVSDRIVPYATYTDPPL--ARVGMTEAEARKS 367 (463)
T ss_pred CCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHhCCCC--CCcccccCCeEEEcCCCc--EeeeCCHHHHHHc
Confidence 9999999998754 3566788999999999987522 124556678766655554 4557664
Q ss_pred CCEEEE-----cCCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 364 GDTVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 364 ~~~~~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
|..+.. .+..+. ...++|+|+++ ++++|||+|++|+++.++ +.++.||++++|++|+..+.-+.+++.+
T Consensus 368 g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 447 (463)
T PRK06370 368 GRRVLVGTRPMTRVGRAVEKGETQGFMKVVVDADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTLSRAIHIHPTVSE 447 (463)
T ss_pred CCCeEEEEEecCcchhHHhcCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCChHH
Confidence 221221 111111 23567898888 479999999999999885 9999999999999988777777766654
No 7
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=2.6e-51 Score=401.84 Aligned_cols=399 Identities=17% Similarity=0.184 Sum_probs=291.9
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC----CCCCccCccccCCCC-------CCCCCCcccc
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP----YERPALSKAYLFPEG-------TARLPGFHVC 69 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~----~~~~~~~~~~~~~~~-------~~~~~~~~~~ 69 (434)
|+|++|||+||||||||++||.+|+++|.+ |+|||+.+..+ +..|..++.+..... ...+..+...
T Consensus 1 ~~~~~yDvvVIGaGpaG~~aA~~la~~G~~---v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~ 77 (461)
T PRK05249 1 MHMYDYDLVVIGSGPAGEGAAMQAAKLGKR---VAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVK 77 (461)
T ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCE---EEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCc
Confidence 778889999999999999999999999987 99999964321 112223332211100 0000000000
Q ss_pred cCCC--------------CCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCCc--EEEcceEEEecCCCcccccCCC
Q 013914 70 VGSG--------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVLRLTDFG 133 (434)
Q Consensus 70 ~~~~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~lvlAtG~~~~~~~~~~ 133 (434)
.... ......+.+++.+++++.+ .+..++....++...++. ++.||++|||||++|+.|+.
T Consensus 78 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~-- 154 (461)
T PRK05249 78 LRITFADLLARADHVINKQVEVRRGQYERNRVDLIQG-RARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPD-- 154 (461)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCC--
Confidence 0000 0011233456679999987 555555544445555554 68999999999999988874
Q ss_pred CCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHH
Q 013914 134 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG 213 (434)
Q Consensus 134 ~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~ 213 (434)
++.+..++++.. +...+. . .+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+
T Consensus 155 -~~~~~~~v~~~~---~~~~~~----~-~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~ 224 (461)
T PRK05249 155 -VDFDHPRIYDSD---SILSLD----H-LPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF-LDDEISDALSY 224 (461)
T ss_pred -CCCCCCeEEcHH---Hhhchh----h-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc-CCHHHHHHHHH
Confidence 444445555433 222221 1 4799999999999999999999999999999999999986 89999999999
Q ss_pred HHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-cCCcEEeCCCCCCCC
Q 013914 214 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSA 289 (434)
Q Consensus 214 ~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~ 289 (434)
.+++.||++++++++++++..+++ ..+++.+|+++++|.+++|+|++||++++ ..++.. ++|+|.||+++||+.
T Consensus 225 ~l~~~gI~v~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~ 302 (461)
T PRK05249 225 HLRDSGVTIRHNEEVEKVEGGDDG--VIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAV 302 (461)
T ss_pred HHHHcCCEEEECCEEEEEEEeCCe--EEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCC
Confidence 999999999999999999863333 45667788899999999999999999854 345666 678899999999999
Q ss_pred CcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC------
Q 013914 290 DDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------ 363 (434)
Q Consensus 290 ~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------ 363 (434)
|+|||+|||++.+ ..+..|..+|+.||.||++... ...+..+|+..++.|+++.+ |.++
T Consensus 303 ~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~---~~~~~~~p~~i~~~p~ia~v--G~te~~a~~~ 367 (461)
T PRK05249 303 PHIYAVGDVIGFP----------SLASASMDQGRIAAQHAVGEAT---AHLIEDIPTGIYTIPEISSV--GKTEQELTAA 367 (461)
T ss_pred CCEEEeeecCCCc----------ccHhHHHHHHHHHHHHHcCCCc---ccccCCCCeEEECCCcceEe--cCCHHHHHHc
Confidence 9999999999754 4567899999999999986432 25667899998888876555 6654
Q ss_pred CCEEEE-----cCCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 364 GDTVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 364 ~~~~~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
|..+.. ....+. ....+|+|+++ ++++|||+|++|+++.|+ +.++.||++++|++|+..+.-+.+++.+
T Consensus 368 g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e 447 (461)
T PRK05249 368 KVPYEVGRARFKELARAQIAGDNVGMLKILFHRETLEILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNTTFNYPTMAE 447 (461)
T ss_pred CCCeEEEEEccccccceeecCCCCcEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHH
Confidence 221211 112211 23567888887 579999999999999885 9999999999999977776666666543
No 8
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=1.3e-50 Score=393.18 Aligned_cols=395 Identities=17% Similarity=0.225 Sum_probs=287.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCccCccccCCCCC----CCCCCcccccC--C--
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGT----ARLPGFHVCVG--S-- 72 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~-- 72 (434)
|+|||+||||||||++||..|++.|.+ |+|||++...+ ...|.+++.++..... ...+.+..... .
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~---V~liE~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 77 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAK---ALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTF 77 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCc---EEEecccccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCcc
Confidence 469999999999999999999999987 99999975422 2234445443322210 00011100000 0
Q ss_pred --------------CCCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccc-cCCCCCCC
Q 013914 73 --------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRL-TDFGVEGA 137 (434)
Q Consensus 73 --------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~-~~~~~~g~ 137 (434)
.........+++.+++++.++.+. .+.+++.+ ++..+.||++|||||++|+.| + +||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~---~~~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~---i~g~ 150 (450)
T TIGR01421 78 NWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARF---TKDGTVEV-NGRDYTAPHILIATGGKPSFPEN---IPGA 150 (450)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ccCCEEEE-CCEEEEeCEEEEecCCCCCCCCC---CCCC
Confidence 000112233456789999985443 24566665 456799999999999999877 5 5664
Q ss_pred CCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHh
Q 013914 138 DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN 217 (434)
Q Consensus 138 ~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~ 217 (434)
+. .+ +.++...+. . .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.|++
T Consensus 151 ~~--~~---~~~~~~~~~----~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~-~d~~~~~~~~~~l~~ 219 (450)
T TIGR01421 151 EL--GT---DSDGFFALE----E-LPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS-FDSMISETITEEYEK 219 (450)
T ss_pred ce--eE---cHHHhhCcc----c-cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc-cCHHHHHHHHHHHHH
Confidence 31 11 223332221 1 4789999999999999999999999999999999999876 799999999999999
Q ss_pred cCcEEEcCCeEEEEEecCCCcEEEEEeCCC-cEEECCEEEEcccCccChhhh---hccccc-cCCcEEeCCCCCCCCCcE
Q 013914 218 KGIKIIKGTVAVGFTTNADGEVKEVKLKDG-RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDV 292 (434)
Q Consensus 218 ~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g-~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~i 292 (434)
.||++++++.++++..+.++ ...+.+.+| +++++|.|++|+|++||++++ ..++.. ++|+|.||+++||++|||
T Consensus 220 ~gI~i~~~~~v~~i~~~~~~-~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~I 298 (450)
T TIGR01421 220 EGINVHKLSKPVKVEKTVEG-KLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGI 298 (450)
T ss_pred cCCEEEcCCEEEEEEEeCCc-eEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCCCCE
Confidence 99999999999999863333 235677777 579999999999999999853 345666 678899999999999999
Q ss_pred EEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCCCC-------
Q 013914 293 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD------- 365 (434)
Q Consensus 293 ya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~------- 365 (434)
||+|||++.+ ..+..|..||+.+++||++... .....+..+|++.++.++++.+ |+++.+
T Consensus 299 yAiGD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~~~p~~~f~~p~ia~v--Glte~~a~~~~g~ 365 (450)
T TIGR01421 299 YALGDVVGKV----------ELTPVAIAAGRKLSERLFNGKT-DDKLDYNNVPTVVFSHPPIGTI--GLTEKEAIEKYGK 365 (450)
T ss_pred EEEEecCCCc----------ccHHHHHHHHHHHHHHHhcCCC-CCccCcccCCeEEeCCCceEEE--eCCHHHHHhhcCC
Confidence 9999999754 3567889999999999986431 1235677889888877776665 655421
Q ss_pred -EEEEcCC--Cc------ccCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013914 366 -TVLFGDN--DL------ASATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK 433 (434)
Q Consensus 366 -~~~~~~~--~~------~~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~~ 433 (434)
.+..... .. ....++|+|+++ ++++|||+|++|+++.|+ +.++.||++++|++|+..+..+.+++.+.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~ 445 (450)
T TIGR01421 366 ENIKVYNSSFTPMYYAMTSEKQKCRMKLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSSEE 445 (450)
T ss_pred CCEEEEEEEcChhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHH
Confidence 1111111 11 024567888877 479999999999999986 99999999999999888877777776653
No 9
>PLN02507 glutathione reductase
Probab=100.00 E-value=4.2e-50 Score=392.96 Aligned_cols=394 Identities=20% Similarity=0.229 Sum_probs=289.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC---------C-C---CCCCCCccCccccCCCCC----CCCCCcc
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE---------A-V---APYERPALSKAYLFPEGT----ARLPGFH 67 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~---------~-~---~~~~~~~~~~~~~~~~~~----~~~~~~~ 67 (434)
+|||+||||||+|+.||..++++|.+ |+|||+. . . +.+..|.++|.++..... .....+.
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~---V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G 101 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAK---VGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYG 101 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcC
Confidence 48999999999999999999999988 9999962 1 1 112224445555322211 0000010
Q ss_pred cccCCC------------------CCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCCc--EEEcceEEEecCCCcc
Q 013914 68 VCVGSG------------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVL 127 (434)
Q Consensus 68 ~~~~~~------------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~lvlAtG~~~~ 127 (434)
...... ........+...+++++.+ .+..+++....|...+|+ ++.||+||||||++|.
T Consensus 102 ~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~ 180 (499)
T PLN02507 102 WEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQ 180 (499)
T ss_pred cccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCC
Confidence 000000 0001123344578999997 777777776677776765 5889999999999998
Q ss_pred cccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHH
Q 013914 128 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADI 207 (434)
Q Consensus 128 ~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~ 207 (434)
.|+ ++|.+. .. +.+++..+.. .+++++|||+|++|+|+|..+.+.|.+|+++++.+++++. +++++
T Consensus 181 ~p~---ipG~~~--~~---~~~~~~~l~~-----~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~ 246 (499)
T PLN02507 181 RPN---IPGKEL--AI---TSDEALSLEE-----LPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG-FDDEM 246 (499)
T ss_pred CCC---CCCccc--ee---chHHhhhhhh-----cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc-cCHHH
Confidence 877 465431 12 3344443321 3789999999999999999999999999999999988876 79999
Q ss_pred HHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-cCCcEEeCC
Q 013914 208 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDD 283 (434)
Q Consensus 208 ~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~ 283 (434)
.+.+.+.|++.||+++++++|++++..+++ ..+.+.+|+++++|.|++++|++||++++ ..++.. ++|+|.||+
T Consensus 247 ~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~--~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~ 324 (499)
T PLN02507 247 RAVVARNLEGRGINLHPRTNLTQLTKTEGG--IKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDE 324 (499)
T ss_pred HHHHHHHHHhCCCEEEeCCEEEEEEEeCCe--EEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCC
Confidence 999999999999999999999999863333 45677788899999999999999999864 345666 568899999
Q ss_pred CCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC
Q 013914 284 FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV 363 (434)
Q Consensus 284 ~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~ 363 (434)
++||++|||||+|||++.+ .....|..||+.+++||++... ....+..+|+.+++.|+++.+ |+++
T Consensus 325 ~~~Ts~p~IyAiGDv~~~~----------~l~~~A~~qg~~aa~ni~g~~~--~~~~~~~~p~~if~~p~ia~v--Glte 390 (499)
T PLN02507 325 YSRTNIPSIWAIGDVTNRI----------NLTPVALMEGTCFAKTVFGGQP--TKPDYENVACAVFCIPPLSVV--GLSE 390 (499)
T ss_pred CCcCCCCCEEEeeEcCCCC----------ccHHHHHHHHHHHHHHHcCCCC--CcCCCCCCCeEEECCCccEEE--eCCH
Confidence 9999999999999999754 3567888999999999987532 124566778888887776555 6653
Q ss_pred -------CCEEEEcC--CCcc------cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhc
Q 013914 364 -------GDTVLFGD--NDLA------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKN 425 (434)
Q Consensus 364 -------~~~~~~~~--~~~~------~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~ 425 (434)
+..+.... ..+. ..++.|+|+++ ++++|||+|++|+++.++ +.++.||++++|++|+..+..
T Consensus 391 ~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~ 470 (499)
T PLN02507 391 EEAVEQAKGDILVFTSSFNPMKNTISGRQEKTVMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDSTVG 470 (499)
T ss_pred HHHHhccCCCEEEEEeecCccccccccCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcCc
Confidence 11111111 1110 12457888887 579999999999999885 999999999999998877666
Q ss_pred cCCCccc
Q 013914 426 EGLSFAS 432 (434)
Q Consensus 426 ~~~~~~~ 432 (434)
+.+++.+
T Consensus 471 ~hPt~~E 477 (499)
T PLN02507 471 IHPSAAE 477 (499)
T ss_pred CCCChHH
Confidence 6666654
No 10
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=2.9e-50 Score=391.35 Aligned_cols=393 Identities=21% Similarity=0.273 Sum_probs=289.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCccCccccCCCCC----CCCCCcccccCC-----
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGT----ARLPGFHVCVGS----- 72 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----- 72 (434)
+|||+||||||||++||..++++|.+ |+|+|++...+ ...|.+++.++..... ...+.+......
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~---V~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 78 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAK---VAIAEEPRVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDW 78 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCc---EEEEecCccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCH
Confidence 59999999999999999999999987 99999964321 2234445544322111 011111110000
Q ss_pred ------------CCCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCC
Q 013914 73 ------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAK 140 (434)
Q Consensus 73 ------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~ 140 (434)
.........+++.+++++.+ ++..+++....+. .+++++.||+||||||++|+.|+ ++|.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~~~v~v~-~~g~~~~~d~lIiATGs~p~~p~---i~G~~~- 152 (446)
T TIGR01424 79 KKLLQKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGPNTVEVL-QDGTTYTAKKILIAVGGRPQKPN---LPGHEL- 152 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEe-cCCeEEEcCEEEEecCCcCCCCC---CCCccc-
Confidence 00112234456679999987 7777765433332 45678999999999999998877 465431
Q ss_pred CeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCc
Q 013914 141 NIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGI 220 (434)
Q Consensus 141 ~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV 220 (434)
.. +..++..+. . .+++++|||+|++|+|+|..+.+.|.+|+++++.+.+++. +++++.+.+.+.+++.||
T Consensus 153 -~~---~~~~~~~l~----~-~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV 222 (446)
T TIGR01424 153 -GI---TSNEAFHLP----T-LPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG-FDDDMRALLARNMEGRGI 222 (446)
T ss_pred -ee---chHHhhccc----c-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc-cCHHHHHHHHHHHHHCCC
Confidence 12 223333221 1 4789999999999999999999999999999999988886 799999999999999999
Q ss_pred EEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-cCCcEEeCCCCCCCCCcEEEec
Q 013914 221 KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVG 296 (434)
Q Consensus 221 ~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~iya~G 296 (434)
++++++++.++...+++ ..+.+.+|+++++|.+++|+|++||++.+ ..++.. ++|+|.||+++||++|||||+|
T Consensus 223 ~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~G 300 (446)
T TIGR01424 223 RIHPQTSLTSITKTDDG--LKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVG 300 (446)
T ss_pred EEEeCCEEEEEEEcCCe--EEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEEEee
Confidence 99999999999863334 45667788899999999999999999853 345655 5688999999999999999999
Q ss_pred ccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCCC-------CEEEE
Q 013914 297 DVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG-------DTVLF 369 (434)
Q Consensus 297 D~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~-------~~~~~ 369 (434)
||++.+ ..+..|.+||+.|+.||++... ....+..+|+.+++.|+++.+ |.++. ..+..
T Consensus 301 D~~~~~----------~l~~~A~~~g~~~a~~i~~~~~--~~~~~~~~p~~if~~p~ia~v--G~te~~a~~~~~~~~~~ 366 (446)
T TIGR01424 301 DVTDRI----------NLTPVAIMEATCFANTEFGNNP--TKFDHDLIATAVFSQPPLGTV--GLTEEEAREKFTGDILV 366 (446)
T ss_pred ccCCCc----------cchhHHHHHHHHHHHHHhcCCC--CccCcCCCCeEEeCCchhEEE--ECCHHHHHhhcCCCEEE
Confidence 999743 4567889999999999987431 124567889888887766655 66531 21111
Q ss_pred cC-----CCc---ccCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 370 GD-----NDL---ASATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 370 ~~-----~~~---~~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
.. ..+ ...+++|+|+++ ++++|||+|++|++++++ +.++.||++++|++|+..+..+.+++.+
T Consensus 367 ~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 440 (446)
T TIGR01424 367 YRAGFRPMKNTFSGRQEKTLMKLVVDEKDDKVLGAHMVGPDAAEIIQGIAIALKMGATKADFDSTVGIHPSSAE 440 (446)
T ss_pred EEEecCchHhHhhcCCCceEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCChHH
Confidence 11 110 123567898887 579999999999999885 9999999999999988777767776654
No 11
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=1.1e-48 Score=400.15 Aligned_cols=389 Identities=20% Similarity=0.336 Sum_probs=308.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-CCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~-~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
+++|||||+|+||+.+|..|++++. +..+|+||++++..+|.++.++..+... ....+ .....++++
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~-~~~~l-----------~~~~~~~~~ 70 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHH-TAEEL-----------SLVREGFYE 70 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCC-CHHHc-----------cCCCHHHHH
Confidence 3589999999999999999987642 3457999999999999988776543321 11111 234567888
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCC
Q 013914 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN 163 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~ 163 (434)
+.+++++.++.|+.++++.+.|.+.++.++.||+||||||+.|+.|+ ++|.+..+++.+++++++..+.+.+. .+
T Consensus 71 ~~gI~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~---ipG~~~~~v~~~rt~~d~~~l~~~~~--~~ 145 (847)
T PRK14989 71 KHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPP---IKGSETQDCFVYRTIEDLNAIEACAR--RS 145 (847)
T ss_pred hCCCEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcCCCC---CCCCCCCCeEEECCHHHHHHHHHHHh--cC
Confidence 89999999989999999999999888889999999999999999888 67877788999999999999887765 47
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEE
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK 243 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~ 243 (434)
++++|||+|++|+|+|..|.+.|.+|+++++.+++++..++++..+.+.+.+++.||++++++.++++..+.++....+.
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~ 225 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMR 225 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEE
Confidence 89999999999999999999999999999999999887789999999999999999999999999999763334556788
Q ss_pred eCCCcEEECCEEEEcccCccChhhhh-ccccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHH
Q 013914 244 LKDGRTLEADIVVVGVGGRPLISLFK-GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKS 321 (434)
Q Consensus 244 ~~~g~~~~~D~vi~a~G~~p~~~~~~-~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~ 321 (434)
+.+|+++++|+|++|+|++||+++++ .++.. ++|+|.||++|||++|+|||+|||+......+ .++..|..+
T Consensus 226 ~~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l~Ts~p~IYAiGD~a~~~~~~~------gl~~~a~~~ 299 (847)
T PRK14989 226 FADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVF------GLVAPGYKM 299 (847)
T ss_pred ECCCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECCCCcCCCCCEEEeecceeEcCccc------ccHHHHHHH
Confidence 89999999999999999999999874 46766 67899999999999999999999998765422 477889999
Q ss_pred HHHHHHHHhccCCCCcccCCCC-CCeeEEeccCceeEEeecCCCC-----EEEEcCCCcccCCCcEEEEEE--eCCEEEE
Q 013914 322 AEQAVKTIMATEGGKTVTGYDY-LPYFYSRAFDLSWQFYGDNVGD-----TVLFGDNDLASATHKFGTYWI--KDGKVVG 393 (434)
Q Consensus 322 g~~aa~~i~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~ilG 393 (434)
|++||.||++.. ..|.. ......+.+++.+..+|...+. .+.+.+. ....|.|+++ ++++|||
T Consensus 300 a~vaa~~i~g~~-----~~~~g~~~~~~lk~~G~~v~s~G~~~~~~~~~~~~~~~~~----~~~~y~Klv~~~~~~~LlG 370 (847)
T PRK14989 300 AQVAVDHLLGSE-----NAFEGADLSAKLKLLGVDVGGIGDAHGRTPGARSYVYLDE----SKEIYKRLIVSEDNKTLLG 370 (847)
T ss_pred HHHHHHHhcCCC-----cCCCCcccceEEEECCcceEecccccCCCCCceeEEEEcC----CCCEEEEEEEECCCCEEEE
Confidence 999999998753 22332 2223455677777777744332 1122111 1467888887 4679999
Q ss_pred EEEecCCHHHHHHHHHHHHcCCCCCC-hhhhhcc
Q 013914 394 VFLESGTPEENKAIAKVARVQPSVES-LDVLKNE 426 (434)
Q Consensus 394 ~~~~g~~~~~~~~~~~~i~~~~~~~~-~~~l~~~ 426 (434)
++++|+. .+...+...+..++++.+ .+.|..+
T Consensus 371 a~lvGd~-~~~~~l~~~~~~~~~l~~~~~~l~~~ 403 (847)
T PRK14989 371 AVLVGDT-SDYGNLLQLVLNAIELPENPDSLILP 403 (847)
T ss_pred EEEECCH-HHHHHHHHHHHcCCCCccchhheecC
Confidence 9999965 444445555556666643 4454443
No 12
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=3.6e-50 Score=392.04 Aligned_cols=395 Identities=21% Similarity=0.247 Sum_probs=288.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCccCccccCCCCC----CC-CCCcccccCC--
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGT----AR-LPGFHVCVGS-- 72 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~-- 72 (434)
+.+|||+||||||||++||..|+++|.+ |+|||+....+ ...|.+++.++..... .. .+.+......
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~~a~~G~~---V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~ 78 (450)
T PRK06116 2 TKDYDLIVIGGGSGGIASANRAAMYGAK---VALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENK 78 (450)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCC
Confidence 4579999999999999999999999987 99999974321 1223334433322110 00 0000000000
Q ss_pred ---------------CCCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCC
Q 013914 73 ---------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGA 137 (434)
Q Consensus 73 ---------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~ 137 (434)
.........+.+.+++++.+ .+..++ .+++.+ +++++.||+||||||++|+.|+ ++|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~v~--~~~v~~-~g~~~~~d~lViATGs~p~~p~---i~g~ 151 (450)
T PRK06116 79 FDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEG-FARFVD--AHTVEV-NGERYTADHILIATGGRPSIPD---IPGA 151 (450)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEcc--CCEEEE-CCEEEEeCEEEEecCCCCCCCC---CCCc
Confidence 00011223345679999997 555554 467777 6678999999999999998877 4654
Q ss_pred CCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHh
Q 013914 138 DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN 217 (434)
Q Consensus 138 ~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~ 217 (434)
+ .+++ ..+...+. . .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++
T Consensus 152 ~--~~~~---~~~~~~~~----~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~L~~ 220 (450)
T PRK06116 152 E--YGIT---SDGFFALE----E-LPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRG-FDPDIRETLVEEMEK 220 (450)
T ss_pred c--eeEc---hhHhhCcc----c-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccc-cCHHHHHHHHHHHHH
Confidence 3 2222 22222211 1 4789999999999999999999999999999999988875 799999999999999
Q ss_pred cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-cCCcEEeCCCCCCCCCcEE
Q 013914 218 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVY 293 (434)
Q Consensus 218 ~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~iy 293 (434)
.||+++++++|.+++.++++. ..+.+.+|+++++|.|++|+|++|+++.+ ..++.. ++|+|.||+++||++||||
T Consensus 221 ~GV~i~~~~~V~~i~~~~~g~-~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~Iy 299 (450)
T PRK06116 221 KGIRLHTNAVPKAVEKNADGS-LTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIY 299 (450)
T ss_pred CCcEEECCCEEEEEEEcCCce-EEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCCCCEE
Confidence 999999999999998744443 35777888899999999999999999843 345666 5788999999999999999
Q ss_pred EecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC-------CC-
Q 013914 294 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV-------GD- 365 (434)
Q Consensus 294 a~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~-------~~- 365 (434)
|+|||++.+ ..+..|..||+.||+||++.... ....|..+|+.+++.|+++.+ |+++ .+
T Consensus 300 A~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~-~~~~~~~~p~~if~~p~~a~v--Glte~~a~~~~~~~ 366 (450)
T PRK06116 300 AVGDVTGRV----------ELTPVAIAAGRRLSERLFNNKPD-EKLDYSNIPTVVFSHPPIGTV--GLTEEEAREQYGED 366 (450)
T ss_pred EEeecCCCc----------CcHHHHHHHHHHHHHHHhCCCCC-CcCCcCCCCeEEeCCCccEEe--eCCHHHHHHhCCCC
Confidence 999998643 46778999999999999874320 125677899888877766655 6543 11
Q ss_pred EEEEcCCCc-----c---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 366 TVLFGDNDL-----A---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 366 ~~~~~~~~~-----~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
.+.....+. . ..+++|+|+++ ++++|||+|++|++++++ +.++.||++++|++|+..+..+.+++.+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 444 (450)
T PRK06116 367 NVKVYRSSFTPMYTALTGHRQPCLMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAE 444 (450)
T ss_pred cEEEEEEecchhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHH
Confidence 122111111 0 24578899887 479999999999999885 9999999999999988777666666654
No 13
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=4.1e-50 Score=391.91 Aligned_cols=395 Identities=19% Similarity=0.216 Sum_probs=281.6
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CC-CCccCccccCCCCC----CCCCCcccccCCC
Q 013914 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YE-RPALSKAYLFPEGT----ARLPGFHVCVGSG 73 (434)
Q Consensus 2 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 73 (434)
|+.+|||+||||||||++||..|++.|.+ |+|||+.+..+ .+ .|.+++.++..... .....+.......
T Consensus 1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~---V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~ 77 (471)
T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLE---TVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEP 77 (471)
T ss_pred CCccceEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCC
Confidence 44579999999999999999999999987 99999874321 11 23344444321100 0000000000000
Q ss_pred -----------------CCCCChhhHhhcCcEEEcCCeeEEEECCCCEE--EccCC--cEEEcceEEEecCCCcccccCC
Q 013914 74 -----------------GERLLPEWYKEKGIELILSTEIVRADIASKTL--LSATG--LIFKYQILVIATGSTVLRLTDF 132 (434)
Q Consensus 74 -----------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v--~~~~~--~~~~~d~lvlAtG~~~~~~~~~ 132 (434)
........+++.|++++.+ .+..++ .+++ ...++ .++.||+||||||++|+.++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g-~a~~~~--~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~- 153 (471)
T PRK06467 78 KIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNG-LGKFTG--GNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPF- 153 (471)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEcc--CCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCC-
Confidence 0001123355679999997 444343 4444 33455 479999999999999975443
Q ss_pred CCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHH
Q 013914 133 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYE 212 (434)
Q Consensus 133 ~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~ 212 (434)
+++ +..++++ ..++..+. . .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.
T Consensus 154 -~~~-~~~~v~~---~~~~~~~~----~-~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~-~d~~~~~~~~ 222 (471)
T PRK06467 154 -IPH-DDPRIWD---STDALELK----E-VPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA-ADKDIVKVFT 222 (471)
T ss_pred -CCC-CCCcEEC---hHHhhccc----c-CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc-CCHHHHHHHH
Confidence 333 3344443 33333322 1 4789999999999999999999999999999999999987 7999999999
Q ss_pred HHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC--C--cEEECCEEEEcccCccChhhh---hccccc-cCCcEEeCCC
Q 013914 213 GYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD--G--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDF 284 (434)
Q Consensus 213 ~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~--g--~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~ 284 (434)
+.|++. |++++++.+++++..+++ ..+.+.+ + +++++|.|++|+|++||++++ ..++.. ++|+|.||++
T Consensus 223 ~~l~~~-v~i~~~~~v~~i~~~~~~--~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~ 299 (471)
T PRK06467 223 KRIKKQ-FNIMLETKVTAVEAKEDG--IYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQ 299 (471)
T ss_pred HHHhhc-eEEEcCCEEEEEEEcCCE--EEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCC
Confidence 999988 999999999999863333 3454433 2 469999999999999999854 335666 6788999999
Q ss_pred CCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC-
Q 013914 285 FKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV- 363 (434)
Q Consensus 285 ~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~- 363 (434)
+||++|+|||+|||++.+ ..+..|.++|+.|+.||++... ...+..+|+..+..++ +..+|+++
T Consensus 300 ~~t~~p~VyAiGDv~~~~----------~la~~A~~eG~~aa~~i~g~~~---~~~~~~~p~~~~~~p~--ia~vGlte~ 364 (471)
T PRK06467 300 CRTNVPHIFAIGDIVGQP----------MLAHKGVHEGHVAAEVIAGKKH---YFDPKVIPSIAYTEPE--VAWVGLTEK 364 (471)
T ss_pred cccCCCCEEEehhhcCCc----------ccHHHHHHHHHHHHHHHcCCCC---CCCCCCCCeEEECCCc--eeEEECCHH
Confidence 999999999999999754 4577899999999999987532 2556678887655444 55557764
Q ss_pred -----CCEEEE-----cCCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccC
Q 013914 364 -----GDTVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEG 427 (434)
Q Consensus 364 -----~~~~~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~ 427 (434)
|..+.. ....+. ...++|+|+++ ++++|||+|++|+++.|+ +.++.||++++|++|+..+..+.
T Consensus 365 ea~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~~~~~~h 444 (471)
T PRK06467 365 EAKEEGIEYETATFPWAASGRAIASDCADGMTKLIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAH 444 (471)
T ss_pred HHHhcCCCeEEEEEecCcchhhhhCCCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCC
Confidence 211111 111111 24567898887 479999999999999885 99999999999999888877777
Q ss_pred CCccc
Q 013914 428 LSFAS 432 (434)
Q Consensus 428 ~~~~~ 432 (434)
++|.+
T Consensus 445 Pt~~e 449 (471)
T PRK06467 445 PTLHE 449 (471)
T ss_pred CChHH
Confidence 77654
No 14
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=1.9e-49 Score=389.14 Aligned_cols=403 Identities=18% Similarity=0.207 Sum_probs=288.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCccCccccCCCCCCC----CCCcccccCC----
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEGTAR----LPGFHVCVGS---- 72 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~---- 72 (434)
.+|||+|||||+||++||..+++.|.+ |+|||++... ....|.++|.++....... ...+......
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~---ValIEk~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~ 123 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAK---VALVEKDYLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNL 123 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCe---EEEEecccccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCH
Confidence 368999999999999999999999987 9999997532 2334555666655432211 0000000000
Q ss_pred ------------CCCCCChhhHhhcCcEEEcCCeeEEEECCCCEEE----------------------------ccCCcE
Q 013914 73 ------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLL----------------------------SATGLI 112 (434)
Q Consensus 73 ------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~----------------------------~~~~~~ 112 (434)
.......+.+++.|++++.+...+. +.++|. ..++.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~---~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~ 200 (561)
T PTZ00058 124 PLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLL---SENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQV 200 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEe---cCCEEEeeccccccccccccccccceeeeccceecCCCcE
Confidence 0011223345567999999854321 223321 245668
Q ss_pred EEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEE
Q 013914 113 FKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV 192 (434)
Q Consensus 113 ~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv 192 (434)
++||++|||||++|+.|+ ++|.+ .++ +.+++..+ . .+++++|||+|++|+|+|..|.+.|.+|+++
T Consensus 201 i~ad~lVIATGS~P~~P~---IpG~~--~v~---ts~~~~~l----~--~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli 266 (561)
T PTZ00058 201 IEGKNILIAVGNKPIFPD---VKGKE--FTI---SSDDFFKI----K--EAKRIGIAGSGYIAVELINVVNRLGAESYIF 266 (561)
T ss_pred EECCEEEEecCCCCCCCC---CCCce--eEE---EHHHHhhc----c--CCCEEEEECCcHHHHHHHHHHHHcCCcEEEE
Confidence 999999999999998887 56643 233 23333222 1 3789999999999999999999999999999
Q ss_pred ccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC-CcEEECCEEEEcccCccChhhhhc-
Q 013914 193 YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD-GRTLEADIVVVGVGGRPLISLFKG- 270 (434)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~-g~~~~~D~vi~a~G~~p~~~~~~~- 270 (434)
++.+++++. +++++.+.+.+.|++.||++++++.+.+++..+++.+ .+.+.+ ++++++|.|++|+|++||++.+..
T Consensus 267 ~~~~~il~~-~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v-~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~ 344 (561)
T PTZ00058 267 ARGNRLLRK-FDETIINELENDMKKNNINIITHANVEEIEKVKEKNL-TIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLK 344 (561)
T ss_pred Eeccccccc-CCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcE-EEEECCCCEEEECCEEEECcCCCCCccccCcc
Confidence 999998875 7999999999999999999999999999986433333 334434 457999999999999999997743
Q ss_pred --cccccCCcEEeCCCCCCCCCcEEEeccccccccc-----------------------ccCcce-ecccHHHHHHHHHH
Q 013914 271 --QVAENKGGIETDDFFKTSADDVYAVGDVATFPMK-----------------------LYREMR-RVEHVDHARKSAEQ 324 (434)
Q Consensus 271 --~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~-----------------------~~~~~~-~~~~~~~A~~~g~~ 324 (434)
++..++|+|.||+++||++|||||+|||++.+.. ..+.+. ..+++..|..||+.
T Consensus 345 ~~~~~~~~G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~ 424 (561)
T PTZ00058 345 ALNIKTPKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRL 424 (561)
T ss_pred ccceecCCCeEEECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHH
Confidence 2333678999999999999999999999984321 222332 35788899999999
Q ss_pred HHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC-------C-CEEEEcCCC-----c-------ccCCCcEEEE
Q 013914 325 AVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV-------G-DTVLFGDND-----L-------ASATHKFGTY 384 (434)
Q Consensus 325 aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~-------~-~~~~~~~~~-----~-------~~~~~~~~~~ 384 (434)
++.||++.... ...+..+|+.+++.++++.+ |+++ + +.+.....+ . ......++|+
T Consensus 425 aa~ni~g~~~~--~~~~~~ip~~vft~peiA~v--Glte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kl 500 (561)
T PTZ00058 425 LADRLFGPFSR--TTNYKLIPSVIFSHPPIGTI--GLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKL 500 (561)
T ss_pred HHHHHhCCCCc--ccCCCCCCeEEeCCchheee--eCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEEEE
Confidence 99999875321 24567789887776666655 6654 2 112111111 0 1124578888
Q ss_pred EE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 385 WI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 385 ~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
++ ++++|||+|++|+++.++ +.++.||++++|++|+..+..+.+++++
T Consensus 501 i~~~~t~~ILG~~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPt~~e 551 (561)
T PTZ00058 501 VCVGKEELIKGLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAE 551 (561)
T ss_pred EEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCChHH
Confidence 77 579999999999999885 9999999999999987777666666654
No 15
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=4e-49 Score=385.64 Aligned_cols=397 Identities=19% Similarity=0.228 Sum_probs=286.6
Q ss_pred CC-CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCccCccccCCCC--------C--CCC---
Q 013914 1 MA-EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEG--------T--ARL--- 63 (434)
Q Consensus 1 M~-~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~--------~--~~~--- 63 (434)
|| .+.|||+|||||+||++||..|++.|.+ |+|||++...+ ...|.+++.++.... . ..+
T Consensus 1 ~~~~~~~dviVIGaG~aG~~aA~~l~~~g~~---v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~ 77 (468)
T PRK14694 1 MMSDNNLHIAVIGSGGSAMAAALKATERGAR---VTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQ 77 (468)
T ss_pred CCCCCcCCEEEECCCHHHHHHHHHHHhCCCc---EEEEEccccccceecCCccccHHHHHHHHHHHHHhhccccCCcccC
Confidence 55 3579999999999999999999999987 99999975321 122333443321110 0 000
Q ss_pred -CCcccc--cCC--C----CCC-CChhhHhh-cCcEEEcCCeeEEEECCCCEEEccCC--cEEEcceEEEecCCCccccc
Q 013914 64 -PGFHVC--VGS--G----GER-LLPEWYKE-KGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVLRLT 130 (434)
Q Consensus 64 -~~~~~~--~~~--~----~~~-~~~~~~~~-~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lvlAtG~~~~~~~ 130 (434)
+.+.+. ... . ... .....++. .+++++.+ ++..++.+...|.+.++ .+++||+||||||++|+.|+
T Consensus 78 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g-~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~ 156 (468)
T PRK14694 78 APVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNG-EARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPP 156 (468)
T ss_pred CCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEE-EEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCC
Confidence 000000 000 0 000 01122333 37999997 78888888778887776 37999999999999999887
Q ss_pred CCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHH
Q 013914 131 DFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAF 210 (434)
Q Consensus 131 ~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~ 210 (434)
++|.+...+++. .+...+. . .+++++|||+|++|+|+|..|.+.|.+|+++.+ +++++. +++++.+.
T Consensus 157 ---i~G~~~~~~~~~---~~~~~l~----~-~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~-~~~l~~-~~~~~~~~ 223 (468)
T PRK14694 157 ---VPGLAETPYLTS---TSALELD----H-IPERLLVIGASVVALELAQAFARLGSRVTVLAR-SRVLSQ-EDPAVGEA 223 (468)
T ss_pred ---CCCCCCCceEcc---hhhhchh----c-CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEC-CCCCCC-CCHHHHHH
Confidence 566543334332 2222221 1 478999999999999999999999999999986 466665 78999999
Q ss_pred HHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhh---ccccccCCcEEeCCCCCC
Q 013914 211 YEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK---GQVAENKGGIETDDFFKT 287 (434)
Q Consensus 211 ~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~---~~~~~~~g~i~vd~~~~t 287 (434)
+.+.+++.||++++++.+.+++.+ +....+.+.++ ++++|.|++|+|++||++++. .++..++|+|.||+++||
T Consensus 224 l~~~l~~~GI~v~~~~~v~~i~~~--~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~~~T 300 (468)
T PRK14694 224 IEAAFRREGIEVLKQTQASEVDYN--GREFILETNAG-TLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEHLQT 300 (468)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEc--CCEEEEEECCC-EEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCCccc
Confidence 999999999999999999999862 33334555554 799999999999999998752 345556788999999999
Q ss_pred CCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC----
Q 013914 288 SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV---- 363 (434)
Q Consensus 288 ~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~---- 363 (434)
++|+|||+|||+..+ ..+..|..+|+.||.||++... ...+..+|.+.++.+++ ..+|.++
T Consensus 301 s~~~IyA~GD~~~~~----------~~~~~A~~~G~~aa~~i~~~~~---~~~~~~~p~~~~~~p~~--a~vGlte~~a~ 365 (468)
T PRK14694 301 TVSGIYAAGDCTDQP----------QFVYVAAAGGSRAAINMTGGDA---SLDLSAMPEVIFTDPQV--ATVGLSEAEAQ 365 (468)
T ss_pred CCCCEEEEeecCCCc----------ccHHHHHHHHHHHHHHhcCCCc---ccccCCCCeEEECCCCe--EEeeCCHHHHH
Confidence 999999999999765 3466788899999999986532 25566788877665555 4557664
Q ss_pred --CCEE-----EEcCCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCc
Q 013914 364 --GDTV-----LFGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSF 430 (434)
Q Consensus 364 --~~~~-----~~~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~ 430 (434)
|..+ .+....+. ..+.+|+|+++ ++++|||+|++|+++.++ +.++.||++++|++|+..+.-+.+++
T Consensus 366 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~ 445 (468)
T PRK14694 366 AQGYDTDSRTLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIADELFPYLTM 445 (468)
T ss_pred HcCCceEEEEEecccchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCch
Confidence 2111 11111111 23567899887 579999999999998885 99999999999999887777777766
Q ss_pred cc
Q 013914 431 AS 432 (434)
Q Consensus 431 ~~ 432 (434)
++
T Consensus 446 ~e 447 (468)
T PRK14694 446 VE 447 (468)
T ss_pred HH
Confidence 54
No 16
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=3.3e-49 Score=385.33 Aligned_cols=395 Identities=21% Similarity=0.258 Sum_probs=289.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCccCccccCCCCC----CCCCCccccc------CC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGT----ARLPGFHVCV------GS 72 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~------~~ 72 (434)
+|++|||+|++|+.+|..++++|.+ |+|||++...+ ...|.++|.++..... .....+.... ..
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~---v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 78 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGAD---VTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARV 78 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCe---EEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCccccc
Confidence 4899999999999999999999887 99999976422 2234445555432100 0000000000 00
Q ss_pred --------------CCCCCChhhHhhcCcEEEcCCeeEEEE--CCCCE--EEccCCc--EEEcceEEEecCCCcccccCC
Q 013914 73 --------------GGERLLPEWYKEKGIELILSTEIVRAD--IASKT--LLSATGL--IFKYQILVIATGSTVLRLTDF 132 (434)
Q Consensus 73 --------------~~~~~~~~~~~~~~v~~~~~~~v~~i~--~~~~~--v~~~~~~--~~~~d~lvlAtG~~~~~~~~~ 132 (434)
.......+.+++.+++++.+ .+..++ .+.++ +...+|. ++.||+||+|||++|+.|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~- 156 (466)
T PRK07845 79 DLPAVNARVKALAAAQSADIRARLEREGVRVIAG-RGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPT- 156 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCC-
Confidence 00112334566679999998 555533 34444 4445564 69999999999999986653
Q ss_pred CCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHH
Q 013914 133 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYE 212 (434)
Q Consensus 133 ~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~ 212 (434)
++.+...+++..+..+... .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.
T Consensus 157 --~~~~~~~v~~~~~~~~~~~--------~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~ 225 (466)
T PRK07845 157 --AEPDGERILTWRQLYDLDE--------LPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG-EDADAAEVLE 225 (466)
T ss_pred --CCCCCceEEeehhhhcccc--------cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC-CCHHHHHHHH
Confidence 3333455666554433221 3689999999999999999999999999999999999987 7999999999
Q ss_pred HHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-cCCcEEeCCCCCCC
Q 013914 213 GYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTS 288 (434)
Q Consensus 213 ~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~ 288 (434)
+.|+++||++++++++.+++.++++ ..+.+.+|+++++|.|++++|++||++.+ +.++.+ ++|+|.||+++||+
T Consensus 226 ~~L~~~gV~i~~~~~v~~v~~~~~~--~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts 303 (466)
T PRK07845 226 EVFARRGMTVLKRSRAESVERTGDG--VVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTS 303 (466)
T ss_pred HHHHHCCcEEEcCCEEEEEEEeCCE--EEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcccC
Confidence 9999999999999999999763333 45677788899999999999999999853 446666 56889999999999
Q ss_pred CCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC-----
Q 013914 289 ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV----- 363 (434)
Q Consensus 289 ~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~----- 363 (434)
+|||||+|||++.+ +++..|..||+.|+.|+++... .+..+..+|+.+++.++++.+ |.++
T Consensus 304 ~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~--~~~~~~~~p~~vf~~p~~a~v--Glte~~a~~ 369 (466)
T PRK07845 304 VPGIYAAGDCTGVL----------PLASVAAMQGRIAMYHALGEAV--SPLRLKTVASNVFTRPEIATV--GVSQAAIDS 369 (466)
T ss_pred CCCEEEEeeccCCc----------cchhHHHHHHHHHHHHHcCCCC--CcCCCCCCCEEEeCCCcceee--cCCHHHHHh
Confidence 99999999999754 5678899999999999997531 124567788877776665555 6654
Q ss_pred -CCEEE-----EcCCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCcc
Q 013914 364 -GDTVL-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFA 431 (434)
Q Consensus 364 -~~~~~-----~~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~ 431 (434)
+..+. +.+..+. ...++|+|+++ ++++|||+|++|+++.++ +.++.||++++|++||..+..+.++|.
T Consensus 370 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~ 449 (466)
T PRK07845 370 GEVPARTVMLPLATNPRAKMSGLRDGFVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQTFTVYPSLS 449 (466)
T ss_pred CCCceEEEEEecccCchhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCcCCCCCHH
Confidence 21111 2221111 23568898887 579999999999999885 999999999999998887766666665
Q ss_pred c
Q 013914 432 S 432 (434)
Q Consensus 432 ~ 432 (434)
+
T Consensus 450 e 450 (466)
T PRK07845 450 G 450 (466)
T ss_pred H
Confidence 4
No 17
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=1.6e-49 Score=386.16 Aligned_cols=394 Identities=20% Similarity=0.243 Sum_probs=285.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc-CCCCCcEEEEeCC--------C-C---CCCCCCccCccccCCCCC----CCCCCc
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKE--------A-V---APYERPALSKAYLFPEGT----ARLPGF 66 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~-g~~~~~V~vie~~--------~-~---~~~~~~~~~~~~~~~~~~----~~~~~~ 66 (434)
++|||+|||||++|..||..++++ |.+ |+|||++ . . +....|.++|.++..... .....+
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~---V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~ 78 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKR---VAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGF 78 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCE---EEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhcc
Confidence 579999999999999999999996 777 9999973 1 1 123345566665543311 011111
Q ss_pred ccccC--C---C--------------CCCCChhhHhh-cCcEEEcCCeeEEEECCCCEEEccC--------CcEEEcceE
Q 013914 67 HVCVG--S---G--------------GERLLPEWYKE-KGIELILSTEIVRADIASKTLLSAT--------GLIFKYQIL 118 (434)
Q Consensus 67 ~~~~~--~---~--------------~~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~~v~~~~--------~~~~~~d~l 118 (434)
..... . + ........++. .+++++.+... ..+.++|.+.+ .+++.||+|
T Consensus 79 gi~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~---f~~~~~v~V~~~~~~~~~~~~~~~~d~l 155 (486)
T TIGR01423 79 GWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGA---LEDKNVVLVRESADPKSAVKERLQAEHI 155 (486)
T ss_pred CeeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEE---EccCCEEEEeeccCCCCCcceEEECCEE
Confidence 11000 0 0 00111223444 48999998432 23566665531 247999999
Q ss_pred EEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhC---CCeEEEEccC
Q 013914 119 VIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN---NIDVSMVYPE 195 (434)
Q Consensus 119 vlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~---g~~v~lv~~~ 195 (434)
|||||++|..|+ ++|.+ .++ +..++..+. ..+++++|||+|++|+|+|..+..+ |.+|+++++.
T Consensus 156 IIATGs~p~~p~---i~G~~--~~~---~~~~~~~~~-----~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~ 222 (486)
T TIGR01423 156 LLATGSWPQMLG---IPGIE--HCI---SSNEAFYLD-----EPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRN 222 (486)
T ss_pred EEecCCCCCCCC---CCChh--hee---chhhhhccc-----cCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecC
Confidence 999999998877 56643 222 333333221 1478999999999999999877665 9999999999
Q ss_pred CccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhh---ccc
Q 013914 196 PWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK---GQV 272 (434)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~---~~~ 272 (434)
+++++. +++++.+.+.+.|++.||++++++.++++...+++ ...+.+.+|+++++|.+++|+|++||++.+. .++
T Consensus 223 ~~il~~-~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~-~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl 300 (486)
T TIGR01423 223 NMILRG-FDSTLRKELTKQLRANGINIMTNENPAKVTLNADG-SKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGV 300 (486)
T ss_pred Cccccc-cCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCc-eEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCc
Confidence 999886 89999999999999999999999999999863333 3456777888999999999999999998652 456
Q ss_pred cc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEec
Q 013914 273 AE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRA 351 (434)
Q Consensus 273 ~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~ 351 (434)
.. ++|+|.||+++||++|||||+|||++.+ .....|..||+.+++||++... ....+..+|+.+++.
T Consensus 301 ~~~~~G~I~Vd~~l~Ts~~~IyA~GDv~~~~----------~l~~~A~~qG~~aa~ni~g~~~--~~~~~~~vp~~vft~ 368 (486)
T TIGR01423 301 ELTKKGAIQVDEFSRTNVPNIYAIGDVTDRV----------MLTPVAINEGAAFVDTVFGNKP--RKTDHTRVASAVFSI 368 (486)
T ss_pred eECCCCCEecCCCCcCCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHhCCCC--cccCCCCCCEEEeCC
Confidence 66 6788999999999999999999999754 3566789999999999987431 124556789988888
Q ss_pred cCceeEEeecCCCC------EEEEc-----CCCcc--c--CCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHc
Q 013914 352 FDLSWQFYGDNVGD------TVLFG-----DNDLA--S--ATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARV 413 (434)
Q Consensus 352 ~~~~~~~~g~~~~~------~~~~~-----~~~~~--~--~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~ 413 (434)
|+++.+ |+++.+ .+... ..... . ..+.|+|+++ ++++|||+|++|+++.++ +.++.||+.
T Consensus 369 peia~v--Glte~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI~~~~~ai~~ 446 (486)
T TIGR01423 369 PPIGTC--GLVEEDAAKKFEKVAVYESSFTPLMHNISGSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLKL 446 (486)
T ss_pred CceEEe--eCCHHHHHhcCCceEEEEEeeCchhhhhccCccCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHc
Confidence 775555 766421 11111 00000 1 1246888887 579999999999999885 999999999
Q ss_pred CCCCCChhhhhccCCCccc
Q 013914 414 QPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 414 ~~~~~~~~~l~~~~~~~~~ 432 (434)
++|++|+..+..+.+++++
T Consensus 447 ~~t~~dl~~~~~~hPt~sE 465 (486)
T TIGR01423 447 NAKISDFYNTIGVHPTSAE 465 (486)
T ss_pred CCCHHHHhhcccCCCCcHH
Confidence 9999988888777777764
No 18
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=5.1e-49 Score=381.71 Aligned_cols=392 Identities=18% Similarity=0.232 Sum_probs=284.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCccCccccCCCCCC----CCCCcccccC---C--
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEGTA----RLPGFHVCVG---S-- 72 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~---~-- 72 (434)
+||++|||+||+|.+||.. +.|.+ |+|||++... .+..|.++|.++...... ..+.+..... .
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~---V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 75 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKR---IAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRW 75 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCe---EEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCH
Confidence 4899999999999988865 35776 9999997542 233455666544322110 0000000000 0
Q ss_pred ------------CCCC-CChhh-HhhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCC
Q 013914 73 ------------GGER-LLPEW-YKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD 138 (434)
Q Consensus 73 ------------~~~~-~~~~~-~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~ 138 (434)
.... ..... ++..|++++.+.... + +.++|.+.+++++.||++|||||++|+.|+ +++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~-~--~~~~V~v~~g~~~~~d~lViATGs~p~~p~---i~g~~ 149 (451)
T PRK07846 76 PDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARF-I--GPKTLRTGDGEEITADQVVIAAGSRPVIPP---VIADS 149 (451)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEE-e--cCCEEEECCCCEEEeCEEEEcCCCCCCCCC---CCCcC
Confidence 0001 12233 566789999984433 3 678888887778999999999999998887 45544
Q ss_pred CCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhc
Q 013914 139 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK 218 (434)
Q Consensus 139 ~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (434)
...++ +.+++..+.. .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+ +.
T Consensus 150 ~~~~~---~~~~~~~l~~-----~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~~~~l~~l~-~~ 219 (451)
T PRK07846 150 GVRYH---TSDTIMRLPE-----LPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH-LDDDISERFTELA-SK 219 (451)
T ss_pred CccEE---chHHHhhhhh-----cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHHH-hc
Confidence 33333 3444443322 4789999999999999999999999999999999999875 7999998887755 56
Q ss_pred CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhh---ccccc-cCCcEEeCCCCCCCCCcEEE
Q 013914 219 GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK---GQVAE-NKGGIETDDFFKTSADDVYA 294 (434)
Q Consensus 219 GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~---~~~~~-~~g~i~vd~~~~t~~~~iya 294 (434)
||++++++++++++.. ++ ...+.+.+|+++++|.|++|+|++||++++. .++.. ++|+|.||+++||++|||||
T Consensus 220 ~v~i~~~~~v~~i~~~-~~-~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA 297 (451)
T PRK07846 220 RWDVRLGRNVVGVSQD-GS-GVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFA 297 (451)
T ss_pred CeEEEeCCEEEEEEEc-CC-EEEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcccCCCCEEE
Confidence 7999999999999863 22 2456777888999999999999999999753 35666 67889999999999999999
Q ss_pred ecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC------CCEEE
Q 013914 295 VGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GDTVL 368 (434)
Q Consensus 295 ~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~~~ 368 (434)
+|||++.+ +....|.+||+.+++||++.... ....+..+|+.+++.++++.+ |.++ |..+.
T Consensus 298 ~GD~~~~~----------~l~~~A~~~g~~~a~ni~~~~~~-~~~~~~~~p~~if~~p~ia~v--Glte~~a~~~g~~~~ 364 (451)
T PRK07846 298 LGDVSSPY----------QLKHVANHEARVVQHNLLHPDDL-IASDHRFVPAAVFTHPQIASV--GLTENEARAAGLDIT 364 (451)
T ss_pred EeecCCCc----------cChhHHHHHHHHHHHHHcCCCCc-cccCCCCCCeEEECCCCcEeE--eCCHHHHHhcCCCEE
Confidence 99999864 34567889999999999865211 124667789888776665555 7664 22121
Q ss_pred E-----cCCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhh-ccCCCccc
Q 013914 369 F-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLK-NEGLSFAS 432 (434)
Q Consensus 369 ~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~-~~~~~~~~ 432 (434)
. .+..+. ...++|+|+++ ++++|||+|++|+++.++ +.++.||++++|++|+..+. .+.++|.+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e 440 (451)
T PRK07846 365 VKVQNYGDVAYGWAMEDTTGFVKLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMARGQYWIHPALPE 440 (451)
T ss_pred EEEEecCcchhhhhCCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCCccCCcHHH
Confidence 1 121111 23567888887 579999999999999885 99999999999999877644 46666654
No 19
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=3.2e-49 Score=384.36 Aligned_cols=395 Identities=18% Similarity=0.222 Sum_probs=282.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC-CC----CCCCccCccccCCCCCCCCCCcccccCC-C----
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV-AP----YERPALSKAYLFPEGTARLPGFHVCVGS-G---- 73 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---- 73 (434)
+.|||+|||||+||++||.+|+++|.+ |+|||+.+. .+ ...|..++.++..... ...|...... .
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~---V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~--~~~~~~~~~~~~~~~~ 76 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWR---VALIEQSNAMYGGTCINIGCIPTKTLVHDAQQ--HTDFVRAIQRKNEVVN 76 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCe---EEEEcCCCCccceeEeeccccchHHHHHHhcc--CCCHHHHHHHHHHHHH
Confidence 469999999999999999999999987 999999743 11 1112223333222110 0111000000 0
Q ss_pred -CC-CCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCCc-EEEcceEEEecCCCcccccCCCCCCCC-CCCeEEecCHH
Q 013914 74 -GE-RLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL-IFKYQILVIATGSTVLRLTDFGVEGAD-AKNIFYLREID 149 (434)
Q Consensus 74 -~~-~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~-~~~~d~lvlAtG~~~~~~~~~~~~g~~-~~~v~~~~~~~ 149 (434)
.. .......+..+++++.+ .+..++.....+...++. ++.||+||||||++|..|+ ++|.+ .+++++...
T Consensus 77 ~~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~---i~G~~~~~~v~~~~~-- 150 (441)
T PRK08010 77 FLRNKNFHNLADMPNIDVIDG-QAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPP---IPGITTTPGVYDSTG-- 150 (441)
T ss_pred HHHHhHHHHHhhcCCcEEEEE-EEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCC---CCCccCCCCEEChhH--
Confidence 00 00112222348999887 676676655556556664 6999999999999998887 56643 345554332
Q ss_pred HHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEE
Q 013914 150 DADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAV 229 (434)
Q Consensus 150 ~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~ 229 (434)
...+ . ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++.||+++++++++
T Consensus 151 -~~~~----~-~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~gV~v~~~~~v~ 223 (441)
T PRK08010 151 -LLNL----K-ELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR-EDRDIADNIATILRDQGVDIILNAHVE 223 (441)
T ss_pred -hhcc----c-ccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC-cCHHHHHHHHHHHHhCCCEEEeCCEEE
Confidence 2221 1 14789999999999999999999999999999999999887 689999999999999999999999999
Q ss_pred EEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-cCCcEEeCCCCCCCCCcEEEecccccccccc
Q 013914 230 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKL 305 (434)
Q Consensus 230 ~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~ 305 (434)
+++.+ ++. ..+.++++ ++++|.+++|+|++||++++ ..++.+ ++|+|.||+++||++|||||+|||++.+.
T Consensus 224 ~i~~~-~~~-v~v~~~~g-~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~-- 298 (441)
T PRK08010 224 RISHH-ENQ-VQVHSEHA-QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTGGLQ-- 298 (441)
T ss_pred EEEEc-CCE-EEEEEcCC-eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc--
Confidence 99863 232 34555555 68999999999999999854 345666 56889999999999999999999998653
Q ss_pred cCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC------CCEEE-----EcCCCc
Q 013914 306 YREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GDTVL-----FGDNDL 374 (434)
Q Consensus 306 ~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~~~-----~~~~~~ 374 (434)
....|..+|+.++.|+++... .....+..+|+..++.++++ .+|.++ |..+. +.+..+
T Consensus 299 --------~~~~a~~~~~~~~~~~~g~~~-~~~~~~~~~p~~~~~~p~ia--~vGlte~~a~~~g~~~~~~~~~~~~~~~ 367 (441)
T PRK08010 299 --------FTYISLDDYRIVRDELLGEGK-RSTDDRKNVPYSVFMTPPLS--RVGMTEEQARESGADIQVVTLPVAAIPR 367 (441)
T ss_pred --------chhHHHHHHHHHHHHHcCCCC-cccCccCCCCEEEECCCCce--eeeCCHHHHHHcCCCeEEEEEecCcChh
Confidence 445577899999999986421 11235566887766555555 447664 22111 122222
Q ss_pred c---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 375 A---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 375 ~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
. ..+.+|+|+++ ++++|||+|++|+++.++ +.++.+|++++|++|+.....+.++|++
T Consensus 368 ~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 431 (441)
T PRK08010 368 ARVMNDTRGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSE 431 (441)
T ss_pred hhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhccccCCchHH
Confidence 1 23466888887 579999999999999885 9999999999999988766666666654
No 20
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=1.8e-47 Score=392.16 Aligned_cols=382 Identities=24% Similarity=0.369 Sum_probs=311.6
Q ss_pred EEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhcCc
Q 013914 8 YVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGI 87 (434)
Q Consensus 8 vvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 87 (434)
|||||+|+||+++|.+|++.+.+..+|+||++++..+|.++.++..+........+ .....+++++.++
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l-----------~~~~~~~~~~~gv 69 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDI-----------TLNSKDWYEKHGI 69 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHc-----------cCCCHHHHHHCCC
Confidence 68999999999999999987644567999999999999988776533211111111 1345678888999
Q ss_pred EEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEE
Q 013914 88 ELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAV 167 (434)
Q Consensus 88 ~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ 167 (434)
+++.++.|+.|+++.++|.+.++.++.||+||||||+.|+.|+ +||.+.++++++++++++..+++.+. .+++++
T Consensus 70 ~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~---ipG~~~~~v~~~rt~~d~~~i~~~~~--~~k~vv 144 (785)
T TIGR02374 70 TLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPFILP---IPGADKKGVYVFRTIEDLDAIMAMAQ--RFKKAA 144 (785)
T ss_pred EEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcCCCC---CCCCCCCCEEEeCCHHHHHHHHHHhh--cCCeEE
Confidence 9999999999999999999999989999999999999999887 68877788999999999998887765 478999
Q ss_pred EECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC
Q 013914 168 VVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG 247 (434)
Q Consensus 168 ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g 247 (434)
|||+|++|+|+|..|.+.|.+|+++++.++++++.+++...+.+.+.+++.||++++++.++++.. ++.+..+.+.+|
T Consensus 145 VVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG 222 (785)
T TIGR02374 145 VIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDG 222 (785)
T ss_pred EECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCC
Confidence 999999999999999999999999999999988778999999999999999999999999999975 456678889999
Q ss_pred cEEECCEEEEcccCccChhhhhc-cccccCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHH
Q 013914 248 RTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAV 326 (434)
Q Consensus 248 ~~~~~D~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa 326 (434)
+++++|+||+++|.+|+++++.. ++... ++|.||++|||++|+|||+|||+..+...+ ..+..|..||+.+|
T Consensus 223 ~~i~~D~Vi~a~G~~Pn~~la~~~gl~~~-ggI~Vd~~~~Ts~p~IyA~GD~a~~~~~~~------gl~~~a~~qa~vaA 295 (785)
T TIGR02374 223 SSLEADLIVMAAGIRPNDELAVSAGIKVN-RGIIVNDSMQTSDPDIYAVGECAEHNGRVY------GLVAPLYEQAKVLA 295 (785)
T ss_pred CEEEcCEEEECCCCCcCcHHHHhcCCccC-CCEEECCCcccCCCCEEEeeecceeCCccc------ccHHHHHHHHHHHH
Confidence 99999999999999999998754 55554 789999999999999999999998765322 46788999999999
Q ss_pred HHHhccCCCCcccCCCCC-CeeEEeccCceeEEeecCCCC----EEEEcCCCcccCCCcEEEEEEeCCEEEEEEEecCCH
Q 013914 327 KTIMATEGGKTVTGYDYL-PYFYSRAFDLSWQFYGDNVGD----TVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTP 401 (434)
Q Consensus 327 ~~i~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~~~ 401 (434)
.||++... .+|... .....+.+++.+...|..... .+.+.+.. ...|.++++++++|+|++++|+ .
T Consensus 296 ~ni~g~~~----~~~~~~~~~~~lk~~g~~v~s~G~~~~~~~~~~~~~~d~~----~~~y~kl~~~~~rLlGavlvgd-~ 366 (785)
T TIGR02374 296 DHICGVEC----EEYEGSDLSAKLKLLGVDVWSAGDAQETERTTSIKIYDEQ----KGIYKKLVLSDDKLLGAVLFGD-T 366 (785)
T ss_pred HHhcCCCC----cCCCCCccceEEEECCcceEecccCCCCCCcEEEEEEcCC----CCEEEEEEEECCEEEEEEEECC-H
Confidence 99987531 234332 334566788888888864321 22222222 4568888999999999999995 4
Q ss_pred HHHHHHHHHHHcCCCCCChhhh
Q 013914 402 EENKAIAKVARVQPSVESLDVL 423 (434)
Q Consensus 402 ~~~~~~~~~i~~~~~~~~~~~l 423 (434)
.+...+..++.++..+.+...|
T Consensus 367 ~~~~~L~~li~~~~~l~~~~~l 388 (785)
T TIGR02374 367 SDYGRLLDMVLKQADISEDPAI 388 (785)
T ss_pred HHHHHHHHHHHcCCCCCcChhh
Confidence 5778888899998877653233
No 21
>PLN02546 glutathione reductase
Probab=100.00 E-value=5.5e-49 Score=386.24 Aligned_cols=392 Identities=20% Similarity=0.235 Sum_probs=286.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC----------CC---CCCCCCccCccccCCCCC----CCCCCcc
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE----------AV---APYERPALSKAYLFPEGT----ARLPGFH 67 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~----------~~---~~~~~~~~~~~~~~~~~~----~~~~~~~ 67 (434)
+|||+|||+|++|+.||..++++|.+ |+|||+. .. +....|.++|.++..... .....+.
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~---V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g 155 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGAS---AAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFG 155 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcC
Confidence 58999999999999999999999987 9999962 11 223334455555432211 0011111
Q ss_pred cccCC------------------CCCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccc
Q 013914 68 VCVGS------------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 68 ~~~~~------------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
..... .....+...+++.|++++.+ .+..+++ +++.+ +|+++.||+||||||++|..|
T Consensus 156 ~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G-~a~~vd~--~~V~v-~G~~~~~D~LVIATGs~p~~P 231 (558)
T PLN02546 156 WKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEG-RGKIVDP--HTVDV-DGKLYTARNILIAVGGRPFIP 231 (558)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEccC--CEEEE-CCEEEECCEEEEeCCCCCCCC
Confidence 11000 00112233455678999997 6666654 45655 567899999999999999888
Q ss_pred cCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHH
Q 013914 130 TDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAA 209 (434)
Q Consensus 130 ~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~ 209 (434)
+ ++|.+ .++ +..++..+. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+
T Consensus 232 ~---IpG~~--~v~---~~~~~l~~~-----~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~-~d~~~~~ 297 (558)
T PLN02546 232 D---IPGIE--HAI---DSDAALDLP-----SKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG-FDEEVRD 297 (558)
T ss_pred C---CCChh--hcc---CHHHHHhcc-----ccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc-cCHHHHH
Confidence 7 56543 222 333333221 14789999999999999999999999999999999998875 7999999
Q ss_pred HHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-cCCcEEeCCCC
Q 013914 210 FYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFF 285 (434)
Q Consensus 210 ~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~ 285 (434)
.+.+.|++.||++++++.+.++....++.+ .+.+.+++...+|.|++++|++||++++ ..++.. ++|+|.||+++
T Consensus 298 ~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l 376 (558)
T PLN02546 298 FVAEQMSLRGIEFHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYS 376 (558)
T ss_pred HHHHHHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCc
Confidence 999999999999999999999976444433 4566666555589999999999999853 346666 56889999999
Q ss_pred CCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCCCC
Q 013914 286 KTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD 365 (434)
Q Consensus 286 ~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~ 365 (434)
||++|||||+|||++.+ .++..|..||+.+|.||++.... ...|..+|+.+++.++++.+ |+++.+
T Consensus 377 ~Ts~p~IYAaGDv~~~~----------~l~~~A~~~g~~~a~~i~g~~~~--~~~~~~vp~~vft~Peia~V--Glte~e 442 (558)
T PLN02546 377 RTSVPSIWAVGDVTDRI----------NLTPVALMEGGALAKTLFGNEPT--KPDYRAVPSAVFSQPPIGQV--GLTEEQ 442 (558)
T ss_pred eeCCCCEEEeeccCCCc----------ccHHHHHHHHHHHHHHHcCCCCC--cCCCCCCCEEEeCCchHhhc--cCCHHH
Confidence 99999999999999754 45678899999999999975321 24677899887777766655 655421
Q ss_pred ------EEEEcC--CCcc------cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCC
Q 013914 366 ------TVLFGD--NDLA------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGL 428 (434)
Q Consensus 366 ------~~~~~~--~~~~------~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~ 428 (434)
.+.... .... ...+.|+|+++ ++++|||+|++|+++.++ +.++.||++++|++|+..+..+.+
T Consensus 443 A~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ILGa~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hP 522 (558)
T PLN02546 443 AIEEYGDVDVFTANFRPLKATLSGLPDRVFMKLIVCAKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATVGIHP 522 (558)
T ss_pred HHHcCCCeEEEEEecccchhhhhCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCC
Confidence 111111 1100 13467898877 579999999999999885 999999999999998877766666
Q ss_pred Cccc
Q 013914 429 SFAS 432 (434)
Q Consensus 429 ~~~~ 432 (434)
++++
T Consensus 523 T~~E 526 (558)
T PLN02546 523 TAAE 526 (558)
T ss_pred ChHH
Confidence 6654
No 22
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.2e-48 Score=382.82 Aligned_cols=396 Identities=25% Similarity=0.321 Sum_probs=282.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCccCccccCCCCC----CCCCCcccccCC---C
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGT----ARLPGFHVCVGS---G 73 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---~ 73 (434)
..|||+||||||||++||..|+++|.+ |+|||++...+ ...|.+++.++..... .....+...... .
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~---V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLK---VAIVEKEKLGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGID 79 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCc---EEEEeccccccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccC
Confidence 469999999999999999999999987 99999986322 2233444443322211 000000000000 0
Q ss_pred --------------CCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccC-CcEEEcceEEEecCCCcccccCCCCCCCC
Q 013914 74 --------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT-GLIFKYQILVIATGSTVLRLTDFGVEGAD 138 (434)
Q Consensus 74 --------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~-~~~~~~d~lvlAtG~~~~~~~~~~~~g~~ 138 (434)
....+...+++.+++++.+ .+..+++...++...+ +.++.||+||+|||++|..|+. ++ .+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~pg--~~-~~ 155 (462)
T PRK06416 80 FKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRG-EAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRELPG--IE-ID 155 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCCCC--CC-CC
Confidence 0011223455679999997 5555555444444323 3679999999999999975432 21 11
Q ss_pred CCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhc
Q 013914 139 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK 218 (434)
Q Consensus 139 ~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (434)
...+++ ..++..+.. .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.
T Consensus 156 ~~~v~~---~~~~~~~~~-----~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~ 226 (462)
T PRK06416 156 GRVIWT---SDEALNLDE-----VPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG-EDKEISKLAERALKKR 226 (462)
T ss_pred CCeEEc---chHhhCccc-----cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc-CCHHHHHHHHHHHHHc
Confidence 122333 333333221 4689999999999999999999999999999999999886 7999999999999999
Q ss_pred CcEEEcCCeEEEEEecCCCcEEEEEeCCC---cEEECCEEEEcccCccChhhh---hccccccCCcEEeCCCCCCCCCcE
Q 013914 219 GIKIIKGTVAVGFTTNADGEVKEVKLKDG---RTLEADIVVVGVGGRPLISLF---KGQVAENKGGIETDDFFKTSADDV 292 (434)
Q Consensus 219 GV~~~~~~~v~~i~~~~~g~v~~v~~~~g---~~~~~D~vi~a~G~~p~~~~~---~~~~~~~~g~i~vd~~~~t~~~~i 292 (434)
||++++++++++++.+++ ...+.+.+| +++++|.+++|+|++|+++++ ..++..++|++.||+++||++|+|
T Consensus 227 gV~i~~~~~V~~i~~~~~--~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i~vd~~~~t~~~~V 304 (462)
T PRK06416 227 GIKIKTGAKAKKVEQTDD--GVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFIEVDEQLRTNVPNI 304 (462)
T ss_pred CCEEEeCCEEEEEEEeCC--EEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeecCCEEeECCCCccCCCCE
Confidence 999999999999987332 234566555 679999999999999999875 345555678899999999999999
Q ss_pred EEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCCC------CE
Q 013914 293 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG------DT 366 (434)
Q Consensus 293 ya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~------~~ 366 (434)
||+|||+..+ ..+..|..||+.+|.||++... ..++..+|.+.. ++..+..+|.++. ..
T Consensus 305 yAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~---~~~~~~~~~~~~--~~~~~a~vG~te~~a~~~g~~ 369 (462)
T PRK06416 305 YAIGDIVGGP----------MLAHKASAEGIIAAEAIAGNPH---PIDYRGIPAVTY--THPEVASVGLTEAKAKEEGFD 369 (462)
T ss_pred EEeeecCCCc----------chHHHHHHHHHHHHHHHcCCCC---CCCCCCCCeEEE--CCCceEEEeCCHHHHHhcCCC
Confidence 9999999743 4678899999999999997431 233555666555 4455566677642 21
Q ss_pred EEE-----cCCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 367 VLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 367 ~~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
+.. ....+. ...+.|+|+++ ++++|||+|++|+++.++ +.++.||++++|++||..+..+.++|++
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 446 (462)
T PRK06416 370 VKVVKFPFAGNGKALALGETDGFVKLIFDKKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTIHPHPTLSE 446 (462)
T ss_pred eEEEEEecCcChHhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHH
Confidence 111 111111 24567888877 589999999999999885 9999999999999988887666776654
No 23
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=4.8e-47 Score=361.85 Aligned_cols=361 Identities=21% Similarity=0.324 Sum_probs=286.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhc
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
++|||||||+||+++|..|++.+ ++.+|+||++++..+|.+|.++..+........+. .....+++++.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~-~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~----------~~~~~~~~~~~ 71 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQD-AHIPITLITADSGDEYNKPDLSHVFSQGQRADDLT----------RQSAGEFAEQF 71 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhC-cCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhh----------cCCHHHHHHhC
Confidence 58999999999999999999875 35789999999988898887655443211111110 11234667788
Q ss_pred CcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCc
Q 013914 86 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGK 165 (434)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~ 165 (434)
+++++.++.|+.++++.+.+.+ ++.++.||+||+|||+.|+.|+ ++|.+. +++++++.++..+...+. .+++
T Consensus 72 gv~~~~~~~V~~id~~~~~v~~-~~~~~~yd~LVlATG~~~~~p~---i~G~~~--v~~~~~~~~~~~~~~~~~--~~~~ 143 (377)
T PRK04965 72 NLRLFPHTWVTDIDAEAQVVKS-QGNQWQYDKLVLATGASAFVPP---IPGREL--MLTLNSQQEYRAAETQLR--DAQR 143 (377)
T ss_pred CCEEECCCEEEEEECCCCEEEE-CCeEEeCCEEEECCCCCCCCCC---CCCCce--EEEECCHHHHHHHHHHhh--cCCe
Confidence 9999998899999999888876 5668999999999999998877 576543 888889888887777665 4789
Q ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC
Q 013914 166 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK 245 (434)
Q Consensus 166 v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~ 245 (434)
++|||+|++|+|+|..|.+.|.+|+++++.+++++..+++++.+.+.+.+++.||+++++++++++..+ +....+.+.
T Consensus 144 vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~--~~~~~v~~~ 221 (377)
T PRK04965 144 VLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKT--DSGIRATLD 221 (377)
T ss_pred EEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEcc--CCEEEEEEc
Confidence 999999999999999999999999999999999887778999999999999999999999999999863 223467888
Q ss_pred CCcEEECCEEEEcccCccChhhhhc-cccccCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHH
Q 013914 246 DGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQ 324 (434)
Q Consensus 246 ~g~~~~~D~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~ 324 (434)
+|+++++|.+|+|+|.+|++++++. ++..++ +|.||+++||++|||||+|||+..... ..+.+..|..||+.
T Consensus 222 ~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~~-gi~vd~~l~ts~~~VyA~GD~a~~~~~------~~~~~~~a~~~g~~ 294 (377)
T PRK04965 222 SGRSIEVDAVIAAAGLRPNTALARRAGLAVNR-GIVVDSYLQTSAPDIYALGDCAEINGQ------VLPFLQPIQLSAMA 294 (377)
T ss_pred CCcEEECCEEEECcCCCcchHHHHHCCCCcCC-CEEECCCcccCCCCEEEeeecEeECCc------eeehHHHHHHHHHH
Confidence 9999999999999999999988754 555554 499999999999999999999986532 12567778999999
Q ss_pred HHHHHhccCCCCcccCCCCCCe-eEEeccCceeEEeecCCCCE--EEEcCCCcccCCCcEEEEEEeCCEEEEEEEecCCH
Q 013914 325 AVKTIMATEGGKTVTGYDYLPY-FYSRAFDLSWQFYGDNVGDT--VLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTP 401 (434)
Q Consensus 325 aa~~i~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~~~ 401 (434)
+|+||++.. ..|...+. ...+.+++.+..+|...+.. ....+. ....|.++++++|+|+|+.++|+..
T Consensus 295 ~a~n~~g~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~g~~~~g~~~ 365 (377)
T PRK04965 295 LAKNLLGQN-----TPLKLPAMLVKVKTPELPLQLAGETQRQDLRWQINAE----SQGMVAKGVDEAGQLRAFVVSEDRM 365 (377)
T ss_pred HHHHhcCCC-----cccccCCccEEEecCceeeEECCCCCCCCceEEEEeC----CCCeEEEEEccCCcEEEEEEEChhH
Confidence 999999864 34444333 34567888888888765421 111111 1345778888999999999999865
Q ss_pred HH
Q 013914 402 EE 403 (434)
Q Consensus 402 ~~ 403 (434)
..
T Consensus 366 ~~ 367 (377)
T PRK04965 366 KE 367 (377)
T ss_pred HH
Confidence 43
No 24
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2e-48 Score=379.88 Aligned_cols=396 Identities=22% Similarity=0.274 Sum_probs=278.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC----CCCCCCccCccccCCCCCC------CCCCcccccCC-
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV----APYERPALSKAYLFPEGTA------RLPGFHVCVGS- 72 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~----~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~- 72 (434)
++|||+||||||||++||.+++++|.+ |+|||+... +....|.++|.++...... ....+......
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~---V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~ 78 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGLK---VACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPT 78 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCc
Confidence 369999999999999999999999987 999997432 1233355566554432211 01111100000
Q ss_pred -CCC--------------CCChhhHhhcCcEEEcCCeeEEEECCCCEE--EccCCc--EEEcceEEEecCCCcccccCCC
Q 013914 73 -GGE--------------RLLPEWYKEKGIELILSTEIVRADIASKTL--LSATGL--IFKYQILVIATGSTVLRLTDFG 133 (434)
Q Consensus 73 -~~~--------------~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v--~~~~~~--~~~~d~lvlAtG~~~~~~~~~~ 133 (434)
... .....++++.+++++.+.. .++. .+++ ...++. ++.||+||||||++|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a--~~~~-~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~----- 150 (466)
T PRK06115 79 LNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWG--RLDG-VGKVVVKAEDGSETQLEAKDIVIATGSEPTP----- 150 (466)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE--EEcc-CCEEEEEcCCCceEEEEeCEEEEeCCCCCCC-----
Confidence 000 0112234456788888742 3333 3333 334553 69999999999999852
Q ss_pred CCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHH
Q 013914 134 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG 213 (434)
Q Consensus 134 ~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~ 213 (434)
+||....+...+ +..++..+ . ..+++++|||+|++|+|+|..+.+.|.+|+++++.+++++. +++++.+.+.+
T Consensus 151 ipg~~~~~~~~~-~~~~~~~~----~-~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~-~d~~~~~~l~~ 223 (466)
T PRK06115 151 LPGVTIDNQRII-DSTGALSL----P-EVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG-TDTETAKTLQK 223 (466)
T ss_pred CCCCCCCCCeEE-CHHHHhCC----c-cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-CCHHHHHHHHH
Confidence 344332333222 22333222 1 14799999999999999999999999999999999999987 79999999999
Q ss_pred HHHhcCcEEEcCCeEEEEEecCCCcEEEEEe-CC--CcEEECCEEEEcccCccChhhhh---ccccccCCcEEeCCCCCC
Q 013914 214 YYANKGIKIIKGTVAVGFTTNADGEVKEVKL-KD--GRTLEADIVVVGVGGRPLISLFK---GQVAENKGGIETDDFFKT 287 (434)
Q Consensus 214 ~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~-~~--g~~~~~D~vi~a~G~~p~~~~~~---~~~~~~~g~i~vd~~~~t 287 (434)
.|++.||++++++++++++..+++....+.. .+ ++++++|.|++|+|++||++.+. .++..+.+++.||+++||
T Consensus 224 ~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~vd~~~~T 303 (466)
T PRK06115 224 ALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLANDHHRT 303 (466)
T ss_pred HHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCCEEECCCeec
Confidence 9999999999999999998633332222222 12 35799999999999999998542 245554445889999999
Q ss_pred CCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC----
Q 013914 288 SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV---- 363 (434)
Q Consensus 288 ~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~---- 363 (434)
++|+|||+|||++.+ .+...|.+||+.+++||++... ...+..+|.++++.++++.+ |+++
T Consensus 304 s~~~IyA~GD~~~~~----------~la~~A~~~g~~aa~~i~~~~~---~~~~~~~p~~~~t~p~ia~v--Glte~~a~ 368 (466)
T PRK06115 304 SVPGVWVIGDVTSGP----------MLAHKAEDEAVACIERIAGKAG---EVNYGLIPGVIYTRPEVATV--GKTEEQLK 368 (466)
T ss_pred CCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHcCCCC---CCCCCCCCeEEECCcccEEe--eCCHHHHH
Confidence 999999999999754 4677889999999999987531 25667889888887766555 6654
Q ss_pred --CCEEEE-----cCCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCc
Q 013914 364 --GDTVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSF 430 (434)
Q Consensus 364 --~~~~~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~ 430 (434)
+..+.. ....+. ....+|+|+++ ++++|||+|++|+++.++ +.++.||+.++|++|+..+..+.+++
T Consensus 369 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~dl~~~~~~hPt~ 448 (466)
T PRK06115 369 AEGRAYKVGKFPFTANSRAKINHETEGFAKILADARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTR 448 (466)
T ss_pred HCCCCEEEEEEecccChhhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCccCCCCh
Confidence 221211 222111 23567888887 579999999999999885 99999999999999887776666665
Q ss_pred cc
Q 013914 431 AS 432 (434)
Q Consensus 431 ~~ 432 (434)
.+
T Consensus 449 ~e 450 (466)
T PRK06115 449 SE 450 (466)
T ss_pred HH
Confidence 53
No 25
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.4e-48 Score=382.53 Aligned_cols=401 Identities=24% Similarity=0.284 Sum_probs=283.6
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCccCccccCCCCCC----CCCCcccccCC--
Q 013914 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGTA----RLPGFHVCVGS-- 72 (434)
Q Consensus 2 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-- 72 (434)
|.+.|||+||||||||++||.+|+++|.+ |+|||++...+ ...|.+++.++...... ....+......
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~---v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~ 77 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLK---TALVEKGKLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPA 77 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCe---EEEEEccCCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCc
Confidence 45689999999999999999999999987 99999974321 22234444433221100 00000000000
Q ss_pred -C--------------CCCCChhhHhhcCcEEEcCCeeEEEECC-------CCEEEccCC--cEEEcceEEEecCCCccc
Q 013914 73 -G--------------GERLLPEWYKEKGIELILSTEIVRADIA-------SKTLLSATG--LIFKYQILVIATGSTVLR 128 (434)
Q Consensus 73 -~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~-------~~~v~~~~~--~~~~~d~lvlAtG~~~~~ 128 (434)
. ......+.+++.+++++.+ .+..+++. ...+.+.++ .++.||+||||||++|+.
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~ 156 (472)
T PRK05976 78 LDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVE 156 (472)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCC
Confidence 0 0001123455679999998 67777766 344555565 479999999999999975
Q ss_pred ccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHH
Q 013914 129 LTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIA 208 (434)
Q Consensus 129 ~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~ 208 (434)
++. ++ .+...+++ ..++..+. . .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.
T Consensus 157 ~p~--~~-~~~~~~~~---~~~~~~~~----~-~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~-~~~~~~ 224 (472)
T PRK05976 157 LPG--LP-FDGEYVIS---SDEALSLE----T-LPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT-EDAELS 224 (472)
T ss_pred CCC--CC-CCCceEEc---chHhhCcc----c-cCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc-CCHHHH
Confidence 542 22 12222332 23333221 1 3789999999999999999999999999999999999886 799999
Q ss_pred HHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc--EEECCEEEEcccCccChhhhh---ccccccCCcEEeCC
Q 013914 209 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR--TLEADIVVVGVGGRPLISLFK---GQVAENKGGIETDD 283 (434)
Q Consensus 209 ~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~--~~~~D~vi~a~G~~p~~~~~~---~~~~~~~g~i~vd~ 283 (434)
+.+.+.+++.||++++++++.+++...++.+..+.+.+|+ ++++|.+++|+|++|+++.+. .++..++|++.||+
T Consensus 225 ~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd~ 304 (472)
T PRK05976 225 KEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDD 304 (472)
T ss_pred HHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEECC
Confidence 9999999999999999999999974223334444556663 699999999999999987542 23334578899999
Q ss_pred CCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC
Q 013914 284 FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV 363 (434)
Q Consensus 284 ~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~ 363 (434)
++||+.|+|||+|||+..+ +.+..|..+|+.|+.||.+... ....+...|...+. +..+..+|.++
T Consensus 305 ~l~ts~~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~--~~~~~~~~p~~~~~--~p~~a~vG~te 370 (472)
T PRK05976 305 FCQTKERHIYAIGDVIGEP----------QLAHVAMAEGEMAAEHIAGKKP--RPFDYAAIPACCYT--DPEVASVGLTE 370 (472)
T ss_pred CcccCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHcCCCC--CCCCCCCCCEEEEC--cCceEEEeCCH
Confidence 9999999999999998643 4677899999999999986431 12334456665544 44555667664
Q ss_pred ------CCEEEE-----cCCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhcc
Q 013914 364 ------GDTVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNE 426 (434)
Q Consensus 364 ------~~~~~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~ 426 (434)
|..+.. ....+. ...++|+|+++ ++++|||+|++|+++.++ +.++.||++++|++|+..+..+
T Consensus 371 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~ 450 (472)
T PRK05976 371 EEAKEAGYDVKVGKFPFAANGKALTYGESDGFVKVVADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTIHP 450 (472)
T ss_pred HHHHHcCCCEEEEEEECCcchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccc
Confidence 221211 111111 23567888877 579999999999999885 9999999999999988888777
Q ss_pred CCCccc
Q 013914 427 GLSFAS 432 (434)
Q Consensus 427 ~~~~~~ 432 (434)
.++|.+
T Consensus 451 hPt~~e 456 (472)
T PRK05976 451 HPTLSE 456 (472)
T ss_pred CCChHH
Confidence 777654
No 26
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=9.4e-49 Score=383.43 Aligned_cols=391 Identities=22% Similarity=0.231 Sum_probs=279.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCccCccccCCCCC------CCC--------CCccc
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGT------ARL--------PGFHV 68 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~------~~~--------~~~~~ 68 (434)
|||+||||||||++||..|+++|.+ |+|||++...+ ...|.+++.++..... ..+ ..+..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~---v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 77 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGAS---VAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGE 77 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCcccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHH
Confidence 6999999999999999999999987 99999975422 1123334443321100 000 00000
Q ss_pred ccCC--C----C-CCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCCc-EEEcceEEEecCCCcccccCCCCCCCCCC
Q 013914 69 CVGS--G----G-ERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL-IFKYQILVIATGSTVLRLTDFGVEGADAK 140 (434)
Q Consensus 69 ~~~~--~----~-~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~-~~~~d~lvlAtG~~~~~~~~~~~~g~~~~ 140 (434)
.... . . .......+++.+++++.+ .+.. .+.+++.+.++. .+.||+||||||++|+.|+ ++|.+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~--~~~~~v~v~~g~~~~~~~~lIiATGs~p~~p~---i~G~~~~ 151 (463)
T TIGR02053 78 LLEGKREVVEELRHEKYEDVLSSYGVDYLRG-RARF--KDPKTVKVDLGREVRGAKRFLIATGARPAIPP---IPGLKEA 151 (463)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhCCcEEEEE-EEEE--ccCCEEEEcCCeEEEEeCEEEEcCCCCCCCCC---CCCcccC
Confidence 0000 0 0 011234566779999987 4433 346778776653 6899999999999998887 5665545
Q ss_pred CeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCc
Q 013914 141 NIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGI 220 (434)
Q Consensus 141 ~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV 220 (434)
++++..+ +..+. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.||
T Consensus 152 ~~~~~~~---~~~~~-----~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV 222 (463)
T TIGR02053 152 GYLTSEE---ALALD-----RIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR-EEPEISAAVEEALAEEGI 222 (463)
T ss_pred ceECchh---hhCcc-----cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc-cCHHHHHHHHHHHHHcCC
Confidence 5554332 22111 13689999999999999999999999999999999999886 799999999999999999
Q ss_pred EEEcCCeEEEEEecCCCcEEEEEeC---CCcEEECCEEEEcccCccChh-h-h-hccccc-cCCcEEeCCCCCCCCCcEE
Q 013914 221 KIIKGTVAVGFTTNADGEVKEVKLK---DGRTLEADIVVVGVGGRPLIS-L-F-KGQVAE-NKGGIETDDFFKTSADDVY 293 (434)
Q Consensus 221 ~~~~~~~v~~i~~~~~g~v~~v~~~---~g~~~~~D~vi~a~G~~p~~~-~-~-~~~~~~-~~g~i~vd~~~~t~~~~iy 293 (434)
+++++++|++++.++++ ..+.+. +++++++|.|++|+|++|+++ + + ..++.. ++|+|.||+++||++|+||
T Consensus 223 ~i~~~~~V~~i~~~~~~--~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~Vy 300 (463)
T TIGR02053 223 EVVTSAQVKAVSVRGGG--KIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIY 300 (463)
T ss_pred EEEcCcEEEEEEEcCCE--EEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccCCCCCEE
Confidence 99999999999873222 334432 235799999999999999998 3 2 345555 5788999999999999999
Q ss_pred EecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC------CCEE
Q 013914 294 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GDTV 367 (434)
Q Consensus 294 a~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~~ 367 (434)
|+|||+..+ ..+..|..||+.||.||++... ....+..+|...+..++ +..+|.++ |..+
T Consensus 301 AiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~--~~~~~~~~p~~~~~~p~--~a~vGlte~~a~~~g~~~ 366 (463)
T TIGR02053 301 AAGDVTGGL----------QLEYVAAKEGVVAAENALGGAN--AKLDLLVIPRVVFTDPA--VASVGLTEAEAQKAGIEC 366 (463)
T ss_pred EeeecCCCc----------ccHhHHHHHHHHHHHHhcCCCC--CccCcCCCCeEEeccCc--eEEEeCCHHHHHhcCCCe
Confidence 999999853 4678899999999999987521 12445567766555454 45557654 2111
Q ss_pred EE-----cCCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCc
Q 013914 368 LF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSF 430 (434)
Q Consensus 368 ~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~ 430 (434)
.. ...++. ...++|+|+++ ++++|||+|++|+++.++ +.++.+|++++|++|+..+..+.+++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~pt~ 440 (463)
T TIGR02053 367 DCRTLPLTNVPRARINRDTRGFIKLVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDTLHPFPTM 440 (463)
T ss_pred EEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCCh
Confidence 11 111111 23567888887 479999999999999885 99999999999999777765444443
No 27
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.9e-48 Score=381.02 Aligned_cols=394 Identities=24% Similarity=0.273 Sum_probs=275.7
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCccCccccCCCCCC-----CCCCcccccCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGTA-----RLPGFHVCVGS 72 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 72 (434)
|| .+|||+||||||||++||.+|+++|.+ |+|||++...+ ...|.+++.++...... ....+... .
T Consensus 1 ~~-~~~DvvIIG~GpaG~~AA~~aa~~G~~---V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~--~ 74 (466)
T PRK07818 1 MM-THYDVVVLGAGPGGYVAAIRAAQLGLK---TAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGIS--G 74 (466)
T ss_pred CC-CcCCEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCC--c
Confidence 55 469999999999999999999999987 99999974321 12233344333221100 00000000 0
Q ss_pred CCCCC------------------ChhhHhhcCcEEEcCCeeEEEECCCCEEEc--cCC--cEEEcceEEEecCCCccccc
Q 013914 73 GGERL------------------LPEWYKEKGIELILSTEIVRADIASKTLLS--ATG--LIFKYQILVIATGSTVLRLT 130 (434)
Q Consensus 73 ~~~~~------------------~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~--~~~--~~~~~d~lvlAtG~~~~~~~ 130 (434)
..... ....++..+++.+.+. ..- .+.+++.+ .++ .++.||+||||||++|+.|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~-~~~--~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p 151 (466)
T PRK07818 75 EVTFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGY-GTF--TDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLP 151 (466)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEE--cCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCCC
Confidence 00000 0111223466666652 221 24455433 344 36899999999999997643
Q ss_pred CCCCCCCC-CCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHH
Q 013914 131 DFGVEGAD-AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAA 209 (434)
Q Consensus 131 ~~~~~g~~-~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~ 209 (434)
+.+ ...+++.. +... ....+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+
T Consensus 152 -----g~~~~~~v~~~~---~~~~-----~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~ 217 (466)
T PRK07818 152 -----GTSLSENVVTYE---EQIL-----SRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN-EDAEVSK 217 (466)
T ss_pred -----CCCCCCcEEchH---HHhc-----cccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc-cCHHHHH
Confidence 322 13344332 2111 1124789999999999999999999999999999999999987 7999999
Q ss_pred HHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC--CC--cEEECCEEEEcccCccChhhh---hccccc-cCCcEEe
Q 013914 210 FYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DG--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIET 281 (434)
Q Consensus 210 ~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~--~g--~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~v 281 (434)
.+.+.|+++||+++++++|++++.+ +....+.+. +| +++++|.|++|+|++||++.+ ..++.+ ++|+|.|
T Consensus 218 ~l~~~l~~~gV~i~~~~~v~~i~~~--~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~v 295 (466)
T PRK07818 218 EIAKQYKKLGVKILTGTKVESIDDN--GSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAI 295 (466)
T ss_pred HHHHHHHHCCCEEEECCEEEEEEEe--CCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEee
Confidence 9999999999999999999999862 222334443 66 379999999999999999853 446665 6788999
Q ss_pred CCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeec
Q 013914 282 DDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGD 361 (434)
Q Consensus 282 d~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~ 361 (434)
|+++||++|+|||+|||+..+ +++..|..||+.||.||++... .....+..+|...++.++++.+ |.
T Consensus 296 d~~~~Ts~p~IyAiGD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~-~~~~~~~~~p~~~~~~p~~a~v--Gl 362 (466)
T PRK07818 296 DDYMRTNVPHIYAIGDVTAKL----------QLAHVAEAQGVVAAETIAGAET-LELGDYRMMPRATFCQPQVASF--GL 362 (466)
T ss_pred CCCcccCCCCEEEEeecCCCc----------ccHhHHHHHHHHHHHHHcCCCC-CccCccCCCCeEEECCCCeEEE--eC
Confidence 999999999999999999743 5678899999999999987532 1112667788877766655544 76
Q ss_pred CC------CCEEEE-----cCCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhh
Q 013914 362 NV------GDTVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLK 424 (434)
Q Consensus 362 ~~------~~~~~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~ 424 (434)
++ |..+.. ....+. ....+|+|+++ ++++|||+|++|++++++ +.++.||++++|++|+....
T Consensus 363 te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~ 442 (466)
T PRK07818 363 TEEQAREEGYDVKVAKFPFTANGKAHGLGDPTGFVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNV 442 (466)
T ss_pred CHHHHHhCCCcEEEEEEECCccchhhhcCCCCeEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCc
Confidence 54 221211 111111 23567888887 579999999999999885 99999999999999888766
Q ss_pred ccCCCccc
Q 013914 425 NEGLSFAS 432 (434)
Q Consensus 425 ~~~~~~~~ 432 (434)
-+.++|++
T Consensus 443 ~~hPt~~e 450 (466)
T PRK07818 443 HTHPTLSE 450 (466)
T ss_pred cCCCchHH
Confidence 66666654
No 28
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=2.5e-47 Score=382.41 Aligned_cols=394 Identities=19% Similarity=0.206 Sum_probs=278.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCccCccccCCCCC------CCC-CCcccccCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEGT------ARL-PGFHVCVGSG 73 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~ 73 (434)
.+|||+||||||||++||..|++.|.+ |+|||++... ....|.+++.++..... ..+ .++.......
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~---v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 173 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGAR---VTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTI 173 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCe---EEEEecCcceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCcc
Confidence 469999999999999999999999987 9999998432 12233444543221110 000 0110000000
Q ss_pred CC----------------CCChhhHhhc-CcEEEcCCeeEEEECCCCEEEccCCc--EEEcceEEEecCCCcccccCCCC
Q 013914 74 GE----------------RLLPEWYKEK-GIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVLRLTDFGV 134 (434)
Q Consensus 74 ~~----------------~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~lvlAtG~~~~~~~~~~~ 134 (434)
.. ......+... +++++.+ .+..++.....|...++. +++||+||||||++|+.|+ +
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~---i 249 (561)
T PRK13748 174 DRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHG-EARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPP---I 249 (561)
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCC---C
Confidence 00 0111223444 7899987 666666544455555553 6999999999999998887 5
Q ss_pred CCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHH
Q 013914 135 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY 214 (434)
Q Consensus 135 ~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~ 214 (434)
+|.+...+++ +.+ ... ....+++++|||+|++|+|+|..|.+.|.+|+++.+. .+++. +++++.+.+.+.
T Consensus 250 ~g~~~~~~~~--~~~-~~~-----~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~-~~l~~-~d~~~~~~l~~~ 319 (561)
T PRK13748 250 PGLKETPYWT--STE-ALV-----SDTIPERLAVIGSSVVALELAQAFARLGSKVTILARS-TLFFR-EDPAIGEAVTAA 319 (561)
T ss_pred CCCCccceEc--cHH-Hhh-----cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-ccccc-cCHHHHHHHHHH
Confidence 6654322322 221 111 1124789999999999999999999999999999985 45555 799999999999
Q ss_pred HHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-cCCcEEeCCCCCCCCC
Q 013914 215 YANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSAD 290 (434)
Q Consensus 215 l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~ 290 (434)
+++.||++++++.+++++.+ ++. ..+.+.++ ++++|.|++|+|++||++++ ..++.. ++|+|.||+++||++|
T Consensus 320 l~~~gI~i~~~~~v~~i~~~-~~~-~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~ 396 (561)
T PRK13748 320 FRAEGIEVLEHTQASQVAHV-DGE-FVLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVP 396 (561)
T ss_pred HHHCCCEEEcCCEEEEEEec-CCE-EEEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCC
Confidence 99999999999999999863 332 34555555 79999999999999999864 346666 5788999999999999
Q ss_pred cEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC------C
Q 013914 291 DVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------G 364 (434)
Q Consensus 291 ~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~ 364 (434)
||||+|||++.+ .....|..+|+.|+.||++.. ...++...|...+..+ .+..+|.++ |
T Consensus 397 ~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~---~~~~~~~~p~~~~~~p--~~a~vGlte~~a~~~g 461 (561)
T PRK13748 397 HIYAAGDCTDQP----------QFVYVAAAAGTRAAINMTGGD---AALDLTAMPAVVFTDP--QVATVGYSEAEAHHDG 461 (561)
T ss_pred CEEEeeecCCCc----------cchhHHHHHHHHHHHHHcCCC---cccCCCCCCeEEEccC--CceeeeCCHHHHHHcC
Confidence 999999999865 345568889999999998653 2245566776555444 455557664 2
Q ss_pred CEE-----EEcCCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 365 DTV-----LFGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 365 ~~~-----~~~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
..+ .+.+..+. ...++|+|+++ ++++|||+|++|+++.++ +.++.+|++++|++|+..+.-+.++|++
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e 540 (561)
T PRK13748 462 IETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVE 540 (561)
T ss_pred CCeEEEEEecccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcccccCCchHH
Confidence 111 11221111 23577899887 479999999999999885 9999999999999977766666666553
No 29
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.1e-47 Score=374.57 Aligned_cols=392 Identities=19% Similarity=0.227 Sum_probs=279.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCccCccccCCCCC---------CCCC--------Cc
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEGT---------ARLP--------GF 66 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~~---------~~~~--------~~ 66 (434)
+|+|||||+||++||..|++.|.+ |+|||++... ....|.++|.++..... ..++ .+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~---V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 78 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKN---VTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDW 78 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCc---EEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCH
Confidence 799999999999999999999987 9999998643 22335555555432100 0010 00
Q ss_pred ccccCC------CCCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCC-cEEEcceEEEecCCCcccccCCCCCCCCC
Q 013914 67 HVCVGS------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGSTVLRLTDFGVEGADA 139 (434)
Q Consensus 67 ~~~~~~------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~lvlAtG~~~~~~~~~~~~g~~~ 139 (434)
...... .........+++.+++++.+ ++..++.....+...++ .+++||+||||||++|+.++ +++.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p---~~~~~~ 154 (458)
T PRK06912 79 KQMQARKSQIVTQLVQGIQYLMKKNKIKVIQG-KASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELP---FAPFDG 154 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCC---CCCCCC
Confidence 000000 00011123344568999887 55545433333444444 36999999999999998776 344443
Q ss_pred CCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcC
Q 013914 140 KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKG 219 (434)
Q Consensus 140 ~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~G 219 (434)
..+++. .++..+.+ .+++++|||+|++|+|+|..+.+.|.+|+++++.+++++. +++++.+.+.+.+++.|
T Consensus 155 ~~v~~~---~~~~~~~~-----~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~-~d~e~~~~l~~~L~~~G 225 (458)
T PRK06912 155 KWIINS---KHAMSLPS-----IPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG-EDEDIAHILREKLENDG 225 (458)
T ss_pred CeEEcc---hHHhCccc-----cCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc-ccHHHHHHHHHHHHHCC
Confidence 445443 23322211 4789999999999999999999999999999999999886 68999999999999999
Q ss_pred cEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCccChhhh---hccccccCCcEEeCCCCCCCCCcEEE
Q 013914 220 IKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLF---KGQVAENKGGIETDDFFKTSADDVYA 294 (434)
Q Consensus 220 V~~~~~~~v~~i~~~~~g~v~~v~~~~g--~~~~~D~vi~a~G~~p~~~~~---~~~~~~~~g~i~vd~~~~t~~~~iya 294 (434)
|++++++++++++. ++....+.. +| +++++|.+++|+|++|+++.+ ..++...++++.||+++||++|||||
T Consensus 226 I~i~~~~~V~~i~~--~~~~v~~~~-~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~gi~Vd~~~~ts~~~VyA 302 (458)
T PRK06912 226 VKIFTGAALKGLNS--YKKQALFEY-EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGISVNEHMQTNVPHIYA 302 (458)
T ss_pred CEEEECCEEEEEEE--cCCEEEEEE-CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCCEEeCCCeecCCCCEEE
Confidence 99999999999976 232223333 34 368999999999999999754 33555544569999999999999999
Q ss_pred ecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC------CCEEE
Q 013914 295 VGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GDTVL 368 (434)
Q Consensus 295 ~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~~~ 368 (434)
+|||+..+ +.+..|..+|+.|+.++.+... ...+..+|..+++.+++..+ |.++ +..+.
T Consensus 303 ~GD~~~~~----------~la~~A~~~g~~aa~~~~g~~~---~~~~~~~p~~v~~~p~~a~v--Glte~~a~~~g~~~~ 367 (458)
T PRK06912 303 CGDVIGGI----------QLAHVAFHEGTTAALHASGEDV---KVNYHAVPRCIYTSPEIASV--GLTEKQAREQYGDIR 367 (458)
T ss_pred EeecCCCc----------ccHHHHHHHHHHHHHHHcCCCC---CCCcCCCCeEEecCchhEEe--eCCHHHHHHCCCCeE
Confidence 99999743 5677899999999999986431 24467788877655555544 6654 21122
Q ss_pred Ec-----CCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 369 FG-----DNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 369 ~~-----~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
.. ...+. ..+.+|+|+++ ++++|||+|++|+++.++ +.++.||++++|++|+..+..+.++|.+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 442 (458)
T PRK06912 368 IGEFPFTANGKALIIGEQTGKVKVIVEPKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIMEDFIAAHPTLSE 442 (458)
T ss_pred EEEEecCcchhHhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCCHHH
Confidence 21 11111 23567888887 579999999999999885 9999999999999988888777887765
No 30
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=3.3e-47 Score=369.56 Aligned_cols=393 Identities=19% Similarity=0.245 Sum_probs=282.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCccCccccCCCCC----CCCCCcccc-------
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEGT----ARLPGFHVC------- 69 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~------- 69 (434)
++||++|||+|++|..||.. ..|.+ |+|||++... ....|.++|.++..... .....+...
T Consensus 1 ~~yD~vvIG~G~~g~~aa~~--~~g~~---V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d 75 (452)
T TIGR03452 1 RHYDLIIIGTGSGNSIPDPR--FADKR---IAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVR 75 (452)
T ss_pred CCcCEEEECCCHHHHHHHHH--HCCCe---EEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccC
Confidence 36999999999999988654 45877 9999997542 23446666665533211 000111100
Q ss_pred ----cCC--C-CCC---C-ChhhH---hhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCC
Q 013914 70 ----VGS--G-GER---L-LPEWY---KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVE 135 (434)
Q Consensus 70 ----~~~--~-~~~---~-~~~~~---~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~ 135 (434)
... . ... . ..... ++.|++++.+..++. +.++|.+.+++++.||+||||||++|+.|+. .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~---~~~~V~~~~g~~~~~d~lIiATGs~p~~p~~---~ 149 (452)
T TIGR03452 76 WPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV---GPRTLRTGDGEEITGDQIVIAAGSRPYIPPA---I 149 (452)
T ss_pred HHHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe---cCCEEEECCCcEEEeCEEEEEECCCCCCCCC---C
Confidence 000 0 000 0 01111 226899999866554 6778888778789999999999999987763 2
Q ss_pred CCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHH
Q 013914 136 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY 215 (434)
Q Consensus 136 g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l 215 (434)
+.. ++ .+.+..++..+.+ .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+
T Consensus 150 ~~~--~~-~~~~~~~~~~l~~-----~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~~~~l~~~~ 220 (452)
T TIGR03452 150 ADS--GV-RYHTNEDIMRLPE-----LPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH-LDEDISDRFTEIA 220 (452)
T ss_pred CCC--CC-EEEcHHHHHhhhh-----cCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-cCHHHHHHHHHHH
Confidence 211 22 2345566655432 3789999999999999999999999999999999988875 7999988887755
Q ss_pred HhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhh---ccccc-cCCcEEeCCCCCCCCCc
Q 013914 216 ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK---GQVAE-NKGGIETDDFFKTSADD 291 (434)
Q Consensus 216 ~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~---~~~~~-~~g~i~vd~~~~t~~~~ 291 (434)
+ .||++++++++.+++.++++ ..+.+.+|+++++|.+++|+|++||++++. .++.. ++|+|.||+++||++|+
T Consensus 221 ~-~gI~i~~~~~V~~i~~~~~~--v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~ 297 (452)
T TIGR03452 221 K-KKWDIRLGRNVTAVEQDGDG--VTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARG 297 (452)
T ss_pred h-cCCEEEeCCEEEEEEEcCCe--EEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCCCC
Confidence 4 68999999999999863333 456777888999999999999999998753 35666 67889999999999999
Q ss_pred EEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC------CC
Q 013914 292 VYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GD 365 (434)
Q Consensus 292 iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~ 365 (434)
|||+|||+..+ +....|.+||+.+++||++.... ....+..+|+++++.+++..+ |.++ |.
T Consensus 298 IyA~GD~~~~~----------~l~~~A~~~g~~~a~ni~~~~~~-~~~~~~~~p~~i~t~p~ia~v--Glte~ea~~~g~ 364 (452)
T TIGR03452 298 VWALGDVSSPY----------QLKHVANAEARVVKHNLLHPNDL-RKMPHDFVPSAVFTHPQIATV--GLTEQEAREAGH 364 (452)
T ss_pred EEEeecccCcc----------cChhHHHHHHHHHHHHhcCCCCc-ccCCCCCCCeEEECCCCeeee--eCCHHHHHhcCC
Confidence 99999999854 34567889999999999875311 125667789887765655544 7654 22
Q ss_pred EEEE-----cCCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhh-hccCCCccc
Q 013914 366 TVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVL-KNEGLSFAS 432 (434)
Q Consensus 366 ~~~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l-~~~~~~~~~ 432 (434)
.+.. ....+. ..+.+|+|+++ ++++|||+|++|+++.++ +.++.||++++|++|+..+ ..+.++|++
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e 443 (452)
T TIGR03452 365 DITVKIQNYGDVAYGWAMEDTTGFCKLIADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARKQYWIHPALPE 443 (452)
T ss_pred CeEEEEecCCchhhHhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCcccCCchHH
Confidence 1211 111111 24567898887 579999999999999885 9999999999999987765 345666654
No 31
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=2e-47 Score=371.43 Aligned_cols=393 Identities=17% Similarity=0.194 Sum_probs=277.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC-C---CC-CCccCccccCCCCCCCCCCcccccC------C
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA-P---YE-RPALSKAYLFPEGTARLPGFHVCVG------S 72 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~-~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~------~ 72 (434)
++|||+||||||||++||..|+++|.+ |+|||+++.. + .+ .|..++.++..... ...+..... .
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~---V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~--~~~~~~~~~~~~~~~~ 76 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKK---VALVEESKAMYGGTCINIGCIPTKTLLVAAEK--NLSFEQVMATKNTVTS 76 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCE---EEEEecCCcccceeeecCccccchHhhhhhhc--CCCHHHHHHHHHHHHH
Confidence 479999999999999999999999987 9999998632 1 11 12223333322111 001110000 0
Q ss_pred CCCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccC---CcEEEcceEEEecCCCcccccCCCCCCCC-CCCeEEecCH
Q 013914 73 GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT---GLIFKYQILVIATGSTVLRLTDFGVEGAD-AKNIFYLREI 148 (434)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~---~~~~~~d~lvlAtG~~~~~~~~~~~~g~~-~~~v~~~~~~ 148 (434)
.......+.+.+.+++++.+. ... .+.+++.+.+ ..++.||+||||||++|+.|+ ++|.+ ..++++..
T Consensus 77 ~~~~~~~~~~~~~gV~~~~g~-~~~--~~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~---i~G~~~~~~v~~~~-- 148 (438)
T PRK07251 77 RLRGKNYAMLAGSGVDLYDAE-AHF--VSNKVIEVQAGDEKIELTAETIVINTGAVSNVLP---IPGLADSKHVYDST-- 148 (438)
T ss_pred HHHHHHHHHHHhCCCEEEEEE-EEE--ccCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCC---CCCcCCCCcEEchH--
Confidence 000112244566789998874 322 3466665543 246999999999999998887 46642 34555433
Q ss_pred HHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeE
Q 013914 149 DDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVA 228 (434)
Q Consensus 149 ~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v 228 (434)
++..+. . .+++++|||+|++|+|+|..+++.|.+|+++++.+++++. +++++.+.+.+.+++.||++++++++
T Consensus 149 -~~~~~~----~-~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~GI~i~~~~~V 221 (438)
T PRK07251 149 -GIQSLE----T-LPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR-EEPSVAALAKQYMEEDGITFLLNAHT 221 (438)
T ss_pred -HHhcch----h-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC-CCHHHHHHHHHHHHHcCCEEEcCCEE
Confidence 333221 1 4789999999999999999999999999999999999887 68999999999999999999999999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhh---ccccc-cCCcEEeCCCCCCCCCcEEEeccccccccc
Q 013914 229 VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK---GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMK 304 (434)
Q Consensus 229 ~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~---~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~ 304 (434)
++++.+ ++. ..+. .+|+++++|.+++|+|++|+++.+. .++.. ++|++.||+++||++|||||+|||++.+.
T Consensus 222 ~~i~~~-~~~-v~v~-~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~IyaiGD~~~~~~- 297 (438)
T PRK07251 222 TEVKND-GDQ-VLVV-TEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDVNGGPQ- 297 (438)
T ss_pred EEEEec-CCE-EEEE-ECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc-
Confidence 999862 232 2333 4567899999999999999987643 34444 56889999999999999999999997543
Q ss_pred ccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC------CCEEE-----EcCCC
Q 013914 305 LYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GDTVL-----FGDND 373 (434)
Q Consensus 305 ~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~~~-----~~~~~ 373 (434)
....|..+|+.++.++++... .....+..+|+..+. +..+..+|.++ |..+. +...+
T Consensus 298 ---------~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~--~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~ 365 (438)
T PRK07251 298 ---------FTYISLDDFRIVFGYLTGDGS-YTLEDRGNVPTTMFI--TPPLSQVGLTEKEAKEAGLPYAVKELLVAAMP 365 (438)
T ss_pred ---------cHhHHHHHHHHHHHHHcCCCC-ccccccCCCCEEEEC--CCceEeeeCCHHHHHhcCCCeEEEEEECCcch
Confidence 345677799999999886532 112345567876554 44555557654 21111 12112
Q ss_pred cc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 374 LA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 374 ~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
+. ...++|+|+++ ++++|||+|++|++++++ +.++.||++++|++|+.....+.+++++
T Consensus 366 ~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 430 (438)
T PRK07251 366 RAHVNNDLRGAFKVVVNTETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFKKQIFTHPTMAE 430 (438)
T ss_pred hhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHH
Confidence 11 23456888887 579999999999999885 9999999999999977665556666543
No 32
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=5.6e-47 Score=376.08 Aligned_cols=398 Identities=20% Similarity=0.265 Sum_probs=281.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC--CC---CCCCCCccCccccCCCCC----CC---CCCcccc---
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE--AV---APYERPALSKAYLFPEGT----AR---LPGFHVC--- 69 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~--~~---~~~~~~~~~~~~~~~~~~----~~---~~~~~~~--- 69 (434)
+|||+|||+|++|+.||..++++|.+ |+|||++ .. +....|.++|.++..... .+ +..+...
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~k---V~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~ 192 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLK---VIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNA 192 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeecc
Confidence 68999999999999999999999998 9999975 22 123345666665543311 00 0111110
Q ss_pred --------------c-CC-C-C---------------CCCChhhHhhc-------CcEEEcCCeeEEEECCCCEEEc-cC
Q 013914 70 --------------V-GS-G-G---------------ERLLPEWYKEK-------GIELILSTEIVRADIASKTLLS-AT 109 (434)
Q Consensus 70 --------------~-~~-~-~---------------~~~~~~~~~~~-------~v~~~~~~~v~~i~~~~~~v~~-~~ 109 (434)
. .. . . .......++.. +++++.+...+ .+.++|.. .+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f---~~~~~v~v~~~ 269 (659)
T PTZ00153 193 FKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHI---VDKNTIKSEKS 269 (659)
T ss_pred ccccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEE---ecCCeEEEccC
Confidence 0 00 0 0 00111222333 36777763322 14555544 35
Q ss_pred CcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeE
Q 013914 110 GLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDV 189 (434)
Q Consensus 110 ~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v 189 (434)
++++.||+||||||++|+.|+. .+.+...++++ +++..+.. .+++++|||+|++|+|+|..|.+.|.+|
T Consensus 270 g~~i~ad~lIIATGS~P~~P~~---~~~~~~~V~ts---~d~~~l~~-----lpk~VvIVGgG~iGvE~A~~l~~~G~eV 338 (659)
T PTZ00153 270 GKEFKVKNIIIATGSTPNIPDN---IEVDQKSVFTS---DTAVKLEG-----LQNYMGIVGMGIIGLEFMDIYTALGSEV 338 (659)
T ss_pred CEEEECCEEEEcCCCCCCCCCC---CCCCCCcEEeh---HHhhhhhh-----cCCceEEECCCHHHHHHHHHHHhCCCeE
Confidence 6689999999999999988763 34444556654 34433321 3789999999999999999999999999
Q ss_pred EEEccCCccCCccCCHHHHHHHHHHH-HhcCcEEEcCCeEEEEEecCCCcEEEEEeCC-------C--------cEEECC
Q 013914 190 SMVYPEPWCMPRLFTADIAAFYEGYY-ANKGIKIIKGTVAVGFTTNADGEVKEVKLKD-------G--------RTLEAD 253 (434)
Q Consensus 190 ~lv~~~~~~~~~~~~~~~~~~~~~~l-~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~-------g--------~~~~~D 253 (434)
+++++.+++++. +++++.+.+.+.+ ++.||++++++.|.+++..+++....+.+.+ + +++++|
T Consensus 339 TLIe~~~~ll~~-~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD 417 (659)
T PTZ00153 339 VSFEYSPQLLPL-LDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVD 417 (659)
T ss_pred EEEeccCccccc-CCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcC
Confidence 999999999986 7999999998875 6799999999999999864333323343321 1 379999
Q ss_pred EEEEcccCccChhhh---hccccccCCcEEeCCCCCCC------CCcEEEecccccccccccCcceecccHHHHHHHHHH
Q 013914 254 IVVVGVGGRPLISLF---KGQVAENKGGIETDDFFKTS------ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQ 324 (434)
Q Consensus 254 ~vi~a~G~~p~~~~~---~~~~~~~~g~i~vd~~~~t~------~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~ 324 (434)
.|++|+|++||++.+ ..++..++|+|.||++|||+ +|+|||+|||++.+ .+...|..||+.
T Consensus 418 ~VlvAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~----------~La~~A~~qg~~ 487 (659)
T PTZ00153 418 SCLVATGRKPNTNNLGLDKLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQ----------MLAHTASHQALK 487 (659)
T ss_pred EEEEEECcccCCccCCchhcCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEecCCCc----------cCHHHHHHHHHH
Confidence 999999999999875 33555566889999999996 69999999998653 466788999999
Q ss_pred HHHHHhccCCC----------CcccCCCCCCeeEEeccCceeEEeecCCCCE-------------EEEcCCCcc------
Q 013914 325 AVKTIMATEGG----------KTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT-------------VLFGDNDLA------ 375 (434)
Q Consensus 325 aa~~i~~~~~~----------~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~-------------~~~~~~~~~------ 375 (434)
+++||++.... .....|..+|...++.|+++.+ |+++.+. ..+....+.
T Consensus 488 aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~~ift~PeiA~V--GlTE~eA~~~g~~~~v~v~~~~~~~~~ra~~~~~~ 565 (659)
T PTZ00153 488 VVDWIEGKGKENVNINVENWASKPIIYKNIPSVCYTTPELAFI--GLTEKEAKELYPPDNVGVEISFYKANSKVLCENNI 565 (659)
T ss_pred HHHHHcCCCccccccccccccccccccCcCCEEEECcCceEEe--eCCHHHHHhcCCCcceEEEEEEecccchhhhcccc
Confidence 99999875210 1235567788877777766655 6654210 112111111
Q ss_pred -------------------cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 376 -------------------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 376 -------------------~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
...++|+|+++ ++++|||+|++|+++.++ +.++.||++++|++|+..+..+.+++.+
T Consensus 566 ~~p~~~~~~~y~~g~~~~~~~~~G~vKli~d~~t~rILGa~ivG~~A~elI~~~a~aI~~~~tv~dl~~~~~~hPT~sE 644 (659)
T PTZ00153 566 SFPNNSKNNSYNKGKYNTVDNTEGMVKIVYLKDTKEILGMFIVGSYASILIHEGVLAINLKLSVKDLAHMVHSHPTISE 644 (659)
T ss_pred ccccccccccccccccccccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCChHH
Confidence 01567888877 579999999999999885 9999999999999988877777776654
No 33
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=3.1e-47 Score=372.75 Aligned_cols=394 Identities=18% Similarity=0.152 Sum_probs=275.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC----CCCCCccCccccCCCCC----CCCC--Cccccc-CC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA----PYERPALSKAYLFPEGT----ARLP--GFHVCV-GS 72 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~----~~~~~~~~~~~~~~~~~----~~~~--~~~~~~-~~ 72 (434)
.++|++|||+|+||+++|..|+++|.+ |++||+++.. ....|.+++.++..... ...+ ++.... ..
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~---v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~ 91 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGAR---VTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSI 91 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCe---EEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCcc
Confidence 369999999999999999999999987 9999997432 12234445544322100 0001 111000 00
Q ss_pred C--------------C-CCCChhhHhhc-CcEEEcCCeeEEEECCCCEEEccCCc--EEEcceEEEecCCCcccccCCCC
Q 013914 73 G--------------G-ERLLPEWYKEK-GIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVLRLTDFGV 134 (434)
Q Consensus 73 ~--------------~-~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~lvlAtG~~~~~~~~~~~ 134 (434)
. . .......++.. +++++.+. ..-++...-.|...++. ++.||+||||||++|+.|+ +
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~-a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~---i 167 (479)
T PRK14727 92 DRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGY-ARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPP---I 167 (479)
T ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEE-EEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCC---C
Confidence 0 0 00122233333 78888874 33333322234445553 6999999999999998887 5
Q ss_pred CCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHH
Q 013914 135 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY 214 (434)
Q Consensus 135 ~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~ 214 (434)
+|.+....++ + .+... . ...+++++|||+|++|+|+|..|.+.|.+|+++.+. .+++. +++++.+.+.+.
T Consensus 168 ~G~~~~~~~~--~-~~~l~--~---~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l~~-~d~~~~~~l~~~ 237 (479)
T PRK14727 168 PGLMDTPYWT--S-TEALF--S---DELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLLFR-EDPLLGETLTAC 237 (479)
T ss_pred CCcCccceec--c-hHHhc--c---ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCCCc-chHHHHHHHHHH
Confidence 6654333332 1 12111 1 114789999999999999999999999999999875 56665 799999999999
Q ss_pred HHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-cCCcEEeCCCCCCCCC
Q 013914 215 YANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSAD 290 (434)
Q Consensus 215 l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~ 290 (434)
+++.||+++++++++++..++++ ..+.+.++ ++++|.|++|+|++||++++ ..++.. .+|+|.||+++||++|
T Consensus 238 L~~~GV~i~~~~~V~~i~~~~~~--~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~ 314 (479)
T PRK14727 238 FEKEGIEVLNNTQASLVEHDDNG--FVLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAP 314 (479)
T ss_pred HHhCCCEEEcCcEEEEEEEeCCE--EEEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeecCCC
Confidence 99999999999999999863322 34555555 69999999999999999854 235665 5788999999999999
Q ss_pred cEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCCC------
Q 013914 291 DVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG------ 364 (434)
Q Consensus 291 ~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~------ 364 (434)
+|||+|||++.+ .....|..+|+.||.||++... ..++...|...+..++ +..+|.++.
T Consensus 315 ~IyA~GD~~~~~----------~~~~~A~~~G~~aa~~i~g~~~---~~~~~~~p~~~~~~p~--ia~vGlte~~a~~~g 379 (479)
T PRK14727 315 DIYAAGDCSDLP----------QFVYVAAAAGSRAGINMTGGNA---TLDLSAMPAVIFTDPQ--VATVGLSEAKAHLSG 379 (479)
T ss_pred CEEEeeecCCcc----------hhhhHHHHHHHHHHHHHcCCCc---ccccccCCcEEEecCc--eeeeeCCHHHHHHcC
Confidence 999999999765 3456788899999999987532 2455667776655454 455576642
Q ss_pred CEE-----EEcCCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 365 DTV-----LFGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 365 ~~~-----~~~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
..+ .+.+..+. ...+.|+|+++ ++++|||+|++|+++.++ +.++.||++++|++||..+.-+.+++.+
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E 458 (479)
T PRK14727 380 IETISRVLTMENVPRALANFETDGFIKLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQLFPYLTMVE 458 (479)
T ss_pred CceEEEEEEcccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCCccCCChHH
Confidence 111 11221111 23567899887 579999999999999885 9999999999999977766666666543
No 34
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=4.9e-47 Score=369.92 Aligned_cols=393 Identities=19% Similarity=0.177 Sum_probs=277.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC---------C---CCCCCCccCccccCCCCC----CCCCCccc
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA---------V---APYERPALSKAYLFPEGT----ARLPGFHV 68 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~---------~---~~~~~~~~~~~~~~~~~~----~~~~~~~~ 68 (434)
+||+||||+|+||+.+|..+++.|.+ |++||+.. . +....|.++|.++..... .....+..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~---v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~ 78 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAK---VMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGW 78 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCc
Confidence 58999999999999999999999987 99999731 1 122234555554432211 00011111
Q ss_pred ccCC----C--------------CCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEcc--CC--cEEEcceEEEecCCCc
Q 013914 69 CVGS----G--------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSA--TG--LIFKYQILVIATGSTV 126 (434)
Q Consensus 69 ~~~~----~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~--~~--~~~~~d~lvlAtG~~~ 126 (434)
.... . ........++..+++++.+.. .-++ .+++.+. ++ .+++||+||||||++|
T Consensus 79 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a-~f~~--~~~v~v~~~~g~~~~~~~d~lVIATGs~p 155 (484)
T TIGR01438 79 NVEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYA-EFVD--KHRIKATNKKGKEKIYSAERFLIATGERP 155 (484)
T ss_pred ccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEE-EEcC--CCEEEEeccCCCceEEEeCEEEEecCCCC
Confidence 0000 0 001222345667999999844 3333 4555442 33 3699999999999999
Q ss_pred ccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHH
Q 013914 127 LRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTAD 206 (434)
Q Consensus 127 ~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~ 206 (434)
+.|+ +||.+. ..+ +.+++..+. . .+++++|||+|++|+|+|..|.+.|.+|+++.+ +.+++. ++++
T Consensus 156 ~~p~---ipG~~~-~~~---~~~~~~~~~----~-~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~~-~d~~ 221 (484)
T TIGR01438 156 RYPG---IPGAKE-LCI---TSDDLFSLP----Y-CPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRG-FDQD 221 (484)
T ss_pred CCCC---CCCccc-eee---cHHHhhccc----c-cCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-cccccc-cCHH
Confidence 8887 566432 122 333333221 1 468999999999999999999999999999987 466665 7999
Q ss_pred HHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC---cEEECCEEEEcccCccChhhh---hcccccc--CCc
Q 013914 207 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG---RTLEADIVVVGVGGRPLISLF---KGQVAEN--KGG 278 (434)
Q Consensus 207 ~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g---~~~~~D~vi~a~G~~p~~~~~---~~~~~~~--~g~ 278 (434)
+.+.+.+.|++.||++++++.+.++...+ +. ..+++.++ +++++|.|++|+|++||++++ ..++..+ +|+
T Consensus 222 ~~~~l~~~L~~~gV~i~~~~~v~~v~~~~-~~-~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~ 299 (484)
T TIGR01438 222 CANKVGEHMEEHGVKFKRQFVPIKVEQIE-AK-VKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGK 299 (484)
T ss_pred HHHHHHHHHHHcCCEEEeCceEEEEEEcC-Ce-EEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCe
Confidence 99999999999999999999999987632 22 34666555 379999999999999999864 3355552 488
Q ss_pred EEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEE
Q 013914 279 IETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQF 358 (434)
Q Consensus 279 i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 358 (434)
|.||+++||++|+|||+|||+.... ..+..|.+||+.+++||++... ....|..+|+..++.|+++.+
T Consensus 300 I~Vd~~~~Ts~p~IyA~GDv~~~~~---------~l~~~A~~~g~~aa~~i~~~~~--~~~~~~~~p~~i~~~p~ia~v- 367 (484)
T TIGR01438 300 IPADEEEQTNVPYIYAVGDILEDKQ---------ELTPVAIQAGRLLAQRLFSGST--VICDYENVPTTVFTPLEYGAC- 367 (484)
T ss_pred EecCCCcccCCCCEEEEEEecCCCc---------cchHHHHHHHHHHHHHHhcCCC--cccccccCCeEEeCCCceeee-
Confidence 9999999999999999999996322 3567789999999999987532 124667788887766655544
Q ss_pred eecCCCC--------EEEEc--CCCcc------cC--CCcEEEEEE---eCCEEEEEEEecCCHHHH-HHHHHHHHcCCC
Q 013914 359 YGDNVGD--------TVLFG--DNDLA------SA--THKFGTYWI---KDGKVVGVFLESGTPEEN-KAIAKVARVQPS 416 (434)
Q Consensus 359 ~g~~~~~--------~~~~~--~~~~~------~~--~~~~~~~~~---~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~ 416 (434)
|.++.+ .+... ...+. .. ...|+|+++ ++++|||+|++|+++.++ +.++.||++++|
T Consensus 368 -Glte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~~t 446 (484)
T TIGR01438 368 -GLSEEKAVEKFGEENIEVFHSYFWPLEWTIPSRDNSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCGLT 446 (484)
T ss_pred -cCCHHHHHHhcCCCcEEEEEeecchhhhHhhCCCccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcCCC
Confidence 655421 11111 11110 11 457888775 369999999999999885 999999999999
Q ss_pred CCChhhhhccCCCccc
Q 013914 417 VESLDVLKNEGLSFAS 432 (434)
Q Consensus 417 ~~~~~~l~~~~~~~~~ 432 (434)
++||..+-.+.++|.+
T Consensus 447 ~~dl~~~~~~hPt~sE 462 (484)
T TIGR01438 447 KKDLDNTIGIHPVCAE 462 (484)
T ss_pred HHHHhhhhcCCCChHH
Confidence 9988876666666654
No 35
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=5e-47 Score=371.23 Aligned_cols=397 Identities=22% Similarity=0.283 Sum_probs=278.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeC-------CCCCC--CC-CCccCccccCCCCC-CCC----CCcc
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISK-------EAVAP--YE-RPALSKAYLFPEGT-ARL----PGFH 67 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~-------~~~~~--~~-~~~~~~~~~~~~~~-~~~----~~~~ 67 (434)
++.||++|||||+||++||.++++.|.+ |+|||+ ....+ .+ .|.+++.++..... ... ..+.
T Consensus 2 ~~~~DviIIG~G~aG~~aA~~~~~~g~~---v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G 78 (475)
T PRK06327 2 SKQFDVVVIGAGPGGYVAAIRAAQLGLK---VACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHG 78 (475)
T ss_pred CcceeEEEECCCHHHHHHHHHHHhCCCe---EEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcC
Confidence 4579999999999999999999999987 999998 21111 11 12222322211100 000 0000
Q ss_pred cccCC---C--------------CCCCChhhHhhcCcEEEcCCeeEEEEC--CCCEEEcc--CCcEEEcceEEEecCCCc
Q 013914 68 VCVGS---G--------------GERLLPEWYKEKGIELILSTEIVRADI--ASKTLLSA--TGLIFKYQILVIATGSTV 126 (434)
Q Consensus 68 ~~~~~---~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~--~~~~v~~~--~~~~~~~d~lvlAtG~~~ 126 (434)
..... + ........++..+++++.+ .+..++. +.++|.+. ++++++||+||||||++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p 157 (475)
T PRK06327 79 IHVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKG-RGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEP 157 (475)
T ss_pred ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCC
Confidence 00000 0 0001223344568999987 4555543 24566653 345799999999999999
Q ss_pred ccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHH
Q 013914 127 LRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTAD 206 (434)
Q Consensus 127 ~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~ 206 (434)
+.++. ++ .+...+++. .+...+. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. ++++
T Consensus 158 ~~~p~--~~-~~~~~~~~~---~~~~~~~-----~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~ 225 (475)
T PRK06327 158 RHLPG--VP-FDNKIILDN---TGALNFT-----EVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA-ADEQ 225 (475)
T ss_pred CCCCC--CC-CCCceEECc---HHHhccc-----ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc-CCHH
Confidence 75543 22 222334322 2222221 14789999999999999999999999999999999998886 7899
Q ss_pred HHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC--C--cEEECCEEEEcccCccChhhh---hccccc-cCCc
Q 013914 207 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD--G--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGG 278 (434)
Q Consensus 207 ~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~--g--~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~ 278 (434)
+.+.+.+.+++.||+++++++|.+++.++++ ..+.+.+ | +++++|.+++|+|++|+++.+ ..++.. ++|+
T Consensus 226 ~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~--v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~ 303 (475)
T PRK06327 226 VAKEAAKAFTKQGLDIHLGVKIGEIKTGGKG--VSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGF 303 (475)
T ss_pred HHHHHHHHHHHcCcEEEeCcEEEEEEEcCCE--EEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCe
Confidence 9999999999999999999999999873332 3455443 3 469999999999999999854 234555 5788
Q ss_pred EEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEE
Q 013914 279 IETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQF 358 (434)
Q Consensus 279 i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 358 (434)
|.||+++||++|+|||+|||+..+ ..+..|..||+.||.||++... ...|..+|+.++..++++ .
T Consensus 304 i~vd~~~~Ts~~~VyA~GD~~~~~----------~~~~~A~~~G~~aa~~i~g~~~---~~~~~~~p~~~~~~pe~a--~ 368 (475)
T PRK06327 304 IPVDDHCRTNVPNVYAIGDVVRGP----------MLAHKAEEEGVAVAERIAGQKG---HIDYNTIPWVIYTSPEIA--W 368 (475)
T ss_pred EeECCCCccCCCCEEEEEeccCCc----------chHHHHHHHHHHHHHHHcCCCC---CCCCCCCCeEEeCCcceE--E
Confidence 999999999999999999999754 4577889999999999987532 146677888776555554 5
Q ss_pred eecCC------CCEEEEcC-----CCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChh
Q 013914 359 YGDNV------GDTVLFGD-----NDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLD 421 (434)
Q Consensus 359 ~g~~~------~~~~~~~~-----~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~ 421 (434)
+|.++ |..+..+. ..+. ....+|+|+++ ++++|||+|++|+++.++ +.++.||++++|++||.
T Consensus 369 vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~ 448 (475)
T PRK06327 369 VGKTEQQLKAEGVEYKAGKFPFMANGRALAMGEPDGFVKIIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIA 448 (475)
T ss_pred EeCCHHHHHHcCCCEEEEEEcccccchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHh
Confidence 57654 22122211 1111 24567898887 579999999999999885 99999999999999888
Q ss_pred hhhccCCCccc
Q 013914 422 VLKNEGLSFAS 432 (434)
Q Consensus 422 ~l~~~~~~~~~ 432 (434)
.+..+.++|.+
T Consensus 449 ~~~~~hPt~~e 459 (475)
T PRK06327 449 RICHAHPTLSE 459 (475)
T ss_pred cCCcCCCChHH
Confidence 87767777654
No 36
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1e-46 Score=369.20 Aligned_cols=395 Identities=23% Similarity=0.231 Sum_probs=274.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCccCccccCCCC----CCCCCCcccccCCC---
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEG----TARLPGFHVCVGSG--- 73 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--- 73 (434)
++|||||||||+||++||.+|++.|.+ |+|||++...+ ...|.+++.++.... ..+.+.+.......
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~ 78 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKK---VALIEKGPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKID 78 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccC
Confidence 469999999999999999999999987 99999954321 222334443332110 00011110000000
Q ss_pred --------------CCCCC-hhhHhhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCC
Q 013914 74 --------------GERLL-PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD 138 (434)
Q Consensus 74 --------------~~~~~-~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~ 138 (434)
..... ...++..+++++.+ .+..+ +.+++.+ +++++.||++|+|||+. .|+.+++....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~--~~~~v~v-~~~~~~~d~lIiATGs~--~p~ipg~~~~~ 152 (460)
T PRK06292 79 FKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKG-TARFV--DPNTVEV-NGERIEAKNIVIATGSR--VPPIPGVWLIL 152 (460)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEE-EEEEc--cCCEEEE-CcEEEEeCEEEEeCCCC--CCCCCCCcccC
Confidence 00011 22334457888776 34333 3345555 66789999999999999 33322222112
Q ss_pred CCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhc
Q 013914 139 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK 218 (434)
Q Consensus 139 ~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (434)
...++++ .+...+. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.
T Consensus 153 ~~~~~~~---~~~~~~~-----~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~~~~l~~~ 223 (460)
T PRK06292 153 GDRLLTS---DDAFELD-----KLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL-EDPEVSKQAQKILSKE 223 (460)
T ss_pred CCcEECc---hHHhCcc-----ccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-hhHHHHHHHHHHHhhc
Confidence 3344433 3332221 14789999999999999999999999999999999999885 7999999999999999
Q ss_pred CcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCccChhhh---hccccc-cCCcEEeCCCCCCCCCcE
Q 013914 219 GIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDV 292 (434)
Q Consensus 219 GV~~~~~~~v~~i~~~~~g~v~~v~~~~g--~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~i 292 (434)
|++++++++.+++..++.. ..+++.++ +++++|.+++|+|++||++.+ ..++.. ++|+|.||+++||++|+|
T Consensus 224 -I~i~~~~~v~~i~~~~~~~-v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~I 301 (460)
T PRK06292 224 -FKIKLGAKVTSVEKSGDEK-VEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGI 301 (460)
T ss_pred -cEEEcCCEEEEEEEcCCce-EEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCCCE
Confidence 9999999999998632211 23333334 479999999999999999853 345655 578899999999999999
Q ss_pred EEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC------CCE
Q 013914 293 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GDT 366 (434)
Q Consensus 293 ya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~ 366 (434)
||+|||++.+ ..+..|..||+.||.||++... ....+..+|+.+++.++++. +|.++ |..
T Consensus 302 yA~GD~~~~~----------~~~~~A~~qg~~aa~~i~~~~~--~~~~~~~~p~~~~~~~~~a~--vG~te~~a~~~g~~ 367 (460)
T PRK06292 302 YAAGDVNGKP----------PLLHEAADEGRIAAENAAGDVA--GGVRYHPIPSVVFTDPQIAS--VGLTEEELKAAGID 367 (460)
T ss_pred EEEEecCCCc----------cchhHHHHHHHHHHHHhcCCCC--CCcCCCCCCeEEECCCccEE--eECCHHHHHhcCCC
Confidence 9999999754 4567789999999999987421 12456678877766665554 47664 221
Q ss_pred EEE-----cCCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 367 VLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 367 ~~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
+.. ....+. ...++|+|+++ ++++|||+|++|+++.++ +.++.||++++|++|+..+.-+.++|.+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 444 (460)
T PRK06292 368 YVVGEVPFEAQGRARVMGKNDGFVKVYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLSE 444 (460)
T ss_pred eEEEEEecccchHHHhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHH
Confidence 211 111111 23577888887 469999999999999885 9999999999999988777666666654
No 37
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=2.8e-46 Score=366.42 Aligned_cols=395 Identities=19% Similarity=0.182 Sum_probs=275.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC----C----C----CCCCCccCccccCCCCC-----CCCCCc
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA----V----A----PYERPALSKAYLFPEGT-----ARLPGF 66 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~----~----~----~~~~~~~~~~~~~~~~~-----~~~~~~ 66 (434)
.+|||+||||||||++||.+|+++|.+ |+|||++. . . ....|.+++.++..... .....+
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~G~~---V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~ 80 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAHGKK---VALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMY 80 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCe---EEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcC
Confidence 469999999999999999999999987 99999732 1 0 11123333322211000 000000
Q ss_pred ccccC--C--------------CCCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccC---CcEEEcceEEEecCCCcc
Q 013914 67 HVCVG--S--------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT---GLIFKYQILVIATGSTVL 127 (434)
Q Consensus 67 ~~~~~--~--------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~---~~~~~~d~lvlAtG~~~~ 127 (434)
..... . .........++..+++++.+ .... .+.++|.+.+ +..++||+||||||+.|+
T Consensus 81 g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g-~a~~--~~~~~v~v~~~~~~~~i~~d~lIIATGs~p~ 157 (499)
T PTZ00052 81 GWKTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYING-LAKL--KDEHTVSYGDNSQEETITAKYILIATGGRPS 157 (499)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEE-EEEE--ccCCEEEEeeCCCceEEECCEEEEecCCCCC
Confidence 00000 0 00001112223357777776 3332 3456665532 347999999999999998
Q ss_pred cccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHH
Q 013914 128 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADI 207 (434)
Q Consensus 128 ~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~ 207 (434)
.|+. ++|.+. ..+ +..+...+. . .+++++|||+|++|+|+|..|.+.|.+|+++.+. .+++. +++++
T Consensus 158 ~p~~--i~G~~~-~~~---~~~~~~~~~----~-~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~~-~d~~~ 224 (499)
T PTZ00052 158 IPED--VPGAKE-YSI---TSDDIFSLS----K-DPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPLRG-FDRQC 224 (499)
T ss_pred CCCC--CCCccc-eee---cHHHHhhhh----c-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-ccccc-CCHHH
Confidence 7642 465432 122 333333221 1 4689999999999999999999999999999874 56654 89999
Q ss_pred HHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-cCCcEEeCC
Q 013914 208 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDD 283 (434)
Q Consensus 208 ~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~ 283 (434)
.+.+.+.|++.||++++++.+.++...+ +. ..+.+.+|+++++|.|++++|++||++++ ..++.. .+|++.+++
T Consensus 225 ~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~-~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~ 302 (499)
T PTZ00052 225 SEKVVEYMKEQGTLFLEGVVPINIEKMD-DK-IKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPN 302 (499)
T ss_pred HHHHHHHHHHcCCEEEcCCeEEEEEEcC-Ce-EEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCC
Confidence 9999999999999999999999998633 22 45777888889999999999999999876 335655 567777777
Q ss_pred CCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC
Q 013914 284 FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV 363 (434)
Q Consensus 284 ~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~ 363 (434)
. ||++|+|||+|||+.... ..+..|.+||+.+++||++... ....+..+|+.+++.|+++.+ |+++
T Consensus 303 ~-~Ts~p~IyAiGDv~~~~~---------~l~~~A~~~g~~aa~ni~g~~~--~~~~~~~~p~~ift~p~ia~v--Glte 368 (499)
T PTZ00052 303 D-CTNIPNIFAVGDVVEGRP---------ELTPVAIKAGILLARRLFKQSN--EFIDYTFIPTTIFTPIEYGAC--GYSS 368 (499)
T ss_pred C-cCCCCCEEEEEEecCCCc---------ccHHHHHHHHHHHHHHHhCCCC--CcCccccCCeEEecCCcceee--cCCH
Confidence 7 999999999999996321 4678899999999999987532 235667789888777766555 7553
Q ss_pred C--------CEEEEcC--C---C-----cc-------------cCCCcEEEEEE-e--CCEEEEEEEecCCHHHH-HHHH
Q 013914 364 G--------DTVLFGD--N---D-----LA-------------SATHKFGTYWI-K--DGKVVGVFLESGTPEEN-KAIA 408 (434)
Q Consensus 364 ~--------~~~~~~~--~---~-----~~-------------~~~~~~~~~~~-~--~~~ilG~~~~g~~~~~~-~~~~ 408 (434)
. ..+.... . . .. ..+.+|+|+++ + +++|||+|++|++++|+ +.++
T Consensus 369 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~~~ 448 (499)
T PTZ00052 369 EAAIAKYGEDDIEEYLQEFNTLEIAAVHREKHERARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFS 448 (499)
T ss_pred HHHHHhcCCCCEEEEEeecccchhhccccccccccccccccccccCCceEEEEEecCCCCEEEEEEEECCCHHHHHHHHH
Confidence 2 1111110 0 0 00 01467898876 2 69999999999999996 9999
Q ss_pred HHHHcCCCCCChhhhhccCCCcccc
Q 013914 409 KVARVQPSVESLDVLKNEGLSFASK 433 (434)
Q Consensus 409 ~~i~~~~~~~~~~~l~~~~~~~~~~ 433 (434)
.||++++|++||..+..+.+++++.
T Consensus 449 ~ai~~~~t~~~l~~~~~~hPt~sE~ 473 (499)
T PTZ00052 449 LALKLGAKKSDFDSMIGIHPTDAEV 473 (499)
T ss_pred HHHHCCCCHHHHhcccccCCCCchh
Confidence 9999999999888887777777654
No 38
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=7.1e-46 Score=363.67 Aligned_cols=396 Identities=23% Similarity=0.278 Sum_probs=278.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCccCccccCCCCC-CC---CCCcccccCCC----
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGT-AR---LPGFHVCVGSG---- 73 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~---- 73 (434)
.|||+|||||+||++||.+|+++|.+ |+|||++...+ ...|.+++.++..... .. ...+.......
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~---v~lie~~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 77 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLK---VALVEKEYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDW 77 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCH
Confidence 38999999999999999999999987 99999943321 1122233333322111 00 00000000000
Q ss_pred -------------CCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCC-cEEEcceEEEecCCCcccccCCCCC-CCC
Q 013914 74 -------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGSTVLRLTDFGVE-GAD 138 (434)
Q Consensus 74 -------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~lvlAtG~~~~~~~~~~~~-g~~ 138 (434)
........+++.+++++.+ .+..++.....+...++ .++.||++|+|||++|+.|+. + +.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~---~~~~~ 153 (461)
T TIGR01350 78 EKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKG-EAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLPG---PFDFD 153 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCC---CCCCC
Confidence 0001123345568999887 44444433333443343 479999999999999987763 3 222
Q ss_pred CCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhc
Q 013914 139 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK 218 (434)
Q Consensus 139 ~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (434)
...++ +..+...+.. .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++.
T Consensus 154 ~~~~~---~~~~~~~~~~-----~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~ 224 (461)
T TIGR01350 154 GEVVI---TSTGALNLKE-----VPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG-EDAEVSKVVAKALKKK 224 (461)
T ss_pred CceEE---cchHHhcccc-----CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC-CCHHHHHHHHHHHHHc
Confidence 22233 3334333211 4789999999999999999999999999999999998885 7899999999999999
Q ss_pred CcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCccChh--hh-hccccc-cCCcEEeCCCCCCCCCcE
Q 013914 219 GIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLIS--LF-KGQVAE-NKGGIETDDFFKTSADDV 292 (434)
Q Consensus 219 GV~~~~~~~v~~i~~~~~g~v~~v~~~~g--~~~~~D~vi~a~G~~p~~~--~~-~~~~~~-~~g~i~vd~~~~t~~~~i 292 (434)
||++++++++.+++.+ ++. ..+.+.+| +++++|.+++|+|++|+++ ++ ..++.. .+|+|.||+++||++|+|
T Consensus 225 gi~i~~~~~v~~i~~~-~~~-v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~I 302 (461)
T TIGR01350 225 GVKILTNTKVTAVEKN-DDQ-VVYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGI 302 (461)
T ss_pred CCEEEeCCEEEEEEEe-CCE-EEEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCE
Confidence 9999999999999863 333 34666667 4799999999999999998 33 335655 568899999999999999
Q ss_pred EEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC------CCE
Q 013914 293 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GDT 366 (434)
Q Consensus 293 ya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~ 366 (434)
||+|||+..+ ..+..|..+|+.+|.||.+.... ...+...|...+..++ +..+|.++ |..
T Consensus 303 yaiGD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~--~~~~~~~~~~~~~~~~--~a~vG~~~~~a~~~g~~ 368 (461)
T TIGR01350 303 YAIGDVIGGP----------MLAHVASHEGIVAAENIAGKEPA--PIDYDAVPSCIYTDPE--VASVGLTEEQAKEAGYD 368 (461)
T ss_pred EEeeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCC--CCCCCCCCeEEecCCc--eEEEeCCHHHHHhCCCC
Confidence 9999999753 46788999999999999875321 2345566766555444 45556653 221
Q ss_pred EEEc-----CCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 367 VLFG-----DNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 367 ~~~~-----~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
+... +..+. .....|+|+++ ++++|||+|++|+++.++ +.++.||++++|++|+..+..+.++|++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~g~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~P~~~e 445 (461)
T TIGR01350 369 VKIGKFPFAANGKALALGETDGFVKIIADKKTGEILGAHIIGPHATELISEAVLAMELELTVEELAKTIHPHPTLSE 445 (461)
T ss_pred eEEEEEeCccchHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCCHHH
Confidence 2111 11111 23567888877 479999999999998885 9999999999999998888777777764
No 39
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=100.00 E-value=7.7e-45 Score=352.67 Aligned_cols=383 Identities=19% Similarity=0.273 Sum_probs=291.7
Q ss_pred HHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCC-hhhHhhcCcEEEcCCeeEE
Q 013914 19 YAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLL-PEWYKEKGIELILSTEIVR 97 (434)
Q Consensus 19 ~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~v~~ 97 (434)
+||.+|++.+ +..+|+|||+++.+.|..+.+.... ..... .+. ...... ..++.+.+++++.+++|+.
T Consensus 1 saA~~l~~~~-~~~~Vtlid~~~~~~~~~~~l~~~~-~g~~~--~~~-------~~~~~~~~~~~~~~gv~~~~~~~V~~ 69 (427)
T TIGR03385 1 SAASRVRRLD-KESDIIVFEKTEDVSFANCGLPYVI-GGVID--DRN-------KLLAYTPEVFIKKRGIDVKTNHEVIE 69 (427)
T ss_pred CHHHHHHhhC-CCCcEEEEEcCCceeEEcCCCCeEe-ccccC--CHH-------HcccCCHHHHHHhcCCeEEecCEEEE
Confidence 4788898874 3567999999987655432221111 00000 000 001122 3455788999988889999
Q ss_pred EECCCCEEEccC---CcEEE--cceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCC
Q 013914 98 ADIASKTLLSAT---GLIFK--YQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGG 172 (434)
Q Consensus 98 i~~~~~~v~~~~---~~~~~--~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g 172 (434)
++++.+++.+.+ +.++. ||+||||||++|+.|+ ++|.+..++++.+++.++..+++.+....+++++|+|+|
T Consensus 70 id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~~~~---i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG 146 (427)
T TIGR03385 70 VNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPN---IEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGG 146 (427)
T ss_pred EECCCCEEEEEECCCCCEEecCCCEEEECCCCCCCCCC---CCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCC
Confidence 999998887653 34677 9999999999998877 577666778999999999888888865567999999999
Q ss_pred HHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEC
Q 013914 173 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEA 252 (434)
Q Consensus 173 ~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~ 252 (434)
++|+|+|..|.+.|.+|+++++.+.++...+++++.+.+.+.+++.||++++++.+.++.. ++.+ +.+.+|+++++
T Consensus 147 ~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~~~--v~~~~g~~i~~ 222 (427)
T TIGR03385 147 YIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEG--EERV--KVFTSGGVYQA 222 (427)
T ss_pred HHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEec--CCCE--EEEcCCCEEEe
Confidence 9999999999999999999999988854447899999999999999999999999999976 4433 55678889999
Q ss_pred CEEEEcccCccChhhhhc-cccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHh
Q 013914 253 DIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM 330 (434)
Q Consensus 253 D~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 330 (434)
|.+++|+|++|++++++. ++.. .+|+|.||+++||+.|+|||+|||+..+....+.+...+++..|.+||+.+|+||.
T Consensus 223 D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~ 302 (427)
T TIGR03385 223 DMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIA 302 (427)
T ss_pred CEEEECCCccCCHHHHHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhc
Confidence 999999999999988754 6666 56899999999999999999999998776555544445688899999999999998
Q ss_pred ccCCCCcccCCC-CCCeeEEeccCceeEEeecCCC------CEE---EEc--CCCc--ccCCCcEEEEEE--eCCEEEEE
Q 013914 331 ATEGGKTVTGYD-YLPYFYSRAFDLSWQFYGDNVG------DTV---LFG--DNDL--ASATHKFGTYWI--KDGKVVGV 394 (434)
Q Consensus 331 ~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~g~~~~------~~~---~~~--~~~~--~~~~~~~~~~~~--~~~~ilG~ 394 (434)
+.. ..|. ..+..+..+++..+..+|.++. ..+ .+. +... .....+|+|+++ ++++|||+
T Consensus 303 g~~-----~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~ 377 (427)
T TIGR03385 303 GND-----IEFKGVLGTNITKFFDLTIASTGVTENEAKKLNIDYKTVFVKAKTHANYYPGNSPLHLKLIYEKDTRRILGA 377 (427)
T ss_pred CCC-----CCCCCcceeeEEEEcCeEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCeEEEE
Confidence 752 3343 2234445566777888887652 111 111 1111 123456888887 47999999
Q ss_pred EEecCC-HHHH-HHHHHHHHcCCCCCChhhhh
Q 013914 395 FLESGT-PEEN-KAIAKVARVQPSVESLDVLK 424 (434)
Q Consensus 395 ~~~g~~-~~~~-~~~~~~i~~~~~~~~~~~l~ 424 (434)
|++|++ +.++ +.++.+|++++|++|+..+.
T Consensus 378 ~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~ 409 (427)
T TIGR03385 378 QAVGKEGADKRIDVLAAAIMAGLTVKDLFFFE 409 (427)
T ss_pred EEEccccHHHHHHHHHHHHHCCCCHHHHhhcc
Confidence 999998 8785 99999999999999776544
No 40
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=100.00 E-value=5.7e-45 Score=347.44 Aligned_cols=384 Identities=26% Similarity=0.398 Sum_probs=323.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
+.++||||.|+||..+..++.+......+|+++-.+++..|+|..++..+-.......+ .....+|+++
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi-----------~l~~~dwy~~ 71 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDI-----------SLNRNDWYEE 71 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHH-----------hccchhhHHH
Confidence 57899999999999999999985444557999999999999999888766544433322 2456789999
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCC
Q 013914 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNG 164 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~ 164 (434)
++++++.+..++.||++++.|+++.|.++.||+||+||||.|+.+| +||.+.++++.+++.+|...+.+.-+ ..+
T Consensus 72 ~~i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~P---iPG~~~~~v~~~R~i~D~~am~~~ar--~~~ 146 (793)
T COG1251 72 NGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILP---IPGSDLPGVFVYRTIDDVEAMLDCAR--NKK 146 (793)
T ss_pred cCcEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCccccccC---CCCCCCCCeeEEecHHHHHHHHHHHh--ccC
Confidence 9999999999999999999999999999999999999999999999 79999999999999999999988843 356
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL 244 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~ 244 (434)
+.+|||+|..|+|+|..|...|.++++++-.+.++.+.+|+.....|++.+++.|+++++++..+++.. ++++..+.+
T Consensus 147 ~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~ 224 (793)
T COG1251 147 KAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRF 224 (793)
T ss_pred CcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhc--CcceeeEee
Confidence 689999999999999999999999999999999998889999999999999999999999998888876 778889999
Q ss_pred CCCcEEECCEEEEcccCccChhhhhc-cccccCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHH
Q 013914 245 KDGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAE 323 (434)
Q Consensus 245 ~~g~~~~~D~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~ 323 (434)
+||+.+++|+|++|+|.+||.++... ++...+ +|.||++|||++|+|||+|+|+.+....+ .+++.+..|++
T Consensus 225 ~DG~~i~ad~VV~a~GIrPn~ela~~aGlavnr-GIvvnd~mqTsdpdIYAvGEcae~~g~~y------GLVaP~yeq~~ 297 (793)
T COG1251 225 ADGTEIPADLVVMAVGIRPNDELAKEAGLAVNR-GIVVNDYMQTSDPDIYAVGECAEHRGKVY------GLVAPLYEQAK 297 (793)
T ss_pred cCCCcccceeEEEecccccccHhHHhcCcCcCC-CeeecccccccCCCeeehhhHHHhcCccc------eehhHHHHHHH
Confidence 99999999999999999999999865 555544 89999999999999999999999765433 57888999999
Q ss_pred HHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC----CCEEEEcCCCcccCCCcEEEEEEeCCEEEEEEEecC
Q 013914 324 QAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV----GDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESG 399 (434)
Q Consensus 324 ~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~ 399 (434)
++|.++.+...+ ..-...++..-+..++.+.+.|... ...+.+-|.. ...|.|+.+++++|+|+.++|+
T Consensus 298 v~a~hl~~~~~~---~y~gsv~stkLKv~Gvdl~S~GD~~e~~~~~~iv~~D~~----~~iYKrlvL~dd~IvgavL~GD 370 (793)
T COG1251 298 VLADHLCGGEAE---AYEGSVTSTKLKVSGVDVFSAGDFQETEGAESIVFRDEQ----RGIYKKLVLKDDKIVGAVLYGD 370 (793)
T ss_pred HHHHHhccCccc---ccccccchhhhcccccceeeccchhhcCCCceEEEeccc----ccceeEEEEeCCeEEEEEEEee
Confidence 999999987543 1112333334455666666666543 2345555544 4678889999999999999995
Q ss_pred CHHHHHHHHHHHHcCCCCCChh
Q 013914 400 TPEENKAIAKVARVQPSVESLD 421 (434)
Q Consensus 400 ~~~~~~~~~~~i~~~~~~~~~~ 421 (434)
.++-..+-.+|.++.+++++.
T Consensus 371 -t~d~~~l~~li~~~~~~se~r 391 (793)
T COG1251 371 -TSDGGWLLDLILKGADISEIR 391 (793)
T ss_pred -cccchHHHHHHhcCCCccccc
Confidence 566778888999999887644
No 41
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=1.4e-45 Score=324.86 Aligned_cols=395 Identities=24% Similarity=0.306 Sum_probs=297.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC----CCCccCccccCCCCCCCC------CCcccccCC-
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY----ERPALSKAYLFPEGTARL------PGFHVCVGS- 72 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~----~~~~~~~~~~~~~~~~~~------~~~~~~~~~- 72 (434)
..||++|||+||+|..||..+++.|++ -+.+|++...+- ..|-+|+.+++....... .........
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlk---TacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~ 114 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLK---TACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSV 114 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcce---eEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccce
Confidence 359999999999999999999999998 688999765321 234557777655422110 000000000
Q ss_pred --C--------------CCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCC--cEEEcceEEEecCCCcccccCCCC
Q 013914 73 --G--------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVLRLTDFGV 134 (434)
Q Consensus 73 --~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lvlAtG~~~~~~~~~~~ 134 (434)
+ ...-....+++.+++++.+.. .-+++..-.+...|+ ..+.++++|+|||+.-. + +
T Consensus 115 ~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~g-sf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~--~---~ 188 (506)
T KOG1335|consen 115 SLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFG-SFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVT--P---F 188 (506)
T ss_pred ecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeE-eecCCceEEEeccCCCceEEeeeeEEEEeCCccC--C---C
Confidence 0 011223345667888888733 333343333444455 47899999999999532 2 2
Q ss_pred CCC--CCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHH
Q 013914 135 EGA--DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYE 212 (434)
Q Consensus 135 ~g~--~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~ 212 (434)
||. +.+.+.++.-...... -|++++|+|+|++|+|++..+.++|.+||+++-.+.+.+. +|.++++.++
T Consensus 189 PGI~IDekkIVSStgALsL~~--------vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~-mD~Eisk~~q 259 (506)
T KOG1335|consen 189 PGITIDEKKIVSSTGALSLKE--------VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV-MDGEISKAFQ 259 (506)
T ss_pred CCeEecCceEEecCCccchhh--------CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc-cCHHHHHHHH
Confidence 342 4455665544333333 4899999999999999999999999999999999999987 8999999999
Q ss_pred HHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC---C--cEEECCEEEEcccCccChhhh---hccccc-cCCcEEeCC
Q 013914 213 GYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---G--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDD 283 (434)
Q Consensus 213 ~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~---g--~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~ 283 (434)
+.|.+.|++|+++++|...+.+.+|.+ .+++.+ + ++++||.+++++|++|-+.-+ +.++.. ..+++.||.
T Consensus 260 r~L~kQgikF~l~tkv~~a~~~~dg~v-~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~ 338 (506)
T KOG1335|consen 260 RVLQKQGIKFKLGTKVTSATRNGDGPV-EIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNT 338 (506)
T ss_pred HHHHhcCceeEeccEEEEeeccCCCce-EEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccc
Confidence 999999999999999999998777643 454433 2 479999999999999998755 345665 678999999
Q ss_pred CCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC
Q 013914 284 FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV 363 (434)
Q Consensus 284 ~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~ 363 (434)
+++|.+|+||++|||...|+. +..|..||-.+.+.|.+.. ....|..+|.+.++.|+++|+ |.++
T Consensus 339 ~f~t~vP~i~~IGDv~~gpML----------AhkAeeegI~~VE~i~g~~---~hv~ynciP~v~ythPEvawV--G~TE 403 (506)
T KOG1335|consen 339 RFQTKVPHIYAIGDVTLGPML----------AHKAEEEGIAAVEGIAGGH---GHVDYNCIPSVVYTHPEVAWV--GKTE 403 (506)
T ss_pred cccccCCceEEecccCCcchh----------hhhhhhhchhheeeecccC---cccccCCCCceeecccceeee--ccch
Confidence 999999999999999998854 5567789999988888753 238899999999999999999 5543
Q ss_pred ------CCEEEEcCCCcc--------cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhcc
Q 013914 364 ------GDTVLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNE 426 (434)
Q Consensus 364 ------~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~ 426 (434)
|..+..|..+.. ...++|+|+.. +++||||+||+||+|.|+ +.+++||..+.+.+|+.+.--+
T Consensus 404 eqlkeegi~y~vgkfpF~aNsRaktn~d~eg~vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDvarvcha 483 (506)
T KOG1335|consen 404 EQLKEEGIKYKVGKFPFSANSRAKTNNDTEGFVKVLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVARVCHA 483 (506)
T ss_pred hhHHhcCcceEeeeccccccchhhccCCccceeEEEecCCCCcEEEEEEecCCHHHHHHHHHHHHHhCccHHHHhhccCC
Confidence 555666655543 24577888777 789999999999999996 9999999999999999987777
Q ss_pred CCCccc
Q 013914 427 GLSFAS 432 (434)
Q Consensus 427 ~~~~~~ 432 (434)
.+++-.
T Consensus 484 HPTlSE 489 (506)
T KOG1335|consen 484 HPTLSE 489 (506)
T ss_pred CCcHHH
Confidence 766543
No 42
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=9.5e-44 Score=309.38 Aligned_cols=394 Identities=18% Similarity=0.224 Sum_probs=287.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCcc-CccccCCCCC----C----------CCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPAL-SKAYLFPEGT----A----------RLPG 65 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~-~~~~~~~~~~----~----------~~~~ 65 (434)
+.+|.+|||||.+|+++|+++++.|.+ +.|+|.....+ .++.|. .+-+|+.... . ....
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAk---v~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~ 95 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAK---VALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGS 95 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCce---EEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccC
Confidence 469999999999999999999999987 89999873211 122222 2333322210 0 1111
Q ss_pred cccccCCC--------CCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCCc--EEEcceEEEecCCCcccccCCCCC
Q 013914 66 FHVCVGSG--------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVLRLTDFGVE 135 (434)
Q Consensus 66 ~~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~lvlAtG~~~~~~~~~~~~ 135 (434)
|.|..-.. ....+...+.+.+++++.+ ...-+++..-.|...++. .+++++++||||++|..|+ ||
T Consensus 96 fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G-~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~Pn---Ip 171 (478)
T KOG0405|consen 96 FDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEG-RARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPN---IP 171 (478)
T ss_pred CcHHHHHhhhhHHHHHHHHHHHhhccccceeEEee-eEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCCC---CC
Confidence 11111000 0011222334467888888 444444544566666664 3789999999999999997 67
Q ss_pred CCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHH
Q 013914 136 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY 215 (434)
Q Consensus 136 g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l 215 (434)
|.+. -..++.+.+.+. .|++++|+|+|++++|+|..++.+|.+++++.|.+.++.. ||+.+++.+.+.+
T Consensus 172 G~E~--gidSDgff~Lee--------~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~-FD~~i~~~v~~~~ 240 (478)
T KOG0405|consen 172 GAEL--GIDSDGFFDLEE--------QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRG-FDEMISDLVTEHL 240 (478)
T ss_pred chhh--ccccccccchhh--------cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcc-hhHHHHHHHHHHh
Confidence 7542 112222222222 5899999999999999999999999999999999999987 8999999999999
Q ss_pred HhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-cCCcEEeCCCCCCCCCc
Q 013914 216 ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADD 291 (434)
Q Consensus 216 ~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~ 291 (434)
+..||++|.++.++++....+|.. .+.+..|....+|.++||+|++||+.-+ +.++.+ .+|.|.||++.+||+|+
T Consensus 241 ~~~ginvh~~s~~~~v~K~~~g~~-~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~ 319 (478)
T KOG0405|consen 241 EGRGINVHKNSSVTKVIKTDDGLE-LVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPS 319 (478)
T ss_pred hhcceeecccccceeeeecCCCce-EEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCCc
Confidence 999999999999999988666644 3445556555699999999999999755 447777 78999999999999999
Q ss_pred EEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCCC-------
Q 013914 292 VYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG------- 364 (434)
Q Consensus 292 iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~------- 364 (434)
||++||+++-- .+...|+.+|+..+..+++... .....|..+|..++..|.+..+ |+++.
T Consensus 320 I~avGDv~gk~----------~LTPVAiaagr~la~rlF~~~~-~~kldY~nVp~vVFshP~igtV--GLtE~EAiekyg 386 (478)
T KOG0405|consen 320 IWAVGDVTGKI----------NLTPVAIAAGRKLANRLFGGGK-DTKLDYENVPCVVFSHPPIGTV--GLTEEEAIEKYG 386 (478)
T ss_pred eEEeccccCcE----------ecchHHHhhhhhHHHHhhcCCC-CCccccccCceEEEecCCcccc--cCCHHHHHHHhC
Confidence 99999999854 3456688899999999998422 1348899999999988888766 66542
Q ss_pred --C-EEEEcCCCcc------cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCC
Q 013914 365 --D-TVLFGDNDLA------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLS 429 (434)
Q Consensus 365 --~-~~~~~~~~~~------~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~ 429 (434)
+ .+......+. ...+.+.|+++ ++.+++|+||+|+.+.|| +.++.|+.+|.|..|+++...-.++
T Consensus 387 ~~~i~vy~s~F~pm~~a~~~~k~kt~mKlvc~~~~eKVvG~hm~G~~s~EilQGf~VAvKmGaTKadFD~tVaIHPT 463 (478)
T KOG0405|consen 387 KGDIKVYTSKFNPMKYAMSGRKEKTLMKLVCAGKSEKVVGVHMCGDDSAEILQGFAVAVKMGATKADFDSTVAIHPT 463 (478)
T ss_pred ccceEEEecCCchhHhHhhcCCcceEEEEEEecCCCcEEEEEEecCCcHHHHhhhhhheecCcchhhhccceeecCC
Confidence 1 1222222111 23455677776 789999999999999997 9999999999999999876655444
No 43
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=1.6e-43 Score=326.99 Aligned_cols=311 Identities=25% Similarity=0.356 Sum_probs=251.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
+++|||||||++|+.+|..|.+.. ++.+|++||+++++.|. |.+..... ..++.- .....+...++.
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~-~~~~itLVd~~~~hl~~-plL~eva~-----g~l~~~------~i~~p~~~~~~~ 69 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL-PDVEITLVDRRDYHLFT-PLLYEVAT-----GTLSES------EIAIPLRALLRK 69 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC-CCCcEEEEeCCCccccc-hhhhhhhc-----CCCChh------heeccHHHHhcc
Confidence 579999999999999999999975 35669999999987654 32211111 111100 011344566664
Q ss_pred cC-cEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHh---
Q 013914 85 KG-IELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA--- 160 (434)
Q Consensus 85 ~~-v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~--- 160 (434)
.+ ++++++ +|++||++.++|.+.+++.+.||+||+|+|+.+..+. +||.. +..+.+++++++.++++++..
T Consensus 70 ~~~v~~~~~-~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~fg---i~G~~-E~a~~lks~edA~~ir~~l~~~fe 144 (405)
T COG1252 70 SGNVQFVQG-EVTDIDRDAKKVTLADLGEISYDYLVVALGSETNYFG---IPGAA-EYAFGLKTLEDALRLRRHLLEAFE 144 (405)
T ss_pred cCceEEEEE-EEEEEcccCCEEEeCCCccccccEEEEecCCcCCcCC---CCCHH-HhCCCCCCHHHHHHHHHHHHHHHH
Confidence 44 999997 9999999999999999778999999999999987666 67754 567788999999998887751
Q ss_pred ----CCC----CcEEEECCCHHHHHHHHHHHhCC-------------CeEEEEccCCccCCccCCHHHHHHHHHHHHhcC
Q 013914 161 ----KKN----GKAVVVGGGYIGLELSAALKINN-------------IDVSMVYPEPWCMPRLFTADIAAFYEGYYANKG 219 (434)
Q Consensus 161 ----~~~----~~v~ViG~g~~~~e~a~~l~~~g-------------~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~G 219 (434)
... .+++|+|+|++|+|+|.+|.+.- .+|+++++.++++|. +++++++..++.|++.|
T Consensus 145 ~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~-~~~~l~~~a~~~L~~~G 223 (405)
T COG1252 145 KASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPM-FPPKLSKYAERALEKLG 223 (405)
T ss_pred HhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccC-CCHHHHHHHHHHHHHCC
Confidence 112 26899999999999999987641 389999999999996 89999999999999999
Q ss_pred cEEEcCCeEEEEEecCCCcEEEEEeCCCc-EEECCEEEEcccCccChhhhh-ccccc-cCCcEEeCCCCCC-CCCcEEEe
Q 013914 220 IKIIKGTVAVGFTTNADGEVKEVKLKDGR-TLEADIVVVGVGGRPLISLFK-GQVAE-NKGGIETDDFFKT-SADDVYAV 295 (434)
Q Consensus 220 V~~~~~~~v~~i~~~~~g~v~~v~~~~g~-~~~~D~vi~a~G~~p~~~~~~-~~~~~-~~g~i~vd~~~~t-~~~~iya~ 295 (434)
|++++++.|++++. ..|++++|. +|+++++|||+|.+++...-+ .+.+. ..|++.||+++|+ ++|+|||+
T Consensus 224 V~v~l~~~Vt~v~~------~~v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~ 297 (405)
T COG1252 224 VEVLLGTPVTEVTP------DGVTLKDGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAA 297 (405)
T ss_pred CEEEcCCceEEECC------CcEEEccCCeeEecCEEEEcCCCcCChhhhhcChhhhccCCCEEeCCCcccCCCCCeEEE
Confidence 99999999999986 357888887 499999999999999877655 35555 4699999999998 99999999
Q ss_pred cccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCC
Q 013914 296 GDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYL 344 (434)
Q Consensus 296 GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~ 344 (434)
|||+..... ...++.++.|.+||+.+|+||.....|++..+|.+.
T Consensus 298 GD~A~~~~~----~p~P~tAQ~A~Qqg~~~a~ni~~~l~g~~l~~f~y~ 342 (405)
T COG1252 298 GDCAAVIDP----RPVPPTAQAAHQQGEYAAKNIKARLKGKPLKPFKYK 342 (405)
T ss_pred eccccCCCC----CCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCCccc
Confidence 999987653 223478899999999999999999888766666653
No 44
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=5.6e-41 Score=323.87 Aligned_cols=301 Identities=21% Similarity=0.281 Sum_probs=234.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
++++|||||||+||+.+|..|.+.+. +|+|||+++++.|. +.+............. .......+.
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~---~ItlI~~~~~~~~~-~~l~~~~~g~~~~~~~-----------~~~~~~~~~ 73 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKY---NITVISPRNHMLFT-PLLPQTTTGTLEFRSI-----------CEPVRPALA 73 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCC---eEEEEcCCCCcchh-hhHHHhcccCCChHHh-----------HHHHHHHhc
Confidence 46899999999999999998865434 49999999876653 3322111110000000 012234455
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEc----------cCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHH
Q 013914 84 EKGIELILSTEIVRADIASKTLLS----------ATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADK 153 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~----------~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~ 153 (434)
..+++++.+ +|+.||++.+.|.+ .++.++.||+||||||+.+..++ +||.. ..++.++++.++..
T Consensus 74 ~~~~~~i~~-~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~---ipG~~-e~~~~~~~~~~a~~ 148 (424)
T PTZ00318 74 KLPNRYLRA-VVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFN---IPGVE-ERAFFLKEVNHARG 148 (424)
T ss_pred cCCeEEEEE-EEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCC---CCCHH-HcCCCCCCHHHHHH
Confidence 678888886 99999999999887 45668999999999999998777 57654 35677888998888
Q ss_pred HHHHHHhC---------------CCCcEEEECCCHHHHHHHHHHHh--------------CCCeEEEEccCCccCCccCC
Q 013914 154 LVEAIKAK---------------KNGKAVVVGGGYIGLELSAALKI--------------NNIDVSMVYPEPWCMPRLFT 204 (434)
Q Consensus 154 ~~~~l~~~---------------~~~~v~ViG~g~~~~e~a~~l~~--------------~g~~v~lv~~~~~~~~~~~~ 204 (434)
+++.+.++ ..++++|||+|++|+|+|..|.+ .+.+|+++++.+++++. ++
T Consensus 149 ~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~-~~ 227 (424)
T PTZ00318 149 IRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS-FD 227 (424)
T ss_pred HHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc-CC
Confidence 77765421 12489999999999999999876 37899999999999885 79
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhccccc-cCCcEEeCC
Q 013914 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDD 283 (434)
Q Consensus 205 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~ 283 (434)
+.+.+.+.+.|++.||+++++++|+++.. + .+.+++|+++++|.+|+++|.+|+..+...++.. ++|+|.||+
T Consensus 228 ~~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~----~v~~~~g~~i~~d~vi~~~G~~~~~~~~~~~l~~~~~G~I~Vd~ 301 (424)
T PTZ00318 228 QALRKYGQRRLRRLGVDIRTKTAVKEVLD--K----EVVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGRISVDD 301 (424)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeEEEEeC--C----EEEECCCCEEEccEEEEccCCCCcchhhhcCCcccCCCcEEeCC
Confidence 99999999999999999999999999975 2 4678899999999999999999985433445555 578999999
Q ss_pred CCCC-CCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCC
Q 013914 284 FFKT-SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGK 336 (434)
Q Consensus 284 ~~~t-~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 336 (434)
++|+ ++|||||+|||+..+.. ..++.+..|.+||+.+|+||.+...++
T Consensus 302 ~l~~~~~~~IfAiGD~a~~~~~-----~~~~~~~~A~~qg~~~A~ni~~~l~g~ 350 (424)
T PTZ00318 302 HLRVKPIPNVFALGDCAANEER-----PLPTLAQVASQQGVYLAKEFNNELKGK 350 (424)
T ss_pred CcccCCCCCEEEEeccccCCCC-----CCCCchHHHHHHHHHHHHHHHHHhcCC
Confidence 9995 99999999999986432 122678889999999999999877654
No 45
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=3.4e-39 Score=307.11 Aligned_cols=305 Identities=23% Similarity=0.318 Sum_probs=236.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhcC
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 86 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (434)
+|||||||+||+.+|..|+++..+..+|+|||+++.+.|... +. .+...... .. .......+++++.+
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~-~~-~~~~g~~~--~~--------~~~~~~~~~~~~~g 68 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGM-LP-GMIAGHYS--LD--------EIRIDLRRLARQAG 68 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccch-hh-HHHheeCC--HH--------HhcccHHHHHHhcC
Confidence 589999999999999999765334567999999988766532 11 11111000 00 01123456677789
Q ss_pred cEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHh-----C
Q 013914 87 IELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA-----K 161 (434)
Q Consensus 87 v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~-----~ 161 (434)
++++.+ .|+.+|++.++|.+.+++++.||+||||||+.|..|+ ++|. .++++.+++.+++....+.+.. .
T Consensus 69 v~~~~~-~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~---i~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (364)
T TIGR03169 69 ARFVIA-EATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPLSG---VEGA-ADLAVPVKPIENFLARWEALLESADAPP 143 (364)
T ss_pred CEEEEE-EEEEEecccCEEEECCCCcccccEEEEccCCCCCCCC---CCcc-cccccccCCHHHHHHHHHHHHHHHhcCC
Confidence 999986 8999999999999999988999999999999998887 5663 4667778888877764333321 1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHh----CC--CeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC
Q 013914 162 KNGKAVVVGGGYIGLELSAALKI----NN--IDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA 235 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~----~g--~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~ 235 (434)
..++++|+|+|++|+|+|..|.+ .| .+|+++ ..+.+++. +++++.+.+.+.+++.||++++++.+++++.
T Consensus 144 ~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~-- 219 (364)
T TIGR03169 144 GTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPG-FPAKVRRLVLRLLARRGIEVHEGAPVTRGPD-- 219 (364)
T ss_pred CCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccccc-CCHHHHHHHHHHHHHCCCEEEeCCeeEEEcC--
Confidence 35799999999999999999975 34 589999 56677665 7889999999999999999999999998864
Q ss_pred CCcEEEEEeCCCcEEECCEEEEcccCccChhhhhccccc-cCCcEEeCCCCCC-CCCcEEEecccccccccccCcceecc
Q 013914 236 DGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKT-SADDVYAVGDVATFPMKLYREMRRVE 313 (434)
Q Consensus 236 ~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t-~~~~iya~GD~~~~~~~~~~~~~~~~ 313 (434)
+ .+.+.+|+++++|.+++|+|.+|+..+...++.. .+|++.||+++|| ++|+|||+|||+..+... ..+
T Consensus 220 ~----~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~-----~~~ 290 (364)
T TIGR03169 220 G----ALILADGRTLPADAILWATGARAPPWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAP-----RPK 290 (364)
T ss_pred C----eEEeCCCCEEecCEEEEccCCChhhHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCC-----CCC
Confidence 2 4677889999999999999999997766666666 5789999999998 999999999999764321 114
Q ss_pred cHHHHHHHHHHHHHHHhccCCCCcccCC
Q 013914 314 HVDHARKSAEQAVKTIMATEGGKTVTGY 341 (434)
Q Consensus 314 ~~~~A~~~g~~aa~~i~~~~~~~~~~~~ 341 (434)
.+..|..||+.+|+||.....+++..+|
T Consensus 291 ~~~~A~~~g~~~a~ni~~~l~g~~~~~~ 318 (364)
T TIGR03169 291 AGVYAVRQAPILAANLRASLRGQPLRPF 318 (364)
T ss_pred chHHHHHhHHHHHHHHHHHhcCCCCCCC
Confidence 6778999999999999987766544444
No 46
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-37 Score=270.23 Aligned_cols=397 Identities=21% Similarity=0.248 Sum_probs=266.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC----CC-------CCccCccccCCCCC-----CCCCCcc
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP----YE-------RPALSKAYLFPEGT-----ARLPGFH 67 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~----~~-------~~~~~~~~~~~~~~-----~~~~~~~ 67 (434)
.+||.+|||||.+||+||.+++..|.+ |.++|--...| |. -.++.+.+++.... +....|.
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~k---V~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyG 94 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAK---VACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYG 94 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCc---EEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhC
Confidence 369999999999999999999999987 78776432211 11 11233333332211 1111111
Q ss_pred cccCCCCCC-CChhhH-------hhcC----cEEEcCCeeEEEE-----CCCCEEEc--cCC--cEEEcceEEEecCCCc
Q 013914 68 VCVGSGGER-LLPEWY-------KEKG----IELILSTEIVRAD-----IASKTLLS--ATG--LIFKYQILVIATGSTV 126 (434)
Q Consensus 68 ~~~~~~~~~-~~~~~~-------~~~~----v~~~~~~~v~~i~-----~~~~~v~~--~~~--~~~~~d~lvlAtG~~~ 126 (434)
+........ .+.... +..+ ++++. ..|.-++ .+.+++.. .++ +.+++++++||||.+|
T Consensus 95 W~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~Lre-KkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RP 173 (503)
T KOG4716|consen 95 WNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLRE-KKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRP 173 (503)
T ss_pred CCCccccccccHHHHHHHHHHHhhhccceEEEEecc-ceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCC
Confidence 111100001 111111 1111 11111 1222221 12233322 223 3689999999999999
Q ss_pred ccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHH
Q 013914 127 LRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTAD 206 (434)
Q Consensus 127 ~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~ 206 (434)
+.|. |||...-. .+++++..... .|.+.+|||+|+.++|+|..|+.+|.+|+++.|+ .++. .||++
T Consensus 174 rYp~---IpG~~Ey~-ITSDDlFsl~~--------~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRS-I~Lr-GFDqd 239 (503)
T KOG4716|consen 174 RYPD---IPGAKEYG-ITSDDLFSLPY--------EPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRS-ILLR-GFDQD 239 (503)
T ss_pred CCCC---CCCceeee-ecccccccccC--------CCCceEEEccceeeeehhhhHhhcCCCcEEEEEE-eecc-cccHH
Confidence 9988 57743222 23333332222 4788899999999999999999999999999886 3333 49999
Q ss_pred HHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccCccChhhh---hccccc--cC
Q 013914 207 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGRPLISLF---KGQVAE--NK 276 (434)
Q Consensus 207 ~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~---~~g~--~~~~D~vi~a~G~~p~~~~~---~~~~~~--~~ 276 (434)
++..+.+.|++.||+|.....+.+++..++|+. .|.. ..++ +-++|.|+||+|+.+.++-+ +.++.. ..
T Consensus 240 mae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks 318 (503)
T KOG4716|consen 240 MAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKS 318 (503)
T ss_pred HHHHHHHHHHHhCCceeecccceeeeeccCCcE-EEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccC
Confidence 999999999999999999988888887666753 2222 2222 45689999999999998865 346665 56
Q ss_pred CcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCcee
Q 013914 277 GGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSW 356 (434)
Q Consensus 277 g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~ 356 (434)
|.|.+|+.-+|++|+|||+||+..... ++...|++.|+..|+.+++... ....|..+|+.+++.+++..
T Consensus 319 ~KI~v~~~e~t~vp~vyAvGDIl~~kp---------ELTPvAIqsGrlLa~Rlf~gs~--q~~dy~~V~TTVFTPLEy~c 387 (503)
T KOG4716|consen 319 GKIPVDDEEATNVPYVYAVGDILEDKP---------ELTPVAIQSGRLLARRLFAGST--QLMDYDDVATTVFTPLEYGC 387 (503)
T ss_pred CccccChHHhcCCCceEEecceecCCc---------ccchhhhhhchHHHHHHhcCcc--eeeeccCCceeeecchhccc
Confidence 889999999999999999999987532 6677899999999999998654 34889999988887777665
Q ss_pred EEeecCCC-------C--EEEE-cCC-C------cccCCCcEEEEEE---eCCEEEEEEEecCCHHHH-HHHHHHHHcCC
Q 013914 357 QFYGDNVG-------D--TVLF-GDN-D------LASATHKFGTYWI---KDGKVVGVFLESGTPEEN-KAIAKVARVQP 415 (434)
Q Consensus 357 ~~~g~~~~-------~--~~~~-~~~-~------~~~~~~~~~~~~~---~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~ 415 (434)
. |+++. + ...+ +-. + ....+.+|.|.+. ++.||+|.|++||+|+|+ +.++.|++-++
T Consensus 388 ~--GlsEE~Ai~k~g~dnievfH~~f~P~E~~ipqrd~~~CY~K~vc~r~~~qkv~G~H~lgPnAgEV~QGfaaAlk~gl 465 (503)
T KOG4716|consen 388 V--GLSEEDAIEKYGEDNIEVFHSYFKPLEYTIPQRDVRHCYLKAVCERDEDQKVLGLHILGPNAGEVIQGFAAALKCGL 465 (503)
T ss_pred c--CCCHHHHHHHhCcccEEEeeccccceEEEcccccCCceEEEEeecccCCceEEEEEEecCchhHHHHHHHHHHHhcc
Confidence 5 66541 1 1111 110 1 0023456677666 678999999999999996 99999999999
Q ss_pred CCCChhhhhccCCCccc
Q 013914 416 SVESLDVLKNEGLSFAS 432 (434)
Q Consensus 416 ~~~~~~~l~~~~~~~~~ 432 (434)
|..|+++...-.+..+.
T Consensus 466 t~~~l~ntigIHPt~aE 482 (503)
T KOG4716|consen 466 TKKDLDNTIGIHPTTAE 482 (503)
T ss_pred cHHHHhhcccccccchh
Confidence 99988876655554443
No 47
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=5.6e-37 Score=286.47 Aligned_cols=295 Identities=19% Similarity=0.183 Sum_probs=210.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccC-CCCCCCChhh
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVG-SGGERLLPEW 81 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 81 (434)
.+.+||+||||||||++||.+|+++|++ +++||+....+.. ........+|+...... ........+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~---~~~ie~~~~gg~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQ---PVLITGMEKGGQL--------TTTTEVENWPGDPNDLTGPLLMERMHEH 72 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCC---eEEEEeecCCCce--------ecCceECCCCCCCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999999986 8999865321110 00011112222111000 0001122344
Q ss_pred HhhcCcEEEcCCeeEEEECCCCEEEcc-CCcEEEcceEEEecCCCcccccCCCCCCCC---CCCeEEecCHHHHHHHHHH
Q 013914 82 YKEKGIELILSTEIVRADIASKTLLSA-TGLIFKYQILVIATGSTVLRLTDFGVEGAD---AKNIFYLREIDDADKLVEA 157 (434)
Q Consensus 82 ~~~~~v~~~~~~~v~~i~~~~~~v~~~-~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~ 157 (434)
....++++..+ .+..++...+.+.+. +...+.||+||+|||+.|+.|+ +||.+ ...++.+.......
T Consensus 73 ~~~~~~~~~~~-~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~~~~---i~g~~~~~~~~v~~~~~~~~~~----- 143 (321)
T PRK10262 73 ATKFETEIIFD-HINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLG---LPSEEAFKGRGVSACATCDGFF----- 143 (321)
T ss_pred HHHCCCEEEee-EEEEEEecCCeEEEEecCCEEEECEEEECCCCCCCCCC---CCCHHHcCCCcEEEeecCCHHH-----
Confidence 45566777775 677788766664432 2346899999999999998777 45532 34455444333221
Q ss_pred HHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCC
Q 013914 158 IKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 237 (434)
Q Consensus 158 l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g 237 (434)
..+++++|||+|++|+|+|..|.+.+.+|+++++.+.+. .++.+.+.+.+.+++.||++++++.++++..+ ++
T Consensus 144 ---~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~---~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~-~~ 216 (321)
T PRK10262 144 ---YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVTGD-QM 216 (321)
T ss_pred ---cCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC---CCHHHHHHHHhhccCCCeEEEeCCEEEEEEcC-Cc
Confidence 158999999999999999999999999999999987653 35777888899999999999999999999862 33
Q ss_pred cEEEEEeCCC------cEEECCEEEEcccCccChhhhhccccccCCcEEeCC-----CCCCCCCcEEEeccccccccccc
Q 013914 238 EVKEVKLKDG------RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDD-----FFKTSADDVYAVGDVATFPMKLY 306 (434)
Q Consensus 238 ~v~~v~~~~g------~~~~~D~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~-----~~~t~~~~iya~GD~~~~~~~~~ 306 (434)
.+..+++.++ +++++|.|++++|++||.++++.++..++|+|.||+ +++|++|+|||+|||+..+.
T Consensus 217 ~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~~l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~--- 293 (321)
T PRK10262 217 GVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIY--- 293 (321)
T ss_pred cEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhccccccCCEEEECCCCcccccccCCCCEEECeeccCCCc---
Confidence 4445655432 379999999999999999988766666778999997 78999999999999997543
Q ss_pred CcceecccHHHHHHHHHHHHHHHhccC
Q 013914 307 REMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 307 ~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
..+..|..+|..||..|....
T Consensus 294 ------~~~~~A~~~g~~Aa~~~~~~l 314 (321)
T PRK10262 294 ------RQAITSAGTGCMAALDAERYL 314 (321)
T ss_pred ------ceEEEEehhHHHHHHHHHHHH
Confidence 233446778888888876544
No 48
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=1.6e-36 Score=281.75 Aligned_cols=285 Identities=24% Similarity=0.310 Sum_probs=208.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccc-cCCCCCCCChhhHhh
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVC-VGSGGERLLPEWYKE 84 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 84 (434)
|||+|||||+||+++|..|++.|.+ |+|||+++... .+........+|++... .+........+.+++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~gg--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 69 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLK---TLIIEGMEPGG--------QLTTTTEVENYPGFPEGISGPELMEKMKEQAVK 69 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCC---EEEEeccCCCc--------ceeecccccccCCCCCCCChHHHHHHHHHHHHH
Confidence 6899999999999999999999987 99999886211 01111111112222110 000111234455677
Q ss_pred cCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCcccccCCCCCCCC---CCCeEEecCHHHHHHHHHHHH
Q 013914 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD---AKNIFYLREIDDADKLVEAIK 159 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~l~ 159 (434)
.+++++. ..|..+++..+ .+.+.++.++.||+||+|||+.|+.|+ +||.+ ...+++.......
T Consensus 70 ~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~---i~g~~~~~~~~~~~~~~~~~~-------- 137 (300)
T TIGR01292 70 FGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLG---IPGEDEFLGRGVSYCATCDGP-------- 137 (300)
T ss_pred cCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCC---CCChhhcCCccEEEeeecChh--------
Confidence 8999998 69999998765 455566778999999999999988776 45532 2344433322211
Q ss_pred hCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCc
Q 013914 160 AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGE 238 (434)
Q Consensus 160 ~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~-GV~~~~~~~v~~i~~~~~g~ 238 (434)
...+++++|+|+|++|+|+|..+.+.+.+|+++.+.+.+.. . ..+.+.+++. ||++++++.++++.. ++.
T Consensus 138 ~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~---~----~~~~~~l~~~~gv~~~~~~~v~~i~~--~~~ 208 (300)
T TIGR01292 138 FFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA---E----KILLDRLRKNPNIEFLWNSTVKEIVG--DNK 208 (300)
T ss_pred hcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc---C----HHHHHHHHhCCCeEEEeccEEEEEEc--cCc
Confidence 11578999999999999999999999999999999876532 2 3345566776 999999999999986 345
Q ss_pred EEEEEeC---CC--cEEECCEEEEcccCccChhhhhccccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceec
Q 013914 239 VKEVKLK---DG--RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRV 312 (434)
Q Consensus 239 v~~v~~~---~g--~~~~~D~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~ 312 (434)
+..+++. +| +++++|.+++|+|++|+.++++..+.. .+|++.||++++|++||||++|||+....
T Consensus 209 ~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~~~~~~~g~i~v~~~~~t~~~~vya~GD~~~~~~--------- 279 (300)
T TIGR01292 209 VEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGLLELDEGGYIVTDEGMRTSVPGVFAAGDVRDKGY--------- 279 (300)
T ss_pred EEEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHhheecCCCcEEECCCCccCCCCEEEeecccCcch---------
Confidence 5455542 23 579999999999999999887655444 56899999999999999999999997421
Q ss_pred ccHHHHHHHHHHHHHHHhc
Q 013914 313 EHVDHARKSAEQAVKTIMA 331 (434)
Q Consensus 313 ~~~~~A~~~g~~aa~~i~~ 331 (434)
..+..|..+|+.||.+|..
T Consensus 280 ~~~~~A~~~g~~aa~~i~~ 298 (300)
T TIGR01292 280 RQAVTAAGDGCIAALSAER 298 (300)
T ss_pred hhhhhhhhhHHHHHHHHHh
Confidence 5678899999999999874
No 49
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=100.00 E-value=4.4e-37 Score=273.64 Aligned_cols=407 Identities=23% Similarity=0.355 Sum_probs=312.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCC--cccccCCCC--CCCChh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPG--FHVCVGSGG--ERLLPE 80 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~ 80 (434)
+...+|||+|.+..+++...+.. ..++.|.+|..++..||.||++++-+|+...+..... |....|... +.....
T Consensus 178 hvp~liigggtaAfaa~rai~s~-da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~ 256 (659)
T KOG1346|consen 178 HVPYLIIGGGTAAFAAFRAIKSN-DATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDG 256 (659)
T ss_pred cCceeEEcCCchhhhcccccccC-CCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCc
Confidence 45689999999987777666654 3467799999999999999999999998765543221 111222211 111111
Q ss_pred h---------HhhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCC-CCCCeEEecCHHH
Q 013914 81 W---------YKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGA-DAKNIFYLREIDD 150 (434)
Q Consensus 81 ~---------~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~-~~~~v~~~~~~~~ 150 (434)
+ ...-||-+..+..|..||...+.|.+.||.+|.||+++||||.+|+..+.+.-.+. -...+..++.+.|
T Consensus 257 FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~D 336 (659)
T KOG1346|consen 257 FFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPAD 336 (659)
T ss_pred ceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecchH
Confidence 1 12347999999999999999999999999999999999999999987765221111 2456888899999
Q ss_pred HHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhC----CCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCC
Q 013914 151 ADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN----NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT 226 (434)
Q Consensus 151 ~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~----g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~ 226 (434)
+.++...+.+ .+++.|||+|++|.|+|..|.+. |.+|+-+......+...++..++++-.+.+++.||.++.+.
T Consensus 337 F~rlek~~ae--k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna 414 (659)
T KOG1346|consen 337 FKRLEKGLAE--KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNA 414 (659)
T ss_pred HHHHHHhhhh--cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccch
Confidence 9999888875 48999999999999999998764 78999888877777777888899999999999999999999
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhc-cccc--cCCcEEeCCCCCCCCCcEEEecccccccc
Q 013914 227 VAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE--NKGGIETDDFFKTSADDVYAVGDVATFPM 303 (434)
Q Consensus 227 ~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~-~~~~--~~g~i~vd~~~~t~~~~iya~GD~~~~~~ 303 (434)
.|.++..+... ..+++.||.++..|+|++|+|-.||++++.. +++. .-|++.||..++. ..|||++||++.+.+
T Consensus 415 ~v~sv~~~~~n--l~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~a-r~NvwvAGdaacF~D 491 (659)
T KOG1346|consen 415 KVESVRKCCKN--LVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELKA-RENVWVAGDAACFED 491 (659)
T ss_pred hhhhhhhhccc--eEEEecCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheeec-ccceeeecchhhhhc
Confidence 99998773333 5689999999999999999999999999965 5555 5689999999998 789999999999998
Q ss_pred cccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEec-cCceeEEeecCC------CCEE---------
Q 013914 304 KLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRA-FDLSWQFYGDNV------GDTV--------- 367 (434)
Q Consensus 304 ~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~g~~~------~~~~--------- 367 (434)
...|. ++.+|+.+|.-.|+.|+.||.+.. .+|....+||+.. +++.+..+|+-. |..-
T Consensus 492 ~~LGr-RRVehhdhavvSGRLAGENMtgAa-----kpy~hqsmFWsdlgP~igyeaIGlvDSSLpTVgVfA~p~s~~~~~ 565 (659)
T KOG1346|consen 492 GVLGR-RRVEHHDHAVVSGRLAGENMTGAA-----KPYKHQSMFWSDLGPEIGYEAIGLVDSSLPTVGVFALPSSATRVD 565 (659)
T ss_pred ccccc-eeccccccceeeceeccccccccc-----CCccccceeeeccCcccccceeeecccCCCcceeeeccccccchh
Confidence 87775 455899999999999999999865 7888888999874 556666666422 1000
Q ss_pred ---EEcCC-----------------Ccc--------cCCCcE---EEEEEeCCEEEEEEEecCCHHHHHHHHHHHHcCCC
Q 013914 368 ---LFGDN-----------------DLA--------SATHKF---GTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPS 416 (434)
Q Consensus 368 ---~~~~~-----------------~~~--------~~~~~~---~~~~~~~~~ilG~~~~g~~~~~~~~~~~~i~~~~~ 416 (434)
...+. .+. .+...| +.||++++.|+|+.+++-- ..+..+...|..+..
T Consensus 566 ~~se~sdt~v~~~s~s~s~ss~~~~~~s~~~v~~~P~e~~~ygKgViFYl~d~~iVGilLwN~F-nr~~~AR~II~d~kk 644 (659)
T KOG1346|consen 566 QLSESSDTDVPETSTSSSQSSKSDAGASQDGVTCDPDEAGNYGKGVIFYLKDDKIVGILLWNLF-NRIGLARTIINDNKK 644 (659)
T ss_pred hhhhccCCCCccccccccccccccCCcCCCCCccCcccccccCceEEEEecCCcEEEEEehhhh-ccchhhHHHhccccc
Confidence 00011 000 011223 4578899999999999643 478888899999888
Q ss_pred CCChhhhh
Q 013914 417 VESLDVLK 424 (434)
Q Consensus 417 ~~~~~~l~ 424 (434)
.+|+..++
T Consensus 645 ~ddlnEvA 652 (659)
T KOG1346|consen 645 YDDLNEVA 652 (659)
T ss_pred hhhHHHHH
Confidence 88877543
No 50
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=1.3e-36 Score=299.86 Aligned_cols=289 Identities=21% Similarity=0.289 Sum_probs=209.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
..+||+||||||||++||.+|++.|.+ |+||++.. .+. +... ....++.++....+......+.+.++
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~---v~li~~~~-GG~--~~~~------~~~~~~~~~~~~~~~~l~~~l~~~l~ 278 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLR---TAMVAERI-GGQ--VKDT------VGIENLISVPYTTGSQLAANLEEHIK 278 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCC-CCc--cccC------cCcccccccCCCCHHHHHHHHHHHHH
Confidence 358999999999999999999999987 99997531 110 0000 00111111111011111223445566
Q ss_pred hcCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCcccccCCCCCCC---CCCCeEEecCHHHHHHHHHHH
Q 013914 84 EKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGA---DAKNIFYLREIDDADKLVEAI 158 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~~~~l 158 (434)
+.+++++.++.|..++.+.+ .+.+.++..+.||++|+|||+.|+.++ ++|. ...+++.+...+...
T Consensus 279 ~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~---ipG~~~~~~~~v~~~~~~~~~~------ 349 (515)
T TIGR03140 279 QYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLG---VPGEKEYIGKGVAYCPHCDGPF------ 349 (515)
T ss_pred HhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCCCC---CCCHHHcCCCeEEEeeccChhh------
Confidence 78999999989999987654 456667778999999999999987776 4553 223455443322211
Q ss_pred HhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCC
Q 013914 159 KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADG 237 (434)
Q Consensus 159 ~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~g 237 (434)
..+++++|||+|++|+|+|..|++.+.+|+++++.+.+.. .+.+.+.+++ .||++++++.+.++.. +++
T Consensus 350 --~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~-------~~~l~~~l~~~~gV~i~~~~~v~~i~~-~~~ 419 (515)
T TIGR03140 350 --FKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA-------DKVLQDKLKSLPNVDILTSAQTTEIVG-DGD 419 (515)
T ss_pred --cCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh-------hHHHHHHHhcCCCCEEEECCeeEEEEc-CCC
Confidence 1578999999999999999999999999999998776532 2345666765 6999999999999986 335
Q ss_pred cEEEEEeCC---C--cEEECCEEEEcccCccChhhhhccccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCccee
Q 013914 238 EVKEVKLKD---G--RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR 311 (434)
Q Consensus 238 ~v~~v~~~~---g--~~~~~D~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~ 311 (434)
.+..+++.+ | +++++|.|++++|++|++++++..+.. .+|+|.||+++||++|+|||+|||+..+.
T Consensus 420 ~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~~~~~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~-------- 491 (515)
T TIGR03140 420 KVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDAVELNRRGEIVIDERGRTSVPGIFAAGDVTTVPY-------- 491 (515)
T ss_pred EEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhhcccCCCCeEEECCCCCCCCCCEEEcccccCCcc--------
Confidence 666676643 2 468999999999999999988655555 56889999999999999999999998654
Q ss_pred cccHHHHHHHHHHHHHHHhcc
Q 013914 312 VEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 312 ~~~~~~A~~~g~~aa~~i~~~ 332 (434)
..+..|..+|..||.++...
T Consensus 492 -~~~~~A~~~G~~Aa~~i~~~ 511 (515)
T TIGR03140 492 -KQIIIAMGEGAKAALSAFDY 511 (515)
T ss_pred -ceEEEEEccHHHHHHHHHHH
Confidence 23345778999999888754
No 51
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.6e-36 Score=269.69 Aligned_cols=289 Identities=24% Similarity=0.294 Sum_probs=217.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCccc-ccCCCCCCCChhhH
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHV-CVGSGGERLLPEWY 82 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 82 (434)
+++||+|||||||||+||.++.+.+++. ++|+|+.....+ +.......++|++.. ..+........+..
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~--~li~~~~~~gg~--------~~~~~~venypg~~~~~~g~~L~~~~~~~a 71 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKV--VLILEGGEPGGQ--------LTKTTDVENYPGFPGGILGPELMEQMKEQA 71 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCc--EEEEecCCcCCc--------cccceeecCCCCCccCCchHHHHHHHHHHH
Confidence 4799999999999999999999998773 566666533211 111113455666554 22222333444555
Q ss_pred hhcCcEEEcCCeeEEEECCC--CEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHh
Q 013914 83 KEKGIELILSTEIVRADIAS--KTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA 160 (434)
Q Consensus 83 ~~~~v~~~~~~~v~~i~~~~--~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~ 160 (434)
...++++.. ..+..++... ..|.+.++. ++++++|||||..++.|..++-+.....+++++..++. .+
T Consensus 72 ~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg--~~------ 141 (305)
T COG0492 72 EKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG--FF------ 141 (305)
T ss_pred hhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCc--cc------
Confidence 567888888 4888888775 456666776 99999999999999888743222233467888877665 22
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcE
Q 013914 161 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEV 239 (434)
Q Consensus 161 ~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~-GV~~~~~~~v~~i~~~~~g~v 239 (434)
++++++|||+|.+++|.|..|.+.+.+|++++|.+.+.. .+.+.+.++++ +|++++++.+.++.. ++ +
T Consensus 142 -~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra-------~~~~~~~l~~~~~i~~~~~~~i~ei~G--~~-v 210 (305)
T COG0492 142 -KGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA-------EEILVERLKKNVKIEVLTNTVVKEILG--DD-V 210 (305)
T ss_pred -cCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc-------CHHHHHHHHhcCCeEEEeCCceeEEec--Cc-c
Confidence 578999999999999999999999999999999987765 23344555555 899999999999987 33 5
Q ss_pred EEEEeCCC----cEEECCEEEEcccCccChhhhhccccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceeccc
Q 013914 240 KEVKLKDG----RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEH 314 (434)
Q Consensus 240 ~~v~~~~g----~~~~~D~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~ 314 (434)
..+++.+. +++.+|-+++++|..|+++++.....+ ++|+|.||+.++||+|+|||||||+.... .+
T Consensus 211 ~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~g~I~v~~~~~TsvpGifAaGDv~~~~~---------rq 281 (305)
T COG0492 211 EGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEEMETSVPGIFAAGDVADKNG---------RQ 281 (305)
T ss_pred ceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccccCCCCcEEcCCCcccCCCCEEEeEeeccCcc---------cE
Confidence 67777663 268899999999999999988764444 78999999999999999999999998764 24
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 013914 315 VDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 315 ~~~A~~~g~~aa~~i~~~ 332 (434)
+..|..+|..||.++...
T Consensus 282 i~ta~~~G~~Aa~~a~~~ 299 (305)
T COG0492 282 IATAAGDGAIAALSAERY 299 (305)
T ss_pred EeehhhhHHHHHHHHHHH
Confidence 556667888888777654
No 52
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=1.4e-35 Score=294.59 Aligned_cols=290 Identities=23% Similarity=0.286 Sum_probs=204.4
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhh
Q 013914 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEW 81 (434)
Q Consensus 2 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (434)
|.+.|||+||||||||++||.+|++.|++ |+|||++...+. +........++++....+......+.+.
T Consensus 1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~---V~liE~~~~GG~--------~~~~~~i~~~pg~~~~~~~~l~~~l~~~ 69 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLD---TLIIEKDDFGGQ--------ITITSEVVNYPGILNTTGPELMQEMRQQ 69 (555)
T ss_pred CCCcCcEEEECCCHHHHHHHHHHHHCCCC---EEEEecCCCCce--------EEeccccccCCCCcCCCHHHHHHHHHHH
Confidence 34579999999999999999999999887 999999753211 0000111112221111010111223344
Q ss_pred HhhcCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCcccccCCCCCCC---CCCCeEEecCHHHHHHHHH
Q 013914 82 YKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGA---DAKNIFYLREIDDADKLVE 156 (434)
Q Consensus 82 ~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~~~ 156 (434)
+++.+++++. ..|+.++.+.+ .+.+.++ .+.++++|+|||+.|+.|+ ++|. ...+++++.......
T Consensus 70 ~~~~gv~~~~-~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~~---ipG~~~~~~~~v~~~~~~~~~~---- 140 (555)
T TIGR03143 70 AQDFGVKFLQ-AEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRKLG---FPGEEEFTGRGVAYCATCDGEF---- 140 (555)
T ss_pred HHHcCCEEec-cEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCCCC---CCCHHHhCCceEEEEeecChhh----
Confidence 5567899875 58888887654 3445444 6899999999999998887 4553 234555544332211
Q ss_pred HHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCC
Q 013914 157 AIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 236 (434)
Q Consensus 157 ~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~ 236 (434)
..+++++|||+|++|+|+|..|.+.|.+|+++.+.+.+.. ..... .+.+++.||++++++.|+++.. +
T Consensus 141 ----~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~---~~~~~---~~~~~~~gV~i~~~~~V~~i~~--~ 208 (555)
T TIGR03143 141 ----FTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC---AKLIA---EKVKNHPKIEVKFNTELKEATG--D 208 (555)
T ss_pred ----cCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc---CHHHH---HHHHhCCCcEEEeCCEEEEEEc--C
Confidence 1579999999999999999999999999999999876532 33322 3334557999999999999975 3
Q ss_pred CcEEEEE---eCCCcEE----ECCE----EEEcccCccChhhhhccccc-cCCcEEeCCCCCCCCCcEEEeccccccccc
Q 013914 237 GEVKEVK---LKDGRTL----EADI----VVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMK 304 (434)
Q Consensus 237 g~v~~v~---~~~g~~~----~~D~----vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~ 304 (434)
+.+..+. ..+|++. ++|. |++++|++|++++++.++.+ ++|+|.||+++||++|+|||+|||+....
T Consensus 209 ~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~~l~l~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~- 287 (555)
T TIGR03143 209 DGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKGVVELDKRGYIPTNEDMETNVPGVYAAGDLRPKEL- 287 (555)
T ss_pred CcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhhhcccCCCCeEEeCCccccCCCCEEEceeccCCCc-
Confidence 4443333 2456543 3676 99999999999998876666 57899999999999999999999975321
Q ss_pred ccCcceecccHHHHHHHHHHHHHHHhcc
Q 013914 305 LYREMRRVEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 305 ~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 332 (434)
..+..|..+|+.||.+|...
T Consensus 288 --------~~v~~A~~~G~~Aa~~i~~~ 307 (555)
T TIGR03143 288 --------RQVVTAVADGAIAATSAERY 307 (555)
T ss_pred --------chheeHHhhHHHHHHHHHHH
Confidence 35667889999999998643
No 53
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=1.8e-35 Score=292.30 Aligned_cols=289 Identities=22% Similarity=0.283 Sum_probs=212.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.+||+||||||||++||.+|+++|++ |+||++.....+ ........++++....+......+...+++
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~---v~li~~~~GG~~---------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 278 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIR---TGIVAERFGGQV---------LDTMGIENFISVPETEGPKLAAALEEHVKE 278 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCee---------eccCcccccCCCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999987 899986411000 000011112222111111112344556677
Q ss_pred cCcEEEcCCeeEEEECCC--CEEEccCCcEEEcceEEEecCCCcccccCCCCCCC---CCCCeEEecCHHHHHHHHHHHH
Q 013914 85 KGIELILSTEIVRADIAS--KTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGA---DAKNIFYLREIDDADKLVEAIK 159 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~--~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~~~~l~ 159 (434)
.+++++.++.+..++... ..+.+.++.++.||++|+|||+.|+.++ +||. ....+++....+...
T Consensus 279 ~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~---ipG~~~~~~~~v~~~~~~~~~~------- 348 (517)
T PRK15317 279 YDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRNMN---VPGEDEYRNKGVAYCPHCDGPL------- 348 (517)
T ss_pred CCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCCC---CCCHHHhcCceEEEeeccCchh-------
Confidence 899999988999998864 3566677778999999999999988776 4553 234454443222211
Q ss_pred hCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCc
Q 013914 160 AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGE 238 (434)
Q Consensus 160 ~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~g~ 238 (434)
.++++++|||+|++|+|+|..|+..+.+|+++.+.+.+.. + +.+.+.+.+ .||++++++.+.++.. ++++
T Consensus 349 -~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~---~----~~l~~~l~~~~gI~i~~~~~v~~i~~-~~g~ 419 (517)
T PRK15317 349 -FKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA---D----QVLQDKLRSLPNVTIITNAQTTEVTG-DGDK 419 (517)
T ss_pred -cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc---c----HHHHHHHhcCCCcEEEECcEEEEEEc-CCCc
Confidence 1578999999999999999999999999999998876643 2 344555555 6999999999999986 3466
Q ss_pred EEEEEeC---CC--cEEECCEEEEcccCccChhhhhccccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceec
Q 013914 239 VKEVKLK---DG--RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRV 312 (434)
Q Consensus 239 v~~v~~~---~g--~~~~~D~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~ 312 (434)
+..+++. +| +++++|.+++++|++|++++++..+.. .+|+|.||+++||++|+|||+|||+..+.
T Consensus 420 v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~v~~~~~g~i~vd~~l~Ts~p~IyAaGDv~~~~~--------- 490 (517)
T PRK15317 420 VTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGTVELNRRGEIIVDARGATSVPGVFAAGDCTTVPY--------- 490 (517)
T ss_pred EEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhheeeCCCCcEEECcCCCCCCCCEEECccccCCCC---------
Confidence 6666654 33 358999999999999999988655555 56899999999999999999999998654
Q ss_pred ccHHHHHHHHHHHHHHHhccC
Q 013914 313 EHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 313 ~~~~~A~~~g~~aa~~i~~~~ 333 (434)
+.+..|..+|..||.++...+
T Consensus 491 k~~~~A~~eG~~Aa~~~~~~l 511 (517)
T PRK15317 491 KQIIIAMGEGAKAALSAFDYL 511 (517)
T ss_pred CEEEEhhhhHHHHHHHHHHHH
Confidence 345667889999998887654
No 54
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=100.00 E-value=2.9e-35 Score=285.48 Aligned_cols=286 Identities=21% Similarity=0.237 Sum_probs=206.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
+.++|+|||||+||+++|..|++.|++ |+|+|+++.... .+.. .++.+... ........+.++
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~---V~vie~~~~~GG--------~l~~----gip~~~~~--~~~~~~~~~~l~ 194 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHS---VTVFEALHKPGG--------VVTY----GIPEFRLP--KEIVVTEIKTLK 194 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCc---EEEEecCCCCCc--------Eeee----cCCCccCC--HHHHHHHHHHHH
Confidence 358999999999999999999999987 999999864221 1100 01111000 000112234566
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCC-CcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHH---
Q 013914 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS-TVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIK--- 159 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~-~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~--- 159 (434)
+.|++++.+..+ .+.+.+.+. ...||+||+|||+ .|+.++ ++|.+..++++..++.+...+.....
T Consensus 195 ~~gv~~~~~~~v------~~~v~~~~~-~~~yd~viiAtGa~~p~~~~---ipG~~~~gv~~~~~~l~~~~~~~~~~~~~ 264 (449)
T TIGR01316 195 KLGVTFRMNFLV------GKTATLEEL-FSQYDAVFIGTGAGLPKLMN---IPGEELCGVYSANDFLTRANLMKAYEFPH 264 (449)
T ss_pred hCCcEEEeCCcc------CCcCCHHHH-HhhCCEEEEeCCCCCCCcCC---CCCCCCCCcEEHHHHHHHHhhcccccccc
Confidence 789999988543 233444333 3579999999998 677776 67877778887665544332211100
Q ss_pred ----hCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC
Q 013914 160 ----AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA 235 (434)
Q Consensus 160 ----~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~ 235 (434)
...+++++|||+|++|+|+|..+.+.|.+|+++++.++... +. .....+.+++.||++++++.+.++..++
T Consensus 265 ~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~---~~--~~~~~~~l~~~GV~~~~~~~~~~i~~~~ 339 (449)
T TIGR01316 265 ADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDM---TA--RVEEIAHAEEEGVKFHFLCQPVEIIGDE 339 (449)
T ss_pred cCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccC---CC--CHHHHHHHHhCCCEEEeccCcEEEEEcC
Confidence 12468999999999999999999999999999998764211 11 1223356788999999999999998655
Q ss_pred CCcEEEEEeC---------CC-----------cEEECCEEEEcccCccChhhhhc-cccc-cCCcEEeCCCCCCCCCcEE
Q 013914 236 DGEVKEVKLK---------DG-----------RTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVY 293 (434)
Q Consensus 236 ~g~v~~v~~~---------~g-----------~~~~~D~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~iy 293 (434)
+|++..+++. +| .++++|.||+|+|+.|++.+++. ++.. .+|+|.||+++||+.|+||
T Consensus 340 ~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~~~Ts~~~Vf 419 (449)
T TIGR01316 340 EGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVF 419 (449)
T ss_pred CCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCCCCccCCCCEE
Confidence 6766666543 23 26999999999999999987754 5666 5788999999999999999
Q ss_pred EecccccccccccCcceecccHHHHHHHHHHHHHHHhc
Q 013914 294 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 331 (434)
Q Consensus 294 a~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 331 (434)
|+|||+..+ .++..|+.+|+.||.+|..
T Consensus 420 A~GD~~~g~----------~~v~~Ai~~G~~AA~~I~~ 447 (449)
T TIGR01316 420 AGGDIILGA----------ATVIRAMGQGKRAAKSINE 447 (449)
T ss_pred EecCCCCCc----------HHHHHHHHHHHHHHHHHHh
Confidence 999998643 4678899999999999864
No 55
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.2e-34 Score=281.47 Aligned_cols=290 Identities=22% Similarity=0.241 Sum_probs=207.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
+.+||+||||||||++||.+|+++|++ |+|+|+.+..+ +++. ..+|.+... .........++++
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~---V~v~e~~~~~G--------G~l~----~gip~~~l~-~~~~~~~~~~~~~ 202 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYD---VTIFEALHEPG--------GVLV----YGIPEFRLP-KETVVKKEIENIK 202 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCe---EEEEecCCCCC--------Ceee----ecCCCccCC-ccHHHHHHHHHHH
Confidence 358999999999999999999999987 99999876421 1110 011111100 0001122345677
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEccCC-cEEEcceEEEecCC-CcccccCCCCCCCCCCCeEEecCHHHHHHHHHHH---
Q 013914 84 EKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGS-TVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI--- 158 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~lvlAtG~-~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l--- 158 (434)
+.|++++.++.+ .+.+.+.+. ..+.||+|+||||+ .|+.++ ++|.+.+++++..++.+...+....
T Consensus 203 ~~gv~i~~~~~v------~~~v~~~~~~~~~~~d~viiAtGa~~~~~l~---ipG~~~~gV~~~~~~l~~~~~~~~~~~~ 273 (464)
T PRK12831 203 KLGVKIETNVVV------GKTVTIDELLEEEGFDAVFIGSGAGLPKFMG---IPGENLNGVFSANEFLTRVNLMKAYKPE 273 (464)
T ss_pred HcCCEEEcCCEE------CCcCCHHHHHhccCCCEEEEeCCCCCCCCCC---CCCcCCcCcEEHHHHHHHHHhccccccc
Confidence 789999998644 223333332 23579999999998 587776 6888878888766554443221100
Q ss_pred ---HhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc-cCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec
Q 013914 159 ---KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 234 (434)
Q Consensus 159 ---~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~-~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~ 234 (434)
....+++++|||+|++|+|+|..+.+.|.+|+++.+.+. .++ ... ..+ +.+++.||++++++.+.++..+
T Consensus 274 ~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~----a~~-~e~-~~a~~eGV~i~~~~~~~~i~~~ 347 (464)
T PRK12831 274 YDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELP----ARV-EEV-HHAKEEGVIFDLLTNPVEILGD 347 (464)
T ss_pred ccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCC----CCH-HHH-HHHHHcCCEEEecccceEEEec
Confidence 012578999999999999999999999999999998653 222 111 111 3457789999999999999865
Q ss_pred CCCcEEEEEeC------------------CCc--EEECCEEEEcccCccChhhhhc--cccc-cCCcEEeCCC-CCCCCC
Q 013914 235 ADGEVKEVKLK------------------DGR--TLEADIVVVGVGGRPLISLFKG--QVAE-NKGGIETDDF-FKTSAD 290 (434)
Q Consensus 235 ~~g~v~~v~~~------------------~g~--~~~~D~vi~a~G~~p~~~~~~~--~~~~-~~g~i~vd~~-~~t~~~ 290 (434)
++|++..+++. +|+ ++++|.||+|+|+.|++.++.. ++.. .+|.|.||++ ++|+.|
T Consensus 348 ~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~p 427 (464)
T PRK12831 348 ENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKE 427 (464)
T ss_pred CCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCccCCC
Confidence 56776665542 222 6999999999999999987753 5655 5688999998 999999
Q ss_pred cEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCC
Q 013914 291 DVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG 334 (434)
Q Consensus 291 ~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 334 (434)
+|||+|||+..+ ..+..|+.+|+.||.+|...+.
T Consensus 428 gVfAaGD~~~g~----------~~v~~Ai~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 428 GVFAGGDAVTGA----------ATVILAMGAGKKAAKAIDEYLS 461 (464)
T ss_pred CEEEeCCCCCCc----------hHHHHHHHHHHHHHHHHHHHhc
Confidence 999999998754 4578899999999999987654
No 56
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=100.00 E-value=6.5e-32 Score=262.44 Aligned_cols=388 Identities=25% Similarity=0.260 Sum_probs=296.1
Q ss_pred EEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhcCc
Q 013914 8 YVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGI 87 (434)
Q Consensus 8 vvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 87 (434)
++|||+|++|+++|..+++.. +..+++++..+....|.++.++.............. .... +..+.++
T Consensus 1 ivivG~g~aG~~aa~~l~~~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~i 68 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLL-LAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLR----------YPPR-FNRATGI 68 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcC-CCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhc----------ccch-hHHhhCC
Confidence 589999999999999988875 367799999988777777766554443322211110 1111 2246689
Q ss_pred EEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEE
Q 013914 88 ELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAV 167 (434)
Q Consensus 88 ~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ 167 (434)
++..++.+..+++..+.+.+.++ .+.||+|++|||++|..++ +.....+++.+...+...++..... .++++
T Consensus 69 ~~~~~~~v~~id~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~ 140 (415)
T COG0446 69 DVRTGTEVTSIDPENKVVLLDDG-EIEYDYLVLATGARPRPPP-----ISDWEGVVTLRLREDAEALKGGAEP--PKDVV 140 (415)
T ss_pred EEeeCCEEEEecCCCCEEEECCC-cccccEEEEcCCCcccCCC-----ccccCceEEECCHHHHHHHHHHHhc--cCeEE
Confidence 99999999999999999999888 8999999999999998765 3445678999999999988877653 58999
Q ss_pred EECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE-EEeCC
Q 013914 168 VVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE-VKLKD 246 (434)
Q Consensus 168 ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~-v~~~~ 246 (434)
|+|+|++|+|+|..+.+.|.+|++++..++++++.+.+++.+.+.+.++++||+++++..+.+++...+..... +...+
T Consensus 141 vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~ 220 (415)
T COG0446 141 VVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGID 220 (415)
T ss_pred EECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeC
Confidence 99999999999999999999999999999999873228899999999999999999999999998732221211 67788
Q ss_pred CcEEECCEEEEcccCccChhhhhccc--cc-cCCcEEeCCCCCCC-CCcEEEecccccccccccCcceecccHHHHHHHH
Q 013914 247 GRTLEADIVVVGVGGRPLISLFKGQV--AE-NKGGIETDDFFKTS-ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSA 322 (434)
Q Consensus 247 g~~~~~D~vi~a~G~~p~~~~~~~~~--~~-~~g~i~vd~~~~t~-~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g 322 (434)
+..+++|.+++++|.+||+.+.+... .. .+|++.||++++|+ .++|||+|||+..+....+.....+++..|..++
T Consensus 221 ~~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~ 300 (415)
T COG0446 221 GEEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAG 300 (415)
T ss_pred CcEEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhh
Confidence 88999999999999999988887654 33 67889999999997 9999999999998876544555668999999999
Q ss_pred HHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCCC-CE-------EEEcCCCcc--cCCCc--EEEEE--EeC
Q 013914 323 EQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG-DT-------VLFGDNDLA--SATHK--FGTYW--IKD 388 (434)
Q Consensus 323 ~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~-~~-------~~~~~~~~~--~~~~~--~~~~~--~~~ 388 (434)
+.++.++.+. . ......++.++..++......|.+.. +. ...+..... .+... ..+.. ...
T Consensus 301 ~i~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (415)
T COG0446 301 RIAAENIAGA-L----RIPGLLGTVISDVGDLCAASTGLTEGKERGIDVVLVVSGGKDPRAHLYPGAELVGIKLVGDADT 375 (415)
T ss_pred HHHHHHhccc-c----ccccccCceEEEEcCeEEEEecCCcccccceeeeEEEeccCcccccccCCCCeEEEEEEEcCcc
Confidence 9999999875 1 34456778888889988888887764 11 111111111 11111 22222 267
Q ss_pred CEEEEEEEecCCHHHHHHHHHHHHcCCCCCChh
Q 013914 389 GKVVGVFLESGTPEENKAIAKVARVQPSVESLD 421 (434)
Q Consensus 389 ~~ilG~~~~g~~~~~~~~~~~~i~~~~~~~~~~ 421 (434)
++++|++. -.....+..+..++..+.++.++.
T Consensus 376 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 407 (415)
T COG0446 376 GRILGGQE-LEVLKRIGALALAIGLGDTVAELD 407 (415)
T ss_pred cceehhhh-HHHHhhhhhhhhhhhhcCchhhhh
Confidence 88888887 222234578888888888887443
No 57
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=100.00 E-value=1.2e-32 Score=280.07 Aligned_cols=282 Identities=24% Similarity=0.317 Sum_probs=194.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
+.++|+||||||||++||.+|+++|++ |+|+|+.+..+. .+. ..+|.+... ........+++.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~---VtV~Ek~~~~GG--------~lr----~~IP~~Rlp--~evL~~die~l~ 600 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHP---VTVFEREENAGG--------VVK----NIIPQFRIP--AELIQHDIEFVK 600 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCe---EEEEecccccCc--------cee----eeccccccc--HHHHHHHHHHHH
Confidence 357999999999999999999999987 999999865321 110 012222110 000112335667
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcc-cccCCCCCCCCCCCeEEecC-HHHHHHHHHHHHhC
Q 013914 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL-RLTDFGVEGADAKNIFYLRE-IDDADKLVEAIKAK 161 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~-~~~~~~~~g~~~~~v~~~~~-~~~~~~~~~~l~~~ 161 (434)
+.|+++..++.+ .++ +.+.....||+||||||+.+. .++ ++|.+ .++++..+ +.+.......+ .
T Consensus 601 ~~GVe~~~gt~V-di~-------le~L~~~gYDaVILATGA~~~~~l~---IpG~~-~gV~saldfL~~~k~~~~~~--~ 666 (1019)
T PRK09853 601 AHGVKFEFGCSP-DLT-------VEQLKNEGYDYVVVAIGADKNGGLK---LEGGN-QNVIKALPFLEEYKNKGTAL--K 666 (1019)
T ss_pred HcCCEEEeCcee-EEE-------hhhheeccCCEEEECcCCCCCCCCC---CCCcc-CCceehHHHHHHHhhhcccc--c
Confidence 789999998665 222 223334569999999999853 333 56654 44553221 11111111111 1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhC-C-CeEEEEccCCc-cCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCc
Q 013914 162 KNGKAVVVGGGYIGLELSAALKIN-N-IDVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE 238 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~-g-~~v~lv~~~~~-~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~ 238 (434)
.+++|+|||+|++|+|+|..+.+. | .+|+++.+.+. .++. .+.+ +.+. .+.||++++.+.+.++.. +|+
T Consensus 667 ~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA-~~eE----le~A-leeGVe~~~~~~p~~I~~--dG~ 738 (1019)
T PRK09853 667 LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPA-WREE----YEEA-LEDGVEFKELLNPESFDA--DGT 738 (1019)
T ss_pred CCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccc-cHHH----HHHH-HHcCCEEEeCCceEEEEc--CCc
Confidence 478999999999999999998887 4 48999998763 3432 2333 3333 357999999988888863 332
Q ss_pred E----------------EEEEeCCCcEEECCEEEEcccCccChhhhhc-cccc-cCCcEEeCCCCCCCCCcEEEeccccc
Q 013914 239 V----------------KEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVAT 300 (434)
Q Consensus 239 v----------------~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~ 300 (434)
+ ..+...++.++++|.||+|+|.+|+++++.. ++.. .+|++.||+++||+.|+|||+|||+.
T Consensus 739 l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G~I~VDetlqTs~pgVFAaGD~a~ 818 (1019)
T PRK09853 739 LTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQR 818 (1019)
T ss_pred EEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhcCccccCCCCEEeCCCcccCCCCEEEEecccc
Confidence 2 2223334468999999999999999998854 5665 56889999999999999999999986
Q ss_pred ccccccCcceecccHHHHHHHHHHHHHHHhccCC
Q 013914 301 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG 334 (434)
Q Consensus 301 ~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 334 (434)
.+ ..+..|+.+|+.||++|++...
T Consensus 819 Gp----------~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 819 GP----------STIVAAIADARRAADAILSREG 842 (1019)
T ss_pred Cc----------hHHHHHHHHHHHHHHHHhhhcC
Confidence 54 4577899999999999987653
No 58
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=4.2e-33 Score=286.70 Aligned_cols=289 Identities=22% Similarity=0.255 Sum_probs=208.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
+.++|+||||||||++||.+|+++|++ |+|+|+.+... +++. ..+|.+... ........++++
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~---V~v~e~~~~~G--------G~l~----~gip~~rlp--~~~~~~~~~~l~ 492 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYD---VTVFEALHEIG--------GVLK----YGIPEFRLP--KKIVDVEIENLK 492 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCe---EEEEecCCCCC--------Ceee----ecCCCCCCC--HHHHHHHHHHHH
Confidence 357999999999999999999999987 99999975421 1111 011111110 000122335567
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCC-CcccccCCCCCCCCCCCeEEecCHHHHHHHHHHH----
Q 013914 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS-TVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI---- 158 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~-~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l---- 158 (434)
+.|++++.++.+ .+.+.+++.....||++|||||+ .|+.++ ++|.+.+++++..++.....+....
T Consensus 493 ~~gv~~~~~~~v------~~~v~~~~l~~~~ydavvlAtGa~~~~~l~---ipG~~~~gV~~~~~~l~~~~~~~~~~~~~ 563 (752)
T PRK12778 493 KLGVKFETDVIV------GKTITIEELEEEGFKGIFIASGAGLPNFMN---IPGENSNGVMSSNEYLTRVNLMDAASPDS 563 (752)
T ss_pred HCCCEEECCCEE------CCcCCHHHHhhcCCCEEEEeCCCCCCCCCC---CCCCCCCCcEEHHHHHHHHhhcccccccc
Confidence 789999988543 23444444445679999999999 577666 6888778888766554433221110
Q ss_pred --HhCCCCcEEEECCCHHHHHHHHHHHhCCCe-EEEEccCCcc-CCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec
Q 013914 159 --KAKKNGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 234 (434)
Q Consensus 159 --~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~-v~lv~~~~~~-~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~ 234 (434)
....+++++|||+|++|+|+|..+.+.|.+ |+++++.+.. ++. ...+ + +.+++.||++++++.+.++..+
T Consensus 564 ~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~-~~~e----~-~~~~~~GV~i~~~~~~~~i~~~ 637 (752)
T PRK12778 564 DTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPA-RLEE----V-KHAKEEGIEFLTLHNPIEYLAD 637 (752)
T ss_pred cCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHHH----H-HHHHHcCCEEEecCcceEEEEC
Confidence 012468999999999999999999999987 9999987542 222 1111 1 3467889999999999999775
Q ss_pred CCCcEEEEEeC---------CC-----------cEEECCEEEEcccCccChhhhhc--cccc-cCCcEEeCCCCCCCCCc
Q 013914 235 ADGEVKEVKLK---------DG-----------RTLEADIVVVGVGGRPLISLFKG--QVAE-NKGGIETDDFFKTSADD 291 (434)
Q Consensus 235 ~~g~v~~v~~~---------~g-----------~~~~~D~vi~a~G~~p~~~~~~~--~~~~-~~g~i~vd~~~~t~~~~ 291 (434)
++|++..+++. +| .++++|.||+|+|++|+..++.. ++.. .+|+|.||++++|+.|+
T Consensus 638 ~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~g 717 (752)
T PRK12778 638 EKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPG 717 (752)
T ss_pred CCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCCCCCCCC
Confidence 56776666542 22 25899999999999999876643 4555 56889999999999999
Q ss_pred EEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCC
Q 013914 292 VYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG 334 (434)
Q Consensus 292 iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 334 (434)
|||+|||+..+ ..+..|+.+|+.||.+|...+.
T Consensus 718 VfA~GD~~~g~----------~~vv~Av~~G~~AA~~I~~~L~ 750 (752)
T PRK12778 718 IYAGGDIVRGG----------ATVILAMGDGKRAAAAIDEYLS 750 (752)
T ss_pred EEEeCCccCCc----------HHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999754 4577899999999999986543
No 59
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=100.00 E-value=3.3e-32 Score=265.68 Aligned_cols=287 Identities=22% Similarity=0.240 Sum_probs=200.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++|+|||||+||+++|..|++.|++ |+|+|+++... +++.. .++.+... ........+++++
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~---V~lie~~~~~g--------G~l~~----gip~~~~~--~~~~~~~~~~l~~ 202 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYD---VTIFEARDKAG--------GLLRY----GIPEFRLP--KDIVDREVERLLK 202 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCe---EEEEccCCCCC--------cEeec----cCCCccCC--HHHHHHHHHHHHH
Confidence 57999999999999999999999886 99999986532 01100 01111000 0001223456677
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCC-cccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHh-CC
Q 013914 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA-KK 162 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~-~~ 162 (434)
.+++++.++.+. +.+.+.+. .+.||+||+|||+. |+.++ ++|.+.+++++...+............ ..
T Consensus 203 ~gv~~~~~~~v~------~~v~~~~~-~~~~d~vvlAtGa~~~~~~~---i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~ 272 (457)
T PRK11749 203 LGVEIRTNTEVG------RDITLDEL-RAGYDAVFIGTGAGLPRFLG---IPGENLGGVYSAVDFLTRVNQAVADYDLPV 272 (457)
T ss_pred cCCEEEeCCEEC------CccCHHHH-HhhCCEEEEccCCCCCCCCC---CCCccCCCcEEHHHHHHHHhhccccccCCC
Confidence 899999886541 22333333 37899999999985 55555 677666677754333222111000001 14
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCcc-CCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEE
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 240 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~-~v~lv~~~~~~-~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~ 240 (434)
+++++|||+|++|+|+|..+.+.|. +|+++.+.+.. ++. .. ...+.+++.||++++++.+.++..+ ++.+.
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~--~~----~~~~~~~~~GV~i~~~~~v~~i~~~-~~~~~ 345 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPA--SE----EEVEHAKEEGVEFEWLAAPVEILGD-EGRVT 345 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCC--CH----HHHHHHHHCCCEEEecCCcEEEEec-CCceE
Confidence 7899999999999999999999997 89999986542 332 11 2345678899999999999999863 33323
Q ss_pred EEEeC-------------------CCcEEECCEEEEcccCccChhhhhc--cccc-cCCcEEeCC-CCCCCCCcEEEecc
Q 013914 241 EVKLK-------------------DGRTLEADIVVVGVGGRPLISLFKG--QVAE-NKGGIETDD-FFKTSADDVYAVGD 297 (434)
Q Consensus 241 ~v~~~-------------------~g~~~~~D~vi~a~G~~p~~~~~~~--~~~~-~~g~i~vd~-~~~t~~~~iya~GD 297 (434)
++++. +++++++|.||+|+|++|+..++.. ++.. .+|+|.||+ +++|++|+|||+||
T Consensus 346 ~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD 425 (457)
T PRK11749 346 GVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGD 425 (457)
T ss_pred EEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCC
Confidence 33321 2347999999999999999877642 4555 578999998 89999999999999
Q ss_pred cccccccccCcceecccHHHHHHHHHHHHHHHhccCCC
Q 013914 298 VATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 335 (434)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 335 (434)
|+..+ ..+..|..+|+.||.+|...+.+
T Consensus 426 ~~~~~----------~~~~~A~~~G~~aA~~I~~~l~g 453 (457)
T PRK11749 426 IVTGA----------ATVVWAVGDGKDAAEAIHEYLEG 453 (457)
T ss_pred cCCCc----------hHHHHHHHHHHHHHHHHHHHHhc
Confidence 99542 46788999999999999876654
No 60
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=100.00 E-value=9.7e-32 Score=278.13 Aligned_cols=288 Identities=19% Similarity=0.189 Sum_probs=205.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++|+|||||||||+||.+|++.|++ |+|+|+.+..+ +++. ..+|.+.... .......+.++.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~---VtVfE~~~~~G--------G~l~----yGIP~~rlp~--~vi~~~i~~l~~ 368 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFP---VTVFEAFHDLG--------GVLR----YGIPEFRLPN--QLIDDVVEKIKL 368 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCe---EEEEeeCCCCC--------ceEE----ccCCCCcChH--HHHHHHHHHHHh
Confidence 58999999999999999999999987 99999986422 1111 1123222110 001223455677
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCC-cccccCCCCCCCCCCCeEEecCHHHHHHHHHHH-----
Q 013914 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEAI----- 158 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l----- 158 (434)
.|++++.++.+ .+.+.+++.....||+++||||+. |+.++ +||.+.+++++..++.....+....
T Consensus 369 ~Gv~f~~n~~v------G~dit~~~l~~~~yDAV~LAtGA~~pr~l~---IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~ 439 (944)
T PRK12779 369 LGGRFVKNFVV------GKTATLEDLKAAGFWKIFVGTGAGLPTFMN---VPGEHLLGVMSANEFLTRVNLMRGLDDDYE 439 (944)
T ss_pred hcCeEEEeEEe------ccEEeHHHhccccCCEEEEeCCCCCCCcCC---CCCCcCcCcEEHHHHHHHHHhhcccccccc
Confidence 89999887443 345666555556799999999994 77666 7888888898766655443322111
Q ss_pred ---HhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc-cCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec
Q 013914 159 ---KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 234 (434)
Q Consensus 159 ---~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~-~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~ 234 (434)
....+++|+|||+|.+|+++|..+.+.|.+|+++.+.+. .++ .. ...+.. ..+.||+++++..++++..+
T Consensus 440 ~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mp----a~-~~e~~~-a~eeGV~~~~~~~p~~i~~d 513 (944)
T PRK12779 440 TPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMP----AR-VEELHH-ALEEGINLAVLRAPREFIGD 513 (944)
T ss_pred ccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCccccc----cc-HHHHHH-HHHCCCEEEeCcceEEEEec
Confidence 112468999999999999999999999999999988753 222 11 122323 34679999999999999764
Q ss_pred CC-CcEEEEEe---------C--------CC--cEEECCEEEEcccCccChhhhhc--cccc-cCCcEEeCC-CCCCCCC
Q 013914 235 AD-GEVKEVKL---------K--------DG--RTLEADIVVVGVGGRPLISLFKG--QVAE-NKGGIETDD-FFKTSAD 290 (434)
Q Consensus 235 ~~-g~v~~v~~---------~--------~g--~~~~~D~vi~a~G~~p~~~~~~~--~~~~-~~g~i~vd~-~~~t~~~ 290 (434)
++ +.+..+++ . +| .++++|.||+|+|+.|+..+... ++.. .+|.|.||+ +++|+.|
T Consensus 514 ~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~p 593 (944)
T PRK12779 514 DHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIK 593 (944)
T ss_pred CCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCccCCC
Confidence 32 34544432 1 22 36999999999999999765433 4555 578899997 5899999
Q ss_pred cEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCC
Q 013914 291 DVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG 334 (434)
Q Consensus 291 ~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 334 (434)
+|||+|||+..+ .++..|+.+|+.||.+|...+.
T Consensus 594 gVFAaGD~~~G~----------~~vv~Ai~eGr~AA~~I~~~L~ 627 (944)
T PRK12779 594 GVYSGGDAARGG----------STAIRAAGDGQAAAKEIVGEIP 627 (944)
T ss_pred CEEEEEcCCCCh----------HHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999754 4578899999999999976543
No 61
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=1.2e-31 Score=253.22 Aligned_cols=290 Identities=23% Similarity=0.286 Sum_probs=199.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
..++|+|||+|++|+++|..|++.|.+ |+++|+.+.... ++... .+.+.. .........+.+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~~gg--------~~~~~----~~~~~~--~~~~~~~~~~~l~ 79 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYE---VHVYDKLPEPGG--------LMLFG----IPEFRI--PIERVREGVKELE 79 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCc---EEEEeCCCCCCc--------eeeec----Cccccc--CHHHHHHHHHHHH
Confidence 357999999999999999999999886 999999865321 11000 000000 0000011233455
Q ss_pred hcCcEEEcCCeeEEEEC----CCC-----EEEccCCcEEEcceEEEecCC-CcccccCCCCCCCCCCCeEEecCHHHHHH
Q 013914 84 EKGIELILSTEIVRADI----ASK-----TLLSATGLIFKYQILVIATGS-TVLRLTDFGVEGADAKNIFYLREIDDADK 153 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~----~~~-----~v~~~~~~~~~~d~lvlAtG~-~~~~~~~~~~~g~~~~~v~~~~~~~~~~~ 153 (434)
+.+++++.++.+..++. ... .+..+ +..+.||+||||||+ .|+.|+ +||.+.+++++.. .....
T Consensus 80 ~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~lviAtGs~~~~~~~---ipg~~~~~v~~~~--~~~~~ 153 (352)
T PRK12770 80 EAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLE-ELVKKYDAVLIATGTWKSRKLG---IPGEDLPGVYSAL--EYLFR 153 (352)
T ss_pred hCCeEEecCcEEeeccccccccccccccccCCHH-HHHhhCCEEEEEeCCCCCCcCC---CCCccccCceeHH--HHHHH
Confidence 56899998877755432 011 11111 124789999999999 466666 5776666776542 22222
Q ss_pred HHHH---------HHhCCCCcEEEECCCHHHHHHHHHHHhCCCe-EEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEE
Q 013914 154 LVEA---------IKAKKNGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 223 (434)
Q Consensus 154 ~~~~---------l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~-v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~ 223 (434)
+... .....+++++|+|+|++|+|+|..|...|.+ |+++.+.+..... . .....+.|+++||+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~-~----~~~~~~~l~~~gi~i~ 228 (352)
T PRK12770 154 IRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAP-A----GKYEIERLIARGVEFL 228 (352)
T ss_pred hhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCC-C----CHHHHHHHHHcCCEEe
Confidence 2211 0011258999999999999999999999987 9999876543221 1 1334456889999999
Q ss_pred cCCeEEEEEecCCCcEEEEEe--------------------CCCcEEECCEEEEcccCccChhhhh--ccccc-cCCcEE
Q 013914 224 KGTVAVGFTTNADGEVKEVKL--------------------KDGRTLEADIVVVGVGGRPLISLFK--GQVAE-NKGGIE 280 (434)
Q Consensus 224 ~~~~v~~i~~~~~g~v~~v~~--------------------~~g~~~~~D~vi~a~G~~p~~~~~~--~~~~~-~~g~i~ 280 (434)
+++.+.+++. ++++..+++ .+++++++|.+++++|++|++.+.. .++.+ .+|++.
T Consensus 229 ~~~~v~~i~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~ 306 (352)
T PRK12770 229 ELVTPVRIIG--EGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIV 306 (352)
T ss_pred eccCceeeec--CCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEe
Confidence 9999999875 344434432 1234799999999999999988765 35555 567899
Q ss_pred eCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccC
Q 013914 281 TDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 281 vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
||++++|+.|+|||+|||+..+ ..+..|..+|+.||.+|...+
T Consensus 307 vd~~~~t~~~~vyaiGD~~~~~----------~~~~~A~~~g~~aa~~i~~~l 349 (352)
T PRK12770 307 VDEKHMTSREGVFAAGDVVTGP----------SKIGKAIKSGLRAAQSIHEWL 349 (352)
T ss_pred eCCCcccCCCCEEEEcccccCc----------chHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998754 457789999999999987654
No 62
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=100.00 E-value=6.3e-32 Score=242.68 Aligned_cols=295 Identities=21% Similarity=0.348 Sum_probs=216.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
++++|||+|+|.+|.+.+..|....++ |++|++..++.|. |.+...-...-. +.+. .+.......
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~Yd---V~vVSPRnyFlFT-PLLpS~~vGTve---~rSI--------vEPIr~i~r 118 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYD---VTVVSPRNYFLFT-PLLPSTTVGTVE---LRSI--------VEPIRAIAR 118 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccc---eEEeccccceEEe-eccCCcccccee---ehhh--------hhhHHHHhh
Confidence 468999999999999999888876555 9999999875543 211110000000 0000 111122222
Q ss_pred h--cCcEEEcCCeeEEEECCCCEEEc----cCC----cEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHH
Q 013914 84 E--KGIELILSTEIVRADIASKTLLS----ATG----LIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADK 153 (434)
Q Consensus 84 ~--~~v~~~~~~~v~~i~~~~~~v~~----~~~----~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~ 153 (434)
. .++.++. .+.+.+|++.+.|++ .++ ..+.|||||+|+|+.++.+. +||.. .+-+.++...++++
T Consensus 119 ~k~~~~~y~e-Aec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFg---ipGV~-e~~~FLKEv~dAqe 193 (491)
T KOG2495|consen 119 KKNGEVKYLE-AECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFG---IPGVE-ENAHFLKEVEDAQE 193 (491)
T ss_pred ccCCCceEEe-cccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCC---CCchh-hchhhhhhhhHHHH
Confidence 2 2566766 488999999998765 233 36899999999999998777 57654 55667889999999
Q ss_pred HHHHHHhC---------------CCCcEEEECCCHHHHHHHHHHHhC--------------CCeEEEEccCCccCCccCC
Q 013914 154 LVEAIKAK---------------KNGKAVVVGGGYIGLELSAALKIN--------------NIDVSMVYPEPWCMPRLFT 204 (434)
Q Consensus 154 ~~~~l~~~---------------~~~~v~ViG~g~~~~e~a~~l~~~--------------g~~v~lv~~~~~~~~~~~~ 204 (434)
++..+-.+ +-.+++|||||++|+|+|.+|+.. -.+||+++..|.+++ +|+
T Consensus 194 IR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~-mFd 272 (491)
T KOG2495|consen 194 IRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILN-MFD 272 (491)
T ss_pred HHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHH-HHH
Confidence 87665321 224789999999999999999864 368999999999998 589
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCccChh--hhhccccc-cCCcE
Q 013914 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLIS--LFKGQVAE-NKGGI 279 (434)
Q Consensus 205 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g--~~~~~D~vi~a~G~~p~~~--~~~~~~~~-~~g~i 279 (434)
..+.++.++.+.+.||++..++.|+.+.. +-..+...+| +++++-+++|+||..|..- -+-..+.. .+.++
T Consensus 273 krl~~yae~~f~~~~I~~~~~t~Vk~V~~----~~I~~~~~~g~~~~iPYG~lVWatG~~~rp~~k~lm~~i~e~~rr~L 348 (491)
T KOG2495|consen 273 KRLVEYAENQFVRDGIDLDTGTMVKKVTE----KTIHAKTKDGEIEEIPYGLLVWATGNGPRPVIKDLMKQIDEQGRRGL 348 (491)
T ss_pred HHHHHHHHHHhhhccceeecccEEEeecC----cEEEEEcCCCceeeecceEEEecCCCCCchhhhhHhhcCCccCceee
Confidence 99999999999999999999999999864 2245555566 4789999999999776543 22222222 24489
Q ss_pred EeCCCCCC-CCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHh
Q 013914 280 ETDDFFKT-SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM 330 (434)
Q Consensus 280 ~vd~~~~t-~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 330 (434)
.||++||. +.+||||+|||+..+.. .++++.|.+||.++|+++-
T Consensus 349 ~vDE~LrV~G~~nvfAiGDca~~~~~-------~~tAQVA~QqG~yLAk~fn 393 (491)
T KOG2495|consen 349 AVDEWLRVKGVKNVFAIGDCADQRGL-------KPTAQVAEQQGAYLAKNFN 393 (491)
T ss_pred eeeceeeccCcCceEEeccccccccC-------ccHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999999943322 1578899999999999874
No 63
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=100.00 E-value=3.9e-31 Score=276.15 Aligned_cols=290 Identities=21% Similarity=0.212 Sum_probs=203.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++|+|||||||||+||.+|+++|++ |+|+|+.+..+ +++. ..+|.+.. .........+.+.+
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~---VtV~E~~~~~G--------G~l~----~gip~~rl--~~e~~~~~~~~l~~ 492 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVD---VTVYEALHVVG--------GVLQ----YGIPSFRL--PRDIIDREVQRLVD 492 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCCc--------ceee----ccCCccCC--CHHHHHHHHHHHHH
Confidence 57999999999999999999999987 99999986432 1111 11222110 00011234456778
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCCc-EEEcceEEEecCCC-cccccCCCCCCCCCCCeEEecCHHHHHHHHHH--H--
Q 013914 85 KGIELILSTEIVRADIASKTLLSATGL-IFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEA--I-- 158 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~-~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~--l-- 158 (434)
.|+++..++.+ .+.+...+-. ...||+||||||+. |+.++ +||.+.+++++..++.....+... .
T Consensus 493 ~Gv~~~~~~~v------g~~~~~~~l~~~~~yDaViIATGa~~pr~l~---IpG~~l~gV~~a~~fL~~~~~~~~~~~~~ 563 (1006)
T PRK12775 493 IGVKIETNKVI------GKTFTVPQLMNDKGFDAVFLGVGAGAPTFLG---IPGEFAGQVYSANEFLTRVNLMGGDKFPF 563 (1006)
T ss_pred CCCEEEeCCcc------CCccCHHHHhhccCCCEEEEecCCCCCCCCC---CCCcCCCCcEEHHHHHHHHHhcCcccccc
Confidence 89999988432 1222222211 24699999999994 77766 688777888876555443332100 0
Q ss_pred ---HhCCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec
Q 013914 159 ---KAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 234 (434)
Q Consensus 159 ---~~~~~~~v~ViG~g~~~~e~a~~l~~~g~-~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~ 234 (434)
....+++|+|||+|++|+++|..+.+.|. .|+++.+....- ++... .-.+.+++.||++++++.+.++..+
T Consensus 564 ~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~e---m~a~~--~e~~~a~eeGI~~~~~~~p~~i~~~ 638 (1006)
T PRK12775 564 LDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAE---APARI--EEIRHAKEEGIDFFFLHSPVEIYVD 638 (1006)
T ss_pred ccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCccc---CCCCH--HHHHHHHhCCCEEEecCCcEEEEeC
Confidence 01257999999999999999999999997 488887653321 11111 1124577899999999999999765
Q ss_pred CCCcEEEEEeC-----------------CC--cEEECCEEEEcccCccChhhhhc--cccc-cCCcEEeCC-----CCCC
Q 013914 235 ADGEVKEVKLK-----------------DG--RTLEADIVVVGVGGRPLISLFKG--QVAE-NKGGIETDD-----FFKT 287 (434)
Q Consensus 235 ~~g~v~~v~~~-----------------~g--~~~~~D~vi~a~G~~p~~~~~~~--~~~~-~~g~i~vd~-----~~~t 287 (434)
++|++.++++. +| .++++|.||+|+|++|++.++.. ++.+ .+|.|.+|+ +++|
T Consensus 639 ~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~T 718 (1006)
T PRK12775 639 AEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQST 718 (1006)
T ss_pred CCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCC
Confidence 67777666542 12 25899999999999999876643 4555 568899996 7899
Q ss_pred CCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCC
Q 013914 288 SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 335 (434)
Q Consensus 288 ~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 335 (434)
++|+|||+|||+..+ .++..|+.+|+.||.+|...+.+
T Consensus 719 s~pgVFAaGDv~~G~----------~~vv~Ai~~Gr~AA~~I~~~L~~ 756 (1006)
T PRK12775 719 NLPGVFAGGDIVTGG----------ATVILAMGAGRRAARSIATYLRL 756 (1006)
T ss_pred CCCCEEEecCcCCCc----------cHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999998654 45778999999999998766544
No 64
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.98 E-value=5.8e-31 Score=257.22 Aligned_cols=293 Identities=22% Similarity=0.267 Sum_probs=198.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++|+|||+|+||+++|..|++.|++ |+|+|+.+... +++. ..++.+... ........+++.+
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~---V~vie~~~~~G--------G~l~----~gip~~~~~--~~~~~~~~~~~~~ 205 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHK---VTVFERADRIG--------GLLR----YGIPDFKLE--KEVIDRRIELMEA 205 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCc---EEEEecCCCCC--------ceee----ecCCcccCC--HHHHHHHHHHHHh
Confidence 47999999999999999999999987 99999986532 1111 011111100 0001123456777
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCC-cccccCCCCCCCCCCCeEEecCHHHHH--HHHHH--H-
Q 013914 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDAD--KLVEA--I- 158 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~--~~~~~--l- 158 (434)
.|++++.++.+. .+.. . +.....||++++|||+. ++.++ ++|.+..++++..++.... .+... .
T Consensus 206 ~gv~~~~~~~v~-~~~~-----~-~~~~~~~d~vvlAtGa~~~~~l~---ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~ 275 (471)
T PRK12810 206 EGIEFRTNVEVG-KDIT-----A-EELLAEYDAVFLGTGAYKPRDLG---IPGRDLDGVHFAMDFLIQNTRRVLGDETEP 275 (471)
T ss_pred CCcEEEeCCEEC-CcCC-----H-HHHHhhCCEEEEecCCCCCCcCC---CCCccCCCcEEHHHHHHHHHhhhccccccc
Confidence 899999886542 1111 1 11135799999999997 65555 6887777887643322110 00000 0
Q ss_pred -HhCCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCccCCccCCH----H-HHHHHHHHHHhcCcEEEcCCeEEEE
Q 013914 159 -KAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWCMPRLFTA----D-IAAFYEGYYANKGIKIIKGTVAVGF 231 (434)
Q Consensus 159 -~~~~~~~v~ViG~g~~~~e~a~~l~~~g~-~v~lv~~~~~~~~~~~~~----~-~~~~~~~~l~~~GV~~~~~~~v~~i 231 (434)
....+++++|||+|++|+|+|..+.+.|. +|++++..+......++. . ......+.+++.||++++++.++++
T Consensus 276 ~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i 355 (471)
T PRK12810 276 FISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEF 355 (471)
T ss_pred cccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEE
Confidence 01257899999999999999999888885 788776554332211000 0 0111345678889999999999999
Q ss_pred EecCCCcEEEEEeC-----CC---------cEEECCEEEEcccCccCh-hhhhc-cccc-cCCcEEeC-CCCCCCCCcEE
Q 013914 232 TTNADGEVKEVKLK-----DG---------RTLEADIVVVGVGGRPLI-SLFKG-QVAE-NKGGIETD-DFFKTSADDVY 293 (434)
Q Consensus 232 ~~~~~g~v~~v~~~-----~g---------~~~~~D~vi~a~G~~p~~-~~~~~-~~~~-~~g~i~vd-~~~~t~~~~iy 293 (434)
.. +++++..|++. +| .++++|.||+|+|.+|+. .+++. ++.. .+|.+.+| ++++|+.|+||
T Consensus 356 ~~-~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVf 434 (471)
T PRK12810 356 EG-ENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVF 434 (471)
T ss_pred Ec-cCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEE
Confidence 75 46776655432 22 479999999999999985 35543 4555 57889998 79999999999
Q ss_pred EecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCC
Q 013914 294 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 335 (434)
Q Consensus 294 a~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 335 (434)
|+|||+..+ ..+..|..+|+.||.+|...+.+
T Consensus 435 a~GD~~~g~----------~~~~~Av~~G~~AA~~i~~~L~g 466 (471)
T PRK12810 435 AAGDMRRGQ----------SLVVWAIAEGRQAARAIDAYLMG 466 (471)
T ss_pred EccccCCCc----------hhHHHHHHHHHHHHHHHHHHHhc
Confidence 999999743 35778999999999999877654
No 65
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.97 E-value=7e-30 Score=261.47 Aligned_cols=280 Identities=20% Similarity=0.251 Sum_probs=187.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++|+||||||||++||.+|++.|++ |+|+|+++..+. .+.. .+|.+... ........+++.+
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~---VTV~Ek~~~lGG--------~l~~----~IP~~rlp--~e~l~~~ie~l~~ 599 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHP---VTVFEKKEKPGG--------VVKN----IIPEFRIS--AESIQKDIELVKF 599 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCe---EEEEecccccCc--------eeee----cccccCCC--HHHHHHHHHHHHh
Confidence 47999999999999999999999987 999999865321 1100 01111100 0001123355667
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHH-HhCCC
Q 013914 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI-KAKKN 163 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l-~~~~~ 163 (434)
.|++++.+... .+.+.+.....||+|+||||+.+..+. +++|.. .+++. ..+....+.... ....+
T Consensus 600 ~GVe~~~g~~~--------d~~ve~l~~~gYDaVIIATGA~~~~~l--~I~G~~-~~v~~--avefL~~~~~~~~~~~~G 666 (1012)
T TIGR03315 600 HGVEFKYGCSP--------DLTVAELKNQGYKYVILAIGAWKHGPL--RLEGGG-ERVLK--SLEFLRAFKEGPTINPLG 666 (1012)
T ss_pred cCcEEEEeccc--------ceEhhhhhcccccEEEECCCCCCCCCC--CcCCCC-cceee--HHHHHHHhhccccccccC
Confidence 79998886321 122223334679999999999853322 256543 34432 222222221110 01258
Q ss_pred CcEEEECCCHHHHHHHHHHHhC-CC-eEEEEccCCc-cCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEE
Q 013914 164 GKAVVVGGGYIGLELSAALKIN-NI-DVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 240 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~-g~-~v~lv~~~~~-~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~ 240 (434)
++|+|||+|++|+|+|..+.+. |. +|+++.+.+. .++. .+.+ +.+. .+.||++++...+.++.. +.+.
T Consensus 667 K~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa-~~eE----l~~a-leeGVe~~~~~~p~~I~~---g~l~ 737 (1012)
T TIGR03315 667 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPA-SREE----LEEA-LEDGVDFKELLSPESFED---GTLT 737 (1012)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCcccccc-CHHH----HHHH-HHcCCEEEeCCceEEEEC---CeEE
Confidence 9999999999999999998886 74 8999998763 3332 2333 3333 357999999888877762 2221
Q ss_pred EE--------------EeCCCc--EEECCEEEEcccCccChhhhhc-cccc-cCCcEEeCCC-CCCCCCcEEEecccccc
Q 013914 241 EV--------------KLKDGR--TLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDF-FKTSADDVYAVGDVATF 301 (434)
Q Consensus 241 ~v--------------~~~~g~--~~~~D~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~-~~t~~~~iya~GD~~~~ 301 (434)
.. ...+|+ ++++|.||+|+|.+|+.++++. ++.. .+|++.||++ ++|+.|+|||+|||+..
T Consensus 738 v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~G 817 (1012)
T TIGR03315 738 CEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRG 817 (1012)
T ss_pred EEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCC
Confidence 11 112343 6899999999999999998854 5665 5688999986 89999999999999865
Q ss_pred cccccCcceecccHHHHHHHHHHHHHHHhccC
Q 013914 302 PMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 302 ~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
+ ..+..|+.+|+.||.+|++..
T Consensus 818 P----------~tVv~AIaqGr~AA~nIl~~~ 839 (1012)
T TIGR03315 818 P----------ATIVEAIADGRKAANAILSRE 839 (1012)
T ss_pred c----------cHHHHHHHHHHHHHHHHhccc
Confidence 4 467889999999999998754
No 66
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.97 E-value=7.8e-30 Score=257.42 Aligned_cols=287 Identities=20% Similarity=0.266 Sum_probs=194.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++|+|||+|+||+++|..|++.|++ |+|+|+++..+ . .+.. .++.+... ........+.+.+
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~---Vtv~e~~~~~G---G-----~l~~----gip~~~~~--~~~~~~~~~~l~~ 255 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHD---VTIFDANEQAG---G-----MMRY----GIPRFRLP--ESVIDADIAPLRA 255 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCC---c-----eeee----cCCCCCCC--HHHHHHHHHHHHH
Confidence 47999999999999999999999987 99999986532 1 1110 01111100 0001122345667
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcc-cccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCC
Q 013914 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL-RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN 163 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~-~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~ 163 (434)
.|+++..++.+ .++ +.+.+. ...||++++|||+.+. .++ ++|.+..++++..++........ ....+
T Consensus 256 ~Gv~i~~~~~v-~~d-----v~~~~~-~~~~DaVilAtGa~~~~~~~---ipG~~~~gv~~~~~~l~~~~~~~--~~~~g 323 (652)
T PRK12814 256 MGAEFRFNTVF-GRD-----ITLEEL-QKEFDAVLLAVGAQKASKMG---IPGEELPGVISGIDFLRNVALGT--ALHPG 323 (652)
T ss_pred cCCEEEeCCcc-cCc-----cCHHHH-HhhcCEEEEEcCCCCCCCCC---CCCcCcCCcEeHHHHHHHhhcCC--cccCC
Confidence 89999887543 211 222221 2359999999999863 444 67777677764322211110000 11257
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCc-cCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcE--
Q 013914 164 GKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEV-- 239 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~-~v~lv~~~~~-~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v-- 239 (434)
++++|||+|++|+|+|..+.+.|. +|+++.+.+. .++. .+.+ +.+ +.+.||++++++.+.++... ++.+
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa-~~~e----i~~-a~~eGV~i~~~~~~~~i~~~-~~~~~v 396 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPA-NRAE----IEE-ALAEGVSLRELAAPVSIERS-EGGLEL 396 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHHH----HHH-HHHcCCcEEeccCcEEEEec-CCeEEE
Confidence 999999999999999999999986 6999998764 3442 2222 223 24579999999999998763 3322
Q ss_pred EEEEeC---------------CCc--EEECCEEEEcccCccChhhhhc-cccc-cCCcEEeCC-CCCCCCCcEEEecccc
Q 013914 240 KEVKLK---------------DGR--TLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDD-FFKTSADDVYAVGDVA 299 (434)
Q Consensus 240 ~~v~~~---------------~g~--~~~~D~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~-~~~t~~~~iya~GD~~ 299 (434)
..+.+. +|+ ++++|.||+|+|+.|+++++.. ++.. .+|+|.||+ +++|+.|+|||+|||+
T Consensus 397 ~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~ 476 (652)
T PRK12814 397 TAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCV 476 (652)
T ss_pred EEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcC
Confidence 122221 222 5899999999999999988754 5665 568899997 6899999999999998
Q ss_pred cccccccCcceecccHHHHHHHHHHHHHHHhccCCCCc
Q 013914 300 TFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKT 337 (434)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~ 337 (434)
..+ .++..|+.+|+.||.+|...+.++.
T Consensus 477 ~g~----------~~v~~Ai~~G~~AA~~I~~~L~g~~ 504 (652)
T PRK12814 477 TGA----------DIAINAVEQGKRAAHAIDLFLNGKP 504 (652)
T ss_pred CCc----------hHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 654 4578899999999999987776643
No 67
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.97 E-value=2.3e-29 Score=245.01 Aligned_cols=285 Identities=21% Similarity=0.275 Sum_probs=198.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++|+|||+|++|+++|..|++.|++ |+++|+.+... +++.. .+|.+... ........+++++
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~---V~i~e~~~~~g--------G~l~~----gip~~~~~--~~~~~~~~~~~~~ 203 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQ---VVVFDRHPEIG--------GLLTF----GIPSFKLD--KAVLSRRREIFTA 203 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCCC--------ceeee----cCccccCC--HHHHHHHHHHHHH
Confidence 57999999999999999999999887 99999986522 11110 11211110 0001223466778
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCccc-ccCCCCCCCCCCCeEEecCHHHH--HHHHHH----
Q 013914 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLR-LTDFGVEGADAKNIFYLREIDDA--DKLVEA---- 157 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~-~~~~~~~g~~~~~v~~~~~~~~~--~~~~~~---- 157 (434)
.|++++.++.+.. .+...+ ....||++|+|||+.+.. ++ ++|.+.+++++..++... ..+...
T Consensus 204 ~Gv~~~~~~~v~~------~~~~~~-~~~~~D~vilAtGa~~~~~~~---i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~ 273 (467)
T TIGR01318 204 MGIEFHLNCEVGR------DISLDD-LLEDYDAVFLGVGTYRSMRGG---LPGEDAPGVLQALPFLIANTRQLMGLPESP 273 (467)
T ss_pred CCCEEECCCEeCC------ccCHHH-HHhcCCEEEEEeCCCCCCcCC---CCCcCCCCcEEHHHHHHHHHHHhcCCCccc
Confidence 8999998865521 122211 124799999999998743 34 788888888865432211 101000
Q ss_pred ---HHhCCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCcc-CCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEE
Q 013914 158 ---IKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232 (434)
Q Consensus 158 ---l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~-~v~lv~~~~~~-~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~ 232 (434)
+....+++++|+|+|++|+++|..+.+.|. +||++++.+.. ++. .+.+ .+.+++.||++++++.+.++.
T Consensus 274 ~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~-~~~e-----~~~~~~~GV~~~~~~~~~~i~ 347 (467)
T TIGR01318 274 EEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPG-SRRE-----VANAREEGVEFLFNVQPVYIE 347 (467)
T ss_pred cccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCC-CHHH-----HHHHHhcCCEEEecCCcEEEE
Confidence 001246899999999999999999999995 79999987653 332 2222 244678899999999999997
Q ss_pred ecCCCcEEEEEeC---------CC-----------cEEECCEEEEcccCccCh-hhhh-ccccc-cCCcEEeC----CCC
Q 013914 233 TNADGEVKEVKLK---------DG-----------RTLEADIVVVGVGGRPLI-SLFK-GQVAE-NKGGIETD----DFF 285 (434)
Q Consensus 233 ~~~~g~v~~v~~~---------~g-----------~~~~~D~vi~a~G~~p~~-~~~~-~~~~~-~~g~i~vd----~~~ 285 (434)
.+++|++.++++. +| .++++|.||+|+|++|+. .++. .++.. .+|++.|| .++
T Consensus 348 ~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~ 427 (467)
T TIGR01318 348 CDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPY 427 (467)
T ss_pred ECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCc
Confidence 6556666555441 12 368999999999999985 3333 34555 56889999 688
Q ss_pred CCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhcc
Q 013914 286 KTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 286 ~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 332 (434)
+|+.|+|||+|||+..+ ..+..|..+|+.||.+|...
T Consensus 428 ~T~~~gVfa~GD~~~~~----------~~~~~Ai~~G~~aA~~i~~~ 464 (467)
T TIGR01318 428 QTTNPKIFAGGDAVRGA----------DLVVTAVAEGRQAAQGILDW 464 (467)
T ss_pred cCCCCCEEEECCcCCCc----------cHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998754 35678999999999998754
No 68
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.97 E-value=5e-29 Score=252.76 Aligned_cols=287 Identities=18% Similarity=0.241 Sum_probs=197.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
+.++|+|||||||||++|..|++.|++ |+|+|+.+..+ +++.. .+|.+... ........++++
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~---V~V~E~~~~~G--------G~l~~----gip~~~l~--~~~~~~~~~~~~ 388 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVA---VTVYDRHPEIG--------GLLTF----GIPAFKLD--KSLLARRREIFS 388 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCC--------ceeee----cCCCccCC--HHHHHHHHHHHH
Confidence 357999999999999999999999987 99999986522 11111 11221110 000112345667
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcc-cccCCCCCCCCCCCeEEecCHH--HHHHHHH---H
Q 013914 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL-RLTDFGVEGADAKNIFYLREID--DADKLVE---A 157 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~-~~~~~~~~g~~~~~v~~~~~~~--~~~~~~~---~ 157 (434)
+.|+++..++.+.. .+...+. ...||++++|||+... .++ +++.+..+++...++. ....+.. .
T Consensus 389 ~~Gv~~~~~~~v~~------~i~~~~~-~~~~DavilAtGa~~~~~l~---i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~ 458 (654)
T PRK12769 389 AMGIEFELNCEVGK------DISLESL-LEDYDAVFVGVGTYRSMKAG---LPNEDAPGVYDALPFLIANTKQVMGLEEL 458 (654)
T ss_pred HCCeEEECCCEeCC------cCCHHHH-HhcCCEEEEeCCCCCCCCCC---CCCCCCCCeEEhHHHHHHHHhhhccCccc
Confidence 78999998865421 1111111 2469999999998643 344 6777777877542211 0001000 0
Q ss_pred ----HHhCCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCcc-CCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEE
Q 013914 158 ----IKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGF 231 (434)
Q Consensus 158 ----l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~-~v~lv~~~~~~-~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i 231 (434)
.....+++++|||+|++|+++|..+.+.|. +|+++.+.+.. ++. .+. ..+.+++.||++++++.++++
T Consensus 459 ~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~-~~~-----e~~~~~~~Gv~~~~~~~~~~i 532 (654)
T PRK12769 459 PEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPG-SKK-----EVKNAREEGANFEFNVQPVAL 532 (654)
T ss_pred cccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCC-CHH-----HHHHHHHcCCeEEeccCcEEE
Confidence 001246899999999999999999999986 79999887654 332 222 235578899999999999999
Q ss_pred EecCCCcEEEEEeC---------CC---------c--EEECCEEEEcccCccCh-hhhh-ccccc-cCCcEEeCC----C
Q 013914 232 TTNADGEVKEVKLK---------DG---------R--TLEADIVVVGVGGRPLI-SLFK-GQVAE-NKGGIETDD----F 284 (434)
Q Consensus 232 ~~~~~g~v~~v~~~---------~g---------~--~~~~D~vi~a~G~~p~~-~~~~-~~~~~-~~g~i~vd~----~ 284 (434)
..+++|++.++++. +| + ++++|.||+|+|+.|+. .+++ .++.+ .+|.|.||+ +
T Consensus 533 ~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~ 612 (654)
T PRK12769 533 ELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYR 612 (654)
T ss_pred EECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccC
Confidence 76556777666541 22 2 59999999999999985 3443 35666 578899986 5
Q ss_pred CCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccC
Q 013914 285 FKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 285 ~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
++|+.|+|||+||++..+ .++..|+.+|+.||.+|...+
T Consensus 613 ~~Ts~~gVfAaGD~~~g~----------~~vv~Ai~~Gr~AA~~I~~~L 651 (654)
T PRK12769 613 YQTSNPKIFAGGDAVRGA----------DLVVTAMAEGRHAAQGIIDWL 651 (654)
T ss_pred cccCCCCEEEcCCcCCCC----------cHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999998754 457889999999999997654
No 69
>PRK13984 putative oxidoreductase; Provisional
Probab=99.97 E-value=4.6e-29 Score=251.74 Aligned_cols=285 Identities=21% Similarity=0.269 Sum_probs=193.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
+.++|+|||+|+||+++|..|+++|++ |+|+|+++...- .+. ..++.+.. .........++++
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~---v~vie~~~~~gG--------~~~----~~i~~~~~--~~~~~~~~~~~~~ 344 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYE---VTVYESLSKPGG--------VMR----YGIPSYRL--PDEALDKDIAFIE 344 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCCc--------eEe----ecCCcccC--CHHHHHHHHHHHH
Confidence 357899999999999999999999987 999999865321 010 00111100 0000112345677
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCC-cccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHh--
Q 013914 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA-- 160 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~-- 160 (434)
+.|++++.++.+.. + +...+ ....||+||+|||+. |+.++ ++|.+..++++. .+....+...+..
T Consensus 345 ~~gv~~~~~~~v~~-~-----~~~~~-~~~~yD~vilAtGa~~~r~l~---i~G~~~~gv~~a--~~~l~~~~~~~~~~~ 412 (604)
T PRK13984 345 ALGVKIHLNTRVGK-D-----IPLEE-LREKHDAVFLSTGFTLGRSTR---IPGTDHPDVIQA--LPLLREIRDYLRGEG 412 (604)
T ss_pred HCCcEEECCCEeCC-c-----CCHHH-HHhcCCEEEEEcCcCCCccCC---CCCcCCcCeEeH--HHHHHHHHhhhccCC
Confidence 88999999866531 1 11111 135799999999987 45555 678776777643 3333333333221
Q ss_pred ---CCCCcEEEECCCHHHHHHHHHHHhCCC------eEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEE
Q 013914 161 ---KKNGKAVVVGGGYIGLELSAALKINNI------DVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGF 231 (434)
Q Consensus 161 ---~~~~~v~ViG~g~~~~e~a~~l~~~g~------~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i 231 (434)
..+++++|||+|++|+|+|..+.+.+. +|+++..... ... ++.... .+.+ +.+.||+++++..+.++
T Consensus 413 ~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~-~~~-~~~~~~-e~~~-~~~~GV~i~~~~~~~~i 488 (604)
T PRK13984 413 PKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERT-FEE-MPADME-EIEE-GLEEGVVIYPGWGPMEV 488 (604)
T ss_pred CcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccC-ccc-CCCCHH-HHHH-HHHcCCEEEeCCCCEEE
Confidence 136899999999999999999998753 7888643211 111 222221 2222 34679999999988888
Q ss_pred EecCCCcEEEEEeC--------CC-----------cEEECCEEEEcccCccChhhhhc----cccccCCcEEeCCCCCCC
Q 013914 232 TTNADGEVKEVKLK--------DG-----------RTLEADIVVVGVGGRPLISLFKG----QVAENKGGIETDDFFKTS 288 (434)
Q Consensus 232 ~~~~~g~v~~v~~~--------~g-----------~~~~~D~vi~a~G~~p~~~~~~~----~~~~~~g~i~vd~~~~t~ 288 (434)
.. +++++..+++. +| +++++|.|++|+|++|+++++.. .+..++|+|.||+++||+
T Consensus 489 ~~-~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~~G~i~vd~~~~Ts 567 (604)
T PRK13984 489 VI-ENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRILTNEYGQTS 567 (604)
T ss_pred Ec-cCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccccCCeEEeCCCCccC
Confidence 65 45666555432 12 36999999999999999988753 243467889999999999
Q ss_pred CCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccC
Q 013914 289 ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 289 ~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
+|+|||+|||+..+ .+..|+.+|+.||.+|...+
T Consensus 568 ~~gVfAaGD~~~~~-----------~~v~Ai~~G~~AA~~I~~~L 601 (604)
T PRK13984 568 IPWLFAGGDIVHGP-----------DIIHGVADGYWAAEGIDMYL 601 (604)
T ss_pred CCCEEEecCcCCch-----------HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999754 24668999999999997654
No 70
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.97 E-value=3.6e-29 Score=244.57 Aligned_cols=294 Identities=23% Similarity=0.275 Sum_probs=196.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++|+|||+|++|+++|..|++.|++ |+|+|+.+.... .+.. .+|.+... ........+++++
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~---V~v~e~~~~~gG---~l~~---------gip~~~~~--~~~~~~~~~~~~~ 205 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHT---VTVFEREDRCGG---LLMY---------GIPNMKLD--KAIVDRRIDLLSA 205 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCe---EEEEecCCCCCc---eeec---------cCCCccCC--HHHHHHHHHHHHh
Confidence 37999999999999999999999886 999999864321 0000 01111000 0001223456777
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCC-cccccCCCCCCCCCCCeEEecCHH-HHHHHHH--HH--
Q 013914 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREID-DADKLVE--AI-- 158 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~-~~~~~~~--~l-- 158 (434)
.|++++.++.+. .+... +.....||+|++|||+. |+.++ ++|.+.+++++...+. +...... ..
T Consensus 206 ~Gv~~~~~~~v~-~~~~~------~~~~~~~d~VilAtGa~~~~~l~---i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~ 275 (485)
T TIGR01317 206 EGIDFVTNTEIG-VDISA------DELKEQFDAVVLAGGATKPRDLP---IPGRELKGIHYAMEFLPSATKALLGKDFKD 275 (485)
T ss_pred CCCEEECCCEeC-CccCH------HHHHhhCCEEEEccCCCCCCcCC---CCCcCCCCcEeHHHHHHHHhhhhccccccc
Confidence 899999987653 11111 11235799999999998 77666 6887778888653322 1111100 00
Q ss_pred ---HhCCCCcEEEECCCHHHHHHHHHHHhCC-CeEEEEccCCccCCccC-----C---H--HHHHHHHHHHHhcCcEE-E
Q 013914 159 ---KAKKNGKAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWCMPRLF-----T---A--DIAAFYEGYYANKGIKI-I 223 (434)
Q Consensus 159 ---~~~~~~~v~ViG~g~~~~e~a~~l~~~g-~~v~lv~~~~~~~~~~~-----~---~--~~~~~~~~~l~~~GV~~-~ 223 (434)
....+++++|||+|++|+|+|..+.+.| .+|++++..+..+.... + . +......+..+..|+++ +
T Consensus 276 ~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~ 355 (485)
T TIGR01317 276 IIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPRE 355 (485)
T ss_pred cccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceE
Confidence 0125789999999999999988877776 57999988776543211 0 0 12223444445567654 5
Q ss_pred cCCeEEEEEecCCCcEEEEEe--------CCCc-----------EEECCEEEEcccCc-cChhhhhc-cccc-cCCcEE-
Q 013914 224 KGTVAVGFTTNADGEVKEVKL--------KDGR-----------TLEADIVVVGVGGR-PLISLFKG-QVAE-NKGGIE- 280 (434)
Q Consensus 224 ~~~~v~~i~~~~~g~v~~v~~--------~~g~-----------~~~~D~vi~a~G~~-p~~~~~~~-~~~~-~~g~i~- 280 (434)
+++.+.++..++++++..+++ ++|+ ++++|.||+|+|.. |++.++.. ++.. .+|.+.
T Consensus 356 ~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~ 435 (485)
T TIGR01317 356 YSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISA 435 (485)
T ss_pred EecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEe
Confidence 677788887644466666653 1332 69999999999986 88877654 5655 567774
Q ss_pred eCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCC
Q 013914 281 TDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 335 (434)
Q Consensus 281 vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 335 (434)
+|++++|+.|+|||+|||+..+ ..+..|..+|+.||.+|...+.+
T Consensus 436 ~~~~~~Ts~~gVfAaGD~~~g~----------~~~~~Av~~G~~AA~~i~~~L~g 480 (485)
T TIGR01317 436 GYDDYSTSIPGVFAAGDCRRGQ----------SLIVWAINEGRKAAAAVDRYLMG 480 (485)
T ss_pred cCCCceECCCCEEEeeccCCCc----------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999998653 35677999999999999876654
No 71
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.96 E-value=1.3e-27 Score=251.40 Aligned_cols=280 Identities=15% Similarity=0.127 Sum_probs=194.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCC-CCCCCCCcccccCCCCCCCChhhHh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPE-GTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
.+||+|||||||||+||.+|++.|++ |+|+|+++...- .+.... .....+...+ .....+.+.
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~---V~liD~~~~~GG-------~~~~~~~~~~g~~~~~~------~~~~~~~l~ 226 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGAR---VILVDEQPEAGG-------SLLSEAETIDGKPAADW------AAATVAELT 226 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCCCCC-------eeeccccccCCccHHHH------HHHHHHHHh
Confidence 57999999999999999999999987 999999865321 011100 0011110000 011222333
Q ss_pred hc-CcEEEcCCeeEEEECCCCEEEc---c-------C----C--cEEEcceEEEecCCCcccccCCCCCCCCCCCeEEec
Q 013914 84 EK-GIELILSTEIVRADIASKTLLS---A-------T----G--LIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLR 146 (434)
Q Consensus 84 ~~-~v~~~~~~~v~~i~~~~~~v~~---~-------~----~--~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~ 146 (434)
.. +++++.++.|+.+......... . + . .++.|++||||||+.++.++ ++|.+.+++++..
T Consensus 227 ~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~p---ipG~~~pgV~~~~ 303 (985)
T TIGR01372 227 AMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLV---FANNDRPGVMLAG 303 (985)
T ss_pred cCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCC---CCCCCCCCcEEch
Confidence 34 5999998888887653221110 0 0 1 15899999999999998877 6888888888765
Q ss_pred CHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcC
Q 013914 147 EIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKG 225 (434)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~-~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~ 225 (434)
....... ......+++++|+|+|++++|+|..|.+.|. .|++++..+.+ ...+.+.+++.||+++.+
T Consensus 304 ~~~~~l~---~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~---------~~~l~~~L~~~GV~i~~~ 371 (985)
T TIGR01372 304 AARTYLN---RYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV---------SPEARAEARELGIEVLTG 371 (985)
T ss_pred HHHHHHH---hhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch---------hHHHHHHHHHcCCEEEcC
Confidence 4443221 1111257899999999999999999999995 57888765433 234567789999999999
Q ss_pred CeEEEEEecCCCcEEEEEeC----CCcEEECCEEEEcccCccChhhhhc-cccccCCcEEeCCCC-----CCCCCcEEEe
Q 013914 226 TVAVGFTTNADGEVKEVKLK----DGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFF-----KTSADDVYAV 295 (434)
Q Consensus 226 ~~v~~i~~~~~g~v~~v~~~----~g~~~~~D~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~-----~t~~~~iya~ 295 (434)
+.+.++.. ++.+..|++. ++++++||.|++++|++||++++.. +.. +..|+.. .|+.|+||++
T Consensus 372 ~~v~~i~g--~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~-----~~~~~~~~~~~~~t~v~gVyaa 444 (985)
T TIGR01372 372 HVVAATEG--GKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGK-----LAWDAAIAAFLPGDAVQGCILA 444 (985)
T ss_pred CeEEEEec--CCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCC-----eeeccccCceecCCCCCCeEEe
Confidence 99999976 4555555554 4568999999999999999998753 222 2222221 3679999999
Q ss_pred cccccccccccCcceecccHHHHHHHHHHHHHHHhccC
Q 013914 296 GDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 296 GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
|||++. ..+..|..+|+.||..++...
T Consensus 445 GD~~g~-----------~~~~~A~~eG~~Aa~~i~~~l 471 (985)
T TIGR01372 445 GAANGL-----------FGLAAALADGAAAGAAAARAA 471 (985)
T ss_pred eccCCc-----------cCHHHHHHHHHHHHHHHHHHc
Confidence 999976 346678899999999886543
No 72
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.1e-29 Score=221.90 Aligned_cols=289 Identities=21% Similarity=0.274 Sum_probs=206.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.|||+||||||||-+||.+.+|+|.+++ ++-||-. ...+......++-+.....|......+.+..++
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTG--l~aerfG----------GQvldT~~IENfIsv~~teGpkl~~ale~Hv~~ 278 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTG--LVAERFG----------GQVLDTMGIENFISVPETEGPKLAAALEAHVKQ 278 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhh--hhhhhhC----------CeeccccchhheeccccccchHHHHHHHHHHhh
Confidence 5999999999999999999999998742 2222211 111111122222222222232223345566677
Q ss_pred cCcEEEcCCeeEEEECC-----CCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHH
Q 013914 85 KGIELILSTEIVRADIA-----SKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIK 159 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~-----~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~ 159 (434)
+.++++.....+.+.+. ...|.+++|..++++.+|++||++++..+.++-+....+++.++..++....
T Consensus 279 Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGPLF------ 352 (520)
T COG3634 279 YDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLF------ 352 (520)
T ss_pred cCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCccc------
Confidence 88888876677777663 2468889999999999999999999887743222234678888777766554
Q ss_pred hCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCc
Q 013914 160 AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGE 238 (434)
Q Consensus 160 ~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~g~ 238 (434)
++|+|+|||+|.+|+|.|-.|+..-..||+++-.+.+- .-+.+++.++. .+|+++.+..-++|.. +..+
T Consensus 353 --~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLk-------AD~VLq~kl~sl~Nv~ii~na~Ttei~G-dg~k 422 (520)
T COG3634 353 --KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELK-------ADAVLQDKLRSLPNVTIITNAQTTEVKG-DGDK 422 (520)
T ss_pred --CCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhh-------hHHHHHHHHhcCCCcEEEecceeeEEec-CCce
Confidence 69999999999999999999998888999997433322 12344455544 5799999999999987 3345
Q ss_pred EEEEEeCC---Cc--EEECCEEEEcccCccChhhhhccccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceec
Q 013914 239 VKEVKLKD---GR--TLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRV 312 (434)
Q Consensus 239 v~~v~~~~---g~--~~~~D~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~ 312 (434)
+.++...+ |+ .++-+-|++-+|..||+++++..+++ ..|-|.||.+..||+|+|||+|||...++.
T Consensus 423 V~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~vel~~rGEIivD~~g~TsvpGvFAAGD~T~~~yK-------- 494 (520)
T COG3634 423 VTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGAVELNRRGEIIVDARGETNVPGVFAAGDCTTVPYK-------- 494 (520)
T ss_pred ecceEEEeccCCceeEEEeeeeEEEEecccChhHhhchhhcCcCccEEEecCCCcCCCceeecCcccCCccc--------
Confidence 66665533 33 46677899999999999999988888 789999999999999999999999988763
Q ss_pred ccHHHHHHHHHHHHHHHh
Q 013914 313 EHVDHARKSAEQAVKTIM 330 (434)
Q Consensus 313 ~~~~~A~~~g~~aa~~i~ 330 (434)
.+-.|+.+|..|+.+.+
T Consensus 495 -QIIIamG~GA~AaL~AF 511 (520)
T COG3634 495 -QIIIAMGEGAKASLSAF 511 (520)
T ss_pred -eEEEEecCcchhhhhhh
Confidence 33344455555554443
No 73
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.96 E-value=1.9e-27 Score=240.19 Aligned_cols=287 Identities=22% Similarity=0.271 Sum_probs=196.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
+.++|+|||+|++||++|..|++.|++ |+|+|+.+..+ +++.. .+|.+... ........++++
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~---Vtv~e~~~~~G--------G~l~~----gip~~~l~--~~~~~~~~~~~~ 371 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQ---VDVFDRHPEIG--------GMLTF----GIPPFKLD--KTVLSQRREIFT 371 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCc---EEEEeCCCCCC--------Ceeec----cCCcccCC--HHHHHHHHHHHH
Confidence 358999999999999999999999987 99999987532 11111 11111110 000112345677
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcc-cccCCCCCCCCCCCeEEecCHHHH-----HHHHHH
Q 013914 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL-RLTDFGVEGADAKNIFYLREIDDA-----DKLVEA 157 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~-~~~~~~~~g~~~~~v~~~~~~~~~-----~~~~~~ 157 (434)
..|++++.++.+.. .+.+.+ ....||++++|||+.+. .++ +++.+.+++++...+... ..+...
T Consensus 372 ~~Gv~~~~~~~v~~------~~~~~~-l~~~~DaV~latGa~~~~~~~---i~g~~~~gv~~a~~~l~~~~~~~~~~~~~ 441 (639)
T PRK12809 372 AMGIDFHLNCEIGR------DITFSD-LTSEYDAVFIGVGTYGMMRAD---LPHEDAPGVIQALPFLTAHTRQLMGLPES 441 (639)
T ss_pred HCCeEEEcCCccCC------cCCHHH-HHhcCCEEEEeCCCCCCCCCC---CCCCccCCcEeHHHHHHHHHHhhccCccc
Confidence 88999998865421 122211 23569999999998753 333 678777777763222111 000000
Q ss_pred ----HHhCCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCcc-CCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEE
Q 013914 158 ----IKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGF 231 (434)
Q Consensus 158 ----l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~-~v~lv~~~~~~-~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i 231 (434)
+....+++++|+|+|.++++.|..+.+.|. +|+++.+.+.. ++. .+.++ ..+++.||++++++.++++
T Consensus 442 ~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~-~~~e~-----~~a~~eGv~~~~~~~~~~i 515 (639)
T PRK12809 442 EEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPG-SRKEV-----VNAREEGVEFQFNVQPQYI 515 (639)
T ss_pred cccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHHHH-----HHHHHcCCeEEeccCCEEE
Confidence 011246899999999999999999989984 89999987654 332 22222 2357889999999999999
Q ss_pred EecCCCcEEEEEe---C------CC-----------cEEECCEEEEcccCccCh-hhhh-ccccc-cCCcEEeCC----C
Q 013914 232 TTNADGEVKEVKL---K------DG-----------RTLEADIVVVGVGGRPLI-SLFK-GQVAE-NKGGIETDD----F 284 (434)
Q Consensus 232 ~~~~~g~v~~v~~---~------~g-----------~~~~~D~vi~a~G~~p~~-~~~~-~~~~~-~~g~i~vd~----~ 284 (434)
..+++|++..+.+ . +| .++++|.||+|+|+.|+. .+++ .++.. .+|.|.+|+ +
T Consensus 516 ~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~ 595 (639)
T PRK12809 516 ACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLP 595 (639)
T ss_pred EECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccC
Confidence 8655676665533 1 22 268999999999999975 3443 35655 568899986 4
Q ss_pred CCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccC
Q 013914 285 FKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 285 ~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
+||+.|+|||+|||+..+ .++..|+.+|+.||++|...+
T Consensus 596 ~~Ts~~gVfA~GD~~~g~----------~~vv~Ai~~Gr~AA~~i~~~l 634 (639)
T PRK12809 596 TQTHLKKVFAGGDAVHGA----------DLVVTAMAAGRQAARDMLTLF 634 (639)
T ss_pred cccCCCCEEEcCCCCCCc----------hHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999998754 457889999999999998654
No 74
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.96 E-value=3.1e-27 Score=227.16 Aligned_cols=292 Identities=18% Similarity=0.246 Sum_probs=190.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHH--cCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhH
Q 013914 5 SFKYVILGGGVSAGYAAREFAK--QGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY 82 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~--~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (434)
.++|+||||||||++||..|++ .|++ |+|+|+.+.. +. ++........+.... ....+..++
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~---Vtv~E~~p~p-gG-------lvr~gvaP~~~~~k~-----v~~~~~~~~ 89 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGAR---VDIIERLPTP-FG-------LVRSGVAPDHPETKN-----VTNQFSRVA 89 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCe---EEEEecCCCC-cc-------eEeeccCCCcchhHH-----HHHHHHHHH
Confidence 5789999999999999999997 4555 9999998742 21 111111011110000 011233445
Q ss_pred hhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCc-ccccCCCCCCCCCCCeEEecCHHHHH-------HH
Q 013914 83 KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTV-LRLTDFGVEGADAKNIFYLREIDDAD-------KL 154 (434)
Q Consensus 83 ~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~-~~~~~~~~~g~~~~~v~~~~~~~~~~-------~~ 154 (434)
...+++++.+..+ .+.+.+++- ...||++|+|||+.+ +.++ +||.+.+++++..++.... .+
T Consensus 90 ~~~~v~~~~nv~v------g~dvtl~~L-~~~yDaVIlAtGa~~~~~l~---IpG~d~~gV~~a~~fl~~~ng~~d~~~~ 159 (491)
T PLN02852 90 TDDRVSFFGNVTL------GRDVSLSEL-RDLYHVVVLAYGAESDRRLG---IPGEDLPGVLSAREFVWWYNGHPDCVHL 159 (491)
T ss_pred HHCCeEEEcCEEE------CccccHHHH-hhhCCEEEEecCCCCCCCCC---CCCCCCCCeEEHHHHHHHhhcchhhhhh
Confidence 5677888776433 223334333 247999999999986 4555 7888888898765542211 11
Q ss_pred HHHHHhCCCCcEEEECCCHHHHHHHHHHHhC--------------------C-CeEEEEccCCccCCccCCHHH------
Q 013914 155 VEAIKAKKNGKAVVVGGGYIGLELSAALKIN--------------------N-IDVSMVYPEPWCMPRLFTADI------ 207 (434)
Q Consensus 155 ~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~--------------------g-~~v~lv~~~~~~~~~~~~~~~------ 207 (434)
...+ ..+++++|||+|++|+++|..|.+. | .+|+++.|....-..+..+++
T Consensus 160 ~~~~--~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l 237 (491)
T PLN02852 160 PPDL--KSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGL 237 (491)
T ss_pred hhcc--cCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhcc
Confidence 1111 1478999999999999999998775 5 469999887642111111111
Q ss_pred -------------------------------HHHHHHHHHh---------cCcEEEcCCeEEEEEec--CCCcEEEEEeC
Q 013914 208 -------------------------------AAFYEGYYAN---------KGIKIIKGTVAVGFTTN--ADGEVKEVKLK 245 (434)
Q Consensus 208 -------------------------------~~~~~~~l~~---------~GV~~~~~~~v~~i~~~--~~g~v~~v~~~ 245 (434)
.+.+.+...+ .+|.|++...+.+|..+ +++++.++++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~ 317 (491)
T PLN02852 238 KNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLE 317 (491)
T ss_pred CCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEE
Confidence 1122222222 57999999999999742 23677777653
Q ss_pred -----------------CCc--EEECCEEEEcccCc--cChhh-hhc--cccc-cCCcEEeCCCCCCCCCcEEEeccccc
Q 013914 246 -----------------DGR--TLEADIVVVGVGGR--PLISL-FKG--QVAE-NKGGIETDDFFKTSADDVYAVGDVAT 300 (434)
Q Consensus 246 -----------------~g~--~~~~D~vi~a~G~~--p~~~~-~~~--~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~ 300 (434)
+|+ +++||.||.++|++ |+..+ +.. ++.. .+|+|.+|+.++|+.|+|||+|||..
T Consensus 318 ~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T~ipGvyAaGDi~~ 397 (491)
T PLN02852 318 RTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGADTEPGLYVVGWLKR 397 (491)
T ss_pred EeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCccCCCCEEEeeeEec
Confidence 132 58999999999997 55553 322 3333 67999999888999999999999998
Q ss_pred ccccccCcceecccHHHHHHHHHHHHHHHhccC
Q 013914 301 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 301 ~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
.+. ..+..++.+|+.++.+|....
T Consensus 398 Gp~---------gvI~t~~~dA~~ta~~i~~d~ 421 (491)
T PLN02852 398 GPT---------GIIGTNLTCAEETVASIAEDL 421 (491)
T ss_pred CCC---------CeeeecHhhHHHHHHHHHHHH
Confidence 664 356677788888888887654
No 75
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.5e-28 Score=199.06 Aligned_cols=278 Identities=22% Similarity=0.230 Sum_probs=198.9
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccC-CCCCCCChh
Q 013914 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVG-SGGERLLPE 80 (434)
Q Consensus 2 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 80 (434)
|..+.+|+|||+|||+.+||.++++..++ -+|+|--.... ......+.......++|+|+.... ....+...+
T Consensus 5 ~~h~e~v~IiGSGPAa~tAAiYaaraelk---PllfEG~~~~~---i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrk 78 (322)
T KOG0404|consen 5 MTHNENVVIIGSGPAAHTAAIYAARAELK---PLLFEGMMANG---IAPGGQLTTTTDVENFPGFPDGITGPELMDKMRK 78 (322)
T ss_pred ceeeeeEEEEccCchHHHHHHHHhhcccC---ceEEeeeeccC---cCCCceeeeeeccccCCCCCcccccHHHHHHHHH
Confidence 33456899999999999999999999877 48888643211 111333445556788888875432 223334445
Q ss_pred hHhhcCcEEEcCCeeEEEECCCCEEEc-cCCcEEEcceEEEecCCCcccccCCCCCCCC-----CCCeEEecCHHHHHHH
Q 013914 81 WYKEKGIELILSTEIVRADIASKTLLS-ATGLIFKYQILVIATGSTVLRLTDFGVEGAD-----AKNIFYLREIDDADKL 154 (434)
Q Consensus 81 ~~~~~~v~~~~~~~v~~i~~~~~~v~~-~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~-----~~~v~~~~~~~~~~~~ 154 (434)
...++|.+++.. .|..++...+-+.+ .+.+.+.+|.+|+|||+..+... +||.. ..++..+--++.+.-+
T Consensus 79 qs~r~Gt~i~tE-tVskv~~sskpF~l~td~~~v~~~avI~atGAsAkRl~---~pg~ge~~fWqrGiSaCAVCDGaapi 154 (322)
T KOG0404|consen 79 QSERFGTEIITE-TVSKVDLSSKPFKLWTDARPVTADAVILATGASAKRLH---LPGEGEGEFWQRGISACAVCDGAAPI 154 (322)
T ss_pred HHHhhcceeeee-ehhhccccCCCeEEEecCCceeeeeEEEecccceeeee---cCCCCcchHHhcccchhhcccCcchh
Confidence 556689999986 88888887764332 35567999999999999887766 45531 2233322222222111
Q ss_pred HHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec
Q 013914 155 VEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 234 (434)
Q Consensus 155 ~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~ 234 (434)
+++|..+|||+|.+++|-|..|...+.+|++++|.+.+-.. . .+.++..+.-+|++++++.+.+...+
T Consensus 155 ------frnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRAs---~---~Mq~ra~~npnI~v~~nt~~~ea~gd 222 (322)
T KOG0404|consen 155 ------FRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRAS---K---IMQQRAEKNPNIEVLYNTVAVEALGD 222 (322)
T ss_pred ------hcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhHH---H---HHHHHHhcCCCeEEEechhhhhhccC
Confidence 25789999999999999999999999999999999877541 1 22334456678999999988877662
Q ss_pred CCCcEEEE-----EeCCCcEEECCEEEEcccCccChhhhhccccc-cCCcEEeC-CCCCCCCCcEEEeccccccc
Q 013914 235 ADGEVKEV-----KLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETD-DFFKTSADDVYAVGDVATFP 302 (434)
Q Consensus 235 ~~g~v~~v-----~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd-~~~~t~~~~iya~GD~~~~~ 302 (434)
.+.+..+ .+.+-+.++.+-++.++|..|++.+++..+++ ++|+|.+- ..-.||+|++||+||+.+..
T Consensus 223 -~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~gqve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~k 296 (322)
T KOG0404|consen 223 -GKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKGQVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKK 296 (322)
T ss_pred -cccccceEEEecccCcccccccceeEEEecCCchhhHhcCceeeccCceEEeccCcccccccceeeccccchHH
Confidence 2322233 33334579999999999999999999998888 78998887 46788999999999998754
No 76
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.95 E-value=2.1e-26 Score=230.21 Aligned_cols=285 Identities=21% Similarity=0.307 Sum_probs=192.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++|+|||+||+||++|..|++.|++ |+++|+.+..+. ++. ..++.+... ........+.+.+
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~---V~v~e~~~~~GG--------~l~----~gip~~~~~--~~~~~~~l~~~~~ 199 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHA---VTIFEAGPKLGG--------MMR----YGIPAYRLP--REVLDAEIQRILD 199 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCCC--------eee----ecCCCccCC--HHHHHHHHHHHHH
Confidence 47899999999999999999999986 999999865321 111 112221110 0001122345667
Q ss_pred cCcEEEcCCee-EEEECCCCEEEccCCcEEEcceEEEecCCCcc-cccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCC
Q 013914 85 KGIELILSTEI-VRADIASKTLLSATGLIFKYQILVIATGSTVL-RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKK 162 (434)
Q Consensus 85 ~~v~~~~~~~v-~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~-~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~ 162 (434)
.|+++..+..+ ..+..+ . ....||++++|||+.+. ... +++.+..+++..-.+.. ..........
T Consensus 200 ~Gv~~~~~~~~~~~~~~~--~------~~~~~D~Vi~AtG~~~~~~~~---i~g~~~~gv~~~~~~l~--~~~~~~~~~~ 266 (564)
T PRK12771 200 LGVEVRLGVRVGEDITLE--Q------LEGEFDAVFVAIGAQLGKRLP---IPGEDAAGVLDAVDFLR--AVGEGEPPFL 266 (564)
T ss_pred CCCEEEeCCEECCcCCHH--H------HHhhCCEEEEeeCCCCCCcCC---CCCCccCCcEEHHHHHH--HhhccCCcCC
Confidence 88988887544 221110 0 11358999999998753 233 56665555554322211 1100001124
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCC-CeEEEEccCCcc-CCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEE
Q 013914 163 NGKAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 240 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g-~~v~lv~~~~~~-~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~ 240 (434)
+++++|+|+|..+++.+..+.+.+ .+|+++.+.+.. ++. ...+ + +.+.+.||+++++..+.++..++++.+
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~-~~~~----~-~~a~~~GVki~~~~~~~~i~~~~~~~~- 339 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPA-HDEE----I-EEALREGVEINWLRTPVEIEGDENGAT- 339 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCC-CHHH----H-HHHHHcCCEEEecCCcEEEEcCCCCEE-
Confidence 789999999999999999999988 779998887542 222 2222 2 234568999999999999976444432
Q ss_pred EEE-----e----CCC---------cEEECCEEEEcccCccChhhhhc--cccccCCcEEeCC-CCCCCCCcEEEecccc
Q 013914 241 EVK-----L----KDG---------RTLEADIVVVGVGGRPLISLFKG--QVAENKGGIETDD-FFKTSADDVYAVGDVA 299 (434)
Q Consensus 241 ~v~-----~----~~g---------~~~~~D~vi~a~G~~p~~~~~~~--~~~~~~g~i~vd~-~~~t~~~~iya~GD~~ 299 (434)
+++ . ++| .++++|.||+|+|..|++.++.. ++..++|+|.||+ +++|++|+|||+|||+
T Consensus 340 ~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~ 419 (564)
T PRK12771 340 GLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMV 419 (564)
T ss_pred EEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhccCcccCCCCEEeCCCCccCCCCCEEeccCcC
Confidence 322 1 222 37999999999999999888763 4444678999998 7889999999999998
Q ss_pred cccccccCcceecccHHHHHHHHHHHHHHHhccCCCC
Q 013914 300 TFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGK 336 (434)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 336 (434)
..+ .++..|+.+|+.||.+|...+.++
T Consensus 420 ~g~----------~~v~~Av~~G~~aA~~i~~~L~g~ 446 (564)
T PRK12771 420 PGP----------RTVTTAIGHGKKAARNIDAFLGGE 446 (564)
T ss_pred CCc----------hHHHHHHHHHHHHHHHHHHHHcCC
Confidence 644 567889999999999997766553
No 77
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.93 E-value=3.8e-24 Score=206.80 Aligned_cols=286 Identities=16% Similarity=0.174 Sum_probs=181.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCC-CccC-------------ccccC-------CCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YER-PALS-------------KAYLF-------PEGT 60 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~--~~~-~~~~-------------~~~~~-------~~~~ 60 (434)
..++|+|||||+|||+||++|++.|++ |+|+|+++..+ |.. +... ....+ +...
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~---v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~ 85 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHT---VVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPREC 85 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCe---EEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhh
Confidence 468999999999999999999999987 99999987532 111 0000 00000 0000
Q ss_pred CCCCCccccc--------------CCCCCCCChhhHhhcCcE--EEcCCeeEEEECCCCE--EEccCC--c--EEEcceE
Q 013914 61 ARLPGFHVCV--------------GSGGERLLPEWYKEKGIE--LILSTEIVRADIASKT--LLSATG--L--IFKYQIL 118 (434)
Q Consensus 61 ~~~~~~~~~~--------------~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~~~--v~~~~~--~--~~~~d~l 118 (434)
..++++.... .......+.++.++.++. +.++++|+.+++..+. |.+.++ . +..||+|
T Consensus 86 m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~V 165 (461)
T PLN02172 86 MGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAV 165 (461)
T ss_pred ccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEE
Confidence 1111111110 000112233444556777 7888999999886654 443322 2 4679999
Q ss_pred EEecC--CCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013914 119 VIATG--STVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 196 (434)
Q Consensus 119 vlAtG--~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~ 196 (434)
|+||| +.|+.|+++++.... ..+++.+++.+... .++++|+|||+|.+|+|+|..|...+.+|+++.+.+
T Consensus 166 IvAtG~~~~P~~P~ipG~~~f~-G~~iHs~~yr~~~~-------~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 166 VVCNGHYTEPNVAHIPGIKSWP-GKQIHSHNYRVPDP-------FKNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred EEeccCCCCCcCCCCCCcccCC-ceEEEecccCCccc-------cCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 99999 678888854333222 23344444433322 268999999999999999999999999999999865
Q ss_pred ccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhccccccC
Q 013914 197 WCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENK 276 (434)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~ 276 (434)
.+.. . ..+.....++..+..|..+.. ++ .|.+.||+.+++|.||+|||++++.++++. .
T Consensus 238 ~~~~--~---------~~~~~~~~~v~~~~~I~~~~~--~g---~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~-----~ 296 (461)
T PLN02172 238 ESDT--Y---------EKLPVPQNNLWMHSEIDTAHE--DG---SIVFKNGKVVYADTIVHCTGYKYHFPFLET-----N 296 (461)
T ss_pred cccc--c---------ccCcCCCCceEECCcccceec--CC---eEEECCCCCccCCEEEECCcCCccccccCc-----c
Confidence 3321 0 011112234555666666643 44 488999999999999999999999988763 2
Q ss_pred CcEEeCCCC------CC---C-CCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhcc
Q 013914 277 GGIETDDFF------KT---S-ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 277 g~i~vd~~~------~t---~-~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 332 (434)
+.+.+|+.. ++ . .|+++.+|=.... .....+..|++.+|+-+.+.
T Consensus 297 ~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~-----------~~f~~~E~Qa~~~a~v~sG~ 351 (461)
T PLN02172 297 GYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMG-----------IQFVMFEIQSKWVAAVLSGR 351 (461)
T ss_pred cceeeCCCcchhhHHhhcCCCCCCcEEEEeccccc-----------cCchhHHHHHHHHHHHHcCC
Confidence 445555421 11 2 4899999954322 23445667888888887765
No 78
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.89 E-value=2.9e-22 Score=173.65 Aligned_cols=306 Identities=19% Similarity=0.256 Sum_probs=208.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
++++|+|||||.+|+++|..+.++ +..++|.++|+.+.+.|+. ... +.......+.. .......+-
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rk-l~~g~vgIvep~e~HyYQP-gfT---LvGgGl~~l~~---------srr~~a~li 103 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRK-LGSGSVGIVEPAEDHYYQP-GFT---LVGGGLKSLDS---------SRRKQASLI 103 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhh-cCCCceEEecchhhcccCc-ceE---Eeccchhhhhh---------ccCcccccc
Confidence 578999999999999999999886 3467799999998876652 110 00110011100 000011111
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCC-CCCCCCCeEEecCHHHHHHHHHHHHhCC
Q 013914 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGV-EGADAKNIFYLREIDDADKLVEAIKAKK 162 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~-~g~~~~~v~~~~~~~~~~~~~~~l~~~~ 162 (434)
..+..++. ..|.+++++.++|.+.+|++|.||++|||+|..-+.-.++|+ ++.+.+++.+..+..-+++..+.+...+
T Consensus 104 P~~a~wi~-ekv~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk 182 (446)
T KOG3851|consen 104 PKGATWIK-EKVKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFK 182 (446)
T ss_pred cCCcHHHH-HHHHhcCCCcCeEEccCCcEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHHhcc
Confidence 22444444 378888999999999999999999999999987766554443 3356789999999999988888887655
Q ss_pred CCcEEE---------ECCCHHHHHHHHH-HHhCCC--eEEEE--ccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeE
Q 013914 163 NGKAVV---------VGGGYIGLELSAA-LKINNI--DVSMV--YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVA 228 (434)
Q Consensus 163 ~~~v~V---------iG~g~~~~e~a~~-l~~~g~--~v~lv--~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v 228 (434)
..+.+. .|+-.-.+-++.. +++.|. ++.++ ...+.+.. -+..++++++..+++.|++......
T Consensus 183 ~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFg---Vk~Y~~AL~k~~~~rni~vn~krnL 259 (446)
T KOG3851|consen 183 KGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFG---VKHYADALEKVIQERNITVNYKRNL 259 (446)
T ss_pred CCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecCccceec---HHHHHHHHHHHHHhcceEeeeccce
Confidence 444432 3444444555544 455553 34444 33333322 3567889999999999999988888
Q ss_pred EEEEecCCCcEEEEEeCC-C--cEEECCEEEEcccCccChhhhhccccccCCcEEeCC-CCCC-CCCcEEEecccccccc
Q 013914 229 VGFTTNADGEVKEVKLKD-G--RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDD-FFKT-SADDVYAVGDVATFPM 303 (434)
Q Consensus 229 ~~i~~~~~g~v~~v~~~~-g--~~~~~D~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~-~~~t-~~~~iya~GD~~~~~~ 303 (434)
.++..++...+.. .+++ | .+++++++-+....++...+.++.+....|++.||+ ++|. .+||||++|||...|+
T Consensus 260 iEV~~~~~~AvFe-~L~kPG~t~ei~yslLHv~Ppms~pe~l~~s~~adktGfvdVD~~TlQs~kypNVFgiGDc~n~Pn 338 (446)
T KOG3851|consen 260 IEVRTNDRKAVFE-NLDKPGVTEEIEYSLLHVTPPMSTPEVLANSDLADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPN 338 (446)
T ss_pred EEEeccchhhHHH-hcCCCCceeEEeeeeeeccCCCCChhhhhcCcccCcccceecChhhhccccCCCceeeccccCCCc
Confidence 8887633221111 1222 4 468899999888888877777777666789999996 5777 8999999999999887
Q ss_pred cccCcceecccHHHHHHHHHHHHHHHhccCCCC
Q 013914 304 KLYREMRRVEHVDHARKSAEQAVKTIMATEGGK 336 (434)
Q Consensus 304 ~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 336 (434)
. +..+.+..|..++-+|+..-.+|+
T Consensus 339 s--------KTaAAvaaq~~vv~~nl~~~m~g~ 363 (446)
T KOG3851|consen 339 S--------KTAAAVAAQSPVVDKNLTQVMQGK 363 (446)
T ss_pred h--------hhHHHHHhcCchhhhhHHHHhcCC
Confidence 6 556555677888888887655554
No 79
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.89 E-value=1e-22 Score=171.72 Aligned_cols=269 Identities=23% Similarity=0.302 Sum_probs=176.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-CCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhc
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-YERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
+.+|||||.||.+||..|+.+- +.++|+++..++..- ...-.....++....... ....+...+.
T Consensus 1 kfivvgggiagvscaeqla~~~-psa~illitass~vksvtn~~~i~~ylekfdv~e-------------q~~~elg~~f 66 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLE-PSAEILLITASSFVKSVTNYQKIGQYLEKFDVKE-------------QNCHELGPDF 66 (334)
T ss_pred CeEEEcCccccccHHHHHHhhC-CCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccc-------------cchhhhcccH
Confidence 3689999999999999999974 567899999986521 000000000000000000 0000000000
Q ss_pred CcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCc
Q 013914 86 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGK 165 (434)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~ 165 (434)
. +++. .|..++...+.+++.+|.++.|++|++|||++|.... ++ -.+.+...++.+.++.++.++. +.|.
T Consensus 67 ~-~~~~--~v~~~~s~ehci~t~~g~~~ky~kKOG~tg~kPklq~----E~-~n~~Iv~irDtDsaQllq~kl~--kaK~ 136 (334)
T KOG2755|consen 67 R-RFLN--DVVTWDSSEHCIHTQNGEKLKYFKLCLCTGYKPKLQV----EG-INPKIVGIRDTDSAQLLQCKLV--KAKI 136 (334)
T ss_pred H-HHHH--hhhhhccccceEEecCCceeeEEEEEEecCCCcceee----cC-CCceEEEEecCcHHHHHHHHHh--hcce
Confidence 0 1111 2556677889999999999999999999999997543 33 2367888889999999998887 5899
Q ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcC------------cEEEcCC-------
Q 013914 166 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKG------------IKIIKGT------- 226 (434)
Q Consensus 166 v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~G------------V~~~~~~------- 226 (434)
|+|+|.|-+++|++.++. +.+|+|....+.+...++++.+...+...++..+ ++.+.++
T Consensus 137 VlilgnGgia~El~yElk--~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~ 214 (334)
T KOG2755|consen 137 VLILGNGGIAMELTYELK--ILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVGP 214 (334)
T ss_pred EEEEecCchhHHHHHHhh--cceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCccc
Confidence 999999999999998875 5679999888888888788887776665552111 1011110
Q ss_pred -----------------------------eEEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCccChhhh-hccccc
Q 013914 227 -----------------------------VAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLF-KGQVAE 274 (434)
Q Consensus 227 -----------------------------~v~~i~~~~~g~v~~v~~~~g--~~~~~D~vi~a~G~~p~~~~~-~~~~~~ 274 (434)
-+....+++.+.+.......| ..+.||.+++|+|..||.+++ ...+..
T Consensus 215 algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~~lq~ 294 (334)
T KOG2755|consen 215 ALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNKMLQI 294 (334)
T ss_pred ccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhcccccccccccccceeeeeEEEeccccCcCceEEecChhhh
Confidence 000000001111111111111 368899999999999999955 334455
Q ss_pred -cCCcEEeCCCCCCCCCcEEEecccccc
Q 013914 275 -NKGGIETDDFFKTSADDVYAVGDVATF 301 (434)
Q Consensus 275 -~~g~i~vd~~~~t~~~~iya~GD~~~~ 301 (434)
++|++.||+.|+|+.|++||+||+...
T Consensus 295 ~edggikvdd~m~tslpdvFa~gDvctt 322 (334)
T KOG2755|consen 295 TEDGGIKVDDAMETSLPDVFAAGDVCTT 322 (334)
T ss_pred ccccCeeehhhccccccceeeecceecc
Confidence 889999999999999999999998763
No 80
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.86 E-value=2.5e-21 Score=184.62 Aligned_cols=288 Identities=21% Similarity=0.251 Sum_probs=198.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++|.|||||||||++|..|++.|+. |+++|+.+... +++.. .+|.+... ........+.+++
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~---Vtv~e~~~~~G--------Gll~y----GIP~~kl~--k~i~d~~i~~l~~ 185 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHD---VTVFERVALDG--------GLLLY----GIPDFKLP--KDILDRRLELLER 185 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCe---EEEeCCcCCCc--------eeEEe----cCchhhcc--chHHHHHHHHHHH
Confidence 47899999999999999999999987 99999986532 11111 12222211 0112344567778
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCC-cccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHh---
Q 013914 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA--- 160 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~--- 160 (434)
.|++++.++++- +.++.+.- .-.||.+++|+|+. |+..+ ++|.+.++++...++....... .+..
T Consensus 186 ~Gv~~~~~~~vG------~~it~~~L-~~e~Dav~l~~G~~~~~~l~---i~g~d~~gv~~A~dfL~~~~~~-~~~~~~~ 254 (457)
T COG0493 186 SGVEFKLNVRVG------RDITLEEL-LKEYDAVFLATGAGKPRPLD---IPGEDAKGVAFALDFLTRLNKE-VLGDFAE 254 (457)
T ss_pred cCeEEEEcceEC------CcCCHHHH-HHhhCEEEEeccccCCCCCC---CCCcCCCcchHHHHHHHHHHHH-Hhccccc
Confidence 899999886542 11222111 23569999999975 55445 7888878887544333222211 1110
Q ss_pred ---C--CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCcc-CCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013914 161 ---K--KNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 161 ---~--~~~~v~ViG~g~~~~e~a~~l~~~g~-~v~lv~~~~~~-~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~ 233 (434)
. .+++++|||+|.++++++....+.|. +|+.+.+...- -...++....+...+...++|+++.+.....++..
T Consensus 255 ~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~ 334 (457)
T COG0493 255 DRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIG 334 (457)
T ss_pred ccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEee
Confidence 0 23899999999999999999999997 67777532222 11112333455666778889999999988899988
Q ss_pred cCCCcEEEEEeCC-------------------Cc--EEECCEEEEcccCccChhhh---hccccc-cCCcEEeCCCC-CC
Q 013914 234 NADGEVKEVKLKD-------------------GR--TLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFF-KT 287 (434)
Q Consensus 234 ~~~g~v~~v~~~~-------------------g~--~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~-~t 287 (434)
+++|++..+.+.. |+ .+++|+|+.|+|+.++.... ...+.. ..|.+.+|+.+ +|
T Consensus 335 ~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~t 414 (457)
T COG0493 335 NEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQT 414 (457)
T ss_pred cCCCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccc
Confidence 7788887654311 22 57799999999988875432 113444 67999999998 99
Q ss_pred CCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHh
Q 013914 288 SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM 330 (434)
Q Consensus 288 ~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 330 (434)
+.|++||.||+.... ..+..|+.+|+.+|+.|-
T Consensus 415 s~~~vfa~gD~~~g~----------~~vv~ai~eGr~aak~i~ 447 (457)
T COG0493 415 SIPGVFAGGDAVRGA----------ALVVWAIAEGREAAKAID 447 (457)
T ss_pred cCCCeeeCceeccch----------hhhhhHHhhchHHHHhhh
Confidence 999999999999863 567888999999998876
No 81
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.86 E-value=1.6e-20 Score=184.01 Aligned_cols=298 Identities=16% Similarity=0.250 Sum_probs=154.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CC--C-Cc-----cCcccc--CCCCCCCCCCcccccCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YE--R-PA-----LSKAYL--FPEGTARLPGFHVCVGSG 73 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~--~~--~-~~-----~~~~~~--~~~~~~~~~~~~~~~~~~ 73 (434)
++|+|||||++||++|..|.+.|++ ++++|+++..+ |. . +. ..+.+. .+.....+++|.......
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~---~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p 78 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLE---VTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYP 78 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-E---EEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCC---CeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCC
Confidence 6899999999999999999999987 99999998743 11 0 00 000000 001112222222211110
Q ss_pred -------CCCCChhhHhhcCc--EEEcCCeeEEEECCCC-------EEEccC-Cc--EEEcceEEEecCC--CcccccCC
Q 013914 74 -------GERLLPEWYKEKGI--ELILSTEIVRADIASK-------TLLSAT-GL--IFKYQILVIATGS--TVLRLTDF 132 (434)
Q Consensus 74 -------~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~~-------~v~~~~-~~--~~~~d~lvlAtG~--~~~~~~~~ 132 (434)
....+..+.++.++ .+.++++|.++..... .|++.+ +. +-.+|++|+|||- .|+.|. .
T Consensus 79 ~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~-~ 157 (531)
T PF00743_consen 79 DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPE-P 157 (531)
T ss_dssp SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB----
T ss_pred CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCCh-h
Confidence 11223344445555 5778889998875321 244433 32 4579999999994 577664 1
Q ss_pred CCCCCC--CCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc-CCccC------
Q 013914 133 GVEGAD--AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC-MPRLF------ 203 (434)
Q Consensus 133 ~~~g~~--~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~-~~~~~------ 203 (434)
.++|.+ ...+++++++.+...+ ++|+|+|||+|.+|+++|..+.+...+|++..|...+ +++..
T Consensus 158 ~~~G~e~F~G~i~HS~~yr~~~~f-------~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~ 230 (531)
T PF00743_consen 158 SFPGLEKFKGEIIHSKDYRDPEPF-------KGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPF 230 (531)
T ss_dssp --CTGGGHCSEEEEGGG--TGGGG-------TTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC----------------
T ss_pred hhhhhhcCCeeEEccccCcChhhc-------CCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccccc
Confidence 134432 2457777777665443 7899999999999999999999999999988876443 22211
Q ss_pred ----------------CHHHHHHH-HH--------------------------------HHHhcCcEEEcCCeEEEEEec
Q 013914 204 ----------------TADIAAFY-EG--------------------------------YYANKGIKIIKGTVAVGFTTN 234 (434)
Q Consensus 204 ----------------~~~~~~~~-~~--------------------------------~l~~~GV~~~~~~~v~~i~~~ 234 (434)
+..+.+.+ .+ .+....|.+.. .|.++..
T Consensus 231 D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk~--~I~~~~~- 307 (531)
T PF00743_consen 231 DMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVKP--DIKRFTE- 307 (531)
T ss_dssp --------------------------------------------------------------------EE---EEEE-S-
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccc-
Confidence 11111111 00 11111122111 1222221
Q ss_pred CCCcEEEEEeCCCcEE-ECCEEEEcccCccChhhhhccccc-cCCcEEeCCCC---CCCCCcEEEecccccccccccCcc
Q 013914 235 ADGEVKEVKLKDGRTL-EADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFF---KTSADDVYAVGDVATFPMKLYREM 309 (434)
Q Consensus 235 ~~g~v~~v~~~~g~~~-~~D~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~---~t~~~~iya~GD~~~~~~~~~~~~ 309 (434)
.++.+.||+++ ++|.||+|||++....+++..+.. .++.+..-.++ +..+|++..+|=+....
T Consensus 308 -----~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~~~~~~~LYk~vfp~~~~~ptLafIG~~~~~g------- 375 (531)
T PF00743_consen 308 -----NSVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIKVDDNRVRLYKHVFPPNLDHPTLAFIGLVQPFG------- 375 (531)
T ss_dssp -----SEEEETTSEEEEE-SEEEE---EE---TTB-TTTT-S-SSSSSEETTTEETETTSTTEEESS-SBSSS-------
T ss_pred -----cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------
Confidence 25778999875 699999999999888888654332 33322211221 11458899999653211
Q ss_pred eecccHHHHHHHHHHHHHHHhcc
Q 013914 310 RRVEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 310 ~~~~~~~~A~~~g~~aa~~i~~~ 332 (434)
.....+..|++.+++-+.+.
T Consensus 376 ---~~fp~~ElQArw~a~v~sG~ 395 (531)
T PF00743_consen 376 ---SIFPIFELQARWAARVFSGR 395 (531)
T ss_dssp ----HHHHHHHHHHHHHHHHTTS
T ss_pred ---cccccccccccccccccccc
Confidence 23456778999888887765
No 82
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.85 E-value=1.5e-19 Score=182.49 Aligned_cols=283 Identities=13% Similarity=0.110 Sum_probs=162.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC--C--CCccCccccCCCCCCCCC---CcccccCCCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY--E--RPALSKAYLFPEGTARLP---GFHVCVGSGGER 76 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~--~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 76 (434)
+.++|+|||+||||++||.+|++.|++ |+++|+.+..+. . .|......+.+.-....+ +-....+.. ..
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~---Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp-~R 457 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHN---VTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGIT-VR 457 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCe---EEEEccccccccccccccccchhhhhccchhhhccccCCcccccCcc-cc
Confidence 357999999999999999999999987 999998753211 1 000000000000000000 000000000 01
Q ss_pred CCh------hhHhhc--CcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCC-CcccccCCCCCCCCCCCeEEecC
Q 013914 77 LLP------EWYKEK--GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS-TVLRLTDFGVEGADAKNIFYLRE 147 (434)
Q Consensus 77 ~~~------~~~~~~--~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~-~~~~~~~~~~~g~~~~~v~~~~~ 147 (434)
... ....+. ++.++.+.. . +..++.++-....||+++||||+ .|+.++ ++|.+..++++..+
T Consensus 458 ~~k~~l~~i~~il~~g~~v~~~~gv~-l-----G~dit~edl~~~gyDAV~IATGA~kpr~L~---IPGeda~GV~sA~D 528 (1028)
T PRK06567 458 WDKNNLDILRLILERNNNFKYYDGVA-L-----DFNITKEQAFDLGFDHIAFCIGAGQPKVLD---IENFEAKGVKTASD 528 (1028)
T ss_pred chHHHHHHHHHHHhcCCceEEECCeE-E-----CccCCHHHHhhcCCCEEEEeCCCCCCCCCC---CCCccCCCeEEHHH
Confidence 111 111222 355555533 1 12222222124679999999999 688777 68877788886554
Q ss_pred HHHHHHHHHHH-----Hh-CCCCcEEEECCCHHHHHHHHHHHh-------------------------------------
Q 013914 148 IDDADKLVEAI-----KA-KKNGKAVVVGGGYIGLELSAALKI------------------------------------- 184 (434)
Q Consensus 148 ~~~~~~~~~~l-----~~-~~~~~v~ViG~g~~~~e~a~~l~~------------------------------------- 184 (434)
+.......... .. ..+++|+|||||.+|+|+|.....
T Consensus 529 fL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~~g 608 (1028)
T PRK06567 529 FLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKLFK 608 (1028)
T ss_pred HHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHHhhc
Confidence 32221111000 00 025799999999999999984332
Q ss_pred --------------CCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-----
Q 013914 185 --------------NNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK----- 245 (434)
Q Consensus 185 --------------~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~----- 245 (434)
.|. |+++.|...--..... .-...+ +...+.||+|+.+..+.++..+++|++.++++.
T Consensus 609 ~~~~~~~v~~l~~~~G~-VtIvYRr~~~empA~~-~~~eEv-~~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~ 685 (1028)
T PRK06567 609 EAKNNEELRKVFNKLGG-ATVYYRGRLQDSPAYK-LNHEEL-IYALALGVDFKENMQPLRINVDKYGHVESVEFENRNRH 685 (1028)
T ss_pred chhccchhhhhhccCCc-eEEEecCChhhCCCCC-CCHHHH-HHHHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEecc
Confidence 122 7887776432111110 001222 235667999999999999987667877766543
Q ss_pred ---------C-C---------------cEEECCEEEEcccCccChhhhhccccccCCcEEeCCCCCCCCCcEEEeccccc
Q 013914 246 ---------D-G---------------RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 300 (434)
Q Consensus 246 ---------~-g---------------~~~~~D~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t~~~~iya~GD~~~ 300 (434)
+ + .+++||.||+|+|..||+..... ++-..||+-.
T Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~~~--------------------~~s~~~d~~~ 745 (1028)
T PRK06567 686 CEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFDED--------------------KYSYFGDCNP 745 (1028)
T ss_pred cccccccccccccccCCcCcccCCCccccccCCEEEEecccCCccccccc--------------------ccccccCCCC
Confidence 1 1 36899999999999999876311 1123344433
Q ss_pred ccccccCcceecccHHHHHHHHHHHHHHHhc
Q 013914 301 FPMKLYREMRRVEHVDHARKSAEQAVKTIMA 331 (434)
Q Consensus 301 ~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 331 (434)
... .++..|+.+|+.++.+|..
T Consensus 746 ~f~---------Gtvv~A~as~k~~~~~i~~ 767 (1028)
T PRK06567 746 KYS---------GSVVKALASSKEGYDAINK 767 (1028)
T ss_pred ccc---------cHHHHHHHHHHhHHHHHHH
Confidence 322 4677788899999998843
No 83
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.82 E-value=1.1e-21 Score=171.01 Aligned_cols=188 Identities=32% Similarity=0.450 Sum_probs=122.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhcC
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 86 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (434)
||||||||+||++||.+|++.+.+ |+++|+.+..++...++....+....... .. ..........+.+...+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~---v~ii~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~ 72 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAK---VLIIEKSPGTPYNSGCIPSPLLVEIAPHR----HE-FLPARLFKLVDQLKNRG 72 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSE---EEEESSSSHHHHHHSHHHHHHHHHHHHHH----HH-HHHHHHGHHHHHHHHHT
T ss_pred CEEEEecHHHHHHHHHHHhcCCCe---EEEEecccccccccccccccccccccccc----cc-cccccccccccccccce
Confidence 799999999999999999988876 99999886533332222221111100000 00 00000001122335678
Q ss_pred cEEEcCCeeEEEECCCCEE----------EccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHH
Q 013914 87 IELILSTEIVRADIASKTL----------LSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVE 156 (434)
Q Consensus 87 v~~~~~~~v~~i~~~~~~v----------~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~ 156 (434)
+++..+..+.+++...+.+ ...++.++.||+||+|||+.|+.|+ ++|.+ ..+......+++.+.+
T Consensus 73 v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~---i~g~~--~~~~~~~~~~~~~~~~ 147 (201)
T PF07992_consen 73 VEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPN---IPGEE--VAYFLRGVDDAQRFLE 147 (201)
T ss_dssp HEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEES---STTTT--TECBTTSEEHHHHHHT
T ss_pred EEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccceee---cCCCc--cccccccccccccccc
Confidence 9998878999999888842 2234568999999999999988887 56642 2222244455555555
Q ss_pred HHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCC
Q 013914 157 AIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 236 (434)
Q Consensus 157 ~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~ 236 (434)
.+. .+++++|||
T Consensus 148 ~~~--~~~~v~VvG------------------------------------------------------------------ 159 (201)
T PF07992_consen 148 LLE--SPKRVAVVG------------------------------------------------------------------ 159 (201)
T ss_dssp HSS--TTSEEEEES------------------------------------------------------------------
T ss_pred ccc--ccccccccc------------------------------------------------------------------
Confidence 444 245999999
Q ss_pred CcEEEEEeCCCcEEECCEEEEcccCccChhh-hhccccc-cCCcEEeCCCCCCCCCcEEEeccccccc
Q 013914 237 GEVKEVKLKDGRTLEADIVVVGVGGRPLISL-FKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFP 302 (434)
Q Consensus 237 g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~-~~~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~ 302 (434)
...+ -..++.+ ++|++.||+++||+.|||||+|||++.+
T Consensus 160 ---------------------------~~~l~~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~ 200 (201)
T PF07992_consen 160 ---------------------------TEFLAEKLGVELDENGFIKVDENLQTSVPGIYAAGDCAGIY 200 (201)
T ss_dssp ---------------------------TTTSTHHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGBEES
T ss_pred ---------------------------ccccccccccccccccccccccccccccccccccccccccC
Confidence 2222 2345666 6899999999999999999999999865
No 84
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.78 E-value=4.8e-17 Score=147.01 Aligned_cols=292 Identities=12% Similarity=0.156 Sum_probs=184.6
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCcc----------ccCCCCCCCC-------
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKA----------YLFPEGTARL------- 63 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~----------~~~~~~~~~~------- 63 (434)
||++.+|+|.||-||+-|+.|+.|.+.+. .+...+|+.+.+.|...++..+ +.....+...
T Consensus 1 ~~~~~~DliGIG~GPfNL~LA~ll~e~~~--~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL 78 (436)
T COG3486 1 MMAEVLDLIGIGIGPFNLSLAALLEEHSG--LKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYL 78 (436)
T ss_pred CCCcceeeEEEccCchHHHHHHHhccccC--cceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHH
Confidence 78899999999999999999999998752 2389999998877765444211 1111111100
Q ss_pred ------CCccc----ccCCCCCCCChhhHhhcCcEEEcCCeeE---EEECCCCE---EEccCCcEEEcceEEEecCCCcc
Q 013914 64 ------PGFHV----CVGSGGERLLPEWYKEKGIELILSTEIV---RADIASKT---LLSATGLIFKYQILVIATGSTVL 127 (434)
Q Consensus 64 ------~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~v~---~i~~~~~~---v~~~~~~~~~~d~lvlAtG~~~~ 127 (434)
-.|.. .....++..+-.|....--.+..+.+|+ +++.+... +.+.++..++++.||+.+|.+|+
T Consensus 79 ~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~ 158 (436)
T COG3486 79 HEHGRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPY 158 (436)
T ss_pred HHcchHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcC
Confidence 00000 0000112233344444446677788888 44444332 55667778999999999999999
Q ss_pred cccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhC----CCeEEEEccCCccCCc--
Q 013914 128 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN----NIDVSMVYPEPWCMPR-- 201 (434)
Q Consensus 128 ~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~----g~~v~lv~~~~~~~~~-- 201 (434)
+|+. +.....+.+++...+. .+. ..+. ..++|.|||+|.+|.|+-..|... ..++.|+.|+..+.|-
T Consensus 159 IP~~--f~~l~~~~vfHss~~~--~~~-~~~~--~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~ 231 (436)
T COG3486 159 IPPC--FRSLIGERVFHSSEYL--ERH-PELL--QKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDY 231 (436)
T ss_pred CChH--HhCcCccceeehHHHH--Hhh-HHhh--cCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCcccc
Confidence 9986 4455456777654332 111 1121 344599999999999998887654 3468889998776542
Q ss_pred ------cCCHHHH------------------------------HHHHHHH-------HhcCcEEEcCCeEEEEEecCCCc
Q 013914 202 ------LFTADIA------------------------------AFYEGYY-------ANKGIKIIKGTVAVGFTTNADGE 238 (434)
Q Consensus 202 ------~~~~~~~------------------------------~~~~~~l-------~~~GV~~~~~~~v~~i~~~~~g~ 238 (434)
.|.++.. ..+.+.| .+..|.++.++.+..++...+|+
T Consensus 232 Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~ 311 (436)
T COG3486 232 SKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGR 311 (436)
T ss_pred chhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCce
Confidence 1222221 1111111 13468899999999999866665
Q ss_pred EEEEEeCC-----CcEEECCEEEEcccCccChh-hh---hccccc-cCCcEEeCCCCCCC-----CCcEEEeccccccc
Q 013914 239 VKEVKLKD-----GRTLEADIVVVGVGGRPLIS-LF---KGQVAE-NKGGIETDDFFKTS-----ADDVYAVGDVATFP 302 (434)
Q Consensus 239 v~~v~~~~-----g~~~~~D~vi~a~G~~p~~~-~~---~~~~~~-~~g~i~vd~~~~t~-----~~~iya~GD~~~~~ 302 (434)
..+.+.. ..+++.|.||+|||++.... ++ .+.+.. ++|...|++.++.. .-.||+.|-+....
T Consensus 312 -~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~htH 389 (436)
T COG3486 312 -YRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHTH 389 (436)
T ss_pred -EEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEeccccccc
Confidence 3444422 24788999999999874443 33 223344 67899999877651 23699999766543
No 85
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.78 E-value=1.9e-18 Score=160.72 Aligned_cols=248 Identities=16% Similarity=0.203 Sum_probs=135.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccc-cCCCCCCCC-----C-------CcccccC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAY-LFPEGTARL-----P-------GFHVCVG 71 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~-~~~~~~~~~-----~-------~~~~~~~ 71 (434)
.+|+|+||.||++|+.|..|.+.+ ..++..+|+.+.+.|...++..+. +.......+ | .|-...+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~--~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~ 79 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHG--DLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG 79 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH-----EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcC--CCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence 589999999999999999999986 233999999988777654432111 111100110 0 0000000
Q ss_pred C--------------CCCCCChhhHh-hcCcEEEcCCeeEEEECCCC------EEEcc----CCcEEEcceEEEecCCCc
Q 013914 72 S--------------GGERLLPEWYK-EKGIELILSTEIVRADIASK------TLLSA----TGLIFKYQILVIATGSTV 126 (434)
Q Consensus 72 ~--------------~~~~~~~~~~~-~~~v~~~~~~~v~~i~~~~~------~v~~~----~~~~~~~d~lvlAtG~~~ 126 (434)
. .++..+..|+. +..-.+..+.+|+.|.+... +|.+. ++.++.++.||+|||..|
T Consensus 80 rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P 159 (341)
T PF13434_consen 80 RLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQP 159 (341)
T ss_dssp -HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE
T ss_pred ChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCC
Confidence 0 00111222222 23444777889999987653 35442 346899999999999999
Q ss_pred ccccCCCCCCCC-CCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCC--eEEEEccCCccCCc--
Q 013914 127 LRLTDFGVEGAD-AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI--DVSMVYPEPWCMPR-- 201 (434)
Q Consensus 127 ~~~~~~~~~g~~-~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~--~v~lv~~~~~~~~~-- 201 (434)
..|+. +.... .+.+++..++.....- ....++|+|||+|.+|.|++..|.+.+. +|+++.|++.+.+.
T Consensus 160 ~iP~~--~~~~~~~~~v~Hss~~~~~~~~-----~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~ 232 (341)
T PF13434_consen 160 RIPEW--FQDLPGSPRVFHSSEYLSRIDQ-----SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDD 232 (341)
T ss_dssp ---GG--GGGGTT-TTEEEGGGHHHHHT----------EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB---
T ss_pred CCCcc--hhhcCCCCCEEEehHhhhcccc-----ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCcc
Confidence 98875 33333 3778877665443211 1257899999999999999999998874 89999998765431
Q ss_pred ------cCCHH-------------------------------HHHHHHHH------HHhcCcEEEcCCeEEEEEecCCCc
Q 013914 202 ------LFTAD-------------------------------IAAFYEGY------YANKGIKIIKGTVAVGFTTNADGE 238 (434)
Q Consensus 202 ------~~~~~-------------------------------~~~~~~~~------l~~~GV~~~~~~~v~~i~~~~~g~ 238 (434)
.|+++ +.+.+.+. ..+..+.++.+++|+.++..++|.
T Consensus 233 s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~ 312 (341)
T PF13434_consen 233 SPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGG 312 (341)
T ss_dssp -CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SS
T ss_pred ccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCE
Confidence 23332 22222111 123458899999999998866543
Q ss_pred EEEEEeCC---C--cEEECCEEEEcccCc
Q 013914 239 VKEVKLKD---G--RTLEADIVVVGVGGR 262 (434)
Q Consensus 239 v~~v~~~~---g--~~~~~D~vi~a~G~~ 262 (434)
..+.+.+ + .++++|.||+|||++
T Consensus 313 -~~l~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 313 -VRLTLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp -EEEEEEETTT--EEEEEESEEEE---EE
T ss_pred -EEEEEEECCCCCeEEEecCEEEEcCCcc
Confidence 3455543 2 468899999999974
No 86
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.77 E-value=2e-18 Score=150.63 Aligned_cols=177 Identities=23% Similarity=0.328 Sum_probs=102.3
Q ss_pred EEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCCCccCccccCCC---CCCCCCCc---ccc-----------
Q 013914 9 VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YERPALSKAYLFPE---GTARLPGF---HVC----------- 69 (434)
Q Consensus 9 vIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~---~~~----------- 69 (434)
+|||||++||++|.+|.++|.++ |+|||+++..+ |........+..+. ..+.++.+ ...
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~--v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDP--VVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDF 78 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-----EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSS
T ss_pred CEECcCHHHHHHHHHHHhCCCCc--EEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCccc
Confidence 79999999999999999998754 99999996532 11000000011111 00111111 000
Q ss_pred -cCCCCCCCChhhHhhcCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCC--CcccccCCCCCC-CCCCCeE
Q 013914 70 -VGSGGERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGS--TVLRLTDFGVEG-ADAKNIF 143 (434)
Q Consensus 70 -~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~--~~~~~~~~~~~g-~~~~~v~ 143 (434)
........+..+.++.++++..++.|.++..+.. .|++.+++++.+|+||+|||. .|+.|+ +++ ... ..+
T Consensus 79 ~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~---~~g~~~~-~~~ 154 (203)
T PF13738_consen 79 PSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPD---IPGSAFR-PII 154 (203)
T ss_dssp EBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S----TTGGCS-EEE
T ss_pred CCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCccc---ccccccc-ceE
Confidence 0000112344455667889999999999987765 577777778999999999995 677666 566 332 455
Q ss_pred EecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013914 144 YLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 198 (434)
Q Consensus 144 ~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~ 198 (434)
+.....+.. ...+++|+|||+|.+|++++..|.+.|.+|+++.|.+.+
T Consensus 155 h~~~~~~~~-------~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~~ 202 (203)
T PF13738_consen 155 HSADWRDPE-------DFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPIW 202 (203)
T ss_dssp EGGG-STTG-------GCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS---
T ss_pred ehhhcCChh-------hcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCCC
Confidence 554443332 226899999999999999999999999999999998753
No 87
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.75 E-value=2.6e-18 Score=170.03 Aligned_cols=286 Identities=22% Similarity=0.272 Sum_probs=170.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
-++|.|||+|||||+||-.|.+.|+. |+|+||.+..+ +++. ..+|....+.. ..+.-.+.+.+
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~---v~vyer~dr~g--------gll~----ygipnmkldk~--vv~rrv~ll~~ 1847 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHT---VTVYERSDRVG--------GLLM----YGIPNMKLDKF--VVQRRVDLLEQ 1847 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcE---EEEEEecCCcC--------ceee----ecCCccchhHH--HHHHHHHHHHh
Confidence 47999999999999999999999986 99999997632 1221 11222221100 01233456677
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCC-cccccCCCCCCCCCCCeEEecCHHHHHHHHHHHH----
Q 013914 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIK---- 159 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~---- 159 (434)
.|++|+.++++- +.+.+ |+-.-.+|.+|+|+|+. |+..| ++|.+.++++..-.+.... -+..+.
T Consensus 1848 egi~f~tn~eig------k~vs~-d~l~~~~daiv~a~gst~prdlp---v~grd~kgv~fame~l~~n-tk~lld~~~d 1916 (2142)
T KOG0399|consen 1848 EGIRFVTNTEIG------KHVSL-DELKKENDAIVLATGSTTPRDLP---VPGRDLKGVHFAMEFLEKN-TKSLLDSVLD 1916 (2142)
T ss_pred hCceEEeecccc------ccccH-HHHhhccCeEEEEeCCCCCcCCC---CCCccccccHHHHHHHHHh-HHhhhccccc
Confidence 899999876542 22222 33345789999999974 77777 6888888876433322221 111111
Q ss_pred ----hCCCCcEEEECCCHHHHHHHHHHHhCCCe-EEEEccCCcc---------CCc---cCCHHHH-HHHHHHHHhcCcE
Q 013914 160 ----AKKNGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPWC---------MPR---LFTADIA-AFYEGYYANKGIK 221 (434)
Q Consensus 160 ----~~~~~~v~ViG~g~~~~e~a~~l~~~g~~-v~lv~~~~~~---------~~~---~~~~~~~-~~~~~~l~~~GV~ 221 (434)
..++|+|+|||||.+|.++...-.+.|++ |.-++--|.+ .|+ .|.-+.. +..+ +..|-+
T Consensus 1917 ~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~---~~~g~d 1993 (2142)
T KOG0399|consen 1917 GNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAK---EHYGSD 1993 (2142)
T ss_pred cceeccCCCeEEEECCCCccccccccchhhccceecceeecCCCCcccCCCCCCccCceEEEeecchHHHH---HHhCCC
Confidence 12689999999999999999888888854 3323222221 111 1100110 1111 111221
Q ss_pred EEcCCe-EEEEEecCCCcEEE------------------EEeCCC-cEEECCEEEEcccCccChhhhh--ccccc-cCCc
Q 013914 222 IIKGTV-AVGFTTNADGEVKE------------------VKLKDG-RTLEADIVVVGVGGRPLISLFK--GQVAE-NKGG 278 (434)
Q Consensus 222 ~~~~~~-v~~i~~~~~g~v~~------------------v~~~~g-~~~~~D~vi~a~G~~p~~~~~~--~~~~~-~~g~ 278 (434)
.+.-+- -+++..+++|.+.+ .+..+. +.++||+|++|.|+..+..... .++.. .++.
T Consensus 1994 pr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsn 2073 (2142)
T KOG0399|consen 1994 PRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSN 2073 (2142)
T ss_pred cceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCcccc
Confidence 111110 11222233333332 222222 4689999999999875544332 23444 3444
Q ss_pred EEe-CCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhc
Q 013914 279 IET-DDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 331 (434)
Q Consensus 279 i~v-d~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 331 (434)
|.. ++.+.|.++.|||+|||-.... ++.+|+++|+.+|+.+-.
T Consensus 2074 i~t~~~~y~t~v~~vfaagdcrrgqs----------lvvwai~egrq~a~~vd~ 2117 (2142)
T KOG0399|consen 2074 ILTPKDSYSTDVAKVFAAGDCRRGQS----------LVVWAIQEGRQAARQVDE 2117 (2142)
T ss_pred ccCCCccccccccceeecccccCCce----------EEEEEehhhhHHHHHHHH
Confidence 443 4568889999999999998763 455678999999998764
No 88
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.74 E-value=5.3e-17 Score=156.65 Aligned_cols=187 Identities=18% Similarity=0.243 Sum_probs=120.4
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCCCcc-CccccCCCCCCCCCCcccc--cC----
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YERPAL-SKAYLFPEGTARLPGFHVC--VG---- 71 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~--~~---- 71 (434)
|+++++||+|||||++||++|.+|+++|.++ ++++||++..+ |+..+. +-.+..+.....++.+.+. ..
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~--~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~ 81 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPD--FVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPF 81 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHcCCCc--EEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCc
Confidence 4567899999999999999999999999765 99999997532 221111 1111111112233333321 00
Q ss_pred CCCCCCChhhHhhcCcE--EEcCCeeEEEECCCC----EEEccCCcE--EEcceEEEecC--CCcccccCCCCCCCCC--
Q 013914 72 SGGERLLPEWYKEKGIE--LILSTEIVRADIASK----TLLSATGLI--FKYQILVIATG--STVLRLTDFGVEGADA-- 139 (434)
Q Consensus 72 ~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~~----~v~~~~~~~--~~~d~lvlAtG--~~~~~~~~~~~~g~~~-- 139 (434)
........++++++++. +...+.|..++.+.+ +|+++++.+ +.+|+||+||| +.|+.|+ ++|.+.
T Consensus 82 ~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~---~~G~~~f~ 158 (443)
T COG2072 82 AEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPD---FAGLDEFK 158 (443)
T ss_pred ccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCC---CCCccCCC
Confidence 00112334455555433 333444554555443 366666654 55999999999 4677777 455432
Q ss_pred CCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC
Q 013914 140 KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM 199 (434)
Q Consensus 140 ~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~ 199 (434)
..+++..+..+.+.+ .+|+|+|||+|.+|++++..|.+.|.+|+++.|++...
T Consensus 159 g~~~HS~~~~~~~~~-------~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~ 211 (443)
T COG2072 159 GRILHSADWPNPEDL-------RGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHI 211 (443)
T ss_pred ceEEchhcCCCcccc-------CCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCce
Confidence 335555555554443 79999999999999999999999999999999986543
No 89
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.74 E-value=6.1e-16 Score=147.16 Aligned_cols=174 Identities=20% Similarity=0.179 Sum_probs=122.4
Q ss_pred HHHHHHHHHhCCCCcEEEECCCHHHHHHH-HHHH----hCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcC
Q 013914 151 ADKLVEAIKAKKNGKAVVVGGGYIGLELS-AALK----INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKG 225 (434)
Q Consensus 151 ~~~~~~~l~~~~~~~v~ViG~g~~~~e~a-~~l~----~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~ 225 (434)
...+.+.++......=+|++.+.+|+|.+ ..+. +.|.+|+++...+..++. .++.+.+.+.+++.|++++.+
T Consensus 203 ~~~l~~~l~~~~~~~~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG---~rL~~aL~~~l~~~Gv~I~~g 279 (422)
T PRK05329 203 REALADALKPLAGDAEAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPG---LRLQNALRRAFERLGGRIMPG 279 (422)
T ss_pred HHHHHHHHHHhcCCCCEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCch---HHHHHHHHHHHHhCCCEEEeC
Confidence 34444555443334447888999999998 6665 479999999988888874 478899999999999999999
Q ss_pred CeEEEEEecCCCcEEEEEeCCCc--EEECCEEEEcccCccChhhh-----------hccc------------------cc
Q 013914 226 TVAVGFTTNADGEVKEVKLKDGR--TLEADIVVVGVGGRPLISLF-----------KGQV------------------AE 274 (434)
Q Consensus 226 ~~v~~i~~~~~g~v~~v~~~~g~--~~~~D~vi~a~G~~p~~~~~-----------~~~~------------------~~ 274 (434)
++|.+++.. ++.+..+...+|+ .+++|.+|+|+|+.+...+. ...+ .+
T Consensus 280 ~~V~~v~~~-~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~ 358 (422)
T PRK05329 280 DEVLGAEFE-GGRVTAVWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPF 358 (422)
T ss_pred CEEEEEEEe-CCEEEEEEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCch
Confidence 999999863 4555555555553 58999999999976554331 0000 11
Q ss_pred cCCcEEeCCCCCC-------CCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhcc
Q 013914 275 NKGGIETDDFFKT-------SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 275 ~~g~i~vd~~~~t-------~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 332 (434)
..-+|.+|+++|. ..+|+||+|++.+.+++.... .....|+..|..|+++|...
T Consensus 359 ~~~GV~~d~~~~p~~~~g~~~~~nl~a~G~vl~g~d~~~~~----~g~Gva~~ta~~a~~~~~~~ 419 (422)
T PRK05329 359 LQFGVATDATLRPLDSQGGPVIENLYAAGAVLGGYDPIREG----CGSGVALATALHAAEQIAEE 419 (422)
T ss_pred hhcCceECCCcCcccCCCCeeccceEEeeehhcCCchHHhC----CCchhHHHHHHHHHHHHHHh
Confidence 2234667766664 589999999999988763221 11235667888888888754
No 90
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.64 E-value=4.3e-15 Score=141.31 Aligned_cols=238 Identities=18% Similarity=0.233 Sum_probs=141.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCCC--------ccCccc--cCCCCCCCCCCccccc
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YERP--------ALSKAY--LFPEGTARLPGFHVCV 70 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~--~~~~--------~~~~~~--~~~~~~~~~~~~~~~~ 70 (434)
+..++|+|||||+|||++|+.|.+.|.+ ++++||.+..+ |..+ .+-+.+ -.+.....++.+.+..
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~---v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~ 80 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHE---VVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPE 80 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCC---ceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcc
Confidence 4578999999999999999999999987 99999998742 1111 000000 0111122233332211
Q ss_pred C-C-------CCCCCChhhHhhcCc--EEEcCCeeEEEECCCC---EEEccCC----cEEEcceEEEecCCC--cccccC
Q 013914 71 G-S-------GGERLLPEWYKEKGI--ELILSTEIVRADIASK---TLLSATG----LIFKYQILVIATGST--VLRLTD 131 (434)
Q Consensus 71 ~-~-------~~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~~---~v~~~~~----~~~~~d~lvlAtG~~--~~~~~~ 131 (434)
. . .....+.++.+..++ .+.+++++..++...+ .|.+.+. ...-+|.|++|||-. |+.|..
T Consensus 81 ~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~ 160 (448)
T KOG1399|consen 81 RDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQI 160 (448)
T ss_pred cCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcC
Confidence 1 0 011223344444554 5677777888887652 3444333 367899999999965 776664
Q ss_pred CCC--CCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC--CccCCccCCHHH
Q 013914 132 FGV--EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE--PWCMPRLFTADI 207 (434)
Q Consensus 132 ~~~--~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~--~~~~~~~~~~~~ 207 (434)
++. +.. ...+++.++......+ ..++|+|||+|.+|+|++..+.+...+|++..+. ....+ .
T Consensus 161 ~g~~~~~f-~G~~iHS~~Yk~~e~f-------~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~~~~~~~~~----~-- 226 (448)
T KOG1399|consen 161 PGPGIESF-KGKIIHSHDYKSPEKF-------RDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKVHVEP----P-- 226 (448)
T ss_pred CCCchhhc-CCcceehhhccCcccc-------cCceEEEECCCccHHHHHHHHHHhccCcceeeecccccccc----c--
Confidence 331 111 2345555554433332 6799999999999999999999988888877541 00000 0
Q ss_pred HHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhc
Q 013914 208 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG 270 (434)
Q Consensus 208 ~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~ 270 (434)
..+ ..++..+.. ++.+.. ++ .+.+.++....+|.+|+|||+.=...+++.
T Consensus 227 -----~~~-~~~~~~~~~--i~~~~e--~~---~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~ 276 (448)
T KOG1399|consen 227 -----EIL-GENLWQVPS--IKSFTE--DG---SVFEKGGPVERVDRIIFCTGYKYKFPFLET 276 (448)
T ss_pred -----cee-ecceEEccc--cccccC--cc---eEEEcCceeEEeeeEEEeeeeEeecceecc
Confidence 000 011222211 444432 33 344566677889999999998765555543
No 91
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.61 E-value=4.5e-14 Score=134.19 Aligned_cols=274 Identities=15% Similarity=0.158 Sum_probs=147.4
Q ss_pred CCcEEEECCCHHHHHHHHHHH-HcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 5 SFKYVILGGGVSAGYAAREFA-KQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~-~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
.++|+||||||||++||.+|. +.|.+ |+|+|+.+.+. +++....+...+.... ....+...+.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~---VtlfEk~p~pg--------GLvR~GVaPdh~~~k~-----v~~~f~~~~~ 102 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVK---VDIFEKLPNPY--------GLIRYGVAPDHIHVKN-----TYKTFDPVFL 102 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCe---EEEEecCCCCc--------cEEEEeCCCCCccHHH-----HHHHHHHHHh
Confidence 468999999999999999865 45665 99999997632 1221111111111100 0011122233
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCC------CC-CCC----CCCeEEecCH----
Q 013914 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFG------VE-GAD----AKNIFYLREI---- 148 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~------~~-g~~----~~~v~~~~~~---- 148 (434)
..++++..+..+ ...+..++= .-.||.+|+|+|+.+..++++. +. |.+ ..++|...++
T Consensus 103 ~~~v~f~gnv~V------G~Dvt~eeL-~~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WY 175 (506)
T PTZ00188 103 SPNYRFFGNVHV------GVDLKMEEL-RNHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIFHARDLIYFY 175 (506)
T ss_pred hCCeEEEeeeEe------cCccCHHHH-HhcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEEehheEEEee
Confidence 456666533221 111222111 2379999999999865444110 00 222 2355533322
Q ss_pred -HHH-----HHHHHHHHhC-CCCcEEEECCCHHHHHHHHHHH--------------------hCC-CeEEEEccCCccCC
Q 013914 149 -DDA-----DKLVEAIKAK-KNGKAVVVGGGYIGLELSAALK--------------------INN-IDVSMVYPEPWCMP 200 (434)
Q Consensus 149 -~~~-----~~~~~~l~~~-~~~~v~ViG~g~~~~e~a~~l~--------------------~~g-~~v~lv~~~~~~~~ 200 (434)
.+. ......+... ..++++|||.|+.++++|..|. +.+ .+|+++.|....-.
T Consensus 176 Ng~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp~qa 255 (506)
T PTZ00188 176 NNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQS 255 (506)
T ss_pred cCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecCHHHh
Confidence 011 0111112111 3478999999999999998753 223 35777776532110
Q ss_pred cc-----------------C-CHH-----------------------HHHHHHHHHH----------hcCcEEEcCCeEE
Q 013914 201 RL-----------------F-TAD-----------------------IAAFYEGYYA----------NKGIKIIKGTVAV 229 (434)
Q Consensus 201 ~~-----------------~-~~~-----------------------~~~~~~~~l~----------~~GV~~~~~~~v~ 229 (434)
.+ + +.+ ..+.+.+..+ .+.+.+++...+.
T Consensus 256 aFT~kElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l~F~~sP~ 335 (506)
T PTZ00188 256 SFTNAELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFYFEIR 335 (506)
T ss_pred CCCHHHHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEEEEEccCCce
Confidence 00 0 000 1112222221 1346778888888
Q ss_pred EEEecCCCcEEEEEeC-----------CC--cEEECCEEEEcccCccChhhhhccccccCCcEEeCCCCCC--CCCcEEE
Q 013914 230 GFTTNADGEVKEVKLK-----------DG--RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKT--SADDVYA 294 (434)
Q Consensus 230 ~i~~~~~g~v~~v~~~-----------~g--~~~~~D~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t--~~~~iya 294 (434)
+|.. .++++.++++. .| ++++||+|+-|+|++...- + ++.++ ..+. |...+. ..|++|+
T Consensus 336 ei~~-~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p~--~-g~pFd-~~~~-n~~grv~~~~~g~Y~ 409 (506)
T PTZ00188 336 QIRP-IDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSNF--A-ENLYN-QSVQ-MFKEDIGQHKFAIFK 409 (506)
T ss_pred EEEC-CCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCCC--C-CCCcc-ccCC-CCCCcccCCCCCcEE
Confidence 8875 34677777765 23 3689999999999875421 1 23333 1122 122222 3799999
Q ss_pred ecccccccccccC
Q 013914 295 VGDVATFPMKLYR 307 (434)
Q Consensus 295 ~GD~~~~~~~~~~ 307 (434)
+|-+..+|....+
T Consensus 410 ~GWiKrGP~GvIg 422 (506)
T PTZ00188 410 AGWFDKGPKGNIA 422 (506)
T ss_pred eeecCcCCCceec
Confidence 9999887765333
No 92
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.61 E-value=5.8e-14 Score=129.17 Aligned_cols=198 Identities=18% Similarity=0.320 Sum_probs=112.4
Q ss_pred EEEcceEEEecCCCcccccCCCCCCC-CCCCeEEecCHHHHHHHHH--------HHH---hCCCCcEEEE---CCCH---
Q 013914 112 IFKYQILVIATGSTVLRLTDFGVEGA-DAKNIFYLREIDDADKLVE--------AIK---AKKNGKAVVV---GGGY--- 173 (434)
Q Consensus 112 ~~~~d~lvlAtG~~~~~~~~~~~~g~-~~~~v~~~~~~~~~~~~~~--------~l~---~~~~~~v~Vi---G~g~--- 173 (434)
++....+|+|||-.++.+..+.--|. ..++|++.- +++++.. .++ ..++++|+.| |+-.
T Consensus 298 e~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~l---ElErml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~ 374 (622)
T COG1148 298 ELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITNL---ELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQV 374 (622)
T ss_pred EEEeceEEEEccccccCcchhhhcCCCCCcchhhHH---HHHHHhccCCCCCceEEecCCCCCCceEEEEEEecCcCccc
Confidence 57888999999988765432100011 124444322 2222221 111 1257888774 5432
Q ss_pred -----------HHHHHHHHHHhC--CCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEE
Q 013914 174 -----------IGLELSAALKIN--NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 240 (434)
Q Consensus 174 -----------~~~e~a~~l~~~--g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~ 240 (434)
.++.-|....+. ..+|++..-.-+- +....-++..+.-++.||+|+.+. +.+|...+++. .
T Consensus 375 ~n~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiRa----fG~~yEefY~~~Q~~~gV~fIRGr-vaei~e~p~~~-l 448 (622)
T COG1148 375 GNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRA----FGKDYEEFYVRSQEDYGVRFIRGR-VAEIAEFPKKK-L 448 (622)
T ss_pred CChhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEeec----cCccHHHHHHhhhhhhchhhhcCC-hHHheeCCCCe-e
Confidence 112222333332 3566666543222 344445555555558899999885 66776656665 2
Q ss_pred EEEeCC---C--cEEECCEEEEcccCccChhh--hh--ccccc-cCCcEEeC-CCCC---CCCCcEEEeccccccccccc
Q 013914 241 EVKLKD---G--RTLEADIVVVGVGGRPLISL--FK--GQVAE-NKGGIETD-DFFK---TSADDVYAVGDVATFPMKLY 306 (434)
Q Consensus 241 ~v~~~~---g--~~~~~D~vi~a~G~~p~~~~--~~--~~~~~-~~g~i~vd-~~~~---t~~~~iya~GD~~~~~~~~~ 306 (434)
.|...| | .++++|+|++++|..|.... +. .++.. ++|++... +.++ |+.++||.+|-|.++
T Consensus 449 ~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqgP----- 523 (622)
T COG1148 449 IVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQGP----- 523 (622)
T ss_pred EEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccCC-----
Confidence 344333 3 47899999999999885432 21 25555 57777655 5554 588999999977765
Q ss_pred CcceecccHHHHHHHHHHHHHHH
Q 013914 307 REMRRVEHVDHARKSAEQAVKTI 329 (434)
Q Consensus 307 ~~~~~~~~~~~A~~~g~~aa~~i 329 (434)
..+..++.||..||...
T Consensus 524 ------kdI~~siaqa~aAA~kA 540 (622)
T COG1148 524 ------KDIADSIAQAKAAAAKA 540 (622)
T ss_pred ------ccHHHHHHHhHHHHHHH
Confidence 34555566666555443
No 93
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.55 E-value=1.4e-13 Score=123.11 Aligned_cols=290 Identities=17% Similarity=0.215 Sum_probs=161.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+|.|||+||||+.+|..|.++ .+.+.|.|+|+.+. ||. +....-.+..|.... ....+...+++
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~-~~~~~Vdi~Ek~Pv-PFG-------LvRyGVAPDHpEvKn-----vintFt~~aE~ 85 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKR-HPNAHVDIFEKLPV-PFG-------LVRYGVAPDHPEVKN-----VINTFTKTAEH 85 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhc-CCCCeeEeeecCCc-ccc-------eeeeccCCCCcchhh-----HHHHHHHHhhc
Confidence 46999999999999999999986 34567999999975 222 111111122222111 01233444455
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCC-cccccCCCCCCCCCCCeEEecCHHHHHHHHHHHH----
Q 013914 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIK---- 159 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~---- 159 (434)
....++-+..+ .+.+.+.. -+-.||.+|||.|+. ++... |||.+..+|++.+.+ ..+.+-+.
T Consensus 86 ~rfsf~gNv~v------G~dvsl~e-L~~~ydavvLaYGa~~dR~L~---IPGe~l~~V~Saref---v~Wyng~P~~~~ 152 (468)
T KOG1800|consen 86 ERFSFFGNVKV------GRDVSLKE-LTDNYDAVVLAYGADGDRRLD---IPGEELSGVISAREF---VGWYNGLPENQN 152 (468)
T ss_pred cceEEEeccee------cccccHHH-HhhcccEEEEEecCCCCcccC---CCCcccccceehhhh---hhhccCCCcccc
Confidence 55555554332 11121111 134699999999985 55555 799888888866543 33333111
Q ss_pred ---hCCCCcEEEECCCHHHHHHHHHHHhC----------------------CCeEEEEccCCccCCcc------------
Q 013914 160 ---AKKNGKAVVVGGGYIGLELSAALKIN----------------------NIDVSMVYPEPWCMPRL------------ 202 (434)
Q Consensus 160 ---~~~~~~v~ViG~g~~~~e~a~~l~~~----------------------g~~v~lv~~~~~~~~~~------------ 202 (434)
......++|||.|..++++|..|... =.+|+++.|...+...+
T Consensus 153 le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~~~l~ 232 (468)
T KOG1800|consen 153 LEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREVLELP 232 (468)
T ss_pred cCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHHHHHhCCC
Confidence 12467999999999999999887532 13577776653221000
Q ss_pred ---------------C----------CHHHHHHHHHHHHhc---------CcE---EEcCCeEEEEEecCCC----cEE-
Q 013914 203 ---------------F----------TADIAAFYEGYYANK---------GIK---IIKGTVAVGFTTNADG----EVK- 240 (434)
Q Consensus 203 ---------------~----------~~~~~~~~~~~l~~~---------GV~---~~~~~~v~~i~~~~~g----~v~- 240 (434)
+ .+++.+.+.+.+.++ +.+ +.+.....+|..+.++ +..
T Consensus 233 ~~~~r~~~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~~~~~~v~~~~~~~ 312 (468)
T KOG1800|consen 233 GARPRLDPVDFSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAILPGADGVSGVRFQV 312 (468)
T ss_pred CcccccCchhccceeCCcccccccCchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhccCcccccceEEEe
Confidence 0 112333333333331 111 1111122233332122 000
Q ss_pred -------EEEeCCCcEEECCEEEEcccCccChhhhhccccc-cCCcEEeCCCCCCC----CCcEEEecccccccccccCc
Q 013914 241 -------EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTS----ADDVYAVGDVATFPMKLYRE 308 (434)
Q Consensus 241 -------~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~----~~~iya~GD~~~~~~~~~~~ 308 (434)
.+.+.+-++++|++++.++|++... ++.++.+ ++.++.-|...+.. .|++|++|-|..+|.
T Consensus 313 t~l~~~~~~~tg~~e~~p~~l~i~sIGYks~p--v~~gipFd~~kgvv~n~~GrV~~s~~~pglY~sGW~k~GP~----- 385 (468)
T KOG1800|consen 313 TILEGTQAVPTGAFETLPCGLLIRSIGYKSVP--VDSGIPFDDKKGVVPNVNGRVLVSGCSPGLYASGWVKHGPT----- 385 (468)
T ss_pred eeehhhcccccCceEeeccceeEeeeeecccc--cCCCCCcccccCcccCCCceEEeeccCCceEEEeeeccCCc-----
Confidence 1111122478999999999975322 2335555 33445555554442 599999999988765
Q ss_pred ceecccHHHHHHHHHHHHHHHhcc
Q 013914 309 MRRVEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 309 ~~~~~~~~~A~~~g~~aa~~i~~~ 332 (434)
..++.+++++..++..|...
T Consensus 386 ----GvIattm~dAf~v~d~I~qD 405 (468)
T KOG1800|consen 386 ----GVIATTMQDAFEVADTIVQD 405 (468)
T ss_pred ----ceeeehhhhHHHHHHHHHHH
Confidence 34555666777777777654
No 94
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.53 E-value=1.6e-13 Score=99.76 Aligned_cols=80 Identities=34% Similarity=0.620 Sum_probs=74.5
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL 244 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~ 244 (434)
+++|||+|++|+|+|..|.+.|.+|+++++.+.+++ .+++++.+.+.+.+++.||++++++.+++++.++++ +. |++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~ 77 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLP-GFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTL 77 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSST-TSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhh-hcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEE
Confidence 589999999999999999999999999999999995 489999999999999999999999999999986667 65 888
Q ss_pred CCC
Q 013914 245 KDG 247 (434)
Q Consensus 245 ~~g 247 (434)
+||
T Consensus 78 ~~g 80 (80)
T PF00070_consen 78 EDG 80 (80)
T ss_dssp ETS
T ss_pred ecC
Confidence 886
No 95
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.46 E-value=1.9e-12 Score=117.90 Aligned_cols=81 Identities=12% Similarity=0.094 Sum_probs=61.6
Q ss_pred HHHHhCCCeEEEEccCCccCCc-cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEc
Q 013914 180 AALKINNIDVSMVYPEPWCMPR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVG 258 (434)
Q Consensus 180 ~~l~~~g~~v~lv~~~~~~~~~-~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a 258 (434)
..+.+.|.+.+.-+ ..+..|. .-..++.+.+...+++.||+++++++|.+++.++ ....+.+.+|+++.||.+|+|
T Consensus 86 ~~~e~~Gi~~~e~~-~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f~l~t~~g~~i~~d~lilA 162 (408)
T COG2081 86 DWVEGLGIALKEED-LGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGFRLDTSSGETVKCDSLILA 162 (408)
T ss_pred HHHHhcCCeeEEcc-CceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceEEEEcCCCCEEEccEEEEe
Confidence 44455666544433 3344443 3356889999999999999999999999999833 447889999989999999999
Q ss_pred cc--Ccc
Q 013914 259 VG--GRP 263 (434)
Q Consensus 259 ~G--~~p 263 (434)
+| ..|
T Consensus 163 tGG~S~P 169 (408)
T COG2081 163 TGGKSWP 169 (408)
T ss_pred cCCcCCC
Confidence 99 555
No 96
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.32 E-value=2.9e-10 Score=107.12 Aligned_cols=125 Identities=18% Similarity=0.211 Sum_probs=87.9
Q ss_pred CccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCccChhhh---------
Q 013914 200 PRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLF--------- 268 (434)
Q Consensus 200 ~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g--~~~~~D~vi~a~G~~p~~~~~--------- 268 (434)
|......+.+.+.+.+++.|++++.+++|.++.. +++++..+.+.++ .++.+|.+|+|+|.--...++
T Consensus 258 PSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~-~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Ep 336 (419)
T TIGR03378 258 PSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEF-EGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEP 336 (419)
T ss_pred CCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEe-eCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhcCceeee
Confidence 3445667888899999999999999999999886 3566667776776 479999999999954111111
Q ss_pred --hcccc------------------ccCCcEEeCCCCCC-----CCCcEEEecccccccccccCcceecccHHHHHHHHH
Q 013914 269 --KGQVA------------------ENKGGIETDDFFKT-----SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAE 323 (434)
Q Consensus 269 --~~~~~------------------~~~g~i~vd~~~~t-----~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~ 323 (434)
+..+. .-.-+|.+|+++|. ..+|+||+|-+.++++++.... -...|+..|.
T Consensus 337 if~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~gc----G~GVai~Ta~ 412 (419)
T TIGR03378 337 IFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFEGC----GSGVAVSTAL 412 (419)
T ss_pred ccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChHhcCC----CchhHHHHHH
Confidence 11110 01246889999984 3899999999999887633221 1235666778
Q ss_pred HHHHHH
Q 013914 324 QAVKTI 329 (434)
Q Consensus 324 ~aa~~i 329 (434)
.|+++|
T Consensus 413 ~aa~~i 418 (419)
T TIGR03378 413 HAAEQI 418 (419)
T ss_pred HHHHhh
Confidence 888776
No 97
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.28 E-value=1.4e-09 Score=101.86 Aligned_cols=183 Identities=19% Similarity=0.283 Sum_probs=99.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC----CCCCCccCccccCCCC--CCCCCC----cc-cccC---
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA----PYERPALSKAYLFPEG--TARLPG----FH-VCVG--- 71 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~----~~~~~~~~~~~~~~~~--~~~~~~----~~-~~~~--- 71 (434)
++|+|||+|++|+.+|.+|.+.-.....|.|+|+.+.. +|........+-.+.. ....|. |. +..+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 68999999999999999999975444459999998763 3332111000000000 000011 00 0000
Q ss_pred ---------CCCC-------------CCChhhHhhcC---cEEEcCCeeEEEECCC----CEEEccCCcEEEcceEEEec
Q 013914 72 ---------SGGE-------------RLLPEWYKEKG---IELILSTEIVRADIAS----KTLLSATGLIFKYQILVIAT 122 (434)
Q Consensus 72 ---------~~~~-------------~~~~~~~~~~~---v~~~~~~~v~~i~~~~----~~v~~~~~~~~~~d~lvlAt 122 (434)
.... ..+..++++.. +.++.. +++.+.+.. ..+...+|....+|-+|+||
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~-~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat 160 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIRE-EATSVRQDTNAGGYLVTTADGPSEIADIIVLAT 160 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEee-eeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence 0000 00111112222 455553 555554442 23566778888999999999
Q ss_pred CCCcccccC--CCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCC--eEEEEccCC
Q 013914 123 GSTVLRLTD--FGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI--DVSMVYPEP 196 (434)
Q Consensus 123 G~~~~~~~~--~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~--~v~lv~~~~ 196 (434)
|..+..++. ..+++. +..+ .+...+..+ ..+. ...+|+|+|+|.+.++....|.+.|. ++|.+.|..
T Consensus 161 gh~~~~~~~~~~~~~~~--~~~i--a~~~~~~~l-d~v~--~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG 231 (474)
T COG4529 161 GHSAPPADPAARDLKGS--PRLI--ADPYPANAL-DGVD--ADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG 231 (474)
T ss_pred cCCCCCcchhhhccCCC--ccee--ccccCCccc-cccc--CCCceEEecCCchhHHHHHHHhccCCccceEEEeccc
Confidence 976543332 111221 1111 111111111 1111 24569999999999999999999874 688888764
No 98
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.27 E-value=2.9e-11 Score=112.83 Aligned_cols=224 Identities=17% Similarity=0.113 Sum_probs=112.1
Q ss_pred cCcEEEcCCeeEEEECCCC-E---EEcc-C-C--cEEEcceEEEecCCCcccccCC-CCCCCCCCCe-------EEecCH
Q 013914 85 KGIELILSTEIVRADIASK-T---LLSA-T-G--LIFKYQILVIATGSTVLRLTDF-GVEGADAKNI-------FYLREI 148 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~-~---v~~~-~-~--~~~~~d~lvlAtG~~~~~~~~~-~~~g~~~~~v-------~~~~~~ 148 (434)
.+|+++.+..+.++-.+++ . +.+. . + ..+.++.+|||||.--...... +-.+....++ ..+.++
T Consensus 147 p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~~TTNp~~~~GdGIamA~rAGa~v~Dl 226 (518)
T COG0029 147 PNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVADL 226 (518)
T ss_pred CCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCCcccccccCCCccccccHHHHHHHcCCeecCc
Confidence 5899999988877776666 2 2232 2 2 4678999999999753222110 0011100000 001111
Q ss_pred HHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc------CCH-HHHHHHHHHHHhcCcE
Q 013914 149 DDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------FTA-DIAAFYEGYYANKGIK 221 (434)
Q Consensus 149 ~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~------~~~-~~~~~~~~~l~~~GV~ 221 (434)
+-.|. ...+....+--..-+.+.++-.|.. .+-..+.+|++.+ -+. -+++.+...+++.|-+
T Consensus 227 EFvQF----------HPT~l~~~~~~~~LiSEAVRGEGA~-L~~~~GeRFm~~~~p~~ELAPRDVVARAI~~e~~~~g~~ 295 (518)
T COG0029 227 EFVQF----------HPTALYIPQRRAFLISEAVRGEGAI-LVNEDGERFMPDYHPRGELAPRDVVARAIDAEMKRGGAD 295 (518)
T ss_pred cceee----------ccceecCCCCccceeehhhhcCccE-EECCCCCccccCCCCccccchHHHHHHHHHHHHHhcCCe
Confidence 10000 0111111111111122333333322 1223445565431 122 3566778888887776
Q ss_pred EEcCCeEEEEEecCCCcEEEEEeCCCcEEEC-CEEEEcccCccChhhhhcccc--ccCCcEEeCCCCCCCCCcEEEeccc
Q 013914 222 IIKGTVAVGFTTNADGEVKEVKLKDGRTLEA-DIVVVGVGGRPLISLFKGQVA--ENKGGIETDDFFKTSADDVYAVGDV 298 (434)
Q Consensus 222 ~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~-D~vi~a~G~~p~~~~~~~~~~--~~~g~i~vd~~~~t~~~~iya~GD~ 298 (434)
++++.+ .+.. .. + + ++++. ...+...|..|.-+.++.-.. ..-|+|.||.+.||+.|++||+|.|
T Consensus 296 V~LD~s--~~~~---~~---~--~--~rFP~I~~~c~~~GiD~~r~~IPV~PaaHY~mGGI~vD~~GrTsi~gLYAiGEv 363 (518)
T COG0029 296 VFLDIS--HIPG---DF---F--E--RRFPTIYAACLKAGIDPTREPIPVVPAAHYTMGGIAVDANGRTSIPGLYAIGEV 363 (518)
T ss_pred EEEecc--CCCc---hh---h--h--hhCcHHHHHHHHcCCCcccCccCccchhheecccEEECCCCcccCcccEEeeee
Confidence 665532 1111 00 0 0 12221 122334565555444432211 2569999999999999999999999
Q ss_pred ccccccccCccee-cccHHHHHHHHHHHHHHHhccC
Q 013914 299 ATFPMKLYREMRR-VEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 299 ~~~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
+..- ..|..+. ..+...+.--|+.+|++|.+..
T Consensus 364 A~TG--lHGANRLASNSLLE~vV~g~~aA~~i~~~~ 397 (518)
T COG0029 364 ACTG--LHGANRLASNSLLECLVFGKRAAEDIAGRL 397 (518)
T ss_pred cccc--cccchhhhhhhHHHHHHHHHHHHHHhhccc
Confidence 8642 2333322 1345566677888888888764
No 99
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.18 E-value=6.7e-11 Score=112.54 Aligned_cols=85 Identities=20% Similarity=0.268 Sum_probs=54.0
Q ss_pred HHHHHHHhCCCeEEEEccCCccCCcc-CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEE
Q 013914 177 ELSAALKINNIDVSMVYPEPWCMPRL-FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIV 255 (434)
Q Consensus 177 e~a~~l~~~g~~v~lv~~~~~~~~~~-~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~v 255 (434)
++...+.+.|.... .....++.|.. -..++.+.+.+.+++.||+++++++|.++.. +++....|.++++.++.+|.|
T Consensus 81 d~~~ff~~~Gv~~~-~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~-~~~~~f~v~~~~~~~~~a~~v 158 (409)
T PF03486_consen 81 DLIAFFEELGVPTK-IEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEK-KEDGVFGVKTKNGGEYEADAV 158 (409)
T ss_dssp HHHHHHHHTT--EE-E-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEE-ETTEEEEEEETTTEEEEESEE
T ss_pred HHHHHHHhcCCeEE-EcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeee-cCCceeEeeccCcccccCCEE
Confidence 44456677776644 34455655532 2356778889999999999999999999987 345556788877789999999
Q ss_pred EEcccCcc
Q 013914 256 VVGVGGRP 263 (434)
Q Consensus 256 i~a~G~~p 263 (434)
|+|+|-..
T Consensus 159 ILAtGG~S 166 (409)
T PF03486_consen 159 ILATGGKS 166 (409)
T ss_dssp EE----SS
T ss_pred EEecCCCC
Confidence 99999543
No 100
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.17 E-value=1.3e-09 Score=102.89 Aligned_cols=59 Identities=20% Similarity=0.313 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcE-EECCEEEEcccCcc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT-LEADIVVVGVGGRP 263 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~-~~~D~vi~a~G~~p 263 (434)
..++...+.+.+.++|++++++++|..|+..++| +..+.+.+|++ ++|+.||.|.|.-.
T Consensus 152 ~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~~ak~Vin~AGl~A 211 (429)
T COG0579 152 PGELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETLEAKFVINAAGLYA 211 (429)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEEEeeEEEECCchhH
Confidence 3456778888888899999999999999985565 56788888876 99999999999654
No 101
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=99.17 E-value=8.7e-10 Score=97.30 Aligned_cols=128 Identities=21% Similarity=0.239 Sum_probs=86.8
Q ss_pred CccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcE--EECCEEEEcccCccChh-----------
Q 013914 200 PRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT--LEADIVVVGVGGRPLIS----------- 266 (434)
Q Consensus 200 ~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~--~~~D~vi~a~G~~p~~~----------- 266 (434)
|..+.-.+.+.+.+.+++.|.-+..+.+|.+.+. .++++..+.+.++.. +.+|..|+|+|.--..-
T Consensus 253 PSllGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EP 331 (421)
T COG3075 253 PSLLGIRLHNQLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEP 331 (421)
T ss_pred cchhhhhHHHHHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcc
Confidence 3334556788889999999999999999999987 678889999988764 56899999999411110
Q ss_pred hhhccc------------------cccCCcEEeCCCCCCC-----CCcEEEecccccccccccCcceecccHHHHHHHHH
Q 013914 267 LFKGQV------------------AENKGGIETDDFFKTS-----ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAE 323 (434)
Q Consensus 267 ~~~~~~------------------~~~~g~i~vd~~~~t~-----~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~ 323 (434)
++...+ ....-++.+|+++|.+ ..|+||+|.+.+.++++....- ...|+..|.
T Consensus 332 If~ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~egcG----sGVaivta~ 407 (421)
T COG3075 332 IFDLDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAEGCG----SGVAIVTAL 407 (421)
T ss_pred hhhcccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHHhcCC----cchHHHHHH
Confidence 010000 0122458889888863 6799999999998876432211 123444566
Q ss_pred HHHHHHhcc
Q 013914 324 QAVKTIMAT 332 (434)
Q Consensus 324 ~aa~~i~~~ 332 (434)
.|++.|+..
T Consensus 408 ~aa~qi~~~ 416 (421)
T COG3075 408 HAAEQIAER 416 (421)
T ss_pred HHHHHHHHH
Confidence 666666654
No 102
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.11 E-value=3.9e-10 Score=110.60 Aligned_cols=54 Identities=26% Similarity=0.378 Sum_probs=40.2
Q ss_pred cCCcEEeCCCCCCCCCcEEEeccccc-ccccccCcceec-ccHHHHHHHHHHHHHHHhc
Q 013914 275 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRRV-EHVDHARKSAEQAVKTIMA 331 (434)
Q Consensus 275 ~~g~i~vd~~~~t~~~~iya~GD~~~-~~~~~~~~~~~~-~~~~~A~~~g~~aa~~i~~ 331 (434)
..|+|.+|.+.||++|++||+|+|+. .. .|..+.. .....+.-.|+.|++++..
T Consensus 309 t~GGi~vd~~~~t~IpGLyAaGE~a~~G~---hG~nrl~gnsl~~~~v~G~~ag~~aa~ 364 (466)
T PRK08401 309 TIGGISVDTFYRTGIKNLYAIGEAASNGF---HGANRLASNSLLECIVSGLEVARTISR 364 (466)
T ss_pred cCCCEEECCCCcccCCCEEECccccccCC---CCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence 57999999999999999999999974 22 2222211 3456677788888888865
No 103
>PRK08275 putative oxidoreductase; Provisional
Probab=99.09 E-value=1.8e-09 Score=108.27 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.+||||||+|.||++||..+++.+. ..+|+|+||...
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~-g~~VilveK~~~ 45 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNP-ALRVLLLEKANV 45 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCC-CCeEEEEeCCCC
Confidence 4899999999999999999998731 223999999875
No 104
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.09 E-value=1.1e-09 Score=109.28 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=32.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.+||||||+|.||++||..+++.|.+ |+|+||...
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae~G~~---VilleK~~~ 50 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARRAGRR---VLVVTKAAL 50 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCe---EEEEEccCC
Confidence 58999999999999999999998876 999999875
No 105
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.09 E-value=1e-09 Score=110.73 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~--g~~~~~V~vie~~~~ 42 (434)
.+||||||+|.||++||..+++. |.+ |+||||...
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~---V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLK---VLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCe---EEEEECCCc
Confidence 47999999999999999999998 776 999999864
No 106
>PLN02463 lycopene beta cyclase
Probab=99.07 E-value=2.2e-08 Score=96.96 Aligned_cols=119 Identities=14% Similarity=0.239 Sum_probs=71.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCc-cCc-cc--c--CCCCCCCCCCcccc--------c
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA-LSK-AY--L--FPEGTARLPGFHVC--------V 70 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~-~~~-~~--~--~~~~~~~~~~~~~~--------~ 70 (434)
.+||+||||||||+++|..|++.|++ |+|+|+.+...+.+.. ... .+ + ........+..... .
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~---V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~ 104 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLS---VCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDL 104 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCe---EEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccc
Confidence 58999999999999999999999987 9999998654332211 000 00 0 00000000000000 0
Q ss_pred CCC----CC----CCChhhHhhcCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCcc
Q 013914 71 GSG----GE----RLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVL 127 (434)
Q Consensus 71 ~~~----~~----~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~ 127 (434)
... .. ..+.+.+.+.|++++. ..|.++..... .|.+.+|.++++|.+|.|+|....
T Consensus 105 ~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~-~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 105 DRPYGRVNRKKLKSKMLERCIANGVQFHQ-AKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred cCcceeEEHHHHHHHHHHHHhhcCCEEEe-eEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 000 00 1111222346899875 48888876554 466778888999999999997654
No 107
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.04 E-value=7e-10 Score=109.52 Aligned_cols=55 Identities=25% Similarity=0.234 Sum_probs=41.1
Q ss_pred cCCcEEeCCCCCCCCCcEEEeccccc-ccccccCccee-cccHHHHHHHHHHHHHHHhcc
Q 013914 275 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 275 ~~g~i~vd~~~~t~~~~iya~GD~~~-~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~ 332 (434)
..|+|.||.+.||++||+||+|+|+. .. .|..+. -..+..+.-.|+.|++++...
T Consensus 332 t~GGi~vd~~~~t~I~GLyAaGE~a~~g~---hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 388 (488)
T TIGR00551 332 TCGGISVDDHGRTTVPGLYAIGEVACTGL---HGANRLASNSLLECLVFGWSAAEDISRR 388 (488)
T ss_pred ecCCEEECCCCcccCCCEEECcccccccc---CcccccchhHHHHHHHHHHHHHHHHHhh
Confidence 56999999999999999999999974 22 222221 135577888899999988753
No 108
>PRK09897 hypothetical protein; Provisional
Probab=99.03 E-value=4.7e-09 Score=103.18 Aligned_cols=167 Identities=18% Similarity=0.178 Sum_probs=92.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC----CCCCccCccccCCCCCCCC----CCcccc--------
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP----YERPALSKAYLFPEGTARL----PGFHVC-------- 69 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~----~~~~~~~~~~~~~~~~~~~----~~~~~~-------- 69 (434)
++|+|||||++|+++|..|.+.+. ..+|+|||++...+ |.....+..++........ +.|...
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~-~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~ 80 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQT-PLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH 80 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCC-CCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence 589999999999999999998653 45699999976432 2221111111111000000 000000
Q ss_pred ---c-------CC-CC--CCCC----hh-------hHhhcC--cEEEcCCeeEEEECCCCE--EEccC-CcEEEcceEEE
Q 013914 70 ---V-------GS-GG--ERLL----PE-------WYKEKG--IELILSTEIVRADIASKT--LLSAT-GLIFKYQILVI 120 (434)
Q Consensus 70 ---~-------~~-~~--~~~~----~~-------~~~~~~--v~~~~~~~v~~i~~~~~~--v~~~~-~~~~~~d~lvl 120 (434)
. .. .. ...+ .+ .+...| +.++..++|+.+...... +.+.+ +..+.+|++|+
T Consensus 81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVL 160 (534)
T PRK09897 81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVI 160 (534)
T ss_pred HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEE
Confidence 0 00 00 0011 11 112334 677777899999876654 34334 46789999999
Q ss_pred ecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhC
Q 013914 121 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN 185 (434)
Q Consensus 121 AtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~ 185 (434)
|||..+..+. ++. ...+ .+..+.. + +....+.+|+|+|.|.++++.+..|...
T Consensus 161 AtGh~~p~~~----~~~--~~yi--~~pw~~~-~---~~~i~~~~V~I~GtGLt~iD~v~~Lt~~ 213 (534)
T PRK09897 161 ATGHVWPDEE----EAT--RTYF--PSPWSGL-M---EAKVDACNVGIMGTSLSGLDAAMAVAIQ 213 (534)
T ss_pred CCCCCCCCCC----hhh--cccc--CCCCcch-h---hcCCCCCeEEEECCCHHHHHHHHHHHhc
Confidence 9997542111 111 1111 1111111 1 1111368999999999999999888755
No 109
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.02 E-value=4.5e-10 Score=112.99 Aligned_cols=106 Identities=22% Similarity=0.237 Sum_probs=78.9
Q ss_pred CCCcEEEECCCH--HHHHHHHHHHhCCCeEEEEccCCccCCcc-------------CCHHHHHHHHHHHHhcCcEEEcCC
Q 013914 162 KNGKAVVVGGGY--IGLELSAALKINNIDVSMVYPEPWCMPRL-------------FTADIAAFYEGYYANKGIKIIKGT 226 (434)
Q Consensus 162 ~~~~v~ViG~g~--~~~e~a~~l~~~g~~v~lv~~~~~~~~~~-------------~~~~~~~~~~~~l~~~GV~~~~~~ 226 (434)
.+.++.|+|+++ ++.+++..+...+.+++++.+.+++++.. ....+...+.+.+++.|++++.++
T Consensus 156 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~~~ 235 (574)
T PRK12842 156 PLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILTGT 235 (574)
T ss_pred CcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEeCC
Confidence 467888999988 89999999999998888776655544321 124577778888899999999999
Q ss_pred eEEEEEecCCCcEEEEEeCC--Cc-EEECC-EEEEcccCcc-Chhhh
Q 013914 227 VAVGFTTNADGEVKEVKLKD--GR-TLEAD-IVVVGVGGRP-LISLF 268 (434)
Q Consensus 227 ~v~~i~~~~~g~v~~v~~~~--g~-~~~~D-~vi~a~G~~p-~~~~~ 268 (434)
.++++.. +++++.++...+ ++ ++.++ .||+|+|.-+ |.+++
T Consensus 236 ~v~~l~~-~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~~ 281 (574)
T PRK12842 236 PARELLT-EGGRVVGARVIDAGGERRITARRGVVLACGGFSHDLARI 281 (574)
T ss_pred EEEEEEe-eCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccchHHHH
Confidence 9999986 367777776643 32 46786 7999999655 44443
No 110
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.01 E-value=1.1e-09 Score=109.69 Aligned_cols=106 Identities=16% Similarity=0.080 Sum_probs=78.6
Q ss_pred CCCcEEEECCCHHHHHHHHH-------HHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec
Q 013914 162 KNGKAVVVGGGYIGLELSAA-------LKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 234 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~-------l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~ 234 (434)
.++.++++|++.++++++.. +.+.+.+|+++...+..... +...+...+.+.+++.|+++++++++.++..
T Consensus 159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~- 236 (557)
T PRK07843 159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLG-MGQALAAGLRIGLQRAGVPVLLNTPLTDLYV- 236 (557)
T ss_pred ccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCccc-CcHHHHHHHHHHHHcCCCEEEeCCEEEEEEE-
Confidence 36678899999999998865 56667777765544333332 5777888889999999999999999999987
Q ss_pred CCCcEEEEEeC-CCc--EEECC-EEEEccc-CccChhhhh
Q 013914 235 ADGEVKEVKLK-DGR--TLEAD-IVVVGVG-GRPLISLFK 269 (434)
Q Consensus 235 ~~g~v~~v~~~-~g~--~~~~D-~vi~a~G-~~p~~~~~~ 269 (434)
+++++.++... +++ .+.++ .||+|+| +.+|.+++.
T Consensus 237 ~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~ 276 (557)
T PRK07843 237 EDGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRA 276 (557)
T ss_pred eCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHH
Confidence 45777776653 443 47785 5888777 777777664
No 111
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.00 E-value=4.9e-09 Score=110.60 Aligned_cols=35 Identities=26% Similarity=0.492 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.+||||||+|.||++||.++++.|.+ |+|+||...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~---V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGAN---VLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCe---EEEEecccc
Confidence 58999999999999999999998887 999999864
No 112
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.99 E-value=2.8e-09 Score=105.50 Aligned_cols=56 Identities=23% Similarity=0.242 Sum_probs=40.9
Q ss_pred cCCcEEeCCCCCCCCCcEEEecccccccccccCcceec-ccHHHHHHHHHHHHHHHhcc
Q 013914 275 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRV-EHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 275 ~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~-~~~~~A~~~g~~aa~~i~~~ 332 (434)
..|+|.||.+.||++|++||+|+|+... ..|..+.. .++..+.-.|+.|++++...
T Consensus 331 ~~GGi~vd~~~~t~I~GLyAaGE~a~~g--~hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 387 (510)
T PRK08071 331 LMGGVKTNLDGETSIPGLYAIGEVACTG--VHGANRLASNSLLEGLVFGKRAAEHILTK 387 (510)
T ss_pred EcCCEEECCCCcccCCCeEEcccccccc--cCCCcccchHHHHHHHHHHHHHHHHHHhh
Confidence 4689999999999999999999997521 12222211 35677778889999988654
No 113
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.97 E-value=4.7e-09 Score=105.22 Aligned_cols=39 Identities=36% Similarity=0.569 Sum_probs=34.2
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
|.+..+||||||+|.||++||..+++.|.+ |+|+||...
T Consensus 1 ~~~~~~DVvVVG~G~AGl~AAl~Aae~G~~---V~lveK~~~ 39 (566)
T PRK06452 1 MEKIEYDAVVIGGGLAGLMSAHEIASAGFK---VAVISKVFP 39 (566)
T ss_pred CCcccCcEEEECccHHHHHHHHHHHHCCCc---EEEEEccCC
Confidence 444568999999999999999999998887 999999854
No 114
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.97 E-value=3e-08 Score=95.59 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
+..+.+.+.+.+++.|++++.+++|.++... ++. ..+.+.+| ++.+|.||+|+|...
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~-~~~-~~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEH-ANG-VVVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEec-CCe-EEEEECCC-EEEeCEEEECCCcch
Confidence 4678888889999999999999999999863 333 35777777 799999999999754
No 115
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.96 E-value=1.3e-08 Score=102.50 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=34.8
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcC---CCCCcEEEEeCCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQG---VKPGELAIISKEAV 42 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g---~~~~~V~vie~~~~ 42 (434)
|+...+||+|||+|.||++||..+++.| .+ |+|+||...
T Consensus 1 ~~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~---V~lleK~~~ 42 (577)
T PRK06069 1 MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLS---VAVVSKTQP 42 (577)
T ss_pred CCceecCEEEECccHHHHHHHHHHHHhCCCCCc---EEEEEcccC
Confidence 6666799999999999999999999987 55 999999864
No 116
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.95 E-value=3.4e-08 Score=98.58 Aligned_cols=55 Identities=22% Similarity=0.244 Sum_probs=41.2
Q ss_pred cCCcEEeCCCCCCCCCcEEEeccccc-ccccccCcceec-ccHHHHHHHHHHHHHHHhcc
Q 013914 275 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRRV-EHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 275 ~~g~i~vd~~~~t~~~~iya~GD~~~-~~~~~~~~~~~~-~~~~~A~~~g~~aa~~i~~~ 332 (434)
..|+|.+|.+.||++|++||+|+|+. .. .|..+.. ..+..+.-.|+.|++++...
T Consensus 352 t~GGi~vd~~~~t~I~GLyAaGE~a~~g~---hGanrl~gnsl~~~~vfG~~Ag~~aa~~ 408 (536)
T PRK09077 352 TCGGVMVDLHGRTDLDGLYAIGEVSYTGL---HGANRMASNSLLECLVYGRSAAEDILSR 408 (536)
T ss_pred ecCCeeECCCCccccCCEEeccccccccc---CCCccchhhhHHHHHHHHHHHHHHHHHh
Confidence 56899999999999999999999974 22 2222211 45667778899999988654
No 117
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.94 E-value=5.4e-09 Score=101.47 Aligned_cols=125 Identities=22% Similarity=0.334 Sum_probs=74.7
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC---ccC----ccccCC---CCC-CCC---CC-
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP---ALS----KAYLFP---EGT-ARL---PG- 65 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~---~~~----~~~~~~---~~~-~~~---~~- 65 (434)
|++.++||+||||||||++||+.|+++|++ |+||||.+......+ .++ ..++.. ..+ ... ..
T Consensus 1 m~~~~~DViIVGaGpAG~~aA~~La~~G~~---V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~ 77 (428)
T PRK10157 1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQ---VLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKL 77 (428)
T ss_pred CCcccCcEEEECcCHHHHHHHHHHHhCCCe---EEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeE
Confidence 666679999999999999999999999997 999999875432111 000 000000 000 000 00
Q ss_pred ----------cccccC---C---CCC--------CCChhhHhhcCcEEEcCCeeEEEECCCCEE--EccCCcEEEcceEE
Q 013914 66 ----------FHVCVG---S---GGE--------RLLPEWYKEKGIELILSTEIVRADIASKTL--LSATGLIFKYQILV 119 (434)
Q Consensus 66 ----------~~~~~~---~---~~~--------~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v--~~~~~~~~~~d~lv 119 (434)
+.+... . ... ..+.+..++.|++++.++.|+.+..+...+ ...++.++.++.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI 157 (428)
T PRK10157 78 AFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVI 157 (428)
T ss_pred EEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEE
Confidence 000000 0 000 011222345799999999999887554432 23456689999999
Q ss_pred EecCCCccc
Q 013914 120 IATGSTVLR 128 (434)
Q Consensus 120 lAtG~~~~~ 128 (434)
.|+|.....
T Consensus 158 ~A~G~~s~l 166 (428)
T PRK10157 158 LADGVNSIL 166 (428)
T ss_pred EEeCCCHHH
Confidence 999976543
No 118
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.93 E-value=4.6e-08 Score=94.22 Aligned_cols=116 Identities=18% Similarity=0.236 Sum_probs=67.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCc-cCcccc-----CCCCCCCCCC-cccc-------cCC
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA-LSKAYL-----FPEGTARLPG-FHVC-------VGS 72 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~-~~~~-------~~~ 72 (434)
||+|||||+||+++|..|++.|++ |+|||+++..+..... .....+ .........+ +... ...
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~---v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLR---VQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGT 77 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCe---EEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCC
Confidence 799999999999999999998887 9999998654322110 000000 0000000011 0000 000
Q ss_pred C--------CCCCChhhHhhcCcEEEcCCeeEEEECC-CC--EEEccCCcEEEcceEEEecCCCc
Q 013914 73 G--------GERLLPEWYKEKGIELILSTEIVRADIA-SK--TLLSATGLIFKYQILVIATGSTV 126 (434)
Q Consensus 73 ~--------~~~~~~~~~~~~~v~~~~~~~v~~i~~~-~~--~v~~~~~~~~~~d~lvlAtG~~~ 126 (434)
. ....+.+.+.+.+++++.+ .+..+..+ .. .+.+.++.+++++.+|.|+|..+
T Consensus 78 ~~~~i~~~~l~~~l~~~~~~~gv~~~~~-~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 78 AYGSVDSTRLHEELLQKCPEGGVLWLER-KAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred ceeEEcHHHHHHHHHHHHHhcCcEEEcc-EEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 0 0011222234568888754 77777655 22 35666777899999999999776
No 119
>PRK10015 oxidoreductase; Provisional
Probab=98.92 E-value=9e-09 Score=99.83 Aligned_cols=124 Identities=18% Similarity=0.275 Sum_probs=74.0
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCc---cCcc---ccCCCC-----CCC-CCC---
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA---LSKA---YLFPEG-----TAR-LPG--- 65 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~---~~~~---~~~~~~-----~~~-~~~--- 65 (434)
|++.++||+||||||||++||+.|++.|++ |+|||+.+......++ ++.. .+.+.. ... ...
T Consensus 1 m~~~~~DViIVGgGpAG~~aA~~LA~~G~~---VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~ 77 (429)
T PRK10015 1 MSDDKFDAIVVGAGVAGSVAALVMARAGLD---VLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKI 77 (429)
T ss_pred CCccccCEEEECcCHHHHHHHHHHHhCCCe---EEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeE
Confidence 666679999999999999999999999987 9999998764322110 0000 000000 000 000
Q ss_pred --------cccccCC--------CCC----CC----ChhhHhhcCcEEEcCCeeEEEECCCCEEE--ccCCcEEEcceEE
Q 013914 66 --------FHVCVGS--------GGE----RL----LPEWYKEKGIELILSTEIVRADIASKTLL--SATGLIFKYQILV 119 (434)
Q Consensus 66 --------~~~~~~~--------~~~----~~----~~~~~~~~~v~~~~~~~v~~i~~~~~~v~--~~~~~~~~~d~lv 119 (434)
....... ... .. +.+..++.|++++.++.|+.+..++..+. ..++.++.++.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI 157 (429)
T PRK10015 78 SFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVI 157 (429)
T ss_pred EEEeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEE
Confidence 0000000 000 01 22233457999999989998876544432 2344579999999
Q ss_pred EecCCCcc
Q 013914 120 IATGSTVL 127 (434)
Q Consensus 120 lAtG~~~~ 127 (434)
+|+|....
T Consensus 158 ~AdG~~s~ 165 (429)
T PRK10015 158 LADGVNSM 165 (429)
T ss_pred EccCcchh
Confidence 99997543
No 120
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.92 E-value=2.2e-08 Score=96.47 Aligned_cols=59 Identities=20% Similarity=0.302 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013914 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 205 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
..+.+.+.+.+++.|++++.+++++++..++++ ..+++++|+++.+|.||.|.|..+..
T Consensus 113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~a~~vV~AdG~~S~v 171 (392)
T PRK08773 113 DLLVDRLWAALHAAGVQLHCPARVVALEQDADR--VRLRLDDGRRLEAALAIAADGAASTL 171 (392)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCe--EEEEECCCCEEEeCEEEEecCCCchH
Confidence 456677778888899999999999999873333 45778888899999999999987754
No 121
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.91 E-value=2.1e-08 Score=95.27 Aligned_cols=58 Identities=24% Similarity=0.371 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
+..+.+.+.+.+++.|++++.+++|+++.. +++.+.+|.+.+|+ +.+|.||+|+|...
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~-~~~~v~gv~~~~g~-i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDV-DGGRVTGVRTSDGE-IRADRVVLAAGAWS 203 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEE-ETTEEEEEEETTEE-EEECEEEE--GGGH
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhh-cccccccccccccc-cccceeEecccccc
Confidence 577888999999999999999999999997 45666679999996 99999999999654
No 122
>PRK06847 hypothetical protein; Provisional
Probab=98.91 E-value=7e-09 Score=99.39 Aligned_cols=124 Identities=20% Similarity=0.280 Sum_probs=75.1
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCc--cC---------ccc----------------
Q 013914 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA--LS---------KAY---------------- 54 (434)
Q Consensus 2 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~--~~---------~~~---------------- 54 (434)
|.+++||+|||||++|+++|..|++.|.+ |+|+|+.+........ +. -++
T Consensus 1 m~~~~~V~IVGaG~aGl~~A~~L~~~g~~---v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~ 77 (375)
T PRK06847 1 MAAVKKVLIVGGGIGGLSAAIALRRAGIA---VDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDL 77 (375)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEE
Confidence 44678999999999999999999999987 9999998642111000 00 000
Q ss_pred cCCCC--CCCCCCcccc---cCC-------CCCCCChhhHhhcCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEE
Q 013914 55 LFPEG--TARLPGFHVC---VGS-------GGERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVI 120 (434)
Q Consensus 55 ~~~~~--~~~~~~~~~~---~~~-------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvl 120 (434)
+.... ....+..... ... .....+.+.+.+.++++..++.+..++.+.. .+.+.++.++.+|.+|.
T Consensus 78 ~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~ 157 (375)
T PRK06847 78 FDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVG 157 (375)
T ss_pred ECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEE
Confidence 00000 0000000000 000 0001122233456899999999999886554 35567788899999999
Q ss_pred ecCCCccc
Q 013914 121 ATGSTVLR 128 (434)
Q Consensus 121 AtG~~~~~ 128 (434)
|+|.....
T Consensus 158 AdG~~s~~ 165 (375)
T PRK06847 158 ADGLYSKV 165 (375)
T ss_pred CcCCCcch
Confidence 99986543
No 123
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.90 E-value=1.7e-08 Score=101.56 Aligned_cols=72 Identities=22% Similarity=0.215 Sum_probs=46.7
Q ss_pred ccCccChhhhhccc--cccCCcEEeCCCCCCCCCcEEEecccccccccccCcceec-ccHHHHHHHHHHHHHHHhcc
Q 013914 259 VGGRPLISLFKGQV--AENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRV-EHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 259 ~G~~p~~~~~~~~~--~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~-~~~~~A~~~g~~aa~~i~~~ 332 (434)
.|..|..+.++... ....|+|.||.++||++|++||+|+|+... ..|..+.. .....|.-.|+.|+++++..
T Consensus 339 ~G~d~~~~~i~v~p~~h~t~GGi~vd~~~~t~i~GLyAaGe~~~~g--~hGanrlggnsl~~a~v~Gr~Ag~~aa~~ 413 (582)
T PRK09231 339 VGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVG--LHGANRLGSNSLAELVVFGRVAGEQAAER 413 (582)
T ss_pred cCCCCCCCeeeeeceeeeeCCCEEECCCCccccCCEEecccccccc--cCCCCCcchhHHHHHHHHHHHHHHHHHHh
Confidence 35555444333221 125799999999999999999999997521 12222211 34566777888888887654
No 124
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.90 E-value=5.8e-09 Score=104.62 Aligned_cols=56 Identities=25% Similarity=0.248 Sum_probs=40.6
Q ss_pred cCCcEEeCCCCCCCCCcEEEecccccccccccCcceec-ccHHHHHHHHHHHHHHHhcc
Q 013914 275 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRV-EHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 275 ~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~-~~~~~A~~~g~~aa~~i~~~ 332 (434)
..|+|.+|.+.||++|++||+|+|+... ..|..+.. .+...+.-.|+.|++++...
T Consensus 356 ~~GGi~~d~~~~t~i~GLyAaGe~a~~G--~hGanrl~g~sl~~~~v~G~~ag~~aa~~ 412 (580)
T TIGR01176 356 TMGGIETDINCETRIKGLFAVGECASVG--LHGANRLGSNSLAELVVFGRRAGEAAAER 412 (580)
T ss_pred cCCCeeECcCcccccCCeEeeecccccC--cCCCccccchhHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999997421 12222211 35667777888888887653
No 125
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.89 E-value=6.4e-09 Score=100.09 Aligned_cols=122 Identities=21% Similarity=0.242 Sum_probs=75.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCc---cCcccc----CCCC---CCCCCCccc------
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA---LSKAYL----FPEG---TARLPGFHV------ 68 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~---~~~~~~----~~~~---~~~~~~~~~------ 68 (434)
+|||+||||||||++||+.|++.|++ |+|+|+.+...+..++ ++...+ .... ...+.....
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~---VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~ 79 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLD---VLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEK 79 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCe---EEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCc
Confidence 69999999999999999999999977 9999998875544333 111111 0000 000000000
Q ss_pred -ccCCC---C----CCC----ChhhHhhcCcEEEcCCeeEEEECCCCEE--Ec-cCCcEEEcceEEEecCCCcccc
Q 013914 69 -CVGSG---G----ERL----LPEWYKEKGIELILSTEIVRADIASKTL--LS-ATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 69 -~~~~~---~----~~~----~~~~~~~~~v~~~~~~~v~~i~~~~~~v--~~-~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.+... . ... +.+..++.|++++.++.+..+..++..+ .. .++.+++++++|.|+|......
T Consensus 80 ~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~ 155 (396)
T COG0644 80 VAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALA 155 (396)
T ss_pred eEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHHH
Confidence 00000 0 011 2233445799999999999888666432 22 2335899999999999765433
No 126
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.89 E-value=2e-08 Score=99.52 Aligned_cols=55 Identities=27% Similarity=0.242 Sum_probs=40.0
Q ss_pred cCCcEEeCCCCCCCCCcEEEeccccc-ccccccCcceec-ccHHHHHHHHHHHHHHHhcc
Q 013914 275 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRRV-EHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 275 ~~g~i~vd~~~~t~~~~iya~GD~~~-~~~~~~~~~~~~-~~~~~A~~~g~~aa~~i~~~ 332 (434)
..|+|.+|.+.||++|++||+|+|+. .. .|..+.. .....+.-.|+.|++++...
T Consensus 340 t~GGi~vd~~~~t~I~GLyAaGE~a~~G~---hGanrl~gnsl~~~~v~G~~ag~~aa~~ 396 (513)
T PRK07512 340 HMGGIAVDADGRSSLPGLWAAGEVASTGL---HGANRLASNSLLEAVVFAARAAEDIAGT 396 (513)
T ss_pred EcCCEEECCCCccccCCEEecccccccCC---CcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 56999999999999999999999973 22 2222111 34566777888888887654
No 127
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.88 E-value=1.1e-08 Score=102.47 Aligned_cols=55 Identities=20% Similarity=0.165 Sum_probs=40.8
Q ss_pred cCCcEEeCCCCCCCCCcEEEecccccccccccCccee-cccHHHHHHHHHHHHHHHhcc
Q 013914 275 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 275 ~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~ 332 (434)
..|+|.+|.+.||++|++||+|+|++... +..+. -.....|.-.|+.|+++++..
T Consensus 347 t~GGi~vd~~~~t~IpGLyAaGE~~gg~h---G~~rlgG~sl~~a~v~Gr~Ag~~aa~~ 402 (543)
T PRK06263 347 FMGGIRINEDCETNIPGLFACGEVAGGVH---GANRLGGNALADTQVFGAIAGKSAAKN 402 (543)
T ss_pred ecCCEEECCCCcccCCCeEeccccccCCC---CCCccchhhhhhhHHHHHHHHHHHHHH
Confidence 56899999999999999999999975432 22111 134567778888888888754
No 128
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.88 E-value=5.1e-09 Score=105.57 Aligned_cols=56 Identities=20% Similarity=0.131 Sum_probs=40.4
Q ss_pred cCCcEEeCCCCC----CCCCcEEEecccccccccccCcceec-ccHHHHHHHHHHHHHHHhcc
Q 013914 275 NKGGIETDDFFK----TSADDVYAVGDVATFPMKLYREMRRV-EHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 275 ~~g~i~vd~~~~----t~~~~iya~GD~~~~~~~~~~~~~~~-~~~~~A~~~g~~aa~~i~~~ 332 (434)
..|+|.||...| |++||+||+|+|+... ..|..+.. .....|.-.|+.|++++...
T Consensus 341 t~GGi~id~~~~v~~~t~I~GLyAaGe~a~~g--~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~ 401 (566)
T TIGR01812 341 SMGGIPTDYTGRVICETIVKGLFAAGECACVS--VHGANRLGGNSLLELVVFGRIAGEAAAEY 401 (566)
T ss_pred cCCCeEECcCcccccCcccCCeeecccccccC--cCcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 579999999999 9999999999998521 12222111 35567778888888887643
No 129
>PRK07190 hypothetical protein; Provisional
Probab=98.88 E-value=6.8e-09 Score=102.14 Aligned_cols=127 Identities=20% Similarity=0.217 Sum_probs=77.8
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-CCCCc-cC---------cccc--------------
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-YERPA-LS---------KAYL-------------- 55 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~-~~~~~-~~---------~~~~-------------- 55 (434)
|.+..+||+||||||+|+++|..|+++|.+ |+|||+.+... ..+.. +. .+++
T Consensus 1 m~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~---V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~ 77 (487)
T PRK07190 1 MSTQVTDVVIIGAGPVGLMCAYLGQLCGLN---TVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSS 77 (487)
T ss_pred CCCccceEEEECCCHHHHHHHHHHHHcCCC---EEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEE
Confidence 666789999999999999999999999987 99999987521 11110 00 0000
Q ss_pred --CCC-CCC-------CCCC--c--ccccCCC-CCCCChhhHhhcCcEEEcCCeeEEEECCCCE--EEccCCcEEEcceE
Q 013914 56 --FPE-GTA-------RLPG--F--HVCVGSG-GERLLPEWYKEKGIELILSTEIVRADIASKT--LLSATGLIFKYQIL 118 (434)
Q Consensus 56 --~~~-~~~-------~~~~--~--~~~~~~~-~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~l 118 (434)
... ... ..+. + ....... ....+.+.+.+.|+++..+++++.+..+... +.+.+++++++++|
T Consensus 78 ~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~v 157 (487)
T PRK07190 78 VWANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYV 157 (487)
T ss_pred EecCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEE
Confidence 000 000 0000 0 0000000 0011223345679999999999999766543 44566778999999
Q ss_pred EEecCCCccccc
Q 013914 119 VIATGSTVLRLT 130 (434)
Q Consensus 119 vlAtG~~~~~~~ 130 (434)
|.|+|.......
T Consensus 158 VgADG~~S~vR~ 169 (487)
T PRK07190 158 IGADGSRSFVRN 169 (487)
T ss_pred EECCCCCHHHHH
Confidence 999998764333
No 130
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.87 E-value=2.7e-09 Score=108.32 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=34.5
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
|-...+||||||+|.||++||..+++.|.+ |+||||...
T Consensus 1 ~~~~~~DVlVIG~G~AGl~AAi~Aae~G~~---VivleK~~~ 39 (657)
T PRK08626 1 MKIIYTDALVIGAGLAGLRVAIAAAQRGLD---TIVLSLVPA 39 (657)
T ss_pred CCceeccEEEECccHHHHHHHHHHHHcCCC---EEEEeCCCC
Confidence 445579999999999999999999999987 999998754
No 131
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.86 E-value=4.1e-08 Score=90.96 Aligned_cols=99 Identities=16% Similarity=0.209 Sum_probs=80.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc---c--------CCc----cCCHHHHHHHHHHHHhcCcEEEcCCeEE
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW---C--------MPR----LFTADIAAFYEGYYANKGIKIIKGTVAV 229 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~---~--------~~~----~~~~~~~~~~~~~l~~~GV~~~~~~~v~ 229 (434)
+++|||+|+.|+++|..|.+.|.+|+++++.+. + .+. ..+.++...+.+.+++.|+++++ .+|.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~ 80 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI 80 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence 589999999999999999999999999997641 1 121 12367888899999999999998 7899
Q ss_pred EEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013914 230 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 230 ~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~ 266 (434)
+++.. +....+.+.+++++.+|.+|+|+|.+|+..
T Consensus 81 ~v~~~--~~~~~v~~~~~~~~~~d~liiAtG~~~~~~ 115 (300)
T TIGR01292 81 KVDLS--DRPFKVKTGDGKEYTAKAVIIATGASARKL 115 (300)
T ss_pred EEEec--CCeeEEEeCCCCEEEeCEEEECCCCCcccC
Confidence 98873 333467777888999999999999987654
No 132
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.85 E-value=1e-08 Score=102.33 Aligned_cols=54 Identities=26% Similarity=0.199 Sum_probs=38.4
Q ss_pred cCCcEEeCCCCCCCCCcEEEecccccccccccCcceec-ccHHHHHHHHHHHHHHHh
Q 013914 275 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRV-EHVDHARKSAEQAVKTIM 330 (434)
Q Consensus 275 ~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~-~~~~~A~~~g~~aa~~i~ 330 (434)
..|+|.+|.+.||++|++||+|+|+..- ..|..+.. .+...+.-.|+.+++.+.
T Consensus 346 ~~GGi~vd~~~~t~I~GLyAaGE~a~~G--~hGanRL~gnsl~e~lvfG~~a~~~~~ 400 (553)
T PRK07395 346 WMGGVVTDLNNQTSIPGLYAVGETASTG--VHGANRLASNSLLECLVFAAQLAQLEL 400 (553)
T ss_pred cCCCeeECCCCcccCCCEEECccccccC--CCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999997421 12222211 344566677888888774
No 133
>PLN02815 L-aspartate oxidase
Probab=98.85 E-value=2.6e-08 Score=99.83 Aligned_cols=55 Identities=27% Similarity=0.238 Sum_probs=40.3
Q ss_pred cCCcEEeCCCCCCCCCcEEEecccccccccccCcceec-ccHHHHHHHHHHHHHHHhc
Q 013914 275 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRV-EHVDHARKSAEQAVKTIMA 331 (434)
Q Consensus 275 ~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~-~~~~~A~~~g~~aa~~i~~ 331 (434)
..|+|.+|.+.||++||+||+|+|+... ..|..+.. .++..+.-.|+.|++++..
T Consensus 376 t~GGi~vD~~~~t~IpGLyAaGE~a~~G--~hGanrl~gnsl~e~lvfGr~Ag~~aa~ 431 (594)
T PLN02815 376 MCGGVRTGLQGETNVQGLYAAGEVACTG--LHGANRLASNSLLEALVFARRAVQPSID 431 (594)
T ss_pred eCCCeeECCCCceecCCEEecccccccC--CCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999998421 12222211 3567777788888888764
No 134
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.83 E-value=2.3e-08 Score=100.25 Aligned_cols=33 Identities=33% Similarity=0.580 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHH----HcCCCCCcEEEEeCCCC
Q 013914 7 KYVILGGGVSAGYAAREFA----KQGVKPGELAIISKEAV 42 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~----~~g~~~~~V~vie~~~~ 42 (434)
||||||+|.|||+||..++ +.|.+ |+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~---VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLK---IVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCe---EEEEEccCC
Confidence 7999999999999999998 56776 999999864
No 135
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.83 E-value=2.6e-08 Score=100.33 Aligned_cols=104 Identities=16% Similarity=0.131 Sum_probs=69.1
Q ss_pred CCcEEEECCCHHH-HHHHHHHHhCCCeEEEEccCCccCCc-------------cCCHHHHHHHHHHHHhcCcEEEcCCeE
Q 013914 163 NGKAVVVGGGYIG-LELSAALKINNIDVSMVYPEPWCMPR-------------LFTADIAAFYEGYYANKGIKIIKGTVA 228 (434)
Q Consensus 163 ~~~v~ViG~g~~~-~e~a~~l~~~g~~v~lv~~~~~~~~~-------------~~~~~~~~~~~~~l~~~GV~~~~~~~v 228 (434)
..++.++|++.++ .+++..+...+..+.+..+..+++.. ..+..+.+.+.+.+++.|++++.++++
T Consensus 161 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v 240 (581)
T PRK06134 161 LRETSFMGMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLLKSAEDLGVRIWESAPA 240 (581)
T ss_pred cccccccccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHhCCCEEEcCCEE
Confidence 4566678877665 67777766666555443332221110 124567788888899999999999999
Q ss_pred EEEEecCCCcEEEEEeC--CCc-EEEC-CEEEEcccC-ccChhh
Q 013914 229 VGFTTNADGEVKEVKLK--DGR-TLEA-DIVVVGVGG-RPLISL 267 (434)
Q Consensus 229 ~~i~~~~~g~v~~v~~~--~g~-~~~~-D~vi~a~G~-~p~~~~ 267 (434)
+++.. +++++.+|... ++. ++.+ +.||+|+|- ..|.++
T Consensus 241 ~~l~~-~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~ 283 (581)
T PRK06134 241 RELLR-EDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPHDPAR 283 (581)
T ss_pred EEEEE-eCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcccCHHH
Confidence 99876 36777666553 332 5788 999999984 444444
No 136
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.83 E-value=2.8e-07 Score=82.63 Aligned_cols=175 Identities=17% Similarity=0.131 Sum_probs=110.5
Q ss_pred HHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc---------------------------------
Q 013914 155 VEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------------------------------- 201 (434)
Q Consensus 155 ~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~--------------------------------- 201 (434)
.+.+.+.....|+|||+|+.|+-+|..+++.|.+|.++++.+.+...
T Consensus 17 ~~~~~~~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~ 96 (257)
T PRK04176 17 FEKLLDYLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVED 96 (257)
T ss_pred HHHHHHhccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecC
Confidence 34444445578999999999999999999999999999987543210
Q ss_pred ----cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-----------CCcEEECCEEEEcccCccChh
Q 013914 202 ----LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-----------DGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 202 ----~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~-----------~g~~~~~D~vi~a~G~~p~~~ 266 (434)
.-..++...+.+..++.|++++.++.+.++...+++++.++... +..++.++.||.|+|......
T Consensus 97 g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~ 176 (257)
T PRK04176 97 GLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVV 176 (257)
T ss_pred cceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHH
Confidence 01224556677777889999999999999876445566666543 124789999999999544322
Q ss_pred -hh-hc----cccc-cCC--------cEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhc
Q 013914 267 -LF-KG----QVAE-NKG--------GIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 331 (434)
Q Consensus 267 -~~-~~----~~~~-~~g--------~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 331 (434)
.+ +. .... ... ...|+.+-+. +|++|++|=++.-.. |.++--+....=...|+.||+-++.
T Consensus 177 ~~l~~~~~~~~~~~~g~~~~~~~~~e~~v~~~t~~~-~~g~~~~gm~~~~~~---~~~rmg~~fg~m~~sg~~~a~~~~~ 252 (257)
T PRK04176 177 SVLARKGPELGIEVPGEKSMWAERGEKLVVENTGEV-YPGLYVAGMAANAVH---GLPRMGPIFGGMLLSGKKVAELILE 252 (257)
T ss_pred HHHHHHcCCcccccCCccccccCchHHHHHhcCCeE-cCCEEEeehhhhhhc---CCCccCchhHhHHHhHHHHHHHHHH
Confidence 22 11 0111 011 1222333333 899999997665322 1111112222233578888888876
Q ss_pred cC
Q 013914 332 TE 333 (434)
Q Consensus 332 ~~ 333 (434)
.+
T Consensus 253 ~~ 254 (257)
T PRK04176 253 KL 254 (257)
T ss_pred Hh
Confidence 54
No 137
>PRK06834 hypothetical protein; Provisional
Probab=98.83 E-value=2.3e-08 Score=98.55 Aligned_cols=125 Identities=26% Similarity=0.362 Sum_probs=76.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC--CC-ccCc-------------cccCCCCCCCCCCcc
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE--RP-ALSK-------------AYLFPEGTARLPGFH 67 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~--~~-~~~~-------------~~~~~~~~~~~~~~~ 67 (434)
..+||+||||||+|+++|..|++.|.+ |+|||+.+..... +. .++. .+...........+.
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~---v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~ 78 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVD---VAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFA 78 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceee
Confidence 468999999999999999999999987 9999998643211 11 1100 000000000000000
Q ss_pred ---cccC---C------C-----CCCCChhhHhhcCcEEEcCCeeEEEECCCCE--EEccCCcEEEcceEEEecCCCccc
Q 013914 68 ---VCVG---S------G-----GERLLPEWYKEKGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTVLR 128 (434)
Q Consensus 68 ---~~~~---~------~-----~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lvlAtG~~~~~ 128 (434)
.... . . ....+.+.+++.+++++.+++++.+..+... +.+.++.++++|++|.|.|.....
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 79 ATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred eEecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCc
Confidence 0000 0 0 0011223345568999999999999876654 445567789999999999987655
Q ss_pred ccC
Q 013914 129 LTD 131 (434)
Q Consensus 129 ~~~ 131 (434)
...
T Consensus 159 R~~ 161 (488)
T PRK06834 159 RKA 161 (488)
T ss_pred Hhh
Confidence 443
No 138
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.82 E-value=3.6e-08 Score=98.25 Aligned_cols=57 Identities=23% Similarity=0.283 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 205 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
..+.+.+.+.+++.|+++++++.|.+|.. +++++..|++.+|+++.+|.||++++..
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~-~~~~~~~V~~~~g~~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIET-EGGRATAVHLADGERLDADAVVSNADLH 275 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEe-eCCEEEEEEECCCCEEECCEEEECCcHH
Confidence 56788888999999999999999999987 3566678899999899999999998853
No 139
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.80 E-value=7.3e-08 Score=94.99 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
-..+.+.+.+.+++.|++|+++++|++|.. ++|+..++...+|..+++|.||.+...
T Consensus 223 ~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v-~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 223 MGALVDALAELAREHGGEIRTGAEVSQILV-EGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCceEEEEE-eCCcceEEeccccceeccceeEecCch
Confidence 356889999999999999999999999998 455566788888878899999998775
No 140
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.80 E-value=9.3e-09 Score=101.58 Aligned_cols=39 Identities=38% Similarity=0.539 Sum_probs=35.4
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
|+..++||||||||.|||.||..+++.|.+ |+|+||...
T Consensus 2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~---V~l~~K~~~ 40 (562)
T COG1053 2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLK---VALLSKAPP 40 (562)
T ss_pred cccccCCEEEECCcHHHHHHHHHHHhcCCc---EEEEEcccc
Confidence 556689999999999999999999999987 999999865
No 141
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.79 E-value=2.3e-08 Score=92.44 Aligned_cols=119 Identities=24% Similarity=0.408 Sum_probs=70.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC--ccCccc--------------------cCCCC-CCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP--ALSKAY--------------------LFPEG-TAR 62 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~--~~~~~~--------------------~~~~~-~~~ 62 (434)
+||+|||||++|+++|..|++.|.+ |+|+|+........+ .+.... ..... ...
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~---v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLR---VLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVE 77 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEE
Confidence 6999999999999999999999987 999999975322100 000000 00000 000
Q ss_pred CC---CcccccCC-CCCCCChhhHhhcCcEEEcCCeeEEEECCCCE--EEcc-CCcEEEcceEEEecCCCcc
Q 013914 63 LP---GFHVCVGS-GGERLLPEWYKEKGIELILSTEIVRADIASKT--LLSA-TGLIFKYQILVIATGSTVL 127 (434)
Q Consensus 63 ~~---~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~-~~~~~~~d~lvlAtG~~~~ 127 (434)
.+ .....+.. .....+.+.+.+.|++++.++++..+..+.+. +.+. ++.++++|++|.|+|....
T Consensus 78 ~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~ 149 (295)
T TIGR02032 78 IPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSI 149 (295)
T ss_pred eccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcchH
Confidence 00 00000000 00112233344578999999899887665553 3333 3457999999999997643
No 142
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.79 E-value=2.4e-08 Score=89.55 Aligned_cols=117 Identities=19% Similarity=0.181 Sum_probs=68.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCC-----------CCCC------Ccc
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT-----------ARLP------GFH 67 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~-----------~~~~------~~~ 67 (434)
.+||+||||||||++||++|++.|++ |+|+|+....... ....+.+.+... ..++ ++.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~---V~liEk~~~~Ggg--~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~ 99 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLK---VAVFERKLSFGGG--MWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLY 99 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCe---EEEEecCCCCCCc--cccCccccccccchHHHHHHHHHCCCCceeecCcce
Confidence 58999999999999999999999987 9999998653211 000111111000 0000 000
Q ss_pred cccCCCCCCCChhhHhhcCcEEEcCCeeEEEECCCC-EEE---cc-----------CCcEEEcceEEEecCCCc
Q 013914 68 VCVGSGGERLLPEWYKEKGIELILSTEIVRADIASK-TLL---SA-----------TGLIFKYQILVIATGSTV 126 (434)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~-~v~---~~-----------~~~~~~~d~lvlAtG~~~ 126 (434)
..........+.+...+.|++++.++.+..+..++. .+. .. +..++.++.+|+|||...
T Consensus 100 ~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 100 VADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred eccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 000000001122334557999999988888765333 221 11 224689999999999643
No 143
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.78 E-value=4e-07 Score=87.90 Aligned_cols=61 Identities=16% Similarity=0.159 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~ 264 (434)
..++.+.+.+.++..|.+++++++|++|..++++++.+|++++|+++.|+.||......|.
T Consensus 231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~ 291 (443)
T PTZ00363 231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD 291 (443)
T ss_pred HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence 4578888889999999999999999999875567888899999999999999998887665
No 144
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.78 E-value=3.1e-07 Score=89.35 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
+..+...+.+.+++.|++++.+++|++++.+ ++.+..+++.++ ++.+|.||+|+|...
T Consensus 200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~~-~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGGG-VITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence 3466777888889999999999999999863 444556776655 799999999999643
No 145
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.77 E-value=4.8e-08 Score=87.31 Aligned_cols=116 Identities=18% Similarity=0.162 Sum_probs=68.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCC------C-----CCCCC------cc
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEG------T-----ARLPG------FH 67 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~------~-----~~~~~------~~ 67 (434)
.+||+|||||+||++||+.|+++|++ |+|+||+...+.. ....+.+.+.. . ..++. +.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~---V~vlEk~~~~Ggg--~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~ 95 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLK---VCVLERSLAFGGG--SWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYV 95 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCcc--ccCCCcceecccccchHHHHHHHCCCCeeeccCceE
Confidence 68999999999999999999999987 9999999764311 00001000000 0 00000 00
Q ss_pred cccCCCCCCCChhhHhhcCcEEEcCCeeEEEECCCC--E---EEcc-----------CCcEEEcceEEEecCCC
Q 013914 68 VCVGSGGERLLPEWYKEKGIELILSTEIVRADIASK--T---LLSA-----------TGLIFKYQILVIATGST 125 (434)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~---v~~~-----------~~~~~~~d~lvlAtG~~ 125 (434)
..........+.+...+.|++++.++.+..+..++. . +.+. +..+++++.+|.|||..
T Consensus 96 ~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 96 VADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD 169 (254)
T ss_pred EeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence 000000011122234457999999999988775443 2 2221 12468999999999954
No 146
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.75 E-value=9.1e-07 Score=79.13 Aligned_cols=172 Identities=16% Similarity=0.143 Sum_probs=108.5
Q ss_pred HHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc----------------------------------
Q 013914 157 AIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL---------------------------------- 202 (434)
Q Consensus 157 ~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~---------------------------------- 202 (434)
.+.+...-.++|||+|+.|+-+|..+++.|.+|.++++.+.+....
T Consensus 15 ~~~~~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~ 94 (254)
T TIGR00292 15 DLLDYAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGY 94 (254)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCce
Confidence 3333346689999999999999999999999999999875431000
Q ss_pred ---CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCC-cEEEEEeCC-----------CcEEECCEEEEcccCcc-Chh
Q 013914 203 ---FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG-EVKEVKLKD-----------GRTLEADIVVVGVGGRP-LIS 266 (434)
Q Consensus 203 ---~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g-~v~~v~~~~-----------g~~~~~D~vi~a~G~~p-~~~ 266 (434)
...++.+.+.+.+.+.|++++.++.+.++...+++ ++.++.+.. ..+++++.||.|+|... ...
T Consensus 95 ~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~ 174 (254)
T TIGR00292 95 VVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVA 174 (254)
T ss_pred EEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHH
Confidence 11244566667778899999999999998764332 567776542 24789999999999644 333
Q ss_pred hhhc--cccc-c-----CCcEE--------eCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHh
Q 013914 267 LFKG--QVAE-N-----KGGIE--------TDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM 330 (434)
Q Consensus 267 ~~~~--~~~~-~-----~g~i~--------vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 330 (434)
++.. .+.. . .+... |+.+-+ -+|++|++|=.+.-.. |.++=-+....=...|+.||+-++
T Consensus 175 ~l~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~-~~~g~~~~gm~~~~~~---~~~rmgp~fg~m~~sg~~~a~~~~ 250 (254)
T TIGR00292 175 VCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHENTRE-VVPNLYVAGMAVAAVH---GLPRMGPIFGGMLLSGKHVAEQIL 250 (254)
T ss_pred HHHHHcCcccCCcccCCchhhhhhhhHHHHHhccCc-ccCCEEEechhhhhhc---CCCCcCchHHHHHHhhHHHHHHHH
Confidence 3321 1111 0 11111 112222 3899999997665321 111111222223357888888876
Q ss_pred cc
Q 013914 331 AT 332 (434)
Q Consensus 331 ~~ 332 (434)
..
T Consensus 251 ~~ 252 (254)
T TIGR00292 251 EK 252 (254)
T ss_pred HH
Confidence 54
No 147
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.75 E-value=3.1e-07 Score=89.83 Aligned_cols=89 Identities=15% Similarity=0.135 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEccCCcc--CCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec-CC--CcEEEEEeC-C
Q 013914 173 YIGLELSAALKINNIDVSMVYPEPWC--MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN-AD--GEVKEVKLK-D 246 (434)
Q Consensus 173 ~~~~e~a~~l~~~g~~v~lv~~~~~~--~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~-~~--g~v~~v~~~-~ 246 (434)
.++.|+...+.++=.++.-+.....+ ....-.+.+...+.+.++++||+|+++++|+++..+ ++ +++.++... +
T Consensus 192 hSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~ 271 (576)
T PRK13977 192 HSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRN 271 (576)
T ss_pred hHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeC
Confidence 57888888887652111111111111 111123678899999999999999999999999874 23 567788774 3
Q ss_pred Cc-----EEECCEEEEcccC
Q 013914 247 GR-----TLEADIVVVGVGG 261 (434)
Q Consensus 247 g~-----~~~~D~vi~a~G~ 261 (434)
|+ ..+.|.||+++|.
T Consensus 272 ~~~~~I~l~~~DlVivTnGs 291 (576)
T PRK13977 272 GKEETIDLTEDDLVFVTNGS 291 (576)
T ss_pred CceeEEEecCCCEEEEeCCc
Confidence 32 2458999999995
No 148
>PRK06184 hypothetical protein; Provisional
Probab=98.75 E-value=4.1e-08 Score=97.71 Aligned_cols=123 Identities=22% Similarity=0.238 Sum_probs=72.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC-CCC-cc-------------Cc-----c-------ccC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY-ERP-AL-------------SK-----A-------YLF 56 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~-~~~-~~-------------~~-----~-------~~~ 56 (434)
+++||+||||||+|+++|..|+++|.+ |+|||+.+.... .+. .+ .. + ++.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~---v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~ 78 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVS---FRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYR 78 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEe
Confidence 468999999999999999999999998 999999864211 000 00 00 0 000
Q ss_pred CCC-CCC--CC---------Cccc--ccCC-CCCCCChhhHhhcCcEEEcCCeeEEEECCCCE--EEc---cCCcEEEcc
Q 013914 57 PEG-TAR--LP---------GFHV--CVGS-GGERLLPEWYKEKGIELILSTEIVRADIASKT--LLS---ATGLIFKYQ 116 (434)
Q Consensus 57 ~~~-~~~--~~---------~~~~--~~~~-~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~---~~~~~~~~d 116 (434)
... ... +. .+.. .... .....+.+.+.+.++++..++++++++.+... +.+ .+++++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~ 158 (502)
T PRK06184 79 DDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRAR 158 (502)
T ss_pred CCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeC
Confidence 000 000 00 0000 0000 00011223344568999999999999866554 333 455689999
Q ss_pred eEEEecCCCcccc
Q 013914 117 ILVIATGSTVLRL 129 (434)
Q Consensus 117 ~lvlAtG~~~~~~ 129 (434)
+||.|+|......
T Consensus 159 ~vVgADG~~S~vR 171 (502)
T PRK06184 159 YLVGADGGRSFVR 171 (502)
T ss_pred EEEECCCCchHHH
Confidence 9999999875433
No 149
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.74 E-value=3e-07 Score=90.70 Aligned_cols=65 Identities=14% Similarity=0.161 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC--CC--cEEECCEEEEccc-CccChhhhh
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DG--RTLEADIVVVGVG-GRPLISLFK 269 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~--~g--~~~~~D~vi~a~G-~~p~~~~~~ 269 (434)
...+...+.+.+++.|++++.+++++++.. +++++.++... ++ ..+.++.||+|+| +..|.+++.
T Consensus 130 g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~-~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~~~~ 199 (466)
T PRK08274 130 GKALVNALYRSAERLGVEIRYDAPVTALEL-DDGRFVGARAGSAAGGAERIRAKAVVLAAGGFESNREWLR 199 (466)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEe-cCCeEEEEEEEccCCceEEEECCEEEECCCCCCCCHHHHH
Confidence 356777888888999999999999999987 46777777653 33 3678999999998 455555543
No 150
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.74 E-value=2.9e-07 Score=89.27 Aligned_cols=56 Identities=27% Similarity=0.296 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-----cEEECCEEEEcccCc
Q 013914 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-----RTLEADIVVVGVGGR 262 (434)
Q Consensus 205 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g-----~~~~~D~vi~a~G~~ 262 (434)
..+...+.+.+++.|++++.+++|.+++.+ ++.+ .+.+.++ .++.+|.||+|+|..
T Consensus 197 ~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~-~~~~-~v~~~~~~~~~~~~i~a~~vV~a~G~~ 257 (410)
T PRK12409 197 HKFTTGLAAACARLGVQFRYGQEVTSIKTD-GGGV-VLTVQPSAEHPSRTLEFDGVVVCAGVG 257 (410)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEE-EEEEEcCCCCccceEecCEEEECCCcC
Confidence 456677788889999999999999999863 3333 3433322 378999999999954
No 151
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.73 E-value=4.6e-08 Score=94.21 Aligned_cols=39 Identities=26% Similarity=0.445 Sum_probs=36.1
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
|||+.+||+|||||++|+++|..|++.|.+ |+|||+.+.
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~---v~liE~~~~ 41 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGAS---VALVAPEPP 41 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCe---EEEEeCCCC
Confidence 777889999999999999999999999987 999999864
No 152
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.73 E-value=2.7e-08 Score=97.19 Aligned_cols=99 Identities=20% Similarity=0.340 Sum_probs=73.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+|+|||||++|+.+|..|++.|.+ |+++++.+... +... +.+ .....+.+++
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~l------------~~~~---~~~--------~~~~~~~l~~ 210 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSK---VTVLDAASTIL------------PREE---PSV--------AALAKQYMEE 210 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCccC------------CCCC---HHH--------HHHHHHHHHH
Confidence 46899999999999999999998876 99999985421 0000 000 1233456778
Q ss_pred cCcEEEcCCeeEEEECCCCEEE-ccCCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKTLL-SATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~-~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.+++.+...+. ..++.++.+|.+++|+|.+|+..
T Consensus 211 ~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~ 256 (438)
T PRK07251 211 DGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTE 256 (438)
T ss_pred cCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCcc
Confidence 8999999999999987655443 34566899999999999998754
No 153
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.72 E-value=1.1e-06 Score=85.24 Aligned_cols=57 Identities=28% Similarity=0.364 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
+..+...+.+.+++.|++++.+++|+++...+++.+..+++.+| ++.++.||+|+|-
T Consensus 182 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg 238 (407)
T TIGR01373 182 HDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAG 238 (407)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCCh
Confidence 34556667788899999999999999997644566667888888 6999998888773
No 154
>PRK09126 hypothetical protein; Provisional
Probab=98.71 E-value=4.4e-08 Score=94.46 Aligned_cols=125 Identities=21% Similarity=0.260 Sum_probs=74.2
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC-----CCC--ccC---------ccccC---CCCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY-----ERP--ALS---------KAYLF---PEGTA 61 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~-----~~~--~~~---------~~~~~---~~~~~ 61 (434)
|| ++||+|||||++|+++|..|+++|++ |+|+|+.+.... ... .++ -+++. .....
T Consensus 1 ~~--~~dviIvGgG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~ 75 (392)
T PRK09126 1 MM--HSDIVVVGAGPAGLSFARSLAGSGLK---VTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEIS 75 (392)
T ss_pred CC--cccEEEECcCHHHHHHHHHHHhCCCc---EEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCC
Confidence 55 68999999999999999999999997 999999864211 000 000 00000 00000
Q ss_pred CCCCc---------ccccC-----CCCC------CCC----hhh-HhhcCcEEEcCCeeEEEECCCC--EEEccCCcEEE
Q 013914 62 RLPGF---------HVCVG-----SGGE------RLL----PEW-YKEKGIELILSTEIVRADIASK--TLLSATGLIFK 114 (434)
Q Consensus 62 ~~~~~---------~~~~~-----~~~~------~~~----~~~-~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~ 114 (434)
..... ..... .... ... .+. .+..|++++.++.++.+..+.. .+.+.++.++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ 155 (392)
T PRK09126 76 PLRDAKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLT 155 (392)
T ss_pred ccceEEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEE
Confidence 00000 00000 0000 000 111 1235899999999998876554 35566788899
Q ss_pred cceEEEecCCCccccc
Q 013914 115 YQILVIATGSTVLRLT 130 (434)
Q Consensus 115 ~d~lvlAtG~~~~~~~ 130 (434)
+|.+|.|.|.......
T Consensus 156 a~~vI~AdG~~S~vr~ 171 (392)
T PRK09126 156 ARLLVAADSRFSATRR 171 (392)
T ss_pred eCEEEEeCCCCchhhH
Confidence 9999999998665444
No 155
>PLN02612 phytoene desaturase
Probab=98.71 E-value=3.7e-07 Score=91.60 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEccc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 260 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G 260 (434)
+..+.+.+.+.+++.|++++++++|++|..++++.+..+.+.+|+++++|.||+|++
T Consensus 307 ~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p 363 (567)
T PLN02612 307 PERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATP 363 (567)
T ss_pred hHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCC
Confidence 356778888888889999999999999988667777778888998999999999987
No 156
>PRK07045 putative monooxygenase; Reviewed
Probab=98.71 E-value=4.5e-08 Score=94.20 Aligned_cols=124 Identities=19% Similarity=0.217 Sum_probs=74.2
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC-CC-ccCc---------cccCC---CCCCCCCCc
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE-RP-ALSK---------AYLFP---EGTARLPGF 66 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~-~~-~~~~---------~~~~~---~~~~~~~~~ 66 (434)
|++.++||+||||||+|+++|..|++.|++ |+|+|+.+..... +. .++. +++.. ........+
T Consensus 1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~ 77 (388)
T PRK07045 1 MKNNPVDVLINGSGIAGVALAHLLGARGHS---VTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAM 77 (388)
T ss_pred CCCceeEEEEECCcHHHHHHHHHHHhcCCc---EEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccce
Confidence 677789999999999999999999999997 9999998753210 00 0000 00000 000000000
Q ss_pred c----------cccCC---CCC------CCChhh----Hh-hcCcEEEcCCeeEEEECCCC----EEEccCCcEEEcceE
Q 013914 67 H----------VCVGS---GGE------RLLPEW----YK-EKGIELILSTEIVRADIASK----TLLSATGLIFKYQIL 118 (434)
Q Consensus 67 ~----------~~~~~---~~~------~~~~~~----~~-~~~v~~~~~~~v~~i~~~~~----~v~~~~~~~~~~d~l 118 (434)
. ..... ... ..+.+. +. ..++++..+++++.+..+.. .+...+++++.+|.+
T Consensus 78 ~~~~~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~v 157 (388)
T PRK07045 78 RLYHDKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVL 157 (388)
T ss_pred EEecCCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEE
Confidence 0 00000 000 001111 11 24789999999998876432 366678888999999
Q ss_pred EEecCCCcc
Q 013914 119 VIATGSTVL 127 (434)
Q Consensus 119 vlAtG~~~~ 127 (434)
|.|.|....
T Consensus 158 IgADG~~S~ 166 (388)
T PRK07045 158 VGADGARSM 166 (388)
T ss_pred EECCCCChH
Confidence 999997653
No 157
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.71 E-value=2.8e-07 Score=90.28 Aligned_cols=57 Identities=18% Similarity=0.257 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHh----cC--cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 204 TADIAAFYEGYYAN----KG--IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~----~G--V~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
+..+.+.+.+.+++ .| ++++++++|++++.. ++....|.+.+| ++.+|.||+|+|.-
T Consensus 210 ~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~-~~~~~~V~T~~G-~i~A~~VVvaAG~~ 272 (497)
T PTZ00383 210 YQKLSESFVKHARRDALVPGKKISINLNTEVLNIERS-NDSLYKIHTNRG-EIRARFVVVSACGY 272 (497)
T ss_pred HHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec-CCCeEEEEECCC-EEEeCEEEECcChh
Confidence 34677788888888 77 889999999999873 344567888888 79999999999953
No 158
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.71 E-value=7e-07 Score=85.77 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
+..+.+.+.+.+++.|++++.+++|.++..+ ++. ..+.+.++ ++.+|.||+|+|..
T Consensus 144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~-~~v~~~~~-~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 144 AEKALRALQELAEAHGATVRDGTKVVEIEPT-ELL-VTVKTTKG-SYQANKLVVTAGAW 199 (380)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCe-EEEEeCCC-EEEeCEEEEecCcc
Confidence 4566778888889999999999999999873 333 35777666 79999999999953
No 159
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.71 E-value=1.9e-07 Score=94.18 Aligned_cols=54 Identities=17% Similarity=0.067 Sum_probs=39.3
Q ss_pred cCCcEEeCCCCCCCCCcEEEecccccccccccCcceec-ccHHHHHHHHHHHHHHHhc
Q 013914 275 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRV-EHVDHARKSAEQAVKTIMA 331 (434)
Q Consensus 275 ~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~-~~~~~A~~~g~~aa~~i~~ 331 (434)
..|+|.+|.+.+|++|++||+|+|++.. .|..+.. .+...+.-.|+.|+++++.
T Consensus 369 ~~gG~~~d~~~~t~i~gL~a~Ge~~~~~---hg~nrl~~~sl~~~~v~g~~Ag~~aa~ 423 (603)
T TIGR01811 369 TMGGLWVDYDQMTNIPGLFAAGECDFSQ---HGANRLGANSLLSAIADGYFALPFTIP 423 (603)
T ss_pred eCCCeeECCCCcccCCCEEECcccccCc---CCCccchhHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999999997532 2322211 3456677778888877654
No 160
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.70 E-value=6e-07 Score=86.71 Aligned_cols=59 Identities=20% Similarity=0.231 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013914 205 ADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 205 ~~~~~~~~~~l~~~-GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
.++.+.+.+.+.+. +++++.+++++++..++++ ..+.+.+|+++.+|.||.|.|.....
T Consensus 109 ~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 109 ADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG--VTVFDQQGNRWTGDALIGCDGVKSVV 168 (396)
T ss_pred HHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc--eEEEEcCCCEEecCEEEECCCcChHH
Confidence 34556666666665 4999999999999863333 45778889899999999999976544
No 161
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.70 E-value=4.3e-07 Score=84.41 Aligned_cols=85 Identities=20% Similarity=0.166 Sum_probs=65.4
Q ss_pred HHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 182 LKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 182 l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
+...|....++....+.+....-+.+.+.+.+.+++.|++++++++|..++. +++.+..+.+++|.++++|.||+|+|+
T Consensus 150 ~~aa~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~-~~~~~~~v~~~~g~~i~~~~vvlA~Gr 228 (486)
T COG2509 150 FRAAGAGEEILPIYQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEI-EDNEVLGVKLTKGEEIEADYVVLAPGR 228 (486)
T ss_pred HHHhCCCceeeeccccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEe-cCCceEEEEccCCcEEecCEEEEccCc
Confidence 4444555555543333333334578889999999999999999999999987 455577899999999999999999998
Q ss_pred ccChhh
Q 013914 262 RPLISL 267 (434)
Q Consensus 262 ~p~~~~ 267 (434)
+....+
T Consensus 229 sg~dw~ 234 (486)
T COG2509 229 SGRDWF 234 (486)
T ss_pred chHHHH
Confidence 876653
No 162
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.69 E-value=3.3e-07 Score=88.21 Aligned_cols=82 Identities=18% Similarity=0.240 Sum_probs=58.7
Q ss_pred HHHHHHHhCCCeEEEEccCCccCCc-cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEE
Q 013914 177 ELSAALKINNIDVSMVYPEPWCMPR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIV 255 (434)
Q Consensus 177 e~a~~l~~~g~~v~lv~~~~~~~~~-~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~v 255 (434)
++...+.+.|.+++..... +..|. ....++.+.+.+.+++.|++++.++.+.++..+ ++ ...+++ +++++.+|.|
T Consensus 77 d~~~~~~~~Gv~~~~~~~g-~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~-~~~v~~-~~~~i~ad~V 152 (400)
T TIGR00275 77 DLIDFFESLGLELKVEEDG-RVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD-DN-GFGVET-SGGEYEADKV 152 (400)
T ss_pred HHHHHHHHcCCeeEEecCC-EeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CC-eEEEEE-CCcEEEcCEE
Confidence 3445566678777765433 33322 134778889999999999999999999999763 22 345666 4568999999
Q ss_pred EEcccCc
Q 013914 256 VVGVGGR 262 (434)
Q Consensus 256 i~a~G~~ 262 (434)
|+|+|..
T Consensus 153 IlAtG~~ 159 (400)
T TIGR00275 153 ILATGGL 159 (400)
T ss_pred EECCCCc
Confidence 9999963
No 163
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.69 E-value=9.5e-08 Score=92.11 Aligned_cols=125 Identities=18% Similarity=0.225 Sum_probs=73.9
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC--------cc---------CccccCCC-----
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP--------AL---------SKAYLFPE----- 58 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~--------~~---------~~~~~~~~----- 58 (434)
|..+.+||+|||||++|+++|..|++.|++ |+|||+.+...+... .+ .-+++...
T Consensus 1 ~~~~~~dViIvGgG~aGl~~A~~La~~G~~---V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~ 77 (391)
T PRK08020 1 MTNQPTDIAIVGGGMVGAALALGLAQHGFS---VAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRS 77 (391)
T ss_pred CCcccccEEEECcCHHHHHHHHHHhcCCCE---EEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhC
Confidence 556679999999999999999999999987 999999753221100 00 00000000
Q ss_pred CC-CC-----CCCcccccC-----CCC------C----CCChhhHhhc-CcEEEcCCeeEEEECCCCE--EEccCCcEEE
Q 013914 59 GT-AR-----LPGFHVCVG-----SGG------E----RLLPEWYKEK-GIELILSTEIVRADIASKT--LLSATGLIFK 114 (434)
Q Consensus 59 ~~-~~-----~~~~~~~~~-----~~~------~----~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~ 114 (434)
.. .. ......... ... . ..+.+.+.+. +++++.++.++.+..+... +.+.++.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ 157 (391)
T PRK08020 78 HPYRRLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQ 157 (391)
T ss_pred cccceEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEE
Confidence 00 00 000000000 000 0 0111112333 8999999899988765543 5556777899
Q ss_pred cceEEEecCCCccc
Q 013914 115 YQILVIATGSTVLR 128 (434)
Q Consensus 115 ~d~lvlAtG~~~~~ 128 (434)
+|.+|.|.|.....
T Consensus 158 a~~vI~AdG~~S~v 171 (391)
T PRK08020 158 AKLVIGADGANSQV 171 (391)
T ss_pred eCEEEEeCCCCchh
Confidence 99999999986543
No 164
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.68 E-value=8.7e-07 Score=84.96 Aligned_cols=56 Identities=18% Similarity=0.155 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
+..+...+.+.+.+.|++++.+++|+++...+ + ...+.+++| ++.+|.||+|+|..
T Consensus 148 p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~-~~~v~~~~g-~~~a~~vV~A~G~~ 203 (376)
T PRK11259 148 PELAIKAHLRLAREAGAELLFNEPVTAIEADG-D-GVTVTTADG-TYEAKKLVVSAGAW 203 (376)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEeeC-C-eEEEEeCCC-EEEeeEEEEecCcc
Confidence 45666677777888999999999999998733 3 246777777 79999999999964
No 165
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.68 E-value=8e-08 Score=93.07 Aligned_cols=123 Identities=17% Similarity=0.186 Sum_probs=73.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcC--CCCCcEEEEeCCCCCCCC---CC-ccC---------ccccCC----C-------
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQG--VKPGELAIISKEAVAPYE---RP-ALS---------KAYLFP----E------- 58 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g--~~~~~V~vie~~~~~~~~---~~-~~~---------~~~~~~----~------- 58 (434)
++||+|||||++|+++|..|+++| ++ |+|+|+.+..... +. .++ -+++.. .
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~---v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 77 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLP---VTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMV 77 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCE---EEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEE
Confidence 379999999999999999999985 65 9999998642111 10 000 000000 0
Q ss_pred ----CC---CCCCCcccc----cCCC---------CCCCChhhHhhcCcEEEcCCeeEEEECCCCE--EEccCCcEEEcc
Q 013914 59 ----GT---ARLPGFHVC----VGSG---------GERLLPEWYKEKGIELILSTEIVRADIASKT--LLSATGLIFKYQ 116 (434)
Q Consensus 59 ----~~---~~~~~~~~~----~~~~---------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d 116 (434)
.. ......... .+.. ....+.+.+.+.|++++.++.++.++.+... +.+.++.++.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad 157 (403)
T PRK07333 78 ITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEAR 157 (403)
T ss_pred EEeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeC
Confidence 00 000000000 0000 0011222334568999999999998766654 555677889999
Q ss_pred eEEEecCCCccccc
Q 013914 117 ILVIATGSTVLRLT 130 (434)
Q Consensus 117 ~lvlAtG~~~~~~~ 130 (434)
.+|.|+|.......
T Consensus 158 ~vI~AdG~~S~vr~ 171 (403)
T PRK07333 158 LLVAADGARSKLRE 171 (403)
T ss_pred EEEEcCCCChHHHH
Confidence 99999998765443
No 166
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.68 E-value=6.4e-08 Score=94.26 Aligned_cols=58 Identities=34% Similarity=0.637 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 205 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
..+.+.|.+..++.||+++.++ |..+..+++|.+..|++++|+++++|++|=|+|++.
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence 4677888888999999999885 777777678889999999999999999999999754
No 167
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.68 E-value=3.5e-07 Score=89.91 Aligned_cols=54 Identities=20% Similarity=0.243 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
+..+...+.+.+++.|++++.+++|.+++. ++ ...|.+.+| ++.+|.||+|+|.
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~--~~-~~~v~t~~g-~v~A~~VV~Atga 235 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEE--GQ-PAVVRTPDG-QVTADKVVLALNA 235 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEee--CC-ceEEEeCCc-EEECCEEEEcccc
Confidence 456778888889999999999999999975 22 245777777 6999999999993
No 168
>PRK07236 hypothetical protein; Provisional
Probab=98.66 E-value=2.1e-07 Score=89.51 Aligned_cols=122 Identities=18% Similarity=0.151 Sum_probs=71.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC-c--cCc---cccCCCCCC-----CCC--Cccc-
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP-A--LSK---AYLFPEGTA-----RLP--GFHV- 68 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~-~--~~~---~~~~~~~~~-----~~~--~~~~- 68 (434)
|+.++|+|||||++|+++|..|++.|++ |+|+|+.+.....+. . +.. ..+...... ..+ ....
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~ 80 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWD---VDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYL 80 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEE
Confidence 4468999999999999999999999987 999999864211110 0 000 000000000 000 0000
Q ss_pred -ccCCC-----------CCCCChhhHh-h-cCcEEEcCCeeEEEECCCCE--EEccCCcEEEcceEEEecCCCcc
Q 013914 69 -CVGSG-----------GERLLPEWYK-E-KGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTVL 127 (434)
Q Consensus 69 -~~~~~-----------~~~~~~~~~~-~-~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lvlAtG~~~~ 127 (434)
..+.. ....+...+. . .+++++.++.++.+..+... +.+.+|+++.+|.||.|-|....
T Consensus 81 ~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~ 155 (386)
T PRK07236 81 DRDGRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRST 155 (386)
T ss_pred eCCCCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCch
Confidence 00000 0000111111 1 24678899999999766554 56678889999999999997543
No 169
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.66 E-value=2.5e-07 Score=91.14 Aligned_cols=99 Identities=21% Similarity=0.289 Sum_probs=73.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||++|+.+|..|++.|.+ |+++++.+... +.+ .. .. .....+.+++
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~l---~~~---------~~---~~--------~~~~~~~l~~ 223 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSK---VTVIEMLDRIL---PGE---------DA---EV--------SKVVAKALKK 223 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCCCCC---CCC---------CH---HH--------HHHHHHHHHH
Confidence 46899999999999999999999876 99999986421 000 00 00 1233456777
Q ss_pred cCcEEEcCCeeEEEECCCCEE--EccCC--cEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKTL--LSATG--LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v--~~~~~--~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.+++.+.+.+ ...++ .++.+|.+++|+|..|+..
T Consensus 224 ~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 224 KGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred cCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence 899999999999988665544 33455 4799999999999998755
No 170
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.66 E-value=6.7e-07 Score=85.36 Aligned_cols=52 Identities=23% Similarity=0.337 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 204 TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~-GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
+..+...+.+.+.+. |++++.+++|.+++. + .+.+.+| ++.+|.||+|+|..
T Consensus 144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~----~v~t~~g-~i~a~~VV~A~G~~ 196 (365)
T TIGR03364 144 PREAIPALAAYLAEQHGVEFHWNTAVTSVET--G----TVRTSRG-DVHADQVFVCPGAD 196 (365)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C----eEEeCCC-cEEeCEEEECCCCC
Confidence 455667777777665 999999999999964 2 5677777 47899999999964
No 171
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.66 E-value=5.7e-07 Score=86.41 Aligned_cols=59 Identities=24% Similarity=0.288 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHhcC-cEEEcCCeEEEEEecCCCcEEEEEeC-CCcEEECCEEEEcccCccC
Q 013914 204 TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKLK-DGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~G-V~~~~~~~v~~i~~~~~g~v~~v~~~-~g~~~~~D~vi~a~G~~p~ 264 (434)
-.++.+.+.+.+.+.+ |+++.+++|+.++.+++ .+ .++++ +|++++||++|-|=|....
T Consensus 103 ~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~-~v-~v~l~~dG~~~~a~llVgADG~~S~ 163 (387)
T COG0654 103 RSDLLNALLEAARALPNVTLRFGAEVEAVEQDGD-GV-TVTLSFDGETLDADLLVGADGANSA 163 (387)
T ss_pred hHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCC-ce-EEEEcCCCcEEecCEEEECCCCchH
Confidence 4567778888887766 99999999999998443 33 37777 9999999999999996543
No 172
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.65 E-value=3.8e-07 Score=89.70 Aligned_cols=58 Identities=22% Similarity=0.278 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc-----EEECCEEEEcccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR-----TLEADIVVVGVGG 261 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~-----~~~~D~vi~a~G~ 261 (434)
...+.+.+.+.+++.|++++++++|++|...+++++.++.+.+|+ ++.+|.||+|+..
T Consensus 212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 212 PERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred hHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 355678888888889999999999999986566777788887665 7899999999874
No 173
>PRK08244 hypothetical protein; Provisional
Probab=98.65 E-value=9.7e-08 Score=94.84 Aligned_cols=123 Identities=18% Similarity=0.287 Sum_probs=72.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC-CCC-cc---------Cccc---------------cCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY-ERP-AL---------SKAY---------------LFPE 58 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~-~~~-~~---------~~~~---------------~~~~ 58 (434)
++||+||||||+|+++|..|++.|.+ |+|||+.+.... .+. .+ .-++ +...
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~---v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~ 78 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVK---TCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGL 78 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecc
Confidence 48999999999999999999999997 999999865211 110 00 0000 0000
Q ss_pred C-CCCCCC------cccccCC-CCCCCChhhHhhcCcEEEcCCeeEEEECCCCEE--Ecc--CC-cEEEcceEEEecCCC
Q 013914 59 G-TARLPG------FHVCVGS-GGERLLPEWYKEKGIELILSTEIVRADIASKTL--LSA--TG-LIFKYQILVIATGST 125 (434)
Q Consensus 59 ~-~~~~~~------~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v--~~~--~~-~~~~~d~lvlAtG~~ 125 (434)
. ...+.. +...... .....+.+.+++.++++..++.++++..+...+ .+. ++ .++++|++|.|.|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~ 158 (493)
T PRK08244 79 DTRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAG 158 (493)
T ss_pred cccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCC
Confidence 0 000000 0000000 001112233445689999999999987666543 332 34 479999999999987
Q ss_pred ccccc
Q 013914 126 VLRLT 130 (434)
Q Consensus 126 ~~~~~ 130 (434)
.....
T Consensus 159 S~vR~ 163 (493)
T PRK08244 159 SIVRK 163 (493)
T ss_pred hHHHH
Confidence 64433
No 174
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.63 E-value=9.2e-08 Score=80.06 Aligned_cols=35 Identities=34% Similarity=0.424 Sum_probs=32.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
..||+|+|+||+||+||++|++.|++ |+++|++-.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~k---V~i~E~~ls 64 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLK---VAIFERKLS 64 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCce---EEEEEeecc
Confidence 36999999999999999999999998 999999855
No 175
>PRK06185 hypothetical protein; Provisional
Probab=98.63 E-value=1.2e-07 Score=91.88 Aligned_cols=39 Identities=28% Similarity=0.431 Sum_probs=34.6
Q ss_pred CC-CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 1 MA-EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 1 M~-~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
|| ...+||+|||||++|+++|..|++.|++ |+|+|+.+.
T Consensus 1 ~~~~~~~dV~IvGgG~~Gl~~A~~La~~G~~---v~liE~~~~ 40 (407)
T PRK06185 1 MAEVETTDCCIVGGGPAGMMLGLLLARAGVD---VTVLEKHAD 40 (407)
T ss_pred CCccccccEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCc
Confidence 54 4579999999999999999999999987 999999753
No 176
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.62 E-value=2.1e-07 Score=91.77 Aligned_cols=119 Identities=18% Similarity=0.291 Sum_probs=68.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC-CCCCCCCccCccccCCCC----CCCCC----------C--
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA-VAPYERPALSKAYLFPEG----TARLP----------G-- 65 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~-~~~~~~~~~~~~~~~~~~----~~~~~----------~-- 65 (434)
+..|||||||||+||+.||..+++.|.+ |+|+|++. ..+...|..+.+...... ...+. .
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~k---V~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq 78 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAK---TLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQ 78 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCc---EEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCc
Confidence 4569999999999999999999999998 99999984 222211111111100000 00000 0
Q ss_pred cccc---cCCC--------CC----CCChhhHhh-cCcEEEcCCeeEEEECCCCE---EEccCCcEEEcceEEEecCCC
Q 013914 66 FHVC---VGSG--------GE----RLLPEWYKE-KGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGST 125 (434)
Q Consensus 66 ~~~~---~~~~--------~~----~~~~~~~~~-~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~lvlAtG~~ 125 (434)
+... .+.. .. ....+.+.+ .+++++.. .|..+..++.. |.+.+|..+.++.+|+|||..
T Consensus 79 ~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~-~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 79 FRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQG-EVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred eeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence 0000 0000 00 001112222 37888764 78777655543 566788899999999999974
No 177
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.62 E-value=1.3e-07 Score=91.60 Aligned_cols=125 Identities=18% Similarity=0.189 Sum_probs=72.6
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC-CCC-----CCCC-ccC---------ccccCCCC---CC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA-VAP-----YERP-ALS---------KAYLFPEG---TA 61 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~-~~~-----~~~~-~~~---------~~~~~~~~---~~ 61 (434)
|| ..+||+|||||++|+++|..|++.|++ |+|+|+.. ... ..+. .++ -+++..-. ..
T Consensus 1 ~m-~~~dV~IvGaG~~Gl~~A~~L~~~G~~---v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~ 76 (405)
T PRK08850 1 MM-QSVDVAIIGGGMVGLALAAALKESDLR---IAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAA 76 (405)
T ss_pred CC-CcCCEEEECccHHHHHHHHHHHhCCCE---EEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCC
Confidence 55 478999999999999999999999987 99999962 110 0010 010 00000000 00
Q ss_pred CCCCcccc---------cCCC-C----------C----CCChhhHhh-cCcEEEcCCeeEEEECCCC--EEEccCCcEEE
Q 013914 62 RLPGFHVC---------VGSG-G----------E----RLLPEWYKE-KGIELILSTEIVRADIASK--TLLSATGLIFK 114 (434)
Q Consensus 62 ~~~~~~~~---------~~~~-~----------~----~~~~~~~~~-~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~ 114 (434)
....+... +... . . ..+.+.+.+ .++++..+++++.+..+.. ++.+.++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ 156 (405)
T PRK08850 77 PYIAMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALT 156 (405)
T ss_pred cccEEEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEE
Confidence 00000000 0000 0 0 001111122 3689999999998866544 46667888999
Q ss_pred cceEEEecCCCcccc
Q 013914 115 YQILVIATGSTVLRL 129 (434)
Q Consensus 115 ~d~lvlAtG~~~~~~ 129 (434)
+|.||.|.|......
T Consensus 157 a~lvIgADG~~S~vR 171 (405)
T PRK08850 157 AKLVVGADGANSWLR 171 (405)
T ss_pred eCEEEEeCCCCChhH
Confidence 999999999765433
No 178
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.61 E-value=1.4e-06 Score=86.85 Aligned_cols=101 Identities=24% Similarity=0.254 Sum_probs=81.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC--Ccc-----------CCccCCHHHHHHHHHHHHhcCcEEEcCCeEE
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE--PWC-----------MPRLFTADIAAFYEGYYANKGIKIIKGTVAV 229 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~--~~~-----------~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~ 229 (434)
...++|||+|+.|+.+|..+++.|.+|+++... ..+ .+.....++.+.+.+.+++.|++++.++++.
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~ 290 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS 290 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 458999999999999999999999999998652 111 0111356788899999999999999999999
Q ss_pred EEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013914 230 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 230 ~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
++...+ ....+.+.+|+++.+|.+|+|+|.+|..
T Consensus 291 ~I~~~~--~~~~V~~~~g~~i~a~~vViAtG~~~r~ 324 (517)
T PRK15317 291 KLEPAA--GLIEVELANGAVLKAKTVILATGARWRN 324 (517)
T ss_pred EEEecC--CeEEEEECCCCEEEcCEEEECCCCCcCC
Confidence 998732 3356778888899999999999987753
No 179
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.60 E-value=7e-07 Score=77.60 Aligned_cols=98 Identities=30% Similarity=0.434 Sum_probs=68.4
Q ss_pred EEECCCHHHHHHHHHHHhCCCe-EEEEccCCccC--------------Ccc----------------------------C
Q 013914 167 VVVGGGYIGLELSAALKINNID-VSMVYPEPWCM--------------PRL----------------------------F 203 (434)
Q Consensus 167 ~ViG~g~~~~e~a~~l~~~g~~-v~lv~~~~~~~--------------~~~----------------------------~ 203 (434)
+|||+|+.|+-+|..|.+.|.+ ++++++.+.+. +.. .
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999999 99999874431 000 0
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC--ccChh
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG--RPLIS 266 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~--~p~~~ 266 (434)
.+++.+++++..++.+++++++++|+++...+++ ..+++.+++++.||.||+|+|. .|...
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~~~~~~a~~VVlAtG~~~~p~~p 143 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRDGRTIRADRVVLATGHYSHPRIP 143 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEETTS-EEEEEEEEE---SSCSB---
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEecceeeeeeEEEeeeccCCCCcc
Confidence 1245678888899999999999999999985555 7899999988999999999995 55544
No 180
>PRK08013 oxidoreductase; Provisional
Probab=98.60 E-value=1.3e-07 Score=91.35 Aligned_cols=122 Identities=19% Similarity=0.242 Sum_probs=72.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC-------CC-ccC---------ccccCCCC---CCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE-------RP-ALS---------KAYLFPEG---TARLP 64 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~-------~~-~~~---------~~~~~~~~---~~~~~ 64 (434)
.+||+||||||+|+++|..|++.|++ |+|+|+.+..... +. .++ -+++.... .....
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~---v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~ 79 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLR---VAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYH 79 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCE---EEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCcccc
Confidence 68999999999999999999999987 9999998652110 00 000 01110000 00000
Q ss_pred Ccc---------ccc-----CCCC--C--------CCChhhHhh-cCcEEEcCCeeEEEECCCC--EEEccCCcEEEcce
Q 013914 65 GFH---------VCV-----GSGG--E--------RLLPEWYKE-KGIELILSTEIVRADIASK--TLLSATGLIFKYQI 117 (434)
Q Consensus 65 ~~~---------~~~-----~~~~--~--------~~~~~~~~~-~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~ 117 (434)
.+. ..+ +... . ..+.+.+.. .+++++.++++..++.+.. ++.+.+++++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~l 159 (400)
T PRK08013 80 GMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARL 159 (400)
T ss_pred EEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeE
Confidence 000 000 0000 0 001111223 3799999999999876554 35567888999999
Q ss_pred EEEecCCCcccc
Q 013914 118 LVIATGSTVLRL 129 (434)
Q Consensus 118 lvlAtG~~~~~~ 129 (434)
||-|.|......
T Consensus 160 vVgADG~~S~vR 171 (400)
T PRK08013 160 VVGADGANSWLR 171 (400)
T ss_pred EEEeCCCCcHHH
Confidence 999999765443
No 181
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.60 E-value=1.5e-06 Score=86.66 Aligned_cols=102 Identities=24% Similarity=0.241 Sum_probs=81.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC--CccC-----------CccCCHHHHHHHHHHHHhcCcEEEcCCeE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE--PWCM-----------PRLFTADIAAFYEGYYANKGIKIIKGTVA 228 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~--~~~~-----------~~~~~~~~~~~~~~~l~~~GV~~~~~~~v 228 (434)
....++|||+|+.|+.+|..+++.|.+|+++... ..+. +....+++.+.+.+.+++.|++++.+++|
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V 290 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRA 290 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEE
Confidence 4578999999999999999999999999998631 1111 11134677888888899999999999999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013914 229 VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 229 ~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
.++...+ ....+.+.+|+.+.+|.+|+|+|.+|..
T Consensus 291 ~~I~~~~--~~~~v~~~~g~~i~~d~lIlAtGa~~~~ 325 (515)
T TIGR03140 291 KKIETED--GLIVVTLESGEVLKAKSVIVATGARWRK 325 (515)
T ss_pred EEEEecC--CeEEEEECCCCEEEeCEEEECCCCCcCC
Confidence 9997632 2356777888889999999999987643
No 182
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.59 E-value=1.9e-07 Score=89.05 Aligned_cols=116 Identities=18% Similarity=0.304 Sum_probs=68.7
Q ss_pred cEEEECCCHHHHHHHHHH--HHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCC-------CCCCCCcccccCCC----
Q 013914 7 KYVILGGGVSAGYAAREF--AKQGVKPGELAIISKEAVAPYERPALSKAYLFPEG-------TARLPGFHVCVGSG---- 73 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l--~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~---- 73 (434)
||||||||+||+++|..| ++.|.+ |+|||++...++.... ...++.... ...++.........
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~---Vllid~~~~~~~~~~~-tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~ 76 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLS---VLLIDPKPKPPWPNDR-TWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRIL 76 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCE---EEEEcCCccccccCCc-ccccccccccchHHHHheecCceEEEeCCCceEE
Confidence 899999999999999999 555555 9999998765433222 111111110 01111111110000
Q ss_pred ---CC-----CCChh----hHhhcCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCcc
Q 013914 74 ---GE-----RLLPE----WYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVL 127 (434)
Q Consensus 74 ---~~-----~~~~~----~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~ 127 (434)
.+ ..+.+ .+...++ .+.+..|..|+.... .+.+.+|.+++++.+|-|+|..+.
T Consensus 77 ~~~~Y~~i~~~~f~~~l~~~~~~~~~-~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 77 IDYPYCMIDRADFYEFLLERAAAGGV-IRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred cccceEEEEHHHHHHHHHHHhhhCCe-EEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 00 01111 1222344 445568999988776 567788889999999999995543
No 183
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.59 E-value=1.5e-07 Score=90.42 Aligned_cols=123 Identities=17% Similarity=0.269 Sum_probs=72.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCC--C------ccC---------ccccCCCC---CCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYER--P------ALS---------KAYLFPEG---TARLP 64 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~--~------~~~---------~~~~~~~~---~~~~~ 64 (434)
.+||+|||||++|+++|..|++.|++ |+|||+.+...+.. + .++ -+++..-. ...+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~---v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~ 79 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRS---VAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYK 79 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCc---EEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccc
Confidence 58999999999999999999999987 99999875211110 0 010 00000000 00000
Q ss_pred Cc--------ccccC-----CCC--C----CCCh----hhHhh-cCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceE
Q 013914 65 GF--------HVCVG-----SGG--E----RLLP----EWYKE-KGIELILSTEIVRADIASK--TLLSATGLIFKYQIL 118 (434)
Q Consensus 65 ~~--------~~~~~-----~~~--~----~~~~----~~~~~-~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~l 118 (434)
.+ ...+. ... . ..+. +.+.. .+++++.++++.+++.+.. ++++.++.++++|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lv 159 (384)
T PRK08849 80 RLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWV 159 (384)
T ss_pred eEEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEE
Confidence 00 00000 000 0 0000 11112 3689999999998876554 567788889999999
Q ss_pred EEecCCCccccc
Q 013914 119 VIATGSTVLRLT 130 (434)
Q Consensus 119 vlAtG~~~~~~~ 130 (434)
|.|.|.......
T Consensus 160 IgADG~~S~vR~ 171 (384)
T PRK08849 160 IGADGANSQVRQ 171 (384)
T ss_pred EEecCCCchhHH
Confidence 999998765443
No 184
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.58 E-value=8.3e-07 Score=91.24 Aligned_cols=57 Identities=16% Similarity=0.213 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
+..+...+.+.+++ |++++.+++|+++... ++. ..+.+.+|..+.+|.||+|+|...
T Consensus 407 p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~-~~~-~~v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 407 PAELCRALLALAGQ-QLTIHFGHEVARLERE-DDG-WQLDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred HHHHHHHHHHhccc-CcEEEeCCEeeEEEEe-CCE-EEEEECCCcEEECCEEEECCCCCc
Confidence 45777888888888 9999999999999863 333 347788887788999999999643
No 185
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.57 E-value=1.9e-07 Score=90.45 Aligned_cols=123 Identities=18% Similarity=0.254 Sum_probs=72.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC--C------CC-CC-cc---C------ccccCCCC---CCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA--P------YE-RP-AL---S------KAYLFPEG---TAR 62 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~--~------~~-~~-~~---~------~~~~~~~~---~~~ 62 (434)
.+||+|||||++|+++|..|++.|++ |+|||+.+.. . +. +. .+ + -+++..-. ...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~---v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~ 78 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLE---VLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASP 78 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCE---EEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcc
Confidence 48999999999999999999999987 9999998621 0 00 00 00 0 00000000 000
Q ss_pred CCCc-----------cccc---CCCC----------CCCChhhHhhcCcEEEcCCeeEEEECCCCE--EEccCCcEEEcc
Q 013914 63 LPGF-----------HVCV---GSGG----------ERLLPEWYKEKGIELILSTEIVRADIASKT--LLSATGLIFKYQ 116 (434)
Q Consensus 63 ~~~~-----------~~~~---~~~~----------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d 116 (434)
...+ .+.. .... ...+.+.+.+.+++++.++.+.+++.+... +.+.++.++.+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~ 158 (405)
T PRK05714 79 YSEMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAP 158 (405)
T ss_pred ceeEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeC
Confidence 0000 0000 0000 001112233468999999999998765543 556778889999
Q ss_pred eEEEecCCCccccc
Q 013914 117 ILVIATGSTVLRLT 130 (434)
Q Consensus 117 ~lvlAtG~~~~~~~ 130 (434)
.+|.|.|.......
T Consensus 159 ~vVgAdG~~S~vR~ 172 (405)
T PRK05714 159 LVVAADGANSAVRR 172 (405)
T ss_pred EEEEecCCCchhHH
Confidence 99999997654433
No 186
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.57 E-value=2.3e-06 Score=82.36 Aligned_cols=56 Identities=23% Similarity=0.289 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHhcC-cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 204 TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~G-V~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
+..+.+.+.+.+++.| ..+..++.+..+... . ....+.+.+|+ +.+|.||+|+|..
T Consensus 155 p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~-i~a~~vv~a~G~~ 211 (387)
T COG0665 155 PRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGT-IEADKVVLAAGAW 211 (387)
T ss_pred HHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCcc-EEeCEEEEcCchH
Confidence 4577888888899999 456668888888763 2 56788888886 9999999999943
No 187
>PRK06126 hypothetical protein; Provisional
Probab=98.56 E-value=3.7e-07 Score=91.85 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=33.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
+..+||+|||||++|+++|..|+++|++ |+|+|+.+.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~---v~viEr~~~ 41 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVD---SILVERKDG 41 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCC
Confidence 4468999999999999999999999998 999999864
No 188
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.56 E-value=1.9e-06 Score=85.63 Aligned_cols=64 Identities=19% Similarity=0.194 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe--CCC--cEEECCEEEEccc-CccChhhh
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL--KDG--RTLEADIVVVGVG-GRPLISLF 268 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~--~~g--~~~~~D~vi~a~G-~~p~~~~~ 268 (434)
...+.+.+.+.+++.|++++++++++++.. +++++.++.. .++ .++.++.||+|+| +.+|.+++
T Consensus 189 g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~-~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~ 257 (506)
T PRK06481 189 GGYLVDGLLKNVQERKIPLFVNADVTKITE-KDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMI 257 (506)
T ss_pred hHHHHHHHHHHHHHcCCeEEeCCeeEEEEe-cCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHH
Confidence 456778888889999999999999999986 4677766655 343 2588999999998 77665544
No 189
>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....
Probab=98.56 E-value=6.4e-08 Score=74.94 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=48.5
Q ss_pred CCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013914 377 ATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK 433 (434)
Q Consensus 377 ~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~~ 433 (434)
..++|+|+++ ++++|||+|++|++++|+ +.++.+|++++|++++.....+.++|.+.
T Consensus 46 ~~~g~~Kli~d~~t~~IlGa~~vg~~a~e~I~~~~~ai~~~~t~~~l~~~~~~~Pt~se~ 105 (110)
T PF02852_consen 46 ETEGFVKLIFDKKTGRILGAQIVGPNASELINELALAIQNGLTVEDLADDIFYHPTFSEA 105 (110)
T ss_dssp TTEEEEEEEEETTTTBEEEEEEEETTHHHHHHHHHHHHHTTSBHHHHHTSBSSSTSTGHH
T ss_pred CcceeeEEEEEeeccceeeeeeecCchHHHHHHHHHHHHcCCCHHHHhCCeeeCCChhHH
Confidence 3678889887 479999999999999995 99999999999999777777777777653
No 190
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.55 E-value=2.5e-06 Score=83.28 Aligned_cols=135 Identities=19% Similarity=0.194 Sum_probs=90.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc---------------------------------------
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL--------------------------------------- 202 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~--------------------------------------- 202 (434)
..++|+|||+|++|+-+|..|.+.|.+|+++++.+.+...+
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 36899999999999999999999999999998764321000
Q ss_pred --------------------CCHHHHHHHHHHHHhcCcE--EEcCCeEEEEEecCCCcEEEEEeCCC--c--EEECCEEE
Q 013914 203 --------------------FTADIAAFYEGYYANKGIK--IIKGTVAVGFTTNADGEVKEVKLKDG--R--TLEADIVV 256 (434)
Q Consensus 203 --------------------~~~~~~~~~~~~l~~~GV~--~~~~~~v~~i~~~~~g~v~~v~~~~g--~--~~~~D~vi 256 (434)
-..++.+++++..++.|+. ++++++|.+++..+ ....|++.++ . +..+|.||
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~w~V~~~~~~~~~~~~~~d~VI 166 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GKWRVQSKNSGGFSKDEIFDAVV 166 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC--CeEEEEEEcCCCceEEEEcCEEE
Confidence 0146778888888899988 88999999998732 2345655432 2 45799999
Q ss_pred Eccc--CccChhhhhccccccCCcEEeCCCCCC----CCCcEEEecccc
Q 013914 257 VGVG--GRPLISLFKGQVAENKGGIETDDFFKT----SADDVYAVGDVA 299 (434)
Q Consensus 257 ~a~G--~~p~~~~~~~~~~~~~g~i~vd~~~~t----~~~~iya~GD~~ 299 (434)
+|+| ..|+..-++..-.+.+..+.... ++. ..++|-++|-..
T Consensus 167 vAtG~~~~P~~P~ipG~~~f~G~~iHs~~-yr~~~~~~gk~VvVVG~G~ 214 (461)
T PLN02172 167 VCNGHYTEPNVAHIPGIKSWPGKQIHSHN-YRVPDPFKNEVVVVIGNFA 214 (461)
T ss_pred EeccCCCCCcCCCCCCcccCCceEEEecc-cCCccccCCCEEEEECCCc
Confidence 9999 56665433221112222233322 232 356788888543
No 191
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.55 E-value=2.7e-06 Score=81.82 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhcC-cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013914 205 ADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 205 ~~~~~~~~~~l~~~G-V~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~ 264 (434)
..+.+.+.+.+++.| ++++.+++|++++.+++ . ..+++++|+++.+|+||.|.|....
T Consensus 106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~-~-~~v~~~~g~~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 106 RVLQQALWERLQEYPNVTLLCPARVVELPRHSD-H-VELTLDDGQQLRARLLVGADGANSK 164 (385)
T ss_pred HHHHHHHHHHHHhCCCcEEecCCeEEEEEecCC-e-eEEEECCCCEEEeeEEEEeCCCCCH
Confidence 456677777777877 99999999999987333 3 4678889989999999999997543
No 192
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.55 E-value=8.2e-07 Score=73.45 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=29.5
Q ss_pred EEECCCHHHHHHHHHHHHcC--CCCCcEEEEeCCCC
Q 013914 9 VILGGGVSAGYAAREFAKQG--VKPGELAIISKEAV 42 (434)
Q Consensus 9 vIIG~G~aGl~aA~~l~~~g--~~~~~V~vie~~~~ 42 (434)
+|||+|++|++++.+|.++. .+..+|+|||+++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 59999999999999999984 44678999999765
No 193
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.54 E-value=2.8e-07 Score=89.65 Aligned_cols=36 Identities=22% Similarity=0.499 Sum_probs=33.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
..+||+|||||+||+++|..|++.|++ |+|+|+.+.
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~---v~v~E~~~~ 52 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLR---IALIEAQPA 52 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCE---EEEEecCCc
Confidence 368999999999999999999999987 999999865
No 194
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.53 E-value=3.2e-07 Score=92.35 Aligned_cols=36 Identities=22% Similarity=0.382 Sum_probs=33.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.++||+|||||++|+++|..|++.|.+ |+|||+.+.
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~---v~viE~~~~ 57 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVP---VVLLDDDDT 57 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCc---EEEEeCCCC
Confidence 468999999999999999999999987 999999874
No 195
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.53 E-value=2.8e-07 Score=88.76 Aligned_cols=36 Identities=28% Similarity=0.577 Sum_probs=33.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
++||+|||||+||+++|..|++.|.+ |+|+|+.+..
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~---v~v~E~~~~~ 40 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLR---VALLAPRAPP 40 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCe---EEEEecCCCc
Confidence 68999999999999999999999987 9999998653
No 196
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.53 E-value=5e-07 Score=90.65 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=33.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
..+||+|||||++|+++|..|++.|.+ |+|||+.+.
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~---v~v~Er~~~ 44 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVR---VLVLERWPT 44 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCC
Confidence 368999999999999999999999987 999999864
No 197
>PRK07233 hypothetical protein; Provisional
Probab=98.53 E-value=5.8e-07 Score=87.95 Aligned_cols=55 Identities=22% Similarity=0.212 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 205 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
..+.+.+.+.+++.|++++++++|++|+.+ ++.+..+ ..+++++++|.||+|++.
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~-~~~~~~~-~~~~~~~~ad~vI~a~p~ 252 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVID-GGGVTGV-EVDGEEEDFDAVISTAPP 252 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEEc-CCceEEE-EeCCceEECCEEEECCCH
Confidence 457788888889999999999999999873 3444333 356678999999999984
No 198
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.52 E-value=2.9e-07 Score=88.88 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=34.5
Q ss_pred cCcEEEcCCeeEEEECCCCE--EEccCCcEEEcceEEEecCCCccc
Q 013914 85 KGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTVLR 128 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lvlAtG~~~~~ 128 (434)
.+++++.++.++.+...... +.+.++.++.+|.+|.|.|.....
T Consensus 126 ~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~v 171 (395)
T PRK05732 126 PGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSAL 171 (395)
T ss_pred CCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChhh
Confidence 47899999899988765543 556677789999999999976543
No 199
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.52 E-value=8.1e-07 Score=85.63 Aligned_cols=99 Identities=15% Similarity=0.302 Sum_probs=73.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC--eEEEEccCCccCC-c-cCCHHHH---------HHHHHHHHhcCcEEEcCCeEE
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNI--DVSMVYPEPWCMP-R-LFTADIA---------AFYEGYYANKGIKIIKGTVAV 229 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~--~v~lv~~~~~~~~-~-~~~~~~~---------~~~~~~l~~~GV~~~~~~~v~ 229 (434)
.++++|||+|+.|+.+|..|++.+. +|+++.+.+.+.- + .+.+.+. ..-.+.+++.+|+++.++.|.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~ 82 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK 82 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence 5689999999999999999999875 7999987654311 0 1222111 001344677899999999999
Q ss_pred EEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013914 230 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 230 ~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
.++. +. ..+.+.+|+++.+|.+|+|||.+|..
T Consensus 83 ~id~--~~--~~v~~~~g~~~~yd~LViATGs~~~~ 114 (396)
T PRK09754 83 TLGR--DT--RELVLTNGESWHWDQLFIATGAAARP 114 (396)
T ss_pred EEEC--CC--CEEEECCCCEEEcCEEEEccCCCCCC
Confidence 9976 33 25677888899999999999988753
No 200
>PLN02697 lycopene epsilon cyclase
Probab=98.51 E-value=2.9e-07 Score=90.67 Aligned_cols=116 Identities=20% Similarity=0.284 Sum_probs=67.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCc-cCccccCCCC-----CCCCCCccccc--------
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA-LSKAYLFPEG-----TARLPGFHVCV-------- 70 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~-------- 70 (434)
.+||+||||||||+++|..|++.|++ |+|||+.. ++..+. .+...+.... ....++.....
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~---V~LIe~~~--p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~ 182 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLN---VGLIGPDL--PFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMI 182 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCc---EEEecCcc--cCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeec
Confidence 58999999999999999999999987 99999863 222110 1000000000 00000000000
Q ss_pred CCCC----C----CCChhhHhhcCcEEEcCCeeEEEECCCCE---EEccCCcEEEcceEEEecCCCc
Q 013914 71 GSGG----E----RLLPEWYKEKGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGSTV 126 (434)
Q Consensus 71 ~~~~----~----~~~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~lvlAtG~~~ 126 (434)
+... . ..+.+.+.+.|+++. +..|..+..+... +...++.++.++.+|.|+|...
T Consensus 183 ~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~-~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 183 GRAYGRVSRTLLHEELLRRCVESGVSYL-SSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred cCcccEEcHHHHHHHHHHHHHhcCCEEE-eeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 0000 0 111122234688884 4588888754432 3456777899999999999765
No 201
>PRK11445 putative oxidoreductase; Provisional
Probab=98.51 E-value=5.7e-07 Score=85.19 Aligned_cols=119 Identities=18% Similarity=0.264 Sum_probs=67.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCc---cCc---------cccCCCCC-C-----CCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPA---LSK---------AYLFPEGT-A-----RLP 64 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~---~~~~~~---~~~---------~~~~~~~~-~-----~~~ 64 (434)
+||+||||||||+++|..|++. ++ |+|+|+.+.. ++..++ ++. ++..+... . ...
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~---V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~ 77 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MK---VIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVK 77 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CC---EEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceee
Confidence 7999999999999999999997 76 9999998642 121111 110 00000000 0 000
Q ss_pred Ccccc------cCCCC----CCCChhhH---hhcCcEEEcCCeeEEEECCCCE--EEc-cCCc--EEEcceEEEecCCCc
Q 013914 65 GFHVC------VGSGG----ERLLPEWY---KEKGIELILSTEIVRADIASKT--LLS-ATGL--IFKYQILVIATGSTV 126 (434)
Q Consensus 65 ~~~~~------~~~~~----~~~~~~~~---~~~~v~~~~~~~v~~i~~~~~~--v~~-~~~~--~~~~d~lvlAtG~~~ 126 (434)
..... .+... ...+..++ ...++++..++.+..+...... +.. .++. ++++|.+|.|+|...
T Consensus 78 ~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S 157 (351)
T PRK11445 78 TIDLANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANS 157 (351)
T ss_pred EecccccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCc
Confidence 00000 00000 00111222 2357899999888888765543 333 3553 689999999999865
Q ss_pred cc
Q 013914 127 LR 128 (434)
Q Consensus 127 ~~ 128 (434)
..
T Consensus 158 ~v 159 (351)
T PRK11445 158 MV 159 (351)
T ss_pred HH
Confidence 43
No 202
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.51 E-value=1.4e-07 Score=93.55 Aligned_cols=56 Identities=21% Similarity=0.194 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 205 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
..+.+.+.+.++++|++++.+++|++|.. +++++..|.+.+|+++++|.||+++|.
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~g~~~~ad~vV~a~~~ 284 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIIL-ENGKAVGVKLADGEKIYAKRIVSNATR 284 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEe-cCCcEEEEEeCCCCEEEcCEEEECCCh
Confidence 56788889999999999999999999987 457788999999989999999999884
No 203
>PRK07121 hypothetical protein; Validated
Probab=98.51 E-value=5.4e-06 Score=82.28 Aligned_cols=66 Identities=23% Similarity=0.202 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC-Cc--EEEC-CEEEEccc-CccChhhhh
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD-GR--TLEA-DIVVVGVG-GRPLISLFK 269 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~-g~--~~~~-D~vi~a~G-~~p~~~~~~ 269 (434)
...+.+.+.+.+++.|++++++++++++..++++++.++...+ ++ .+.+ +.||+|+| +..|.+++.
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em~~ 246 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAMNREMVA 246 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHHHH
Confidence 4567788888889999999999999999875567887776643 32 4778 99999999 455555554
No 204
>PRK05868 hypothetical protein; Validated
Probab=98.51 E-value=5.7e-07 Score=85.86 Aligned_cols=119 Identities=16% Similarity=0.157 Sum_probs=70.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcc--C---------ccccCC--CCCCCCCCcc-----
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPAL--S---------KAYLFP--EGTARLPGFH----- 67 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~--~---------~~~~~~--~~~~~~~~~~----- 67 (434)
+||+|||||++|+++|..|++.|++ |+|+|+.+...-....+ . -+++.. ..........
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~---v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~ 78 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYS---VTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRD 78 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCC---EEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCC
Confidence 4899999999999999999999987 99999986522100000 0 000000 0000000000
Q ss_pred --------------cccCCCCC----CCChhhHh---hcCcEEEcCCeeEEEECCCCE--EEccCCcEEEcceEEEecCC
Q 013914 68 --------------VCVGSGGE----RLLPEWYK---EKGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGS 124 (434)
Q Consensus 68 --------------~~~~~~~~----~~~~~~~~---~~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lvlAtG~ 124 (434)
........ ..+.+.+. ..+++++.+++++.++.+... +.+.++.++.+|.||-|.|.
T Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~ 158 (372)
T PRK05868 79 GNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGL 158 (372)
T ss_pred CCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCC
Confidence 00000000 01112222 257899999999998765543 56678888999999999997
Q ss_pred Ccc
Q 013914 125 TVL 127 (434)
Q Consensus 125 ~~~ 127 (434)
...
T Consensus 159 ~S~ 161 (372)
T PRK05868 159 HSN 161 (372)
T ss_pred Cch
Confidence 543
No 205
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.50 E-value=5.3e-07 Score=87.77 Aligned_cols=37 Identities=24% Similarity=0.514 Sum_probs=33.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
..++||+||||||||+++|..|++.|++ |+|+|+...
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~---VlllEr~~~ 73 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGGIE---TFLIERKLD 73 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCC
Confidence 3469999999999999999999999997 999999753
No 206
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.50 E-value=3.3e-07 Score=66.42 Aligned_cols=78 Identities=19% Similarity=0.417 Sum_probs=57.7
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhcC
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 86 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (434)
+++|||||+.|+-+|..|++.|.+ |+||++++... +... .. ......+.+++.|
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~---vtli~~~~~~~---~~~~---------~~-----------~~~~~~~~l~~~g 54 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKE---VTLIERSDRLL---PGFD---------PD-----------AAKILEEYLRKRG 54 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSE---EEEEESSSSSS---TTSS---------HH-----------HHHHHHHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHHhCcE---EEEEeccchhh---hhcC---------HH-----------HHHHHHHHHHHCC
Confidence 589999999999999999999876 99999987522 0000 00 0124467788899
Q ss_pred cEEEcCCeeEEEECCCCE--EEccCC
Q 013914 87 IELILSTEIVRADIASKT--LLSATG 110 (434)
Q Consensus 87 v~~~~~~~v~~i~~~~~~--v~~~~~ 110 (434)
++++.++.+.++..+... |.+.||
T Consensus 55 V~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 55 VEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp EEEEESEEEEEEEEETTSEEEEEETS
T ss_pred CEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 999999999999877654 555443
No 207
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.49 E-value=9.6e-07 Score=87.78 Aligned_cols=57 Identities=18% Similarity=0.190 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-----cEEECCEEEEcccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-----RTLEADIVVVGVGG 261 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g-----~~~~~D~vi~a~G~ 261 (434)
-..+.+.+.+.+++.|++++++++|++|..+ ++++..+.+.++ +++.+|.||+++..
T Consensus 231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~ 292 (492)
T TIGR02733 231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKADDVVANLPP 292 (492)
T ss_pred HHHHHHHHHHHHHhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECCEEEECCCH
Confidence 3568888999999999999999999999873 455555666554 57899999999884
No 208
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.48 E-value=2.9e-07 Score=92.11 Aligned_cols=58 Identities=19% Similarity=0.217 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC---CC--cEEECCEEEEcccCc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DG--RTLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~---~g--~~~~~D~vi~a~G~~ 262 (434)
+..+...+...++++|++++.+++|+++.. +++++.++++. ++ .++.+|.||.|+|.-
T Consensus 148 p~rl~~al~~~A~~~Ga~i~~~t~V~~i~~-~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~w 210 (546)
T PRK11101 148 PFRLTAANMLDAKEHGAQILTYHEVTGLIR-EGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIW 210 (546)
T ss_pred HHHHHHHHHHHHHhCCCEEEeccEEEEEEE-cCCeEEEEEEEEcCCCcEEEEECCEEEECCChh
Confidence 456667777778899999999999999987 34566666652 23 378999999999953
No 209
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.48 E-value=2.5e-06 Score=78.17 Aligned_cols=58 Identities=21% Similarity=0.360 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC------C---------cEEECCEEEEcccCc
Q 013914 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD------G---------RTLEADIVVVGVGGR 262 (434)
Q Consensus 205 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~------g---------~~~~~D~vi~a~G~~ 262 (434)
..+.+++-+..++.||+++++....++..+++|.+.++.+.| | -++.+..-|+|-|-+
T Consensus 183 ~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~ 255 (621)
T KOG2415|consen 183 GQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCH 255 (621)
T ss_pred HHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEecccc
Confidence 345677778889999999999999999888899999988765 2 267788888887744
No 210
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.47 E-value=2.5e-07 Score=82.39 Aligned_cols=58 Identities=17% Similarity=0.215 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEe-cCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTT-NADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~-~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
.....+.++..+++.|+.|+.+..++.+.. ++++....|.+.+|..+.++.+|+++|-
T Consensus 152 a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~Ga 210 (399)
T KOG2820|consen 152 AAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGA 210 (399)
T ss_pred HHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecH
Confidence 456678899999999999999999988863 3456778899999999999999999994
No 211
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.47 E-value=6.2e-06 Score=81.18 Aligned_cols=55 Identities=29% Similarity=0.405 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhcCc-EEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 205 ADIAAFYEGYYANKGI-KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 205 ~~~~~~~~~~l~~~GV-~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
..+...+...++..+. +++++++|++|+..+++ ..+.+.+|+++.+|.||+|+..
T Consensus 218 ~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~--~~v~~~~g~~~~~d~vI~a~p~ 273 (451)
T PRK11883 218 GGLQSLIEALEEKLPAGTIHKGTPVTKIDKSGDG--YEIVLSNGGEIEADAVIVAVPH 273 (451)
T ss_pred cHHHHHHHHHHHhCcCCeEEeCCEEEEEEEcCCe--EEEEECCCCEEEcCEEEECCCH
Confidence 3344444444444443 89999999999874333 4677888989999999999883
No 212
>PRK06753 hypothetical protein; Provisional
Probab=98.47 E-value=1.4e-06 Score=83.42 Aligned_cols=118 Identities=16% Similarity=0.184 Sum_probs=68.7
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCc--cC---------ccccCC--CCCCCCCCcccc--cC
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA--LS---------KAYLFP--EGTARLPGFHVC--VG 71 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~--~~---------~~~~~~--~~~~~~~~~~~~--~~ 71 (434)
||+|||||++|+++|..|++.|++ |+|+|+.+........ +. -+++.. ........+... .+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~---v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g 78 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHE---VKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKG 78 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCC
Confidence 799999999999999999999987 9999998753211000 00 000000 000000000000 00
Q ss_pred -----------CCCC----CCChhhHhh--cCcEEEcCCeeEEEECCCCE--EEccCCcEEEcceEEEecCCCcc
Q 013914 72 -----------SGGE----RLLPEWYKE--KGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTVL 127 (434)
Q Consensus 72 -----------~~~~----~~~~~~~~~--~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lvlAtG~~~~ 127 (434)
.... ..+...+.+ .+.+++.++.+++++.++.. +++.++.++.+|.||.|.|....
T Consensus 79 ~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 79 TLLNKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSK 153 (373)
T ss_pred CEEeecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchH
Confidence 0000 011122222 24578889999999766553 55678888999999999996543
No 213
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.46 E-value=4.6e-06 Score=82.35 Aligned_cols=40 Identities=30% Similarity=0.411 Sum_probs=33.2
Q ss_pred cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 220 IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 220 V~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
.+++++++|.+|+..+++ ..+++++|+++.+|.||+|+..
T Consensus 238 ~~i~~~~~V~~I~~~~~~--~~v~~~~g~~~~ad~VI~t~P~ 277 (462)
T TIGR00562 238 TKVYKGTKVTKLSHRGSN--YTLELDNGVTVETDSVVVTAPH 277 (462)
T ss_pred CeEEcCCeEEEEEecCCc--EEEEECCCcEEEcCEEEECCCH
Confidence 789999999999874444 4577888888999999999884
No 214
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.46 E-value=5.1e-07 Score=86.86 Aligned_cols=32 Identities=25% Similarity=0.616 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~ 40 (434)
|||+||||||||+++|+.|++.|++ |+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~---V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIE---TILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCc---EEEEECC
Confidence 6999999999999999999999987 9999998
No 215
>PRK07588 hypothetical protein; Provisional
Probab=98.45 E-value=1.1e-06 Score=84.58 Aligned_cols=121 Identities=17% Similarity=0.152 Sum_probs=70.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC--cc-Cc--------cc----cCCCC-CCCC-----C
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP--AL-SK--------AY----LFPEG-TARL-----P 64 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~--~~-~~--------~~----~~~~~-~~~~-----~ 64 (434)
.||+|||||++|+++|..|++.|.+ |+|+|+.+...-... .+ .. ++ ..... ...+ .
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 77 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHE---PTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPT 77 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCc---eEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCC
Confidence 3899999999999999999999987 999999865211000 00 00 00 00000 0000 0
Q ss_pred C-----ccc-----ccCCCCCCC----ChhhH---hhcCcEEEcCCeeEEEECCCCE--EEccCCcEEEcceEEEecCCC
Q 013914 65 G-----FHV-----CVGSGGERL----LPEWY---KEKGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGST 125 (434)
Q Consensus 65 ~-----~~~-----~~~~~~~~~----~~~~~---~~~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lvlAtG~~ 125 (434)
+ +.. ..+...... +...+ ...+++++.++.+.+++.+... +.+.+|+++.+|.+|.|.|..
T Consensus 78 g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~ 157 (391)
T PRK07588 78 GRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLH 157 (391)
T ss_pred CCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 0 000 000000000 11111 1236899999999999876654 556788889999999999976
Q ss_pred cccc
Q 013914 126 VLRL 129 (434)
Q Consensus 126 ~~~~ 129 (434)
....
T Consensus 158 S~vR 161 (391)
T PRK07588 158 SHVR 161 (391)
T ss_pred ccch
Confidence 5443
No 216
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.44 E-value=1.6e-05 Score=78.24 Aligned_cols=58 Identities=28% Similarity=0.494 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHhcC-cEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccCc
Q 013914 204 TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~G-V~~~~~~~v~~i~~~~~g~v~~v~~---~~g~--~~~~D~vi~a~G~~ 262 (434)
...+.+.+.+.+++.| ++++++++|++++..+++.+ .+.+ .+|+ ++.++.||+|+|.-
T Consensus 182 ~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~ 245 (494)
T PRK05257 182 FGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAKFVFIGAGGG 245 (494)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcCEEEECCCcc
Confidence 4567788888888876 89999999999987555533 2332 3453 68999999999964
No 217
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.44 E-value=5.9e-07 Score=87.38 Aligned_cols=60 Identities=23% Similarity=0.295 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC---CCc--EEECCEEEEcccCccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DGR--TLEADIVVVGVGGRPL 264 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~---~g~--~~~~D~vi~a~G~~p~ 264 (434)
...+.+.+.+.+++.|++++++++++++.. +++++.++... +|+ ++.++.||+|+|--..
T Consensus 140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~-e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGVDIRFNTRVTDLIT-EDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESEEEEEEEE-ETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHHhhcCeeeeccceeeeEEE-eCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 467788889999999999999999999988 57788888776 454 5779999999995443
No 218
>PRK06847 hypothetical protein; Provisional
Probab=98.44 E-value=4e-06 Score=80.37 Aligned_cols=102 Identities=26% Similarity=0.342 Sum_probs=79.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC------------------------------------------
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP------------------------------------------ 200 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~------------------------------------------ 200 (434)
.++|+|||+|+.|+-+|..|.+.|.+|+++++.+.+..
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~ 83 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT 83 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence 56899999999999999999999999999987642100
Q ss_pred ---c----------------cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 201 ---R----------------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 201 ---~----------------~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
. ....++.+.+.+.+++.|+++++++++.+++.++++ ..+.+.+|+++.+|.||.|.|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vI~AdG~ 161 (375)
T PRK06847 84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDG--VTVTFSDGTTGRYDLVVGADGL 161 (375)
T ss_pred EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE--EEEEEcCCCEEEcCEEEECcCC
Confidence 0 001345566777778889999999999999873333 5678889999999999999997
Q ss_pred ccChh
Q 013914 262 RPLIS 266 (434)
Q Consensus 262 ~p~~~ 266 (434)
.+...
T Consensus 162 ~s~~r 166 (375)
T PRK06847 162 YSKVR 166 (375)
T ss_pred Ccchh
Confidence 76553
No 219
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.43 E-value=2.3e-07 Score=90.15 Aligned_cols=115 Identities=21% Similarity=0.217 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCC----------------CCCCC------C
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPE----------------GTARL------P 64 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~----------------~~~~~------~ 64 (434)
||||||||+||++||..+++.|.+ |+|||+.+.++.....-....+... ..... .
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~---VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~ 77 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAK---VLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQED 77 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS----EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST----------
T ss_pred CEEEECccHHHHHHHHHHHHCCCE---EEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccc
Confidence 899999999999999999999998 9999999874321100000000000 00000 0
Q ss_pred Ccc----cccCCC-CCCCChhhHhhcCcEEEcCCeeEEEECCCCE---EEccC---CcEEEcceEEEecCC
Q 013914 65 GFH----VCVGSG-GERLLPEWYKEKGIELILSTEIVRADIASKT---LLSAT---GLIFKYQILVIATGS 124 (434)
Q Consensus 65 ~~~----~~~~~~-~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~~~~---~~~~~~d~lvlAtG~ 124 (434)
... ..+... ....+.+++.+.|++++.++.+..+..++.. |.+.+ ..++.++.+|-|||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 78 RYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 000 000101 1123455566789999999999998887744 33433 357999999999994
No 220
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.42 E-value=1.1e-06 Score=85.71 Aligned_cols=100 Identities=18% Similarity=0.286 Sum_probs=75.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+|+|||+|++|+.+|..|++.|.+ |+++++.+... . +. + ...+ .....+.+++
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~~-~-~~-----~----~~~~-----------~~~~~~~l~~ 191 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKN---VTLIHRSERIL-N-KL-----F----DEEM-----------NQIVEEELKK 191 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCc---EEEEECCcccC-c-cc-----c----CHHH-----------HHHHHHHHHH
Confidence 36899999999999999999998876 99999875421 0 00 0 0000 1234566778
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.+++.+...+.+.+++++.+|.+++|+|.+|+..
T Consensus 192 ~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 236 (427)
T TIGR03385 192 HEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNSE 236 (427)
T ss_pred cCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCCHH
Confidence 899999999999998766544566788899999999999988643
No 221
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.42 E-value=1.9e-06 Score=81.90 Aligned_cols=112 Identities=16% Similarity=0.209 Sum_probs=65.9
Q ss_pred cEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEeCCCCCCCCCCccCccccCCCC------------CCCCCCcccccCC
Q 013914 7 KYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAVAPYERPALSKAYLFPEG------------TARLPGFHVCVGS 72 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~--g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ 72 (434)
||+|||||+||+++|..|++. |++ |+|+|+.+...-++.+ .++.... ....+.+......
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~---V~lle~~~~~~~~~tw---~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~ 74 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFR---IRVIEAGRTIGGNHTW---SFFDSDLSDAQHAWLADLVQTDWPGYEVRFPK 74 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCe---EEEEeCCCCCCCcccc---eecccccchhhhhhhhhhheEeCCCCEEECcc
Confidence 799999999999999999987 666 9999998643221111 1111000 0111111111100
Q ss_pred C------CC-----CCChhh-HhhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCc
Q 013914 73 G------GE-----RLLPEW-YKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTV 126 (434)
Q Consensus 73 ~------~~-----~~~~~~-~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~ 126 (434)
. .+ ..+.+. +++.+..+..+..|..++.+ .+++.+|++++++.+|-|.|..+
T Consensus 75 ~~~~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~--~v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 75 YRRKLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDAD--GVDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred hhhhcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCC--EEEECCCCEEEeeEEEECCCCCC
Confidence 0 00 011111 22224446667788888543 46668888999999999999765
No 222
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.42 E-value=9.6e-07 Score=85.82 Aligned_cols=54 Identities=24% Similarity=0.214 Sum_probs=40.7
Q ss_pred cCCcEEeCCCCCCCCCcEEEeccccc-ccccccCccee-cccHHHHHHHHHHHHHHHhc
Q 013914 275 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRR-VEHVDHARKSAEQAVKTIMA 331 (434)
Q Consensus 275 ~~g~i~vd~~~~t~~~~iya~GD~~~-~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~ 331 (434)
..|+|.||...||+.||+||+|.|+. .. .+..+. -.....+.-.|+.|++++..
T Consensus 330 t~GGi~vd~~~~t~i~gLYAaGE~a~~g~---hG~nrl~gnsl~~~lvfGr~Ag~~a~~ 385 (433)
T PRK06175 330 FMGGIKVDLNSKTSMKNLYAFGEVSCTGV---HGANRLASNSLLEGLVFSKRGAEKINS 385 (433)
T ss_pred ecCCEEECCCccccCCCeEecccccccCC---CccccchhHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999974 22 222221 13557778889999998864
No 223
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.41 E-value=6.5e-07 Score=83.76 Aligned_cols=113 Identities=19% Similarity=0.215 Sum_probs=62.3
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC-CCCCCCCCccC-----ccccCCC------------CCCC------
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-AVAPYERPALS-----KAYLFPE------------GTAR------ 62 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~-~~~~~~~~~~~-----~~~~~~~------------~~~~------ 62 (434)
||+|||||+||..||+.+++.|.+ |+|+..+ +......|..+ ++.+..+ +...
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~---V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~l 77 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAK---VLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRML 77 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT-----EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCC---EEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhcc
Confidence 799999999999999999999998 9999433 22211111111 1110000 0000
Q ss_pred -----CCCcccccCCCCCCCCh----hhHhh-cCcEEEcCCeeEEEECCCCE---EEccCCcEEEcceEEEecCC
Q 013914 63 -----LPGFHVCVGSGGERLLP----EWYKE-KGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGS 124 (434)
Q Consensus 63 -----~~~~~~~~~~~~~~~~~----~~~~~-~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~lvlAtG~ 124 (434)
.+....... .+...+. +.++. .+++++.+ +|..+..++.. |.+.+|..+.+|.+|+|||.
T Consensus 78 N~skGpav~a~r~q-vDr~~y~~~~~~~l~~~~nl~i~~~-~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 78 NRSKGPAVHALRAQ-VDRDKYSRAMREKLESHPNLTIIQG-EVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp STTS-GGCTEEEEE-E-HHHHHHHHHHHHHTSTTEEEEES--EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred cccCCCCccchHhh-ccHHHHHHHHHHHHhcCCCeEEEEc-ccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 000000000 0001111 22223 58999875 89999887765 56788999999999999998
No 224
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.41 E-value=1.9e-06 Score=82.27 Aligned_cols=56 Identities=20% Similarity=0.204 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
...+...+....++...+++++++|++|..+..+ ..+.+.+|.++.+|.||+++..
T Consensus 211 ~gG~~~l~~al~~~l~~~i~~~~~V~~i~~~~~~--~~~~~~~g~~~~~D~VI~t~p~ 266 (444)
T COG1232 211 RGGLQSLIEALAEKLEAKIRTGTEVTKIDKKGAG--KTIVDVGGEKITADGVISTAPL 266 (444)
T ss_pred CccHHHHHHHHHHHhhhceeecceeeEEEEcCCc--cEEEEcCCceEEcceEEEcCCH
Confidence 3334444444444444459999999999984333 5778888989999999998874
No 225
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.40 E-value=3.4e-07 Score=86.88 Aligned_cols=34 Identities=26% Similarity=0.472 Sum_probs=30.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
+||+|||||++|+++|..|+++|++ |+|||+.+.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~---v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGID---VTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCE---EEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccc---cccchhccc
Confidence 6999999999999999999999998 999999876
No 226
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.40 E-value=7.3e-07 Score=85.68 Aligned_cols=118 Identities=19% Similarity=0.248 Sum_probs=69.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcC-CCCCcEEEEeCCCCCCCC-----CC-ccCc---------cccCCC--CCCCCCCccc
Q 013914 7 KYVILGGGVSAGYAAREFAKQG-VKPGELAIISKEAVAPYE-----RP-ALSK---------AYLFPE--GTARLPGFHV 68 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g-~~~~~V~vie~~~~~~~~-----~~-~~~~---------~~~~~~--~~~~~~~~~~ 68 (434)
||+|||||++|+++|..|+++| ++ |+|+|+.+..... +. .++. +++... .......+..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~---v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~ 77 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIK---IALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHV 77 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCce---EEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEE
Confidence 7999999999999999999999 87 9999998653211 00 0000 000000 0000000000
Q ss_pred c---------c-----CCCC----------CCCChhhHhh-cCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEe
Q 013914 69 C---------V-----GSGG----------ERLLPEWYKE-KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIA 121 (434)
Q Consensus 69 ~---------~-----~~~~----------~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlA 121 (434)
. . +... ...+.+.+.. .|++++.++.++++..+.. ++.+.++.++.+|.+|.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~A 157 (382)
T TIGR01984 78 SDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAA 157 (382)
T ss_pred EcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEe
Confidence 0 0 0000 0011112233 3899999999999876554 355667778999999999
Q ss_pred cCCCcc
Q 013914 122 TGSTVL 127 (434)
Q Consensus 122 tG~~~~ 127 (434)
.|....
T Consensus 158 dG~~S~ 163 (382)
T TIGR01984 158 DGANSK 163 (382)
T ss_pred cCCChH
Confidence 997643
No 227
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.40 E-value=8e-06 Score=82.85 Aligned_cols=57 Identities=19% Similarity=0.267 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEccc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVG 260 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~---~~g~--~~~~D~vi~a~G 260 (434)
...+...+.+.+++.||+++.++.+.++..+++|++.++.. .+|+ .+.++.||+|||
T Consensus 165 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 226 (617)
T PTZ00139 165 GHAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATG 226 (617)
T ss_pred HHHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCC
Confidence 45777888888888999999999999987645778887764 3564 578999999998
No 228
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.40 E-value=2.4e-06 Score=83.79 Aligned_cols=101 Identities=22% Similarity=0.361 Sum_probs=72.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCccC------Ccc----CC--HHHHHHHHHHHHhcCcEEEcCCeEE
Q 013914 164 GKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCM------PRL----FT--ADIAAFYEGYYANKGIKIIKGTVAV 229 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g--~~v~lv~~~~~~~------~~~----~~--~~~~~~~~~~l~~~GV~~~~~~~v~ 229 (434)
++++|||+|+.|+.+|..|++.+ .+|+++++.+.+. +.. ++ .++.....+.+++.||+++.++.|.
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 80 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV 80 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence 37999999999999999999875 4899999887631 110 11 1223334566788999999999999
Q ss_pred EEEecCCCcEEEEEe-CCCcEEE--CCEEEEcccCccChh
Q 013914 230 GFTTNADGEVKEVKL-KDGRTLE--ADIVVVGVGGRPLIS 266 (434)
Q Consensus 230 ~i~~~~~g~v~~v~~-~~g~~~~--~D~vi~a~G~~p~~~ 266 (434)
+++. +++...+.. .++++++ +|.+|+|||.+|+..
T Consensus 81 ~id~--~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 118 (444)
T PRK09564 81 KVDA--KNKTITVKNLKTGSIFNDTYDKLMIATGARPIIP 118 (444)
T ss_pred EEEC--CCCEEEEEECCCCCEEEecCCEEEECCCCCCCCC
Confidence 9986 333333332 2355666 999999999988654
No 229
>PRK06996 hypothetical protein; Provisional
Probab=98.39 E-value=9.1e-07 Score=85.40 Aligned_cols=123 Identities=19% Similarity=0.168 Sum_probs=69.9
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCC-CCCcEEEEeCCCCCCCC---CCc-c---------CccccCCCCCCCCCCc
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKEAVAPYE---RPA-L---------SKAYLFPEGTARLPGF 66 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~-~~~~V~vie~~~~~~~~---~~~-~---------~~~~~~~~~~~~~~~~ 66 (434)
|..+.+||+||||||+|+++|..|++.|. +..+|+|+|+.+..... +.. + .-+.+.. ....+...
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~-~~~~~~~~ 85 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPA-DATPIEHI 85 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchh-cCCcccEE
Confidence 44567899999999999999999999873 21239999997532110 000 0 0000000 00000000
Q ss_pred ccc--------------cCC----------CCCCCChhhHhhcCcEEEcCCeeEEEECCCCEE--EccCC---cEEEcce
Q 013914 67 HVC--------------VGS----------GGERLLPEWYKEKGIELILSTEIVRADIASKTL--LSATG---LIFKYQI 117 (434)
Q Consensus 67 ~~~--------------~~~----------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v--~~~~~---~~~~~d~ 117 (434)
... ... .....+.+.+...++++..++.++.+..+...+ .+.++ +++++|.
T Consensus 86 ~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~l 165 (398)
T PRK06996 86 HVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARI 165 (398)
T ss_pred EEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeE
Confidence 000 000 001112233445688999999998886665543 44433 5799999
Q ss_pred EEEecCC
Q 013914 118 LVIATGS 124 (434)
Q Consensus 118 lvlAtG~ 124 (434)
||-|.|.
T Consensus 166 vIgADG~ 172 (398)
T PRK06996 166 AVQAEGG 172 (398)
T ss_pred EEECCCC
Confidence 9999995
No 230
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.38 E-value=4.6e-07 Score=76.47 Aligned_cols=35 Identities=31% Similarity=0.480 Sum_probs=30.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.+||+||||||+||+||++|++.|++ |++||++..
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~k---V~v~E~~~~ 51 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLK---VAVIERKLS 51 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS----EEEEESSSS
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCe---EEEEecCCC
Confidence 58999999999999999999999998 999999864
No 231
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.38 E-value=7.8e-06 Score=82.76 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGG 261 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~---~~g~--~~~~D~vi~a~G~ 261 (434)
...+...+.+.+++.||+++.++.+.++..+++|++.++.. .+|+ .+.++.||+|||-
T Consensus 148 G~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 210 (598)
T PRK09078 148 GHAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGG 210 (598)
T ss_pred HHHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 45677788888888999999999999988744577888764 3564 6789999999993
No 232
>PLN02661 Putative thiazole synthesis
Probab=98.37 E-value=1.5e-06 Score=80.12 Aligned_cols=36 Identities=33% Similarity=0.437 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCCCcEEEEeCCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKEAVA 43 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~-g~~~~~V~vie~~~~~ 43 (434)
.+||+|||||++|++||+.|++. |++ |+|||++...
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~k---V~viEk~~~~ 128 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVK---VAIIEQSVSP 128 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCe---EEEEecCccc
Confidence 58999999999999999999986 665 9999998653
No 233
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.37 E-value=6.7e-06 Score=80.44 Aligned_cols=59 Identities=20% Similarity=0.259 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHH-hcCcEEEcCCeEEEEEecCCCcEEEEE---eCCCc--EEECCEEEEcccCcc
Q 013914 204 TADIAAFYEGYYA-NKGIKIIKGTVAVGFTTNADGEVKEVK---LKDGR--TLEADIVVVGVGGRP 263 (434)
Q Consensus 204 ~~~~~~~~~~~l~-~~GV~~~~~~~v~~i~~~~~g~v~~v~---~~~g~--~~~~D~vi~a~G~~p 263 (434)
...+.+.+.+.+. ..|++++++++|..+...+++.. .+. +.+++ ++++|.||+|.|...
T Consensus 183 ~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w-~v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 183 FGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGW-EVTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred HHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCE-EEEEEecCCCceEEEEcCEEEECCCcch
Confidence 3456677777775 45999999999999987423332 333 34453 689999999999654
No 234
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.37 E-value=1.8e-06 Score=84.80 Aligned_cols=99 Identities=16% Similarity=0.240 Sum_probs=72.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||++|+.+|..+++.|.+ |+++++.+.... ... +.+ .....+.+++
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~---Vtli~~~~~ll~------------~~d---~e~--------~~~l~~~L~~ 223 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTK---VTIVEMAPQLLP------------GED---EDI--------AHILREKLEN 223 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCcCc------------ccc---HHH--------HHHHHHHHHH
Confidence 36899999999999999999998876 999998754210 000 000 1234556778
Q ss_pred cCcEEEcCCeeEEEECCCCEEEcc-CC--cEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKTLLSA-TG--LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~-~~--~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.+++.+...+.+. ++ .++.+|.+++|+|.+|+..
T Consensus 224 ~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~ 271 (458)
T PRK06912 224 DGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQ 271 (458)
T ss_pred CCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCC
Confidence 899999999999998766554442 33 3689999999999998754
No 235
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.36 E-value=3.3e-05 Score=65.08 Aligned_cols=169 Identities=18% Similarity=0.181 Sum_probs=105.0
Q ss_pred hCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc------C------------------------------
Q 013914 160 AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------F------------------------------ 203 (434)
Q Consensus 160 ~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~------~------------------------------ 203 (434)
++....|+|+|+|++|+.+|..|++.|.+|.++++.-.+...+ |
T Consensus 27 ~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ 106 (262)
T COG1635 27 DYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVA 106 (262)
T ss_pred hhhhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEe
Confidence 3345789999999999999999999999999999875543221 1
Q ss_pred -CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-----------CCcEEECCEEEEcccCccChh-hh-h
Q 013914 204 -TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-----------DGRTLEADIVVVGVGGRPLIS-LF-K 269 (434)
Q Consensus 204 -~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~-----------~g~~~~~D~vi~a~G~~p~~~-~~-~ 269 (434)
..++...+....-+.|.+++....|+.+...++.++.++.++ |--.++++.||-|||.....- ++ +
T Consensus 107 ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~k 186 (262)
T COG1635 107 DSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAK 186 (262)
T ss_pred cHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHH
Confidence 112344444455567899999999999876344367776653 224788999999999765432 22 1
Q ss_pred cc----ccc-cCCc--------EEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhcc
Q 013914 270 GQ----VAE-NKGG--------IETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 270 ~~----~~~-~~g~--------i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 332 (434)
.. ... ..+. ..|+.+.+ -+||+|++|=++.-.. |.++--+...-=...|+.||+.++..
T Consensus 187 r~~~l~~~~~Ge~~mw~e~~E~lvV~~T~e-V~pgL~vaGMa~~av~---G~pRMGPiFGgMllSGkkaAe~i~e~ 258 (262)
T COG1635 187 RIPELGIEVPGEKSMWAERGEDLVVENTGE-VYPGLYVAGMAVNAVH---GLPRMGPIFGGMLLSGKKAAEEILEK 258 (262)
T ss_pred hccccccccCCCcchhhhHHHHHHHhcccc-ccCCeEeehhhHHhhc---CCcccCchhhhhhhchHHHHHHHHHH
Confidence 11 111 1111 22333333 3899999996554221 11111122222235788888777654
No 236
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.36 E-value=1.6e-06 Score=87.47 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
..+||||||||.||++||..+++.|. ..+|+|+||...
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~-g~~V~vleK~~~ 39 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDP-SLDVAVVAKTHP 39 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcC-CCcEEEEeccCC
Confidence 36899999999999999999998752 123999999865
No 237
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.35 E-value=1.8e-06 Score=84.42 Aligned_cols=45 Identities=13% Similarity=0.228 Sum_probs=35.0
Q ss_pred CcEEEcCCeeEEEECC---------CCEEEccCCcEEEcceEEEecCCCccccc
Q 013914 86 GIELILSTEIVRADIA---------SKTLLSATGLIFKYQILVIATGSTVLRLT 130 (434)
Q Consensus 86 ~v~~~~~~~v~~i~~~---------~~~v~~~~~~~~~~d~lvlAtG~~~~~~~ 130 (434)
+++++.++++.+++.. .-++.+.+|+++++|.||.|.|.......
T Consensus 134 ~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~ 187 (437)
T TIGR01989 134 NVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVRK 187 (437)
T ss_pred CeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhHH
Confidence 4899999999998642 22566778889999999999998654443
No 238
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.35 E-value=2.2e-05 Score=70.60 Aligned_cols=64 Identities=19% Similarity=0.187 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh
Q 013914 203 FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF 268 (434)
Q Consensus 203 ~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~ 268 (434)
....-..+++++...-+-++.+++.|..+..-++| ..+.-.+|++..+|.||+|+--.....++
T Consensus 215 V~ggS~~yvq~laa~~~~~i~t~~~V~~l~rlPdG--v~l~~~~G~s~rFD~vViAth~dqAl~mL 278 (447)
T COG2907 215 VAGGSRAYVQRLAADIRGRIETRTPVCRLRRLPDG--VVLVNADGESRRFDAVVIATHPDQALALL 278 (447)
T ss_pred cccchHHHHHHHhccccceeecCCceeeeeeCCCc--eEEecCCCCccccceeeeecChHHHHHhc
Confidence 34455667777666666679999999999987888 45666789888999999998854333333
No 239
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.35 E-value=2.1e-06 Score=82.32 Aligned_cols=99 Identities=15% Similarity=0.270 Sum_probs=74.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... . .. ++.. ......+.+++
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~---Vtlv~~~~~~l-~------~~--------~~~~-------~~~~l~~~l~~ 195 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKA---VTLVDNAASLL-A------SL--------MPPE-------VSSRLQHRLTE 195 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCe---EEEEecCCccc-c------hh--------CCHH-------HHHHHHHHHHh
Confidence 46899999999999999999998876 99999875421 0 00 0000 01234566778
Q ss_pred cCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCccc
Q 013914 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLR 128 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~ 128 (434)
.|++++.++.+.++..+.. .+.+.++.++.+|.+|+|+|..|+.
T Consensus 196 ~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 196 MGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNT 241 (377)
T ss_pred CCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcch
Confidence 8999999999999987654 3566788899999999999998863
No 240
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.34 E-value=1.9e-06 Score=86.99 Aligned_cols=38 Identities=26% Similarity=0.347 Sum_probs=33.4
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
||...+||||||+|.||++||..+++. .+ |+|+||...
T Consensus 1 ~~~~~~DVlVIG~G~AGl~AAl~aa~~-~~---VilleK~~~ 38 (583)
T PRK08205 1 MQQHRYDVVIVGAGGAGMRAAIEAGPR-AR---TAVLTKLYP 38 (583)
T ss_pred CcceeccEEEECccHHHHHHHHHHHhC-CC---EEEEeCCCC
Confidence 777779999999999999999999975 55 999999754
No 241
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.34 E-value=2.1e-05 Score=77.49 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC--CC--cEEEEEeCCC---cEEECCEEEEcccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNA--DG--EVKEVKLKDG---RTLEADIVVVGVGG 261 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~--~g--~v~~v~~~~g---~~~~~D~vi~a~G~ 261 (434)
..-+.+.+.+.+++.|++++++++|++|..++ ++ ++.++.+.+| +++.+|.||+|++.
T Consensus 218 ~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~ 282 (474)
T TIGR02732 218 DKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDV 282 (474)
T ss_pred chhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCCh
Confidence 44456778888999999999999999998643 23 2666667554 46899999999994
No 242
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.34 E-value=2.3e-05 Score=77.12 Aligned_cols=58 Identities=29% Similarity=0.473 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEE---eCCC--cEEECCEEEEcccCc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK---LKDG--RTLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~---~~~g--~~~~~D~vi~a~G~~ 262 (434)
+..+.+.+.+.+++.|++++++++|++++..+++.+ .+. +.+| .++.+|.||+|+|..
T Consensus 177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~ 239 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTRFVFVGAGGG 239 (483)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEECCEEEECCCcc
Confidence 467788888888999999999999999987434332 233 2334 268999999999954
No 243
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.33 E-value=8.7e-06 Score=82.16 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGG 261 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~---~~g~--~~~~D~vi~a~G~ 261 (434)
...+...+.+..++.||+++.++.+.++..+++|++.++.. .+|+ .+.++.||+|||-
T Consensus 142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 204 (588)
T PRK08958 142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGG 204 (588)
T ss_pred HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence 45677777777788899999999999998755788888764 3564 5779999999993
No 244
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.32 E-value=2.3e-06 Score=82.46 Aligned_cols=34 Identities=21% Similarity=0.500 Sum_probs=31.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
+||+||||||||++||..|++.|++ |+|+|+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~---V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQ---TFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCc---EEEEecCCC
Confidence 5899999999999999999999997 999999753
No 245
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.31 E-value=2e-05 Score=79.66 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGG 261 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~---~~g~--~~~~D~vi~a~G~ 261 (434)
...+.+.+.+...+.|++++.++.+.++..+++|++.++.. .+|+ .+.++.||+|+|-
T Consensus 147 G~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 209 (591)
T PRK07057 147 GHALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGG 209 (591)
T ss_pred hHHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCC
Confidence 45677777777888999999999999988645677877765 3453 5789999999994
No 246
>PRK10262 thioredoxin reductase; Provisional
Probab=98.31 E-value=2.4e-05 Score=73.27 Aligned_cols=100 Identities=13% Similarity=0.120 Sum_probs=71.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC---cc--------CC----ccCCHHHHHHHHHHHHhcCcEEEcCC
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP---WC--------MP----RLFTADIAAFYEGYYANKGIKIIKGT 226 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~---~~--------~~----~~~~~~~~~~~~~~l~~~GV~~~~~~ 226 (434)
..++++|||+|+.|+.+|..+.+.|.++++++... .+ ++ ....+.+.+.+.+..+..++++..+
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 83 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD- 83 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee-
Confidence 46799999999999999999999999998886321 10 01 1123455777788888888888776
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013914 227 VAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 227 ~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
.+..++.. ++ ...+..+++ ++.+|.||+|+|..|+.
T Consensus 84 ~v~~v~~~-~~-~~~v~~~~~-~~~~d~vilAtG~~~~~ 119 (321)
T PRK10262 84 HINKVDLQ-NR-PFRLTGDSG-EYTCDALIIATGASARY 119 (321)
T ss_pred EEEEEEec-CC-eEEEEecCC-EEEECEEEECCCCCCCC
Confidence 46677652 22 234444444 78999999999998764
No 247
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.30 E-value=8.3e-06 Score=76.47 Aligned_cols=95 Identities=25% Similarity=0.300 Sum_probs=69.5
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEc-cCCccCCc------------------------------------------
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVY-PEPWCMPR------------------------------------------ 201 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~-~~~~~~~~------------------------------------------ 201 (434)
.|+|||+|..|+|+|..+++.|.+|.++. ..+.+..-
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 37999999999999999999999999993 32222100
Q ss_pred ----------cCCH-HHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 202 ----------LFTA-DIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 202 ----------~~~~-~~~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
..|. .+.+.+++.+++ .+++++ ..+|+++.. +++++.+|.+.+|+++.+|.||+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 0111 235566667766 678887 457999987 578999999999999999999999998
No 248
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.29 E-value=3.1e-06 Score=83.62 Aligned_cols=99 Identities=17% Similarity=0.283 Sum_probs=71.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||++|+.+|..|++.|.+ |+++++.+... +. ....+ .....+.+++
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~---Vtli~~~~~il---~~---------~~~~~-----------~~~l~~~l~~ 233 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVE---VTVVEAADRIL---PT---------EDAEL-----------SKEVARLLKK 233 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCe---EEEEEecCccC---Cc---------CCHHH-----------HHHHHHHHHh
Confidence 46899999999999999999998876 99999875421 00 00000 1233456778
Q ss_pred cCcEEEcCCeeEEEEC--CCCE--EEccCC--cEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADI--ASKT--LLSATG--LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~--~~~~--v~~~~~--~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+..++. +.+. +...++ .++.+|.+++|+|.+|+..
T Consensus 234 ~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 284 (472)
T PRK05976 234 LGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTE 284 (472)
T ss_pred cCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCC
Confidence 8999999999999874 3333 223455 3699999999999998754
No 249
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.29 E-value=3e-06 Score=83.57 Aligned_cols=99 Identities=16% Similarity=0.247 Sum_probs=73.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... +.. . +.. .....+.+++
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l---~~~---------~---~~~--------~~~l~~~l~~ 225 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAE---VTIVEALPRIL---PGE---------D---KEI--------SKLAERALKK 225 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCCcC---CcC---------C---HHH--------HHHHHHHHHH
Confidence 36899999999999999999998876 99999975421 000 0 000 1234566778
Q ss_pred cCcEEEcCCeeEEEECCCCEE--EccCC---cEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKTL--LSATG---LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v--~~~~~---~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.+++.+.+.+ .+.++ +++.+|.+|+|+|.+|+..
T Consensus 226 ~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~ 275 (462)
T PRK06416 226 RGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTE 275 (462)
T ss_pred cCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCC
Confidence 899999999999998765443 33444 5799999999999998754
No 250
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.29 E-value=4.1e-06 Score=80.79 Aligned_cols=100 Identities=19% Similarity=0.254 Sum_probs=76.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+-.|..+++.|.+ |+|+|+.+... |.+... ........+++
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~---VTiie~~~~iL-------------------p~~D~e----i~~~~~~~l~~ 226 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSK---VTVVERGDRIL-------------------PGEDPE----ISKELTKQLEK 226 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCCC-------------------CcCCHH----HHHHHHHHHHh
Confidence 46799999999999999999999987 99999987532 111100 01344556667
Q ss_pred cCcEEEcCCeeEEEECCCC--EEEccCCc--EEEcceEEEecCCCccccc
Q 013914 85 KGIELILSTEIVRADIASK--TLLSATGL--IFKYQILVIATGSTVLRLT 130 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~--~~~~d~lvlAtG~~~~~~~ 130 (434)
.++.++.++.+..+..... .+.++++. ++.+|++++|+|-+|+...
T Consensus 227 ~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~ 276 (454)
T COG1249 227 GGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDG 276 (454)
T ss_pred CCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCC
Confidence 7899999999999877664 45566665 6889999999999998654
No 251
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.28 E-value=4.4e-06 Score=79.74 Aligned_cols=97 Identities=19% Similarity=0.302 Sum_probs=73.2
Q ss_pred cEEEECCCHHHHHHHHHHHhC---CCeEEEEccCCccCCc-cC---------CHHHHHHHHHHHHhcCcEEEcCCeEEEE
Q 013914 165 KAVVVGGGYIGLELSAALKIN---NIDVSMVYPEPWCMPR-LF---------TADIAAFYEGYYANKGIKIIKGTVAVGF 231 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~---g~~v~lv~~~~~~~~~-~~---------~~~~~~~~~~~l~~~GV~~~~~~~v~~i 231 (434)
+++|||+|+.|+.+|..+.+. +.+|+++++.+.+.-. .+ ..++...+.+.+++.||+++.+ +|.++
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i 79 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI 79 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence 589999999999999998643 6899999987654211 11 1233344566778889999876 68888
Q ss_pred EecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013914 232 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 232 ~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~ 266 (434)
+. +++ .|.+.+|+++++|.+|+|||.+|+..
T Consensus 80 d~--~~~--~V~~~~g~~~~yD~LviAtG~~~~~~ 110 (364)
T TIGR03169 80 DP--DRR--KVLLANRPPLSYDVLSLDVGSTTPLS 110 (364)
T ss_pred ec--ccC--EEEECCCCcccccEEEEccCCCCCCC
Confidence 76 332 57788898999999999999888654
No 252
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.28 E-value=6e-05 Score=72.68 Aligned_cols=97 Identities=22% Similarity=0.258 Sum_probs=73.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc-----------------C-----------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-----------------F----------------------- 203 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~-----------------~----------------------- 203 (434)
-.|+|||+|+.|.-+|..|++.|.+|.++++.+.+.... +
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~ 83 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIE 83 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEe
Confidence 368999999999999999999999999999864431100 0
Q ss_pred ----------CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 204 ----------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 204 ----------~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
-..+.+++.+..++.|++++.++++..+..++++.+..+ ..++.++.++.||.|.|.
T Consensus 84 ~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~a~~vI~AdG~ 150 (396)
T COG0644 84 VPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGV-RAGDDEVRAKVVIDADGV 150 (396)
T ss_pred cCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEE-EcCCEEEEcCEEEECCCc
Confidence 113355677788899999999999999988555544333 334468899999999984
No 253
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.28 E-value=3.2e-06 Score=73.26 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=31.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.+|+|||+|+||++||..|++.|.+ |+|+||..-
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~---vtV~eKg~G 35 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGRE---VTVFEKGRG 35 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcE---EEEEEcCCC
Confidence 4799999999999999999999987 999999865
No 254
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.27 E-value=1.7e-06 Score=82.77 Aligned_cols=33 Identities=36% Similarity=0.535 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
+||+|||||++|+++|..|++.|++ |+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~---v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIK---TTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCe---EEEecCCC
Confidence 6999999999999999999999987 99999863
No 255
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.27 E-value=2.3e-05 Score=79.63 Aligned_cols=57 Identities=16% Similarity=0.258 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEccc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVG 260 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~---~~g~--~~~~D~vi~a~G 260 (434)
...+.+.+.+.+++.||+++.++.+.++..++++++.++.. .+|+ .+.++.||+|||
T Consensus 186 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATG 247 (635)
T PLN00128 186 GHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATG 247 (635)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCC
Confidence 56677788787888899999999999987644678877765 3564 578999999999
No 256
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.27 E-value=3.4e-06 Score=88.03 Aligned_cols=97 Identities=26% Similarity=0.425 Sum_probs=73.9
Q ss_pred EEEECCCHHHHHHHHHHHhC---CCeEEEEccCCccC------CccCC-----HHHHHHHHHHHHhcCcEEEcCCeEEEE
Q 013914 166 AVVVGGGYIGLELSAALKIN---NIDVSMVYPEPWCM------PRLFT-----ADIAAFYEGYYANKGIKIIKGTVAVGF 231 (434)
Q Consensus 166 v~ViG~g~~~~e~a~~l~~~---g~~v~lv~~~~~~~------~~~~~-----~~~~~~~~~~l~~~GV~~~~~~~v~~i 231 (434)
++|||+|+.|+.+|..+.+. +.+|+++++.+++. +.++. .++.....+.+++.||+++++++|+++
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 58999999999999998775 46899999887642 11111 112222356678899999999999999
Q ss_pred EecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013914 232 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 232 ~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~ 266 (434)
+. +. ..|.+.+|+++.+|.+|+|||.+|+..
T Consensus 81 d~--~~--k~V~~~~g~~~~yD~LVlATGs~p~~p 111 (785)
T TIGR02374 81 DT--DQ--KQVITDAGRTLSYDKLILATGSYPFIL 111 (785)
T ss_pred EC--CC--CEEEECCCcEeeCCEEEECCCCCcCCC
Confidence 86 33 357788898999999999999988654
No 257
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.27 E-value=1.7e-05 Score=80.15 Aligned_cols=58 Identities=14% Similarity=0.225 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHhcC----cEEEcCCeEEEEEecCCCcEEEEEeC---CCc--EEECCEEEEcccC
Q 013914 204 TADIAAFYEGYYANKG----IKIIKGTVAVGFTTNADGEVKEVKLK---DGR--TLEADIVVVGVGG 261 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~G----V~~~~~~~v~~i~~~~~g~v~~v~~~---~g~--~~~~D~vi~a~G~ 261 (434)
...+...+.+.+++.+ |+++.++.+.++..+++|++.++... +++ .+.++.||+|||-
T Consensus 132 G~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 198 (589)
T PRK08641 132 GQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGG 198 (589)
T ss_pred HHHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence 4556666666665433 88999999988876557888888763 343 4789999999993
No 258
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.27 E-value=1.8e-06 Score=83.54 Aligned_cols=56 Identities=25% Similarity=0.265 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc-----EEECCEEEEcccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR-----TLEADIVVVGVGG 261 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~-----~~~~D~vi~a~G~ 261 (434)
|..+.-.......++|-++...++|+++.. +++ +.+|+..|.. ++.++.||.|+|-
T Consensus 163 daRLv~~~a~~A~~~Ga~il~~~~v~~~~r-e~~-v~gV~~~D~~tg~~~~ira~~VVNAaGp 223 (532)
T COG0578 163 DARLVAANARDAAEHGAEILTYTRVESLRR-EGG-VWGVEVEDRETGETYEIRARAVVNAAGP 223 (532)
T ss_pred hHHHHHHHHHHHHhcccchhhcceeeeeee-cCC-EEEEEEEecCCCcEEEEEcCEEEECCCc
Confidence 556677777888999999999999999987 334 7888876542 5889999999994
No 259
>PRK14694 putative mercuric reductase; Provisional
Probab=98.26 E-value=4.4e-06 Score=82.35 Aligned_cols=98 Identities=19% Similarity=0.344 Sum_probs=72.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+..|..|++.|.+ |+++++....+.. ...+ .....+.+++
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~---Vtlv~~~~~l~~~-------------~~~~-----------~~~l~~~l~~ 230 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSR---VTVLARSRVLSQE-------------DPAV-----------GEAIEAAFRR 230 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEECCCCCCCC-------------CHHH-----------HHHHHHHHHh
Confidence 46899999999999999999999876 9999875321100 0000 1234566778
Q ss_pred cCcEEEcCCeeEEEECCCCEEEc-cCCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKTLLS-ATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~-~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+..++.+...+.+ .++.++.+|.+++|+|..|+..
T Consensus 231 ~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~ 276 (468)
T PRK14694 231 EGIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATGRTPNTE 276 (468)
T ss_pred CCCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCCCCcC
Confidence 89999999999999876654332 2344799999999999998754
No 260
>PRK07236 hypothetical protein; Provisional
Probab=98.26 E-value=8.4e-06 Score=78.43 Aligned_cols=102 Identities=25% Similarity=0.358 Sum_probs=73.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc-----cCCHHHHHHHHH-----------------------
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-----LFTADIAAFYEG----------------------- 213 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~-----~~~~~~~~~~~~----------------------- 213 (434)
...+|+|||+|+.|+.+|..|++.|.+|+++++.+..... .+.+...+.+.+
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g 84 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDG 84 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCC
Confidence 3578999999999999999999999999999988643321 012222222221
Q ss_pred --------------------HHHh--cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013914 214 --------------------YYAN--KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 214 --------------------~l~~--~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
.|.+ .+++++.++++++++.++++ ..+.+++|+++.+|+||.|-|.....
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 85 RVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDR--VTARFADGRRETADLLVGADGGRSTV 156 (386)
T ss_pred CEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCe--EEEEECCCCEEEeCEEEECCCCCchH
Confidence 1111 13568999999999874333 56888999999999999999965544
No 261
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.26 E-value=6.6e-06 Score=80.03 Aligned_cols=102 Identities=17% Similarity=0.218 Sum_probs=72.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccC----------CHHHHHHHHHHHHhcCcEEEcCCeEEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF----------TADIAAFYEGYYANKGIKIIKGTVAVGF 231 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~----------~~~~~~~~~~~l~~~GV~~~~~~~v~~i 231 (434)
..++++|||+|+.|+.+|..|...+.+|+++++.+.+.-... ..++...+...++..+++++.+ +|++|
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~V~~I 87 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRA-VVYDV 87 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEE-EEEEE
Confidence 457899999999999999999777789999998876532111 1223334556677788888765 68899
Q ss_pred EecCCCcEEEEEe--------CCCcEEECCEEEEcccCccChh
Q 013914 232 TTNADGEVKEVKL--------KDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 232 ~~~~~g~v~~v~~--------~~g~~~~~D~vi~a~G~~p~~~ 266 (434)
+. +.+...+.. .+|.++++|.+|+|+|.+|+..
T Consensus 88 d~--~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~ 128 (424)
T PTZ00318 88 DF--EEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTF 128 (424)
T ss_pred Ec--CCCEEEEecccccccccCCceEecCCEEEECCCcccCCC
Confidence 76 333222311 4567899999999999887643
No 262
>PLN02576 protoporphyrinogen oxidase
Probab=98.26 E-value=4.1e-05 Score=76.33 Aligned_cols=38 Identities=26% Similarity=0.316 Sum_probs=33.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc-CCCCCcEEEEeCCCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKEAVAP 44 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~-g~~~~~V~vie~~~~~~ 44 (434)
.++||+|||||++||+||++|.+. |.+ |+|+|+++..+
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~---v~vlEa~~rvG 49 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVN---VLVTEARDRVG 49 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCC---EEEEecCCCCC
Confidence 357999999999999999999998 886 99999997643
No 263
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.25 E-value=2.1e-06 Score=74.49 Aligned_cols=103 Identities=21% Similarity=0.338 Sum_probs=72.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC--ccCCH-----------HHH--H--HHHHHHHhcCcEEEcCCe
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--RLFTA-----------DIA--A--FYEGYYANKGIKIIKGTV 227 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~--~~~~~-----------~~~--~--~~~~~l~~~GV~~~~~~~ 227 (434)
+++|||+|+.|+.+|..|.+.+.+++++++.+.... ..+.. ... + .+.+.++..+++++.+++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 80 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK 80 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence 589999999999999999999999999977653210 00000 011 1 334445778999999999
Q ss_pred EEEEEecCCCc-------EEEEEeCCCcEEECCEEEEcccCccChhhh
Q 013914 228 AVGFTTNADGE-------VKEVKLKDGRTLEADIVVVGVGGRPLISLF 268 (434)
Q Consensus 228 v~~i~~~~~g~-------v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~ 268 (434)
+.+++.. .+. .......++.++.+|.+|+|+|..|+...+
T Consensus 81 v~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i 127 (201)
T PF07992_consen 81 VVSIDPE-SKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNI 127 (201)
T ss_dssp EEEEEES-TTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESS
T ss_pred ccccccc-ccccccCcccceeeccCCceEecCCeeeecCccccceeec
Confidence 9999873 331 112234556789999999999988775533
No 264
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.25 E-value=4.5e-06 Score=78.55 Aligned_cols=100 Identities=21% Similarity=0.359 Sum_probs=79.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCccCCcc----------CCHHHHHHHHHHHHhcC-cEEEcCCeEE
Q 013914 163 NGKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPRL----------FTADIAAFYEGYYANKG-IKIIKGTVAV 229 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g--~~v~lv~~~~~~~~~~----------~~~~~~~~~~~~l~~~G-V~~~~~~~v~ 229 (434)
.++++|+|+|+.|+.++..|.+.- .+|+++++.+..+-.. -..++...+.+.+++.+ |+++.++ |+
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~-V~ 81 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGE-VT 81 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEEE-EE
Confidence 579999999999999999999874 8899999988764221 12345566778888666 9988775 88
Q ss_pred EEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhh
Q 013914 230 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISL 267 (434)
Q Consensus 230 ~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~ 267 (434)
+|+. +. ..|.++++.++++|.+|+|+|..++..-
T Consensus 82 ~ID~--~~--k~V~~~~~~~i~YD~LVvalGs~~~~fg 115 (405)
T COG1252 82 DIDR--DA--KKVTLADLGEISYDYLVVALGSETNYFG 115 (405)
T ss_pred EEcc--cC--CEEEeCCCccccccEEEEecCCcCCcCC
Confidence 8876 44 3678888778999999999999887753
No 265
>PRK07538 hypothetical protein; Provisional
Probab=98.25 E-value=3.7e-06 Score=81.61 Aligned_cols=33 Identities=21% Similarity=0.429 Sum_probs=31.1
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
||+|||||++|+++|..|++.|++ |+|+|+.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIE---VVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCc---EEEEEcCCc
Confidence 899999999999999999999987 999999864
No 266
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.25 E-value=3.5e-06 Score=85.60 Aligned_cols=35 Identities=29% Similarity=0.491 Sum_probs=32.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.+||||||+|.||++||..+++.|.+ |+||||...
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~---V~lieK~~~ 42 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLR---VAVVCKSLF 42 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCC---EEEEeccCC
Confidence 58999999999999999999999887 999999864
No 267
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.25 E-value=1.5e-06 Score=60.45 Aligned_cols=31 Identities=32% Similarity=0.462 Sum_probs=27.6
Q ss_pred EECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013914 10 ILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 10 IIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
|||||++||++|..|++.|.+ |+|+|+++..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~---v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYR---VTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSE---EEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCc---EEEEecCccc
Confidence 899999999999999999876 9999999764
No 268
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.24 E-value=3.8e-06 Score=82.08 Aligned_cols=96 Identities=14% Similarity=0.205 Sum_probs=73.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhc
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
.+++|||||+.|+-+|..|++.|.+ |+++++.+... +. + ...+ .....+.+++.
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~---Vtli~~~~~l~---~~-----~----d~~~-----------~~~l~~~l~~~ 202 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLH---PTLIHRSDKIN---KL-----M----DADM-----------NQPILDELDKR 202 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCc---EEEEecccccc---hh-----c----CHHH-----------HHHHHHHHHhc
Confidence 6899999999999999999998876 99999875421 00 0 0000 12345667788
Q ss_pred CcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccc
Q 013914 86 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
|++++.++.+.+++. ..+.+.+++++.+|.+++|+|.+|+..
T Consensus 203 gI~i~~~~~v~~i~~--~~v~~~~g~~~~~D~vl~a~G~~pn~~ 244 (438)
T PRK13512 203 EIPYRLNEEIDAING--NEVTFKSGKVEHYDMIIEGVGTHPNSK 244 (438)
T ss_pred CCEEEECCeEEEEeC--CEEEECCCCEEEeCEEEECcCCCcChH
Confidence 999999999999864 467777788899999999999998653
No 269
>PRK07846 mycothione reductase; Reviewed
Probab=98.23 E-value=6e-06 Score=80.86 Aligned_cols=98 Identities=21% Similarity=0.279 Sum_probs=71.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... + .....+ .....+ +.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~---Vtli~~~~~ll---~---------~~d~~~-----------~~~l~~-l~~ 218 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVR---VTVVNRSGRLL---R---------HLDDDI-----------SERFTE-LAS 218 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCccc---c---------ccCHHH-----------HHHHHH-HHh
Confidence 46899999999999999999998876 99999975421 0 000000 011122 234
Q ss_pred cCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.+++++.++.+.+++.+.+ .+.+.+++++.+|.+++|+|.+|+..
T Consensus 219 ~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~ 265 (451)
T PRK07846 219 KRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGD 265 (451)
T ss_pred cCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCcc
Confidence 6799999999999986654 35556777899999999999998754
No 270
>PRK06116 glutathione reductase; Validated
Probab=98.23 E-value=5.2e-06 Score=81.52 Aligned_cols=99 Identities=17% Similarity=0.130 Sum_probs=74.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... +. + .. . ......+.+++
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l---~~-----~----~~---~--------~~~~l~~~L~~ 220 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSE---THLFVRGDAPL---RG-----F----DP---D--------IRETLVEEMEK 220 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCCc---cc-----c----CH---H--------HHHHHHHHHHH
Confidence 46899999999999999999998876 99999875321 00 0 00 0 01234566778
Q ss_pred cCcEEEcCCeeEEEECCCC---EEEccCCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASK---TLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~---~v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.+++.+.+ .+.+.+++++.+|.+++|+|.+|+..
T Consensus 221 ~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~ 268 (450)
T PRK06116 221 KGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTD 268 (450)
T ss_pred CCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCC
Confidence 8999999999999976432 35566788899999999999998754
No 271
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.23 E-value=3.6e-06 Score=80.98 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.+||+|||||++|+++|..|++.|++ |+|+|+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~---v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGID---NVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCC---EEEEECCCC
Confidence 47999999999999999999999998 999999874
No 272
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.23 E-value=8.1e-06 Score=85.36 Aligned_cols=100 Identities=25% Similarity=0.504 Sum_probs=75.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhC----CCeEEEEccCCccC------CccC----CHHHHHHHHHHHHhcCcEEEcCCeE
Q 013914 163 NGKAVVVGGGYIGLELSAALKIN----NIDVSMVYPEPWCM------PRLF----TADIAAFYEGYYANKGIKIIKGTVA 228 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~----g~~v~lv~~~~~~~------~~~~----~~~~~~~~~~~l~~~GV~~~~~~~v 228 (434)
.++++|||+|+.|+.+|..|.+. +.+|+++.+.+++. +.++ ..++.....+.+++.||+++.++.|
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V 82 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERA 82 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEE
Confidence 35899999999999999999764 47999998887642 1111 1222223355678899999999999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013914 229 VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 229 ~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~ 266 (434)
.+++. +. ..|.+.+|+++.+|.+|+|||.+|...
T Consensus 83 ~~Id~--~~--~~V~~~~G~~i~yD~LVIATGs~p~~p 116 (847)
T PRK14989 83 ITINR--QE--KVIHSSAGRTVFYDKLIMATGSYPWIP 116 (847)
T ss_pred EEEeC--CC--cEEEECCCcEEECCEEEECCCCCcCCC
Confidence 99976 33 356778898999999999999988654
No 273
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.21 E-value=5.4e-06 Score=81.23 Aligned_cols=99 Identities=19% Similarity=0.239 Sum_probs=73.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+.+|..+++.|.+ |+++++.+..... + ...+ .....+.+++
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~---Vtli~~~~~~l~~--------~----d~~~-----------~~~l~~~l~~ 219 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQ---VTLIYRGELILRG--------F----DDDM-----------RALLARNMEG 219 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEEeCCCCCcc--------c----CHHH-----------HHHHHHHHHH
Confidence 46799999999999999999998876 9999987542100 0 0000 1234456778
Q ss_pred cCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.+++.... .+.+.++.++.+|.+++|+|..|+..
T Consensus 220 ~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~ 266 (446)
T TIGR01424 220 RGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTK 266 (446)
T ss_pred CCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCCC
Confidence 8999999999999875433 45556777899999999999988753
No 274
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.21 E-value=7.9e-06 Score=80.57 Aligned_cols=99 Identities=21% Similarity=0.224 Sum_probs=74.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... +. + ... ....+.+.+++
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l---~~-----~----d~~-----------~~~~l~~~l~~ 228 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVK---VTLINTRDRLL---SF-----L----DDE-----------ISDALSYHLRD 228 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCcC---Cc-----C----CHH-----------HHHHHHHHHHH
Confidence 46899999999999999999999876 99999875421 00 0 000 01234556677
Q ss_pred cCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+..+..+.. .+.+.++.++.+|.+++|+|.+|+..
T Consensus 229 ~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 229 SGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTD 275 (461)
T ss_pred cCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCcccc
Confidence 8999999999999875444 34456777899999999999998754
No 275
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.21 E-value=5.4e-06 Score=80.15 Aligned_cols=34 Identities=35% Similarity=0.352 Sum_probs=31.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.+|+|||||++|+++|..|++.|++ |+|+|+.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~---V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWA---VTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCc
Confidence 6899999999999999999999987 999999865
No 276
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.21 E-value=6.1e-06 Score=81.36 Aligned_cols=99 Identities=19% Similarity=0.264 Sum_probs=72.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... + .... .+ .....+.+++
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l---~---------~~d~---~~--------~~~l~~~l~~ 219 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSE---VTILQRSDRLL---P---------REEP---EI--------SAAVEEALAE 219 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCCcCC---C---------ccCH---HH--------HHHHHHHHHH
Confidence 36899999999999999999999876 99999875421 0 0000 00 1234556777
Q ss_pred cCcEEEcCCeeEEEECCCC--EEEcc---CCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASK--TLLSA---TGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~---~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+..+..+.. .+.+. ++.++.+|.+++|+|.+|+..
T Consensus 220 ~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~ 269 (463)
T TIGR02053 220 EGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTD 269 (463)
T ss_pred cCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCC
Confidence 8999999988999876543 23332 235799999999999998765
No 277
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.21 E-value=2.3e-05 Score=72.35 Aligned_cols=97 Identities=20% Similarity=0.227 Sum_probs=73.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc-------------------------------------------
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------------- 201 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~------------------------------------------- 201 (434)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.....
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE 81 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence 5899999999999999999999999999987542110
Q ss_pred ------cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC-CcEEECCEEEEcccCcc
Q 013914 202 ------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD-GRTLEADIVVVGVGGRP 263 (434)
Q Consensus 202 ------~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~-g~~~~~D~vi~a~G~~p 263 (434)
.....+.+.+.+.+++.|++++.+++++++..++++ ..+.+.+ +.++++|.||.|+|...
T Consensus 82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDR--VVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCE--EEEEEcCccEEEEeCEEEECCCcch
Confidence 012245667777888899999999999998763333 2344443 45799999999999754
No 278
>PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A ....
Probab=98.21 E-value=1.9e-05 Score=57.56 Aligned_cols=79 Identities=20% Similarity=0.430 Sum_probs=63.1
Q ss_pred eeEEeccCceeEEeecCC--CCEEEEcCCCcccCCCcEEEEEEeCCEEEEEEEecCCHHHHHHHHHHHHcCCCCCChhhh
Q 013914 346 YFYSRAFDLSWQFYGDNV--GDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVL 423 (434)
Q Consensus 346 ~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~~~~~~~~~~~~i~~~~~~~~~~~l 423 (434)
+|||.+++..++.+|... .+.+..++.. ...|..+++++|+++|+..++ .+.++..+..+|+.+..+ +.+.|
T Consensus 1 ~FWSdQ~~~~iq~~G~~~~~~~~v~rg~~~----~~~~~~~y~~~g~lva~~~vn-~~~~~~~~rrli~~~~~~-~~~~l 74 (85)
T PF14759_consen 1 WFWSDQYGVRIQIAGLPGGADEVVVRGDPE----SGKFVAFYLRDGRLVAAVSVN-RPRDLRAARRLIAAGARV-DPARL 74 (85)
T ss_dssp EEEEEETTEEEEEEE-STTSSEEEEEEETT----TTEEEEEEEETTEEEEEEEES--HHHHHHHHHHHHTT-B---HHHH
T ss_pred CeecccCCCeEEEEECCCCCCEEEEEccCC----CCcEEEEEEcCCEEEEEEecC-CHHHHHHHHHHHHCCCCc-CHHHh
Confidence 689999999999999765 3456666644 578898999999999999997 578899999999999988 68899
Q ss_pred hccCCCc
Q 013914 424 KNEGLSF 430 (434)
Q Consensus 424 ~~~~~~~ 430 (434)
.++.++.
T Consensus 75 ~d~~~~L 81 (85)
T PF14759_consen 75 ADPSVDL 81 (85)
T ss_dssp HSTTSHH
T ss_pred cCCCCCh
Confidence 9998765
No 279
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.20 E-value=5.3e-06 Score=87.60 Aligned_cols=93 Identities=19% Similarity=0.119 Sum_probs=73.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC-------c-cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------R-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~-------~-~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~ 233 (434)
.+++|+|||+|+.|+.+|..|++.|++|+++++.+.+.. . -++.++.+...+.+++.||+|++++.+.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG---- 380 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG---- 380 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec----
Confidence 479999999999999999999999999999998765422 1 1467777777888999999999887541
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccCc-cC
Q 013914 234 NADGEVKEVKLKDGRTLEADIVVVGVGGR-PL 264 (434)
Q Consensus 234 ~~~g~v~~v~~~~g~~~~~D~vi~a~G~~-p~ 264 (434)
..+++++.....+|.|++|+|.. |.
T Consensus 381 ------~dit~~~l~~~~yDAV~LAtGA~~pr 406 (944)
T PRK12779 381 ------KTATLEDLKAAGFWKIFVGTGAGLPT 406 (944)
T ss_pred ------cEEeHHHhccccCCEEEEeCCCCCCC
Confidence 13445555456799999999974 54
No 280
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.20 E-value=5e-06 Score=78.83 Aligned_cols=101 Identities=14% Similarity=0.084 Sum_probs=68.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc--------cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~ 233 (434)
.+++++|||+|+.|+++|..|.+.|.+|+++++.+.+... .++.+......+.+.+.|++++.++.+..+..
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~~~ 96 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCGEP 96 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeeccc
Confidence 4689999999999999999999999999999988765421 12333344445566777999999988765532
Q ss_pred --cCCCcEEEEEe--CCCcEEECCEEEEcccCc
Q 013914 234 --NADGEVKEVKL--KDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 234 --~~~g~v~~v~~--~~g~~~~~D~vi~a~G~~ 262 (434)
..++....... .++..+.+|.+|+|+|..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~ 129 (352)
T PRK12770 97 LHEEEGDEFVERIVSLEELVKKYDAVLIATGTW 129 (352)
T ss_pred cccccccccccccCCHHHHHhhCCEEEEEeCCC
Confidence 01111111111 112247899999999973
No 281
>PLN02487 zeta-carotene desaturase
Probab=98.20 E-value=1.7e-05 Score=79.16 Aligned_cols=60 Identities=15% Similarity=0.147 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC--CC--cEEEEEe---CCCcEEECCEEEEcccCc
Q 013914 203 FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA--DG--EVKEVKL---KDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 203 ~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~--~g--~v~~v~~---~~g~~~~~D~vi~a~G~~ 262 (434)
+...+.+.+.+.++++|++++++++|.+|..+. ++ ++.++.+ .+++++.+|.||+|++..
T Consensus 293 ~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 293 PDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP 359 (569)
T ss_pred chHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence 455688899999999999999999999998742 23 3677777 334568999999999953
No 282
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.20 E-value=6.4e-06 Score=79.38 Aligned_cols=35 Identities=11% Similarity=0.263 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
++||+|||||++|+++|..|++.|++ |+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~---v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGID---SVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCC---EEEEEcCCc
Confidence 57999999999999999999999987 999999864
No 283
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.20 E-value=8.7e-06 Score=82.85 Aligned_cols=37 Identities=14% Similarity=0.218 Sum_probs=33.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHc-CCCCCcEEEEeCCCC
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKEAV 42 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~-g~~~~~V~vie~~~~ 42 (434)
++++||+||||||+||++|..|++. |.+ |+|||+.+.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~---v~IiE~~~~ 67 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDIT---TRIVERKPG 67 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCc---EEEEEcCCC
Confidence 4578999999999999999999995 887 999999864
No 284
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.20 E-value=1e-05 Score=82.40 Aligned_cols=35 Identities=17% Similarity=0.430 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.+||||||+|.||++||..+++.|.+ |+||||...
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~---VilieK~~~ 69 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYN---VKVFCYQDS 69 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCc---EEEEecCCC
Confidence 57999999999999999999999887 999998643
No 285
>PLN02661 Putative thiazole synthesis
Probab=98.20 E-value=0.00014 Score=67.21 Aligned_cols=173 Identities=15% Similarity=0.116 Sum_probs=101.7
Q ss_pred HHHHhCCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCccCCcc--------------------------CC----
Q 013914 156 EAIKAKKNGKAVVVGGGYIGLELSAALKIN-NIDVSMVYPEPWCMPRL--------------------------FT---- 204 (434)
Q Consensus 156 ~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~-g~~v~lv~~~~~~~~~~--------------------------~~---- 204 (434)
+.+.....-.++|||+|..|+-+|..+++. |.+|+++++...+.... ++
T Consensus 85 ~~l~~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dg 164 (357)
T PLN02661 85 TDMITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQEN 164 (357)
T ss_pred hhhhhcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCC
Confidence 333333456899999999999999999976 89999999865431100 01
Q ss_pred -------HHHHHHHH-HHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC------C--C------cEEECCEEEEcccCc
Q 013914 205 -------ADIAAFYE-GYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK------D--G------RTLEADIVVVGVGGR 262 (434)
Q Consensus 205 -------~~~~~~~~-~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~------~--g------~~~~~D~vi~a~G~~ 262 (434)
.++.+.+. +.+++.||+++.++.+.++.. +++++.++.+. + + ..+.++.||+|||..
T Consensus 165 y~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~-~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~ 243 (357)
T PLN02661 165 YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHD 243 (357)
T ss_pred eeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEe-cCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCC
Confidence 11112233 344457899999999999876 45677777631 1 1 268999999999965
Q ss_pred cChh-h-hhc----cccc---cCCcE--------EeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHH
Q 013914 263 PLIS-L-FKG----QVAE---NKGGI--------ETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQA 325 (434)
Q Consensus 263 p~~~-~-~~~----~~~~---~~g~i--------~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~a 325 (434)
+..- . +.. +... ..... .|+.+-+ -+|++|++|=.+.-.. |.++=-+....=...|+.|
T Consensus 244 g~~ga~~~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~e-v~pgl~~~gm~~~~~~---g~~rmgp~fg~m~~sg~k~ 319 (357)
T PLN02661 244 GPFGATGVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTRE-VVPGMIVTGMEVAEID---GSPRMGPTFGAMMISGQKA 319 (357)
T ss_pred CcchhhhhhcccccCCccCCCCccccchhhHHHHHHhccCc-ccCCEEEeccchhhhc---CCCccCchhHhHHhhhHHH
Confidence 4321 1 110 1000 00111 1222222 3899999996554221 1111112222234678888
Q ss_pred HHHHhccC
Q 013914 326 VKTIMATE 333 (434)
Q Consensus 326 a~~i~~~~ 333 (434)
|+-++..+
T Consensus 320 a~~~~~~l 327 (357)
T PLN02661 320 AHLALKAL 327 (357)
T ss_pred HHHHHHHH
Confidence 88887665
No 286
>PLN02463 lycopene beta cyclase
Probab=98.19 E-value=2e-05 Score=76.57 Aligned_cols=98 Identities=19% Similarity=0.267 Sum_probs=73.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-Ccc----------------------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-PRL---------------------------------------- 202 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~-~~~---------------------------------------- 202 (434)
-.++|||+|+.|+.+|..|++.|.+|.++++.+... +..
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y 108 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY 108 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence 379999999999999999999999999998864321 100
Q ss_pred ---CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013914 203 ---FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 203 ---~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~ 264 (434)
...++.+.+.+.+.+.|++++ ..+|++++..+++ ..|++++|+++++|.||.|+|..+.
T Consensus 109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~--~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESK--SLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe--EEEEECCCCEEEcCEEEECcCCCcC
Confidence 011233455566677899997 4688999874333 5788899989999999999997653
No 287
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.19 E-value=7.6e-06 Score=80.16 Aligned_cols=33 Identities=27% Similarity=0.404 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcC-CCCCcEEEEeCCCC
Q 013914 7 KYVILGGGVSAGYAAREFAKQG-VKPGELAIISKEAV 42 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g-~~~~~V~vie~~~~ 42 (434)
||||||+|.||++||.+++++| .+ |+||||.+.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~---V~vlEk~~~ 34 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAAN---VVLLEKMPV 34 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCcc---EEEEecCCC
Confidence 7999999999999999999998 76 999999875
No 288
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.19 E-value=1.1e-05 Score=84.29 Aligned_cols=91 Identities=21% Similarity=0.237 Sum_probs=68.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC-------cc-CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------RL-FTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~-------~~-~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~ 233 (434)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. .+ ++.+....-.+.+++.||++++++.+ .+..
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di~l 616 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DLTV 616 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EEEh
Confidence 467999999999999999999999999999998765422 11 34455566667788899999999876 2222
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013914 234 NADGEVKEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 234 ~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~ 264 (434)
.+.+...+|.||+|||..+.
T Consensus 617 -----------e~L~~~gYDaVILATGA~~~ 636 (1019)
T PRK09853 617 -----------EQLKNEGYDYVVVAIGADKN 636 (1019)
T ss_pred -----------hhheeccCCEEEECcCCCCC
Confidence 22234568999999998753
No 289
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.19 E-value=6.8e-06 Score=81.01 Aligned_cols=99 Identities=19% Similarity=0.219 Sum_probs=72.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+.+|..|++.|.+ |+|+++.+... + .....+ .....+.+++
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~---Vtlv~~~~~~l---~---------~~d~~~-----------~~~l~~~l~~ 225 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVD---VTIVEFLDRAL---P---------NEDAEV-----------SKEIAKQYKK 225 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEecCCCcC---C---------ccCHHH-----------HHHHHHHHHH
Confidence 36899999999999999999999876 99999875321 0 000000 1234566778
Q ss_pred cCcEEEcCCeeEEEECCCCE--EEcc--CC--cEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKT--LLSA--TG--LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~--~~--~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.+++.+... +.+. ++ .++++|.+++|+|.+|+..
T Consensus 226 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 276 (466)
T PRK07818 226 LGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVE 276 (466)
T ss_pred CCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCC
Confidence 89999999999999765543 3332 45 3699999999999998754
No 290
>PRK06370 mercuric reductase; Validated
Probab=98.18 E-value=6.9e-06 Score=80.94 Aligned_cols=99 Identities=17% Similarity=0.199 Sum_probs=72.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+|+|||+|+.|+.+|..|++.|.+ |+++++.+.... .... .. .....+.+++
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~---Vtli~~~~~~l~------------~~~~---~~--------~~~l~~~l~~ 224 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSE---VTVIERGPRLLP------------REDE---DV--------AAAVREILER 224 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCCCCc------------ccCH---HH--------HHHHHHHHHh
Confidence 36899999999999999999999876 999999754210 0000 00 1234556778
Q ss_pred cCcEEEcCCeeEEEECCCCE--EEc---cCCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKT--LLS---ATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~---~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.+++.++.. +.+ .++.++.+|.+|+|+|.+|+..
T Consensus 225 ~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 225 EGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTD 274 (463)
T ss_pred CCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCC
Confidence 89999999999999865442 333 2335799999999999998754
No 291
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.18 E-value=1.6e-05 Score=77.29 Aligned_cols=33 Identities=18% Similarity=0.434 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcC-CCCCcEEEEeCCCC
Q 013914 7 KYVILGGGVSAGYAAREFAKQG-VKPGELAIISKEAV 42 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g-~~~~~V~vie~~~~ 42 (434)
+|+|||||++||++|..|+++| .+ |+|+|+.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~---v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLN---VQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCC---EEEEecCCc
Confidence 7999999999999999999987 46 999999865
No 292
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.17 E-value=6.2e-06 Score=81.09 Aligned_cols=90 Identities=22% Similarity=0.271 Sum_probs=70.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------Cc-cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~-------~~-~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~ 233 (434)
.+++++|||+|+.|+++|..|.+.|.+|+++++.+.+. +. ..+.++.....+.+++.||++++++.+..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~--- 215 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR--- 215 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC---
Confidence 46899999999999999999999999999999887652 11 13667778888889999999999986521
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 234 NADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 234 ~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
.+.+.+. .+.+|.||+|||..
T Consensus 216 -------~v~~~~~-~~~~d~vvlAtGa~ 236 (457)
T PRK11749 216 -------DITLDEL-RAGYDAVFIGTGAG 236 (457)
T ss_pred -------ccCHHHH-HhhCCEEEEccCCC
Confidence 1222233 36799999999975
No 293
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.17 E-value=8.6e-06 Score=79.78 Aligned_cols=99 Identities=17% Similarity=0.190 Sum_probs=73.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+-.|..|++.|.+ |+++++.+... . . + ...+ .....+.+++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~---Vtli~~~~~il-~--~-----~----d~~~-----------~~~~~~~l~~ 219 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSE---THLVIRHERVL-R--S-----F----DSMI-----------SETITEEYEK 219 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCCC-c--c-----c----CHHH-----------HHHHHHHHHH
Confidence 36899999999999999999999876 99999875421 0 0 0 0000 1234566778
Q ss_pred cCcEEEcCCeeEEEECCC---CEEEccCC-cEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIAS---KTLLSATG-LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~---~~v~~~~~-~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.++..+. ..+.+.++ ..+.+|.+++|+|.+|+..
T Consensus 220 ~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 220 EGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred cCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 899999999999987542 23555566 5799999999999998754
No 294
>PRK12839 hypothetical protein; Provisional
Probab=98.16 E-value=6.5e-05 Score=75.57 Aligned_cols=66 Identities=23% Similarity=0.256 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe--CCCc-EE-ECCEEEEccc-CccChhhhh
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL--KDGR-TL-EADIVVVGVG-GRPLISLFK 269 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~--~~g~-~~-~~D~vi~a~G-~~p~~~~~~ 269 (434)
+..+...+.+.+++.|++++.++.++++..++++++.+|.. .+|+ ++ .++.||+|+| +.-|.++..
T Consensus 213 g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~~~~~ 283 (572)
T PRK12839 213 GTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPNDVDRRK 283 (572)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCHHHHH
Confidence 56677778888899999999999999997655688888765 3443 23 4589999998 555555543
No 295
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.16 E-value=5.1e-05 Score=71.26 Aligned_cols=38 Identities=26% Similarity=0.392 Sum_probs=34.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~ 44 (434)
+..||||||+|.+||++|+.|.+.|++ |+|+|.++..+
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~---v~ilEar~r~G 43 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQ---VQILEARDRVG 43 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcE---EEEEeccCCcC
Confidence 568999999999999999999999998 99999998754
No 296
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.16 E-value=1.1e-05 Score=79.63 Aligned_cols=99 Identities=14% Similarity=0.221 Sum_probs=72.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+|+|||+|+.|+.+|..|++.|.+ |+++++.+... +.. . +.+ .....+.+++
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l---~~~---------d---~~~--------~~~~~~~l~~ 236 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAE---VTILEALPAFL---AAA---------D---EQV--------AKEAAKAFTK 236 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEeCCCccC---CcC---------C---HHH--------HHHHHHHHHH
Confidence 46899999999999999999998876 99999875421 000 0 000 1233456677
Q ss_pred cCcEEEcCCeeEEEECCCCE--EEccC--C--cEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKT--LLSAT--G--LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~~--~--~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.+++.+... +.+.+ + .++.+|.+++|+|.+|+..
T Consensus 237 ~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~ 287 (475)
T PRK06327 237 QGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTD 287 (475)
T ss_pred cCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCC
Confidence 89999999999999866543 33333 3 4699999999999998754
No 297
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.16 E-value=3.1e-05 Score=77.89 Aligned_cols=99 Identities=17% Similarity=0.313 Sum_probs=75.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc--------C---Cc---cCCHHHHHHHHHHHHhcCcEEEcCCeEE
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC--------M---PR---LFTADIAAFYEGYYANKGIKIIKGTVAV 229 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~--------~---~~---~~~~~~~~~~~~~l~~~GV~~~~~~~v~ 229 (434)
-.++|||+|+.|+.+|..+++.|.+|+++++.+.- . +. ....++.+.+.+.+++.|++++ .+.|.
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~ 83 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEVL 83 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEEE
Confidence 47999999999999999999999999999875310 0 10 0124667788888889999986 66788
Q ss_pred EEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013914 230 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 230 ~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~ 266 (434)
.+.. ++....+.+.++ ++.+|.+|+|||.+|...
T Consensus 84 ~i~~--~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~ 117 (555)
T TIGR03143 84 DVDF--DGDIKTIKTARG-DYKTLAVLIATGASPRKL 117 (555)
T ss_pred EEEe--cCCEEEEEecCC-EEEEeEEEECCCCccCCC
Confidence 8876 334445666666 689999999999887653
No 298
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.15 E-value=9.9e-06 Score=81.77 Aligned_cols=65 Identities=18% Similarity=0.182 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC-Cc--EEEC-CEEEEccc-CccChhhhh
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD-GR--TLEA-DIVVVGVG-GRPLISLFK 269 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~-g~--~~~~-D~vi~a~G-~~p~~~~~~ 269 (434)
...+...+.+.+++.||+++.++.+.++.. +++++.+|...+ |+ ++.+ +.||+|+| +..|.++++
T Consensus 220 G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~~ 289 (578)
T PRK12843 220 GNALIGRLLYSLRARGVRILTQTDVESLET-DHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLRR 289 (578)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEe-eCCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHHH
Confidence 567788888999999999999999999876 367888876644 33 4676 68999999 555555553
No 299
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.15 E-value=8.2e-06 Score=82.87 Aligned_cols=59 Identities=15% Similarity=0.227 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC-CCcEEEEEe---CCCc--EEECCEEEEcccCc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNA-DGEVKEVKL---KDGR--TLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~-~g~v~~v~~---~~g~--~~~~D~vi~a~G~~ 262 (434)
+..+...+.+.++++|++++.+++|.++..++ ++.+..+.. .+++ ++.+|.||+|+|.-
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaw 295 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPF 295 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHh
Confidence 56778888888999999999999999998643 466666654 2343 57999999999943
No 300
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.11 E-value=1.2e-05 Score=79.08 Aligned_cols=98 Identities=17% Similarity=0.273 Sum_probs=73.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhc
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
.+++|||+|..|+.+|..|++.|.+ |+++++.+...-. . .... .....+.+++.
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~---Vtli~~~~~~l~~-----------~-d~~~-----------~~~l~~~L~~~ 231 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVK---VTLVSSRDRVLPG-----------E-DADA-----------AEVLEEVFARR 231 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCcCCCC-----------C-CHHH-----------HHHHHHHHHHC
Confidence 5899999999999999999998876 9999987542100 0 0000 12345667788
Q ss_pred CcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCcccc
Q 013914 86 GIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
|++++.++.+.+++.+.. .+.+.+++++.+|.+++|+|.+|+..
T Consensus 232 gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~ 277 (466)
T PRK07845 232 GMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTA 277 (466)
T ss_pred CcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCC
Confidence 999999999999865443 34556778899999999999998764
No 301
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=0.0001 Score=67.65 Aligned_cols=98 Identities=15% Similarity=0.203 Sum_probs=73.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCe-EEEEccCCc---------------cCCccCCHHHHHHHHHHHHhcCcEEEcCCe
Q 013914 164 GKAVVVGGGYIGLELSAALKINNID-VSMVYPEPW---------------CMPRLFTADIAAFYEGYYANKGIKIIKGTV 227 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~-v~lv~~~~~---------------~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~ 227 (434)
-.++|||+|+.|+-+|-.+.+.+.+ +.+++.... +......+++.+.+.+..+..|+++.. ..
T Consensus 4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~ 82 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE 82 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EE
Confidence 3689999999999999999999988 444443211 111124567888888888889999987 56
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013914 228 AVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 228 v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
+.+++...+ ...|++.+++ ++++.||+|+|..+..
T Consensus 83 v~~v~~~~~--~F~v~t~~~~-~~ak~vIiAtG~~~~~ 117 (305)
T COG0492 83 VEKVELEGG--PFKVKTDKGT-YEAKAVIIATGAGARK 117 (305)
T ss_pred EEEEeecCc--eEEEEECCCe-EEEeEEEECcCCcccC
Confidence 777776222 5688889986 9999999999976543
No 302
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.10 E-value=1.2e-05 Score=79.06 Aligned_cols=99 Identities=14% Similarity=0.238 Sum_probs=71.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+..|..+++.|.+ |+++|+.+... +.+.. .......+.+++
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~---Vtlie~~~~il-------------------~~~d~----~~~~~l~~~l~~ 227 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQ---VTVVEYLDRIC-------------------PGTDT----ETAKTLQKALTK 227 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEeCCCCCC-------------------CCCCH----HHHHHHHHHHHh
Confidence 47899999999999999999999876 99999875421 00000 001234566778
Q ss_pred cCcEEEcCCeeEEEECCCCE--EEcc---C--CcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKT--LLSA---T--GLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~---~--~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.++..+... +.+. + +.++.+|.+++|+|.+|+..
T Consensus 228 ~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 279 (466)
T PRK06115 228 QGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQ 279 (466)
T ss_pred cCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccc
Confidence 89999999999999765433 2222 2 34799999999999998653
No 303
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.10 E-value=5.6e-06 Score=78.87 Aligned_cols=118 Identities=22% Similarity=0.314 Sum_probs=69.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC-CCCCCc-----cCccccCCCCCCCC----------CC-
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA-PYERPA-----LSKAYLFPEGTARL----------PG- 65 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~-~~~~~~-----~~~~~~~~~~~~~~----------~~- 65 (434)
++.|||+|||||.||..||...+|.|.+ +.|+.-+... +...|. +.|+.+..+ ...+ .+
T Consensus 2 ~~~~DVIVIGgGHAG~EAA~AaARmG~k---tlLlT~~~dtig~msCNPaIGG~~KG~lvrE-IDALGG~Mg~~~D~~~I 77 (621)
T COG0445 2 PKEYDVIVIGGGHAGVEAALAAARMGAK---TLLLTLNLDTIGEMSCNPAIGGPGKGHLVRE-IDALGGLMGKAADKAGI 77 (621)
T ss_pred CCCCceEEECCCccchHHHHhhhccCCe---EEEEEcCCCceeecccccccCCcccceeEEe-ehhccchHHHhhhhcCC
Confidence 4569999999999999999999999988 7777766431 111111 122222111 0000 00
Q ss_pred -ccc---ccCCC--------CCCCChhhHh-----hcCcEEEcCCeeEEEECCCC----EEEccCCcEEEcceEEEecCC
Q 013914 66 -FHV---CVGSG--------GERLLPEWYK-----EKGIELILSTEIVRADIASK----TLLSATGLIFKYQILVIATGS 124 (434)
Q Consensus 66 -~~~---~~~~~--------~~~~~~~~~~-----~~~v~~~~~~~v~~i~~~~~----~v~~~~~~~~~~d~lvlAtG~ 124 (434)
|.. ..|+. +...+..+++ ..+++++.+ .|..+..++. .|.+.+|..+.++.+||+||.
T Consensus 78 Q~r~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGT 156 (621)
T COG0445 78 QFRMLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT 156 (621)
T ss_pred chhhccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence 000 00100 0011222222 257888887 6776665333 367789999999999999996
Q ss_pred C
Q 013914 125 T 125 (434)
Q Consensus 125 ~ 125 (434)
-
T Consensus 157 F 157 (621)
T COG0445 157 F 157 (621)
T ss_pred c
Confidence 4
No 304
>PRK06834 hypothetical protein; Provisional
Probab=98.10 E-value=5.2e-05 Score=74.95 Aligned_cols=100 Identities=33% Similarity=0.560 Sum_probs=76.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC---Ccc--CC----------------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM---PRL--FT---------------------------------- 204 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~---~~~--~~---------------------------------- 204 (434)
..|+|||+|+.|+-+|..|.+.|.+|+++++.+... ++. +.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 83 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD 83 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence 479999999999999999999999999999764311 000 00
Q ss_pred ----------------HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013914 205 ----------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 205 ----------------~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
..+.+.+.+.+++.|+++++++++++++.++++ ..+++.+|+++.+|.||.|.|..+..
T Consensus 84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~--v~v~~~~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG--VDVELSDGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEEEEecCCCCCc
Confidence 122345556677789999999999999874443 45677788889999999999987654
No 305
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.10 E-value=5.3e-05 Score=75.17 Aligned_cols=137 Identities=24% Similarity=0.288 Sum_probs=87.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc------------------------------C----------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------------------------------F---------- 203 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~------------------------------~---------- 203 (434)
|+|+|||+|++|+-.+..|.+.|.+++++++.+.+..-. +
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 699999999999999999999999999999875532110 0
Q ss_pred -CHHHHHHHHHHHHhcCc--EEEcCCeEEEEEecCCC---cEEEEEeCC-Cc--EEECCEEEEcccC--ccChhhh-hcc
Q 013914 204 -TADIAAFYEGYYANKGI--KIIKGTVAVGFTTNADG---EVKEVKLKD-GR--TLEADIVVVGVGG--RPLISLF-KGQ 271 (434)
Q Consensus 204 -~~~~~~~~~~~l~~~GV--~~~~~~~v~~i~~~~~g---~v~~v~~~~-g~--~~~~D~vi~a~G~--~p~~~~~-~~~ 271 (434)
..++.++++...+..++ .++++++|.+++..++. ....|++.+ |+ +..+|.|++|+|. .|+...- -.+
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~G 161 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFPG 161 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----CT
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhhh
Confidence 14678899999998887 58899999999874432 234566644 42 3468999999994 5655431 112
Q ss_pred ccccCCcEEeCCCCCC----CCCcEEEeccccc
Q 013914 272 VAENKGGIETDDFFKT----SADDVYAVGDVAT 300 (434)
Q Consensus 272 ~~~~~g~i~vd~~~~t----~~~~iya~GD~~~ 300 (434)
++.-.|.+.=...++. ..++|-++|-..+
T Consensus 162 ~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~S 194 (531)
T PF00743_consen 162 LEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNS 194 (531)
T ss_dssp GGGHCSEEEEGGG--TGGGGTTSEEEEESSSHH
T ss_pred hhcCCeeEEccccCcChhhcCCCEEEEEeCCHh
Confidence 3222355554444443 4678888885443
No 306
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.09 E-value=8.4e-06 Score=79.77 Aligned_cols=92 Identities=18% Similarity=0.192 Sum_probs=69.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------Cc-cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~-------~~-~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~ 233 (434)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+.+. +. .++.++.+...+.+++.||++++++.+..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~--- 208 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGK--- 208 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccCC---
Confidence 35789999999999999999999999999999876541 11 14667777777888999999999975411
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccC-ccC
Q 013914 234 NADGEVKEVKLKDGRTLEADIVVVGVGG-RPL 264 (434)
Q Consensus 234 ~~~g~v~~v~~~~g~~~~~D~vi~a~G~-~p~ 264 (434)
.+.+.+. ...+|.||+|+|. .|.
T Consensus 209 -------~v~~~~~-~~~yd~viiAtGa~~p~ 232 (449)
T TIGR01316 209 -------TATLEEL-FSQYDAVFIGTGAGLPK 232 (449)
T ss_pred -------cCCHHHH-HhhCCEEEEeCCCCCCC
Confidence 1233333 3468999999997 554
No 307
>PLN02507 glutathione reductase
Probab=98.09 E-value=1.5e-05 Score=78.94 Aligned_cols=99 Identities=17% Similarity=0.271 Sum_probs=73.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+-.|..+++.|.+ |+|+++.+... . . + ...+ .....+.+++
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~---Vtli~~~~~~l-~------~-~----d~~~-----------~~~l~~~l~~ 256 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGAT---VDLFFRKELPL-R------G-F----DDEM-----------RAVVARNLEG 256 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEEecCCcC-c------c-c----CHHH-----------HHHHHHHHHh
Confidence 36899999999999999999998876 99999875311 0 0 0 0000 1234456778
Q ss_pred cCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.++..+.+ .+.+.+++++.+|.+++|+|.+|+..
T Consensus 257 ~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~ 303 (499)
T PLN02507 257 RGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTK 303 (499)
T ss_pred CCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCC
Confidence 8999999999999875433 35556677899999999999998754
No 308
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.08 E-value=2e-05 Score=77.96 Aligned_cols=33 Identities=27% Similarity=0.472 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
|||+|||+|+||+.+|..+++.|.+ |+|+|++.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~---v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAK---TLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCC---EEEEeccc
Confidence 6999999999999999999999987 99999874
No 309
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.08 E-value=1.2e-05 Score=77.96 Aligned_cols=97 Identities=26% Similarity=0.330 Sum_probs=76.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhc
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
.+++|||+|+.|+.+|..|+++|.+ |+++|+.+...-. ++. +.+ .....+.++..
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~---v~l~e~~~~~~~~-------~~~-------~~~--------~~~~~~~l~~~ 191 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKK---VTLIEAADRLGGQ-------LLD-------PEV--------AEELAELLEKY 191 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCe---EEEEEcccccchh-------hhh-------HHH--------HHHHHHHHHHC
Confidence 6899999999999999999999987 9999998753210 000 010 13556778889
Q ss_pred CcEEEcCCeeEEEECCCCE-----EEccCCcEEEcceEEEecCCCcc
Q 013914 86 GIELILSTEIVRADIASKT-----LLSATGLIFKYQILVIATGSTVL 127 (434)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~-----v~~~~~~~~~~d~lvlAtG~~~~ 127 (434)
|++++.+..+..++...+. +...++..+++|.+++++|.+|+
T Consensus 192 gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 192 GVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred CcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence 9999999999999987653 45667778999999999999985
No 310
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.07 E-value=2e-05 Score=77.22 Aligned_cols=98 Identities=20% Similarity=0.281 Sum_probs=70.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+..|..|++.|.+ |++|++.+... +. + ...+ .....+ +.+
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~---Vtli~~~~~ll---~~-----~----d~~~-----------~~~l~~-~~~ 221 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTR---VTIVNRSTKLL---RH-----L----DEDI-----------SDRFTE-IAK 221 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCc---EEEEEccCccc---cc-----c----CHHH-----------HHHHHH-HHh
Confidence 46899999999999999999998876 99999875421 00 0 0000 011122 224
Q ss_pred cCcEEEcCCeeEEEECCCCE--EEccCCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.+++++.++.+..++.+... +.+.+++++.+|.+++|+|.+|+..
T Consensus 222 ~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~ 268 (452)
T TIGR03452 222 KKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGD 268 (452)
T ss_pred cCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCC
Confidence 58999999999999865543 4455677899999999999998753
No 311
>PRK07208 hypothetical protein; Provisional
Probab=98.05 E-value=5.9e-06 Score=81.96 Aligned_cols=57 Identities=23% Similarity=0.305 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe--CCCc--EEECCEEEEcccC
Q 013914 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL--KDGR--TLEADIVVVGVGG 261 (434)
Q Consensus 205 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~--~~g~--~~~~D~vi~a~G~ 261 (434)
..+.+.+.+.+++.|++++++++|++|..++++.+..+.. .+|+ ++.+|.||+++..
T Consensus 218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~ 278 (479)
T PRK07208 218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPL 278 (479)
T ss_pred chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCH
Confidence 4577888888999999999999999999855554444443 3453 5889999999884
No 312
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.05 E-value=6.3e-05 Score=73.49 Aligned_cols=66 Identities=12% Similarity=0.103 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC-CCcEEEEEeCC-CcEEECCEEEEccc-CccChhhhh
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNA-DGEVKEVKLKD-GRTLEADIVVVGVG-GRPLISLFK 269 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~-~g~v~~v~~~~-g~~~~~D~vi~a~G-~~p~~~~~~ 269 (434)
...+.+.+.+.+++.|++++++++++++..++ ++++.++...+ +.++.++.||+|+| +..|.+++.
T Consensus 122 g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~~ 190 (432)
T TIGR02485 122 GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWLR 190 (432)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHHH
Confidence 45678888888999999999999999998743 56777666543 35789999999999 666666554
No 313
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.05 E-value=2e-05 Score=77.24 Aligned_cols=99 Identities=20% Similarity=0.286 Sum_probs=72.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+..|..|++.|.+ |+++++.+... + ... +.+ .....+.+++
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l---~---------~~~---~~~--------~~~l~~~l~~ 211 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSK---VTILEAASLFL---P---------RED---RDI--------ADNIATILRD 211 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCC---C---------CcC---HHH--------HHHHHHHHHh
Confidence 46899999999999999999998876 99999875321 0 000 000 1234566778
Q ss_pred cCcEEEcCCeeEEEECCCCEEEcc-CCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKTLLSA-TGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~-~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.+++.+...+.+. ++.++.+|.+++|+|.+|+..
T Consensus 212 ~gV~v~~~~~v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G~~pn~~ 257 (441)
T PRK08010 212 QGVDIILNAHVERISHHENQVQVHSEHAQLAVDALLIASGRQPATA 257 (441)
T ss_pred CCCEEEeCCEEEEEEEcCCEEEEEEcCCeEEeCEEEEeecCCcCCC
Confidence 899999999999998765544332 223589999999999998753
No 314
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.05 E-value=2.3e-05 Score=77.71 Aligned_cols=98 Identities=14% Similarity=0.151 Sum_probs=72.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+-.|..|++.|.+ |++++++...+ .+ ...+ .....+.+++
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~---Vtli~~~~~l~----~~---------d~~~-----------~~~l~~~l~~ 234 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFD---VTVAVRSIPLR----GF---------DRQC-----------SEKVVEYMKE 234 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCcccc----cC---------CHHH-----------HHHHHHHHHH
Confidence 35899999999999999999999876 99998642111 00 0000 1234566778
Q ss_pred cCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+..+..... .+.+.+++++.+|.+++|+|-+|+..
T Consensus 235 ~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~ 281 (499)
T PTZ00052 235 QGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIK 281 (499)
T ss_pred cCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCcc
Confidence 8999999988887765432 35556777899999999999998754
No 315
>PRK07045 putative monooxygenase; Reviewed
Probab=98.04 E-value=7.1e-05 Score=72.06 Aligned_cols=103 Identities=19% Similarity=0.270 Sum_probs=77.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC--c---------------------------c-----------
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--R---------------------------L----------- 202 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~--~---------------------------~----------- 202 (434)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.. . .
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~ 84 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKE 84 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCc
Confidence 34799999999999999999999999999987653210 0 0
Q ss_pred ------------CC-------HHHHHHHHHHHH-hcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 203 ------------FT-------ADIAAFYEGYYA-NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 203 ------------~~-------~~~~~~~~~~l~-~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
.+ .++.+.+.+.+. ..|++++++++++.++.++++.+..+++++|+++.+|+||-|.|..
T Consensus 85 ~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~ 164 (388)
T PRK07045 85 LIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGAR 164 (388)
T ss_pred EEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCC
Confidence 00 122333444443 3579999999999998866666667888999999999999999976
Q ss_pred cCh
Q 013914 263 PLI 265 (434)
Q Consensus 263 p~~ 265 (434)
...
T Consensus 165 S~v 167 (388)
T PRK07045 165 SMI 167 (388)
T ss_pred hHH
Confidence 543
No 316
>PRK08244 hypothetical protein; Provisional
Probab=98.04 E-value=7.1e-05 Score=74.45 Aligned_cols=102 Identities=24% Similarity=0.417 Sum_probs=74.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc------------------------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------------ 201 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~------------------------------------------ 201 (434)
..|+|||+|+.|+-+|..|.+.|.+|+++++.+...+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL 82 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence 36999999999999999999999999999976432100
Q ss_pred -c------------C-CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-cEEECCEEEEcccCccCh
Q 013914 202 -L------------F-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-RTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 202 -~------------~-~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g-~~~~~D~vi~a~G~~p~~ 265 (434)
+ + ...+.+.+.+.+++.|++++.++++++++.++++....+...+| +++++|.||.|.|.+...
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~v 161 (493)
T PRK08244 83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIV 161 (493)
T ss_pred CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChHH
Confidence 0 0 01344566667778899999999999998744442222333356 479999999999986644
No 317
>PRK13748 putative mercuric reductase; Provisional
Probab=98.04 E-value=2.1e-05 Score=79.63 Aligned_cols=97 Identities=19% Similarity=0.272 Sum_probs=71.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+-.|..|++.|.+ |+|+++....+. . ...+ .....+.+++
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtli~~~~~l~~------------~-d~~~-----------~~~l~~~l~~ 322 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSK---VTILARSTLFFR------------E-DPAI-----------GEAVTAAFRA 322 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCE---EEEEecCccccc------------c-CHHH-----------HHHHHHHHHH
Confidence 46899999999999999999999876 999997532110 0 0000 1234566778
Q ss_pred cCcEEEcCCeeEEEECCCCEE--EccCCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKTL--LSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v--~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+..+..+...+ .+.+ .++.+|.+++|+|.+|+..
T Consensus 323 ~gI~i~~~~~v~~i~~~~~~~~v~~~~-~~i~~D~vi~a~G~~pn~~ 368 (561)
T PRK13748 323 EGIEVLEHTQASQVAHVDGEFVLTTGH-GELRADKLLVATGRAPNTR 368 (561)
T ss_pred CCCEEEcCCEEEEEEecCCEEEEEecC-CeEEeCEEEEccCCCcCCC
Confidence 899999999999887655443 3333 3699999999999998764
No 318
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.03 E-value=2e-05 Score=77.70 Aligned_cols=99 Identities=15% Similarity=0.240 Sum_probs=71.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc---CCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQ---GVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEW 81 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~---g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (434)
..+++|||||+.|+-.|..+... |.+ |+|+++.+.... .....+ .....+.
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~---Vtli~~~~~il~------------~~d~~~-----------~~~l~~~ 240 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGK---VTLCYRNNMILR------------GFDSTL-----------RKELTKQ 240 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCe---EEEEecCCcccc------------ccCHHH-----------HHHHHHH
Confidence 46899999999999999776654 554 999998754210 000000 1234566
Q ss_pred HhhcCcEEEcCCeeEEEECCC---CEEEccCCcEEEcceEEEecCCCcccc
Q 013914 82 YKEKGIELILSTEIVRADIAS---KTLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 82 ~~~~~v~~~~~~~v~~i~~~~---~~v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
+++.|++++.++.+.++..+. ..+.+.++.++.+|.+++|+|.+|+..
T Consensus 241 L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 241 LRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred HHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcc
Confidence 778899999999999887542 245566777899999999999998754
No 319
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.02 E-value=0.00017 Score=70.23 Aligned_cols=137 Identities=27% Similarity=0.315 Sum_probs=93.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCe-EEEEccCCccCCc-----------------------cC--------CHHHHHH
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPWCMPR-----------------------LF--------TADIAAF 210 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~-v~lv~~~~~~~~~-----------------------~~--------~~~~~~~ 210 (434)
-..++|||+|++|+-+|..|.+.|.. +.++++.+.+... .+ -.++.++
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y 87 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDY 87 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHH
Confidence 35899999999999999999999988 9999887532110 01 0126778
Q ss_pred HHHHHHhcCcE--EEcCCeEEEEEecCCCcEEEEEeCCCcE--EECCEEEEcccC--ccChhhhhccccccCCcE-EeCC
Q 013914 211 YEGYYANKGIK--IIKGTVAVGFTTNADGEVKEVKLKDGRT--LEADIVVVGVGG--RPLISLFKGQVAENKGGI-ETDD 283 (434)
Q Consensus 211 ~~~~l~~~GV~--~~~~~~v~~i~~~~~g~v~~v~~~~g~~--~~~D~vi~a~G~--~p~~~~~~~~~~~~~g~i-~vd~ 283 (434)
+...+++.++. +.+++.|..+..++++....|++++|.+ +.+|.||+|||. .|+..-+.....+ .|.+ ...+
T Consensus 88 ~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f-~g~~~HS~~ 166 (443)
T COG2072 88 IKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEF-KGRILHSAD 166 (443)
T ss_pred HHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCC-CceEEchhc
Confidence 88888888765 4556677777776677788899988866 459999999994 4444433222222 2322 2222
Q ss_pred ---CCCCCCCcEEEeccccc
Q 013914 284 ---FFKTSADDVYAVGDVAT 300 (434)
Q Consensus 284 ---~~~t~~~~iya~GD~~~ 300 (434)
..+..-++|-++|--++
T Consensus 167 ~~~~~~~~GKrV~VIG~GaS 186 (443)
T COG2072 167 WPNPEDLRGKRVLVIGAGAS 186 (443)
T ss_pred CCCccccCCCeEEEECCCcc
Confidence 22335678888886554
No 320
>PRK12831 putative oxidoreductase; Provisional
Probab=98.02 E-value=1.5e-05 Score=78.25 Aligned_cols=93 Identities=23% Similarity=0.253 Sum_probs=68.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------Ccc-CCHH-HHHHHHHHHHhcCcEEEcCCeEEEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PRL-FTAD-IAAFYEGYYANKGIKIIKGTVAVGFT 232 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~-------~~~-~~~~-~~~~~~~~l~~~GV~~~~~~~v~~i~ 232 (434)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+.+. +.+ ++.+ +.....+.+++.||++++++.+..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~-- 216 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK-- 216 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC--
Confidence 46899999999999999999999999999999765431 110 2233 666667788999999999985521
Q ss_pred ecCCCcEEEEEeCCC-cEEECCEEEEcccC-ccC
Q 013914 233 TNADGEVKEVKLKDG-RTLEADIVVVGVGG-RPL 264 (434)
Q Consensus 233 ~~~~g~v~~v~~~~g-~~~~~D~vi~a~G~-~p~ 264 (434)
.+.+++. +++.+|.|++|+|. .|.
T Consensus 217 --------~v~~~~~~~~~~~d~viiAtGa~~~~ 242 (464)
T PRK12831 217 --------TVTIDELLEEEGFDAVFIGSGAGLPK 242 (464)
T ss_pred --------cCCHHHHHhccCCCEEEEeCCCCCCC
Confidence 1222232 24569999999997 454
No 321
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.02 E-value=1.9e-05 Score=77.58 Aligned_cols=92 Identities=20% Similarity=0.224 Sum_probs=70.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------C-ccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------P-RLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~-------~-~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~ 233 (434)
.+++++|||+|++|+.+|..|++.|.+|+++++.+.+. + ..++.++.+...+.+++.|+++++++.+...
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 217 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD-- 217 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc--
Confidence 36789999999999999999999999999998876542 1 1146677777778899999999999866321
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013914 234 NADGEVKEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 234 ~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~ 264 (434)
+.+.+ ....+|.||+|+|..+.
T Consensus 218 --------~~~~~-~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 218 --------ISLDD-LLEDYDAVFLGVGTYRS 239 (467)
T ss_pred --------cCHHH-HHhcCCEEEEEeCCCCC
Confidence 11111 12469999999998764
No 322
>PRK14727 putative mercuric reductase; Provisional
Probab=98.01 E-value=2.5e-05 Score=77.22 Aligned_cols=97 Identities=18% Similarity=0.293 Sum_probs=70.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+-.|..|++.|.+ |+++++....+. + . +.. .....+.+++
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~---Vtlv~~~~~l~~---------~----d---~~~--------~~~l~~~L~~ 240 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSR---VTILARSTLLFR---------E----D---PLL--------GETLTACFEK 240 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCE---EEEEEcCCCCCc---------c----h---HHH--------HHHHHHHHHh
Confidence 36899999999999999999998876 999987532110 0 0 000 1234556778
Q ss_pred cCcEEEcCCeeEEEECCCCEE--EccCCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKTL--LSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v--~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+..+..+...+ ...+ .++.+|.+++|+|..|+..
T Consensus 241 ~GV~i~~~~~V~~i~~~~~~~~v~~~~-g~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 241 EGIEVLNNTQASLVEHDDNGFVLTTGH-GELRAEKLLISTGRHANTH 286 (479)
T ss_pred CCCEEEcCcEEEEEEEeCCEEEEEEcC-CeEEeCEEEEccCCCCCcc
Confidence 899999999998887554433 3333 4689999999999998754
No 323
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.01 E-value=8.5e-05 Score=72.01 Aligned_cols=100 Identities=22% Similarity=0.359 Sum_probs=74.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc----------cCCcc--CC---------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW----------CMPRL--FT--------------------------- 204 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~----------~~~~~--~~--------------------------- 204 (434)
..|+|||+|+.|+-+|..|.+.|.+|+++++.+. ..++. +.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 82 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEM 82 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeE
Confidence 3699999999999999999999999999997651 00000 00
Q ss_pred -----------------------------HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEE
Q 013914 205 -----------------------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIV 255 (434)
Q Consensus 205 -----------------------------~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~v 255 (434)
..+.+.+.+.+++.|++++.++++.+++.++++ ..+++.+|+++.+|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~g~~~~a~~v 160 (405)
T PRK05714 83 QVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDD--WLLTLADGRQLRAPLV 160 (405)
T ss_pred EEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEE
Confidence 012234445566779999999999999874444 4577889989999999
Q ss_pred EEcccCccCh
Q 013914 256 VVGVGGRPLI 265 (434)
Q Consensus 256 i~a~G~~p~~ 265 (434)
|.|.|.....
T Consensus 161 VgAdG~~S~v 170 (405)
T PRK05714 161 VAADGANSAV 170 (405)
T ss_pred EEecCCCchh
Confidence 9999975544
No 324
>PLN02568 polyamine oxidase
Probab=98.01 E-value=7.8e-06 Score=81.33 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=36.5
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCC--CCCcEEEEeCCCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGV--KPGELAIISKEAVA 43 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~--~~~~V~vie~~~~~ 43 (434)
||++.+||+|||||++||+||..|++.|. +..+|+|+|+++..
T Consensus 1 ~~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~ 45 (539)
T PLN02568 1 MVAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRI 45 (539)
T ss_pred CCCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCc
Confidence 88888999999999999999999999871 11239999999864
No 325
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.01 E-value=7.5e-06 Score=81.39 Aligned_cols=57 Identities=25% Similarity=0.297 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC----cEEECCEEEEcccCc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG----RTLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g----~~~~~D~vi~a~G~~ 262 (434)
+..+...+....+++|++++.+++|.++..+ +....+.+.++ .++.++.||.|+|.-
T Consensus 154 ~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~--~~~~~v~~~~~~g~~~~i~a~~VVnAaG~w 214 (502)
T PRK13369 154 DARLVVLNALDAAERGATILTRTRCVSARRE--GGLWRVETRDADGETRTVRARALVNAAGPW 214 (502)
T ss_pred HHHHHHHHHHHHHHCCCEEecCcEEEEEEEc--CCEEEEEEEeCCCCEEEEEecEEEECCCcc
Confidence 5666677777789999999999999999873 33345666554 258999999999953
No 326
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.00 E-value=0.00011 Score=71.15 Aligned_cols=99 Identities=30% Similarity=0.436 Sum_probs=75.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCccCCc-----------------------------------------
Q 013914 165 KAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPR----------------------------------------- 201 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g--~~v~lv~~~~~~~~~----------------------------------------- 201 (434)
.|+|||+|+.|+-+|..|++.| .+|+++++.+...+.
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~ 82 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDSR 82 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeCC
Confidence 6899999999999999999985 999999875321000
Q ss_pred ----------c---------------CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEE
Q 013914 202 ----------L---------------FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVV 256 (434)
Q Consensus 202 ----------~---------------~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi 256 (434)
. ....+.+.+.+.+++.|++++.++++++++.++++ ..+++.+|+++.+|.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vI 160 (403)
T PRK07333 83 TSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEG--VTVTLSDGSVLEARLLV 160 (403)
T ss_pred CCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCE--EEEEECCCCEEEeCEEE
Confidence 0 01234556666777789999999999999863332 46778889899999999
Q ss_pred EcccCccCh
Q 013914 257 VGVGGRPLI 265 (434)
Q Consensus 257 ~a~G~~p~~ 265 (434)
.|.|.....
T Consensus 161 ~AdG~~S~v 169 (403)
T PRK07333 161 AADGARSKL 169 (403)
T ss_pred EcCCCChHH
Confidence 999976543
No 327
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.00 E-value=3.2e-05 Score=76.34 Aligned_cols=98 Identities=12% Similarity=0.159 Sum_probs=70.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+-+|..|++.|.+ |+++++....+. . ...+ .....+.+++
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~---Vtli~~~~~l~~----~---------d~~~-----------~~~l~~~L~~ 232 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLD---VTVMVRSILLRG----F---------DQDC-----------ANKVGEHMEE 232 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCc---EEEEEecccccc----c---------CHHH-----------HHHHHHHHHH
Confidence 35899999999999999999999876 999987421110 0 0000 1234566778
Q ss_pred cCcEEEcCCeeEEEECCCC--EEEccCC---cEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASK--TLLSATG---LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~---~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+..+..... .+.+.++ .++.+|.+++|+|-+|+..
T Consensus 233 ~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~ 282 (484)
T TIGR01438 233 HGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTR 282 (484)
T ss_pred cCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCC
Confidence 8999999988877765433 3444444 3799999999999988754
No 328
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.99 E-value=2.3e-05 Score=76.52 Aligned_cols=91 Identities=15% Similarity=0.174 Sum_probs=66.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEccCCccCC--------c-cCCHHHHHHHHHHHHhcCcEEEcCCeEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKI--NNIDVSMVYPEPWCMP--------R-LFTADIAAFYEGYYANKGIKIIKGTVAVG 230 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~--~g~~v~lv~~~~~~~~--------~-~~~~~~~~~~~~~l~~~GV~~~~~~~v~~ 230 (434)
.+++|+|||+|+.|+.+|..|.+ .|.+|+++++.+.+.. . .....+...+.+.+++.+|+++.+..+.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg- 103 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLG- 103 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEEC-
Confidence 46899999999999999999987 7999999999886531 1 0123344566677888899998876541
Q ss_pred EEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 231 FTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 231 i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
..+.+++. ...+|.||+|+|..+
T Consensus 104 ---------~dvtl~~L-~~~yDaVIlAtGa~~ 126 (491)
T PLN02852 104 ---------RDVSLSEL-RDLYHVVVLAYGAES 126 (491)
T ss_pred ---------ccccHHHH-hhhCCEEEEecCCCC
Confidence 12333333 236999999999765
No 329
>PRK09126 hypothetical protein; Provisional
Probab=97.99 E-value=0.00011 Score=70.85 Aligned_cols=101 Identities=27% Similarity=0.408 Sum_probs=73.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------Cc--------------------c--------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR--------------------L-------------- 202 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~-------~~--------------------~-------------- 202 (434)
-.|+|||+|+.|+-+|..|++.|.+|+++++.+.+- .+ .
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~ 83 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKVL 83 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEEE
Confidence 479999999999999999999999999998765310 00 0
Q ss_pred ---------CC---------------HHHHHHHHHHH-HhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEE
Q 013914 203 ---------FT---------------ADIAAFYEGYY-ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVV 257 (434)
Q Consensus 203 ---------~~---------------~~~~~~~~~~l-~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~ 257 (434)
++ ..+.+.+.+.+ +..|++++.++++++++.++++ ..+.+++|+++++|.||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~a~~vI~ 161 (392)
T PRK09126 84 NGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG--AQVTLANGRRLTARLLVA 161 (392)
T ss_pred cCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe--EEEEEcCCCEEEeCEEEE
Confidence 00 01122222333 3468999999999999863333 467888899999999999
Q ss_pred cccCccChh
Q 013914 258 GVGGRPLIS 266 (434)
Q Consensus 258 a~G~~p~~~ 266 (434)
|.|......
T Consensus 162 AdG~~S~vr 170 (392)
T PRK09126 162 ADSRFSATR 170 (392)
T ss_pred eCCCCchhh
Confidence 999866543
No 330
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.97 E-value=2.9e-05 Score=76.51 Aligned_cols=98 Identities=12% Similarity=0.221 Sum_probs=70.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+..|..|++.|.+ |+++++.+... +. + ...+ .....+.+++
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l---~~-----~----d~~~-----------~~~~~~~l~~ 222 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVK---VTVFERGDRIL---PL-----E----DPEV-----------SKQAQKILSK 222 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCcC---cc-----h----hHHH-----------HHHHHHHHhh
Confidence 46899999999999999999999876 99999875421 00 0 0000 1233455667
Q ss_pred cCcEEEcCCeeEEEECCCC-EEEc--cC--CcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASK-TLLS--AT--GLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~-~v~~--~~--~~~~~~d~lvlAtG~~~~~~ 129 (434)
. ++++.++.+.+++.+.+ .+.+ .+ +.++.+|.+++|+|.+|+..
T Consensus 223 ~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~ 271 (460)
T PRK06292 223 E-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTD 271 (460)
T ss_pred c-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCC
Confidence 7 99999999999876543 3432 22 34699999999999998765
No 331
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.97 E-value=2.6e-05 Score=73.30 Aligned_cols=101 Identities=17% Similarity=0.237 Sum_probs=79.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
...||++|+|..|+-+|..|.....+ |++|++++.+- ..++.+ .......+++++
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~---VT~V~~e~~~~-------~~lf~~---------------~i~~~~~~y~e~ 267 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKS---VTVVFPEPWLL-------PRLFGP---------------SIGQFYEDYYEN 267 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCce---EEEEccCccch-------hhhhhH---------------HHHHHHHHHHHh
Confidence 46799999999999999999998766 99999986421 111111 112456788889
Q ss_pred cCcEEEcCCeeEEEECCC--C--EEEccCCcEEEcceEEEecCCCccccc
Q 013914 85 KGIELILSTEIVRADIAS--K--TLLSATGLIFKYQILVIATGSTVLRLT 130 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~--~--~v~~~~~~~~~~d~lvlAtG~~~~~~~ 130 (434)
.+++++.++.+.++.... + .|.+.++.++.+|-||+.+|++|+...
T Consensus 268 kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~ 317 (478)
T KOG1336|consen 268 KGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSF 317 (478)
T ss_pred cCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccccc
Confidence 999999999888887655 2 367789999999999999999998765
No 332
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.95 E-value=0.00013 Score=70.02 Aligned_cols=97 Identities=23% Similarity=0.349 Sum_probs=72.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CeEEEEccCCccCCc--------cC--------------------------------
Q 013914 165 KAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWCMPR--------LF-------------------------------- 203 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g-~~v~lv~~~~~~~~~--------~~-------------------------------- 203 (434)
.|+|||+|+.|+-+|..|.+.| .+|+++++.+.+.+. .+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 3799999999999999999999 999999876432110 00
Q ss_pred -----------------------CHHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcc
Q 013914 204 -----------------------TADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGV 259 (434)
Q Consensus 204 -----------------------~~~~~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~ 259 (434)
..++.+.+.+.+.+ .|++++.+++++++..++++ ..+++.+|+++.+|.||.|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vV~Ad 158 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY--VRVTLDNGQQLRAKLLIAAD 158 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe--EEEEECCCCEEEeeEEEEec
Confidence 01234444455555 49999999999999864443 45778888889999999999
Q ss_pred cCcc
Q 013914 260 GGRP 263 (434)
Q Consensus 260 G~~p 263 (434)
|...
T Consensus 159 G~~S 162 (382)
T TIGR01984 159 GANS 162 (382)
T ss_pred CCCh
Confidence 9654
No 333
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.95 E-value=0.00014 Score=70.73 Aligned_cols=97 Identities=22% Similarity=0.318 Sum_probs=72.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc--------------cC--------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------------LF-------------------------- 203 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~--------------~~-------------------------- 203 (434)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+.+... .+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSA 85 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCCc
Confidence 47999999999999999999999999999876432100 00
Q ss_pred ---------------------CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 204 ---------------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 204 ---------------------~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
...+.+.+.+.+++.|++++.+++|+++..+ ++.+..+. .+|.++.+|.||.|.|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~-~~g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 86 MTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVE-ADGDVIEAKTVILADGVN 163 (428)
T ss_pred eeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEE-cCCcEEECCEEEEEeCCC
Confidence 0112344566677889999999999998763 45544444 566789999999999974
No 334
>PRK05868 hypothetical protein; Validated
Probab=97.95 E-value=0.00011 Score=70.15 Aligned_cols=100 Identities=16% Similarity=0.149 Sum_probs=72.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc--c--CCH-------------H--------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--L--FTA-------------D-------------------- 206 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~--~--~~~-------------~-------------------- 206 (434)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+... . +.+ .
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 47999999999999999999999999999976443110 0 000 0
Q ss_pred ---------------------HHHHHHHHHH---hcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 207 ---------------------IAAFYEGYYA---NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 207 ---------------------~~~~~~~~l~---~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
....+.+.|. ..|+++++++++++++.+++ ...+++++|+++++|+||-|-|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~--~v~v~~~dg~~~~adlvIgADG~~ 159 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGD--SVRVTFERAAAREFDLVIGADGLH 159 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCC--eEEEEECCCCeEEeCEEEECCCCC
Confidence 0112222332 36899999999999976333 256889999999999999999966
Q ss_pred cCh
Q 013914 263 PLI 265 (434)
Q Consensus 263 p~~ 265 (434)
...
T Consensus 160 S~v 162 (372)
T PRK05868 160 SNV 162 (372)
T ss_pred chH
Confidence 544
No 335
>PTZ00058 glutathione reductase; Provisional
Probab=97.94 E-value=4.1e-05 Score=76.45 Aligned_cols=99 Identities=12% Similarity=0.117 Sum_probs=71.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+..|..+++.|.+ |+++++.+... +. + ...+ .....+.+++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~---Vtli~~~~~il---~~-----~----d~~i-----------~~~l~~~L~~ 290 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAE---SYIFARGNRLL---RK-----F----DETI-----------INELENDMKK 290 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCc---EEEEEeccccc---cc-----C----CHHH-----------HHHHHHHHHH
Confidence 46899999999999999999999876 99999875311 00 0 0000 1234456777
Q ss_pred cCcEEEcCCeeEEEECCCC---EEEccC-CcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASK---TLLSAT-GLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~---~v~~~~-~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.+..+.+++.+.. .+...+ ++++.+|.+++|+|.+|+..
T Consensus 291 ~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~ 339 (561)
T PTZ00058 291 NNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTE 339 (561)
T ss_pred CCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCcc
Confidence 8999999999998875432 233333 34799999999999888744
No 336
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.93 E-value=1.2e-05 Score=78.72 Aligned_cols=39 Identities=21% Similarity=0.361 Sum_probs=35.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~ 44 (434)
+++++|||||||+|||+||+.|.+.|++ |+|+|..+..+
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~---V~VLEARdRvG 51 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFD---VLVLEARDRVG 51 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCc---eEEEeccCCcC
Confidence 3468999999999999999999999998 99999998754
No 337
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.93 E-value=0.00014 Score=69.97 Aligned_cols=98 Identities=28% Similarity=0.395 Sum_probs=74.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC---------------------c--cC-----------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP---------------------R--LF----------------- 203 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~---------------------~--~~----------------- 203 (434)
..|+|||+|+.|+-+|..|.+.|.+|+++++.+.+.. . ..
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 85 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVF 85 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEE
Confidence 4799999999999999999999999999987754311 0 00
Q ss_pred ------------------------CHHHHHHHHHHHHhcC-cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEc
Q 013914 204 ------------------------TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVG 258 (434)
Q Consensus 204 ------------------------~~~~~~~~~~~l~~~G-V~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a 258 (434)
...+.+.+.+.+++.| ++++ +.+++++...+++ ..+++.+|+++.+|.+|.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~a 162 (388)
T PRK07608 86 GDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDA--ATLTLADGQVLRADLVVGA 162 (388)
T ss_pred ECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCe--EEEEECCCCEEEeeEEEEe
Confidence 1123445556667777 9998 8889998763333 4688888888999999999
Q ss_pred ccCccC
Q 013914 259 VGGRPL 264 (434)
Q Consensus 259 ~G~~p~ 264 (434)
.|....
T Consensus 163 dG~~S~ 168 (388)
T PRK07608 163 DGAHSW 168 (388)
T ss_pred CCCCch
Confidence 997654
No 338
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.93 E-value=3.3e-05 Score=76.30 Aligned_cols=89 Identities=24% Similarity=0.264 Sum_probs=68.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------Cc-cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 234 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~-------~~-~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~ 234 (434)
+++++|||+|+.|+.+|..|.+.|.+|+++++.+++. +. .++.++.....+.+++.||++++++.+.. ..
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~-~~- 220 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGV-DI- 220 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCC-cc-
Confidence 4799999999999999999999999999999877642 11 13566776777888999999999987631 10
Q ss_pred CCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 235 ADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 235 ~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
. .+.....+|.|++|+|..
T Consensus 221 --------~-~~~~~~~~d~VilAtGa~ 239 (485)
T TIGR01317 221 --------S-ADELKEQFDAVVLAGGAT 239 (485)
T ss_pred --------C-HHHHHhhCCEEEEccCCC
Confidence 0 011135699999999987
No 339
>PRK07588 hypothetical protein; Provisional
Probab=97.93 E-value=0.00011 Score=70.78 Aligned_cols=98 Identities=18% Similarity=0.221 Sum_probs=71.5
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc------------------------------------------
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------------------------------------------ 202 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~------------------------------------------ 202 (434)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+....
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRRK 81 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCEE
Confidence 68999999999999999999999999998765431100
Q ss_pred --CC-----------------HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 203 --FT-----------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 203 --~~-----------------~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
++ .++.+.+.+.+ ..+++++++++|++++.++++ ..+++++|+++++|+||-|-|...
T Consensus 82 ~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 82 ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEHRDG--VRVTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred EEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEECCCe--EEEEECCCCEEEeCEEEECCCCCc
Confidence 00 01122222222 347999999999999874333 457889999999999999999755
Q ss_pred Ch
Q 013914 264 LI 265 (434)
Q Consensus 264 ~~ 265 (434)
.+
T Consensus 159 ~v 160 (391)
T PRK07588 159 HV 160 (391)
T ss_pred cc
Confidence 44
No 340
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.93 E-value=2.9e-05 Score=81.04 Aligned_cols=94 Identities=16% Similarity=0.202 Sum_probs=70.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------Cc-cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~-------~~-~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~ 233 (434)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. .++.++.+...+.+++.||+++.++.+..
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~--- 506 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGK--- 506 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC---
Confidence 46789999999999999999999999999999865431 11 13566667667788899999999875411
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccC-ccCh
Q 013914 234 NADGEVKEVKLKDGRTLEADIVVVGVGG-RPLI 265 (434)
Q Consensus 234 ~~~g~v~~v~~~~g~~~~~D~vi~a~G~-~p~~ 265 (434)
.+++++.....+|.||+|+|. .|..
T Consensus 507 -------~v~~~~l~~~~ydavvlAtGa~~~~~ 532 (752)
T PRK12778 507 -------TITIEELEEEGFKGIFIASGAGLPNF 532 (752)
T ss_pred -------cCCHHHHhhcCCCEEEEeCCCCCCCC
Confidence 233334345669999999997 4543
No 341
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.93 E-value=0.00012 Score=71.30 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=57.1
Q ss_pred CeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 187 IDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 187 ~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
..-.+..+.+-.+. +..+.+.+....++.|..++.++.|+++... ++...+|++..| .+++..+|-|+|+-.
T Consensus 172 v~g~Ly~P~DG~~D---P~~lC~ala~~A~~~GA~viE~cpV~~i~~~-~~~~~gVeT~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 172 VYGGLYSPGDGVMD---PAGLCQALARAASALGALVIENCPVTGLHVE-TDKFGGVETPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred heeeeecCCCcccC---HHHHHHHHHHHHHhcCcEEEecCCcceEEee-cCCccceeccCc-ceecceEEechhHHH
Confidence 34456666665543 5567889999999999999999999999874 444458999999 799999999999644
No 342
>PRK06184 hypothetical protein; Provisional
Probab=97.92 E-value=0.00015 Score=72.29 Aligned_cols=98 Identities=24% Similarity=0.385 Sum_probs=73.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc------------------------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------------ 201 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~------------------------------------------ 201 (434)
-.|+|||+|+.|+-+|..|++.|.+|+++++.+.+...
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 83 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGSV 83 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCceE
Confidence 47999999999999999999999999999876332100
Q ss_pred ---------------------cCC-HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCcEEECCEEE
Q 013914 202 ---------------------LFT-ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGRTLEADIVV 256 (434)
Q Consensus 202 ---------------------~~~-~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~---~~g~~~~~D~vi 256 (434)
.++ ..+.+.+.+.+++.|+++++++++++++.++++ ..+++ .+++++.+|.||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~--v~v~~~~~~~~~~i~a~~vV 161 (502)
T PRK06184 84 AESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADG--VTARVAGPAGEETVRARYLV 161 (502)
T ss_pred EEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCc--EEEEEEeCCCeEEEEeCEEE
Confidence 000 112345666677789999999999999875444 33444 556789999999
Q ss_pred EcccCcc
Q 013914 257 VGVGGRP 263 (434)
Q Consensus 257 ~a~G~~p 263 (434)
.|.|...
T Consensus 162 gADG~~S 168 (502)
T PRK06184 162 GADGGRS 168 (502)
T ss_pred ECCCCch
Confidence 9999654
No 343
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.92 E-value=0.00026 Score=60.07 Aligned_cols=110 Identities=18% Similarity=0.205 Sum_probs=72.8
Q ss_pred HHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc------CC-------------------------
Q 013914 156 EAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------FT------------------------- 204 (434)
Q Consensus 156 ~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~------~~------------------------- 204 (434)
+.+.+.....++|||+|++|+-+|..|++.|.+|.++++...+.... |.
T Consensus 10 ~~l~~~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g 89 (230)
T PF01946_consen 10 EDLYDYLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDG 89 (230)
T ss_dssp HHHHHHTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSE
T ss_pred HHHHhhccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCe
Confidence 33433356789999999999999999999999999999875543221 10
Q ss_pred ------HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC------C-----CcEEECCEEEEcccCccCh
Q 013914 205 ------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK------D-----GRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 205 ------~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~------~-----g~~~~~D~vi~a~G~~p~~ 265 (434)
.++...+....-+.|++++....|+.+...+++++.++... . --.+++..||-|||...+.
T Consensus 90 ~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v 167 (230)
T PF01946_consen 90 YYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEV 167 (230)
T ss_dssp EEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSS
T ss_pred EEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHH
Confidence 12334444445558999999999999866445788877663 2 2378999999999976544
No 344
>PLN02697 lycopene epsilon cyclase
Probab=97.91 E-value=0.00016 Score=71.51 Aligned_cols=98 Identities=20% Similarity=0.260 Sum_probs=71.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc-----------------------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL----------------------------------------- 202 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~----------------------------------------- 202 (434)
-.|+|||+|+.|+.+|..+++.|.+|.++++...+.+..
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~ 188 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR 188 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence 479999999999999999999999999998642221110
Q ss_pred -CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 203 -FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 203 -~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
-...+.+.+.+.+.+.|+++ .+++|+++...+++ ...+.+.+|.++.++.||.|+|...
T Consensus 189 V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~-~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 189 VSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDG-LRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred EcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCc-EEEEEEcCCcEEECCEEEECCCcCh
Confidence 00123355556667789998 57789998763333 3335667888999999999999765
No 345
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.91 E-value=0.00021 Score=77.85 Aligned_cols=36 Identities=31% Similarity=0.475 Sum_probs=33.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
..+||||||+|.||++||.++++.|.+ |+|+||.+.
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~---VivlEK~~~ 443 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQ---VILLEKEAK 443 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCc---EEEEEccCC
Confidence 358999999999999999999999987 999999865
No 346
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.91 E-value=5.4e-05 Score=75.00 Aligned_cols=81 Identities=22% Similarity=0.223 Sum_probs=65.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 241 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~ 241 (434)
.+++++|+|+|.+|+++|..|.+.|.+|+++++.+ .+....+.+.+++.||+++++..+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~--------~~~~~~~~~~l~~~gv~~~~~~~~~------------ 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD--------DERHRALAAILEALGATVRLGPGPT------------ 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc--------hhhhHHHHHHHHHcCCEEEECCCcc------------
Confidence 46899999999999999999999999999998653 2334455667888999998876432
Q ss_pred EEeCCCcEEECCEEEEcccCccChhhh
Q 013914 242 VKLKDGRTLEADIVVVGVGGRPLISLF 268 (434)
Q Consensus 242 v~~~~g~~~~~D~vi~a~G~~p~~~~~ 268 (434)
....+|+||+++|..|+.+++
T Consensus 75 ------~~~~~D~Vv~s~Gi~~~~~~~ 95 (480)
T PRK01438 75 ------LPEDTDLVVTSPGWRPDAPLL 95 (480)
T ss_pred ------ccCCCCEEEECCCcCCCCHHH
Confidence 024589999999999999865
No 347
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.90 E-value=1.4e-05 Score=79.32 Aligned_cols=57 Identities=26% Similarity=0.378 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC---Cc--EEECCEEEEcccCc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---GR--TLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~---g~--~~~~D~vi~a~G~~ 262 (434)
+..+...+...++++|++++.+++|.++..+ ++ ...+.+.+ |+ ++.++.||.|+|.-
T Consensus 154 ~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~-~~-~~~v~~~~~~~g~~~~i~a~~VVnAaG~w 215 (508)
T PRK12266 154 DARLVVLNARDAAERGAEILTRTRVVSARRE-NG-LWHVTLEDTATGKRYTVRARALVNAAGPW 215 (508)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEe-CC-EEEEEEEEcCCCCEEEEEcCEEEECCCcc
Confidence 4556666777788999999999999999762 33 24555543 53 68999999999953
No 348
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.89 E-value=5.6e-05 Score=79.50 Aligned_cols=90 Identities=14% Similarity=0.120 Sum_probs=65.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC-------c-cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------R-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 234 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~-------~-~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~ 234 (434)
+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. . ..+.+..+...+.+++.||+++++... .
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~-d---- 611 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSP-D---- 611 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEeccc-c----
Confidence 47899999999999999999999999999998765321 1 124455555667778899999887421 1
Q ss_pred CCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013914 235 ADGEVKEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 235 ~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~ 264 (434)
+.+.+.+...+|.|++|+|..+.
T Consensus 612 -------~~ve~l~~~gYDaVIIATGA~~~ 634 (1012)
T TIGR03315 612 -------LTVAELKNQGYKYVILAIGAWKH 634 (1012)
T ss_pred -------eEhhhhhcccccEEEECCCCCCC
Confidence 11222234568999999997643
No 349
>PRK06753 hypothetical protein; Provisional
Probab=97.88 E-value=0.00014 Score=69.64 Aligned_cols=100 Identities=16% Similarity=0.190 Sum_probs=70.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc----CCHHH---------------------------------
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL----FTADI--------------------------------- 207 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~----~~~~~--------------------------------- 207 (434)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.... +.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~ 81 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL 81 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence 68999999999999999999999999999875431100 00000
Q ss_pred ---------------HHHHHHHHHh--cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013914 208 ---------------AAFYEGYYAN--KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 208 ---------------~~~~~~~l~~--~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~ 266 (434)
...+.+.|.+ .+.++++++++++++.++++ ..+++++|+++.+|+||-|-|....+.
T Consensus 82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~~~~vigadG~~S~vR 155 (373)
T PRK06753 82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDK--VTIHFADGESEAFDLCIGADGIHSKVR 155 (373)
T ss_pred eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCc--EEEEECCCCEEecCEEEECCCcchHHH
Confidence 1122223322 24578999999999863333 467888999999999999999765443
No 350
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.88 E-value=0.00015 Score=72.11 Aligned_cols=96 Identities=20% Similarity=0.202 Sum_probs=69.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC-ccC--C---c--------------cC--------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP-WCM--P---R--------------LF-------------------- 203 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~-~~~--~---~--------------~~-------------------- 203 (434)
-.|+|||+|+.|+++|..+++.|.+|.++++.. .+. + . .+
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~ 84 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNT 84 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeeccc
Confidence 368999999999999999999999999998763 110 0 0 00
Q ss_pred -------------CH-HHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 204 -------------TA-DIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 204 -------------~~-~~~~~~~~~l~~~-GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
|. .+...+.+.+++. |++++ ...+.++.. +++++.+|.+.+|..+.|+.||+|+|.
T Consensus 85 skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~-e~grV~GV~t~dG~~I~Ak~VIlATGT 155 (618)
T PRK05192 85 SKGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIV-ENGRVVGVVTQDGLEFRAKAVVLTTGT 155 (618)
T ss_pred CCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEe-cCCEEEEEEECCCCEEECCEEEEeeCc
Confidence 00 0123344445444 78875 456777765 467788899999999999999999993
No 351
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.87 E-value=6.6e-05 Score=74.06 Aligned_cols=98 Identities=11% Similarity=0.265 Sum_probs=69.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+.+|..|++.|.+ |+||++.+... + .....+ .....+.+++
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~---Vtlv~~~~~il---~---------~~d~~~-----------~~~~~~~l~~ 227 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSE---VDVVEMFDQVI---P---------AADKDI-----------VKVFTKRIKK 227 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCC---EEEEecCCCCC---C---------cCCHHH-----------HHHHHHHHhh
Confidence 36899999999999999999999876 99999886421 0 000000 1123445555
Q ss_pred cCcEEEcCCeeEEEECCCCE--EEccC--C--cEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKT--LLSAT--G--LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~~--~--~~~~~d~lvlAtG~~~~~~ 129 (434)
. ++++.++.+..+...... +.+.+ + .++.+|.+++|+|.+|+..
T Consensus 228 ~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~ 277 (471)
T PRK06467 228 Q-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGK 277 (471)
T ss_pred c-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCC
Confidence 6 999999999988754443 33333 2 3699999999999998764
No 352
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.86 E-value=3.6e-05 Score=71.55 Aligned_cols=55 Identities=18% Similarity=0.244 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEccc
Q 013914 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 260 (434)
Q Consensus 205 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G 260 (434)
..++..+.+-+++.|-++.+.+.|++|.. ++|++.+|.++||+++.+..|+..++
T Consensus 264 Gavs~aia~~~~~~GaeI~tka~Vq~Ill-d~gka~GV~L~dG~ev~sk~VvSNAt 318 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAGAEIFTKATVQSILL-DSGKAVGVRLADGTEVRSKIVVSNAT 318 (561)
T ss_pred hHHHHHHHHHHHhccceeeehhhhhheec-cCCeEEEEEecCCcEEEeeeeecCCc
Confidence 46788888999999999999999999988 45999999999999999988888666
No 353
>PRK07190 hypothetical protein; Provisional
Probab=97.86 E-value=0.00027 Score=69.81 Aligned_cols=98 Identities=16% Similarity=0.295 Sum_probs=73.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC----------------------------------------cc-
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP----------------------------------------RL- 202 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~----------------------------------------~~- 202 (434)
..|+|||+|+.|+-+|..|++.|.+|.++++.+.... ..
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i 85 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI 85 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence 4799999999999999999999999999987643110 00
Q ss_pred --------------------CC-HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 203 --------------------FT-ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 203 --------------------~~-~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
++ ..+.+.+.+.+++.|++++.++++++++.++++ ..+.+.+|+++.|+.||.|.|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~--v~v~~~~g~~v~a~~vVgADG~ 163 (487)
T PRK07190 86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAG--CLTTLSNGERIQSRYVIGADGS 163 (487)
T ss_pred eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe--eEEEECCCcEEEeCEEEECCCC
Confidence 00 112334455677889999999999999875444 3456677888999999999997
Q ss_pred cc
Q 013914 262 RP 263 (434)
Q Consensus 262 ~p 263 (434)
+.
T Consensus 164 ~S 165 (487)
T PRK07190 164 RS 165 (487)
T ss_pred CH
Confidence 54
No 354
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.85 E-value=0.00026 Score=68.21 Aligned_cols=97 Identities=19% Similarity=0.269 Sum_probs=71.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc-------------------------------------------
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------------- 201 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~------------------------------------------- 201 (434)
.|+|||+|+.|+.+|..|.+.|.+|+++++.+.+...
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 3799999999999999999999999999976532100
Q ss_pred -cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 202 -LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 202 -~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
.-...+.+.+.+.+.+.|++++ ..++..+... ++....+++.+|+++.++.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~-~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEAD-GVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEec-CCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 0002334555666677899886 5578888763 2334567888888999999999999766
No 355
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.83 E-value=0.00019 Score=68.01 Aligned_cols=101 Identities=29% Similarity=0.382 Sum_probs=72.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc------------------------------------------
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------------------------------------------ 202 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~------------------------------------------ 202 (434)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+.+..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~ 82 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD 82 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence 68999999999999999999999999999874321100
Q ss_pred --------------------------CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-CCc--EEECC
Q 013914 203 --------------------------FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DGR--TLEAD 253 (434)
Q Consensus 203 --------------------------~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~-~g~--~~~~D 253 (434)
....+.+.+.+.+++.|+++++++++..+..+.++....+... +|+ ++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~ad 162 (356)
T PF01494_consen 83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEAD 162 (356)
T ss_dssp SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEES
T ss_pred ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEe
Confidence 0124566777788888999999999999987555433333333 343 68999
Q ss_pred EEEEcccCccCh
Q 013914 254 IVVVGVGGRPLI 265 (434)
Q Consensus 254 ~vi~a~G~~p~~ 265 (434)
+||-|-|....+
T Consensus 163 lvVgADG~~S~v 174 (356)
T PF01494_consen 163 LVVGADGAHSKV 174 (356)
T ss_dssp EEEE-SGTT-HH
T ss_pred eeecccCcccch
Confidence 999999976544
No 356
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.83 E-value=0.00046 Score=66.56 Aligned_cols=136 Identities=21% Similarity=0.205 Sum_probs=92.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC----------------------------------------cc
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP----------------------------------------RL 202 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~----------------------------------------~~ 202 (434)
.++++|||+|++|+-.|..|.+.|.++++++|.+.+.. +.
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~ 85 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY 85 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCccc
Confidence 68999999999999999999999999999988754310 00
Q ss_pred -CC-HHHHHHHHHHHHhcCc--EEEcCCeEEEEEecCCCcEEEEEeCCC----cEEECCEEEEcccCc--cChhhhhcc-
Q 013914 203 -FT-ADIAAFYEGYYANKGI--KIIKGTVAVGFTTNADGEVKEVKLKDG----RTLEADIVVVGVGGR--PLISLFKGQ- 271 (434)
Q Consensus 203 -~~-~~~~~~~~~~l~~~GV--~~~~~~~v~~i~~~~~g~v~~v~~~~g----~~~~~D~vi~a~G~~--p~~~~~~~~- 271 (434)
.+ .++.++|...+++.++ .+.+++.+..+....+| ...|.+.+. ++..+|.|++|+|.- |+....+..
T Consensus 86 ~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~g-kW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~~ 164 (448)
T KOG1399|consen 86 FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKG-KWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGPG 164 (448)
T ss_pred CCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCC-ceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCCc
Confidence 11 2567888888888886 57788888888763323 245555443 366799999999955 666554432
Q ss_pred ccc-cCCcEEeCCCCCC---CCCcEEEecccc
Q 013914 272 VAE-NKGGIETDDFFKT---SADDVYAVGDVA 299 (434)
Q Consensus 272 ~~~-~~g~i~vd~~~~t---~~~~iya~GD~~ 299 (434)
+.. ....+..-++-.. ....|.++|--.
T Consensus 165 ~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~ 196 (448)
T KOG1399|consen 165 IESFKGKIIHSHDYKSPEKFRDKVVLVVGCGN 196 (448)
T ss_pred hhhcCCcceehhhccCcccccCceEEEECCCc
Confidence 222 3333444443322 457788888433
No 357
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.82 E-value=0.00029 Score=67.74 Aligned_cols=101 Identities=20% Similarity=0.263 Sum_probs=72.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc--cC---C---c--cCCH----------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW--CM---P---R--LFTA---------------------------- 205 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~--~~---~---~--~~~~---------------------------- 205 (434)
..|+|||+|+.|+-+|..|++.|.+|+++++.+. +. + + .+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~ 83 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET 83 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence 3799999999999999999999999999996531 00 0 0 0000
Q ss_pred ---------------------------HHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEE
Q 013914 206 ---------------------------DIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVV 257 (434)
Q Consensus 206 ---------------------------~~~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~ 257 (434)
.+...+.+.+++ .+++++.++++++++.++++ ..+++++|+++++|+||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~~~lvIg 161 (384)
T PRK08849 84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG--NRVTLESGAEIEAKWVIG 161 (384)
T ss_pred EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe--EEEEECCCCEEEeeEEEE
Confidence 001112222333 47999999999999874444 468889999999999999
Q ss_pred cccCccChh
Q 013914 258 GVGGRPLIS 266 (434)
Q Consensus 258 a~G~~p~~~ 266 (434)
|.|......
T Consensus 162 ADG~~S~vR 170 (384)
T PRK08849 162 ADGANSQVR 170 (384)
T ss_pred ecCCCchhH
Confidence 999876554
No 358
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.82 E-value=5.3e-05 Score=80.89 Aligned_cols=92 Identities=24% Similarity=0.228 Sum_probs=68.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC-------c-cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------R-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 234 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~-------~-~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~ 234 (434)
+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. . ..+.++.+...+.+++.||++++++.+. .
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg-~--- 505 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIG-K--- 505 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccC-C---
Confidence 57899999999999999999999999999998765421 1 1367788888888999999999997541 1
Q ss_pred CCCcEEEEEeCCC-cEEECCEEEEcccCc-cC
Q 013914 235 ADGEVKEVKLKDG-RTLEADIVVVGVGGR-PL 264 (434)
Q Consensus 235 ~~g~v~~v~~~~g-~~~~~D~vi~a~G~~-p~ 264 (434)
.+++.+- +...+|.||+|||.. |.
T Consensus 506 ------~~~~~~l~~~~~yDaViIATGa~~pr 531 (1006)
T PRK12775 506 ------TFTVPQLMNDKGFDAVFLGVGAGAPT 531 (1006)
T ss_pred ------ccCHHHHhhccCCCEEEEecCCCCCC
Confidence 1111111 123589999999974 44
No 359
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.81 E-value=5.3e-05 Score=77.49 Aligned_cols=91 Identities=22% Similarity=0.253 Sum_probs=69.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC--------CccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--------PRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~--------~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~ 233 (434)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+.+. +..++.++.+...+.+++.||++++++.+..-
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 386 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRD-- 386 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCc--
Confidence 36899999999999999999999999999999887642 11256777777778899999999999865210
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 234 NADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 234 ~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
+.+.+. ...+|.|++|+|..+
T Consensus 387 --------~~~~~l-~~~~DaV~latGa~~ 407 (639)
T PRK12809 387 --------ITFSDL-TSEYDAVFIGVGTYG 407 (639)
T ss_pred --------CCHHHH-HhcCCEEEEeCCCCC
Confidence 111111 246899999999754
No 360
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.81 E-value=0.00032 Score=68.26 Aligned_cols=101 Identities=25% Similarity=0.393 Sum_probs=70.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC----Cc--cCC--------------------------------
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM----PR--LFT-------------------------------- 204 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~----~~--~~~-------------------------------- 204 (434)
..+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+. ++ .+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 97 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD 97 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence 3589999999999999999999999999998764321 00 000
Q ss_pred -----------------------HHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCC-C--cEEECCEEEE
Q 013914 205 -----------------------ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKD-G--RTLEADIVVV 257 (434)
Q Consensus 205 -----------------------~~~~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~g~v~~v~~~~-g--~~~~~D~vi~ 257 (434)
..+.+.+.+.+.+ .+|++++++++++++.++++ ..+++.+ + .++++|+||.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~--~~v~~~~~~~~~~i~adlvIg 175 (415)
T PRK07364 98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA--ATVTLEIEGKQQTLQSKLVVA 175 (415)
T ss_pred CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--eEEEEccCCcceEEeeeEEEE
Confidence 1122333334444 37999999999999874443 3456653 2 3699999999
Q ss_pred cccCccCh
Q 013914 258 GVGGRPLI 265 (434)
Q Consensus 258 a~G~~p~~ 265 (434)
|.|.....
T Consensus 176 ADG~~S~v 183 (415)
T PRK07364 176 ADGARSPI 183 (415)
T ss_pred eCCCCchh
Confidence 99976544
No 361
>PRK08013 oxidoreductase; Provisional
Probab=97.79 E-value=0.00036 Score=67.46 Aligned_cols=100 Identities=20% Similarity=0.211 Sum_probs=73.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc----------cCCH----------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------LFTA---------------------------- 205 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~----------~~~~---------------------------- 205 (434)
..|+|||+|+.|+-+|..|++.|.+|+++++.+.+... .+.+
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~~ 83 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGMEV 83 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEEE
Confidence 47999999999999999999999999999976531100 0000
Q ss_pred ----------------------------HHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEE
Q 013914 206 ----------------------------DIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVV 256 (434)
Q Consensus 206 ----------------------------~~~~~~~~~l~~~-GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi 256 (434)
.+.+.+.+.+++. ||++++++++.+++.++++ ..+++.+|+++.+|+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v~v~~~~g~~i~a~lvV 161 (400)
T PRK08013 84 WDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE--AFLTLKDGSMLTARLVV 161 (400)
T ss_pred EeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--EEEEEcCCCEEEeeEEE
Confidence 1123333444443 7999999999999774443 46778899999999999
Q ss_pred EcccCccCh
Q 013914 257 VGVGGRPLI 265 (434)
Q Consensus 257 ~a~G~~p~~ 265 (434)
-|-|.....
T Consensus 162 gADG~~S~v 170 (400)
T PRK08013 162 GADGANSWL 170 (400)
T ss_pred EeCCCCcHH
Confidence 999976544
No 362
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.78 E-value=6.6e-05 Score=74.06 Aligned_cols=90 Identities=18% Similarity=0.151 Sum_probs=67.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc--------cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~ 233 (434)
.+++++|||+|+.|+.+|..|.+.|.+|+++++.+.+... .++.++.....+.+++.||++++++.+.. ..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-~~ 220 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK-DI 220 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC-cC
Confidence 3579999999999999999999999999999987665211 13556666667788999999999986531 10
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 234 NADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 234 ~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
.. +.....+|.|++|+|..
T Consensus 221 ---------~~-~~~~~~~d~vvlAtGa~ 239 (471)
T PRK12810 221 ---------TA-EELLAEYDAVFLGTGAY 239 (471)
T ss_pred ---------CH-HHHHhhCCEEEEecCCC
Confidence 00 11124699999999986
No 363
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.77 E-value=0.0004 Score=66.46 Aligned_cols=98 Identities=14% Similarity=0.279 Sum_probs=71.5
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCC----ccCC--c--cC---------------------------------
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEP----WCMP--R--LF--------------------------------- 203 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~----~~~~--~--~~--------------------------------- 203 (434)
.|+|||+|+.|+-+|..|++.|.+|+++++.+ .+.+ + .+
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 82 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDNK 82 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEECC
Confidence 68999999999999999999999999999642 1000 0 00
Q ss_pred --------------------CHHHHHHHHHHHHhcC-cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 204 --------------------TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 204 --------------------~~~~~~~~~~~l~~~G-V~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
..++.+.+.+.+++.+ ++++.+++++++..++++ ..+.++++ ++.+|+||-|-|..
T Consensus 83 g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~v~~~~~-~~~adlvIgADG~~ 159 (374)
T PRK06617 83 ASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY--SIIKFDDK-QIKCNLLIICDGAN 159 (374)
T ss_pred CceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe--EEEEEcCC-EEeeCEEEEeCCCC
Confidence 0123444455555554 899999999999774444 45777776 89999999999976
Q ss_pred cCh
Q 013914 263 PLI 265 (434)
Q Consensus 263 p~~ 265 (434)
...
T Consensus 160 S~v 162 (374)
T PRK06617 160 SKV 162 (374)
T ss_pred chh
Confidence 554
No 364
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.77 E-value=0.00046 Score=66.56 Aligned_cols=100 Identities=20% Similarity=0.325 Sum_probs=73.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------------------------------------C--c---
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------------------------------------P--R--- 201 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~-------------------------------------~--~--- 201 (434)
-.|+|||+|+.|+-+|..|++.|.+|+++++.+... + .
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 85 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLET 85 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEEE
Confidence 479999999999999999999999999998764100 0 0
Q ss_pred --c------C---------------CHHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEE
Q 013914 202 --L------F---------------TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVV 257 (434)
Q Consensus 202 --~------~---------------~~~~~~~~~~~l~~~-GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~ 257 (434)
. + ...+.+.+.+.+++. |++++.+++++++...+++ ..+.+++|+++.+|+||.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~ 163 (391)
T PRK08020 86 WEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG--WELTLADGEEIQAKLVIG 163 (391)
T ss_pred EeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe--EEEEECCCCEEEeCEEEE
Confidence 0 0 012233444455555 9999999999999763333 467788888999999999
Q ss_pred cccCccCh
Q 013914 258 GVGGRPLI 265 (434)
Q Consensus 258 a~G~~p~~ 265 (434)
|.|.....
T Consensus 164 AdG~~S~v 171 (391)
T PRK08020 164 ADGANSQV 171 (391)
T ss_pred eCCCCchh
Confidence 99976643
No 365
>PRK10015 oxidoreductase; Provisional
Probab=97.75 E-value=0.00049 Score=67.00 Aligned_cols=98 Identities=20% Similarity=0.295 Sum_probs=71.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC------------------Ccc-----------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM------------------PRL----------------------- 202 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~------------------~~~----------------------- 202 (434)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+.+. +..
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEESA 85 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCCc
Confidence 479999999999999999999999999998764320 000
Q ss_pred ----C----------------CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 203 ----F----------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 203 ----~----------------~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
+ ...+.+.+.+.+++.|++++.+++|+.+.. +++.+..+.. ++.++.+|.||.|.|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~-~~~~v~~v~~-~~~~i~A~~VI~AdG~~ 163 (429)
T PRK10015 86 VTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVR-EGNKVTGVQA-GDDILEANVVILADGVN 163 (429)
T ss_pred eEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEE-eCCEEEEEEe-CCeEEECCEEEEccCcc
Confidence 0 011223456667788999999999999876 3455555554 44579999999999964
Q ss_pred c
Q 013914 263 P 263 (434)
Q Consensus 263 p 263 (434)
.
T Consensus 164 s 164 (429)
T PRK10015 164 S 164 (429)
T ss_pred h
Confidence 3
No 366
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.75 E-value=0.0001 Score=65.60 Aligned_cols=72 Identities=22% Similarity=0.276 Sum_probs=52.8
Q ss_pred CCeEEEEccCCccCCccCCHHHHHHHHHHHHhc------CcEEEcCCeEEEEEecCCCcEEEEEeCC--C--cEEECCEE
Q 013914 186 NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK------GIKIIKGTVAVGFTTNADGEVKEVKLKD--G--RTLEADIV 255 (434)
Q Consensus 186 g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~------GV~~~~~~~v~~i~~~~~g~v~~v~~~~--g--~~~~~D~v 255 (434)
|+.|---+|....+|. .-++.+.+...+++. -+++.++++|+.|.. ++|++.+|+.-| | ..+.+|.|
T Consensus 122 GHSvpRTHr~s~plpp--gfei~~~L~~~l~k~as~~pe~~ki~~nskvv~il~-n~gkVsgVeymd~sgek~~~~~~~V 198 (477)
T KOG2404|consen 122 GHSVPRTHRSSGPLPP--GFEIVKALSTRLKKKASENPELVKILLNSKVVDILR-NNGKVSGVEYMDASGEKSKIIGDAV 198 (477)
T ss_pred CCCCCcccccCCCCCC--chHHHHHHHHHHHHhhhcChHHHhhhhcceeeeeec-CCCeEEEEEEEcCCCCccceecCce
Confidence 5666556677777775 456666666666542 488999999999995 788888887643 4 35779999
Q ss_pred EEccc
Q 013914 256 VVGVG 260 (434)
Q Consensus 256 i~a~G 260 (434)
|+|+|
T Consensus 199 VlatG 203 (477)
T KOG2404|consen 199 VLATG 203 (477)
T ss_pred EEecC
Confidence 99998
No 367
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.74 E-value=6.5e-05 Score=66.66 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCcEEEcCCeEEEEEecCCC-cEEEEEe--CCCcEEECCEEEEcccCccC
Q 013914 207 IAAFYEGYYANKGIKIIKGTVAVGFTTNADG-EVKEVKL--KDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 207 ~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g-~v~~v~~--~~g~~~~~D~vi~a~G~~p~ 264 (434)
+...+-+.++..|-+++++-+++.+....++ --+-++. ..++++++..++-|+|....
T Consensus 198 v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sd 258 (453)
T KOG2665|consen 198 VTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSD 258 (453)
T ss_pred HHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHh
Confidence 3444445588889999999999998764332 1122333 34578999999999997543
No 368
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.73 E-value=0.00045 Score=66.91 Aligned_cols=101 Identities=20% Similarity=0.330 Sum_probs=72.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC-CccC------Cc--cCCH----------------------------
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE-PWCM------PR--LFTA---------------------------- 205 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~-~~~~------~~--~~~~---------------------------- 205 (434)
...|+|||+|+.|+-+|..|.+.|.+|+++++. +... .+ .+.+
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 357999999999999999999999999999975 1100 00 0000
Q ss_pred ----------------------------HHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEE
Q 013914 206 ----------------------------DIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVV 256 (434)
Q Consensus 206 ----------------------------~~~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi 256 (434)
.+.+.+.+.+.+ .||+++.+++++++..++++ ..+++++|+++.+|+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~lvI 161 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE--AWLTLDNGQALTAKLVV 161 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe--EEEEECCCCEEEeCEEE
Confidence 112233333444 47999999999999764333 56888899999999999
Q ss_pred EcccCccCh
Q 013914 257 VGVGGRPLI 265 (434)
Q Consensus 257 ~a~G~~p~~ 265 (434)
.|-|.....
T Consensus 162 gADG~~S~v 170 (405)
T PRK08850 162 GADGANSWL 170 (405)
T ss_pred EeCCCCChh
Confidence 999975443
No 369
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.72 E-value=0.0005 Score=69.33 Aligned_cols=103 Identities=24% Similarity=0.317 Sum_probs=72.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc----------------------------------c------
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------L------ 202 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~----------------------------------~------ 202 (434)
...|+|||+|+.|+-+|..|.+.|.+|+++++.+.+... .
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 102 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE 102 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence 358999999999999999999999999999876432100 0
Q ss_pred -------------------C-CHHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCc-EEECCEEEEccc
Q 013914 203 -------------------F-TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGR-TLEADIVVVGVG 260 (434)
Q Consensus 203 -------------------~-~~~~~~~~~~~l~~~-GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~-~~~~D~vi~a~G 260 (434)
+ ...+.+.+.+.+++. ++++++++++++++.++++....++..+|+ ++.+|.||.|.|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG 182 (547)
T PRK08132 103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDG 182 (547)
T ss_pred EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCC
Confidence 0 011223444555554 799999999999987544433334444564 689999999999
Q ss_pred CccCh
Q 013914 261 GRPLI 265 (434)
Q Consensus 261 ~~p~~ 265 (434)
.....
T Consensus 183 ~~S~v 187 (547)
T PRK08132 183 ARSPL 187 (547)
T ss_pred CCcHH
Confidence 76544
No 370
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.72 E-value=0.00063 Score=65.81 Aligned_cols=100 Identities=18% Similarity=0.248 Sum_probs=70.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc------------------------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------------ 201 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~------------------------------------------ 201 (434)
++|+|||+|+.|+-+|..|++.|.+|+++++.+.+...
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 68999999999999999999999999999876432100
Q ss_pred -cC--------------------CHHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEe---CCCcEEECCEEE
Q 013914 202 -LF--------------------TADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKL---KDGRTLEADIVV 256 (434)
Q Consensus 202 -~~--------------------~~~~~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~g~v~~v~~---~~g~~~~~D~vi 256 (434)
.+ -.++.+.+.+.+.+ .+++++++++++++..++++ ..+++ .+++++++|+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~--v~v~~~~~~~~~~~~adlvI 160 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS--ITATIIRTNSVETVSAAYLI 160 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc--eEEEEEeCCCCcEEecCEEE
Confidence 00 01222334444444 47999999999999874333 34444 344679999999
Q ss_pred EcccCccCh
Q 013914 257 VGVGGRPLI 265 (434)
Q Consensus 257 ~a~G~~p~~ 265 (434)
-|-|....+
T Consensus 161 gADG~~S~v 169 (400)
T PRK06475 161 ACDGVWSML 169 (400)
T ss_pred ECCCccHhH
Confidence 999965433
No 371
>PRK09897 hypothetical protein; Provisional
Probab=97.71 E-value=0.00065 Score=67.32 Aligned_cols=99 Identities=11% Similarity=0.078 Sum_probs=66.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCccCCc----------------------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPR---------------------------------------- 201 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g--~~v~lv~~~~~~~~~---------------------------------------- 201 (434)
++|+|||+|+.|+-++..|.+.+ .+|+++++.+.+...
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 47999999999999999998764 479999885432110
Q ss_pred --------------c-----CCHHHHH---HHHHHHHhcC--cEEEcCCeEEEEEecCCCcEEEEEeCC-CcEEECCEEE
Q 013914 202 --------------L-----FTADIAA---FYEGYYANKG--IKIIKGTVAVGFTTNADGEVKEVKLKD-GRTLEADIVV 256 (434)
Q Consensus 202 --------------~-----~~~~~~~---~~~~~l~~~G--V~~~~~~~v~~i~~~~~g~v~~v~~~~-g~~~~~D~vi 256 (434)
+ +...+.+ .+.+.+.+.| +.++.+++|+++...+++ ..+.+.+ |..+.+|.||
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g--~~V~t~~gg~~i~aD~VV 159 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAG--VMLATNQDLPSETFDLAV 159 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCE--EEEEECCCCeEEEcCEEE
Confidence 0 0000111 1222334555 788889999999874333 4567655 4679999999
Q ss_pred EcccCccC
Q 013914 257 VGVGGRPL 264 (434)
Q Consensus 257 ~a~G~~p~ 264 (434)
+|+|..++
T Consensus 160 LAtGh~~p 167 (534)
T PRK09897 160 IATGHVWP 167 (534)
T ss_pred ECCCCCCC
Confidence 99996543
No 372
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.71 E-value=0.00057 Score=67.94 Aligned_cols=97 Identities=18% Similarity=0.257 Sum_probs=70.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC------------------Ccc--C---------------------
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM------------------PRL--F--------------------- 203 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~------------------~~~--~--------------------- 203 (434)
.++|||+|+.|+++|..+++.|.+|.++++..... ... +
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s 81 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS 81 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence 48999999999999999999999999998652110 000 0
Q ss_pred ------------CH-HHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 204 ------------TA-DIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 204 ------------~~-~~~~~~~~~l~~~-GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
|. .+...+.+.+++. +++++.+ .+..+..++++.+.+|.+.+|..+.||.||+|+|.-
T Consensus 82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtf 153 (617)
T TIGR00136 82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTF 153 (617)
T ss_pred CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCcc
Confidence 00 1123445556665 7888765 566765534678889999999999999999999954
No 373
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.70 E-value=0.00011 Score=75.34 Aligned_cols=92 Identities=21% Similarity=0.208 Sum_probs=68.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------Cc-cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~-------~~-~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~ 233 (434)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+.+. +. .++.++.+...+.+++.|+++++++.+. +.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~d- 269 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-RD- 269 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-Cc-
Confidence 35799999999999999999999999999999877641 21 1456666777778889999999887541 11
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013914 234 NADGEVKEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 234 ~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~ 264 (434)
+.+.+. ...+|.|++|+|..+.
T Consensus 270 --------v~~~~~-~~~~DaVilAtGa~~~ 291 (652)
T PRK12814 270 --------ITLEEL-QKEFDAVLLAVGAQKA 291 (652)
T ss_pred --------cCHHHH-HhhcCEEEEEcCCCCC
Confidence 112221 2359999999997653
No 374
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.70 E-value=0.00011 Score=75.51 Aligned_cols=91 Identities=21% Similarity=0.249 Sum_probs=67.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------C-ccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------P-RLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~-------~-~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~ 233 (434)
.+++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. + ..++.++.....+.+++.|++++.++.+..-
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 403 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKD-- 403 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCc--
Confidence 36799999999999999999999999999999876532 1 1145667666677888999999999865210
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 234 NADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 234 ~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
+.+.+. ...+|.|++|+|..+
T Consensus 404 --------i~~~~~-~~~~DavilAtGa~~ 424 (654)
T PRK12769 404 --------ISLESL-LEDYDAVFVGVGTYR 424 (654)
T ss_pred --------CCHHHH-HhcCCEEEEeCCCCC
Confidence 111111 236999999999643
No 375
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.69 E-value=0.00016 Score=73.47 Aligned_cols=99 Identities=16% Similarity=0.125 Sum_probs=68.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhh-Hh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEW-YK 83 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 83 (434)
..+++|||||+.|+-.|..|++.|.+ |++|++.+... +. + ...+ ....... ++
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~e---VTLIe~~~~ll---~~-----~----d~ei-----------s~~l~~~ll~ 365 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSE---VVSFEYSPQLL---PL-----L----DADV-----------AKYFERVFLK 365 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCe---EEEEeccCccc---cc-----C----CHHH-----------HHHHHHHHhh
Confidence 35899999999999999999998876 99999976421 00 0 0000 0112222 34
Q ss_pred hcCcEEEcCCeeEEEECCCC--EEE--cc-------CC--------cEEEcceEEEecCCCcccc
Q 013914 84 EKGIELILSTEIVRADIASK--TLL--SA-------TG--------LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~--~v~--~~-------~~--------~~~~~d~lvlAtG~~~~~~ 129 (434)
+.|++++.++.+..+..+.. .+. +. ++ +++.+|.+++|+|-+|+..
T Consensus 366 ~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~ 430 (659)
T PTZ00153 366 SKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTN 430 (659)
T ss_pred cCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCc
Confidence 67999999999999876542 232 21 11 2699999999999998754
No 376
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.69 E-value=0.0002 Score=69.12 Aligned_cols=92 Identities=13% Similarity=0.150 Sum_probs=61.6
Q ss_pred CCCcEEEECCCHHHHHHHHHH-HhCCCeEEEEccCCccCCcc---------CCHHHHHHHHHHHHhcCcEEEcCCeEEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAAL-KINNIDVSMVYPEPWCMPRL---------FTADIAAFYEGYYANKGIKIIKGTVAVGF 231 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l-~~~g~~v~lv~~~~~~~~~~---------~~~~~~~~~~~~l~~~GV~~~~~~~v~~i 231 (434)
.+++|+|||+|+.|+.+|..| .+.|.+|+++++.+.+..-. .-+.+.+.+...+...+++++.+..+-.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~- 116 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV- 116 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC-
Confidence 478999999999999999965 46799999999988763210 1124455555566678888875433211
Q ss_pred EecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013914 232 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 232 ~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~ 264 (434)
.++.++= .-.+|.||+|+|..+.
T Consensus 117 ---------Dvt~eeL-~~~YDAVIlAtGA~~l 139 (506)
T PTZ00188 117 ---------DLKMEEL-RNHYNCVIFCCGASEV 139 (506)
T ss_pred ---------ccCHHHH-HhcCCEEEEEcCCCCC
Confidence 1111111 2268999999997653
No 377
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.69 E-value=0.0002 Score=64.14 Aligned_cols=37 Identities=24% Similarity=0.425 Sum_probs=33.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
+..+||+|||+|.|||-||.+|+..|.+ |+++|++..
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~---V~ildQEge 39 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKR---VLILDQEGE 39 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCce---EEEEccccc
Confidence 4468999999999999999999999988 999999865
No 378
>PLN02546 glutathione reductase
Probab=97.69 E-value=0.00016 Score=72.24 Aligned_cols=99 Identities=19% Similarity=0.181 Sum_probs=69.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+|+|||||+.|+-.|..|++.+.+ |+|+++.+... + .+.. .......+.+++
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~---Vtlv~~~~~il---~----------------~~d~----~~~~~l~~~L~~ 305 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSD---VHVFIRQKKVL---R----------------GFDE----EVRDFVAEQMSL 305 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCe---EEEEEeccccc---c----------------ccCH----HHHHHHHHHHHH
Confidence 46899999999999999999998866 99999875311 0 0000 001233466778
Q ss_pred cCcEEEcCCeeEEEECC-CCE--EEccCCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIA-SKT--LLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~-~~~--v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.++... ... +...++....+|.+++|+|.+|+..
T Consensus 306 ~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 306 RGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred CCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCC
Confidence 89999999888888643 232 3333444445899999999998754
No 379
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00037 Score=58.90 Aligned_cols=97 Identities=15% Similarity=0.157 Sum_probs=72.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEc--------------------cCCccCCccCCHHHHHHHHHHHHhcCcEE
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVY--------------------PEPWCMPRLFTADIAAFYEGYYANKGIKI 222 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~--------------------~~~~~~~~~~~~~~~~~~~~~l~~~GV~~ 222 (434)
..+++|||+|+.+.-.|-.+++...+..+++ .-|.|......+++.+.+++..++.|.++
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i 87 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI 87 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence 3589999999999999999988765544443 23444445567899999999999999999
Q ss_pred EcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 223 IKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 223 ~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
+..+ |.+++. .++...+.+ +.+.+.+|.||+|||...
T Consensus 88 ~tEt-Vskv~~--sskpF~l~t-d~~~v~~~avI~atGAsA 124 (322)
T KOG0404|consen 88 ITET-VSKVDL--SSKPFKLWT-DARPVTADAVILATGASA 124 (322)
T ss_pred eeee-hhhccc--cCCCeEEEe-cCCceeeeeEEEecccce
Confidence 8775 777766 344445555 445789999999999543
No 380
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.67 E-value=0.00055 Score=73.58 Aligned_cols=101 Identities=24% Similarity=0.287 Sum_probs=70.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccC----------CHHHHHHHHHHHHhc-CcEEEcCCeEEEE
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF----------TADIAAFYEGYYANK-GIKIIKGTVAVGF 231 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~----------~~~~~~~~~~~l~~~-GV~~~~~~~v~~i 231 (434)
...|+|||+|+.|+.+|..+.+.|.+|++++..+.+..... ..++...+.+.+++. +|+++.++.|..+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i 242 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY 242 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence 46899999999999999999999999999998765432111 123334455556655 5999999998887
Q ss_pred EecCCCcEEEEE-eC-------CC------cEEECCEEEEcccCccCh
Q 013914 232 TTNADGEVKEVK-LK-------DG------RTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 232 ~~~~~g~v~~v~-~~-------~g------~~~~~D~vi~a~G~~p~~ 265 (434)
.. ++.+..+. .. ++ .++.+|.||+|||..|..
T Consensus 243 ~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~ 288 (985)
T TIGR01372 243 YD--HNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERP 288 (985)
T ss_pred ec--CCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcC
Confidence 53 22222221 00 11 158899999999987654
No 381
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.67 E-value=6e-05 Score=71.23 Aligned_cols=35 Identities=26% Similarity=0.466 Sum_probs=31.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
+||+|||||++|+++|..|++.|.+ |+|+|+++..
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~---V~viEk~~~i 36 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKR---VLVVEKRNHI 36 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCCC
Confidence 6999999999999999999998876 9999997653
No 382
>PLN02985 squalene monooxygenase
Probab=97.66 E-value=5.9e-05 Score=74.85 Aligned_cols=36 Identities=25% Similarity=0.446 Sum_probs=32.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
..+||+|||||++|+++|..|++.|.+ |+|+|+...
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~G~~---V~vlEr~~~ 77 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKDGRR---VHVIERDLR 77 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHcCCe---EEEEECcCC
Confidence 468999999999999999999999987 999999753
No 383
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.65 E-value=0.0007 Score=68.12 Aligned_cols=100 Identities=25% Similarity=0.332 Sum_probs=71.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc----------------------------------c------
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------L------ 202 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~----------------------------------~------ 202 (434)
...|+|||+|+.|+-+|..|.+.|.+|+++++.+.+... +
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~ 89 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR 89 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence 468999999999999999999999999999876432100 0
Q ss_pred ----CC-----------------HHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeC--CC--cEEECCEEE
Q 013914 203 ----FT-----------------ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLK--DG--RTLEADIVV 256 (434)
Q Consensus 203 ----~~-----------------~~~~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~g~v~~v~~~--~g--~~~~~D~vi 256 (434)
++ +.+.+.+.+.+.+ .|+++++++++++++.++++ ..+++. +| +++++|.||
T Consensus 90 ~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~--v~v~~~~~~G~~~~i~ad~vV 167 (538)
T PRK06183 90 CLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDG--VTVTLTDADGQRETVRARYVV 167 (538)
T ss_pred EEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCe--EEEEEEcCCCCEEEEEEEEEE
Confidence 00 1123344444555 48999999999999875555 344554 56 478999999
Q ss_pred EcccCccC
Q 013914 257 VGVGGRPL 264 (434)
Q Consensus 257 ~a~G~~p~ 264 (434)
-|.|.+..
T Consensus 168 gADG~~S~ 175 (538)
T PRK06183 168 GCDGANSF 175 (538)
T ss_pred ecCCCchh
Confidence 99996543
No 384
>PLN02268 probable polyamine oxidase
Probab=97.64 E-value=6.2e-05 Score=73.67 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=34.4
Q ss_pred CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 219 GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 219 GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
+++++++++|++|...+++ ..|++.+|+++.+|.||+|+..
T Consensus 210 ~~~i~~~~~V~~i~~~~~~--v~v~~~~g~~~~ad~VIva~P~ 250 (435)
T PLN02268 210 GLDIRLNHRVTKIVRRYNG--VKVTVEDGTTFVADAAIIAVPL 250 (435)
T ss_pred cCceeCCCeeEEEEEcCCc--EEEEECCCcEEEcCEEEEecCH
Confidence 6789999999999875444 4678888888999999999863
No 385
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.64 E-value=6.8e-05 Score=71.14 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=31.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.||+|||||++|+.+|+.|++.|++ |+|+|+.+.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~---V~LiE~rp~ 36 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVP---VELYEMRPV 36 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCc---EEEEEccCc
Confidence 5999999999999999999999987 999997654
No 386
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.63 E-value=0.00032 Score=66.81 Aligned_cols=93 Identities=24% Similarity=0.375 Sum_probs=63.8
Q ss_pred EEEECCCHHHHHHHHHHHhC--CCeEEEEccCCccCCc----cCCHHHH-------------------------------
Q 013914 166 AVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPR----LFTADIA------------------------------- 208 (434)
Q Consensus 166 v~ViG~g~~~~e~a~~l~~~--g~~v~lv~~~~~~~~~----~~~~~~~------------------------------- 208 (434)
++|||+|+.|+.+|..|.+. |.+|.++++.+.+.+. .+..++.
T Consensus 2 viIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~~ 81 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLKT 81 (370)
T ss_pred EEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcCC
Confidence 78999999999999999987 9999999987643321 0111111
Q ss_pred -------HHHHH-HHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013914 209 -------AFYEG-YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 209 -------~~~~~-~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~ 264 (434)
..+.+ .+++.+..++++++|.+++. ++ +++.+|+++.+|.||.|.|.++.
T Consensus 82 ~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~--~~----v~l~dg~~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 82 AYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDA--DG----VDLAPGTRINARSVIDCRGFKPS 139 (370)
T ss_pred CceEEEHHHHHHHHHHhhcccEEecCEEEEEeC--CE----EEECCCCEEEeeEEEECCCCCCC
Confidence 01111 12332444777888888843 32 55588999999999999997764
No 387
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.63 E-value=0.00042 Score=67.37 Aligned_cols=98 Identities=19% Similarity=0.243 Sum_probs=68.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CeEEEEccCCccCCcc----CCH-------------HH-------------------
Q 013914 165 KAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWCMPRL----FTA-------------DI------------------- 207 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g-~~v~lv~~~~~~~~~~----~~~-------------~~------------------- 207 (434)
+|+|||+|+.|+-+|..|.+.| .+|+++++.+.+.... +.+ .+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6899999999999999999998 5999999875532100 000 00
Q ss_pred ----------------------HHHHHHHHHh--cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 208 ----------------------AAFYEGYYAN--KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 208 ----------------------~~~~~~~l~~--~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
...+.+.|.+ ..+.++++++|++++.++++ ..+.+++|+++++|.||.|.|...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEE--VQVLFTDGTEYRCDLLIGADGIKS 159 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCc--EEEEEcCCCEEEeeEEEECCCccH
Confidence 0111122222 14567889999999874444 568888999999999999999654
Q ss_pred C
Q 013914 264 L 264 (434)
Q Consensus 264 ~ 264 (434)
.
T Consensus 160 ~ 160 (414)
T TIGR03219 160 A 160 (414)
T ss_pred H
Confidence 3
No 388
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.63 E-value=4.6e-05 Score=74.13 Aligned_cols=95 Identities=21% Similarity=0.354 Sum_probs=26.9
Q ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc--------------------------------------------
Q 013914 166 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-------------------------------------------- 201 (434)
Q Consensus 166 v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~-------------------------------------------- 201 (434)
|+|||+|+.|+-+|..+++.|.+|.|+++.+.+...
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~~ 81 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYGW 81 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST--------------
T ss_pred EEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccccccc
Confidence 799999999999999999999999999987553100
Q ss_pred ----cCCHH-HHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC---CcEEECCEEEEcccC
Q 013914 202 ----LFTAD-IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---GRTLEADIVVVGVGG 261 (434)
Q Consensus 202 ----~~~~~-~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~---g~~~~~D~vi~a~G~ 261 (434)
.+++. ....+.+.+++.||++++++.+.++.. +++++.+|.+.+ ..++.++.+|-|||.
T Consensus 82 ~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~-~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 82 VSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIR-DGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp --------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 01111 122455667788999999999999987 466788888765 457899999999994
No 389
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.61 E-value=6.3e-05 Score=70.97 Aligned_cols=82 Identities=29% Similarity=0.486 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEe---CCC--cEEECCEEEEcccCccChhhhhccccc--cCC
Q 013914 206 DIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKL---KDG--RTLEADIVVVGVGGRPLISLFKGQVAE--NKG 277 (434)
Q Consensus 206 ~~~~~~~~~l~~~-GV~~~~~~~v~~i~~~~~g~v~~v~~---~~g--~~~~~D~vi~a~G~~p~~~~~~~~~~~--~~g 277 (434)
.+.+.+.+.+++. |++++++++|+.++...+|. ..|.+ .+| .++.++.|++..|--...-+-+.++.. .-|
T Consensus 182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~-W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi~e~~gyg 260 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGR-WEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGIPEGKGYG 260 (488)
T ss_pred HHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCC-EEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCChhhcccC
Confidence 4455555556665 99999999999999866663 23433 223 578999999999965433333455543 223
Q ss_pred cEEe-CCCCCCC
Q 013914 278 GIET-DDFFKTS 288 (434)
Q Consensus 278 ~i~v-d~~~~t~ 288 (434)
+..| -.++++.
T Consensus 261 gfPVsG~fl~~~ 272 (488)
T PF06039_consen 261 GFPVSGQFLRCK 272 (488)
T ss_pred CCcccceEEecC
Confidence 3333 3455554
No 390
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.61 E-value=0.00031 Score=69.63 Aligned_cols=135 Identities=17% Similarity=0.146 Sum_probs=81.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+|+|||+|.+|+++|..|+++|.+ |+++|+.+... .....+.+++
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~---V~~~d~~~~~~------------------------------~~~~~~~l~~ 62 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGAR---VTVVDDGDDER------------------------------HRALAAILEA 62 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCchhh------------------------------hHHHHHHHHH
Confidence 46899999999999999999999986 99999764200 0122345667
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhC-CC
Q 013914 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAK-KN 163 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~-~~ 163 (434)
.|+++..+..+. ....+|.+|+++|..|..|. +......++-.....+- +....... +.
T Consensus 63 ~gv~~~~~~~~~--------------~~~~~D~Vv~s~Gi~~~~~~---~~~a~~~gi~v~~~~e~---~~~~~~~~~~~ 122 (480)
T PRK01438 63 LGATVRLGPGPT--------------LPEDTDLVVTSPGWRPDAPL---LAAAADAGIPVWGEVEL---AWRLRDPDRPA 122 (480)
T ss_pred cCCEEEECCCcc--------------ccCCCCEEEECCCcCCCCHH---HHHHHHCCCeecchHHH---HHHhhhccCCC
Confidence 799988874332 02458999999999887664 22222223322222221 11222110 12
Q ss_pred CcEEEECCC---HHHHHHHHHHHhCCCeEEEE
Q 013914 164 GKAVVVGGG---YIGLELSAALKINNIDVSMV 192 (434)
Q Consensus 164 ~~v~ViG~g---~~~~e~a~~l~~~g~~v~lv 192 (434)
+.+.|-|+. -+..-++..|...|.++...
T Consensus 123 ~~I~VTGTnGKTTTt~mi~~iL~~~g~~~~~~ 154 (480)
T PRK01438 123 PWLAVTGTNGKTTTVQMLASMLRAAGLRAAAV 154 (480)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHHHcCCCeEEE
Confidence 345565542 23445666777777766544
No 391
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.60 E-value=0.0009 Score=64.46 Aligned_cols=99 Identities=31% Similarity=0.342 Sum_probs=71.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc-----------------c-----------------------
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-----------------L----------------------- 202 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~-----------------~----------------------- 202 (434)
...|+|||+|+.|+-+|..|++.|.+|+++++.+..... .
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~ 86 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRL 86 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCC
Confidence 347999999999999999999999999999986432000 0
Q ss_pred -------C---------------CHHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcc
Q 013914 203 -------F---------------TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGV 259 (434)
Q Consensus 203 -------~---------------~~~~~~~~~~~l~~~-GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~ 259 (434)
+ ...+.+.+.+.+.+. ++. +.+++|.+++.++++ ..+++++|+++.+|.||.|.
T Consensus 87 ~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~Ad 163 (388)
T PRK07494 87 IRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDE--VTVTLADGTTLSARLVVGAD 163 (388)
T ss_pred CCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCe--EEEEECCCCEEEEeEEEEec
Confidence 0 012234444555555 455 779999999764443 45788888899999999999
Q ss_pred cCccC
Q 013914 260 GGRPL 264 (434)
Q Consensus 260 G~~p~ 264 (434)
|....
T Consensus 164 G~~S~ 168 (388)
T PRK07494 164 GRNSP 168 (388)
T ss_pred CCCch
Confidence 97653
No 392
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.60 E-value=0.0011 Score=64.95 Aligned_cols=63 Identities=17% Similarity=0.122 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC--CCc--EEECCEEEEccc-CccChhhhh
Q 013914 207 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DGR--TLEADIVVVGVG-GRPLISLFK 269 (434)
Q Consensus 207 ~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~--~g~--~~~~D~vi~a~G-~~p~~~~~~ 269 (434)
+.+.+.+.+++.|++++++++++++..++++++.++... +++ .+.++.||+|+| +..|.++..
T Consensus 132 l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m~~ 199 (439)
T TIGR01813 132 IVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEMIA 199 (439)
T ss_pred HHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHHHH
Confidence 344555667788999999999999987556777766553 443 468999999999 566665553
No 393
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.59 E-value=0.00087 Score=64.69 Aligned_cols=99 Identities=20% Similarity=0.316 Sum_probs=71.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhC---CCeEEEEccCC-c--cCCc--------------------cCC-------------
Q 013914 164 GKAVVVGGGYIGLELSAALKIN---NIDVSMVYPEP-W--CMPR--------------------LFT------------- 204 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~---g~~v~lv~~~~-~--~~~~--------------------~~~------------- 204 (434)
-.|+|||+|+.|+-+|..|++. |.+|+++++.. . ..+. .++
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~ 83 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHIH 83 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEEE
Confidence 4799999999999999999998 99999999831 1 0000 000
Q ss_pred ----------------------------HHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEE
Q 013914 205 ----------------------------ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIV 255 (434)
Q Consensus 205 ----------------------------~~~~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~v 255 (434)
.++.+.+.+.+++ .|++++.+++++++...+++ ..+++.+|.++.+|.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~v 161 (395)
T PRK05732 84 VSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGS--VRVTLDDGETLTGRLL 161 (395)
T ss_pred EecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEE
Confidence 0112334444444 47999999999999763333 4577888888999999
Q ss_pred EEcccCccC
Q 013914 256 VVGVGGRPL 264 (434)
Q Consensus 256 i~a~G~~p~ 264 (434)
|.|.|....
T Consensus 162 I~AdG~~S~ 170 (395)
T PRK05732 162 VAADGSHSA 170 (395)
T ss_pred EEecCCChh
Confidence 999997654
No 394
>PRK06185 hypothetical protein; Provisional
Probab=97.59 E-value=0.0012 Score=64.05 Aligned_cols=100 Identities=23% Similarity=0.346 Sum_probs=70.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc----cC-----------------------------------
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----LF----------------------------------- 203 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~----~~----------------------------------- 203 (434)
...|+|||+|+.|+-+|..|++.|.+|+++++.+.+... .+
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~ 85 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR 85 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence 357999999999999999999999999999976421000 00
Q ss_pred ---------------------CHHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEE--eCCCc-EEECCEEEEc
Q 013914 204 ---------------------TADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVK--LKDGR-TLEADIVVVG 258 (434)
Q Consensus 204 ---------------------~~~~~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~g~v~~v~--~~~g~-~~~~D~vi~a 258 (434)
...+.+.+.+.+++ .|++++.++++.++..+ ++.+..+. ..+|+ ++.+|.||.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g~~~i~a~~vI~A 164 (407)
T PRK06185 86 TVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDGPGEIRADLVVGA 164 (407)
T ss_pred EEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCCcEEEEeCEEEEC
Confidence 01223344444444 48999999999999863 44444343 44664 7999999999
Q ss_pred ccCcc
Q 013914 259 VGGRP 263 (434)
Q Consensus 259 ~G~~p 263 (434)
.|...
T Consensus 165 dG~~S 169 (407)
T PRK06185 165 DGRHS 169 (407)
T ss_pred CCCch
Confidence 99754
No 395
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.58 E-value=8.1e-05 Score=74.89 Aligned_cols=36 Identities=22% Similarity=0.440 Sum_probs=33.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
...+||||||+|.|||+||..+++.|.+ |+||||.+
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~---VivlEK~~ 37 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADAGKR---VLLLDQEN 37 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHCCCe---EEEEeCCC
Confidence 4579999999999999999999999987 99999987
No 396
>PTZ00367 squalene epoxidase; Provisional
Probab=97.56 E-value=8e-05 Score=74.47 Aligned_cols=35 Identities=23% Similarity=0.557 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
..+||+|||||++|+++|..|++.|.+ |+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~---V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRK---VLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCE---EEEEcccc
Confidence 468999999999999999999999987 99999975
No 397
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.56 E-value=0.00011 Score=69.11 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=34.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~ 44 (434)
...+|||||||.|||+||.+|.+.|+.+ ++|+|..+..+
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~--~~IlEa~dRIG 58 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFID--VLILEASDRIG 58 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCce--EEEEEeccccC
Confidence 3578999999999999999999888766 99999998754
No 398
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.53 E-value=0.0001 Score=74.36 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
++.+|+|||||++||++|..|++.|++ |+|+|+.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~---V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFD---VLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCe---EEEEeccc
Confidence 458999999999999999999999987 99999975
No 399
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.53 E-value=0.0013 Score=62.77 Aligned_cols=96 Identities=28% Similarity=0.336 Sum_probs=70.7
Q ss_pred EEEECCCHHHHHHHHHH--HhCCCeEEEEccCCcc--CCcc----C----------------------------------
Q 013914 166 AVVVGGGYIGLELSAAL--KINNIDVSMVYPEPWC--MPRL----F---------------------------------- 203 (434)
Q Consensus 166 v~ViG~g~~~~e~a~~l--~~~g~~v~lv~~~~~~--~~~~----~---------------------------------- 203 (434)
++|||+|+.|+-+|..| .+.|.+|.++++.+.. .+.. +
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~Y 81 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYPY 81 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccce
Confidence 78999999999999999 7789999999876554 1100 0
Q ss_pred ----CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013914 204 ----TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 204 ----~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~ 264 (434)
...+.+.+.+.+.+.+ ....+..|.+|+..++ ...+.+++|+++.++.||-|.|..+.
T Consensus 82 ~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~--~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 82 CMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETGD--GVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred EEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecCc--eEEEEECCCCEEEeeEEEECCCcccc
Confidence 0123445555666445 4667788999987433 35788999999999999999996544
No 400
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.53 E-value=0.00011 Score=72.69 Aligned_cols=51 Identities=22% Similarity=0.332 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEccc
Q 013914 206 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 260 (434)
Q Consensus 206 ~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G 260 (434)
.+.+.+.+.+++ ++++++++|++|+..+++ ..+.+.+|+++.+|.||+++.
T Consensus 227 ~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~--~~v~~~~g~~~~ad~VI~a~p 277 (463)
T PRK12416 227 TIIDRLEEVLTE--TVVKKGAVTTAVSKQGDR--YEISFANHESIQADYVVLAAP 277 (463)
T ss_pred HHHHHHHHhccc--ccEEcCCEEEEEEEcCCE--EEEEECCCCEEEeCEEEECCC
Confidence 344555554543 579999999999874443 467778888899999999987
No 401
>PRK02106 choline dehydrogenase; Validated
Probab=97.53 E-value=0.00011 Score=74.33 Aligned_cols=39 Identities=18% Similarity=0.442 Sum_probs=35.5
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHH-cCCCCCcEEEEeCCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAK-QGVKPGELAIISKEAV 42 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~-~g~~~~~V~vie~~~~ 42 (434)
||...+|+||||+|.||+.+|.+|++ .|.+ |+|||+.+.
T Consensus 1 ~~~~~~D~iIVG~G~aG~vvA~rLae~~g~~---VlvlEaG~~ 40 (560)
T PRK02106 1 MTTMEYDYIIIGAGSAGCVLANRLSEDPDVS---VLLLEAGGP 40 (560)
T ss_pred CCCCcCcEEEECCcHHHHHHHHHHHhCCCCe---EEEecCCCc
Confidence 78888999999999999999999999 6776 999999853
No 402
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.00011 Score=70.22 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=33.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~ 44 (434)
++|+|+|||.|||+||.+|+++|++ |+|+|+++..+
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~---vt~~ea~~~~G 36 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYD---VTLYEARDRLG 36 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCc---eEEEeccCccC
Confidence 3799999999999999999999987 99999998754
No 403
>PRK11445 putative oxidoreductase; Provisional
Probab=97.52 E-value=0.0017 Score=61.53 Aligned_cols=96 Identities=17% Similarity=0.275 Sum_probs=66.6
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC--------CccCCH-------------------------------
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--------PRLFTA------------------------------- 205 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~--------~~~~~~------------------------------- 205 (434)
.|+|||+|+.|+-+|..|++. .+|+++++.+... ...+.+
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~ 81 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL 81 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence 689999999999999999999 9999999775321 000000
Q ss_pred ------------------HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe-CCCc--EEECCEEEEcccCccC
Q 013914 206 ------------------DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL-KDGR--TLEADIVVVGVGGRPL 264 (434)
Q Consensus 206 ------------------~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~-~~g~--~~~~D~vi~a~G~~p~ 264 (434)
++.+.+.+ ..+.|++++.++.++++...+++ ..+.+ .+|+ ++.+|.||.|.|....
T Consensus 82 ~~~~~~~~~~~~~~i~R~~~~~~L~~-~~~~gv~v~~~~~v~~i~~~~~~--~~v~~~~~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 82 ANSLTRNYQRSYINIDRHKFDLWLKS-LIPASVEVYHNSLCRKIWREDDG--YHVIFRADGWEQHITARYLVGADGANSM 158 (351)
T ss_pred cccchhhcCCCcccccHHHHHHHHHH-HHhcCCEEEcCCEEEEEEEcCCE--EEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence 01111222 23468999999999999874444 34554 5664 6899999999997543
No 404
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.52 E-value=0.0015 Score=53.92 Aligned_cols=42 Identities=31% Similarity=0.483 Sum_probs=32.7
Q ss_pred cCcEEE-cCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 218 KGIKII-KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 218 ~GV~~~-~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
.|+++. ...+|..+...+++ ..+.+.+|..+.+|.||+|+|.
T Consensus 113 ~~i~v~~~~~~V~~i~~~~~~--~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 113 AGITVRHVRAEVVDIRRDDDG--YRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCcEEEEEeeEEEEEEEcCCc--EEEEECCCCEEEeCEEEECCCC
Confidence 355543 35588889885555 5788899999999999999995
No 405
>PRK06996 hypothetical protein; Provisional
Probab=97.50 E-value=0.0014 Score=63.24 Aligned_cols=97 Identities=24% Similarity=0.320 Sum_probs=72.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCC----CeEEEEccCCccCC----c---------------------------------
Q 013914 163 NGKAVVVGGGYIGLELSAALKINN----IDVSMVYPEPWCMP----R--------------------------------- 201 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g----~~v~lv~~~~~~~~----~--------------------------------- 201 (434)
...|+|||+|+.|+-+|..|++.| .+|+++++.+..-. +
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~ 90 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQR 90 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEecC
Confidence 458999999999999999999986 47999987531100 0
Q ss_pred -c-------------------C-CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC---cEEECCEEEE
Q 013914 202 -L-------------------F-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG---RTLEADIVVV 257 (434)
Q Consensus 202 -~-------------------~-~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g---~~~~~D~vi~ 257 (434)
. . ...+.+.+.+.+++.|++++.++++.+++.+.++ ..+++.++ +++.+|+||-
T Consensus 91 ~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~--v~v~~~~~~g~~~i~a~lvIg 168 (398)
T PRK06996 91 GHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADG--VTLALGTPQGARTLRARIAVQ 168 (398)
T ss_pred CCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe--EEEEECCCCcceEEeeeEEEE
Confidence 0 0 1245667777788889999999999999764444 45667654 5899999999
Q ss_pred cccC
Q 013914 258 GVGG 261 (434)
Q Consensus 258 a~G~ 261 (434)
|-|.
T Consensus 169 ADG~ 172 (398)
T PRK06996 169 AEGG 172 (398)
T ss_pred CCCC
Confidence 9995
No 406
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.46 E-value=0.0018 Score=63.34 Aligned_cols=102 Identities=23% Similarity=0.341 Sum_probs=73.3
Q ss_pred cEEEECCCHHHHHHHHHHHh----CCCeEEEEccCC--ccC------------Ccc--CC--------------------
Q 013914 165 KAVVVGGGYIGLELSAALKI----NNIDVSMVYPEP--WCM------------PRL--FT-------------------- 204 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~----~g~~v~lv~~~~--~~~------------~~~--~~-------------------- 204 (434)
.|+|||+|+.|+-+|..|++ .|.+|+++++.+ ... .+. +.
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~~ 81 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSDR 81 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhhc
Confidence 58999999999999999998 799999999832 110 000 00
Q ss_pred -----------------------------------HHHHHHHHHHHHhcC---cEEEcCCeEEEEEec-----CCCcEEE
Q 013914 205 -----------------------------------ADIAAFYEGYYANKG---IKIIKGTVAVGFTTN-----ADGEVKE 241 (434)
Q Consensus 205 -----------------------------------~~~~~~~~~~l~~~G---V~~~~~~~v~~i~~~-----~~g~v~~ 241 (434)
..+.+.+.+.+++.+ +++++++++.+++.. +++....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~ 161 (437)
T TIGR01989 82 IQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVH 161 (437)
T ss_pred CCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceE
Confidence 112344455556654 999999999999741 2233357
Q ss_pred EEeCCCcEEECCEEEEcccCccChh
Q 013914 242 VKLKDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 242 v~~~~g~~~~~D~vi~a~G~~p~~~ 266 (434)
+++.+|+++.+|+||-|-|....+.
T Consensus 162 v~~~~g~~i~a~llVgADG~~S~vR 186 (437)
T TIGR01989 162 ITLSDGQVLYTKLLIGADGSNSNVR 186 (437)
T ss_pred EEEcCCCEEEeeEEEEecCCCChhH
Confidence 8889999999999999999765543
No 407
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.45 E-value=0.0004 Score=70.22 Aligned_cols=91 Identities=20% Similarity=0.211 Sum_probs=66.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC--------ccCCHHHHHHHHHHHHhcCcEEEcCCeE-EEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--------RLFTADIAAFYEGYYANKGIKIIKGTVA-VGFT 232 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~--------~~~~~~~~~~~~~~l~~~GV~~~~~~~v-~~i~ 232 (434)
.+++|+|||+|++|+.+|..|.+.|.+|+++++.+.+.. ..++.++.+.-.+.+++.|++++.++.+ ..+.
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~ 215 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDIT 215 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCC
Confidence 578999999999999999999999999999997765421 1135556665566788899999988765 2221
Q ss_pred ecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013914 233 TNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 233 ~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~ 264 (434)
. +. + ...+|.|++|+|..+.
T Consensus 216 ~--~~------~----~~~~D~Vi~AtG~~~~ 235 (564)
T PRK12771 216 L--EQ------L----EGEFDAVFVAIGAQLG 235 (564)
T ss_pred H--HH------H----HhhCCEEEEeeCCCCC
Confidence 1 00 1 1248999999997643
No 408
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.00029 Score=66.19 Aligned_cols=35 Identities=23% Similarity=0.475 Sum_probs=30.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
..|||||||||.||..||...+|.|.+ .+++..+-
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~---TlLlT~~l 61 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGAR---TLLLTHNL 61 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCc---eEEeeccc
Confidence 468999999999999999999999987 57777764
No 409
>PRK13984 putative oxidoreductase; Provisional
Probab=97.44 E-value=0.0004 Score=70.88 Aligned_cols=90 Identities=20% Similarity=0.145 Sum_probs=67.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC-------c-cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------R-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~-------~-~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~ 233 (434)
++++++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . .++.++.....+.+++.|++++.++.+..-
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~-- 359 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGKD-- 359 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCCc--
Confidence 467899999999999999999999999999988765421 1 134555566667889999999999876321
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 234 NADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 234 ~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
+..++ ....+|.||+|+|..
T Consensus 360 --------~~~~~-~~~~yD~vilAtGa~ 379 (604)
T PRK13984 360 --------IPLEE-LREKHDAVFLSTGFT 379 (604)
T ss_pred --------CCHHH-HHhcCCEEEEEcCcC
Confidence 11111 134799999999975
No 410
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.43 E-value=0.00033 Score=72.04 Aligned_cols=90 Identities=17% Similarity=0.202 Sum_probs=71.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC-------c-cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------R-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~-------~-~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~ 233 (434)
.+++|.|||+|+.|+-+|..|.+.|+.|++.+|.+++.. . .+|+-+.+.-.++|.+.||+|..++.|-+-
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~-- 1861 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH-- 1861 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc--
Confidence 578999999999999999999999999999999988632 1 157778888889999999999998765321
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 234 NADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 234 ~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
+. -|+-.-+-|.||+|+|..
T Consensus 1862 --------vs-~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1862 --------VS-LDELKKENDAIVLATGST 1881 (2142)
T ss_pred --------cc-HHHHhhccCeEEEEeCCC
Confidence 11 122234578999999954
No 411
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.42 E-value=0.0022 Score=61.78 Aligned_cols=100 Identities=20% Similarity=0.245 Sum_probs=71.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC--Cc----c-----------------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--PR----L----------------------------------- 202 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~--~~----~----------------------------------- 202 (434)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+... .. .
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~ 82 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR 82 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence 479999999999999999999999999999875310 00 0
Q ss_pred -----C-------------CHHHHHHHHHHHHhcCcEEEcCCeEEEEEe-cCCCcEEEEEe-CCCc--EEECCEEEEccc
Q 013914 203 -----F-------------TADIAAFYEGYYANKGIKIIKGTVAVGFTT-NADGEVKEVKL-KDGR--TLEADIVVVGVG 260 (434)
Q Consensus 203 -----~-------------~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~-~~~g~v~~v~~-~~g~--~~~~D~vi~a~G 260 (434)
+ ...+.+.+.+...+.|+++++++++++++. ++++ ..|++ .+|+ ++.+|+||-|-|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~--~~V~~~~~G~~~~i~ad~vVgADG 160 (392)
T PRK08243 83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDR--PYVTYEKDGEEHRLDCDFIAGCDG 160 (392)
T ss_pred EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCc--eEEEEEcCCeEEEEEeCEEEECCC
Confidence 0 012233444445678999999999999875 2222 34555 4664 689999999999
Q ss_pred CccCh
Q 013914 261 GRPLI 265 (434)
Q Consensus 261 ~~p~~ 265 (434)
....+
T Consensus 161 ~~S~v 165 (392)
T PRK08243 161 FHGVS 165 (392)
T ss_pred CCCch
Confidence 76544
No 412
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.40 E-value=0.00013 Score=67.37 Aligned_cols=66 Identities=12% Similarity=0.244 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcCcEEEcCCeEEEEEec-CCCcEEEEEeCC--Cc----EEECCEEEEcccCccChhhh-hccc
Q 013914 207 IAAFYEGYYANKGIKIIKGTVAVGFTTN-ADGEVKEVKLKD--GR----TLEADIVVVGVGGRPLISLF-KGQV 272 (434)
Q Consensus 207 ~~~~~~~~l~~~GV~~~~~~~v~~i~~~-~~g~v~~v~~~~--g~----~~~~D~vi~a~G~~p~~~~~-~~~~ 272 (434)
...++...+++.++++++++.|++|..+ +++++.+|++.+ +. .+.++.||+|.|.--...+| .+++
T Consensus 195 ~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi 268 (296)
T PF00732_consen 195 ATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI 268 (296)
T ss_dssp HHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred hhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence 4456666666669999999999999552 466777776643 33 46689999999954444443 4443
No 413
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.39 E-value=0.00049 Score=65.81 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=31.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 198 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~ 198 (434)
+|+|||+|..|+++|..|++.|.+|++++..+..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 6899999999999999999999999999976654
No 414
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.39 E-value=0.0024 Score=61.51 Aligned_cols=97 Identities=20% Similarity=0.359 Sum_probs=67.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccC-CccC--------------------------------Cc----------
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPE-PWCM--------------------------------PR---------- 201 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~-~~~~--------------------------------~~---------- 201 (434)
.|+|||+|+.|+-+|..|++.|.+|.++++. +... +.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS 81 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence 5899999999999999999999999999876 2110 00
Q ss_pred ---c---CC-HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC------C--cEEECCEEEEcccCccC
Q 013914 202 ---L---FT-ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD------G--RTLEADIVVVGVGGRPL 264 (434)
Q Consensus 202 ---~---~~-~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~------g--~~~~~D~vi~a~G~~p~ 264 (434)
+ ++ ..+.+.+.+.+.+.|++++.+ .++++..++++ ..+++.+ | .++.+|.||.|.|....
T Consensus 82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~--~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~ 156 (388)
T TIGR02023 82 EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDG--VTLTYRTPKKGAGGEKGSVEADVVIGADGANSP 156 (388)
T ss_pred CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCe--EEEEEEeccccCCCcceEEEeCEEEECCCCCcH
Confidence 0 01 122345556667789999765 58888763333 3455442 2 37899999999996543
No 415
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.38 E-value=0.00041 Score=72.14 Aligned_cols=34 Identities=26% Similarity=0.213 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~ 195 (434)
.+++|+|||+|+.|+.+|..|.+.|++|+++++.
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 5789999999999999999999999999999975
No 416
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.38 E-value=0.00021 Score=71.19 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.+||||||+| ||++||.++++.|.+ |+||||.+.
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~---V~vlEk~~~ 40 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLS---VALVEATDK 40 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCc---EEEEecCCC
Confidence 6899999999 999999999999987 999999875
No 417
>PRK07538 hypothetical protein; Provisional
Probab=97.37 E-value=0.0027 Score=61.70 Aligned_cols=98 Identities=26% Similarity=0.353 Sum_probs=67.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc-----------------C------------------------
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-----------------F------------------------ 203 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~-----------------~------------------------ 203 (434)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.+.. +
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI 81 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence 68999999999999999999999999998875321100 0
Q ss_pred -------------------CHHHHHHHHHHHHh-cC-cEEEcCCeEEEEEecCCCcEEEEEeCCC-----cEEECCEEEE
Q 013914 204 -------------------TADIAAFYEGYYAN-KG-IKIIKGTVAVGFTTNADGEVKEVKLKDG-----RTLEADIVVV 257 (434)
Q Consensus 204 -------------------~~~~~~~~~~~l~~-~G-V~~~~~~~v~~i~~~~~g~v~~v~~~~g-----~~~~~D~vi~ 257 (434)
...+.+.+.+.+.+ .| +++++++++++++.++++.+ +.+.++ +++++|+||-
T Consensus 82 ~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~--~~~~~~~~g~~~~~~adlvIg 159 (413)
T PRK07538 82 WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV--VFLGDRAGGDLVSVRGDVLIG 159 (413)
T ss_pred eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE--EEEeccCCCccceEEeeEEEE
Confidence 00112233333333 35 57999999999987555533 333332 4899999999
Q ss_pred cccCccC
Q 013914 258 GVGGRPL 264 (434)
Q Consensus 258 a~G~~p~ 264 (434)
|-|....
T Consensus 160 ADG~~S~ 166 (413)
T PRK07538 160 ADGIHSA 166 (413)
T ss_pred CCCCCHH
Confidence 9996543
No 418
>PLN02676 polyamine oxidase
Probab=97.36 E-value=0.00028 Score=69.70 Aligned_cols=39 Identities=26% Similarity=0.363 Sum_probs=34.0
Q ss_pred cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEccc
Q 013914 220 IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 260 (434)
Q Consensus 220 V~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G 260 (434)
.+++++++|++|+.++++ ..|++.+|+++.+|.||++++
T Consensus 245 ~~I~l~~~V~~I~~~~~g--V~V~~~~G~~~~a~~VIvtvP 283 (487)
T PLN02676 245 PRLKLNKVVREISYSKNG--VTVKTEDGSVYRAKYVIVSVS 283 (487)
T ss_pred CceecCCEeeEEEEcCCc--EEEEECCCCEEEeCEEEEccC
Confidence 679999999999885554 578889999999999999988
No 419
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.31 E-value=0.0012 Score=61.49 Aligned_cols=102 Identities=21% Similarity=0.291 Sum_probs=72.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc-C---------CHHHHHHHHHHHHhc--CcEEEcCCeEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-F---------TADIAAFYEGYYANK--GIKIIKGTVAV 229 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~-~---------~~~~~~~~~~~l~~~--GV~~~~~~~v~ 229 (434)
+.++++|+|+|+.|+.+...|-..-.+|+++.+.+.++-.. + -..+.+.+....++. +++++. +.-.
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~e-Aec~ 132 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLE-AECT 132 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEe-cccE
Confidence 46899999999999999999999999999999998875321 1 245666777766665 455543 3445
Q ss_pred EEEecCCCcEEEE--EeCCC----cEEECCEEEEcccCccChh
Q 013914 230 GFTTNADGEVKEV--KLKDG----RTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 230 ~i~~~~~g~v~~v--~~~~g----~~~~~D~vi~a~G~~p~~~ 266 (434)
.++. +.+...+ .++++ -.+.+|.+|+|+|..|++.
T Consensus 133 ~iDp--~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TF 173 (491)
T KOG2495|consen 133 KIDP--DNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTF 173 (491)
T ss_pred eecc--cccEEEEeeeccCCCcceeeecccEEEEeccCCCCCC
Confidence 6665 3322233 23444 3688999999999988875
No 420
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.31 E-value=0.00029 Score=71.17 Aligned_cols=66 Identities=18% Similarity=0.221 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-CCc--EEECC-EEEEccc-CccChhhhh
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DGR--TLEAD-IVVVGVG-GRPLISLFK 269 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~-~g~--~~~~D-~vi~a~G-~~p~~~~~~ 269 (434)
...+...+.+.+++.|++++++++++++..+++|++.+|... +|+ ++.++ .||+|+| +.-|.++++
T Consensus 212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~ 282 (584)
T PRK12835 212 GQSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRK 282 (584)
T ss_pred cHHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHH
Confidence 445566667777788888888888888877556777776543 332 35676 4777777 555665553
No 421
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.31 E-value=0.0023 Score=61.31 Aligned_cols=59 Identities=20% Similarity=0.340 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCC---cEEEEEe-CCCc--EE---ECCEEEEcccCc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG---EVKEVKL-KDGR--TL---EADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g---~v~~v~~-~~g~--~~---~~D~vi~a~G~~ 262 (434)
-+.+...+.+.|+++||+|+++++|+.++.+.++ .+..+.+ .+|. .+ +-|+|++..|..
T Consensus 206 yeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~ 273 (500)
T PF06100_consen 206 YESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSM 273 (500)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCcc
Confidence 4677889999999999999999999999763322 2333333 4443 23 358899888853
No 422
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.28 E-value=0.0019 Score=56.57 Aligned_cols=96 Identities=19% Similarity=0.206 Sum_probs=65.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc-------------------CCHHHHHHHHHH-----------
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-------------------FTADIAAFYEGY----------- 214 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~-------------------~~~~~~~~~~~~----------- 214 (434)
+++|||+|..|+.+|..|+..|.+|++++++.-+..++ -++.+.+.++..
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~ 82 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP 82 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence 68999999999999999999999999999874322110 012222222211
Q ss_pred ------------------------------HHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-cEEECCEEEEcccCc
Q 013914 215 ------------------------------YANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-RTLEADIVVVGVGGR 262 (434)
Q Consensus 215 ------------------------------l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g-~~~~~D~vi~a~G~~ 262 (434)
.-.-..++.++++|+++... ++...+.+++| +...+|.|++++..-
T Consensus 83 ~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LAtdL~V~~~~rVt~v~~~--~~~W~l~~~~g~~~~~~d~vvla~PAP 159 (331)
T COG3380 83 AVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLATDLTVVLETRVTEVART--DNDWTLHTDDGTRHTQFDDVVLAIPAP 159 (331)
T ss_pred cccccccCCCCCCCCCCccccCcchHHHHHHHhccchhhhhhhhhhheec--CCeeEEEecCCCcccccceEEEecCCC
Confidence 11123567778888888763 34467888666 467899999998853
No 423
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0023 Score=57.94 Aligned_cols=101 Identities=23% Similarity=0.312 Sum_probs=78.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC--Ccc-----------CCccCCHHHHHHHHHHHHhcCcEEEcCCeE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE--PWC-----------MPRLFTADIAAFYEGYYANKGIKIIKGTVA 228 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~--~~~-----------~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v 228 (434)
.+-.|+|||+|+.|...|-..++.|.+.-++... ... .+....+.+...+++..++..|+++...+.
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra 289 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRA 289 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhh
Confidence 5668999999999999999999988765443210 000 122246789999999999999999988888
Q ss_pred EEEEec-CCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 229 VGFTTN-ADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 229 ~~i~~~-~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
+++++. ..+....+++++|-.+++..+|++||.+
T Consensus 290 ~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 290 SKLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred hcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 888762 2355678999999999999999999953
No 424
>PRK06126 hypothetical protein; Provisional
Probab=97.26 E-value=0.0041 Score=62.77 Aligned_cols=99 Identities=25% Similarity=0.354 Sum_probs=68.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc-----------------------------------------
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------------- 201 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~----------------------------------------- 201 (434)
...|+|||+|+.|+-+|..|.+.|.+|+++++.+.....
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~ 86 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR 86 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence 468999999999999999999999999999876321000
Q ss_pred -------------c----------------------CC-HHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEe
Q 013914 202 -------------L----------------------FT-ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKL 244 (434)
Q Consensus 202 -------------~----------------------~~-~~~~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~g~v~~v~~ 244 (434)
. .+ ..+.+.+.+.+++ .++++++++++++++.++++ + .+++
T Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~-v-~v~~ 164 (545)
T PRK06126 87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADG-V-TATV 164 (545)
T ss_pred CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCe-E-EEEE
Confidence 0 00 0122333444444 48999999999999874444 2 2333
Q ss_pred ---CCCc--EEECCEEEEcccCcc
Q 013914 245 ---KDGR--TLEADIVVVGVGGRP 263 (434)
Q Consensus 245 ---~~g~--~~~~D~vi~a~G~~p 263 (434)
.+|+ ++.+|.||.|.|...
T Consensus 165 ~~~~~g~~~~i~ad~vVgADG~~S 188 (545)
T PRK06126 165 EDLDGGESLTIRADYLVGCDGARS 188 (545)
T ss_pred EECCCCcEEEEEEEEEEecCCcch
Confidence 3454 689999999999643
No 425
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.24 E-value=0.00039 Score=66.51 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.+|+|||||++|+.+|..|+++|.+ |+|+|+.+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~---V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVP---VILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCc---EEEEecccc
Confidence 3799999999999999999999987 999998754
No 426
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.22 E-value=0.00041 Score=64.36 Aligned_cols=35 Identities=23% Similarity=0.434 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
+.+|||||||.+|+++|..|.++|.+ |+|+|+...
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~---v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGID---VVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCe---EEEEeeccc
Confidence 46899999999999999999999998 999999654
No 427
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.22 E-value=0.0065 Score=58.62 Aligned_cols=100 Identities=22% Similarity=0.324 Sum_probs=66.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc---c---------------------------------------
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR---L--------------------------------------- 202 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~---~--------------------------------------- 202 (434)
+|+|||+|+.|+-+|..|++.|.+|.++++.+.+... .
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~~ 81 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRTL 81 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccCC
Confidence 6899999999999999999999999999876331100 0
Q ss_pred --------CC-HHHHHHHHHHHHhcCcEEEcCCeEEEEEec-CCCcEEEEEe--CC-----C--cEEECCEEEEcccCcc
Q 013914 203 --------FT-ADIAAFYEGYYANKGIKIIKGTVAVGFTTN-ADGEVKEVKL--KD-----G--RTLEADIVVVGVGGRP 263 (434)
Q Consensus 203 --------~~-~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~-~~g~v~~v~~--~~-----g--~~~~~D~vi~a~G~~p 263 (434)
++ ..+.+.+.+.+.+.|++++.++ +..+... ..+....+++ .+ | .++.++.||.|.|..+
T Consensus 82 ~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S 160 (398)
T TIGR02028 82 KEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS 160 (398)
T ss_pred CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence 00 1122345556677899998775 6666431 1222234443 22 3 3789999999999765
Q ss_pred Ch
Q 013914 264 LI 265 (434)
Q Consensus 264 ~~ 265 (434)
..
T Consensus 161 ~v 162 (398)
T TIGR02028 161 RV 162 (398)
T ss_pred HH
Confidence 43
No 428
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.22 E-value=0.0042 Score=59.80 Aligned_cols=101 Identities=18% Similarity=0.227 Sum_probs=69.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC--Cc----cCC---------------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--PR----LFT--------------------------------- 204 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~--~~----~~~--------------------------------- 204 (434)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+... .. .+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDGQ 82 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCCE
Confidence 579999999999999999999999999999876310 00 000
Q ss_pred --------------------HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-CCc--EEECCEEEEcccC
Q 013914 205 --------------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DGR--TLEADIVVVGVGG 261 (434)
Q Consensus 205 --------------------~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~-~g~--~~~~D~vi~a~G~ 261 (434)
..+.+.+.+.+.+.|+.++++.+++.+...++.. ..|++. +|+ ++++|+||-|-|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~-~~V~~~~~g~~~~i~adlvIGADG~ 161 (390)
T TIGR02360 83 RFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDR-PYVTFERDGERHRLDCDFIAGCDGF 161 (390)
T ss_pred EEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCc-cEEEEEECCeEEEEEeCEEEECCCC
Confidence 1122334445556788888888777775412222 356664 775 6899999999996
Q ss_pred ccCh
Q 013914 262 RPLI 265 (434)
Q Consensus 262 ~p~~ 265 (434)
....
T Consensus 162 ~S~V 165 (390)
T TIGR02360 162 HGVS 165 (390)
T ss_pred chhh
Confidence 5543
No 429
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.21 E-value=0.00051 Score=62.83 Aligned_cols=99 Identities=13% Similarity=0.223 Sum_probs=74.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+.+|||+|..||..+.-..+.|.+ |+++|-.+...-. + ..+ ....+...+.+
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGse---VT~VEf~~~i~~~--------m----D~E-----------isk~~qr~L~k 264 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSE---VTVVEFLDQIGGV--------M----DGE-----------ISKAFQRVLQK 264 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCe---EEEEEehhhhccc--------c----CHH-----------HHHHHHHHHHh
Confidence 46899999999999999999999876 9999987653210 0 000 01345677888
Q ss_pred cCcEEEcCCeeEEEECCCC-E--EEcc---CC--cEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASK-T--LLSA---TG--LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~-~--v~~~---~~--~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++|.+++.|....++.. . +.+. ++ +++++|.|++++|-+|+..
T Consensus 265 QgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~ 317 (506)
T KOG1335|consen 265 QGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTE 317 (506)
T ss_pred cCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCccccc
Confidence 9999999999999988765 3 3332 22 4789999999999998743
No 430
>PLN02529 lysine-specific histone demethylase 1
Probab=97.20 E-value=0.00049 Score=70.49 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=34.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~ 44 (434)
+.++|+|||||++|++||..|+++|++ |+|+|+++..+
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~---v~v~E~~~~~G 196 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFK---VVVLEGRNRPG 196 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCc---EEEEecCccCc
Confidence 357999999999999999999999987 99999987643
No 431
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.20 E-value=0.0056 Score=56.95 Aligned_cols=119 Identities=22% Similarity=0.248 Sum_probs=78.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-------CCCCccCccccCCCCCCCCCC-----------
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-------YERPALSKAYLFPEGTARLPG----------- 65 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~-------~~~~~~~~~~~~~~~~~~~~~----------- 65 (434)
+.+||+||||||||+.||..++++|.+ |+|||+.+... -.||.++..........+.|+
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~---V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ 78 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRR---VLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALAR 78 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCE---EEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHh
Confidence 478999999999999999999999987 99999998632 122332221111111111110
Q ss_pred --------c------ccccC--CC----------CCCCChhhHhhcCcEEEcCCeeEEEECCC--CEEEccCCcEEEcce
Q 013914 66 --------F------HVCVG--SG----------GERLLPEWYKEKGIELILSTEIVRADIAS--KTLLSATGLIFKYQI 117 (434)
Q Consensus 66 --------~------~~~~~--~~----------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~~~~~~~~~~d~ 117 (434)
| .+..+ .. ..+.+...+++.||+++.+++|.+++.+. ..+.+.+++++.+|.
T Consensus 79 ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~ 158 (408)
T COG2081 79 FTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDS 158 (408)
T ss_pred CCHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccE
Confidence 0 00000 00 01123334566899999999999999885 457778888899999
Q ss_pred EEEecCCC
Q 013914 118 LVIATGST 125 (434)
Q Consensus 118 lvlAtG~~ 125 (434)
+|+|||..
T Consensus 159 lilAtGG~ 166 (408)
T COG2081 159 LILATGGK 166 (408)
T ss_pred EEEecCCc
Confidence 99999943
No 432
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.18 E-value=0.0005 Score=69.17 Aligned_cols=65 Identities=22% Similarity=0.186 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-CCc--EEECC-EEEEccc-CccChhhhh
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DGR--TLEAD-IVVVGVG-GRPLISLFK 269 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~-~g~--~~~~D-~vi~a~G-~~p~~~~~~ 269 (434)
...+...+.+.+++.|++++.+++++++.. +++++.+|... +|+ ++.++ .||+|+| +.-|.+++.
T Consensus 207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~-~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~N~em~~ 276 (557)
T PRK12844 207 GAALIGRMLEAALAAGVPLWTNTPLTELIV-EDGRVVGVVVVRDGREVLIRARRGVLLASGGFGHNAEMRK 276 (557)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEE-eCCEEEEEEEEECCeEEEEEecceEEEecCCccCCHHHHH
Confidence 566777777888888999999999988876 36777776553 343 46674 6888887 555555543
No 433
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.18 E-value=0.0074 Score=61.29 Aligned_cols=35 Identities=31% Similarity=0.449 Sum_probs=32.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 196 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~ 196 (434)
+..+|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 56899999999999999999999999999999865
No 434
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.18 E-value=0.00071 Score=62.90 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=33.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~ 44 (434)
.++|+|+|||.+||++|++|++++. +..|+|+|+.+..+
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p-~~~i~l~Ea~~RvG 49 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGP-DVTITLFEASPRVG 49 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCC-CceEEEEecCCccc
Confidence 4789999999999999999999875 56688899998753
No 435
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.17 E-value=0.0012 Score=63.48 Aligned_cols=97 Identities=16% Similarity=0.185 Sum_probs=65.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC------------------------------------------Cc
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM------------------------------------------PR 201 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~------------------------------------------~~ 201 (434)
-.|+|||+|..|+|+|.+.++.|.++.++.....-. ..
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~ 84 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNS 84 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccC
Confidence 478999999999999999999999988876541110 00
Q ss_pred c-----------CCHH-HHHHHHHHHH-hcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 202 L-----------FTAD-IAAFYEGYYA-NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 202 ~-----------~~~~-~~~~~~~~l~-~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
. .|.. ....+++.++ ..++.++.+. |.++...++.++.+|.+.+|..+.|+.||++||.
T Consensus 85 sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~-v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGT 156 (621)
T COG0445 85 SKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGE-VEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT 156 (621)
T ss_pred CCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhh-hHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence 0 0001 1233333343 2466666554 5565543333689999999999999999999994
No 436
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.16 E-value=0.0027 Score=63.26 Aligned_cols=102 Identities=24% Similarity=0.396 Sum_probs=77.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhC---CCeEEEEccCCccC------CccC-----CHHHHHHHHHHHHhcCcEEEcCCeE
Q 013914 163 NGKAVVVGGGYIGLELSAALKIN---NIDVSMVYPEPWCM------PRLF-----TADIAAFYEGYYANKGIKIIKGTVA 228 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~---g~~v~lv~~~~~~~------~~~~-----~~~~~~~~~~~l~~~GV~~~~~~~v 228 (434)
..+++|||.|..|..+...+.+. -..+|++...++.. .+.+ -.++.-.-.++.+++||+++.+.++
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v 82 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV 82 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence 46899999999999888888773 36788876554431 1111 1233344467889999999999999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh
Q 013914 229 VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF 268 (434)
Q Consensus 229 ~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~ 268 (434)
..|.. +. ..|.++.|.++.+|.+|+|||+.|.....
T Consensus 83 ~~idr--~~--k~V~t~~g~~~~YDkLilATGS~pfi~Pi 118 (793)
T COG1251 83 IQIDR--AN--KVVTTDAGRTVSYDKLIIATGSYPFILPI 118 (793)
T ss_pred EEecc--Cc--ceEEccCCcEeecceeEEecCccccccCC
Confidence 99986 33 46888999999999999999999876654
No 437
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.14 E-value=0.00053 Score=62.76 Aligned_cols=35 Identities=26% Similarity=0.483 Sum_probs=32.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
...||+|||||.+|-+.|..|+|.|.+ |.||||+-
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRr---VhVIERDl 78 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRR---VHVIERDL 78 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcE---EEEEeccc
Confidence 458999999999999999999999987 99999984
No 438
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.12 E-value=0.00081 Score=67.63 Aligned_cols=65 Identities=26% Similarity=0.190 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-CCc--EEEC-CEEEEccc-CccChhhhh
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DGR--TLEA-DIVVVGVG-GRPLISLFK 269 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~-~g~--~~~~-D~vi~a~G-~~p~~~~~~ 269 (434)
...+...+.+.+++.||+++++++++++.. ++|++.+|... +|+ .+.+ ..||+|+| +.-|.++..
T Consensus 216 G~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~em~~ 285 (564)
T PRK12845 216 GQALAAGLFAGVLRAGIPIWTETSLVRLTD-DGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDMEMRW 285 (564)
T ss_pred hHHHHHHHHHHHHHCCCEEEecCEeeEEEe-cCCEEEEEEEEECCcEEEEEcCCEEEEecCCccccHHHHH
Confidence 577888888889999999999999999876 46888887543 443 3455 57999998 655655543
No 439
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.12 E-value=0.00065 Score=70.04 Aligned_cols=37 Identities=24% Similarity=0.407 Sum_probs=33.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~ 44 (434)
..+|+|||||++|++||+.|.+.|++ |+|+|+++..+
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~---v~v~E~~~r~G 274 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFK---VVVLEGRARPG 274 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCc---EEEEeccccCC
Confidence 57899999999999999999999987 99999997643
No 440
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.11 E-value=0.00079 Score=60.29 Aligned_cols=37 Identities=30% Similarity=0.484 Sum_probs=33.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~ 44 (434)
++|++|||+|.+|+..|..|+++|.+ |.||||.+..+
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~---VLIvekR~HIG 37 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKR---VLIVEKRNHIG 37 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCE---EEEEeccccCC
Confidence 47999999999999999999999987 99999998754
No 441
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.09 E-value=0.00057 Score=71.49 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEeCCCC
Q 013914 7 KYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAV 42 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~--g~~~~~V~vie~~~~ 42 (434)
+|+|||||+||+++|..|++. |++ |+|+|+++.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~---V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHE---VTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCe---EEEEecCCC
Confidence 799999999999999999998 666 999999875
No 442
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.06 E-value=0.0018 Score=62.88 Aligned_cols=89 Identities=19% Similarity=0.182 Sum_probs=69.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc--------cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~ 233 (434)
.+++|+|||+|+.|+.+|..|++.|+.|+++++.+..... .++.++.+...+.|++.|++|+.++.+-.
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~--- 198 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR--- 198 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC---
Confidence 3689999999999999999999999999999988765321 25678899999999999999999987531
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 234 NADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 234 ~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
.+++++- .-+.|.|++++|.
T Consensus 199 -------~it~~~L-~~e~Dav~l~~G~ 218 (457)
T COG0493 199 -------DITLEEL-LKEYDAVFLATGA 218 (457)
T ss_pred -------cCCHHHH-HHhhCEEEEeccc
Confidence 0111111 2235999999994
No 443
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.01 E-value=0.011 Score=58.30 Aligned_cols=95 Identities=27% Similarity=0.389 Sum_probs=65.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC--------------c----------------cCC---------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--------------R----------------LFT--------- 204 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~--------------~----------------~~~--------- 204 (434)
..|+|||+|..|+-+|..+++.|.+|.++++.+.... . ..+
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~ 81 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS 81 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3689999999999999999999999999877421100 0 001
Q ss_pred --------------------------------------HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC
Q 013914 205 --------------------------------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD 246 (434)
Q Consensus 205 --------------------------------------~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~ 246 (434)
..+.+.+.+.+++.||+++.+ .+..+.. +++++.++.. +
T Consensus 82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~-~~g~v~Gv~~-~ 158 (466)
T PRK08401 82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAI-KNGKAYGVFL-D 158 (466)
T ss_pred HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEe-eCCEEEEEEE-C
Confidence 123344445566677887765 5666654 3566666665 4
Q ss_pred CcEEECCEEEEcccC
Q 013914 247 GRTLEADIVVVGVGG 261 (434)
Q Consensus 247 g~~~~~D~vi~a~G~ 261 (434)
++.+.++.||+|||-
T Consensus 159 g~~i~a~~VVLATGG 173 (466)
T PRK08401 159 GELLKFDATVIATGG 173 (466)
T ss_pred CEEEEeCeEEECCCc
Confidence 567899999999994
No 444
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=96.96 E-value=0.00091 Score=66.26 Aligned_cols=56 Identities=13% Similarity=0.277 Sum_probs=40.9
Q ss_pred HHHHhcCcEEEcCCeEEEEEecCC--CcEEEEEeC---CCc--EEECCEEEEcccCccChhhh
Q 013914 213 GYYANKGIKIIKGTVAVGFTTNAD--GEVKEVKLK---DGR--TLEADIVVVGVGGRPLISLF 268 (434)
Q Consensus 213 ~~l~~~GV~~~~~~~v~~i~~~~~--g~v~~v~~~---~g~--~~~~D~vi~a~G~~p~~~~~ 268 (434)
+.++..+++++.++.|.+|..+++ +++..+... +|+ ++.|+.||+|.|..-+..++
T Consensus 222 ~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLL 284 (544)
T TIGR02462 222 DDAPSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQIL 284 (544)
T ss_pred hhccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHH
Confidence 344456699999999999987544 356666443 353 57899999999976666655
No 445
>PRK07804 L-aspartate oxidase; Provisional
Probab=96.96 E-value=0.012 Score=59.10 Aligned_cols=98 Identities=27% Similarity=0.341 Sum_probs=69.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC---------------c----------------c----------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP---------------R----------------L---------- 202 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~---------------~----------------~---------- 202 (434)
-.|+|||+|..|+-+|..+++.|.+|.++++.+.... . .
T Consensus 17 ~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~~~ 96 (541)
T PRK07804 17 ADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRSLV 96 (541)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 4799999999999999999999999999876532100 0 0
Q ss_pred ---------------------------------------------CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCC
Q 013914 203 ---------------------------------------------FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 237 (434)
Q Consensus 203 ---------------------------------------------~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g 237 (434)
....+.+.+.+.+++.||+++.++.+.++..++++
T Consensus 97 ~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g 176 (541)
T PRK07804 97 AEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDLLTDGTG 176 (541)
T ss_pred HHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCC
Confidence 01123344555566778888888889888764456
Q ss_pred cEEEEEeC-------CC-cEEECCEEEEcccC
Q 013914 238 EVKEVKLK-------DG-RTLEADIVVVGVGG 261 (434)
Q Consensus 238 ~v~~v~~~-------~g-~~~~~D~vi~a~G~ 261 (434)
++.++... ++ ..+.++.||+|+|-
T Consensus 177 ~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG 208 (541)
T PRK07804 177 AVAGVTLHVLGEGSPDGVGAVHAPAVVLATGG 208 (541)
T ss_pred eEEEEEEEeccCCCCCcEEEEEcCeEEECCCC
Confidence 77776553 22 36889999999994
No 446
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=96.94 E-value=0.016 Score=56.69 Aligned_cols=101 Identities=19% Similarity=0.262 Sum_probs=66.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC---cc----------C--------------------------
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP---RL----------F-------------------------- 203 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~---~~----------~-------------------------- 203 (434)
.-.|+|||+|+.|+-+|..|++.|.+|.++++.+.... .. +
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~~ 118 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGK 118 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEecc
Confidence 34799999999999999999999999999987632100 00 0
Q ss_pred -----------C-HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCC-CcEEEEEeCC-------C--cEEECCEEEEcccC
Q 013914 204 -----------T-ADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD-GEVKEVKLKD-------G--RTLEADIVVVGVGG 261 (434)
Q Consensus 204 -----------~-~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~-g~v~~v~~~~-------g--~~~~~D~vi~a~G~ 261 (434)
+ ..+.+.+.+.+.+.|++++.+ .+.++....+ +....+++.+ | .++++|.||-|.|.
T Consensus 119 ~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~ 197 (450)
T PLN00093 119 TLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGA 197 (450)
T ss_pred cCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCc
Confidence 0 012334555667789999766 4767753211 1222344322 3 47999999999996
Q ss_pred ccC
Q 013914 262 RPL 264 (434)
Q Consensus 262 ~p~ 264 (434)
...
T Consensus 198 ~S~ 200 (450)
T PLN00093 198 NSR 200 (450)
T ss_pred chH
Confidence 543
No 447
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.94 E-value=0.0023 Score=60.48 Aligned_cols=72 Identities=21% Similarity=0.266 Sum_probs=56.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc------CCHH------HHHHHHHHHHhcCcEEEcCCeEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------FTAD------IAAFYEGYYANKGIKIIKGTVAV 229 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~------~~~~------~~~~~~~~l~~~GV~~~~~~~v~ 229 (434)
-.++++|||||..|++.|..|++.|.+|+++++.+.+..++ |+.. +.-.+.+....-.|++++.++|+
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~ 202 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVE 202 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeee
Confidence 36799999999999999999999999999999988775432 2221 22334444555679999999999
Q ss_pred EEEe
Q 013914 230 GFTT 233 (434)
Q Consensus 230 ~i~~ 233 (434)
++..
T Consensus 203 ev~G 206 (622)
T COG1148 203 EVSG 206 (622)
T ss_pred eecc
Confidence 9876
No 448
>PLN02985 squalene monooxygenase
Probab=96.92 E-value=0.014 Score=58.08 Aligned_cols=101 Identities=20% Similarity=0.253 Sum_probs=66.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc----------------------------------------
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL---------------------------------------- 202 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~---------------------------------------- 202 (434)
...|+|||+|+.|+-+|..|++.|.+|+++++.+....+.
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~g~ 122 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDGK 122 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEECCE
Confidence 4579999999999999999999999999998763210000
Q ss_pred -----C-----------------CHHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEe--CCCcE--EECCEE
Q 013914 203 -----F-----------------TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKL--KDGRT--LEADIV 255 (434)
Q Consensus 203 -----~-----------------~~~~~~~~~~~l~~~-GV~~~~~~~v~~i~~~~~g~v~~v~~--~~g~~--~~~D~v 255 (434)
+ ..++.+.+.+.+++. +|+++.++ +.++.. +++.+.++++ .+|++ +.+|+|
T Consensus 123 ~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~gt-vv~li~-~~~~v~gV~~~~~dG~~~~~~AdLV 200 (514)
T PLN02985 123 EAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEGT-VKSLIE-EKGVIKGVTYKNSAGEETTALAPLT 200 (514)
T ss_pred EEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEeee-EEEEEE-cCCEEEEEEEEcCCCCEEEEECCEE
Confidence 0 012334444445444 68888664 555554 3454445554 46654 569999
Q ss_pred EEcccCccCh
Q 013914 256 VVGVGGRPLI 265 (434)
Q Consensus 256 i~a~G~~p~~ 265 (434)
|.|.|.....
T Consensus 201 VgADG~~S~v 210 (514)
T PLN02985 201 VVCDGCYSNL 210 (514)
T ss_pred EECCCCchHH
Confidence 9999975544
No 449
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=96.87 E-value=0.017 Score=58.64 Aligned_cols=50 Identities=26% Similarity=0.396 Sum_probs=37.4
Q ss_pred HHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccC
Q 013914 211 YEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGG 261 (434)
Q Consensus 211 ~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~---~~g~--~~~~D~vi~a~G~ 261 (434)
+.+.+++.||+++.++.++++.. ++|++.++.. .+|+ .+.++.||+|+|-
T Consensus 135 L~~~~~~~gv~i~~~~~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG 189 (566)
T TIGR01812 135 LYEQCLKLGVSFFNEYFALDLIH-DDGRVRGVVAYDLKTGEIVFFRAKAVVLATGG 189 (566)
T ss_pred HHHHHHHcCCEEEeccEEEEEEE-eCCEEEEEEEEECCCCcEEEEECCeEEECCCc
Confidence 34445567899999999999876 3677776654 4564 5789999999994
No 450
>PRK08275 putative oxidoreductase; Provisional
Probab=96.87 E-value=0.019 Score=57.93 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccCc
Q 013914 208 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGR 262 (434)
Q Consensus 208 ~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~---~~g~--~~~~D~vi~a~G~~ 262 (434)
.+.+.+.+++.||+++.++.+.++..++++++.++.. .+|+ .+.++.||+|+|-.
T Consensus 140 ~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (554)
T PRK08275 140 KKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAA 199 (554)
T ss_pred HHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCc
Confidence 3455555677899999999999998744677777653 3564 47899999999954
No 451
>PF14721 AIF_C: Apoptosis-inducing factor, mitochondrion-associated, C-term; PDB: 3GD4_A 1GV4_A 3GD3_A 1M6I_A.
Probab=96.73 E-value=0.013 Score=44.66 Aligned_cols=34 Identities=18% Similarity=0.171 Sum_probs=21.7
Q ss_pred HHHHHhccCCCCcccCCCCCCeeEEec-cCceeEEeecCC
Q 013914 325 AVKTIMATEGGKTVTGYDYLPYFYSRA-FDLSWQFYGDNV 363 (434)
Q Consensus 325 aa~~i~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~g~~~ 363 (434)
|++||.+.. .+|.++|+||+.+ +++.+..+|...
T Consensus 1 AG~NM~ga~-----~py~hq~~fwSdlgp~vgyeAvG~~D 35 (133)
T PF14721_consen 1 AGENMTGAN-----KPYWHQSMFWSDLGPDVGYEAVGIVD 35 (133)
T ss_dssp HHHHHTTT--------S-S--EEEEESSTTEEEEEEES--
T ss_pred CCccccCCC-----CcccccchhHhhcCCCcCeEEeeecc
Confidence 578888764 7999999999998 578888888643
No 452
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.73 E-value=0.0015 Score=65.37 Aligned_cols=59 Identities=17% Similarity=0.271 Sum_probs=42.0
Q ss_pred HHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC--CC---c-EEECCEEEEcccCccChhhh
Q 013914 209 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DG---R-TLEADIVVVGVGGRPLISLF 268 (434)
Q Consensus 209 ~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~--~g---~-~~~~D~vi~a~G~~p~~~~~ 268 (434)
..+...++..++.+.+++.+.++.. +.++...+++. ++ + ...++.||+|.|...+..++
T Consensus 207 a~l~~a~~~~nl~v~t~a~v~ri~~-~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL 271 (542)
T COG2303 207 AYLKPALKRPNLTLLTGARVRRILL-EGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLL 271 (542)
T ss_pred hcchhHhcCCceEEecCCEEEEEEE-ECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHH
Confidence 3444567778899999999999988 45555555553 33 1 24678999999977766665
No 453
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=96.69 E-value=0.028 Score=56.07 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 196 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~ 196 (434)
-.|+|||||.+|+-+|..+++.|.+|.++++.+
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d 39 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGRGLSVLLCEQDD 39 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 479999999999999999999999999999864
No 454
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=96.67 E-value=0.032 Score=56.92 Aligned_cols=96 Identities=13% Similarity=0.193 Sum_probs=66.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCccCCcc-----------C---------------------CH----
Q 013914 164 GKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPRL-----------F---------------------TA---- 205 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~--g~~v~lv~~~~~~~~~~-----------~---------------------~~---- 205 (434)
-.|+|||+|..|+-+|..+++. |.+|.++++.+...... + ++
T Consensus 12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv~ 91 (608)
T PRK06854 12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLVY 91 (608)
T ss_pred eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHHHH
Confidence 3699999999999999999998 99999988753210000 0 00
Q ss_pred -----------------------------------------HHHHHHHHHHHhcC-cEEEcCCeEEEEEecCCCcEEEEE
Q 013914 206 -----------------------------------------DIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVK 243 (434)
Q Consensus 206 -----------------------------------------~~~~~~~~~l~~~G-V~~~~~~~v~~i~~~~~g~v~~v~ 243 (434)
.+.+.+.+.+++.+ |+++.++.+.++.. +++++.++.
T Consensus 92 ~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~-~~g~v~Gv~ 170 (608)
T PRK06854 92 DIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLV-DDNRIAGAV 170 (608)
T ss_pred HHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEE-eCCEEEEEE
Confidence 11222333445555 99999999999875 356666653
Q ss_pred ---eCCCc--EEECCEEEEccc
Q 013914 244 ---LKDGR--TLEADIVVVGVG 260 (434)
Q Consensus 244 ---~~~g~--~~~~D~vi~a~G 260 (434)
..+++ .+.++.||+|+|
T Consensus 171 ~~~~~~g~~~~i~AkaVILATG 192 (608)
T PRK06854 171 GFSVRENKFYVFKAKAVIVATG 192 (608)
T ss_pred EEEccCCcEEEEECCEEEECCC
Confidence 24554 688999999999
No 455
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=96.65 E-value=0.027 Score=57.35 Aligned_cols=43 Identities=19% Similarity=0.312 Sum_probs=33.7
Q ss_pred CcEEEcCCeEEEEEecCCCcEEEEEeC---CCc--EEECCEEEEcccC
Q 013914 219 GIKIIKGTVAVGFTTNADGEVKEVKLK---DGR--TLEADIVVVGVGG 261 (434)
Q Consensus 219 GV~~~~~~~v~~i~~~~~g~v~~v~~~---~g~--~~~~D~vi~a~G~ 261 (434)
||+++.++.+.++..+++|++.++... +|+ .+.++.||+|||-
T Consensus 147 gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG 194 (603)
T TIGR01811 147 LVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGG 194 (603)
T ss_pred CcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 788999999998876455688887753 453 5789999999994
No 456
>PLN03000 amine oxidase
Probab=96.64 E-value=0.0028 Score=65.63 Aligned_cols=37 Identities=27% Similarity=0.395 Sum_probs=33.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~ 44 (434)
..+|+|||||++|+++|..|.+.|++ |+|+|+.+..+
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~---V~VlE~~~riG 220 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFK---VTVLEGRKRPG 220 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCc---EEEEEccCcCC
Confidence 58999999999999999999999987 99999987643
No 457
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.61 E-value=0.0086 Score=58.92 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=33.2
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
|.++.++++|+|+|..|+.+|..|++.|++ |+++|++.
T Consensus 1 ~~~~~k~v~iiG~g~~G~~~A~~l~~~G~~---V~~~d~~~ 38 (450)
T PRK14106 1 MELKGKKVLVVGAGVSGLALAKFLKKLGAK---VILTDEKE 38 (450)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCc
Confidence 434568999999999999999999999987 99998874
No 458
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.57 E-value=0.03 Score=56.68 Aligned_cols=50 Identities=10% Similarity=0.078 Sum_probs=37.4
Q ss_pred HHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC---CCc--EEECCEEEEccc
Q 013914 210 FYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DGR--TLEADIVVVGVG 260 (434)
Q Consensus 210 ~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~---~g~--~~~~D~vi~a~G 260 (434)
.+.+.+++.||+++.++.++++.. ++|++.++... +|+ .+.++.||+|||
T Consensus 141 ~L~~~~~~~gv~i~~~~~~~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 195 (566)
T PRK06452 141 TLFERTSGLNVDFYNEWFSLDLVT-DNKKVVGIVAMQMKTLTPFFFKTKAVVLATG 195 (566)
T ss_pred HHHHHHHhCCCEEEeCcEEEEEEE-ECCEEEEEEEEECCCCeEEEEEeCeEEECCC
Confidence 344445567899999999999886 46888887653 332 578999999999
No 459
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.55 E-value=0.032 Score=55.62 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 196 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~ 196 (434)
-.|+|||||.+|+-+|..|++.|.+|.++++.+
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d 39 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGRGLKVLLCEKDD 39 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence 479999999999999999999999999999874
No 460
>PRK06175 L-aspartate oxidase; Provisional
Probab=96.55 E-value=0.035 Score=54.18 Aligned_cols=53 Identities=21% Similarity=0.322 Sum_probs=37.9
Q ss_pred HHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEE-eCCCc--EEECCEEEEcccC
Q 013914 208 AAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVK-LKDGR--TLEADIVVVGVGG 261 (434)
Q Consensus 208 ~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~g~v~~v~-~~~g~--~~~~D~vi~a~G~ 261 (434)
.+.+.+.+++ .||+++.++.+.++.. +++++.++. ..+++ .+.++.||+|+|-
T Consensus 131 ~~~L~~~~~~~~gV~i~~~t~v~~Li~-~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG 187 (433)
T PRK06175 131 EKILLKKVKKRKNITIIENCYLVDIIE-NDNTCIGAICLKDNKQINIYSKVTILATGG 187 (433)
T ss_pred HHHHHHHHHhcCCCEEEECcEeeeeEe-cCCEEEEEEEEECCcEEEEEcCeEEEccCc
Confidence 3444445544 5899999999999876 356666654 33454 5889999999994
No 461
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.52 E-value=0.005 Score=42.67 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=29.4
Q ss_pred EECCCHHHHHHHHHHHhCCCeEEEEccCCccCC
Q 013914 168 VVGGGYIGLELSAALKINNIDVSMVYPEPWCMP 200 (434)
Q Consensus 168 ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~ 200 (434)
|||+|.+|+.+|..|.+.|.+|+++++.+++..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG 33 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGG 33 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSG
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCc
Confidence 799999999999999999999999999887643
No 462
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.52 E-value=0.038 Score=56.63 Aligned_cols=47 Identities=26% Similarity=0.417 Sum_probs=36.5
Q ss_pred HHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC---CCc--EEECCEEEEcccC
Q 013914 214 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DGR--TLEADIVVVGVGG 261 (434)
Q Consensus 214 ~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~---~g~--~~~~D~vi~a~G~ 261 (434)
.+++.||+++.++.+.++.. +++++.++... +|+ .+.++.||+|||-
T Consensus 179 ~~~~~gV~i~~~t~v~~Li~-d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG 230 (640)
T PRK07573 179 QIAAGTVKMYTRTEMLDLVV-VDGRARGIVARNLVTGEIERHTADAVVLATGG 230 (640)
T ss_pred HHHhcCCEEEeceEEEEEEE-eCCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence 45567899999999999876 35778777653 453 5889999999994
No 463
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=96.51 E-value=0.037 Score=56.73 Aligned_cols=100 Identities=25% Similarity=0.347 Sum_probs=68.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCccCCc----------------------------------------
Q 013914 163 NGKAVVVGGGYIGLELSAALKIN-NIDVSMVYPEPWCMPR---------------------------------------- 201 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~-g~~v~lv~~~~~~~~~---------------------------------------- 201 (434)
.-.|+|||+|+.|+-+|..|++. |.+|+++++.+.....
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~ 111 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDP 111 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCC
Confidence 35899999999999999999995 9999999876321100
Q ss_pred -------------------------cCC-HHHHHHHHHHHHhcC--cEEEcCCeEEEEEecCCC-cEEEEEeC------C
Q 013914 202 -------------------------LFT-ADIAAFYEGYYANKG--IKIIKGTVAVGFTTNADG-EVKEVKLK------D 246 (434)
Q Consensus 202 -------------------------~~~-~~~~~~~~~~l~~~G--V~~~~~~~v~~i~~~~~g-~v~~v~~~------~ 246 (434)
.+. ..+.+.+.+.+++.| ++++.++++++++.++++ ....+++. +
T Consensus 112 ~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~ 191 (634)
T PRK08294 112 ADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHE 191 (634)
T ss_pred ccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCC
Confidence 000 023344555566665 578889999999764322 22345553 3
Q ss_pred C--cEEECCEEEEcccCc
Q 013914 247 G--RTLEADIVVVGVGGR 262 (434)
Q Consensus 247 g--~~~~~D~vi~a~G~~ 262 (434)
| +++.||+||-|=|.+
T Consensus 192 g~~~tv~A~~lVGaDGa~ 209 (634)
T PRK08294 192 GEEETVRAKYVVGCDGAR 209 (634)
T ss_pred CceEEEEeCEEEECCCCc
Confidence 5 578999999998854
No 464
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.51 E-value=0.013 Score=57.66 Aligned_cols=82 Identities=24% Similarity=0.211 Sum_probs=58.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 241 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~ 241 (434)
..++++|+|+|.+|+.+|..|.+.|.+|+++++.+ ...+ +...+.+.+.|++++.+.....
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~-------~~~~-~~~~~~l~~~~~~~~~~~~~~~----------- 64 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE-------EDQL-KEALEELGELGIELVLGEYPEE----------- 64 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc-------hHHH-HHHHHHHHhcCCEEEeCCcchh-----------
Confidence 46899999999999999999999999999997653 1222 2223446677887665543210
Q ss_pred EEeCCCcEEECCEEEEcccCccChhhh
Q 013914 242 VKLKDGRTLEADIVVVGVGGRPLISLF 268 (434)
Q Consensus 242 v~~~~g~~~~~D~vi~a~G~~p~~~~~ 268 (434)
..-.+|.||.++|..|+...+
T Consensus 65 ------~~~~~d~vv~~~g~~~~~~~~ 85 (450)
T PRK14106 65 ------FLEGVDLVVVSPGVPLDSPPV 85 (450)
T ss_pred ------HhhcCCEEEECCCCCCCCHHH
Confidence 012489999999988877655
No 465
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=96.47 E-value=0.0031 Score=56.97 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCC-CCcEEEEeCCCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVK-PGELAIISKEAVAP 44 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~-~~~V~vie~~~~~~ 44 (434)
+.||+|||||..|.+.|..|+++-.+ ..+|+|+|+++...
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtyt 126 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYT 126 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCccc
Confidence 68999999999999999999876221 13499999997643
No 466
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=96.44 E-value=0.035 Score=55.15 Aligned_cols=54 Identities=30% Similarity=0.339 Sum_probs=38.8
Q ss_pred HHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCC-C--cEEECCEEEEcccCc
Q 013914 208 AAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKD-G--RTLEADIVVVGVGGR 262 (434)
Q Consensus 208 ~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~g~v~~v~~~~-g--~~~~~D~vi~a~G~~ 262 (434)
.+.+.+.+++ .||+++.++.++++.. +++.+.++...+ + ..+.++.||+|+|-.
T Consensus 131 ~~~L~~~~~~~~gi~i~~~~~v~~l~~-~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~ 188 (488)
T TIGR00551 131 ITTLVKKALNHPNIRIIEGENALDLLI-ETGRVVGVWVWNRETVETCHADAVVLATGGA 188 (488)
T ss_pred HHHHHHHHHhcCCcEEEECeEeeeeec-cCCEEEEEEEEECCcEEEEEcCEEEECCCcc
Confidence 3445555555 6899999999999876 356666665543 3 368899999999953
No 467
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.43 E-value=0.065 Score=54.43 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 197 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~ 197 (434)
-.|+|||+|..|+-+|..+++.|.+|.++++.+.
T Consensus 12 ~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~ 45 (584)
T PRK12835 12 VDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAH 45 (584)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 4799999999999999999999999999987654
No 468
>PLN02976 amine oxidase
Probab=96.41 E-value=0.0045 Score=66.86 Aligned_cols=36 Identities=22% Similarity=0.417 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
.++|+|||+|++|+++|..|.+.|++ |+|+|+++..
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~---V~VlEa~~~v 728 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFS---VTVLEARSRI 728 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCc---EEEEeeccCC
Confidence 47999999999999999999999986 9999998654
No 469
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.37 E-value=0.0031 Score=63.40 Aligned_cols=59 Identities=15% Similarity=0.228 Sum_probs=42.1
Q ss_pred HHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-c---EEECCEEEEcccCccChhhh
Q 013914 209 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-R---TLEADIVVVGVGGRPLISLF 268 (434)
Q Consensus 209 ~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g-~---~~~~D~vi~a~G~~p~~~~~ 268 (434)
.++....++.+++++.++.|.+|.. +++++.+|++.++ . .+.++.||+|.|.--...++
T Consensus 198 ~~l~~a~~r~nl~i~~~~~V~rI~~-~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LL 260 (532)
T TIGR01810 198 AYLHPAMKRPNLEVQTRAFVTKINF-EGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLL 260 (532)
T ss_pred HHhhhhccCCCeEEEeCCEEEEEEe-cCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHH
Confidence 3444444567899999999999987 3677788877443 2 35789999999964444443
No 470
>PLN02785 Protein HOTHEAD
Probab=96.37 E-value=0.0042 Score=62.68 Aligned_cols=34 Identities=18% Similarity=0.557 Sum_probs=30.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.||+||||||.||+.+|.+|++ ..+ |+|||+...
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~---VLllE~G~~ 88 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQ-NFS---VLLLERGGV 88 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhc-CCc---EEEEecCCC
Confidence 5999999999999999999999 455 999999863
No 471
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.35 E-value=0.052 Score=54.75 Aligned_cols=52 Identities=21% Similarity=0.399 Sum_probs=37.5
Q ss_pred HHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccC
Q 013914 210 FYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGG 261 (434)
Q Consensus 210 ~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~---~~g~--~~~~D~vi~a~G~ 261 (434)
.+.+.+++.||+++.++.+.++..++++++.++.. .+|+ .+.++.||+|||-
T Consensus 139 ~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 195 (543)
T PRK06263 139 GLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGG 195 (543)
T ss_pred HHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCC
Confidence 34445566789999999999987644444766653 4564 5789999999994
No 472
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.34 E-value=0.018 Score=54.58 Aligned_cols=32 Identities=28% Similarity=0.308 Sum_probs=28.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~ 195 (434)
-.|+|||+|..|+|.|.+.++.|.+.+++...
T Consensus 29 ~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred ccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 47999999999999999999999988887654
No 473
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.33 E-value=0.06 Score=54.67 Aligned_cols=52 Identities=23% Similarity=0.332 Sum_probs=38.4
Q ss_pred HHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEE---eCCCc--EEECCEEEEcccC
Q 013914 209 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK---LKDGR--TLEADIVVVGVGG 261 (434)
Q Consensus 209 ~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~---~~~g~--~~~~D~vi~a~G~ 261 (434)
+.+.+.+++.||+++.++.+.++.. +++++.++. ..+|+ .+.++.||+|+|-
T Consensus 139 ~~L~~~~~~~gi~i~~~t~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG 195 (575)
T PRK05945 139 HELVNNLRRYGVTIYDEWYVMRLIL-EDNQAKGVVMYHIADGRLEVVRAKAVMFATGG 195 (575)
T ss_pred HHHHHHHhhCCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCEEEECCCC
Confidence 3445556677899999999999876 367766664 34564 5889999999995
No 474
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=96.28 E-value=0.0013 Score=55.13 Aligned_cols=35 Identities=31% Similarity=0.283 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
.||||+|+|.+||+||+.+.++. ++.+|++||.+-
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~r-PdlkvaIIE~SV 111 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNR-PDLKVAIIESSV 111 (328)
T ss_pred cceEEECCCccccceeeeeeccC-CCceEEEEEeee
Confidence 59999999999999999999764 467799999874
No 475
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.18 E-value=0.055 Score=51.81 Aligned_cols=102 Identities=22% Similarity=0.287 Sum_probs=63.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCC---CeEEEEccCCccCCc--------------------c----CCHHHHHHH-----
Q 013914 164 GKAVVVGGGYIGLELSAALKINN---IDVSMVYPEPWCMPR--------------------L----FTADIAAFY----- 211 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g---~~v~lv~~~~~~~~~--------------------~----~~~~~~~~~----- 211 (434)
.+|+|||+|++|+.+|..|.+.- ..++++++.+.+... . .+.++.+++
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 47999999999999999998752 228888776443110 0 011222222
Q ss_pred -----------------------------HHHHHhcC---cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcc
Q 013914 212 -----------------------------EGYYANKG---IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGV 259 (434)
Q Consensus 212 -----------------------------~~~l~~~G---V~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~ 259 (434)
..++++.. |.++ .++...+....++....+...+|....||.+|+||
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~-~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat 160 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTI-REEATSVRQDTNAGGYLVTTADGPSEIADIIVLAT 160 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEE-eeeeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence 22333322 3333 33344454434566677888999999999999999
Q ss_pred cCccChh
Q 013914 260 GGRPLIS 266 (434)
Q Consensus 260 G~~p~~~ 266 (434)
|..+...
T Consensus 161 gh~~~~~ 167 (474)
T COG4529 161 GHSAPPA 167 (474)
T ss_pred cCCCCCc
Confidence 9765443
No 476
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=96.12 E-value=0.027 Score=52.64 Aligned_cols=34 Identities=38% Similarity=0.547 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 197 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~ 197 (434)
.+|+|||||..|+-.|..|.+.|.+|.+++....
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESRED 36 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 5899999999999999999999999999987543
No 477
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.11 E-value=0.086 Score=53.58 Aligned_cols=31 Identities=29% Similarity=0.472 Sum_probs=27.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCC---CeEEEEccC
Q 013914 165 KAVVVGGGYIGLELSAALKINN---IDVSMVYPE 195 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g---~~v~lv~~~ 195 (434)
.|+|||+|..|+-+|..+++.| .+|.++++.
T Consensus 7 DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~ 40 (577)
T PRK06069 7 DVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKT 40 (577)
T ss_pred CEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcc
Confidence 6999999999999999999988 799998764
No 478
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.07 E-value=0.12 Score=52.63 Aligned_cols=55 Identities=15% Similarity=0.191 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcCcEEEcCCeEEEEEecCC---CcEEEEEe---CCCc--EEECCEEEEcccCc
Q 013914 208 AAFYEGYYANKGIKIIKGTVAVGFTTNAD---GEVKEVKL---KDGR--TLEADIVVVGVGGR 262 (434)
Q Consensus 208 ~~~~~~~l~~~GV~~~~~~~v~~i~~~~~---g~v~~v~~---~~g~--~~~~D~vi~a~G~~ 262 (434)
.+.+.+.+++.||+++.++.+.++..+++ |++.++.. .+|+ .+.++.||+|||--
T Consensus 143 ~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 205 (583)
T PRK08205 143 LQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGS 205 (583)
T ss_pred HHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCC
Confidence 34455566778999999999999876432 77777754 3554 57899999999953
No 479
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.06 E-value=0.09 Score=53.88 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=28.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~ 195 (434)
-.|+|||+|..|+-+|..+++.|.+|.++++.
T Consensus 9 ~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~ 40 (626)
T PRK07803 9 YDVVVIGAGGAGLRAAIEARERGLRVAVVCKS 40 (626)
T ss_pred ecEEEECcCHHHHHHHHHHHHCCCCEEEEecc
Confidence 36999999999999999999999999998765
No 480
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.05 E-value=0.031 Score=55.19 Aligned_cols=130 Identities=16% Similarity=0.143 Sum_probs=0.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhcC
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 86 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (434)
+|+|||.|++|+++|+.|.++|.+ |+++|++.... .......++..|
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~---V~~~D~~~~~~------------------------------~~~~~~~l~~~g 48 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWE---VVVSDRNDSPE------------------------------LLERQQELEQEG 48 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCE---EEEECCCCchh------------------------------hHHHHHHHHHcC
Q ss_pred cEEEcCCeeE------EEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHh
Q 013914 87 IELILSTEIV------RADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA 160 (434)
Q Consensus 87 v~~~~~~~v~------~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~ 160 (434)
+.+..+.... . .-.+|.+|+.+|..+..|. +.-....++-.....+-..+...
T Consensus 49 i~~~~g~~~~~~~~~~~--------------~~~~d~vv~s~gi~~~~~~---~~~a~~~~i~v~~~~~~~~~~~~---- 107 (459)
T PRK02705 49 ITVKLGKPLELESFQPW--------------LDQPDLVVVSPGIPWDHPT---LVELRERGIEVIGEIELAWRALK---- 107 (459)
T ss_pred CEEEECCccchhhhhHH--------------hhcCCEEEECCCCCCCCHH---HHHHHHcCCcEEEhHHHHHHhhc----
Q ss_pred CCCCcEEEECCC---HHHHHHHHHHHhCCCeEEE
Q 013914 161 KKNGKAVVVGGG---YIGLELSAALKINNIDVSM 191 (434)
Q Consensus 161 ~~~~~v~ViG~g---~~~~e~a~~l~~~g~~v~l 191 (434)
..+.+.|-|+- -+.--++..|...|.+...
T Consensus 108 -~~~~I~VTGT~GKTTTt~ml~~iL~~~g~~~~~ 140 (459)
T PRK02705 108 -HIPWVGITGTNGKTTVTALLAHILQAAGLNAPA 140 (459)
T ss_pred -CCCEEEEeCCCchHHHHHHHHHHHHHcCCCeEE
No 481
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=95.92 E-value=0.025 Score=59.31 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCc
Q 013914 165 KAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPW 197 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~--g~~v~lv~~~~~ 197 (434)
+|+|||+|+.|+-+|..|++. |.+|+++++.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 689999999999999999998 899999998765
No 482
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=95.84 E-value=0.015 Score=55.89 Aligned_cols=58 Identities=21% Similarity=0.192 Sum_probs=45.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC-CccCCccCCHHHHHHHHHHHHhcCc
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE-PWCMPRLFTADIAAFYEGYYANKGI 220 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~-~~~~~~~~~~~~~~~~~~~l~~~GV 220 (434)
...|+|||+|+.|+-+|..|++.|.+|+++++. +.+.+......+...-.+.|++.|+
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~ 60 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGL 60 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCC
Confidence 357999999999999999999999999999997 3444432233445556677888887
No 483
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=95.82 E-value=0.013 Score=54.48 Aligned_cols=102 Identities=15% Similarity=0.196 Sum_probs=67.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-CCCcE-EEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhH
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGV-KPGEL-AIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY 82 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~-~~~~V-~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (434)
+..|-|||+|+-|--.|+.|.+.-. ...+| .|++..-. . . .-+|.+- .....+.+
T Consensus 347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~n----m---~---------kiLPeyl-------s~wt~eki 403 (659)
T KOG1346|consen 347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYN----M---E---------KILPEYL-------SQWTIEKI 403 (659)
T ss_pred cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCC----h---h---------hhhHHHH-------HHHHHHHH
Confidence 4679999999999999999987621 22233 34544311 0 0 0011110 01223456
Q ss_pred hhcCcEEEcCCeeEEEECCCCE--EEccCCcEEEcceEEEecCCCcccc
Q 013914 83 KEKGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 83 ~~~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
++.||.++.+..|.++....+. +.+.||.+++.|.+|+|+|..|+..
T Consensus 404 r~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~e 452 (659)
T KOG1346|consen 404 RKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSE 452 (659)
T ss_pred HhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchh
Confidence 6789999998888777665544 5678999999999999999998743
No 484
>PRK08071 L-aspartate oxidase; Provisional
Probab=95.79 E-value=0.08 Score=52.88 Aligned_cols=31 Identities=16% Similarity=0.396 Sum_probs=25.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~ 195 (434)
..|+|||+|..|+-+|..+.+ |.+|.++++.
T Consensus 4 ~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~ 34 (510)
T PRK08071 4 ADVIIIGSGIAALTVAKELCH-EYNVIIITKK 34 (510)
T ss_pred cCEEEECccHHHHHHHHHhhc-CCCEEEEecc
Confidence 478999999999999988876 7888887764
No 485
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=95.73 E-value=0.14 Score=52.83 Aligned_cols=47 Identities=11% Similarity=0.160 Sum_probs=35.9
Q ss_pred HHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEccc
Q 013914 213 GYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVG 260 (434)
Q Consensus 213 ~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~---~~g~--~~~~D~vi~a~G 260 (434)
+.+++.||+++.++.+.++.. ++|++.++.. .+|+ .+.++.||+|||
T Consensus 166 ~~~~~~gv~i~~~~~~~~Li~-~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATG 217 (657)
T PRK08626 166 NEAIKLGVPVHDRKEAIALIH-DGKRCYGAVVRCLITGELRAYVAKATLIATG 217 (657)
T ss_pred HHHHhCCCEEEeeEEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCeEEECCC
Confidence 445667899999999999886 4677767654 3564 467999999999
No 486
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=95.67 E-value=0.23 Score=50.25 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=29.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 196 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~ 196 (434)
-.|+|||+|..|+-+|..+++.|.+|.++++.+
T Consensus 5 ~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 5 ADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 368999999999999999999999999987765
No 487
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=95.65 E-value=0.034 Score=52.27 Aligned_cols=102 Identities=22% Similarity=0.359 Sum_probs=61.5
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CeEEEEccCCcc--CCccC--------------------------------------
Q 013914 165 KAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWC--MPRLF-------------------------------------- 203 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g-~~v~lv~~~~~~--~~~~~-------------------------------------- 203 (434)
.++.||.|+..+-+|..+.+.+ .++.++++.+.+ .+.++
T Consensus 4 D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl~~ 83 (341)
T PF13434_consen 4 DLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRLYE 83 (341)
T ss_dssp SEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-HHH
T ss_pred eEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCChhh
Confidence 5789999999999999998887 788888876543 11110
Q ss_pred ----------CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCC--cEEEEEeC----CCcEEECCEEEEcccCccChh
Q 013914 204 ----------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG--EVKEVKLK----DGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 204 ----------~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g--~v~~v~~~----~g~~~~~D~vi~a~G~~p~~~ 266 (434)
-.+..+++.-..++..-.+.++.+|++|....++ ....|.+. +++.+.|+.||+++|..|...
T Consensus 84 f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~iP 162 (341)
T PF13434_consen 84 FYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRIP 162 (341)
T ss_dssp HHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE---
T ss_pred hhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCCC
Confidence 0133455555555666558889999999874443 34566662 346899999999999888764
No 488
>PRK08163 salicylate hydroxylase; Provisional
Probab=95.65 E-value=0.019 Score=55.44 Aligned_cols=37 Identities=27% Similarity=0.310 Sum_probs=34.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM 199 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~ 199 (434)
+.+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~ 40 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG 40 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccc
Confidence 5689999999999999999999999999999987654
No 489
>PRK07395 L-aspartate oxidase; Provisional
Probab=95.64 E-value=0.084 Score=53.21 Aligned_cols=44 Identities=27% Similarity=0.485 Sum_probs=31.3
Q ss_pred cCcEEEcCCeEEEEEecC-CCcEEEEEe-CCCc--EEECCEEEEcccC
Q 013914 218 KGIKIIKGTVAVGFTTNA-DGEVKEVKL-KDGR--TLEADIVVVGVGG 261 (434)
Q Consensus 218 ~GV~~~~~~~v~~i~~~~-~g~v~~v~~-~~g~--~~~~D~vi~a~G~ 261 (434)
.||+++.++.+.++..++ +|++.++.. .+|+ .+.++.||+|||-
T Consensus 148 ~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG 195 (553)
T PRK07395 148 PNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGG 195 (553)
T ss_pred CCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCC
Confidence 378888888888876533 367777654 3453 3789999999995
No 490
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=95.61 E-value=0.12 Score=48.91 Aligned_cols=83 Identities=22% Similarity=0.262 Sum_probs=61.2
Q ss_pred HHHHHHHHhCCCeEEEEccCCccCCcc-CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-cEEECC
Q 013914 176 LELSAALKINNIDVSMVYPEPWCMPRL-FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-RTLEAD 253 (434)
Q Consensus 176 ~e~a~~l~~~g~~v~lv~~~~~~~~~~-~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g-~~~~~D 253 (434)
-++...+.+.|.... .++..++.|.. -..++.+.+...+++.||+++++++|++|+. ++ ..+.+.++ ..+.+|
T Consensus 57 ~d~~~fF~~~Gi~~~-~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~~--~~--~~v~~~~~~~~~~a~ 131 (376)
T TIGR03862 57 VALQDWARGLGIETF-VGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQG--GT--LRFETPDGQSTIEAD 131 (376)
T ss_pred HHHHHHHHHCCCceE-ECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEeC--Cc--EEEEECCCceEEecC
Confidence 456677888887643 44555666532 3568889999999999999999999999932 33 45666443 469999
Q ss_pred EEEEcccCcc
Q 013914 254 IVVVGVGGRP 263 (434)
Q Consensus 254 ~vi~a~G~~p 263 (434)
.||+|+|-.+
T Consensus 132 ~vIlAtGG~s 141 (376)
T TIGR03862 132 AVVLALGGAS 141 (376)
T ss_pred EEEEcCCCcc
Confidence 9999999643
No 491
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=95.55 E-value=0.071 Score=50.06 Aligned_cols=56 Identities=21% Similarity=0.293 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
+..+...+.+.+++.|++++.+++|+++.. .++.+..|.+.+| ++.+|.||+|+|.
T Consensus 136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~-~~~~~~~v~~~~g-~~~a~~vV~a~G~ 191 (337)
T TIGR02352 136 PRALLKALEKALEKLGVEIIEHTEVQHIEI-RGEKVTAIVTPSG-DVQADQVVLAAGA 191 (337)
T ss_pred hHHHHHHHHHHHHHcCCEEEccceEEEEEe-eCCEEEEEEcCCC-EEECCEEEEcCCh
Confidence 678888999999999999999999999986 4555667787777 7999999999994
No 492
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=95.49 E-value=0.021 Score=54.54 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=31.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 198 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~ 198 (434)
++|+|||+|+.|+++|..|++.|.+|++++..+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 58999999999999999999999999999976554
No 493
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.41 E-value=0.099 Score=51.38 Aligned_cols=38 Identities=21% Similarity=0.203 Sum_probs=32.4
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
|..+.+.++|+|+|..|+++|..|++.|.+ |++.|++.
T Consensus 1 ~~~~~k~v~v~G~g~~G~s~a~~l~~~G~~---V~~~d~~~ 38 (447)
T PRK02472 1 TEYQNKKVLVLGLAKSGYAAAKLLHKLGAN---VTVNDGKP 38 (447)
T ss_pred CCcCCCEEEEEeeCHHHHHHHHHHHHCCCE---EEEEcCCC
Confidence 555567899999999999999999999986 88888653
No 494
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.40 E-value=0.092 Score=42.91 Aligned_cols=83 Identities=20% Similarity=0.254 Sum_probs=54.8
Q ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC
Q 013914 166 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK 245 (434)
Q Consensus 166 v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~ 245 (434)
++|+|+|.+|.-+|..|.+.|.+|+++.+.+ ..+.+++.|+.+.....-..+.. .....
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~--------------~~~~~~~~g~~~~~~~~~~~~~~-------~~~~~ 59 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP--------------RLEAIKEQGLTITGPDGDETVQP-------PIVIS 59 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH--------------HHHHHHHHCEEEEETTEEEEEEE-------EEEES
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc--------------cHHhhhheeEEEEecccceeccc-------ccccC
Confidence 6899999999999999999999999997642 11337888998877662122211 11121
Q ss_pred CC--cEEECCEEEEcccCccChhhhh
Q 013914 246 DG--RTLEADIVVVGVGGRPLISLFK 269 (434)
Q Consensus 246 ~g--~~~~~D~vi~a~G~~p~~~~~~ 269 (434)
.. ..-.+|.|++|+=.....+.++
T Consensus 60 ~~~~~~~~~D~viv~vKa~~~~~~l~ 85 (151)
T PF02558_consen 60 APSADAGPYDLVIVAVKAYQLEQALQ 85 (151)
T ss_dssp SHGHHHSTESEEEE-SSGGGHHHHHH
T ss_pred cchhccCCCcEEEEEecccchHHHHH
Confidence 11 2345899999987655555444
No 495
>PLN02815 L-aspartate oxidase
Probab=95.40 E-value=0.16 Score=51.65 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=27.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~ 195 (434)
-.|+|||+|..|+-.|..+++.| +|.++++.
T Consensus 30 ~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~ 60 (594)
T PLN02815 30 FDFLVIGSGIAGLRYALEVAEYG-TVAIITKD 60 (594)
T ss_pred cCEEEECccHHHHHHHHHHhhCC-CEEEEECC
Confidence 47999999999999999999999 78888764
No 496
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=95.40 E-value=0.23 Score=50.50 Aligned_cols=31 Identities=19% Similarity=0.380 Sum_probs=26.7
Q ss_pred cEEEECCCHHHHHHHHHHHhC--CCeEEEEccC
Q 013914 165 KAVVVGGGYIGLELSAALKIN--NIDVSMVYPE 195 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~--g~~v~lv~~~ 195 (434)
.|+|||+|..|+-+|..+++. |.+|+++++.
T Consensus 6 DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~ 38 (582)
T PRK09231 6 DLAIIGAGGAGLRAAIAAAEANPNLKIALISKV 38 (582)
T ss_pred eEEEECccHHHHHHHHHHHHhCCCCcEEEEEcc
Confidence 589999999999999999876 4789988775
No 497
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=95.36 E-value=0.26 Score=50.05 Aligned_cols=43 Identities=30% Similarity=0.388 Sum_probs=31.5
Q ss_pred cCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccC
Q 013914 218 KGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGG 261 (434)
Q Consensus 218 ~GV~~~~~~~v~~i~~~~~g~v~~v~~---~~g~--~~~~D~vi~a~G~ 261 (434)
.+|+++.++.+.++.. +++++.++.. .+|+ .+.++.||+|+|-
T Consensus 146 ~~i~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 193 (580)
T TIGR01176 146 PQIMRYDEWFVTDLLV-DDGRVCGLVAIEMAEGRLVTILADAVVLATGG 193 (580)
T ss_pred CCCEEEeCeEEEEEEe-eCCEEEEEEEEEcCCCcEEEEecCEEEEcCCC
Confidence 3678888888888776 3677776643 4563 5789999999994
No 498
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=95.36 E-value=0.016 Score=50.56 Aligned_cols=91 Identities=15% Similarity=0.239 Sum_probs=57.7
Q ss_pred EEEECCCHHHHHHHHHHHhC--CCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcE----------EE--cCCeEEEE
Q 013914 166 AVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIK----------II--KGTVAVGF 231 (434)
Q Consensus 166 v~ViG~g~~~~e~a~~l~~~--g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~----------~~--~~~~v~~i 231 (434)
.+|||||..|+.+|..|+.+ ..++.++..++-+-.- .-.+.+-+.+++..|+ +. .+ .|..+
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~vksv----tn~~~i~~ylekfdv~eq~~~elg~~f~~~~~-~v~~~ 76 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSV----TNYQKIGQYLEKFDVKEQNCHELGPDFRRFLN-DVVTW 76 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHH----hhHHHHHHHHHhcCccccchhhhcccHHHHHH-hhhhh
Confidence 58999999999999999876 4577777765433211 1112223333333332 11 01 13333
Q ss_pred EecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013914 232 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 232 ~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
.. ....+.+.+|.++.++.+++|+|.+|-.
T Consensus 77 ~s----~ehci~t~~g~~~ky~kKOG~tg~kPkl 106 (334)
T KOG2755|consen 77 DS----SEHCIHTQNGEKLKYFKLCLCTGYKPKL 106 (334)
T ss_pred cc----ccceEEecCCceeeEEEEEEecCCCcce
Confidence 22 2247889999999999999999999864
No 499
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.36 E-value=0.15 Score=50.09 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=32.4
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
|....++++|+|.|.+|+++|..|+++|.+ |++.|..+
T Consensus 1 ~~~~~~~~~v~G~g~~G~~~a~~l~~~g~~---v~~~d~~~ 38 (445)
T PRK04308 1 MTFQNKKILVAGLGGTGISMIAYLRKNGAE---VAAYDAEL 38 (445)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCC
Confidence 444467899999999999999999999986 89988764
No 500
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.35 E-value=0.025 Score=55.80 Aligned_cols=40 Identities=28% Similarity=0.362 Sum_probs=36.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR 201 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~ 201 (434)
..++|+|||+|.+|+-+|..|.+.|.+|++++.++++..+
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGR 53 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGR 53 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCce
Confidence 4679999999999999999999999999999998887544
Done!