BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013918
(434 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 220 bits (561), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 152/426 (35%), Positives = 238/426 (55%), Gaps = 32/426 (7%)
Query: 4 AVEVEILSKETIKPSFPTPHQLRNFQLSILDQIALPVYISNIFLYKANDEDDGDLDAKTE 63
A ++E +S+E I PS PTP L+ +++S LDQ+ L +I I Y + D +LD
Sbjct: 2 APQMEKVSEELILPSSPTPQSLKCYKISHLDQLLLTCHIPFILFYP--NPLDSNLDPA-- 57
Query: 64 RISQRLKSSLSETLAQFYPFAGKIKDEVSIECNDDGVEYIEARANRLLSEYLQ------K 117
+ SQ LK SLS+ L FYP AG+I S++CND GV ++EAR LS+ +Q K
Sbjct: 58 QTSQHLKQSLSKVLTHFYPLAGRINVNSSVDCNDSGVPFVEARVQAQLSQAIQNVVELEK 117
Query: 118 PDQNILKEFHPFDTENPIGSTGPILIVQVTFFKCGGVALEISSSHKLIDGMSLATFINIW 177
DQ + +P + + P L V+++FF+CGG A+ ++ SHK+ D +SLATF+N W
Sbjct: 118 LDQYLPSAAYP-GGKIEVNEDVP-LAVKISFFECGGTAIGVNLSHKIADVLSLATFLNAW 175
Query: 178 AATARAQSSKAIMVPEF-VTASIFPPSEFFVAFPVHLSRCEQI---RFVFDPSKINELKA 233
AT R ++ I++P F + A FPP + + L E + RFVFD KI L+A
Sbjct: 176 TATCRGETE--IVLPNFDLAARHFPPVDNTPS--PELVPDENVVMKRFVFDKEKIGALRA 231
Query: 234 KVASASVPKP-SRVEALTALIWKCARDVSGSTRGSTRASLLVHAVNLRTLVVPPLPNNSV 292
+ +SAS K SRV+ + A IWK DV+ + G+ ++V AVNLR+ + PPLP+ ++
Sbjct: 232 QASSASEEKNFSRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQAVNLRSRMNPPLPHYAM 291
Query: 293 GNNVGYL-SAQTSDKEIELHELVCILRKAKAEFSKNGLQNLLETKSIFNIPESIKDKLER 351
GN L +A ++ + + +L+ LR + + + LL+ + +LE
Sbjct: 292 GNIATLLFAAVDAEWDKDFPDLIGPLRTSLEKTEDDHNHELLKGMTCLY-------ELEP 344
Query: 352 DEIDFFTFSSVLRFPFYEAAEFGWGKPLHVTFPNYVFPNLFLLIDTKDGEGIEALVTLRT 411
E+ +F+S R FY+ +FGWGKPL + N LL+DT+ G+G+EA + +
Sbjct: 345 QEL--LSFTSWCRLGFYD-LDFGWGKPLSACTTTFPKRNAALLMDTRSGDGVEAWLPMAE 401
Query: 412 EDMALF 417
++MA+
Sbjct: 402 DEMAML 407
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 110/447 (24%), Positives = 189/447 (42%), Gaps = 48/447 (10%)
Query: 3 GAVEVEILSKETIKPSFPTPHQLRNFQLSILDQIALPVYISNIFLYKANDEDDGDLDAKT 62
GA+++E+ ++P+ TP RN S +D + + +++ Y+ + DAK
Sbjct: 1 GAMKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTGSSNF-FDAKV 57
Query: 63 ERISQRLKSSLSETLAQFYPFAGKIKDE----VSIECNDDGVEYIEARANRLLSEYLQ-K 117
LK +LS L FYP AG++K + + IECN +GV ++EA ++ ++ ++
Sbjct: 58 ------LKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFA 111
Query: 118 PDQNILKEFHPFDTENPIGSTGPILIVQVTFFKCGGVALEISSSHKLIDGMSLATFINIW 177
P + + D I S +L++QVT+FKCGGV+L + H DG S FIN W
Sbjct: 112 PTLELRRLIPAVDYSQGISSYA-LLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSW 170
Query: 178 AATARAQSSKAIMVPEFVTASIF----PPSEFFVAF----PVHLSRCEQIR--------- 220
+ AR + +P F+ ++ PP F P L Q
Sbjct: 171 SDMARGLD---VTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALKVSPQTAKSDSVPETA 227
Query: 221 ---FVFDPSKINELKAKVA-SASVPKPSRVEALTALIWKCARDVSGSTRGSTRASLLVHA 276
F +I+ LKAK + S E L +W+CA G + + L A
Sbjct: 228 VSIFKLTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLE--VDQGTKLYIA 285
Query: 277 VNLRTLVVPPLPNNSVGNNVGYLSAQTSDKEIELHELVCILRKAKAEFSKNGLQNLLETK 336
+ R + P LP GN + + ++E + K ++ L
Sbjct: 286 TDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSAL 345
Query: 337 SIFNIPESIKDKLERDEIDF----FTFSSVLRFPFYEAAEFGWGKPLHVTFPNYVFPNLF 392
+ +K L R F +S +R P ++ A+FGWG+P+ + + L
Sbjct: 346 DYLELQPDLK-ALVRGAHTFKCPNLGITSWVRLPIHD-ADFGWGRPIFMGPGGIAYEGLS 403
Query: 393 LLIDTKDGEG-IEALVTLRTEDMALFE 418
++ + +G + ++L+ E M LF+
Sbjct: 404 FILPSPTNDGSMSVAISLQGEHMKLFQ 430
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 109/447 (24%), Positives = 190/447 (42%), Gaps = 48/447 (10%)
Query: 3 GAVEVEILSKETIKPSFPTPHQLRNFQLSILDQIALPVYISNIFLYKANDEDDGDLDAKT 62
G++++E+ ++P+ TP RN S +D + + +++ Y+ + DAK
Sbjct: 4 GSMKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTGSSN-FFDAKV 60
Query: 63 ERISQRLKSSLSETLAQFYPFAGKIKDE----VSIECNDDGVEYIEARANRLLSEYLQ-K 117
LK +LS L FYP AG++K + + IECN +GV ++EA ++ ++ ++
Sbjct: 61 ------LKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFA 114
Query: 118 PDQNILKEFHPFDTENPIGSTGPILIVQVTFFKCGGVALEISSSHKLIDGMSLATFINIW 177
P + + D I S +L++QVT+FKCGGV+L + H DG S FIN W
Sbjct: 115 PTLELRRLIPAVDYSQGISSYA-LLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSW 173
Query: 178 AATARAQSSKAIMVPEFVTASIF----PPSEFFVAF----PVHLSRCEQIR--------- 220
+ AR + +P F+ ++ PP F P L+ Q
Sbjct: 174 SDMARGLD---VTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETA 230
Query: 221 ---FVFDPSKINELKAKVA-SASVPKPSRVEALTALIWKCARDVSGSTRGSTRASLLVHA 276
F +I+ LKAK + S E L +W+CA G + + L A
Sbjct: 231 VSIFKLTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLE--VDQGTKLYIA 288
Query: 277 VNLRTLVVPPLPNNSVGNNVGYLSAQTSDKEIELHELVCILRKAKAEFSKNGLQNLLETK 336
+ R + P LP GN + + ++E + K ++ L
Sbjct: 289 TDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSAL 348
Query: 337 SIFNIPESIKDKLERDEIDF----FTFSSVLRFPFYEAAEFGWGKPLHVTFPNYVFPNLF 392
+ +K L R F +S +R P ++ A+FGWG+P+ + + L
Sbjct: 349 DYLELQPDLK-ALVRGAHTFKXPNLGITSWVRLPIHD-ADFGWGRPIFMGPGGIAYEGLS 406
Query: 393 LLIDTKDGEG-IEALVTLRTEDMALFE 418
++ + +G + ++L+ E M LF+
Sbjct: 407 FILPSPTNDGSMSVAISLQGEHMKLFQ 433
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 111 bits (278), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 108/447 (24%), Positives = 189/447 (42%), Gaps = 48/447 (10%)
Query: 3 GAVEVEILSKETIKPSFPTPHQLRNFQLSILDQIALPVYISNIFLYKANDEDDGDLDAKT 62
G++++E+ ++P+ TP RN S +D + + +++ Y+ + DAK
Sbjct: 4 GSMKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTGSSN-FFDAKV 60
Query: 63 ERISQRLKSSLSETLAQFYPFAGKIKDE----VSIECNDDGVEYIEARANRLLSEYLQ-K 117
LK +LS L FYP AG++K + + IECN +GV ++EA ++ ++ ++
Sbjct: 61 ------LKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFA 114
Query: 118 PDQNILKEFHPFDTENPIGSTGPILIVQVTFFKCGGVALEISSSHKLIDGMSLATFINIW 177
P + + D I S +L++QVT+FK GGV+L + H DG S FIN W
Sbjct: 115 PTLELRRLIPAVDYSQGISSYA-LLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSW 173
Query: 178 AATARAQSSKAIMVPEFVTASIF----PPSEFFVAF----PVHLSRCEQIR--------- 220
+ AR + +P F+ ++ PP F P L+ Q
Sbjct: 174 SDMARGLD---VTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETA 230
Query: 221 ---FVFDPSKINELKAKVA-SASVPKPSRVEALTALIWKCARDVSGSTRGSTRASLLVHA 276
F +I+ LKAK + S E L +W+CA G + + L A
Sbjct: 231 VSIFKLTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLE--VDQGTKLYIA 288
Query: 277 VNLRTLVVPPLPNNSVGNNVGYLSAQTSDKEIELHELVCILRKAKAEFSKNGLQNLLETK 336
+ R + P LP GN + + ++E + K ++ L
Sbjct: 289 TDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSAL 348
Query: 337 SIFNIPESIKDKLERDEIDF----FTFSSVLRFPFYEAAEFGWGKPLHVTFPNYVFPNLF 392
+ +K L R F +S +R P ++ A+FGWG+P+ + + L
Sbjct: 349 DYLELQPDLK-ALVRGAHTFKXPNLGITSWVRLPIHD-ADFGWGRPIFMGPGGIAYEGLS 406
Query: 393 LLIDTKDGEG-IEALVTLRTEDMALFE 418
++ + +G + ++L+ E M LF+
Sbjct: 407 FILPSPTNDGSMSVAISLQGEHMKLFQ 433
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 92/370 (24%), Positives = 146/370 (39%), Gaps = 78/370 (21%)
Query: 62 TERISQRLKSSLSETLAQFYPFAGKI--------KDEVSIECNDDGVEYIEARANRLLSE 113
TE + +K SLS TL FYPF GK+ K E+ D V A N L+E
Sbjct: 58 TETVVPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICY-VEGDSVAVTFAECNLDLNE 116
Query: 114 YLQKPDQNILK--EFHPFDTENPIGSTG---PILIVQVTFFKCGGVALEISSSHKLIDGM 168
+N K + P E+ S P+ VQVT F G+A+ I++ H L D
Sbjct: 117 LTGNHPRNCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDAS 176
Query: 169 SLATFINIWAATARAQSSKAIMVPEFVTASIFPPSEFFVAFPV----HLSRC-------- 216
+ F+ W + AR+ ++ F+ P + + +P+ +L R
Sbjct: 177 TRFCFLKAWTSIARSGNNDE----SFLANGTRPLYDRIIKYPMLDEAYLKRAKVESFNED 232
Query: 217 ----------EQIR--FVFDPSKINELKAKVASASVPKPSRVEALT---ALIWKCARDVS 261
+++R F+ + IN+LK +V A +P V + T A IW C
Sbjct: 233 YVTQSLAGPSDKLRATFILTRAVINQLKDRVL-AQLPTLEYVSSFTVACAYIWSCI---- 287
Query: 262 GSTRGSTRASLLVHAVNLRTLVVPPLPNNSVGNNVGYLSAQTSDKEIELHELVCILRKAK 321
+ + + L ++ R + PP+P GN VG +A + E K
Sbjct: 288 -AKSRNDKLQLFGFPIDRRARMKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLI 346
Query: 322 AEFSKNGLQNLLETKSIFNIPESIKDKLERDEIDFFT-------------FSSVLRFPFY 368
E NL +T + + KD + +D+++ F S + FY
Sbjct: 347 GE-------NLHKTLTDY------KDGVLKDDMESFNDLVSEGMPTTMTWVSGTPKLRFY 393
Query: 369 EAAEFGWGKP 378
+ +FGWGKP
Sbjct: 394 D-MDFGWGKP 402
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 92/370 (24%), Positives = 143/370 (38%), Gaps = 78/370 (21%)
Query: 62 TERISQRLKSSLSETLAQFYPFAGKI--------KDEVSIECNDDGVEYIEARANRLLSE 113
TE + +K SLS TL FYPF GK+ K E+ D V A N L+E
Sbjct: 58 TETVVPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICY-VEGDSVAVTFAECNLDLNE 116
Query: 114 YLQKPDQNILKEFH--PFDTENPIGSTG---PILIVQVTFFKCGGVALEISSSHKLIDGM 168
+N K + P E+ S P+ VQVT F G+A+ I++ H L D
Sbjct: 117 LTGNHPRNCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDAS 176
Query: 169 SLATFINIWAATARAQSSKAIMVPEFVTASIFPPSEFFVAFP----VHLSRC-------- 216
+ F+ W + AR+ ++ F+ P + + +P +L R
Sbjct: 177 TRFCFLKAWTSIARSGNNDE----SFLANGTRPLYDRIIKYPXLDEAYLKRAKVESFNED 232
Query: 217 ----------EQIR--FVFDPSKINELKAKVASASVPKPSRVEALT---ALIWKCARDVS 261
+++R F+ + IN+LK +V A +P V + T A IW C
Sbjct: 233 YVTQSLAGPSDKLRATFILTRAVINQLKDRVL-AQLPTLEYVSSFTVACAYIWSCI---- 287
Query: 262 GSTRGSTRASLLVHAVNLRTLVVPPLPNNSVGNNVGYLSAQTSDKEIELHELVCILRKAK 321
+ + + L ++ R PP+P GN VG +A + E K
Sbjct: 288 -AKSRNDKLQLFGFPIDRRARXKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLI 346
Query: 322 AEFSKNGLQNLLETKSIFNIPESIKDKLERDEIDFFT-------------FSSVLRFPFY 368
E NL +T + + KD + +D+ + F S + FY
Sbjct: 347 GE-------NLHKTLTDY------KDGVLKDDXESFNDLVSEGXPTTXTWVSGTPKLRFY 393
Query: 369 EAAEFGWGKP 378
+ +FGWGKP
Sbjct: 394 D-XDFGWGKP 402
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 92/386 (23%), Positives = 146/386 (37%), Gaps = 86/386 (22%)
Query: 69 LKSSLSETLAQFYPFAGKIKDEVSIECNDDGVEYIEAR------ANRLLSEYLQKPDQNI 122
LK SLS TL + P AG ++ C D Y E R + + SE D N
Sbjct: 60 LKDSLSLTLKYYLPLAG------NVACPQDWSGYPELRYVTGNSVSVIFSE--SDXDFNY 111
Query: 123 LKEFHPFDTEN--------------PIGSTGPILIVQVTFFKCGGVALEISSSHKLIDGM 168
L +HP +T++ P P+L +QVT F G+++ ++ H DG
Sbjct: 112 LIGYHPRNTKDFYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGA 171
Query: 169 SLATFINIWAATARAQSSKAIMVPEF--------------VTASIFPPSEFFVAFPVHLS 214
++ F+ WA + + + EF V SI+ + + H
Sbjct: 172 TIVKFVRAWALLNKFGGDEQFLANEFIPFYDRSVIKDPNGVGXSIWNEXKKY----KHXX 227
Query: 215 RCEQI---------RFVFDPSKINELKAKVASASVPKPSRVEALT---ALIWKC---ARD 259
+ + F+ I +LK V + PK + V + T A +W C +
Sbjct: 228 KXSDVVTPPDKVRGTFIITRHDIGKLKNLVLTRR-PKLTHVTSFTVTCAYVWTCIIKSEA 286
Query: 260 VSGSTRGSTRASLLVHAVNLRTLVVPPLPNNSVGNN-VGYLSAQTSDKEIELHELVCILR 318
+G A + R PPLP + GN VGY+ A+T ++ E I
Sbjct: 287 ATGEEIDENGXEFFGCAADCRAQFNPPLPPSYFGNALVGYV-ARTRQVDLAGKEGFTIAV 345
Query: 319 KAKAEFSKNGLQN--LLETKSIFNIPESIKDKLERDEIDFFTFSSVLRFPFYE--AAEFG 374
+ E + ++ + + S F E D++D SV P + AA+FG
Sbjct: 346 ELIGEAIRKRXKDEEWILSGSWFK---------EYDKVDAKRSLSVAGSPKLDLYAADFG 396
Query: 375 WGKPLHVTFPNYVFPNLFLLIDTKDG 400
WG+P + F+ ID DG
Sbjct: 397 WGRPEKLE---------FVSIDNDDG 413
>pdb|3FE4|A Chain A, Crystal Structure Of Human Carbonic Anhydrase Vi
pdb|3FE4|B Chain B, Crystal Structure Of Human Carbonic Anhydrase Vi
Length = 278
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 139 GPILIVQVTFFKCGGVALEISSSHKLIDGMSLATFINIWAATARAQS--------SKAIM 190
G + I Q F GG + EIS S +DG+ I+I ++ +S +
Sbjct: 83 GTVYIAQQMHFHWGGASSEISGSEHTVDGIRHVIEIHIVHYNSKYKSYDIAQDAPDGLAV 142
Query: 191 VPEFVTASIFPPSEFFVAFPVHLS 214
+ FV +P + ++ F HL+
Sbjct: 143 LAAFVEVKNYPENTYYSNFISHLA 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,029,734
Number of Sequences: 62578
Number of extensions: 470932
Number of successful extensions: 1237
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1209
Number of HSP's gapped (non-prelim): 10
length of query: 434
length of database: 14,973,337
effective HSP length: 102
effective length of query: 332
effective length of database: 8,590,381
effective search space: 2852006492
effective search space used: 2852006492
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)