Query 013919
Match_columns 434
No_of_seqs 150 out of 1382
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 08:42:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013919.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013919hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304 Amino acid transporter 100.0 2.7E-57 5.8E-62 427.5 32.7 382 43-430 44-449 (449)
2 PTZ00206 amino acid transporte 100.0 2.4E-56 5.3E-61 441.8 33.6 386 45-431 59-465 (467)
3 KOG1303 Amino acid transporter 100.0 4.5E-53 9.8E-58 406.4 31.7 389 42-433 34-437 (437)
4 PLN03074 auxin influx permease 100.0 8.3E-49 1.8E-53 386.1 31.3 381 42-434 42-455 (473)
5 PF01490 Aa_trans: Transmembra 100.0 9.5E-53 2.1E-57 414.7 -0.7 380 44-427 1-408 (409)
6 KOG4303 Vesicular inhibitory a 100.0 1.1E-46 2.4E-51 334.8 9.2 385 40-434 111-518 (524)
7 KOG1305 Amino acid transporter 100.0 1.7E-43 3.7E-48 338.7 25.1 386 44-433 4-408 (411)
8 COG0814 SdaC Amino acid permea 100.0 2.2E-32 4.8E-37 265.9 33.7 380 43-426 6-411 (415)
9 PF03222 Trp_Tyr_perm: Tryptop 100.0 4.4E-27 9.5E-32 227.4 31.8 365 45-419 2-391 (394)
10 PRK10483 tryptophan permease; 100.0 2.1E-26 4.6E-31 220.2 32.9 370 43-423 8-403 (414)
11 PRK09664 tryptophan permease T 100.0 8E-26 1.7E-30 216.0 33.4 367 46-422 9-403 (415)
12 TIGR00837 araaP aromatic amino 100.0 1.8E-26 3.8E-31 225.1 27.3 339 52-399 3-360 (381)
13 PRK15132 tyrosine transporter 100.0 1.1E-25 2.3E-30 216.5 31.5 367 47-423 4-392 (403)
14 PRK13629 threonine/serine tran 99.9 5.7E-21 1.2E-25 182.8 33.3 367 51-424 24-440 (443)
15 TIGR00814 stp serine transport 99.9 3.1E-20 6.7E-25 179.3 28.7 361 49-416 6-396 (397)
16 PRK10655 potE putrescine trans 99.8 5.6E-17 1.2E-21 161.2 34.0 234 43-284 5-245 (438)
17 KOG1287 Amino acid transporter 99.8 3.8E-18 8.3E-23 163.5 23.2 358 38-405 6-393 (479)
18 PRK11021 putative transporter; 99.8 4.8E-16 1E-20 153.1 36.5 341 46-399 1-363 (410)
19 PRK10435 cadB lysine/cadaverin 99.8 1.7E-16 3.7E-21 157.3 33.5 237 42-287 3-246 (435)
20 PRK10644 arginine:agmatin anti 99.8 2.4E-16 5.2E-21 156.9 33.9 239 42-287 6-250 (445)
21 PRK10249 phenylalanine transpo 99.8 4.4E-16 9.6E-21 155.2 35.8 343 41-397 18-394 (458)
22 TIGR00909 2A0306 amino acid tr 99.8 1.1E-16 2.3E-21 158.9 29.9 242 43-285 2-252 (429)
23 PRK15049 L-asparagine permease 99.8 4.7E-16 1E-20 156.3 34.5 346 41-397 25-405 (499)
24 TIGR03810 arg_ornith_anti argi 99.8 4.7E-16 1E-20 155.6 33.3 347 44-399 1-381 (468)
25 TIGR01773 GABAperm gamma-amino 99.8 7.7E-16 1.7E-20 153.6 34.6 235 39-284 7-257 (452)
26 TIGR00905 2A0302 transporter, 99.8 6.1E-16 1.3E-20 155.1 33.2 238 43-285 6-255 (473)
27 TIGR00906 2A0303 cationic amin 99.8 2.8E-16 6E-21 159.5 30.9 353 41-397 25-410 (557)
28 PRK11387 S-methylmethionine tr 99.8 1.7E-15 3.6E-20 151.8 35.0 237 41-288 11-266 (471)
29 PRK11049 D-alanine/D-serine/gl 99.8 2.6E-15 5.6E-20 150.2 35.1 234 41-285 17-268 (469)
30 PRK10746 putative transport pr 99.8 3.6E-15 7.8E-20 148.6 35.6 345 42-398 8-388 (461)
31 TIGR00912 2A0309 spore germina 99.8 7.5E-16 1.6E-20 149.1 28.6 332 45-396 2-352 (359)
32 TIGR00930 2a30 K-Cl cotranspor 99.8 2E-15 4.3E-20 160.2 33.0 240 42-282 74-334 (953)
33 PRK10580 proY putative proline 99.8 1.4E-14 3.1E-19 144.6 37.1 233 40-283 5-254 (457)
34 PRK10836 lysine transporter; P 99.8 1.2E-14 2.6E-19 146.2 36.8 236 41-287 12-264 (489)
35 PRK10238 aromatic amino acid t 99.8 5.3E-15 1.2E-19 147.4 33.8 344 41-398 9-386 (456)
36 TIGR00911 2A0308 L-type amino 99.7 1.8E-15 3.8E-20 152.9 30.0 244 38-287 36-294 (501)
37 TIGR00908 2A0305 ethanolamine 99.7 5E-15 1.1E-19 147.4 31.1 231 41-282 4-245 (442)
38 COG1113 AnsP Gamma-aminobutyra 99.7 2.8E-15 6.2E-20 141.6 26.1 348 38-397 7-388 (462)
39 PRK11357 frlA putative fructos 99.7 1.1E-14 2.4E-19 145.0 29.2 235 41-284 5-251 (445)
40 PF13520 AA_permease_2: Amino 99.7 3.3E-14 7.1E-19 141.1 32.4 237 46-289 1-247 (426)
41 TIGR00913 2A0310 amino acid pe 99.7 9.3E-14 2E-18 139.7 35.8 228 44-282 2-251 (478)
42 PRK10197 gamma-aminobutyrate t 99.7 8.5E-14 1.8E-18 138.4 33.3 329 55-397 3-367 (446)
43 COG0531 PotE Amino acid transp 99.6 2.3E-12 5E-17 129.4 32.2 247 39-289 7-262 (466)
44 TIGR03428 ureacarb_perm permea 99.6 2.5E-11 5.5E-16 121.8 35.1 250 39-288 8-273 (475)
45 PF03845 Spore_permease: Spore 99.5 7.5E-12 1.6E-16 119.1 26.4 283 45-340 1-296 (320)
46 TIGR00907 2A0304 amino acid pe 99.5 4.3E-11 9.4E-16 120.5 33.0 242 39-282 7-271 (482)
47 PRK15238 inner membrane transp 99.5 1.8E-10 3.9E-15 116.3 36.4 239 43-283 6-266 (496)
48 TIGR03813 put_Glu_GABA_T putat 99.5 1.5E-10 3.2E-15 116.4 35.3 238 45-288 2-254 (474)
49 KOG1286 Amino acid transporter 99.5 1.8E-12 4E-17 129.4 18.7 350 40-397 26-422 (554)
50 COG0833 LysP Amino acid transp 99.5 1.9E-10 4.2E-15 111.5 30.1 346 41-397 41-427 (541)
51 TIGR00910 2A0307_GadC glutamat 99.4 1.5E-09 3.3E-14 109.5 32.7 231 43-281 3-247 (507)
52 PF00324 AA_permease: Amino ac 99.2 5.8E-11 1.2E-15 119.5 12.7 231 54-290 5-262 (478)
53 KOG1289 Amino acid transporter 99.1 7.2E-08 1.6E-12 93.8 28.0 250 36-289 40-313 (550)
54 COG3949 Uncharacterized membra 99.0 1.2E-06 2.7E-11 79.9 25.9 216 49-279 6-229 (349)
55 KOG3832 Predicted amino acid t 98.9 3.5E-08 7.5E-13 83.2 13.4 210 49-259 15-303 (319)
56 TIGR00800 ncs1 NCS1 nucleoside 98.9 4.4E-06 9.5E-11 83.1 28.9 338 46-386 14-377 (442)
57 COG1457 CodB Purine-cytosine p 98.8 2.1E-05 4.5E-10 76.3 29.7 256 111-386 85-350 (442)
58 TIGR02119 panF sodium/pantothe 98.7 0.00048 1E-08 69.3 36.4 237 38-286 34-293 (471)
59 COG0591 PutP Na+/proline sympo 98.6 0.00038 8.2E-09 70.1 34.0 150 37-198 31-186 (493)
60 PRK12488 acetate permease; Pro 98.6 0.0008 1.7E-08 68.8 36.1 151 40-202 63-215 (549)
61 TIGR02358 thia_cytX probable h 98.6 0.00012 2.6E-09 71.4 28.8 292 74-386 26-322 (386)
62 PRK11375 allantoin permease; P 98.6 0.00019 4.1E-09 72.0 30.8 302 78-388 62-393 (484)
63 PRK09442 panF sodium/panthothe 98.6 0.0012 2.7E-08 66.6 37.0 237 38-286 35-294 (483)
64 TIGR00813 sss transporter, SSS 98.6 0.00026 5.6E-09 69.9 30.5 147 43-201 2-150 (407)
65 PF00474 SSF: Sodium:solute sy 98.5 0.00023 4.9E-09 70.2 29.1 146 43-200 5-153 (406)
66 PRK11017 codB cytosine permeas 98.4 0.00082 1.8E-08 66.0 29.8 288 74-386 39-331 (404)
67 PRK09395 actP acetate permease 98.4 0.0048 1E-07 63.2 35.3 150 38-199 63-214 (551)
68 TIGR00796 livcs branched-chain 98.3 0.0035 7.5E-08 60.5 31.7 311 53-395 2-347 (378)
69 TIGR02711 symport_actP cation/ 98.3 0.0058 1.3E-07 62.6 35.3 149 41-201 64-214 (549)
70 TIGR03648 Na_symport_lg probab 98.1 0.016 3.4E-07 59.5 35.6 151 38-200 26-178 (552)
71 PF02133 Transp_cyt_pur: Perme 98.1 7E-05 1.5E-09 74.7 13.8 336 46-387 9-367 (440)
72 TIGR02121 Na_Pro_sym sodium/pr 98.0 0.021 4.5E-07 57.7 37.0 150 41-201 33-190 (487)
73 PRK15419 proline:sodium sympor 98.0 0.022 4.8E-07 57.7 35.4 150 40-200 36-193 (502)
74 PRK10484 putative transporter; 98.0 0.026 5.6E-07 57.6 35.1 159 38-201 32-195 (523)
75 PF02554 CstA: Carbon starvati 98.0 0.002 4.3E-08 60.6 20.3 196 45-265 51-247 (376)
76 COG1953 FUI1 Cytosine/uracil/t 97.8 0.041 9E-07 54.0 29.0 282 107-388 103-407 (497)
77 TIGR00835 agcS amino acid carr 97.7 0.055 1.2E-06 52.9 30.2 149 44-204 45-202 (425)
78 COG0733 Na+-dependent transpor 97.6 0.07 1.5E-06 51.8 28.5 233 46-282 9-268 (439)
79 PRK00701 manganese transport p 97.6 0.098 2.1E-06 51.9 31.2 46 106-151 93-138 (439)
80 COG1914 MntH Mn2+ and Fe2+ tra 97.6 0.09 2E-06 51.3 32.4 362 46-424 17-409 (416)
81 COG1966 CstA Carbon starvation 97.4 0.012 2.7E-07 57.9 16.8 105 46-150 52-157 (575)
82 KOG2082 K+/Cl- cotransporter K 97.2 0.1 2.3E-06 53.2 21.7 108 46-154 115-227 (1075)
83 KOG1288 Amino acid transporter 97.2 0.013 2.8E-07 58.9 14.9 56 229-284 294-350 (945)
84 PRK15015 carbon starvation pro 97.0 0.045 9.8E-07 55.4 16.8 104 46-149 83-187 (701)
85 PF00209 SNF: Sodium:neurotran 96.7 0.83 1.8E-05 46.7 27.9 68 46-114 5-78 (523)
86 PF01235 Na_Ala_symp: Sodium:a 96.7 0.71 1.5E-05 45.1 25.6 145 40-197 13-168 (416)
87 COG4147 DhlC Predicted symport 96.0 1.7 3.6E-05 42.7 28.1 212 63-286 61-294 (529)
88 PF01566 Nramp: Natural resist 95.9 1.9 4E-05 41.7 28.9 81 106-197 41-123 (358)
89 KOG2083 Na+/K+ symporter [Inor 95.8 0.025 5.5E-07 56.2 6.9 204 65-280 51-275 (643)
90 PHA02764 hypothetical protein; 95.7 1.7 3.8E-05 40.3 21.7 90 43-133 11-103 (399)
91 KOG2349 Na+:iodide/myo-inosito 94.9 0.39 8.5E-06 48.6 12.0 233 42-287 43-298 (585)
92 TIGR00796 livcs branched-chain 94.0 0.84 1.8E-05 44.3 11.8 51 104-154 252-302 (378)
93 COG1115 AlsT Na+/alanine sympo 93.8 7.2 0.00016 38.2 28.3 319 41-378 58-420 (452)
94 PF05525 Branch_AA_trans: Bran 93.7 0.6 1.3E-05 45.8 10.3 80 105-195 259-338 (427)
95 COG1114 BrnQ Branched-chain am 91.2 3 6.5E-05 40.3 11.2 80 105-195 261-340 (431)
96 KOG3660 Sodium-neurotransmitte 89.5 29 0.00063 36.1 20.9 116 176-291 224-353 (629)
97 PF05525 Branch_AA_trans: Bran 87.8 30 0.00065 34.2 25.8 314 48-395 5-353 (427)
98 PRK15433 branched-chain amino 87.0 4.9 0.00011 39.6 9.6 75 109-195 267-341 (439)
99 PRK15433 branched-chain amino 84.3 46 0.00099 33.0 27.4 149 231-395 196-356 (439)
100 COG4145 PanF Na+/panthothenate 83.2 45 0.00097 32.1 29.5 110 43-153 38-153 (473)
101 cd08762 Cyt_b561_CYBASC3 Verte 81.6 33 0.00071 29.3 11.1 117 205-327 13-133 (179)
102 KOG2466 Uridine permease/thiam 79.9 69 0.0015 32.0 17.6 288 42-339 52-378 (572)
103 KOG1289 Amino acid transporter 78.4 48 0.001 33.6 12.6 51 106-156 324-374 (550)
104 COG0814 SdaC Amino acid permea 75.3 89 0.0019 30.9 16.1 142 257-398 218-376 (415)
105 KOG3659 Sodium-neurotransmitte 74.6 1.1E+02 0.0023 31.5 25.1 72 46-118 82-159 (629)
106 PF02028 BCCT: BCCT family tra 70.2 1.3E+02 0.0028 30.5 28.8 21 46-66 75-95 (485)
107 TIGR01197 nramp NRAMP (natural 66.2 1.4E+02 0.003 29.3 31.7 93 55-152 13-109 (390)
108 PLN02680 carbon-monoxide oxyge 66.0 1E+02 0.0022 27.7 12.3 116 207-328 25-143 (232)
109 PRK09928 choline transport pro 61.7 2.2E+02 0.0047 30.1 25.2 21 46-66 93-113 (679)
110 CHL00182 tatC Sec-independent 52.0 1.9E+02 0.0041 26.3 12.2 38 302-339 75-112 (249)
111 cd08765 Cyt_b561_CYBRD1 Verteb 50.4 1.5E+02 0.0032 24.7 8.5 106 218-328 4-111 (153)
112 TIGR03750 conj_TIGR03750 conju 49.3 1.3E+02 0.0027 23.6 7.5 71 37-107 9-81 (111)
113 TIGR00909 2A0306 amino acid tr 48.2 2.8E+02 0.0061 27.2 13.0 48 107-154 264-311 (429)
114 COG0534 NorM Na+-driven multid 44.9 3.3E+02 0.0072 27.2 13.2 30 256-285 311-340 (455)
115 PLN02810 carbon-monoxide oxyge 44.0 2.4E+02 0.0052 25.3 11.7 109 214-328 33-143 (231)
116 PRK13183 psbN photosystem II r 42.6 26 0.00056 22.3 2.2 29 263-291 6-34 (46)
117 PF02468 PsbN: Photosystem II 39.8 28 0.00061 21.9 2.0 27 265-291 5-31 (43)
118 PF11239 DUF3040: Protein of u 39.7 98 0.0021 22.6 5.4 17 8-24 3-19 (82)
119 KOG4812 Golgi-associated prote 38.8 57 0.0012 29.1 4.5 73 351-427 159-245 (262)
120 CHL00020 psbN photosystem II p 38.5 25 0.00055 22.0 1.7 28 264-291 4-31 (43)
121 PF03169 OPT: OPT oligopeptide 38.2 1.8E+02 0.0038 30.6 9.0 68 48-119 357-427 (624)
122 COG4709 Predicted membrane pro 35.5 2.9E+02 0.0063 23.8 8.8 52 46-101 76-129 (195)
123 TIGR01912 TatC-Arch Twin argin 33.4 3.6E+02 0.0078 24.3 12.2 38 302-339 62-99 (237)
124 KOG1287 Amino acid transporter 31.9 4.6E+02 0.0099 26.5 10.1 45 109-154 275-319 (479)
125 PLN02351 cytochromes b561 fami 31.0 4E+02 0.0087 24.1 11.4 73 252-328 73-146 (242)
126 PRK10921 twin-arginine protein 30.9 4.2E+02 0.0091 24.2 12.0 37 303-339 66-102 (258)
127 TIGR00906 2A0303 cationic amin 30.7 6.2E+02 0.013 26.1 15.6 45 108-152 300-344 (557)
128 PF11085 YqhR: Conserved membr 29.7 3.2E+02 0.0068 23.2 7.2 46 58-103 47-95 (173)
129 PRK09950 putative transporter; 29.6 6.2E+02 0.013 25.8 27.9 22 45-66 83-104 (506)
130 PF00902 TatC: Sec-independent 29.5 3.9E+02 0.0085 23.5 12.1 95 302-396 58-174 (215)
131 PHA02680 ORF090 IMV phosphoryl 29.3 1.5E+02 0.0033 21.8 4.6 58 234-293 16-74 (91)
132 PF10716 NdhL: NADH dehydrogen 29.2 2.3E+02 0.0049 20.6 6.7 47 367-414 13-61 (81)
133 PF05915 DUF872: Eukaryotic pr 29.0 1.9E+02 0.004 22.8 5.6 25 47-71 40-64 (115)
134 KOG2174 Leptin receptor gene-r 27.0 1.8E+02 0.0038 23.2 5.0 52 48-99 65-119 (131)
135 KOG1619 Cytochrome b [Energy p 26.7 4.8E+02 0.01 23.5 10.4 110 213-328 41-152 (245)
136 PRK01766 multidrug efflux prot 26.5 6.4E+02 0.014 24.9 10.8 28 256-283 309-336 (456)
137 PF04835 Pox_A9: A9 protein co 26.4 1.8E+02 0.0038 19.3 4.1 34 258-292 19-52 (54)
138 PF12666 PrgI: PrgI family pro 25.6 1.9E+02 0.0042 21.4 5.1 32 39-70 10-41 (93)
139 KOG1277 Endosomal membrane pro 24.9 7.1E+02 0.015 24.9 14.3 11 54-64 293-303 (593)
140 PHA03048 IMV membrane protein; 23.4 2.6E+02 0.0055 20.8 4.9 61 232-294 14-74 (93)
141 COG4858 Uncharacterized membra 23.3 4.9E+02 0.011 22.5 9.2 34 71-104 118-152 (226)
142 PF05805 L6_membrane: L6 membr 23.2 1.7E+02 0.0037 25.4 4.8 62 371-432 46-117 (195)
143 PF04133 Vps55: Vacuolar prote 22.6 4E+02 0.0086 21.2 7.3 44 53-96 64-109 (120)
144 COG5264 VTC1 Vacuolar transpor 22.3 3.4E+02 0.0075 21.5 5.8 50 46-100 36-86 (126)
145 PF07954 DUF1689: Protein of u 22.3 3.4E+02 0.0074 22.6 6.2 57 375-431 35-92 (152)
146 PRK00187 multidrug efflux prot 21.9 8E+02 0.017 24.4 10.3 29 256-284 306-334 (464)
147 PF03348 Serinc: Serine incorp 21.7 8.1E+02 0.017 24.4 10.0 32 347-378 111-144 (429)
148 PLN00151 potassium transporter 21.5 1.1E+03 0.023 25.8 17.8 142 230-376 345-500 (852)
149 PF07695 7TMR-DISM_7TM: 7TM di 20.9 5.1E+02 0.011 21.8 14.0 84 333-418 85-168 (205)
150 COG5336 Uncharacterized protei 20.5 2.8E+02 0.006 21.6 4.8 35 54-88 52-86 (116)
No 1
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-57 Score=427.54 Aligned_cols=382 Identities=23% Similarity=0.377 Sum_probs=338.7
Q ss_pred CCCCchHHHHHHHHHhhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhh-----CCCCCCHHHHHHHh
Q 013919 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFES-----KEGITTYPDIGEAA 116 (434)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~-----~~~~~~y~~l~~~~ 116 (434)
++.+|..++..|+.++++|+|+|++|+||+++|++ |.+..++.+.++.|+++.+++|.+. .....+|.+.++.+
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a 123 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA 123 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 45599999999999999999999999999999999 9999999999999999999998742 12235676666555
Q ss_pred ----------cccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhcccc
Q 013919 117 ----------FGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRD 186 (434)
Q Consensus 117 ----------~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~ 186 (434)
+|+++|.++++.+++.++|.|++|+++.+++++++.+.... ...+.+.++.+.....++++++|+
T Consensus 124 ~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~-----~~~s~~~~i~~~~~~~lll~~Ir~ 198 (449)
T KOG1304|consen 124 MEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSP-----GVLSVRLYILIQLPPLLLLNLIRN 198 (449)
T ss_pred HcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCC-----CCccHHHHHHHHHHHHHHHHHHHh
Confidence 57889999999999999999999999999999999983221 122466778888899999999999
Q ss_pred CchhhHhhHHHHHHHHHHHHhhhhcccccccccCCCCccccccchhhHHHHHHHhccCccchhhHHhhccchhhhH---H
Q 013919 187 LRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFT---K 263 (434)
Q Consensus 187 ~~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~---~ 263 (434)
+|.++.+|.++.+..+....++.++...+.++.++.+...+++++...+|+.+|||+|+.++.|++++||+|++++ +
T Consensus 199 Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F~g~~g 278 (449)
T KOG1304|consen 199 LKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKFPGPFG 278 (449)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhhcCCccc
Confidence 9999999999999887776666666666655555566667789999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhcCCchhhhhhcCCCchhHHHHHHHHHHHHHhhhhcchhcchHHHHHhhcCCC--CC
Q 013919 264 ALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAG--IS 341 (434)
Q Consensus 264 ~~~~s~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~v~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~--~~ 341 (434)
++..++.++.++|..+|++||++||+++++.+++|+|+ ++.....++++++.++++||+|++|..+.+++.++++ +.
T Consensus 279 VLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~ 357 (449)
T KOG1304|consen 279 VLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSEN 357 (449)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCcc
Confidence 99999999999999999999999999999999999999 6877788999999999999999999999999977655 33
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHHHHHHhhHHHHHHHhcccc---chhhHhhhHHHHHHHHHH
Q 013919 342 NNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILGRKA---TRTQIVSSTAIAVLGVIC 418 (434)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~l~G~~~~~~~~~ilP~l~~l~~~~~~~---~~~~~~~~~~~~~~g~~~ 418 (434)
++++.....|..++.++..+|..+||++.+++++|+++++.+.+++|+++|+..++++. ..|+.+.+..++++|++.
T Consensus 358 ~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~ 437 (449)
T KOG1304|consen 358 RKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFG 437 (449)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999976543 468889999999999999
Q ss_pred HHHHHHHHHHHH
Q 013919 419 AILGTFSSVAKI 430 (434)
Q Consensus 419 ~v~g~~~si~~i 430 (434)
++.|||+++.++
T Consensus 438 ~v~Gty~si~~i 449 (449)
T KOG1304|consen 438 FVYGTYTSIKEI 449 (449)
T ss_pred HHHHHhhhhhcC
Confidence 999999998764
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=2.4e-56 Score=441.84 Aligned_cols=386 Identities=18% Similarity=0.343 Sum_probs=320.4
Q ss_pred CCchHHHHHHHHHhhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcccchhh
Q 013919 45 GCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRL 123 (434)
Q Consensus 45 ~~s~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~ 123 (434)
+.|..++++|++|+++|+|+|++|++++++||+ |++++++++.++.|+.+++.++++ .++.++|+|++++++||++++
T Consensus 59 ~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~-~~~~~sY~~la~~~~G~~g~~ 137 (467)
T PTZ00206 59 PGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAAD-KTNIRTYEGVARVLLGPWGSY 137 (467)
T ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCCCHHHHHHHHhCHHHHH
Confidence 478899999999999999999999999999999 999999999999999999999977 467789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCC-CCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHHHHHH
Q 013919 124 LISVLLYTELYSYCVEFIILEGDNLTSLFPGASLD-WPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATI 202 (434)
Q Consensus 124 ~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~ 202 (434)
++++.+.+.++|.|++|+++.+|.++.+++....+ +.+.....+..+.++..++++|++++|+++.++++|.+++.+++
T Consensus 138 ~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i~ 217 (467)
T PTZ00206 138 YVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFMV 217 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988754321 10001112233344566788999999999999999999998777
Q ss_pred HHHHhhhhccccccccc--C-------C--CCcccc-ccchhhHHHHHHHhccCccchhhHHhhccch--hhhHHHHHHH
Q 013919 203 LIVLCVLFLGTIEGIGF--H-------P--TGQVVK-WSGMPFAIGIYGFCYSGHSVFPNIYQSMADK--TKFTKALITC 268 (434)
Q Consensus 203 ~~~~~~~~~~~~~~~~~--~-------~--~~~~~~-~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p--~~~~~~~~~s 268 (434)
+..+.+++....++.+. + + +...++ ..+.+.++++++|||.||.+++++++||||| +|+.+++..+
T Consensus 218 ~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~~s 297 (467)
T PTZ00206 218 YLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLASTIA 297 (467)
T ss_pred HHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHHHHH
Confidence 66655554433222111 0 0 001112 2357789999999999999999999999985 5899999999
Q ss_pred HHHHHHHHHHHHhHHHHhhcCCchhhhhhcC-CCchhHHHHHHHHHHHHHhhhhcchhcchHHHHHhhcCCC-CCChhHH
Q 013919 269 FALCVLIYGGVAVMGFLMFGQGTLSQITLNM-PPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAG-ISNNYWC 346 (434)
Q Consensus 269 ~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~-~~~~~~~~v~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~-~~~~~~~ 346 (434)
+.+++++|.++|++||+.||++++++++.|+ |.++....++++...++++++||++.+|+|+.+++.+..+ ++...++
T Consensus 298 ~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~~~~~~~~~ 377 (467)
T PTZ00206 298 MGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWDARKVAFWK 377 (467)
T ss_pred HHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCCcccCchhh
Confidence 9999999999999999999999999999999 5667777788888889999999999999999999887433 2334456
Q ss_pred HHHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHHHHHHhhHHHHHHH---hccccchhhHhhhHHHHHHHHHHHHHHH
Q 013919 347 FILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKI---LGRKATRTQIVSSTAIAVLGVICAILGT 423 (434)
Q Consensus 347 ~~~~~~~~~~~~~~la~~~p~~~~~~~l~G~~~~~~~~~ilP~l~~l~~---~~~~~~~~~~~~~~~~~~~g~~~~v~g~ 423 (434)
+...+..+...+.++|+.+|+++.+++++||++++.++|++|+++|++. ++++..+++++.++.++++|++.++.||
T Consensus 378 ~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt 457 (467)
T PTZ00206 378 HCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGT 457 (467)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEecc
Confidence 6666666777889999999999999999999999999999999999984 2233344556789999999999999999
Q ss_pred HHHHHHHH
Q 013919 424 FSSVAKIA 431 (434)
Q Consensus 424 ~~si~~ii 431 (434)
|+++.+.+
T Consensus 458 ~~si~~~~ 465 (467)
T PTZ00206 458 GATIWGVT 465 (467)
T ss_pred hhHhhHHh
Confidence 99998875
No 3
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=4.5e-53 Score=406.44 Aligned_cols=389 Identities=35% Similarity=0.631 Sum_probs=345.1
Q ss_pred CCCCCchHHHHHHHHHhhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCC-----HHHHHHH
Q 013919 42 IAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITT-----YPDIGEA 115 (434)
Q Consensus 42 ~~~~~s~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-----y~~l~~~ 115 (434)
.+++.|++++.++.++.++|.|+|++|+|+++.||. |++.+++.++++.||+.++.+|.+.++...+ |.|++++
T Consensus 34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~~ 113 (437)
T KOG1303|consen 34 PSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQA 113 (437)
T ss_pred cCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHHH
Confidence 356699999999999999999999999999999999 8999999999999999999999987776665 9999999
Q ss_pred hcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhH
Q 013919 116 AFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSA 195 (434)
Q Consensus 116 ~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~ 195 (434)
+||+++++++.+.+...+++.++.|++..+|+++.+++....+.. ..+ .+.+.++++++.+|++++||++.++++|.
T Consensus 114 afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~--~l~-~~~f~iif~~i~~~~s~lp~~~~l~~~S~ 190 (437)
T KOG1303|consen 114 AFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN--SLD-KQYFIIIFGLIVLPLSQLPNFHSLSYLSL 190 (437)
T ss_pred HhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--ccc-ceehhhhHHHHHHHHHHCCCcchhHHHHH
Confidence 999999999999999999999999999999999999887654321 333 56788889999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcccccccccC-CCCccccc--cch-hhHHHHHHHhccCccchhhHHhhccchhhhHHHHHHHHHH
Q 013919 196 TGVVATILIVLCVLFLGTIEGIGFH-PTGQVVKW--SGM-PFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFAL 271 (434)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~-~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~s~~~ 271 (434)
.+.+..+....+.++.+..++.+.+ +.....+. ... ++++|++.|+|.||..+|+++.+||+|++++|++..++.+
T Consensus 191 ~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~~~lis~~~ 270 (437)
T KOG1303|consen 191 VGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPKFKKALLISYII 270 (437)
T ss_pred HHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchhhhhHHHHHHHH
Confidence 9998888777777777766665442 21222222 222 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHhhcCCchhhhhhcCCCchhHHHHHHHHHHHHHhhhhcchhcchHHHHHhhcCCCCC----ChhHHH
Q 013919 272 CVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGIS----NNYWCF 347 (434)
Q Consensus 272 ~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~v~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~~----~~~~~~ 347 (434)
++.+|+.+++.||++|||+++|+++.|+++..+....+++++.++++.++.....|..+.+|++.....+ +....|
T Consensus 271 ~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~~~~~~~~~R 350 (437)
T KOG1303|consen 271 VTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPDFKKRSLVLR 350 (437)
T ss_pred HHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCcccccccccee
Confidence 9999999999999999999999999999755677778889999999999999999999999998865533 356689
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHHHHHHhhHHHHHHHhccccchhhHhhhHHH-HHHHHHHHHHHHHHH
Q 013919 348 ILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILGRKATRTQIVSSTAI-AVLGVICAILGTFSS 426 (434)
Q Consensus 348 ~~~~~~~~~~~~~la~~~p~~~~~~~l~G~~~~~~~~~ilP~l~~l~~~~~~~~~~~~~~~~~~-~~~g~~~~v~g~~~s 426 (434)
.+.|..+++.+.++|+.+|+|+.+++++|+....++++++|+++|+..+|.++...+++.++.+ +++|++.++....++
T Consensus 351 ~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~ 430 (437)
T KOG1303|consen 351 LLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGG 430 (437)
T ss_pred eehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998888777788888888 799999999999999
Q ss_pred HHHHHhh
Q 013919 427 VAKIAEN 433 (434)
Q Consensus 427 i~~ii~~ 433 (434)
++.++.+
T Consensus 431 ~~~li~~ 437 (437)
T KOG1303|consen 431 VRSLIID 437 (437)
T ss_pred HHHHhhC
Confidence 9888753
No 4
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=8.3e-49 Score=386.08 Aligned_cols=381 Identities=17% Similarity=0.219 Sum_probs=310.9
Q ss_pred CCCCCchHHHHHHHHHhhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhh----hCCC-C-------CC
Q 013919 42 IAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFE----SKEG-I-------TT 108 (434)
Q Consensus 42 ~~~~~s~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~----~~~~-~-------~~ 108 (434)
.+++.+..++.+++.++.+|.|+|+||++++++||+ |++.+++.++++.|+++++.++.. +++. . .+
T Consensus 42 ~~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~ 121 (473)
T PLN03074 42 LWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQ 121 (473)
T ss_pred ccCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHH
Confidence 366799999999999999999999999999999999 999999999999999999987642 2221 1 26
Q ss_pred HHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCc
Q 013919 109 YPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLR 188 (434)
Q Consensus 109 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~ 188 (434)
|.|+++..+||+++.+..+...+++++.|+.|.+..++.+..+-... +.+.+.++...+..|++++|+++
T Consensus 122 ~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~~----------~~~~~~~i~~~v~~~~~~i~sl~ 191 (473)
T PLN03074 122 WFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDNL----------DKRTWTYIFGACCATTVFIPSFH 191 (473)
T ss_pred HHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCCc----------CCCeEEeehHHHHHHHHHccCHH
Confidence 78999999999999999999999999999999998888877663221 23345556777888888999999
Q ss_pred hhhHhhHHHHHHHHHHHHhhhhcccccc--cccCCCCccccccchhhHHHHHHHhccCccchhhHHhhccchhhhHHHHH
Q 013919 189 VISYLSATGVVATILIVLCVLFLGTIEG--IGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALI 266 (434)
Q Consensus 189 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~ 266 (434)
.++++|.+|+.+++.....++......+ ++.+.. ...++..++.++++++|+|+||..+|++++|||||+|++++..
T Consensus 192 ~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~-~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~F~~~~~ 270 (473)
T PLN03074 192 NYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHS-GPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYL 270 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-CchhHHHHHHHHHHHHHHhcccccHHHHHHhccChhcccchHH
Confidence 9999999998865543332222221111 112111 1234556777888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHhhcCCchh--hhhhcCCCchhHHHHHHHHHHHHHhhhhcchhcchHHHHHhhcCCCCCChh
Q 013919 267 TCFALCVLIYGGVAVMGFLMFGQGTLS--QITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNY 344 (434)
Q Consensus 267 ~s~~~~~~~Y~~~g~~gy~~fg~~~~~--~il~~~~~~~~~~~v~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~~~~~ 344 (434)
.+...++.+|+.+|+.||++|||++.+ +.+.|+|++.+ ..+++++++++++.+||+++.|+.+..|+..+.+..++.
T Consensus 271 l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~~-~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~~~k~~ 349 (473)
T PLN03074 271 AATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSGW-RDAAVILMLIHQFITFGFACTPLYFVWEKAIGVHDTKSI 349 (473)
T ss_pred HHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCchH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccccccH
Confidence 999999999999999999999998764 45667886654 567888899999999999999999999988765544566
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHHHHHHhhHHHHHHHhccc-------------cchh--hHhhhH
Q 013919 345 WCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILGRK-------------ATRT--QIVSST 409 (434)
Q Consensus 345 ~~~~~~~~~~~~~~~~la~~~p~~~~~~~l~G~~~~~~~~~ilP~l~~l~~~~~~-------------~~~~--~~~~~~ 409 (434)
..|...|+.+++.++++|..+|+|+.+++++||++++.++|++|+++|++.++++ ..+| ..+.++
T Consensus 350 ~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 429 (473)
T PLN03074 350 CLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNA 429 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhh
Confidence 7889999999999999999999999999999999999999999999999865432 1122 357898
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHhhC
Q 013919 410 AIAVL-GVICAILGTFSSVAKIAENY 434 (434)
Q Consensus 410 ~~~~~-g~~~~v~g~~~si~~ii~~~ 434 (434)
.++++ |++..+.|+|+|+.+++++|
T Consensus 430 ~iiv~~~~~g~~~G~~asi~~ii~~~ 455 (473)
T PLN03074 430 FVVVWVLVVGFGFGGWASMTNFVRQI 455 (473)
T ss_pred HHHHhhhhHhhccchHHHHHHHHHhh
Confidence 98886 44447899999999999875
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=9.5e-53 Score=414.72 Aligned_cols=380 Identities=31% Similarity=0.563 Sum_probs=329.4
Q ss_pred CCCchHHHHHHHHHhhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhh---CCCCCCHHHHHHHhccc
Q 013919 44 HGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFES---KEGITTYPDIGEAAFGK 119 (434)
Q Consensus 44 ~~~s~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~---~~~~~~y~~l~~~~~G~ 119 (434)
||+|+++++++++|+++|+|+|++|++++++||+ |.+++++++.++.|+.+++.++.++ +++..+|+|++++.+||
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~ 80 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP 80 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 5689999999999999999999999999999999 9999999999999999999999875 35889999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHHH
Q 013919 120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (434)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~ 199 (434)
++++++++++.+.++|.+++|++..+|.+.++++....+ ...++..+.++..++++|++++|+++.+++.|.++.+
T Consensus 81 ~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~----~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~ 156 (409)
T PF01490_consen 81 KGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD----LFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLF 156 (409)
T ss_pred cccccccchheeccccccceeEEEeeeeeeccccccccc----ccccccccccccccccccccccchhhHHHHHhhhhhh
Confidence 999999999999999999999999999999998875322 1224556667788999999999999999999999988
Q ss_pred HHHHHHHhhhhcccc--cc--cccCCC--CccccccchhhHHHHHHHhccCccchhhHHhhccchhhhH---HHHHHHHH
Q 013919 200 ATILIVLCVLFLGTI--EG--IGFHPT--GQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFT---KALITCFA 270 (434)
Q Consensus 200 ~~~~~~~~~~~~~~~--~~--~~~~~~--~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~---~~~~~s~~ 270 (434)
+.+.......+.... .. .+.+.. .+..++.+++.++++++|||.||.+++++++|||+|+|++ ++...++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~ 236 (409)
T PF01490_consen 157 SIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMI 236 (409)
T ss_pred ccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhh
Confidence 776532222221111 11 111111 1234567899999999999999999999999999999877 99999999
Q ss_pred HHHHHHHHHHhHHHHhhcCCchhhhhhcCCCchhHHHHHHHHHHHHHhhhhcchhcchHHHHHhhcCC----------CC
Q 013919 271 LCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPA----------GI 340 (434)
Q Consensus 271 ~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~v~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~----------~~ 340 (434)
+++++|..+|+.||++||+++++|++.|++++++...++++++.++++.+||++.+|.++.+++.+.+ ++
T Consensus 237 ~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~ 316 (409)
T PF01490_consen 237 ICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPKNT 316 (409)
T ss_pred hhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheeccccccccccccc
Confidence 99999999999999999999999999999999888889999999999999999999999999998864 23
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHHHHHHhhHHHHHHHhccccchhhH-----hhhHHHHHHH
Q 013919 341 SNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILGRKATRTQI-----VSSTAIAVLG 415 (434)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~l~G~~~~~~~~~ilP~l~~l~~~~~~~~~~~~-----~~~~~~~~~g 415 (434)
+.++++|...|+.+++.++++|..+|+++.+++++|++++..++|++|+++|++.+++++.+.++ ...+.++++|
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 396 (409)
T PF01490_consen 317 PSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFG 396 (409)
T ss_pred cccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEe
Confidence 34567789999999999999999999999999999999999999999999999998776543332 4578999999
Q ss_pred HHHHHHHHHHHH
Q 013919 416 VICAILGTFSSV 427 (434)
Q Consensus 416 ~~~~v~g~~~si 427 (434)
++.++.|+|+++
T Consensus 397 ~~~~~~~~~~~i 408 (409)
T PF01490_consen 397 VVLMVFGTYQSI 408 (409)
T ss_pred eehhHHhHHHHc
Confidence 999999999876
No 6
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-46 Score=334.83 Aligned_cols=385 Identities=23% Similarity=0.384 Sum_probs=338.5
Q ss_pred ccCCCCCchHHHHHHHHHhhhccccchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCC--------CCCHHH
Q 013919 40 LPIAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEG--------ITTYPD 111 (434)
Q Consensus 40 ~~~~~~~s~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~--------~~~y~~ 111 (434)
.+.+.+++.+|+..|..|++-|.=+++||+|+...||.++.+++..+.+++|++.++.+|.. .++ .++|-+
T Consensus 111 Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw~i~amvg~A~vCcyTGk~Li~CLY-E~~~dGevVrvRdsYva 189 (524)
T KOG4303|consen 111 GEASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYWSIGAMVGVAYVCCYTGKLLIECLY-ENGEDGEVVRVRDSYVA 189 (524)
T ss_pred CCCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchhHHHHHHhhhhhhhccchhhhhhhc-cCCCCCcEEEeehhHHH
Confidence 34456799999999999999999999999999999999999999999999999999999964 333 369999
Q ss_pred HHHHhcccc-hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchh
Q 013919 112 IGEAAFGKY-GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVI 190 (434)
Q Consensus 112 l~~~~~G~~-~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l 190 (434)
++..++++. |+..+.+.+.+.....|+.|.++.+|.++..++..+.+ +..|.+++...++|+.++++++..
T Consensus 190 IA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd--------~~sWm~i~~a~LLpc~FLk~Lk~V 261 (524)
T KOG4303|consen 190 IADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVD--------KASWMMITSASLLPCSFLKDLKIV 261 (524)
T ss_pred HHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCcc--------ccchhhhhhHHHhhhHHHHHHHHH
Confidence 999988874 66889999999999999999999999999999876532 345778899999999999999999
Q ss_pred hHhhHHHHHHHHHHHHhhhhcc--cccccccCCCCccccccchhhHHHHHHHhccCccchhhHHhhccchhhhHHHHHHH
Q 013919 191 SYLSATGVVATILIVLCVLFLG--TIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITC 268 (434)
Q Consensus 191 ~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~s 268 (434)
+.+|.++.++.+.+-++++.+. ...++.|+.-....+...++..+|++.|+|..|..+|.+...|+||+++...+.++
T Consensus 262 S~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~Fn~Ml~Ws 341 (524)
T KOG4303|consen 262 SRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQFNVMLKWS 341 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhHheeeeehH
Confidence 9999998888776655555443 45666776555567788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHhhcCCchhhhhhcCCCchhHHHHHHHHHHHHHhhhhcchhcchHHHHHhhcCCC---------
Q 013919 269 FALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAG--------- 339 (434)
Q Consensus 269 ~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~v~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~--------- 339 (434)
.+...++-..+|..+|++||+.++..+++|+|+... ..+.+++.++..+.|||+-++.+.+.+|+-+...
T Consensus 342 HIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~qsf-k~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpsc 420 (524)
T KOG4303|consen 342 HIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQSF-KILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSC 420 (524)
T ss_pred HHHHHHHHHHHHHheeeeechhhHHHHhcCCCccch-hhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCcee
Confidence 999999999999999999999999999999997644 4466788889999999999999999999876322
Q ss_pred ---CCChhHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHHHHHHhhHHHHHHHhccccchhhHhhhHHHHHHHH
Q 013919 340 ---ISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILGRKATRTQIVSSTAIAVLGV 416 (434)
Q Consensus 340 ---~~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~l~G~~~~~~~~~ilP~l~~l~~~~~~~~~~~~~~~~~~~~~g~ 416 (434)
+.+-+-+.+..|.+++.++.+.|+.+|+|..+++++|++.++.++|+.|+++|+++++++....++..+..++++|.
T Consensus 421 ys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~ 500 (524)
T KOG4303|consen 421 YSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGC 500 (524)
T ss_pred eCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhhheeEEEEee
Confidence 22233445667999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred HHHHHHHHHHHHHHHhhC
Q 013919 417 ICAILGTFSSVAKIAENY 434 (434)
Q Consensus 417 ~~~v~g~~~si~~ii~~~ 434 (434)
.+++.|.|.|..+++++|
T Consensus 501 ~~~vsG~y~S~~~Li~A~ 518 (524)
T KOG4303|consen 501 SVCVSGVYFSSMELIRAI 518 (524)
T ss_pred eEEEEeEehhhHHHHHHH
Confidence 999999999999999875
No 7
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-43 Score=338.71 Aligned_cols=386 Identities=22% Similarity=0.377 Sum_probs=324.6
Q ss_pred CCCchHHHHHHHHHhhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcccchh
Q 013919 44 HGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGR 122 (434)
Q Consensus 44 ~~~s~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~ 122 (434)
++.|.+.+++++.|+++|+|++++|++|++.|.+ |++++.+++.++.++.+++.+++++ .+.++|+++++..+|+.++
T Consensus 4 ~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~-~~~~ty~~l~~~~~g~~g~ 82 (411)
T KOG1305|consen 4 GKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKK-SGERTYSSLGDLIFGKLGK 82 (411)
T ss_pred CccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhh-cCCCCHHHHHHHHcCCCce
Confidence 4578999999999999999999999999999998 9999999999999999999999884 4446999999999999996
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCC-CCCCc-ccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHHHH
Q 013919 123 LLISVLLYTELYSYCVEFIILEGDNLTSLFPGASL-DWPGF-QLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVA 200 (434)
Q Consensus 123 ~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~ 200 (434)
....+.......| +++|++..+|.+..+...... ++.+. +.+++..+.+....+++|+++.|+++++++.|.++..+
T Consensus 83 ~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~~s~~~ 161 (411)
T KOG1305|consen 83 VDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSALSLAS 161 (411)
T ss_pred eeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 6666665555555 699999999999865544321 11111 22333346778889999999999999999999999999
Q ss_pred HHHHHHhhhhccccccc---ccC-CCCccccccchhhHHHHHHHhccCccchhhHHhhccchh--hhHHHHHHHHHHHHH
Q 013919 201 TILIVLCVLFLGTIEGI---GFH-PTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT--KFTKALITCFALCVL 274 (434)
Q Consensus 201 ~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~--~~~~~~~~s~~~~~~ 274 (434)
.+...+.+++....... ... ..++...+++.+.+++++.|+|.||.+..++++|||||+ |+.++...+...+.+
T Consensus 162 ~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~~~~~~~ 241 (411)
T KOG1305|consen 162 VVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIAIILATL 241 (411)
T ss_pred HHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHHHHHHHHH
Confidence 88877777776655322 111 122222336899999999999999999999999999997 699999999999999
Q ss_pred HHHHHHhHHHHhhcCCchhhhhhcCCCchhH------HHHHHHHHHHHHhhhhcchhcchHHHHHhhcCCCC----CChh
Q 013919 275 IYGGVAVMGFLMFGQGTLSQITLNMPPHAFA------SKVAVWTTVINPFTKYALLMNPLARSIEELLPAGI----SNNY 344 (434)
Q Consensus 275 ~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~------~~v~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~----~~~~ 344 (434)
+|..+|.+||+.|||++.+|++.++++.+.. ....+....+..+.++|++.+|+|..+++.+.+.. +...
T Consensus 242 iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~~~~s~ 321 (411)
T KOG1305|consen 242 IYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGLTSFSG 321 (411)
T ss_pred HHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCCCCccc
Confidence 9999999999999999999999999876533 45778888899999999999999999888764442 2556
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHHHHHHhhHHHHHHHhccccchhhHhhhHHHHHHHHHHHHHHHH
Q 013919 345 WCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILGRKATRTQIVSSTAIAVLGVICAILGTF 424 (434)
Q Consensus 345 ~~~~~~~~~~~~~~~~la~~~p~~~~~~~l~G~~~~~~~~~ilP~l~~l~~~~~~~~~~~~~~~~~~~~~g~~~~v~g~~ 424 (434)
.++.+.+..++....+.|++.|+++.+..++||+++..++|++|+++|++..|+ +.+++...++...+++...+.|+.
T Consensus 322 ~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~ 399 (411)
T KOG1305|consen 322 KRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK--KSREPLGALIFLILGVLLSIIGVA 399 (411)
T ss_pred eehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--ccccchHHHHHHHHHHHHHHHHHH
Confidence 777889999999999999999999999999999999999999999999998766 566778899999999999999999
Q ss_pred HHHHHHHhh
Q 013919 425 SSVAKIAEN 433 (434)
Q Consensus 425 ~si~~ii~~ 433 (434)
..+.++..+
T Consensus 400 ~~i~~~~~~ 408 (411)
T KOG1305|consen 400 VMIYDLLAK 408 (411)
T ss_pred HHHHHHHhc
Confidence 999887653
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-32 Score=265.93 Aligned_cols=380 Identities=17% Similarity=0.194 Sum_probs=284.4
Q ss_pred CCCCchHHHHHHHHHhhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCC-CCHHHHHHHhcccc
Q 013919 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGI-TTYPDIGEAAFGKY 120 (434)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~-~~y~~l~~~~~G~~ 120 (434)
+++.+..+++.++.+++||+|+|++|++++..|+. +++++++.+.++.++++++.|+..+.++. .++.+++++.+||+
T Consensus 6 ~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G~~ 85 (415)
T COG0814 6 KKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGKK 85 (415)
T ss_pred cCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhCcc
Confidence 34578899999999999999999999999999999 99999999999999999999999977776 49999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHHHH
Q 013919 121 GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVA 200 (434)
Q Consensus 121 ~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~ 200 (434)
++++.++.+.+.+++.+.+|.+..++.+++.+++... .+...+....++.+.++.+++..++...++..+.+....
T Consensus 86 ~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~----~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~ 161 (415)
T COG0814 86 GGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFG----LNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGK 161 (415)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcc----cCCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999886321 110234556666777777799999999999999988776
Q ss_pred HHHHHHhhhhccccccccc-CCC-Cc-cccccchhhHHHHHHHhccCccchhhHHhhccchh-h-hHHHHHHHHHHHHHH
Q 013919 201 TILIVLCVLFLGTIEGIGF-HPT-GQ-VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-K-FTKALITCFALCVLI 275 (434)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~-~~~-~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~-~~~~~~~s~~~~~~~ 275 (434)
++...+...+.....+... ... .. ..++..+..++|++.|||+||+++|++.+|||+++ | .+|+...+..+..++
T Consensus 162 v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~vl 241 (415)
T COG0814 162 VIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVL 241 (415)
T ss_pred HHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHHHHH
Confidence 6655554444432222111 111 11 35567899999999999999999999999999776 4 999999999999999
Q ss_pred HHHHHhHHHHhhcCCchhhhhhcCCCchhHH-------------HHHHHHHHHHHhhhhcchhcchHHHHHhhcCCCC-C
Q 013919 276 YGGVAVMGFLMFGQGTLSQITLNMPPHAFAS-------------KVAVWTTVINPFTKYALLMNPLARSIEELLPAGI-S 341 (434)
Q Consensus 276 Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~-------------~v~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~-~ 341 (434)
|..++..+|..+|+.+.++++.++++++... ...+++..+.+..|+--.....++..++.+.+.+ +
T Consensus 242 yi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~ 321 (415)
T COG0814 242 YILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSK 321 (415)
T ss_pred HHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhccCc
Confidence 9999999999999999999999998765322 2222333333334433333344455555543211 1
Q ss_pred -----ChhHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHHHHHHhhHHHHHHHhccccchhhHhhhHHHHHHHH
Q 013919 342 -----NNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILGRKATRTQIVSSTAIAVLGV 416 (434)
Q Consensus 342 -----~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~l~G~~~~~~~~~ilP~l~~l~~~~~~~~~~~~~~~~~~~~~g~ 416 (434)
.............+..+...+...|..+.++..+|+.....+.+..|...+.+....+..+.++...++++++|+
T Consensus 322 ~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi 401 (415)
T COG0814 322 PGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGI 401 (415)
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHH
Confidence 111222333444445566666667777777777788878888888887777666544433332356888899998
Q ss_pred HHHHHHHHHH
Q 013919 417 ICAILGTFSS 426 (434)
Q Consensus 417 ~~~v~g~~~s 426 (434)
..+..-.++.
T Consensus 402 ~~~~~~~~~~ 411 (415)
T COG0814 402 LVILSPFLAT 411 (415)
T ss_pred HHHHHHHHHH
Confidence 8888766654
No 9
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.96 E-value=4.4e-27 Score=227.35 Aligned_cols=365 Identities=18% Similarity=0.219 Sum_probs=269.3
Q ss_pred CCchHHHHHHHHHhhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcccchhh
Q 013919 45 GCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRL 123 (434)
Q Consensus 45 ~~s~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~ 123 (434)
+.+.+++++.+.+++||+|+|+||.+.+..|.. +.+++++.+..+.++++++.|...+.++..++.+++++.+||+|++
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~~ 81 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGGI 81 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHH
Confidence 467899999999999999999999999999998 9999999999999999999999988888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHHHHHHH
Q 013919 124 LISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATIL 203 (434)
Q Consensus 124 ~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~~ 203 (434)
+..+.+.+..++.+.+|....++.+.+.++.... .+.+ +.....+..++...+... +.+...+++..-+...+.
T Consensus 82 ~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~----~~~~-~~~~~~~f~~i~~~iv~~-g~~~v~~~n~~lv~~~i~ 155 (394)
T PF03222_consen 82 VIGISYLFLLYALLVAYISGGGSILSSLLGNQLG----TDLS-PWLSSLLFTIIFGGIVYF-GTKAVDRINRVLVFGMII 155 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC----CCCc-HHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999876431 1111 222222222222222222 334555555544443333
Q ss_pred HHHhhhhcccccccccC----CCCccccccchhhHHHHHHHhccCccchhhHHhhcc-chhhhHHHHHHHHHHHHHHHHH
Q 013919 204 IVLCVLFLGTIEGIGFH----PTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMA-DKTKFTKALITCFALCVLIYGG 278 (434)
Q Consensus 204 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~-~p~~~~~~~~~s~~~~~~~Y~~ 278 (434)
.+...... ..++++.+ .+....++...+.++|++.+||..|..+|++.+.++ |++|.+|++..+..+..++|++
T Consensus 156 ~~~~l~~~-~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~yl~ 234 (394)
T PF03222_consen 156 SFIILVVY-LIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMYLL 234 (394)
T ss_pred HHHHHHHH-HhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222 12222222 122345677888999999999999999999999997 7789999999999999999987
Q ss_pred HHhHHHH-----------hhcCCchh--hhhhcCCCchhHHHHHHHHHHHHHhhhhcchhcchHHHHHhhcCCCCCChhH
Q 013919 279 VAVMGFL-----------MFGQGTLS--QITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYW 345 (434)
Q Consensus 279 ~g~~gy~-----------~fg~~~~~--~il~~~~~~~~~~~v~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~ 345 (434)
.-..... ..+++..+ ..+.+..++.....+..++..+.+.+||--....++|.+++.+..+ +++.
T Consensus 235 w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~~--~~~~ 312 (394)
T PF03222_consen 235 WVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKLK--NNSS 312 (394)
T ss_pred HHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--cccc
Confidence 6443322 11111111 2334445555666677888888999999999999999999998763 3344
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-cHHHHHHHHhHHHHHHHHHHhhHHHHHHHhccccch-h----hHhhhHHHHHHHHHHH
Q 013919 346 CFILLRTALVFSSVCAAFLLP-FFSLVMALIGSLLSILVAIIMPSLCFIKILGRKATR-T----QIVSSTAIAVLGVICA 419 (434)
Q Consensus 346 ~~~~~~~~~~~~~~~la~~~p-~~~~~~~l~G~~~~~~~~~ilP~l~~l~~~~~~~~~-~----~~~~~~~~~~~g~~~~ 419 (434)
.|.....+....+.++|...| .|...+++.| ...+.+..++|+++.++.|+++... + .+.....++++|++..
T Consensus 313 ~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~~~~~~~gg~~~l~~~~~~~i~ii 391 (394)
T PF03222_consen 313 GRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKPKQPYRVPGGNFTLLLVIIFGILII 391 (394)
T ss_pred chHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCCCCeEEeCcHHHHHHHHHHHHHHH
Confidence 555556667778999999999 6999999999 8899999999999999998665432 2 2334444555554443
No 10
>PRK10483 tryptophan permease; Provisional
Probab=99.96 E-value=2.1e-26 Score=220.23 Aligned_cols=370 Identities=14% Similarity=0.113 Sum_probs=268.4
Q ss_pred CCCCchHHHHHHHHHhhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcccch
Q 013919 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYG 121 (434)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~ 121 (434)
+++.+.+++++.+.+++||+|+|++|.+.++.|+. +.++++++|..+.|++.++.|...+.++..++..++|+.+||.|
T Consensus 8 ~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG~~g 87 (414)
T PRK10483 8 QTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGW 87 (414)
T ss_pred cCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHH
Confidence 34588999999999999999999999999999999 99999999999999999999998888888999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHHHHH
Q 013919 122 RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVAT 201 (434)
Q Consensus 122 ~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~ 201 (434)
+.+.++++.+..++.+.+|+...++.+.+.+++.+.+ .+ +..-.++.+++.-.+... +.+...+++..-+...
T Consensus 88 ~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~-----i~-~~~~~llF~~~~~~iv~~-gt~~vd~~n~~l~~~~ 160 (414)
T PRK10483 88 NVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLN-----VP-ARAAGFGFALLVAFVVWL-STKAVSRMTAIVLGAK 160 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCC-----Cc-HHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998753211 11 222222333333333332 4456666665544443
Q ss_pred HHHHHhhhhccccccccc----CCC-CccccccchhhHHHHHHHhccCccchhhHHhhcc-chhhhHHHHHHHHHHHHHH
Q 013919 202 ILIVLCVLFLGTIEGIGF----HPT-GQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMA-DKTKFTKALITCFALCVLI 275 (434)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~-~p~~~~~~~~~s~~~~~~~ 275 (434)
+..++..+.. ..++.+. +.. .....+...+.+++++.+||..|.++|++.+.++ |++|.+|++..+..+..++
T Consensus 161 i~~f~~~~~~-l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs~Iplv~ 239 (414)
T PRK10483 161 VITFFLTFGS-LLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMALAL 239 (414)
T ss_pred HHHHHHHHHH-HHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHHHHHHHH
Confidence 3333322222 1112111 111 1112244688999999999999999999999986 5789999999999999999
Q ss_pred HHHHHhHHHHhhc-----------CCchh--hhhhcCCCchhHHHHHHHHHHHHHhhhhcchhcchHHHHHhhcCCCCCC
Q 013919 276 YGGVAVMGFLMFG-----------QGTLS--QITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISN 342 (434)
Q Consensus 276 Y~~~g~~gy~~fg-----------~~~~~--~il~~~~~~~~~~~v~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~~~ 342 (434)
|++.-......-+ ++.+. +.+.+..++.....+..++..+.+.+||--....++|.+.+.+..+++
T Consensus 240 yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~~~- 318 (414)
T PRK10483 240 YTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDS- 318 (414)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-
Confidence 9985444443322 22211 112222233455556677778899999999999999999999876542
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcc-cHHHHHHHHhHHHHHHHHHHhhHHHHHHHhcc-ccchhh----HhhhHHHHHHHH
Q 013919 343 NYWCFILLRTALVFSSVCAAFLLP-FFSLVMALIGSLLSILVAIIMPSLCFIKILGR-KATRTQ----IVSSTAIAVLGV 416 (434)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~la~~~p-~~~~~~~l~G~~~~~~~~~ilP~l~~l~~~~~-~~~~~~----~~~~~~~~~~g~ 416 (434)
+..|.....+..+++.++|...| .|-..+++.|.. ...+.-++|+++..+.||+ +...++ +.....++++|+
T Consensus 319 -~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~Gg~~~l~~~~~~g~ 396 (414)
T PRK10483 319 -AMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKRFGSPKFRVWGGKPMIVLILLFGV 396 (414)
T ss_pred -cccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCceecCCHHHHHHHHHHHH
Confidence 33455556677889999999999 599999999976 7788889999999999865 222222 333455566666
Q ss_pred HHHHHHH
Q 013919 417 ICAILGT 423 (434)
Q Consensus 417 ~~~v~g~ 423 (434)
...+.-.
T Consensus 397 ~~i~~~i 403 (414)
T PRK10483 397 GNALVHI 403 (414)
T ss_pred HHHHHHH
Confidence 5555433
No 11
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.96 E-value=8e-26 Score=216.00 Aligned_cols=367 Identities=13% Similarity=0.133 Sum_probs=264.6
Q ss_pred CchHHHHHHHHHhhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcccchhhH
Q 013919 46 CSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLL 124 (434)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~ 124 (434)
.+...++..+.+++||+|+|++|.+.++.|+. +.++++++|..+.|++.++.|...+.++..++..++|+.+||.|+.+
T Consensus 9 ~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~i 88 (415)
T PRK09664 9 HSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNII 88 (415)
T ss_pred cchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHHH
Confidence 46788999999999999999999999999999 99999999999999999999999888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHHHHHHHH
Q 013919 125 ISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILI 204 (434)
Q Consensus 125 ~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~~~ 204 (434)
.++...+..++.+.+|+...++.+.+.++... +.+.+ +....++.+++.-++... +.+...+++..-+...+..
T Consensus 89 ~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~----~~~i~-~~~~~llF~~~~~~~v~~-gt~~vd~~nr~l~~~~ii~ 162 (415)
T PRK09664 89 SGITVAFVLYILTYAYISANGAIISETISMNL----GYHAN-PRIVGICTAIFVASVLWI-SSLAASRITSLFLGLKIIS 162 (415)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc----cCCCc-HHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999986421 11121 222223333333333333 4456666665544333332
Q ss_pred HHhhhhcccccccccC---CCCccc----cccchhhHHHHHHHhccCccchhhHHhhcc-chhhhHHHHHHHHHHHHHHH
Q 013919 205 VLCVLFLGTIEGIGFH---PTGQVV----KWSGMPFAIGIYGFCYSGHSVFPNIYQSMA-DKTKFTKALITCFALCVLIY 276 (434)
Q Consensus 205 ~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~faf~~~~~i~~i~~~m~-~p~~~~~~~~~s~~~~~~~Y 276 (434)
++..+.. ..++.+.+ ...... .+...+.++|++.+||+.|.++|++.+.++ |++|.+|++..+..+..++|
T Consensus 163 f~~~~~~-l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~IpLviY 241 (415)
T PRK09664 163 FVIVFGS-FFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLALVIY 241 (415)
T ss_pred HHHHHHH-HhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 2222221 12221111 111111 123477899999999999999999999996 66799999999999999999
Q ss_pred HHHHhH--HH---------HhhcCCchhhhh--hcCCCchhHHHHHHHHHHHHHhhhhcchhcchHHHHHhhcCCCCCCh
Q 013919 277 GGVAVM--GF---------LMFGQGTLSQIT--LNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNN 343 (434)
Q Consensus 277 ~~~g~~--gy---------~~fg~~~~~~il--~~~~~~~~~~~v~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~~~~ 343 (434)
++.=.+ |. ...|++...-+. ..-.++.+...+..++..+.+.+||--....++|.+.+.+..++.
T Consensus 242 ~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~~~-- 319 (415)
T PRK09664 242 LFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDNS-- 319 (415)
T ss_pred HHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc--
Confidence 754222 21 122323332111 111334455556677778899999999999999999999866532
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcc-cHHHHHHHHhHHHHHHHHHHhhHHHHHHHhcc-ccchh----hHhhhHHHHHHHHH
Q 013919 344 YWCFILLRTALVFSSVCAAFLLP-FFSLVMALIGSLLSILVAIIMPSLCFIKILGR-KATRT----QIVSSTAIAVLGVI 417 (434)
Q Consensus 344 ~~~~~~~~~~~~~~~~~la~~~p-~~~~~~~l~G~~~~~~~~~ilP~l~~l~~~~~-~~~~~----~~~~~~~~~~~g~~ 417 (434)
+..|.....+..+++.++|.+.| .|-..+++.|.. .+.+.-++|+++-++.||+ ....+ .+...+..+.+|++
T Consensus 320 ~~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~GG~~~l~~~~~~g~~ 398 (415)
T PRK09664 320 HGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIVILFGIT 398 (415)
T ss_pred cccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCCceeeCCHHHHHHHHHHHHH
Confidence 33455556677889999999999 599999999996 7788899999999999875 22221 34556666667766
Q ss_pred HHHHH
Q 013919 418 CAILG 422 (434)
Q Consensus 418 ~~v~g 422 (434)
..+.-
T Consensus 399 ii~~~ 403 (415)
T PRK09664 399 VILCW 403 (415)
T ss_pred HHHHH
Confidence 65543
No 12
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.95 E-value=1.8e-26 Score=225.09 Aligned_cols=339 Identities=14% Similarity=0.139 Sum_probs=251.9
Q ss_pred HHHHHHhhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcccchhhHHHHHHH
Q 013919 52 IFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLY 130 (434)
Q Consensus 52 ~~~l~~~~iG~Gil~lP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~ 130 (434)
+..++++++|+|+|++|.++++.|+. +++.+++.+..+.+++.++.|...+.|+..++.+++++.+||++++++.+...
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~ 82 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLL 82 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHH
Confidence 45678999999999999999999988 99999999999999999999999888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHHHHHHHHHHhhhh
Q 013919 131 TELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLF 210 (434)
Q Consensus 131 ~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~~ 210 (434)
+.++..+.+|....++.+..+++..... .. ......++..++ +.....++.+...+++.+.+...+..++..+.
T Consensus 83 ~~~~~~~~ay~~~~~~~l~~~~~~~~~~----~~-~~~~~~~~~~~v-~~~l~~~G~~~~~~v~~i~~~~~l~~l~~~ii 156 (381)
T TIGR00837 83 FVLYILTYAYISGGGSILSRLIGEYFGF----PW-SARAIVLIFTVL-FGSFVWLSTSAVDRITRVLIFGKIIAFALVFS 156 (381)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHhcCC----Cc-cHHHHHHHHHHH-HHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998887643211 11 122222223333 33344567888888888877665554433333
Q ss_pred ccccc--ccccCCCCc-cccccchhhHHHHHHHhccCccchhhHHhhcc-chhhhHHHHHHHHHHHHHHHHHHHhHHHHh
Q 013919 211 LGTIE--GIGFHPTGQ-VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMA-DKTKFTKALITCFALCVLIYGGVAVMGFLM 286 (434)
Q Consensus 211 ~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~-~p~~~~~~~~~s~~~~~~~Y~~~g~~gy~~ 286 (434)
..... ..+..+... ..++.++..+++...++|++|++++++.+|++ |+||.+|++..+..++.++|+++.......
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g~ 236 (381)
T TIGR00837 157 GLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQLATMGN 236 (381)
T ss_pred HHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 22211 111111111 12455778899999999999989999999996 667999999999999999999887776665
Q ss_pred hcCCchhhhhhcC-------------CCchhHHHHHHHHHHHHHhhhhcchhcchHHHHHhhcCCCCCChhHHHHHHHHH
Q 013919 287 FGQGTLSQITLNM-------------PPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTA 353 (434)
Q Consensus 287 fg~~~~~~il~~~-------------~~~~~~~~v~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (434)
.+.+.-.+...+. .++.+...+...+..+.+.+++.-.....++.+.+.+++++++ .+|.....+
T Consensus 237 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~~--~~~~~~~~~ 314 (381)
T TIGR00837 237 LPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDSK--KGRFKTGLL 314 (381)
T ss_pred CCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc--CCCchhhhh
Confidence 5433222211111 1122344455666777888999998889999988888765322 224555677
Q ss_pred HHHHHHHHHhhccc-HHHHHHHHhHHHHHHHHHHhhHHHHHHHhccc
Q 013919 354 LVFSSVCAAFLLPF-FSLVMALIGSLLSILVAIIMPSLCFIKILGRK 399 (434)
Q Consensus 354 ~~~~~~~la~~~p~-~~~~~~l~G~~~~~~~~~ilP~l~~l~~~~~~ 399 (434)
....+.++|.+.|+ +...++.+| +.+..+.+++|++++++.|+++
T Consensus 315 ~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~~ 360 (381)
T TIGR00837 315 TFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKKF 360 (381)
T ss_pred hHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC
Confidence 77889999999995 558999999 7799999999999999987653
No 13
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.95 E-value=1.1e-25 Score=216.51 Aligned_cols=367 Identities=14% Similarity=0.155 Sum_probs=266.1
Q ss_pred chHHHHHHHHHhhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcccchhhHH
Q 013919 47 SFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLI 125 (434)
Q Consensus 47 s~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~ 125 (434)
+...+.+.+.+++||+|+|+||.+.+..|+. +++++++++.++.|+++.+.|+..+.++..++.+++|+.+||+|+++.
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i~ 83 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLT 83 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHHHH
Confidence 6789999999999999999999999999998 999999999999999999999888777778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHHHHHHHHH
Q 013919 126 SVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIV 205 (434)
Q Consensus 126 ~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~~~~ 205 (434)
.+.+.+..+..+.+|....++.+.+.++.+- +.+.+..... + ...+++.+....+.+...+++..-+...+..+
T Consensus 84 ~~~y~fl~y~ll~AYisg~g~il~~~l~~~~----~~~i~~~~~~-l-~F~~~~~~iv~~g~~~v~~~n~~L~~~~ii~~ 157 (403)
T PRK15132 84 GFSMMFLMYALTAAYISGAGELLASSISDWT----GISMSPTAGV-L-LFTLVAGGVVCVGTSSVDLFNRFLFSAKIIFL 157 (403)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHhc----cCCCChHHHH-H-HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888888775421 1112222221 2 22222222222244555555554433323222
Q ss_pred HhhhhcccccccccCCCC-ccccccchhhHHHHHHHhccCccchhhHHhhcc-chhhhHHHHHHHHHHHHHHHHHHHhHH
Q 013919 206 LCVLFLGTIEGIGFHPTG-QVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMA-DKTKFTKALITCFALCVLIYGGVAVMG 283 (434)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~-~p~~~~~~~~~s~~~~~~~Y~~~g~~g 283 (434)
+.. .....++++.+.-. ...+....+.++|++.+||+.|.++|++.+.++ |++|.+|++..+..+..++|+..-...
T Consensus 158 ~~~-~~~l~p~~~~~~L~~~~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~yl~W~~~~ 236 (403)
T PRK15132 158 VVM-LALMMPHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAYIFWQLAT 236 (403)
T ss_pred HHH-HHHHHHhcCHHHHhcCCccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 11222222221111 011122488999999999999999999999986 667999999999999999999876666
Q ss_pred HHhhcCCch----------hhhh---hcCCCchhHHHHHHHHHHHHHhhhhcchhcchHHHHHhhcCCCCCChhHHHHHH
Q 013919 284 FLMFGQGTL----------SQIT---LNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILL 350 (434)
Q Consensus 284 y~~fg~~~~----------~~il---~~~~~~~~~~~v~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (434)
...-+.+.. ++.+ .+..++.+...+..++..+.+.+||--....++|.+.+.+.++++ +..|...
T Consensus 237 lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~--~~~r~~~ 314 (403)
T PRK15132 237 LGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNT--VGGRLQT 314 (403)
T ss_pred HhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc--ccCCchh
Confidence 654432211 1122 222234455566777888899999999999999999999865432 3335666
Q ss_pred HHHHHHHHHHHHhhcc-cHHHHHHHHhHHHHHHHHHHhhHHHHHHHhccc-cchh----hHhhhHHHHHHHHHHHHHHH
Q 013919 351 RTALVFSSVCAAFLLP-FFSLVMALIGSLLSILVAIIMPSLCFIKILGRK-ATRT----QIVSSTAIAVLGVICAILGT 423 (434)
Q Consensus 351 ~~~~~~~~~~la~~~p-~~~~~~~l~G~~~~~~~~~ilP~l~~l~~~~~~-~~~~----~~~~~~~~~~~g~~~~v~g~ 423 (434)
..+..+.+.++|...| .|....++.|.. .+.+.+++|+++.++.|+++ .+.+ .+...+.++++|++..+.-.
T Consensus 315 ~~l~flppli~a~~~P~~F~~al~~aG~~-~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~~~~ 392 (403)
T PRK15132 315 GLITFLPPLAFALFYPRGFVMALGYAGVA-LAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIGIQF 392 (403)
T ss_pred ehhhHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHHHHH
Confidence 7778889999999999 688899999975 89999999999999998654 2122 45667778888887766533
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.91 E-value=5.7e-21 Score=182.77 Aligned_cols=367 Identities=12% Similarity=0.114 Sum_probs=257.9
Q ss_pred HHHHHHHhhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhC-CCCCCHHHHHHHhcccchhhHHHHH
Q 013919 51 TIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESK-EGITTYPDIGEAAFGKYGRLLISVL 128 (434)
Q Consensus 51 ~~~~l~~~~iG~Gil~lP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~y~~l~~~~~G~~~~~~~~~~ 128 (434)
-...+.++.||+|+|+||-..+..|.. +++++++.+.+++++++.+.|...+. ++..++.+++++.+||.|+.+..++
T Consensus 24 W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~il 103 (443)
T PRK13629 24 WTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFL 103 (443)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHH
Confidence 348999999999999999999999988 99999999999999999999987766 6678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHHHHHHHHHHhh
Q 013919 129 LYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCV 208 (434)
Q Consensus 129 ~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~ 208 (434)
+++..+..+.+|...+.+.+.+.+.+.- +.. .. ++....+ ...+.+......+-+.+-+++..-+...+..++..
T Consensus 104 Yff~ly~ll~aY~~~itn~l~sfl~~ql-~~~--~~-~r~l~sl-ifv~~l~~iv~~G~~~v~kv~~~Lv~~~i~~l~~l 178 (443)
T PRK13629 104 YFFAICPLLWIYGVTITNTFMTFWENQL-GFA--PL-NRGFVAL-FLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLI 178 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcC--Cc-cHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888887654321 000 11 1222222 22222222223344666666654443333222222
Q ss_pred hhcccccccccC---CCC-----cccc---ccchhhHHHHHHHhccCccchhhHHhh----cc-----c--hhhhHHHHH
Q 013919 209 LFLGTIEGIGFH---PTG-----QVVK---WSGMPFAIGIYGFCYSGHSVFPNIYQS----MA-----D--KTKFTKALI 266 (434)
Q Consensus 209 ~~~~~~~~~~~~---~~~-----~~~~---~~~~~~~~~~~~faf~~~~~i~~i~~~----m~-----~--p~~~~~~~~ 266 (434)
. ....++++.+ ..+ ...+ ....+.++|++.+||..|+.+|+.... .+ | ++|.+|++.
T Consensus 179 ~-~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~ 257 (443)
T PRK13629 179 S-LSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIIS 257 (443)
T ss_pred H-HHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 2 2222222211 111 1001 124778999999999999999999998 53 4 568899999
Q ss_pred HHHHHHHHHHHHHHhHHHHhhcCCch-----hh-----hhhc-CCCc--------hhHHHHHHHHHHHHHhhhhcchhcc
Q 013919 267 TCFALCVLIYGGVAVMGFLMFGQGTL-----SQ-----ITLN-MPPH--------AFASKVAVWTTVINPFTKYALLMNP 327 (434)
Q Consensus 267 ~s~~~~~~~Y~~~g~~gy~~fg~~~~-----~~-----il~~-~~~~--------~~~~~v~~~~~~~~~~~s~pl~~~~ 327 (434)
.+..+..++|+..-+.+...-+++.. +| .+.| +++. ........++..+++.+||--....
T Consensus 258 ~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LG 337 (443)
T PRK13629 258 RASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLG 337 (443)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888777776553221 11 1122 2221 3345556667777888999999999
Q ss_pred hHHHHHhhcCC----C---CCChhHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHHHHHHhhHHHHHHHhcccc
Q 013919 328 LARSIEELLPA----G---ISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILGRKA 400 (434)
Q Consensus 328 ~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~l~G~~~~~~~~~ilP~l~~l~~~~~~~ 400 (434)
++|.++.++.+ . +.+.+..+......+.+.+..++..-|++-.++.-.|+--...+.|++|...-+|...-++
T Consensus 338 l~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~~ 417 (443)
T PRK13629 338 TLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAK 417 (443)
T ss_pred HHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHHH
Confidence 99999887731 1 1234445666677777888999999999999999777777888999999998888643221
Q ss_pred chhhHhhhHHHHHHHHHHHHHHHH
Q 013919 401 TRTQIVSSTAIAVLGVICAILGTF 424 (434)
Q Consensus 401 ~~~~~~~~~~~~~~g~~~~v~g~~ 424 (434)
. +++..++.+++.|++......|
T Consensus 418 y-r~~~~n~fv~~~Gl~~i~~~~~ 440 (443)
T PRK13629 418 Y-RGRLDNVFVTVIGLLTILNIVY 440 (443)
T ss_pred h-CCCchhHHHHHHHHHHHHHHHH
Confidence 1 1234578888888887766555
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.88 E-value=3.1e-20 Score=179.34 Aligned_cols=361 Identities=12% Similarity=0.120 Sum_probs=253.8
Q ss_pred HHHHHHHHHhhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCC-CCCHHHHHHHhcccchhhHHH
Q 013919 49 TQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEG-ITTYPDIGEAAFGKYGRLLIS 126 (434)
Q Consensus 49 ~~~~~~l~~~~iG~Gil~lP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~y~~l~~~~~G~~~~~~~~ 126 (434)
..-.+.+.++++|+|+|.+|...++.||. .++..++...+++++++.+.|.....+. ..++.|++++.+||+++.+..
T Consensus 6 ~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~ 85 (397)
T TIGR00814 6 TGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILIT 85 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHH
Confidence 45678899999999999999999999999 7777778888888888888888554443 789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHHHHHHHHHH
Q 013919 127 VLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVL 206 (434)
Q Consensus 127 ~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~~~~~ 206 (434)
+.+.+..+..+.+|....++.+.+++.+.... +. ..+....+..++.+......+.+.+.+++.+-+...+...+
T Consensus 86 ~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~----~~-p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~ 160 (397)
T TIGR00814 86 LLYFFAIYPILLIYSVAITNDSASFLVNQLGT----AP-PLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILV 160 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CC-cHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888887776542110 11 12222223333333334445778888888776644433333
Q ss_pred hhhhcccccccccC---CCCcc-ccccchhhHHHHHHHhccCccchhhHH----hhcc--c--hhhhHHHHHHHHHHHHH
Q 013919 207 CVLFLGTIEGIGFH---PTGQV-VKWSGMPFAIGIYGFCYSGHSVFPNIY----QSMA--D--KTKFTKALITCFALCVL 274 (434)
Q Consensus 207 ~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~faf~~~~~i~~i~----~~m~--~--p~~~~~~~~~s~~~~~~ 274 (434)
...... .++++.+ ..++. ..+.++..+++...+||.+|+.+++.. +|.+ | ++|.+|+...+..+.++
T Consensus 161 ~l~~~l-ip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~ 239 (397)
T TIGR00814 161 LLSLYL-IPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVA 239 (397)
T ss_pred HHHHHH-HHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHH
Confidence 222222 2222211 11111 235678999999999999999999998 3444 3 45889999999999999
Q ss_pred HHHHHHhHHHHhhcCCchh-----h--hh---hcCCCchhHHHHHHHHHHHHHhhhhcchhcchHHHHHhhcC----C--
Q 013919 275 IYGGVAVMGFLMFGQGTLS-----Q--IT---LNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLP----A-- 338 (434)
Q Consensus 275 ~Y~~~g~~gy~~fg~~~~~-----~--il---~~~~~~~~~~~v~~~~~~~~~~~s~pl~~~~~~~~~~~~~~----~-- 338 (434)
+|+..-+.+....+.+... | .+ .|..++.....+..++..+.+.+|+--....++|.+++++. .
T Consensus 240 ~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~ 319 (397)
T TIGR00814 240 TVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKG 319 (397)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccc
Confidence 9998888777776643321 1 11 22223345556667777788899999999999999998872 1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHHHHHHhhHHHHHHHhccccchhhHhhhHHHHHHHH
Q 013919 339 GISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILGRKATRTQIVSSTAIAVLGV 416 (434)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~l~G~~~~~~~~~ilP~l~~l~~~~~~~~~~~~~~~~~~~~~g~ 416 (434)
++.+++........+....+..++..-|++-.++.-.|+--.+.+.|++|...-+|...-++. +++..++.+++.|+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~l~~~-~~~~~~~fv~~~g~ 396 (397)
T TIGR00814 320 KKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVPALKKY-RGRISNVFVTVIGL 396 (397)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccHHHHHh-CCCcchheeEeeec
Confidence 122344445566677778889999999999999996666668889999999988886432211 12245666666554
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=99.82 E-value=5.6e-17 Score=161.21 Aligned_cols=234 Identities=16% Similarity=0.112 Sum_probs=163.3
Q ss_pred CCCCchHHHHHHHHHhhhccccchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcccchh
Q 013919 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGR 122 (434)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~ 122 (434)
+|+.|.++.+...+++++|+|++.+|..+++.|..+++.+++.++........+.|...+.|+.....+++++.+||+.+
T Consensus 5 ~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~~~g 84 (438)
T PRK10655 5 SNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGTISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGKSGN 84 (438)
T ss_pred cCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCcchH
Confidence 56699999999999999999999999888888877888999999999999999999988888888889999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHH-HHHHHHhhhhccccCchhhHhhHHHHHHH
Q 013919 123 LLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGI-LTALIVLPTIWLRDLRVISYLSATGVVAT 201 (434)
Q Consensus 123 ~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~pl~~~~~~~~l~~~s~~~~~~~ 201 (434)
+++.+.+.+.......+......+++..+++... +....+.+ +..+...-....++.+...+++.+.....
T Consensus 85 f~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~--------~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~~ 156 (438)
T PRK10655 85 FMANYTYGVSLLIANVAIAISAVGYGTELFGATL--------SPVQICLATIGVLWLCTVANFGGARITGQISSVTVWGV 156 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--------chHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 9999987776655555555555566666654211 11111111 11122222234456666666665554433
Q ss_pred HHHHHhhhhcc--cccccccCCC--Cc-cccccchhhHHHHHHHhccCccchhhHHhhccchh-hhHHHHHHHHHHHHHH
Q 013919 202 ILIVLCVLFLG--TIEGIGFHPT--GQ-VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFALCVLI 275 (434)
Q Consensus 202 ~~~~~~~~~~~--~~~~~~~~~~--~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~s~~~~~~~ 275 (434)
+...+.+.... ..+..+..+. +. ...+.++..++....|+|.|.+.+..+.+|+|||+ +.||++..+..++.++
T Consensus 157 l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~ 236 (438)
T PRK10655 157 IIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTLGAAVI 236 (438)
T ss_pred HHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHHHHHH
Confidence 33222222111 1111111110 11 11123566678889999999999999999999997 7999999999999999
Q ss_pred HHHHHhHHH
Q 013919 276 YGGVAVMGF 284 (434)
Q Consensus 276 Y~~~g~~gy 284 (434)
|++......
T Consensus 237 Y~l~~~~~~ 245 (438)
T PRK10655 237 YIVSTNVIA 245 (438)
T ss_pred HHHHHHHHH
Confidence 998765544
No 17
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.81 E-value=3.8e-18 Score=163.55 Aligned_cols=358 Identities=14% Similarity=0.122 Sum_probs=232.1
Q ss_pred CCccCCCCCchHHHHHHHHHhhhccccchhHHHH-HhhcHH--HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHH
Q 013919 38 GELPIAHGCSFTQTIFNGINVMAGVGLLSTPYTV-KEAGWA--SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGE 114 (434)
Q Consensus 38 ~~~~~~~~~s~~~~~~~l~~~~iG~Gil~lP~a~-~~~G~~--g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~ 114 (434)
++.+.+|+.+.+.+++.+++++||+|++..|..+ +++|.+ +++.++++++++...+++++|.....|+......+..
T Consensus 6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi~ 85 (479)
T KOG1287|consen 6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYIS 85 (479)
T ss_pred ccccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhHH
Confidence 4455678899999999999999999999999776 677765 6678889999999999999999888888877778899
Q ss_pred HhcccchhhHHHHHHHHHHHHHH-HHHHHHhhhh-hhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhh-
Q 013919 115 AAFGKYGRLLISVLLYTELYSYC-VEFIILEGDN-LTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVIS- 191 (434)
Q Consensus 115 ~~~G~~~~~~~~~~~~~~~~g~~-~~y~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~- 191 (434)
++||+..++...+.-.+...... ..+.+.++++ +++.++... .+ +.....+.+.++..+.. .|...++
T Consensus 86 ~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~--~p------~~~~~lla~~~l~~lt~-~n~~~V~~ 156 (479)
T KOG1287|consen 86 EAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCD--VP------RVASKLLAAALLVLLTL-INSFSVKW 156 (479)
T ss_pred HHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCC--Cc------hHHHHHHHHHHHHHHHH-HhhhhhhH
Confidence 99999888776665555544444 7788888888 777776311 11 11122222222222222 2444444
Q ss_pred --HhhHHHHHHHHHHHHhhhhcccc----cccc---cC-CCCccccccchhhHHHHHHHhccCccchhhHHhhccchh-h
Q 013919 192 --YLSATGVVATILIVLCVLFLGTI----EGIG---FH-PTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-K 260 (434)
Q Consensus 192 --~~s~~~~~~~~~~~~~~~~~~~~----~~~~---~~-~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~ 260 (434)
+++.+..++.+.....++..+.. ...+ .+ .+....+..++..++-...|||.|+..+..+.+|+|||+ .
T Consensus 157 a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~kt 236 (479)
T KOG1287|consen 157 ATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRT 236 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCcccc
Confidence 44444444444433333332211 1111 11 233345566788999999999999999999999999997 6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHhhc--CCchhhhh-hcCC---CchhHHHHHHHHHHHHHhhhhcchhcchHHHH--
Q 013919 261 FTKALITCFALCVLIYGGVAVMGFLMFG--QGTLSQIT-LNMP---PHAFASKVAVWTTVINPFTKYALLMNPLARSI-- 332 (434)
Q Consensus 261 ~~~~~~~s~~~~~~~Y~~~g~~gy~~fg--~~~~~~il-~~~~---~~~~~~~v~~~~~~~~~~~s~pl~~~~~~~~~-- 332 (434)
+||++.+++.+++++|+++-+..+.+-. +-..++.. -.+. -+++. ....++..++.+.+.-..++...|.+
T Consensus 237 LP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~ 315 (479)
T KOG1287|consen 237 LPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYA 315 (479)
T ss_pred chHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 9999999999999999999887665442 11111111 0011 11122 33344455555555544444443333
Q ss_pred ---HhhcCCCC-CChhHH-HHHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHHHHHHhhHHHHHHHhccccchhhH
Q 013919 333 ---EELLPAGI-SNNYWC-FILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILGRKATRTQI 405 (434)
Q Consensus 333 ---~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~la~~~p~~~~~~~l~G~~~~~~~~~ilP~l~~l~~~~~~~~~~~~ 405 (434)
|.++|... ..+.+. .-...+++.....++..+..|+..++++.+-.......+.+=+++++|.++++.++.-|
T Consensus 316 ~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rPiK 393 (479)
T KOG1287|consen 316 GAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRPIK 393 (479)
T ss_pred HHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCEe
Confidence 33444330 001111 12223444455555566667999999999999888888999999999988776555444
No 18
>PRK11021 putative transporter; Provisional
Probab=99.80 E-value=4.8e-16 Score=153.11 Aligned_cols=341 Identities=17% Similarity=0.161 Sum_probs=202.5
Q ss_pred CchHHHHHHHHHhhhccccchhHHHH-HhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcccchhhH
Q 013919 46 CSFTQTIFNGINVMAGVGLLSTPYTV-KEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLL 124 (434)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~lP~a~-~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~ 124 (434)
.++++++...+++|||+|++.+|... +.+|...++.+++.++.....+..+.|...+.|+......++++.+||+.+++
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf~ 80 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGRV 80 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHHH
Confidence 37899999999999999999999655 56665588889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHHHHHHHH
Q 013919 125 ISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILI 204 (434)
Q Consensus 125 ~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~~~ 204 (434)
..+...........+......+++...++... .......+...+++-+...++.+..++++....+..+..
T Consensus 81 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~i 151 (410)
T PRK11021 81 TGWLFLSVIPVGLPAALQIAAGFGQALFGWSS---------WQLLLAELLTLALLWLLNLRGASSSANLQTVIALLIVAL 151 (410)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCC---------chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 99887764433333444444556555554210 111222222233333445567777777666543322221
Q ss_pred HHhhhhcccccccccCCC-CccccccchhhHHHHHHHhccCccchhhHHhhccchh-hhHHHHHHHHHHHHHHHHHHHhH
Q 013919 205 VLCVLFLGTIEGIGFHPT-GQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFALCVLIYGGVAVM 282 (434)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~s~~~~~~~Y~~~g~~ 282 (434)
..........+..+.+.. ....++.++..++....|+|.|.+.+....+|+|||+ +.||++..+..++.++|++....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 152 VVAIWWAGDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred HHHHHHHcCCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHH
Confidence 111111111111111111 1123456788899999999999999999999999997 69999999999999999998765
Q ss_pred HH--HhhcCCchh--h---hhhc-CCCchhHHHHHHHHHHHHHhhhhcchhcchHHHH-----HhhcCCC----CC-Chh
Q 013919 283 GF--LMFGQGTLS--Q---ITLN-MPPHAFASKVAVWTTVINPFTKYALLMNPLARSI-----EELLPAG----IS-NNY 344 (434)
Q Consensus 283 gy--~~fg~~~~~--~---il~~-~~~~~~~~~v~~~~~~~~~~~s~pl~~~~~~~~~-----~~~~~~~----~~-~~~ 344 (434)
-. ..+++...+ . .... +.+ ....+..+...+..+.+.........|.+ |+.+|+. .+ +..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~G~--~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~k~~~~~tP 309 (410)
T PRK11021 232 VLHFPAYGDKQAAAASLPGIFVQLFGG--YALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLARLSARGVP 309 (410)
T ss_pred HHhcCCCcchhhccccHHHHHHHHhCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHhhccCCCc
Confidence 32 222222111 1 1111 111 11112222222333333322222222322 2334422 11 112
Q ss_pred HHHHHHHHHHHHHHHHHHh-hcccHHHHHHHHhHHHHHHHHHHhhHHHHHHHhccc
Q 013919 345 WCFILLRTALVFSSVCAAF-LLPFFSLVMALIGSLLSILVAIIMPSLCFIKILGRK 399 (434)
Q Consensus 345 ~~~~~~~~~~~~~~~~la~-~~p~~~~~~~l~G~~~~~~~~~ilP~l~~l~~~~~~ 399 (434)
.........+.....++.. ...+++.+.+... ....+.|+++.+-.+++++++
T Consensus 310 ~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~--~~~li~y~~~~~a~~~l~~~~ 363 (410)
T PRK11021 310 VNALNAVLGCCAVSILLIYALGLNLEALIAYAN--GIFVLIYLLCMLAACKLLKGR 363 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHHHHHHhccc
Confidence 2222222222222222222 2357888877744 346788898888888876543
No 19
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.80 E-value=1.7e-16 Score=157.28 Aligned_cols=237 Identities=13% Similarity=0.067 Sum_probs=167.4
Q ss_pred CCCCCchHHHHHHHHHhhhccccchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcccch
Q 013919 42 IAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYG 121 (434)
Q Consensus 42 ~~~~~s~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~ 121 (434)
.+|+.+.++.+...++++||+|++.+|...++.|...++.+++.++.....+..+.|...+.|......+++++ +||..
T Consensus 3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~~~ 81 (435)
T PRK10435 3 SAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSIAIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISPAF 81 (435)
T ss_pred CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCcHH
Confidence 35669999999999999999999999999988887678888888999999999999999999998888899999 89999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHHHHH
Q 013919 122 RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVAT 201 (434)
Q Consensus 122 ~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~ 201 (434)
++.+.+..+...+....++.....+++..+++....+ . ......+..+.++-+...++.+..+.++.+..+..
T Consensus 82 gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~~-----~--~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i~~~~~ 154 (435)
T PRK10435 82 GFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDP-----I--PAGIACIAIVWVFTFVNMLGGTWVSRLTTIGLVLV 154 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCh-----H--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999887776554555556566667777666532110 0 11111111222222344456666666665555443
Q ss_pred HHHHHhhhhccc--cccc----ccCCCCccccccchhhHHHHHHHhccCccchhhHHhhccchh-hhHHHHHHHHHHHHH
Q 013919 202 ILIVLCVLFLGT--IEGI----GFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFALCVL 274 (434)
Q Consensus 202 ~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~s~~~~~~ 274 (434)
+..++.....+. .+.. +++ +....++.++..++....|+|.|.+.+....+|+|||+ +.||++..+..++.+
T Consensus 155 li~~~~~~i~g~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~iv~i 233 (435)
T PRK10435 155 LIPVVGTAIVGWHWFDAATYAANWN-TSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGI 233 (435)
T ss_pred HHHHHHHHHHHHHHcCHHhhccccc-CCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHHHHHH
Confidence 322222211111 1110 111 11123356788899999999999999999999999996 799999999999999
Q ss_pred HHHHHHhHHHHhh
Q 013919 275 IYGGVAVMGFLMF 287 (434)
Q Consensus 275 ~Y~~~g~~gy~~f 287 (434)
+|++..+......
T Consensus 234 lYil~~~~~~~~~ 246 (435)
T PRK10435 234 IYIAATQVISGMF 246 (435)
T ss_pred HHHHHHHHHHhcC
Confidence 9998887655443
No 20
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.80 E-value=2.4e-16 Score=156.86 Aligned_cols=239 Identities=10% Similarity=0.113 Sum_probs=164.0
Q ss_pred CCCCCchHHHHHHHHHhhhccccchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcccch
Q 013919 42 IAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYG 121 (434)
Q Consensus 42 ~~~~~s~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~ 121 (434)
.+|+.|.++.+...+++++|+|++.+|...++.|...+..+++.++.....+..+.|.+.+.|+.....+.+++.+||..
T Consensus 6 ~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~~g~~~ 85 (445)
T PRK10644 6 DAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCFGPFL 85 (445)
T ss_pred cCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHcCchH
Confidence 45679999999999999999999999998888776566777888888888899999999999998888899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHHHHH
Q 013919 122 RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVAT 201 (434)
Q Consensus 122 ~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~ 201 (434)
++++.+...+.......+......++...+++....+ .......+..+..+-....+..|...+++.......
T Consensus 86 gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~~~~ 158 (445)
T PRK10644 86 GYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDP-------LVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLA 158 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCc-------HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 9998888776654444554444555555554422100 011111122222233334456677777776655444
Q ss_pred HHHHHhhhhccc--ccccccCCC---CccccccchhhHHHHHHHhccCccchhhHHhhccchh-hhHHHHHHHHHHHHHH
Q 013919 202 ILIVLCVLFLGT--IEGIGFHPT---GQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFALCVLI 275 (434)
Q Consensus 202 ~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~s~~~~~~~ 275 (434)
+...+....... .+....... ....++..+..++....|+|.|.+......+|+|||+ +.||++..+..++.++
T Consensus 159 ~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~~i~~v~ 238 (445)
T PRK10644 159 LIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVC 238 (445)
T ss_pred HHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHHHHHHHH
Confidence 332222221111 111111110 1112234566678889999999999999999999997 7999999999999999
Q ss_pred HHHHHhHHHHhh
Q 013919 276 YGGVAVMGFLMF 287 (434)
Q Consensus 276 Y~~~g~~gy~~f 287 (434)
|++..+......
T Consensus 239 Y~l~~~~~~~~~ 250 (445)
T PRK10644 239 YVLSSTAIMGMI 250 (445)
T ss_pred HHHHHHHHHhCC
Confidence 999887644433
No 21
>PRK10249 phenylalanine transporter; Provisional
Probab=99.80 E-value=4.4e-16 Score=155.21 Aligned_cols=343 Identities=15% Similarity=0.199 Sum_probs=206.9
Q ss_pred cCCCCCchHHHHHHHHHhhhccccchhHHH-HHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhccc
Q 013919 41 PIAHGCSFTQTIFNGINVMAGVGLLSTPYT-VKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK 119 (434)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP~a-~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~ 119 (434)
+.+|+.+.++.....++.+||+|++..|.. .+++|...++.+++.+++....+..+.|...+.|...+...++++.+|+
T Consensus 18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~~~g~ 97 (458)
T PRK10249 18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGP 97 (458)
T ss_pred hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCh
Confidence 456779999999999999999999999855 4666766778889999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHHH
Q 013919 120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (434)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~ 199 (434)
+.++++.+..++.......+.....+.+++.+++.. ......+..+.++-....++.+..+++.....+
T Consensus 98 ~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~~~~~~~l~~~lN~~gv~~~~~i~~~~~~ 166 (458)
T PRK10249 98 FAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDV-----------PTWIWAAAFFIIINAVNLVNVRLYGETEFWFAL 166 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC-----------cHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHH
Confidence 999999998887766566666666666666554321 111112222223333444566666666544332
Q ss_pred HHHHHHHhh----hhc--cccccc--ccCC---CC--ccccccchhhHHHHHHHhccCccchhhHHhhccchh-hhHHHH
Q 013919 200 ATILIVLCV----LFL--GTIEGI--GFHP---TG--QVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKAL 265 (434)
Q Consensus 200 ~~~~~~~~~----~~~--~~~~~~--~~~~---~~--~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~ 265 (434)
..+..++.. ++. ....+. +.+. .. ...++.++..++....|+|.|.+.+....+|+|||+ +.||++
T Consensus 167 ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPrai 246 (458)
T PRK10249 167 IKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKAV 246 (458)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHHHH
Confidence 222111111 111 111110 1110 00 112345678899999999999999999999999997 699999
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhcCCch----hhhh---hcCCCchhHHHHHHHHHHHHHhhhhcchhcchHHHHHh----
Q 013919 266 ITCFALCVLIYGGVAVMGFLMFGQGTL----SQIT---LNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEE---- 334 (434)
Q Consensus 266 ~~s~~~~~~~Y~~~g~~gy~~fg~~~~----~~il---~~~~~~~~~~~v~~~~~~~~~~~s~pl~~~~~~~~~~~---- 334 (434)
..+.....++|+..........+++.. ++.. .+.. .+....+..+...+..+.+..-..+...|.+..
T Consensus 247 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~a~ard 325 (458)
T PRK10249 247 NQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLD-SNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQ 325 (458)
T ss_pred HHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999998755544333332211 1111 1111 112222222233333333333223333333322
Q ss_pred -hcCCC-----CCChhHHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHhHHHHHHHHHHhhHHHHHHHhc
Q 013919 335 -LLPAG-----ISNNYWCFILLRTALVFSSVCAAFLLP--FFSLVMALIGSLLSILVAIIMPSLCFIKILG 397 (434)
Q Consensus 335 -~~~~~-----~~~~~~~~~~~~~~~~~~~~~la~~~p--~~~~~~~l~G~~~~~~~~~ilP~l~~l~~~~ 397 (434)
.+|+. +++..........++..+..++....| .++.+.+..+. ...+.|++|++.+++.|+
T Consensus 326 g~lP~~~~kv~~~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~--~~~i~y~~~~~~~l~~r~ 394 (458)
T PRK10249 326 GNAPKFLTRVSRRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVA--TLLLNWIMICLAHLRFRA 394 (458)
T ss_pred CCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 23321 111122233333333333333333344 35555555333 467899999999998874
No 22
>TIGR00909 2A0306 amino acid transporter.
Probab=99.79 E-value=1.1e-16 Score=158.87 Aligned_cols=242 Identities=18% Similarity=0.216 Sum_probs=173.2
Q ss_pred CCCCchHHHHHHHHHhhhccccchhHHHHH-hhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcccch
Q 013919 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVK-EAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYG 121 (434)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~lP~a~~-~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~ 121 (434)
+|+.|.++.++..+++++|+|++.+|.... ..|...++.+++.++.....+..+.|..++.|+..+..+..++.+||+.
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~~ 81 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPAVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGELT 81 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCcHH
Confidence 467999999999999999999999996654 4454477778888888888999999999889988888899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCccc----Cch-hHHHHHHHHHHhhhhccccCchhhHhhHH
Q 013919 122 RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQL----DST-HLFGILTALIVLPTIWLRDLRVISYLSAT 196 (434)
Q Consensus 122 ~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~i~~pl~~~~~~~~l~~~s~~ 196 (434)
+++..+...+........+....++++..+++....+.+.+.. +.. .....+..+++.-+...++.+..++++.+
T Consensus 82 g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~~~~v 161 (429)
T TIGR00909 82 AFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKVNDI 161 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 9999998888877777788888888887776532111111000 000 11122233333334455678888888877
Q ss_pred HHHHHHHHHHhhhhcccc--cccccCCCCccccccchhhHHHHHHHhccCccchhhHHhhccchh-hhHHHHHHHHHHHH
Q 013919 197 GVVATILIVLCVLFLGTI--EGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFALCV 273 (434)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~s~~~~~ 273 (434)
.....+...+.++..... +..++++ ....++.++..++....|+|.|.+.+....+|+|||+ +.+|++..+..++.
T Consensus 162 ~~~~~i~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~~~~~ 240 (429)
T TIGR00909 162 LVVLKVAALLLFAALGAIHFASNNYTP-FMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLIVVT 240 (429)
T ss_pred HHHHHHHHHHHhhhHHHhhCcHHhcCC-CCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHHHHHH
Confidence 766555444332222211 1111111 1123455678889999999999999999999999996 68999999999999
Q ss_pred HHHHHHHhHHHH
Q 013919 274 LIYGGVAVMGFL 285 (434)
Q Consensus 274 ~~Y~~~g~~gy~ 285 (434)
++|++.......
T Consensus 241 v~Yil~~~~~~~ 252 (429)
T TIGR00909 241 LLYVLVAAVILG 252 (429)
T ss_pred HHHHHHHHHHhc
Confidence 999988765543
No 23
>PRK15049 L-asparagine permease; Provisional
Probab=99.79 E-value=4.7e-16 Score=156.28 Aligned_cols=346 Identities=12% Similarity=0.105 Sum_probs=202.5
Q ss_pred cCCCCCchHHHHHHHHHhhhccccchhHH-HHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhccc
Q 013919 41 PIAHGCSFTQTIFNGINVMAGVGLLSTPY-TVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK 119 (434)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP~-a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~ 119 (434)
+.+|+.+.++..+..++++||+|++..|. +++.+|..+++.+++.+++....+..+.|.+.+.|...+...++++.+|+
T Consensus 25 ~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~~G~ 104 (499)
T PRK15049 25 GYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFLGE 104 (499)
T ss_pred hhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCc
Confidence 35677999999999999999999999985 56777766888889999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHHH
Q 013919 120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (434)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~ 199 (434)
+.++++.+..++.............+.+.... +... + ...+...+..++++-+...++.+...+++.....
T Consensus 105 ~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~~~----~----~~~~~~~~~~~~l~~~iN~~gvk~~~~i~~~~~~ 175 (499)
T PRK15049 105 KAAYVAGWMYFINWAMTGIVDITAVALYMHYW-GAFG----G----VPQWVFALAALTIVGTMNMIGVKWFAEMEFWFAL 175 (499)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCC----C----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887765444443343444443321 1110 0 1112222222333333444566666666654432
Q ss_pred HHHHHHHhhh---hcccccccc--cCC-------C-Cc--cccccchhhHHHHHHHhccCccchhhHHhhccchh-hhHH
Q 013919 200 ATILIVLCVL---FLGTIEGIG--FHP-------T-GQ--VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTK 263 (434)
Q Consensus 200 ~~~~~~~~~~---~~~~~~~~~--~~~-------~-~~--~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~ 263 (434)
..+..++..+ ......+.+ .+. + .. +..+..+..++....|+|.|.+.+....+|+|||+ +.||
T Consensus 176 iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~iPr 255 (499)
T PRK15049 176 IKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPK 255 (499)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhhHHHH
Confidence 2222111111 111011110 000 0 00 01122344556678999999999999999999998 5999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhcCCch----hhhhh--cCCCchhHHHHHHHHHHHHHhhhhcchhcchHHHHHh---
Q 013919 264 ALITCFALCVLIYGGVAVMGFLMFGQGTL----SQITL--NMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEE--- 334 (434)
Q Consensus 264 ~~~~s~~~~~~~Y~~~g~~gy~~fg~~~~----~~il~--~~~~~~~~~~v~~~~~~~~~~~s~pl~~~~~~~~~~~--- 334 (434)
++..++..+.++|+..........+.+.. ++... +....+....+..+..++..+.+.--..+...|.+..
T Consensus 256 Ai~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ar 335 (499)
T PRK15049 256 AINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAM 335 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999876654444332111 11111 1111112222333333344444443333444444432
Q ss_pred --hcCCC----CC-ChhHHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHhHHHHHHHHHHhhHHHHHHHhc
Q 013919 335 --LLPAG----IS-NNYWCFILLRTALVFSSVCAAFLLP--FFSLVMALIGSLLSILVAIIMPSLCFIKILG 397 (434)
Q Consensus 335 --~~~~~----~~-~~~~~~~~~~~~~~~~~~~la~~~p--~~~~~~~l~G~~~~~~~~~ilP~l~~l~~~~ 397 (434)
.+|+. .+ .......+...++..+..++....| .++.++++.+ .+..+.|++|++.+++.|+
T Consensus 336 dg~lP~~f~kv~k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~--~~~li~y~~~~~~~l~~R~ 405 (499)
T PRK15049 336 GGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFAS--LGIIASWAFIIVCQMRLRK 405 (499)
T ss_pred cCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 23322 11 1122223333333333333333334 3666677644 4577899999999998865
No 24
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.79 E-value=4.7e-16 Score=155.63 Aligned_cols=347 Identities=14% Similarity=0.144 Sum_probs=206.3
Q ss_pred CCCchHHHHHHHHHhhhccccchhHHHH-HhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCC-CHHHHHHHhcccc
Q 013919 44 HGCSFTQTIFNGINVMAGVGLLSTPYTV-KEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGIT-TYPDIGEAAFGKY 120 (434)
Q Consensus 44 ~~~s~~~~~~~l~~~~iG~Gil~lP~a~-~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~y~~l~~~~~G~~ 120 (434)
|+.|.++.+...++++||+|++.+|... +.+|.. .++.+++.++.....+..+.|.+.+.|+.. ...+++++.+||+
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~~ 80 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGPF 80 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCcH
Confidence 4689999999999999999999999775 466655 566788899999999999999998888764 7889999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHH-HHHHHHHHhhhhccccCchhhHhhHHHHH
Q 013919 121 GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLF-GILTALIVLPTIWLRDLRVISYLSATGVV 199 (434)
Q Consensus 121 ~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~pl~~~~~~~~l~~~s~~~~~ 199 (434)
.++++.+..++.......++.....+.+...++..... .....+ .....+..+-....++.+..++++....+
T Consensus 81 ~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~ 154 (468)
T TIGR03810 81 MGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGG------NNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTI 154 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC------CcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 99999998887765556666666666665555432110 011111 11222222333344677777777766554
Q ss_pred HHHHHHHhhhhcc--cccccc-----cCCCC--c-c-ccccchhhHHHHHHHhccCccchhhHHhhccchhhhHHHHHHH
Q 013919 200 ATILIVLCVLFLG--TIEGIG-----FHPTG--Q-V-VKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITC 268 (434)
Q Consensus 200 ~~~~~~~~~~~~~--~~~~~~-----~~~~~--~-~-~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~s 268 (434)
..+...+..+..+ ...... ++... . . ..+.++..++....|+|.|.+....+.+|.||+|+.+|++..+
T Consensus 155 ~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ip~ai~~~ 234 (468)
T TIGR03810 155 AKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSDVGKATVIG 234 (468)
T ss_pred HHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCcccchHHHHHH
Confidence 4433222211111 111111 11100 0 1 1123455788889999999999999999999988999999999
Q ss_pred HHHHHHHHHHHHhHHHHhhcCCch----hh----hhhcCCCchhHHHHHHHHHHHHHhhhhcchhcchHHHHH-----hh
Q 013919 269 FALCVLIYGGVAVMGFLMFGQGTL----SQ----ITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIE-----EL 335 (434)
Q Consensus 269 ~~~~~~~Y~~~g~~gy~~fg~~~~----~~----il~~~~~~~~~~~v~~~~~~~~~~~s~pl~~~~~~~~~~-----~~ 335 (434)
...+.++|++..+..+...+++.. ++ ...+.. +++...+..+..+++.+.+.--......|... +.
T Consensus 235 ~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~-g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~ 313 (468)
T TIGR03810 235 LIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMV-GTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKL 313 (468)
T ss_pred HHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999988776654432111 11 111111 11222233333344444433333333333322 23
Q ss_pred cCCC----CC-ChhHHHHHHHHHHHHHHHHHHhhc-ccHHHHHHHHhHHHHHHHHHHhhHHHHHHHhccc
Q 013919 336 LPAG----IS-NNYWCFILLRTALVFSSVCAAFLL-PFFSLVMALIGSLLSILVAIIMPSLCFIKILGRK 399 (434)
Q Consensus 336 ~~~~----~~-~~~~~~~~~~~~~~~~~~~la~~~-p~~~~~~~l~G~~~~~~~~~ilP~l~~l~~~~~~ 399 (434)
+|+. .+ +...........+.....++.... +.++.+.++.+. ...+.|+++++.+++.++++
T Consensus 314 lP~~f~k~~~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~--~~li~y~~~~~~~~~l~~~~ 381 (468)
T TIGR03810 314 MPKYFGKENANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATS--AILVPYLWSAAYQVKLSWRG 381 (468)
T ss_pred ccHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhc
Confidence 3322 11 112222222222222222221111 356666666443 46689999999988886543
No 25
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.79 E-value=7.7e-16 Score=153.60 Aligned_cols=235 Identities=16% Similarity=0.180 Sum_probs=167.2
Q ss_pred CccCCCCCchHHHHHHHHHhhhccccchhH-HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhc
Q 013919 39 ELPIAHGCSFTQTIFNGINVMAGVGLLSTP-YTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAF 117 (434)
Q Consensus 39 ~~~~~~~~s~~~~~~~l~~~~iG~Gil~lP-~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~ 117 (434)
+.+.+|+.+.++..+..++++||+|++.+| .+.++.|..+++.+++.+++....+..+.|.+.+.|...+..+++++.+
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~~ 86 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPAALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDAI 86 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence 334677799999999999999999999999 5567888668888999999999999999999988999899999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHH
Q 013919 118 GKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATG 197 (434)
Q Consensus 118 G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~ 197 (434)
||+.++++.+..++.....+.......+++++.+++.. ..+...+..+++.-....++.+..++++...
T Consensus 87 g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~n~~gv~~~~~~~~~~ 155 (452)
T TIGR01773 87 GRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPDI-----------PLWLFSLILTIVLTLTNLYSVKSYGEFEFWF 155 (452)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC-----------cHHHHHHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 99999999998888777777777777777777665431 1122222222223333445666666666544
Q ss_pred HHHHHHHHHh----hhh--cccccccc---cC---C-CCc-cccccchhhHHHHHHHhccCccchhhHHhhccchh-hhH
Q 013919 198 VVATILIVLC----VLF--LGTIEGIG---FH---P-TGQ-VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFT 262 (434)
Q Consensus 198 ~~~~~~~~~~----~~~--~~~~~~~~---~~---~-~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~ 262 (434)
.+..+...+. .++ ....+..+ .. . ... +..+.++..++....|+|.|.+.+....+|+|||+ +.|
T Consensus 156 ~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iP 235 (452)
T TIGR01773 156 ALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSIT 235 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHH
Confidence 3332221111 111 11111100 00 0 111 12234578899999999999999999999999997 799
Q ss_pred HHHHHHHHHHHHHHHHHHhHHH
Q 013919 263 KALITCFALCVLIYGGVAVMGF 284 (434)
Q Consensus 263 ~~~~~s~~~~~~~Y~~~g~~gy 284 (434)
|++..+.....++|++......
T Consensus 236 rAi~~~~~~~~~~y~l~~~~~~ 257 (452)
T TIGR01773 236 RATNSVIWRIIVFYLGSIFIVV 257 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHe
Confidence 9999888888999988655444
No 26
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.78 E-value=6.1e-16 Score=155.05 Aligned_cols=238 Identities=14% Similarity=0.114 Sum_probs=165.1
Q ss_pred CCCCchHHHHHHHHHhhhccccchhHHHHHhhc-HH-HHHHHHHHHHHHHHHHHHHHHhhhhCCC-CCCHHHHHHHhccc
Q 013919 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAG-WA-SLVVLLLFAVVCCYTASLMRYCFESKEG-ITTYPDIGEAAFGK 119 (434)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~lP~a~~~~G-~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~y~~l~~~~~G~ 119 (434)
+|+.|.+++++..+++++|+|++.+|...++.| .. .++.+++.++.....+..+.|...+.|+ .....++.++.+||
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~G~ 85 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGFGP 85 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHccc
Confidence 567999999999999999999999998876555 33 4677888889899999999999998998 78888999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHHH
Q 013919 120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (434)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~ 199 (434)
+.++++.+.+.+.......++.....+++..+++....+ .........+...+..-....++.+..++++.....
T Consensus 86 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~-----~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~~~ 160 (473)
T TIGR00905 86 YIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSG-----NPVPSILGASVLLWVFTFLVLRGVRQAAFINTITTI 160 (473)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-----CcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 999999998877655556666666667777666532110 000111111222222333455677777777776655
Q ss_pred HHHHHHHhhhhccc--cccccc--C--CC-Cc--cccccchhhHHHHHHHhccCccchhhHHhhccchhhhHHHHHHHHH
Q 013919 200 ATILIVLCVLFLGT--IEGIGF--H--PT-GQ--VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFA 270 (434)
Q Consensus 200 ~~~~~~~~~~~~~~--~~~~~~--~--~~-~~--~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~s~~ 270 (434)
..+...+.++.... .+..+. + +. .+ ..++..+..++....|+|.|.+......+|+||+|+.||++..+..
T Consensus 161 ~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~iPrai~~~~~ 240 (473)
T TIGR00905 161 AKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNKSDVGKATVLGTL 240 (473)
T ss_pred HHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccchHHHHHHHH
Confidence 44332222221111 111111 1 11 01 1123456678888999999999999999999995589999999999
Q ss_pred HHHHHHHHHHhHHHH
Q 013919 271 LCVLIYGGVAVMGFL 285 (434)
Q Consensus 271 ~~~~~Y~~~g~~gy~ 285 (434)
++.++|++.......
T Consensus 241 i~~~~Yil~~~~~~~ 255 (473)
T TIGR00905 241 GALVIYILITLLSLG 255 (473)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999988766443
No 27
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.78 E-value=2.8e-16 Score=159.49 Aligned_cols=353 Identities=13% Similarity=0.076 Sum_probs=214.2
Q ss_pred cCCCCCchHHHHHHHHHhhhccccchhHHHH--HhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcc
Q 013919 41 PIAHGCSFTQTIFNGINVMAGVGLLSTPYTV--KEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG 118 (434)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP~a~--~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G 118 (434)
+.+|+.+.++.+...++.++|+|++.+|... ...|...++.+++.++.+...+..+.|.+.+.|...+...++++.+|
T Consensus 25 ~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~~G 104 (557)
T TIGR00906 25 KMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVTVG 104 (557)
T ss_pred chhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHHhC
Confidence 4678899999999999999999999999654 34676677788899999999999999999999988888888999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCC----CCCCCCC---cccCchhHHHHHHHHHHhhhhccccCchhh
Q 013919 119 KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPG----ASLDWPG---FQLDSTHLFGILTALIVLPTIWLRDLRVIS 191 (434)
Q Consensus 119 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~----~~~~~~~---~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~ 191 (434)
+..++++.+...+.......+.....++++..++.. +..+..+ ...........+..++++-+...++.+..+
T Consensus 105 ~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gik~s~ 184 (557)
T TIGR00906 105 ELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVKESA 184 (557)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhchhHHH
Confidence 999999999888777666666666666666655432 1111000 000011112222222333344557888888
Q ss_pred HhhHHHHHHHHHHHHhhhhcccc--cccccC-----CCCc--cccccchhhHHHHHHHhccCccchhhHHhhccchh-hh
Q 013919 192 YLSATGVVATILIVLCVLFLGTI--EGIGFH-----PTGQ--VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KF 261 (434)
Q Consensus 192 ~~s~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~--~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~ 261 (434)
+++.+.....+...+.++..+.. +..++. ...+ +.++.++..+....+|+|.|.+.+....+|.|||+ +.
T Consensus 185 ~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r~i 264 (557)
T TIGR00906 185 WVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQRAI 264 (557)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCccccc
Confidence 88877665544433333322221 111111 0111 12345678889999999999999999999999998 59
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhcCC---chhh---hhhcCCCchhHHHHHHHHHHHHHhhhhcchhcchHHHHH--
Q 013919 262 TKALITCFALCVLIYGGVAVMGFLMFGQG---TLSQ---ITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIE-- 333 (434)
Q Consensus 262 ~~~~~~s~~~~~~~Y~~~g~~gy~~fg~~---~~~~---il~~~~~~~~~~~v~~~~~~~~~~~s~pl~~~~~~~~~~-- 333 (434)
||++..++.++.++|+++.+.-....+.+ .++. ...... .++...+..+........+....++...|.+.
T Consensus 265 P~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g-~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~am 343 (557)
T TIGR00906 265 PIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVG-WGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAM 343 (557)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998876544332211 1111 111111 12222222233333333333333334444333
Q ss_pred ---hhcCCC--CCChhHH-HHHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHHHHHHhhHHHHHHHhc
Q 013919 334 ---ELLPAG--ISNNYWC-FILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILG 397 (434)
Q Consensus 334 ---~~~~~~--~~~~~~~-~~~~~~~~~~~~~~la~~~p~~~~~~~l~G~~~~~~~~~ilP~l~~l~~~~ 397 (434)
+.+|+. +.+++.. ......+..+++.+++.+. +++.+.++.. .+..+.|.++++..+.+|+
T Consensus 344 arDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~-~~~~l~~l~s--ig~ll~y~lv~~~~l~lR~ 410 (557)
T TIGR00906 344 ARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLF-DLKALVDLLS--IGTLLAYSLVAACVLILRY 410 (557)
T ss_pred HcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHc-CHHHHHHHHH--HHHHHHHHHHHHHHHHhhc
Confidence 234432 1111111 1111222223333444433 5666666543 3567899999888888764
No 28
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.78 E-value=1.7e-15 Score=151.84 Aligned_cols=237 Identities=12% Similarity=0.118 Sum_probs=158.0
Q ss_pred cCCCCCchHHHHHHHHHhhhccccchhHHH-HHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcc
Q 013919 41 PIAHGCSFTQTIFNGINVMAGVGLLSTPYT-VKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG 118 (434)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP~a-~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G 118 (434)
+.+|+.+.++.....++++||+|++..|.. .+.+|.. .++.+++.+++.......+.|.+.+.|....+..++++.+|
T Consensus 11 ~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~~g 90 (471)
T PRK11387 11 QFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARYLG 90 (471)
T ss_pred hhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcC
Confidence 356779999999999999999999998855 5777865 66788889999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHH
Q 013919 119 KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGV 198 (434)
Q Consensus 119 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~ 198 (434)
+..++++.+..++.....+.......+..+..+.+.. ....+.++. .+++-+...++.+..++++....
T Consensus 91 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~----------~~~~~~~~~-~~~~~~in~~gvk~~~~~~~~~~ 159 (471)
T PRK11387 91 PATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQV----------PVWPWCLLF-CALIFGLNVVSTRFFAEGEFWFS 159 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcC----------cHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999988887765555444444444444333211 111111112 22222334456666555543332
Q ss_pred HHHHHHHHhhhh------cc-c-c-cccc---cCC---CCc-cccccchhhHHHHHHHhccCccchhhHHhhccchh-hh
Q 013919 199 VATILIVLCVLF------LG-T-I-EGIG---FHP---TGQ-VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KF 261 (434)
Q Consensus 199 ~~~~~~~~~~~~------~~-~-~-~~~~---~~~---~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~ 261 (434)
...+...+..+. .. . . ++.. .++ ..+ .....++..++....|+|.|.+.+....+|+|||+ +.
T Consensus 160 ~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~i 239 (471)
T PRK11387 160 LIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAKVI 239 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHH
Confidence 222211111111 00 0 0 0000 000 000 01122466777889999999999999999999998 69
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhc
Q 013919 262 TKALITCFALCVLIYGGVAVMGFLMFG 288 (434)
Q Consensus 262 ~~~~~~s~~~~~~~Y~~~g~~gy~~fg 288 (434)
||++..+..++.++|+...+......+
T Consensus 240 PrAi~~~~~~~~~~y~~~~~~~~~~~p 266 (471)
T PRK11387 240 PVAIRTTIARLVIFFVGTVLVLAALIP 266 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 999999999999999988765444333
No 29
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.77 E-value=2.6e-15 Score=150.25 Aligned_cols=234 Identities=13% Similarity=0.175 Sum_probs=159.2
Q ss_pred cCCCCCchHHHHHHHHHhhhccccchhH-HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhccc
Q 013919 41 PIAHGCSFTQTIFNGINVMAGVGLLSTP-YTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK 119 (434)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP-~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~ 119 (434)
+.+|+.+.++.....++++||+|++..| .+++++|...++.+++.+++.......+.|.....+...++.+++++.+||
T Consensus 17 ~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~~g~ 96 (469)
T PRK11049 17 SLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLGP 96 (469)
T ss_pred hhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhCc
Confidence 4677899999999999999999999987 466777875667788888888888888999876666667788999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHHH
Q 013919 120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (434)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~ 199 (434)
..++++.+..++.......+.....+.++...++.. ....+ .+..+.++-+...++.+..++++.+...
T Consensus 97 ~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~----------~~~~~-~~~~~~~~~~iN~~g~~~~~~i~~~~~~ 165 (469)
T PRK11049 97 WAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDL----------SDWVA-SLAVVLLLLSLNLATVKMFGEMEFWFAM 165 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----------cHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999998887765455555566666665554321 11111 1122222233444566777776655444
Q ss_pred HHHHHHHhhhhccc------cccc-----cc----CCCCc-cccccchhhHHHHHHHhccCccchhhHHhhccchh-hhH
Q 013919 200 ATILIVLCVLFLGT------IEGI-----GF----HPTGQ-VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFT 262 (434)
Q Consensus 200 ~~~~~~~~~~~~~~------~~~~-----~~----~~~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~ 262 (434)
..+...+.++..+. .... .. +.... +..+.++..++....|+|.|.+.+....+|+|||+ +.|
T Consensus 166 ~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iP 245 (469)
T PRK11049 166 IKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLP 245 (469)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhHHH
Confidence 33322222111110 0000 01 00001 12234578899999999999999999999999998 699
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Q 013919 263 KALITCFALCVLIYGGVAVMGFL 285 (434)
Q Consensus 263 ~~~~~s~~~~~~~Y~~~g~~gy~ 285 (434)
|++..+.....++|.+.......
T Consensus 246 rai~~~~~~~~~~y~l~~~~~~~ 268 (469)
T PRK11049 246 RAINSIPIRIIMFYVFALIVIMS 268 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHee
Confidence 99987777888888876665443
No 30
>PRK10746 putative transport protein YifK; Provisional
Probab=99.77 E-value=3.6e-15 Score=148.62 Aligned_cols=345 Identities=14% Similarity=0.168 Sum_probs=204.7
Q ss_pred CCCCCchHHHHHHHHHhhhccccchhH-HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcccc
Q 013919 42 IAHGCSFTQTIFNGINVMAGVGLLSTP-YTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKY 120 (434)
Q Consensus 42 ~~~~~s~~~~~~~l~~~~iG~Gil~lP-~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~ 120 (434)
.+|+.+.++..+..++++||+|++..| .+.+.+|...++.+++.+++....+..+.|.+.+.|...++.+.+++.+||.
T Consensus 8 l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~~g~~ 87 (461)
T PRK10746 8 LQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSPF 87 (461)
T ss_pred HhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcH
Confidence 456799999999999999999999988 4557777766678888899999999999999998999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHHHH
Q 013919 121 GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVA 200 (434)
Q Consensus 121 ~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~ 200 (434)
.++.+.+..++.......+.....+.+++.+++... ...+..+. +..+-....++.+..+.+.......
T Consensus 88 ~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~~----------~~~~~~~~-~~~~~~lN~~gv~~~~~~e~~~~~~ 156 (461)
T PRK10746 88 FGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEMA----------QWIPALIA-VALVALANLAAVRLYGEIEFWFAMI 156 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc----------hHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999988887766667777777777766654311 11122222 2222223334555555544332221
Q ss_pred HHH----HHHhh---hhcccccc-c--ccCC---CC-c-cccccchhhHHHHHHHhccCccchhhHHhhccchh-hhHHH
Q 013919 201 TIL----IVLCV---LFLGTIEG-I--GFHP---TG-Q-VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKA 264 (434)
Q Consensus 201 ~~~----~~~~~---~~~~~~~~-~--~~~~---~~-~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~ 264 (434)
.+. .++.. .......+ . +.++ +. . ..++.++..++....|+|.|.+.+....+|+|||+ +.||+
T Consensus 157 ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~A 236 (461)
T PRK10746 157 KVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSA 236 (461)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHHH
Confidence 111 11111 11111111 0 0111 11 1 12345677899999999999999999999999997 69999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhcCCchh----hh---hhcCCCchhHHHHHHHHHHHHHhhhhcchhcchHHHHHhh--
Q 013919 265 LITCFALCVLIYGGVAVMGFLMFGQGTLS----QI---TLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEEL-- 335 (434)
Q Consensus 265 ~~~s~~~~~~~Y~~~g~~gy~~fg~~~~~----~i---l~~~~~~~~~~~v~~~~~~~~~~~s~pl~~~~~~~~~~~~-- 335 (434)
+..+.....++|+............+..+ +. ..+... .....+......+..+.+.--..+...|.+..+
T Consensus 237 i~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~-~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~ 315 (461)
T PRK10746 237 VGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGI-TAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAK 315 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999988999988654443333322111 11 111111 111122233333333433333334444444332
Q ss_pred ---cCCC----CC-ChhHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHhHH--HHHHHHHHhhHHHHHHHhcc
Q 013919 336 ---LPAG----IS-NNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSL--LSILVAIIMPSLCFIKILGR 398 (434)
Q Consensus 336 ---~~~~----~~-~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~l~G~~--~~~~~~~ilP~l~~l~~~~~ 398 (434)
+|+. ++ ...........+...+...+....|+-+.+.+...++ .+..+.|+++++.|++.|++
T Consensus 316 ~g~lP~~~~~~~~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~ 388 (461)
T PRK10746 316 NRQLPAAMAKVSRHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRA 388 (461)
T ss_pred CCCcCHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3321 11 1122223233222233333444455444444433322 23568888999999998754
No 31
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.76 E-value=7.5e-16 Score=149.10 Aligned_cols=332 Identities=16% Similarity=0.216 Sum_probs=219.5
Q ss_pred CCchHHHHHHHHHhhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcccchhh
Q 013919 45 GCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRL 123 (434)
Q Consensus 45 ~~s~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~ 123 (434)
+.|.+|..+.++++++|+|++.+|...++.+.. +++..++.++........+.+..+++|+. +..|+.++.+||+.++
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~-~~~~~~~~~~Gk~~g~ 80 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEK-NFSEILSKYLGKILGR 80 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhhHHHHH
Confidence 478999999999999999999999988776666 88888999999999999999999888875 8999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHHHHHHH
Q 013919 124 LISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATIL 203 (434)
Q Consensus 124 ~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~~ 203 (434)
+..+....+............++.++..+... .......+..++..-....++.+...+++.+.....+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~ 150 (359)
T TIGR00912 81 LLSILFILYFFLIAAYLIRIFADFIKTYLLPR----------TPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFLI 150 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----------CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 99988887777776666777777776543210 11122222333333334456888888888776654443
Q ss_pred HH-HhhhhcccccccccCCCCc--cccccchhhHHH-HHHHhccCccchhhHHhhccchhhhHHHHHHHHHHHHHHHHHH
Q 013919 204 IV-LCVLFLGTIEGIGFHPTGQ--VVKWSGMPFAIG-IYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGV 279 (434)
Q Consensus 204 ~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~s~~~~~~~Y~~~ 279 (434)
.. +.+.... .+..+.+.-.| ..++.+...+.- ...++|.+.+.+....+++|||+|.+|+...+..++.++|..+
T Consensus 151 ~~~~il~~~~-~~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~k~~~~~~~~~~~ly~~~ 229 (359)
T TIGR00912 151 LFILVLILLA-PKLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKKSIIKAIIIGVLLYILT 229 (359)
T ss_pred HHHHHHHHHh-cccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHHH
Confidence 31 2222211 12112221111 234556565554 7889999999999999999999999999999999999999999
Q ss_pred HhHHHHhhcCCchhhhh-------hcCCCchh---HHHHHHHHHHHHHhhhhcchhcchHHHHHhhcCCCCCChhHHHHH
Q 013919 280 AVMGFLMFGQGTLSQIT-------LNMPPHAF---ASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFIL 349 (434)
Q Consensus 280 g~~gy~~fg~~~~~~il-------~~~~~~~~---~~~v~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (434)
.+.....+|.+..++.. ....-++. ...+.........+.......+...+.+.+.++.++.+. ..
T Consensus 230 ~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 305 (359)
T TIGR00912 230 TFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKRKYSI----LI 305 (359)
T ss_pred HHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcch----hH
Confidence 99888888854433211 11111122 222223344556667777777888888888876553221 11
Q ss_pred HHHHHHHHHHHHHhhccc-HHH---HHHHHhHHHHHHHHHHhhHHHHHHHh
Q 013919 350 LRTALVFSSVCAAFLLPF-FSL---VMALIGSLLSILVAIIMPSLCFIKIL 396 (434)
Q Consensus 350 ~~~~~~~~~~~la~~~p~-~~~---~~~l~G~~~~~~~~~ilP~l~~l~~~ 396 (434)
.-... ..+.++. .|| ... ..+..+ ..+....+++|.++.+...
T Consensus 306 ~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~P~ll~~i~~ 352 (359)
T TIGR00912 306 LPVLM--VIFSISF-FPDSSNQLFDYLEFLP-IIAIVFFLLLPLILFIIVK 352 (359)
T ss_pred HHHHH--HHHHHHH-ccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 11111 2333333 353 322 222223 2345577789998877765
No 32
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.76 E-value=2e-15 Score=160.17 Aligned_cols=240 Identities=15% Similarity=0.113 Sum_probs=169.3
Q ss_pred CCCCCchHHHHHHH-HHhhhccccchh-HHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhh-CCCCCCHHHHHHHhc
Q 013919 42 IAHGCSFTQTIFNG-INVMAGVGLLST-PYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFES-KEGITTYPDIGEAAF 117 (434)
Q Consensus 42 ~~~~~s~~~~~~~l-~~~~iG~Gil~l-P~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~-~~~~~~y~~l~~~~~ 117 (434)
..++.|++++++.- +.+++|+|++-- ++...++|.. +++.+++.++++..++..+.+.+.+ .++...-..+.++.+
T Consensus 74 ~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisral 153 (953)
T TIGR00930 74 GAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISRSL 153 (953)
T ss_pred CCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 45679999999998 999999999875 5777899987 8899999999999999999999886 677677778899999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHH
Q 013919 118 GKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATG 197 (434)
Q Consensus 118 G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~ 197 (434)
|+..+..+.+..++.....+..|.+.+++++..+++................+..++ ++++-+....+.+...+++.+.
T Consensus 154 Gp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~-l~ll~~In~~Gvk~~ak~q~vl 232 (953)
T TIGR00930 154 GPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVT-VVVLLGISFAGMEWENKAQVLF 232 (953)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHH-HHHHHHHHHhhHHHHHHHHHHH
Confidence 999889999888888888889999999999988875321100000011112222222 2222223344677777777665
Q ss_pred HHHHHHHHHhhhhcccccccc--------cC-------CCCccccc-cchhhHHHHHHHhccCccchhhHHhhccchh-h
Q 013919 198 VVATILIVLCVLFLGTIEGIG--------FH-------PTGQVVKW-SGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-K 260 (434)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~--------~~-------~~~~~~~~-~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~ 260 (434)
++..++.++.+++.+.....+ .+ ..+...+. ..++..++++++||.|......+..|+|||+ +
T Consensus 233 ~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgElKnP~r~ 312 (953)
T TIGR00930 233 LVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDLKDPQKA 312 (953)
T ss_pred HHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhccChhhh
Confidence 554443333333222111100 00 00011111 2377888888999999999999999999997 6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhH
Q 013919 261 FTKALITCFALCVLIYGGVAVM 282 (434)
Q Consensus 261 ~~~~~~~s~~~~~~~Y~~~g~~ 282 (434)
+||++..++.+++++|+++.+.
T Consensus 313 IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 313 IPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998754
No 33
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.75 E-value=1.4e-14 Score=144.63 Aligned_cols=233 Identities=14% Similarity=0.210 Sum_probs=161.1
Q ss_pred ccCCCCCchHHHHHHHHHhhhccccchhHHH-HHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcc
Q 013919 40 LPIAHGCSFTQTIFNGINVMAGVGLLSTPYT-VKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG 118 (434)
Q Consensus 40 ~~~~~~~s~~~~~~~l~~~~iG~Gil~lP~a-~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G 118 (434)
.+.+|+.+.++.....+++++|+|++.+|.. .+.+|...++.+++.++.....+..+.|...+.|...+..+++++.+|
T Consensus 5 ~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~~G 84 (457)
T PRK10580 5 NKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQENLG 84 (457)
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHcC
Confidence 3456779999999999999999999999865 566676588888999999999999999999999998999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHH
Q 013919 119 KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGV 198 (434)
Q Consensus 119 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~ 198 (434)
|..++++.+...+.............+.+...+++... ...+.+ ..+++.-....++.+...+++....
T Consensus 85 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~-~~~~l~~~ln~~gv~~~~~~~~~~~ 153 (457)
T PRK10580 85 PLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVP----------HWIWVL-SVVLIICAVNLMSVKVFGELEFWFS 153 (457)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----------hHHHHH-HHHHHHHHHHHccchhHHHHHHHHH
Confidence 99999999988777655555555566666665544211 112222 2222333344456666666664433
Q ss_pred HHHHHHHHhh-------hhccccc-ccc------cCCCCc-cccccchhhHHHHHHHhccCccchhhHHhhccchh-hhH
Q 013919 199 VATILIVLCV-------LFLGTIE-GIG------FHPTGQ-VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFT 262 (434)
Q Consensus 199 ~~~~~~~~~~-------~~~~~~~-~~~------~~~~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~ 262 (434)
...+..++.. ....... +.+ +++... ...+.++..++....|+|.|.+.+....+|+|||+ +.|
T Consensus 154 ~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iP 233 (457)
T PRK10580 154 FFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIP 233 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHH
Confidence 3222211111 1111111 111 111111 12234567788899999999999999999999998 599
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q 013919 263 KALITCFALCVLIYGGVAVMG 283 (434)
Q Consensus 263 ~~~~~s~~~~~~~Y~~~g~~g 283 (434)
|++..+.....++|+......
T Consensus 234 rAi~~~~~~~~~~y~~~~~~~ 254 (457)
T PRK10580 234 RAINSVPMRILVFYVGTLFVI 254 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999988888888888775443
No 34
>PRK10836 lysine transporter; Provisional
Probab=99.75 E-value=1.2e-14 Score=146.20 Aligned_cols=236 Identities=13% Similarity=0.120 Sum_probs=152.7
Q ss_pred cCCCCCchHHHHHHHHHhhhccccchhHH-HHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcc
Q 013919 41 PIAHGCSFTQTIFNGINVMAGVGLLSTPY-TVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG 118 (434)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP~-a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G 118 (434)
+.+|+.+.++..+..++++||+|++.+|. +.+++|.. .++.+++.++++...+..+.|.+.+.|.......++++.+|
T Consensus 12 ~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~~~~g 91 (489)
T PRK10836 12 GLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVE 91 (489)
T ss_pred cccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHcC
Confidence 45677999999999999999999999995 56788876 68899999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHH
Q 013919 119 KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGV 198 (434)
Q Consensus 119 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~ 198 (434)
+..++++.+..++................+....+.. + ...+.. ..++++-....++.+..+.++....
T Consensus 92 ~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~~----~------~~~~~~-~~~~~~~~lN~~gv~~~~~~~~~~~ 160 (489)
T PRK10836 92 EGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDT----P------GWIWSA-LFLGVIFLLNYISVRGFGEAEYWFS 160 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC----c------hHHHHH-HHHHHHHHHHHHcchhhhhhHHHHH
Confidence 9998998887776543333322222222233332211 1 111111 2222222333345555544443322
Q ss_pred HHHHHHH---Hh--hh-hcccc-ccc-----ccCCC-Cc-cccccchhhHHHHHHHhccCccchhhHHhhccchh-hhHH
Q 013919 199 VATILIV---LC--VL-FLGTI-EGI-----GFHPT-GQ-VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTK 263 (434)
Q Consensus 199 ~~~~~~~---~~--~~-~~~~~-~~~-----~~~~~-~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~ 263 (434)
+..+... +. ++ ..+.. .+. +++.. .+ ...+..+..+.....|+|.|.+.+....+|+|||+ +.||
T Consensus 161 ~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPr 240 (489)
T PRK10836 161 LIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPR 240 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHHH
Confidence 2221111 11 11 11111 111 11100 01 11233344455567799999999999999999997 6999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhh
Q 013919 264 ALITCFALCVLIYGGVAVMGFLMF 287 (434)
Q Consensus 264 ~~~~s~~~~~~~Y~~~g~~gy~~f 287 (434)
++..++..+.++|++.........
T Consensus 241 Ai~~~~~~v~~~Yvl~~~~~~~~v 264 (489)
T PRK10836 241 AVRQVFWRILLFYVFAILIISLII 264 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHheec
Confidence 999999999999998876544443
No 35
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.75 E-value=5.3e-15 Score=147.40 Aligned_cols=344 Identities=13% Similarity=0.167 Sum_probs=204.8
Q ss_pred cCCCCCchHHHHHHHHHhhhccccchhHHHH-HhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhccc
Q 013919 41 PIAHGCSFTQTIFNGINVMAGVGLLSTPYTV-KEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK 119 (434)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP~a~-~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~ 119 (434)
+.+|+.+.++..+..++++||+|++..|... +++|...++.+++.++.....+..+.|.+.+.|...++.+.+++.+||
T Consensus 9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~~g~ 88 (456)
T PRK10238 9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGS 88 (456)
T ss_pred hhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCc
Confidence 4567899999999999999999999999655 566654667888999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHHH
Q 013919 120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (434)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~ 199 (434)
..++++.+...+.....+.+.....+++++...++. ....+.. ....+.-....++.+..+.++.....
T Consensus 89 ~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~----------~~~~~~~-i~~~~~~~lN~~gv~~~~~~~~~~~~ 157 (456)
T PRK10238 89 FAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEI----------PTWVSAA-VFFVVINAINLTNVKVFGEMEFWFAI 157 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC----------cHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999988887777777777888877665421 1111222 22222222333455666666654433
Q ss_pred HHHHHHHhh-----hh-ccccccc--cc----CCCCc-cccccchhhHHHHHHHhccCccchhhHHhhccchh-hhHHHH
Q 013919 200 ATILIVLCV-----LF-LGTIEGI--GF----HPTGQ-VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKAL 265 (434)
Q Consensus 200 ~~~~~~~~~-----~~-~~~~~~~--~~----~~~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~ 265 (434)
..+..++.+ .. ....... .. +.... +..+.++..+++...|+|.|.+.+....+|+|||+ +.||++
T Consensus 158 iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPrAi 237 (456)
T PRK10238 158 IKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKAT 237 (456)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHHHH
Confidence 333222111 11 1100111 01 10111 11233556778889999999999999999999997 699999
Q ss_pred HHHHHHHHHHHHHHHhHHHHh--hcCC--chhh---hhhcCCCchhHHHHHHHHHHHHHhhhhcchhcchHHHHHh----
Q 013919 266 ITCFALCVLIYGGVAVMGFLM--FGQG--TLSQ---ITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEE---- 334 (434)
Q Consensus 266 ~~s~~~~~~~Y~~~g~~gy~~--fg~~--~~~~---il~~~~~~~~~~~v~~~~~~~~~~~s~pl~~~~~~~~~~~---- 334 (434)
..+.....+.|+......... ..+- ..++ +..+... .....+......+..+.+..-..+...|.+..
T Consensus 238 ~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~-~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ard 316 (456)
T PRK10238 238 NQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGD-TFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQ 316 (456)
T ss_pred HHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 988888888887653332211 1110 0111 1111111 12222222333333333333333344443322
Q ss_pred -hcCCC-----CCChhHHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHhHHHHHHHHHHhhHHHHHHHhcc
Q 013919 335 -LLPAG-----ISNNYWCFILLRTALVFSSVCAAFLLP--FFSLVMALIGSLLSILVAIIMPSLCFIKILGR 398 (434)
Q Consensus 335 -~~~~~-----~~~~~~~~~~~~~~~~~~~~~la~~~p--~~~~~~~l~G~~~~~~~~~ilP~l~~l~~~~~ 398 (434)
.+|+. +++......+....+..+..++..+.| .++.+.++.+ .+..+.|.+|.+.+++.||+
T Consensus 317 g~lP~~f~kv~~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~--~~~~i~y~~~~~~~l~~r~~ 386 (456)
T PRK10238 317 GNAPKALASVDKRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVV--SALVINWAMISLAHMKFRRA 386 (456)
T ss_pred CCccHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 23321 111222223333333333333322334 4666666633 35668999999999998753
No 36
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.75 E-value=1.8e-15 Score=152.90 Aligned_cols=244 Identities=11% Similarity=0.124 Sum_probs=162.1
Q ss_pred CCccCCCCCchHHHHHHHHHhhhccccchhHHH-HHhhcHHH--HHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHH
Q 013919 38 GELPIAHGCSFTQTIFNGINVMAGVGLLSTPYT-VKEAGWAS--LVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGE 114 (434)
Q Consensus 38 ~~~~~~~~~s~~~~~~~l~~~~iG~Gil~lP~a-~~~~G~~g--~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~ 114 (434)
++.+.+|+.+.++.+...+++++|+|++..|.. ..++|..| ++.+++.++.....+..+.|.+.+.|+........+
T Consensus 36 ~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~~ 115 (501)
T TIGR00911 36 EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYIL 115 (501)
T ss_pred cccccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhHH
Confidence 334567889999999999999999999999865 46667544 356678888888899999999998998888889999
Q ss_pred HhcccchhhHHHHHHHH-HHHHHHHHHHHHhhhhhhh-hcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhH
Q 013919 115 AAFGKYGRLLISVLLYT-ELYSYCVEFIILEGDNLTS-LFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISY 192 (434)
Q Consensus 115 ~~~G~~~~~~~~~~~~~-~~~g~~~~y~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~ 192 (434)
+.+||..+++..+.... ...+.+..+....++++.+ +.+....+ .+ ......+..+.+.-....++.+...+
T Consensus 116 ~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~--~~----~~~~i~~~~i~~~~~ln~~Gvk~~~~ 189 (501)
T TIGR00911 116 EVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVP--EW----AIRLVAVLCVLLLTLVNCLSVKWATR 189 (501)
T ss_pred hHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--hH----HHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999988888775543 2223444555556666433 33322110 00 11112222222333344557777777
Q ss_pred hhHHHHHHHHHHHHhhhhcc---ccccc--ccCCCCc----cccccchhhHHHHHHHhccCccchhhHHhhccchh-hhH
Q 013919 193 LSATGVVATILIVLCVLFLG---TIEGI--GFHPTGQ----VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFT 262 (434)
Q Consensus 193 ~s~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~----~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~ 262 (434)
++.......+...+..+..+ ...+. ..+.... ..+..++..++....|+|.|.+.+..+.+|+|||+ +.|
T Consensus 190 ~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iP 269 (501)
T TIGR00911 190 VQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLP 269 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhH
Confidence 77666554443322222111 11111 1111111 12244677788999999999999999999999997 699
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhh
Q 013919 263 KALITCFALCVLIYGGVAVMGFLMF 287 (434)
Q Consensus 263 ~~~~~s~~~~~~~Y~~~g~~gy~~f 287 (434)
|++..+..++.++|++..+......
T Consensus 270 rAi~~s~~~v~~~Y~l~~~a~~~~~ 294 (501)
T TIGR00911 270 IAIIISMPIVTFIYVLTNIAYFTVL 294 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999866554433
No 37
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.74 E-value=5e-15 Score=147.39 Aligned_cols=231 Identities=14% Similarity=0.107 Sum_probs=161.0
Q ss_pred cCCCCCchHHHHHHHHHhhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhccc
Q 013919 41 PIAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK 119 (434)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~ 119 (434)
+.+|+.|.++.+...++.++|+...+.+.+++..|+. -.+..++.++.....+..+.|.+.+.|+......++++.+||
T Consensus 4 ~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~~~G~ 83 (442)
T TIGR00908 4 QLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARRAFGP 83 (442)
T ss_pred hhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCc
Confidence 3567799999999999999995555668888999998 456667777888888889999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHHH
Q 013919 120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (434)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~ 199 (434)
+.++++.+...+........+....++++..+++... .... .+....++-+...++.+..++++....+
T Consensus 84 ~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~~----------~~~~-~~~~~~~~~~ln~~g~~~~~~i~~~~~~ 152 (442)
T TIGR00908 84 WGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVGP----------GWLA-ALVFYIVFIGINILGVGEAAKLEFVVTA 152 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----------hhHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999988887777777888888888887765321 1111 1122222223344566666666654433
Q ss_pred HHHHHHHhhhhcccc--ccccc-CC----CCc--cccccchhhHHHHHHHhccCccchhhHHhhccchh-hhHHHHHHHH
Q 013919 200 ATILIVLCVLFLGTI--EGIGF-HP----TGQ--VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCF 269 (434)
Q Consensus 200 ~~~~~~~~~~~~~~~--~~~~~-~~----~~~--~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~s~ 269 (434)
..+............ +..+. +. ... ...+.++..++....|+|.|++.+....+|+|||+ +.||++..+.
T Consensus 153 ~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s~ 232 (442)
T TIGR00908 153 VAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGAI 232 (442)
T ss_pred HHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHH
Confidence 322222111111110 00000 00 000 11223566788888999999999999999999997 6999999999
Q ss_pred HHHHHHHHHHHhH
Q 013919 270 ALCVLIYGGVAVM 282 (434)
Q Consensus 270 ~~~~~~Y~~~g~~ 282 (434)
.++.++|+.+...
T Consensus 233 ~~~~~~~~~~~~~ 245 (442)
T TIGR00908 233 LTLLALAAGILVV 245 (442)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988876443
No 38
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.73 E-value=2.8e-15 Score=141.63 Aligned_cols=348 Identities=17% Similarity=0.224 Sum_probs=231.6
Q ss_pred CCccCCCCCchHHHHHHHHHhhhccccc-hhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHh
Q 013919 38 GELPIAHGCSFTQTIFNGINVMAGVGLL-STPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAA 116 (434)
Q Consensus 38 ~~~~~~~~~s~~~~~~~l~~~~iG~Gil-~lP~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~ 116 (434)
++.+.+|+.+.++--+.-++..||+|.+ +-..+.+.+|..-++..++.|++.+.-++.+.|...+.|..+++.+++++.
T Consensus 7 ~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~ 86 (462)
T COG1113 7 EEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKY 86 (462)
T ss_pred cchhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHH
Confidence 4445678899999999999999999954 466788999988888889999999999999999999899999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhh--hhccccCchhhHh-
Q 013919 117 FGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLP--TIWLRDLRVISYL- 193 (434)
Q Consensus 117 ~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~p--l~~~~~~~~l~~~- 193 (434)
+|++.+++..+.++......+.+-....+.+++..+++.+ ...+.+...++... +...|...++-++
T Consensus 87 lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~vP----------~Wv~al~~~~l~~~~NL~sVk~FGE~EfWf 156 (462)
T COG1113 87 LGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDVP----------QWVFALAAVVLLLAVNLISVKVFGELEFWF 156 (462)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998752 12222222222222 2333444444332
Q ss_pred hHHHHHHHHHHHHhhhh--cccccccc----cCC----CC-ccccccchhhHHHHHHHhccCccchhhHHhhccchh-hh
Q 013919 194 SATGVVATILIVLCVLF--LGTIEGIG----FHP----TG-QVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KF 261 (434)
Q Consensus 194 s~~~~~~~~~~~~~~~~--~~~~~~~~----~~~----~~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~ 261 (434)
+.+-+.+++..++...+ .+..+..+ .+. .. -+..+.+++.++...+|||.|.+.+--..+|-|||+ ..
T Consensus 157 AlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~i 236 (462)
T COG1113 157 ALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAI 236 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHH
Confidence 22222222222221111 11111111 111 11 123467888999999999999999999999999998 47
Q ss_pred HHHHHHHHHHHHHHH-----HHHHhHHHHhhcCCchhhhhhc-CCCchhHHHHHHHHHHHHHhhhhcchhcchHHHHHhh
Q 013919 262 TKALITCFALCVLIY-----GGVAVMGFLMFGQGTLSQITLN-MPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEEL 335 (434)
Q Consensus 262 ~~~~~~s~~~~~~~Y-----~~~g~~gy~~fg~~~~~~il~~-~~~~~~~~~v~~~~~~~~~~~s~pl~~~~~~~~~~~~ 335 (434)
+|++.--..=..++| +++.+..+-.++++.++.+..- .-.-+....+.++......+.+.--..+...|.+..+
T Consensus 237 pkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~l 316 (462)
T COG1113 237 PKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSL 316 (462)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhcccccccccchHHHHH
Confidence 787665554444444 4556666666665444443311 1111122233334444455555556666777766665
Q ss_pred cCCC----------CCChhHHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHhHHHHHHHHHHhhHHHHHHHhc
Q 013919 336 LPAG----------ISNNYWCFILLRTALVFSSVCAAFLLP--FFSLVMALIGSLLSILVAIIMPSLCFIKILG 397 (434)
Q Consensus 336 ~~~~----------~~~~~~~~~~~~~~~~~~~~~la~~~p--~~~~~~~l~G~~~~~~~~~ilP~l~~l~~~~ 397 (434)
-.+. ++.-.+...+...+...++.++....| -|..+.+..+.. ....+.+=.+.|+|.||
T Consensus 317 a~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~--~l~vW~~I~~s~l~~rk 388 (462)
T COG1113 317 AKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLG--LLFVWLMILLSQLKLRK 388 (462)
T ss_pred hhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh
Confidence 3221 111234556778888888999999999 466666664443 55566677788888877
No 39
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.71 E-value=1.1e-14 Score=145.02 Aligned_cols=235 Identities=14% Similarity=0.089 Sum_probs=158.7
Q ss_pred cCCCCCchHHHHHHHHHhhhccccchhHHHH-HhhcHH--HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhc
Q 013919 41 PIAHGCSFTQTIFNGINVMAGVGLLSTPYTV-KEAGWA--SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAF 117 (434)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP~a~-~~~G~~--g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~ 117 (434)
+.+|+.|.++.+...++.++|+|++..|... +..|.. .++.+++.+++....+..+.|...+.|+........++.+
T Consensus 5 ~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~~~~ 84 (445)
T PRK11357 5 ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNAG 84 (445)
T ss_pred cccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHHHhc
Confidence 3567799999999999999999999999764 456643 5667788889999999999999988888877778899999
Q ss_pred ccchhhHHHHHHH-HHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHH
Q 013919 118 GKYGRLLISVLLY-TELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSAT 196 (434)
Q Consensus 118 G~~~~~~~~~~~~-~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~ 196 (434)
||..++++.+... .........+....++++....+. .. .......+..+..+-....++.+...+++..
T Consensus 85 g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~-----~~----~~~~~~~~~~~~~~~~ln~~gv~~~~~v~~~ 155 (445)
T PRK11357 85 SRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPI-----DP----LLGKFIAAGLIIAFMLLHLRSVEGGAAFQTL 155 (445)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----ch----HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9998888888644 333334455666667776554321 00 0011112222222333445677777777666
Q ss_pred HHHHHHHHHHhhhhcc--cccccccCCCC-----ccccccchhhHHHHHHHhccCccchhhHHhhccchh-hhHHHHHHH
Q 013919 197 GVVATILIVLCVLFLG--TIEGIGFHPTG-----QVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITC 268 (434)
Q Consensus 197 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~-----~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~s 268 (434)
..+..+...+.++..+ ...+.+++... ...++.++..++....|+|.|.+......+|+|||+ +.||++..+
T Consensus 156 ~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai~~~ 235 (445)
T PRK11357 156 ITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIGS 235 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchHHHHHH
Confidence 5544433222221111 11111111110 111234566788899999999999999999999997 689999999
Q ss_pred HHHHHHHHHHHHhHHH
Q 013919 269 FALCVLIYGGVAVMGF 284 (434)
Q Consensus 269 ~~~~~~~Y~~~g~~gy 284 (434)
+.++.++|++......
T Consensus 236 ~~i~~~~Y~l~~~~~~ 251 (445)
T PRK11357 236 CLLVLVLYTLLALVIS 251 (445)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998766543
No 40
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.71 E-value=3.3e-14 Score=141.08 Aligned_cols=237 Identities=14% Similarity=0.179 Sum_probs=167.5
Q ss_pred CchHHHHHHHHHhhhccccchhHHHHHhhcHHHHHHHHHHHHHH-HHHHHHHHHhhhhCCCCCCHHHHHHHhcccchhhH
Q 013919 46 CSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVC-CYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLL 124 (434)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~g~~~l~~~~~~~-~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~ 124 (434)
.|+++++...++.++|+|++..| ..++.|...++..++.+.+. ...+..+.|.+++.|+.....+..++.+||+.+++
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~ 79 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAASAGPSAILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWGFI 79 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTCTGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccchhc
Confidence 47899999999999999999999 77777766666666666666 78888999998889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHHHHHH-H
Q 013919 125 ISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATI-L 203 (434)
Q Consensus 125 ~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~-~ 203 (434)
..+...........++.....+++...+.... .++ ........+..++.......++.|..++++.......+ .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~ 154 (426)
T PF13520_consen 80 VGWLYWVAYILSLASVASSFASYLLSLFGPDL---NPS--PWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIVI 154 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGG---TCS--HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred ccceeEEEeeccccccccchhhhhhhcccccc---ccc--cchheeeeecccccceEeeechhhhhhhhhhhhhhhhhhh
Confidence 99999888888888888888888877764210 000 01112222233333334455677777777766665554 2
Q ss_pred HHHhhhhcc----ccccccc----CCCCccccccchhhHHHHHHHhccCccchhhHHhhccchhhhHHHHHHHHHHHHHH
Q 013919 204 IVLCVLFLG----TIEGIGF----HPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLI 275 (434)
Q Consensus 204 ~~~~~~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~s~~~~~~~ 275 (434)
..+.++..+ ..+..+. ..+.....+..+..++....|+|.|.+....+.+|+|| |+.+|++..+..++.++
T Consensus 155 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip~ai~~~~~~~~i~ 233 (426)
T PF13520_consen 155 PLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIPRAIIISIIIVAII 233 (426)
T ss_dssp HHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHHHHHHHHHHHHHHH
T ss_pred hhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc-hhheeecccchhHHHHH
Confidence 222222111 1111110 01111223445788999999999999999999999998 89999999999999999
Q ss_pred HHHHHhHHHHhhcC
Q 013919 276 YGGVAVMGFLMFGQ 289 (434)
Q Consensus 276 Y~~~g~~gy~~fg~ 289 (434)
|.+.........++
T Consensus 234 y~l~~~~~~~~~~~ 247 (426)
T PF13520_consen 234 YILFSIALLGALPD 247 (426)
T ss_dssp HHHHHHHHHTTSTH
T ss_pred Hhhhhheeeecccc
Confidence 99987776666544
No 41
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.71 E-value=9.3e-14 Score=139.74 Aligned_cols=228 Identities=10% Similarity=0.060 Sum_probs=158.8
Q ss_pred CCCchHHHHHHHHHhhhccccchhH-HHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCC-CCCCHHHHHHHhcccc
Q 013919 44 HGCSFTQTIFNGINVMAGVGLLSTP-YTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKE-GITTYPDIGEAAFGKY 120 (434)
Q Consensus 44 ~~~s~~~~~~~l~~~~iG~Gil~lP-~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~-~~~~y~~l~~~~~G~~ 120 (434)
|+.+.++.....++.+||+|++..| .+.+..|.. .++.+++.+++....+..+.|.+.+.| ....|.+++++.+|+.
T Consensus 2 r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~~ 81 (478)
T TIGR00913 2 KSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDPA 81 (478)
T ss_pred CCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCcH
Confidence 5689999999999999999999987 556777766 467788899999999999999999898 4558999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHHHH
Q 013919 121 GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVA 200 (434)
Q Consensus 121 ~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~ 200 (434)
.++++.+.+.+.............+..+....+... ...+.. ...++.-+...++.+..++++......
T Consensus 82 ~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~-~~~~~~~~in~~gv~~~~~~~~~~~~~ 150 (478)
T TIGR00913 82 FGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKVN----------PAVWIA-IFYVFIVIINLFGVKGYGEAEFWFSSI 150 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC----------HHHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999998887777777777777777665433110 111222 122222234556777777766544322
Q ss_pred HHHHHH---h-hhhc--ccccccc------cCCCCcc------ccccchhhHHHHHHHhccCccchhhHHhhccchh-hh
Q 013919 201 TILIVL---C-VLFL--GTIEGIG------FHPTGQV------VKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KF 261 (434)
Q Consensus 201 ~~~~~~---~-~~~~--~~~~~~~------~~~~~~~------~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~ 261 (434)
.+...+ + .+.. ......+ +.....+ ..+.++..++....|+|.|.+......+|+|||+ +.
T Consensus 151 ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~i 230 (478)
T TIGR00913 151 KILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRKSI 230 (478)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhHH
Confidence 222111 1 1111 1000000 0000001 0134567788889999999999999999999997 69
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 013919 262 TKALITCFALCVLIYGGVAVM 282 (434)
Q Consensus 262 ~~~~~~s~~~~~~~Y~~~g~~ 282 (434)
||++..+..++.++|++..+.
T Consensus 231 Prai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 231 PRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987543
No 42
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.70 E-value=8.5e-14 Score=138.40 Aligned_cols=329 Identities=14% Similarity=0.167 Sum_probs=196.7
Q ss_pred HHHhhhccccchhHH-HHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcccchhhHHHHHHHHHH
Q 013919 55 GINVMAGVGLLSTPY-TVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLYTEL 133 (434)
Q Consensus 55 l~~~~iG~Gil~lP~-a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~ 133 (434)
.++++||+|++..|. +.++.|...++.+++.+++....+..+.|...+.|...+..+++++.+||+.++.+.+...+..
T Consensus 3 ~ig~~IGsGif~~~g~~~~~aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~~ 82 (446)
T PRK10197 3 SIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFW 82 (446)
T ss_pred eecchhHhHHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 467899999999985 6788887688899999999999999999999999999999999999999999999999888766
Q ss_pred HHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHHHHHHHHHHhhhhccc
Q 013919 134 YSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGT 213 (434)
Q Consensus 134 ~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~~~~~ 213 (434)
...........+..+....+.. ......+..++.+-+...++.+..+.++....+..+...+..+..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~~~ 151 (446)
T PRK10197 83 VLVIPLEANIAAMILHSWVPGI-----------PIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLGA 151 (446)
T ss_pred HHHHHHHHHHHHHHHHhccccC-----------cHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554555444432211 11122222222233334456666666665554433332222211110
Q ss_pred --ccc----cc-------cCCCC-ccccccchhhHHHHHHHhccCccchhhHHhhccchh-hhHHHHHHHHHHHHHHHHH
Q 013919 214 --IEG----IG-------FHPTG-QVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFALCVLIYGG 278 (434)
Q Consensus 214 --~~~----~~-------~~~~~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~s~~~~~~~Y~~ 278 (434)
..+ .+ ++... .+..+.++..++....|+|.|.+.+....+|+|||+ +.||++..+...+.++|++
T Consensus 152 ~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Yil 231 (446)
T PRK10197 152 VAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLC 231 (446)
T ss_pred HHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHH
Confidence 010 00 00000 012345788899999999999999999999999998 5999999999999999998
Q ss_pred HHhHHHHhhcCCchh--------hhhhcCCCchhHHHHHHHHHHHHHhhhhcchhcchHHHHHh-----hcCCC----C-
Q 013919 279 VAVMGFLMFGQGTLS--------QITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEE-----LLPAG----I- 340 (434)
Q Consensus 279 ~g~~gy~~fg~~~~~--------~il~~~~~~~~~~~v~~~~~~~~~~~s~pl~~~~~~~~~~~-----~~~~~----~- 340 (434)
..+........+..+ ....... ......+.....++..+.+..-..+...|.+.. .+|+. +
T Consensus 232 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g-~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~~ 310 (446)
T PRK10197 232 SIFVVVALIPWNMPGLKAVGSYRSVLELLN-IPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINR 310 (446)
T ss_pred HHHHHheecCcCcccccccCcHHHHHHHcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhCc
Confidence 766543332221111 1122222 122222333333344444444334444444432 23321 1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHhHHHHHHHHHHhhHHHHHHHhc
Q 013919 341 SNNYWCFILLRTALVFSSVCAAFLLP--FFSLVMALIGSLLSILVAIIMPSLCFIKILG 397 (434)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~la~~~p--~~~~~~~l~G~~~~~~~~~ilP~l~~l~~~~ 397 (434)
.+.................+.....| .++.++++.+.. ..+.|+++++.+++.||
T Consensus 311 ~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~--~li~y~~~~~a~i~lr~ 367 (446)
T PRK10197 311 SKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAI--ALLVYLVIAVSQLRMRK 367 (446)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 11122222233222222333322233 467777776655 44788889888888865
No 43
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.61 E-value=2.3e-12 Score=129.37 Aligned_cols=247 Identities=15% Similarity=0.188 Sum_probs=173.7
Q ss_pred CccCCCCCchHH-HHHHHHHhhhccccchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhc
Q 013919 39 ELPIAHGCSFTQ-TIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAF 117 (434)
Q Consensus 39 ~~~~~~~~s~~~-~~~~l~~~~iG~Gil~lP~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~ 117 (434)
+.+.+++.+.++ ......+.++|.|++.+|......+....+.+++.+++....+..+.|.+++.|+...+.+.+++.+
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~ 86 (466)
T COG0531 7 SSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYAKRAL 86 (466)
T ss_pred chhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeehhhhc
Confidence 334456677888 8999999999999999998887666233334677777777778999999888898889999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCc-hhHHHHHHHHHHhhhhccccCchhhHhhHH
Q 013919 118 GKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDS-THLFGILTALIVLPTIWLRDLRVISYLSAT 196 (434)
Q Consensus 118 G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~ 196 (434)
||+.++++.+...+.......+.....++.+...++.... ..... ......+....++-+...++.+...+++..
T Consensus 87 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~ 162 (466)
T COG0531 87 GPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGL----LSIGPLLIILIALALIALLTLLNLRGIKASAKINSI 162 (466)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchh----hcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9998899999999988888888888888888877764210 00000 111222233333334455677777776666
Q ss_pred HHHHHHHHHHhhhhcccc--cccccCCCC----ccccccchhhHHHHHHHhccCccchhhHHhhccchh-hhHHHHHHHH
Q 013919 197 GVVATILIVLCVLFLGTI--EGIGFHPTG----QVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCF 269 (434)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~s~ 269 (434)
..+..+...+.+...... .....+... .......+..++....|+|.|.+.+.+..+|+|||+ +.+|++..++
T Consensus 163 ~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii~~~ 242 (466)
T COG0531 163 ITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSL 242 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHHHHHHH
Confidence 655544433333222111 111011111 112234677889999999999999999999999996 7899999999
Q ss_pred HHHHHHHHHHHhHHHHhhcC
Q 013919 270 ALCVLIYGGVAVMGFLMFGQ 289 (434)
Q Consensus 270 ~~~~~~Y~~~g~~gy~~fg~ 289 (434)
..+.++|++.........++
T Consensus 243 ~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 243 LIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHHHHHHHHHHHhCccH
Confidence 99999999988877766654
No 44
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.56 E-value=2.5e-11 Score=121.83 Aligned_cols=250 Identities=11% Similarity=0.026 Sum_probs=156.9
Q ss_pred CccCCCCCchHHHHHHHHHhh-hccccchhHHH-HHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHh
Q 013919 39 ELPIAHGCSFTQTIFNGINVM-AGVGLLSTPYT-VKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAA 116 (434)
Q Consensus 39 ~~~~~~~~s~~~~~~~l~~~~-iG~Gil~lP~a-~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~ 116 (434)
+++.+|+.|.++.+..-.+.+ +|.|++++|.. ..+.|...+..+++.++.....+..+.|.+.++|........+++.
T Consensus 8 ~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~~~~ 87 (475)
T TIGR03428 8 QPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGPAFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSRRM 87 (475)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHH
Confidence 445678899999999988875 99999998754 5666664667788889999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCC-CC-CCCcc---cCchhHHHHHHHHHHhhhhccccCchhh
Q 013919 117 FGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGAS-LD-WPGFQ---LDSTHLFGILTALIVLPTIWLRDLRVIS 191 (434)
Q Consensus 117 ~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~-~~-~~~~~---~~~~~~~~~~~~~i~~pl~~~~~~~~l~ 191 (434)
+||...+++.+...+................+..+.+... .. .+++. ...+.....+..+++.-+...+..|..+
T Consensus 88 ~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k~~~ 167 (475)
T TIGR03428 88 GGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVEWMS 167 (475)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 9999999999888776544444444444444433321110 00 00000 0001122222222233334445667777
Q ss_pred HhhHHHHHHHHHHHHhhhhcc---cccccc--cCCC--Ccccc-ccchhhHHHHHHHhccCccchhhHHhhccchh-hhH
Q 013919 192 YLSATGVVATILIVLCVLFLG---TIEGIG--FHPT--GQVVK-WSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFT 262 (434)
Q Consensus 192 ~~s~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~--~~~~~-~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~ 262 (434)
+++....+..+..++.++... ...+.. ++.. .+..+ ...+..+.....|+|.|.+.+..+.+|+|||+ +.|
T Consensus 168 ~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~r~iP 247 (475)
T TIGR03428 168 RVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNPRRVAP 247 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCcchhhh
Confidence 776655544332222221111 111110 1111 01111 12344566667899999999999999999997 699
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhc
Q 013919 263 KALITCFALCVLIYGGVAVMGFLMFG 288 (434)
Q Consensus 263 ~~~~~s~~~~~~~Y~~~g~~gy~~fg 288 (434)
|++..+..+..++|.+.-+......+
T Consensus 248 rai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 248 RTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999988877766555544444
No 45
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.53 E-value=7.5e-12 Score=119.06 Aligned_cols=283 Identities=18% Similarity=0.211 Sum_probs=204.3
Q ss_pred CCchHHHHHHHHHhhhccccchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcccchhhH
Q 013919 45 GCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLL 124 (434)
Q Consensus 45 ~~s~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~ 124 (434)
|+|..|....+..+++|+|++.+|...++.+--|++..++.+.......+++.+..+++|+ ++..|+.++.+||+.+.+
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~-~~l~~~~~~~~Gk~lg~i 79 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAGDAWISVLLGGLIGLLLALLIYYLLKRFPG-KTLVEISEKLFGKWLGKI 79 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHhCcHHHHH
Confidence 4788999999999999999999999886555137777777788888888888888776666 899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhc-CCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHHHHHHH
Q 013919 125 ISVLLYTELYSYCVEFIILEGDNLTSLF-PGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATIL 203 (434)
Q Consensus 125 ~~~~~~~~~~g~~~~y~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~~ 203 (434)
......++.+..........+|.++..+ ++. .........++..-....++++.+.+.+.+-....+.
T Consensus 80 i~~~~~l~~l~~~~~~lr~~~~~i~~~~lp~T-----------P~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i 148 (320)
T PF03845_consen 80 INLLYILYFLLISALVLREFSEFIKTYLLPET-----------PIWVIILLFLLVAAYAARKGIEVIARVAEILFPIFLI 148 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC-----------CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 9999999988888888888899888754 322 2233333333444444567888888866655444333
Q ss_pred HHHhhhhcccccccccCCCCc--cccccchhhHHHHHHHhccCccchhhHHhhccchhhhHHHHHHHHHHHHHHHHHHHh
Q 013919 204 IVLCVLFLGTIEGIGFHPTGQ--VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAV 281 (434)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~s~~~~~~~Y~~~g~ 281 (434)
..+.+. ....++.+++.-.| ..++.++..+.....+.|.+...+..+...+|+|+|.+|....+...+.++|...-+
T Consensus 149 ~~~~i~-~~~~~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 227 (320)
T PF03845_consen 149 LLLLIL-LLSIPNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKKSLLIAILISGLFLLFIIF 227 (320)
T ss_pred HHHHHH-HHhcccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222 22334444433222 456778888988899999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCchhhhh-------hcCCCch---hHHHHHHHHHHHHHhhhhcchhcchHHHHHhhcCCCC
Q 013919 282 MGFLMFGQGTLSQIT-------LNMPPHA---FASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGI 340 (434)
Q Consensus 282 ~gy~~fg~~~~~~il-------~~~~~~~---~~~~v~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~ 340 (434)
.....||.+..++.. ....-++ +...+.........+.+.....+-..+.+.+.++.++
T Consensus 228 ~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~~~~ 296 (320)
T PF03845_consen 228 ITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFKLKD 296 (320)
T ss_pred HHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999965433311 1111111 2222223344556667777788888888999887664
No 46
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.53 E-value=4.3e-11 Score=120.52 Aligned_cols=242 Identities=6% Similarity=-0.018 Sum_probs=144.3
Q ss_pred CccCCCCCchHHHHHHHHHhhhc--cccch-hHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHH
Q 013919 39 ELPIAHGCSFTQTIFNGINVMAG--VGLLS-TPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGE 114 (434)
Q Consensus 39 ~~~~~~~~s~~~~~~~l~~~~iG--~Gil~-lP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~ 114 (434)
+++.+|+.+.++.+...++. +| .|+.. .+.+.++.|.. .++.+++.+++....+..+.|.+.+.|...+....++
T Consensus 7 ~~~l~r~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~~ 85 (482)
T TIGR00907 7 KPELKREFSLWSIFGFAFSI-SNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFWSA 85 (482)
T ss_pred cceeecccchhHHHHHHHHH-HHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 33456778889988888884 44 66655 44567788887 6778899999999999999999999999999999999
Q ss_pred Hhccc----chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCc-hhHHHHHHHHHHhhhhccccCch
Q 013919 115 AAFGK----YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDS-THLFGILTALIVLPTIWLRDLRV 189 (434)
Q Consensus 115 ~~~G~----~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~pl~~~~~~~~ 189 (434)
+.+|+ ...+++.+...+.....+.+.....++++.......... +.+..+. ......+....++-+...+..|.
T Consensus 86 ~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~in~~g~k~ 164 (482)
T TIGR00907 86 KLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPG-REYIPTRWHIFGIMIGIHLIHALINSLPTKW 164 (482)
T ss_pred HhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCccccCchhhhhHHHHHHHHHHHHHhhHhH
Confidence 99875 446677776666665655555555666655443211110 0000000 11111122222233334445555
Q ss_pred hhHhhHHHHHHHHHHHHhhh-h--cccccc-cc----cCC-CCccccc----cchhhHHHHHHHhccCccchhhHHhhcc
Q 013919 190 ISYLSATGVVATILIVLCVL-F--LGTIEG-IG----FHP-TGQVVKW----SGMPFAIGIYGFCYSGHSVFPNIYQSMA 256 (434)
Q Consensus 190 l~~~s~~~~~~~~~~~~~~~-~--~~~~~~-~~----~~~-~~~~~~~----~~~~~~~~~~~faf~~~~~i~~i~~~m~ 256 (434)
..+++....+..+...+.+. . .....+ .+ .+. .+....+ ..+..++....|+|.|.+......+|+|
T Consensus 165 ~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~k 244 (482)
T TIGR00907 165 LPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEIE 244 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHhcC
Confidence 66665544333222222111 1 111111 00 000 0000011 1344556667899999999999999999
Q ss_pred chh-hhHHHHHHHHHHHHHHHHHHHhH
Q 013919 257 DKT-KFTKALITCFALCVLIYGGVAVM 282 (434)
Q Consensus 257 ~p~-~~~~~~~~s~~~~~~~Y~~~g~~ 282 (434)
||+ +.||++..+..+..+++++..+.
T Consensus 245 nP~r~iP~Ai~~s~~i~~~~~~~~~l~ 271 (482)
T TIGR00907 245 NPEVVGPRAIIGAVAIGIVTGFCFNIV 271 (482)
T ss_pred ChhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 997 69999999988877655444333
No 47
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.51 E-value=1.8e-10 Score=116.29 Aligned_cols=239 Identities=14% Similarity=0.148 Sum_probs=141.7
Q ss_pred CCCCchHHHHHHHHHhhhccccchhHHHHHhhcHHHHHHHHHHHHHH-HHHHHHHHHhhhhCCC-CCCHHHHHHHhcccc
Q 013919 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVC-CYTASLMRYCFESKEG-ITTYPDIGEAAFGKY 120 (434)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~g~~~l~~~~~~~-~~~~~~l~~~~~~~~~-~~~y~~l~~~~~G~~ 120 (434)
+|+.|+++.+...+++++|.+ .+|.++++.|..+++..++.+++. .-.+..+.|.+.+.|+ ...-....++.+||+
T Consensus 6 ~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~G~~ 83 (496)
T PRK15238 6 KKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVGPK 83 (496)
T ss_pred cCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHcCch
Confidence 467999999999999999976 679888888987777666666554 4567789999888886 688889999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH-hhhhhhhhcCCCCC-CCCCcccCchhHHHHHHHH--HHhhhhccccCchhhHhhHH
Q 013919 121 GRLLISVLLYTELYSYCVEFIIL-EGDNLTSLFPGASL-DWPGFQLDSTHLFGILTAL--IVLPTIWLRDLRVISYLSAT 196 (434)
Q Consensus 121 ~~~~~~~~~~~~~~g~~~~y~i~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--i~~pl~~~~~~~~l~~~s~~ 196 (434)
+++++.+................ ........+..... .++....+......++..+ ..+-....|+.+..++++.+
T Consensus 84 ~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~vn~~g~~~~~~i~~~ 163 (496)
T PRK15238 84 FAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFLGLNSTQVVGILAVIWMILVTFVASKGINKIAKVTSI 163 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 88876654433322211111000 00000011111100 0000001111112121222 22334456678888877765
Q ss_pred HHHHHHHH----H-Hhhhhccccccc---ccC-----C--CCccccccchhhHHHHHHHhccCccchhhHHhhccchh-h
Q 013919 197 GVVATILI----V-LCVLFLGTIEGI---GFH-----P--TGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-K 260 (434)
Q Consensus 197 ~~~~~~~~----~-~~~~~~~~~~~~---~~~-----~--~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~ 260 (434)
+....+.. + +.........+. +.+ + .+.+.+..++..++....|+|.|.+.+....+|+|||+ +
T Consensus 164 ~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~~ 243 (496)
T PRK15238 164 GGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDKTENPEKN 243 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHHhccCCCcc
Confidence 44332211 1 111111011100 100 0 01111112466677888999999999999999999997 6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHH
Q 013919 261 FTKALITCFALCVLIYGGVAVMG 283 (434)
Q Consensus 261 ~~~~~~~s~~~~~~~Y~~~g~~g 283 (434)
.||++..+...+.++|.+..+..
T Consensus 244 ~p~ai~~~~~~~~~~y~l~~~~~ 266 (496)
T PRK15238 244 FPKGIIIAAIVISIGYSLAIFLW 266 (496)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999865444
No 48
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.51 E-value=1.5e-10 Score=116.36 Aligned_cols=238 Identities=13% Similarity=0.099 Sum_probs=136.3
Q ss_pred CCchHHHHHHHHHhhhccccchhHHHHHhhcHHHHHHHHHHHHHHH-HHHHHHHHhhhhCCCCCCHHHHHHHhcccchhh
Q 013919 45 GCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCC-YTASLMRYCFESKEGITTYPDIGEAAFGKYGRL 123 (434)
Q Consensus 45 ~~s~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~g~~~l~~~~~~~~-~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~ 123 (434)
|.+.+.-++..+.++++ +..+|.+ ++.|...++.+++.+++.. -.+....|.+.+.|+.......+++.+|+++++
T Consensus 2 ~~~~~~l~~~~~~~v~~--~~~~~~~-a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~~gf 78 (474)
T TIGR03813 2 KLTVVTLAIMNITAVVS--LRGLPAE-AEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGARWGF 78 (474)
T ss_pred cccHHHHHHHHHHHHHH--hhcchHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChhHHH
Confidence 46777777777777766 4456755 6788777777777776654 578888999888998888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHH--HHHhhhhccccCchhhHhhHHHH-HH
Q 013919 124 LISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTA--LIVLPTIWLRDLRVISYLSATGV-VA 200 (434)
Q Consensus 124 ~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~pl~~~~~~~~l~~~s~~~~-~~ 200 (434)
...+.++.........-....+..+....+..... +.. ..+......+.. ...+-+...++.|..++++.... +.
T Consensus 79 ~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~~~~~~ 156 (474)
T TIGR03813 79 LAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEATVD-ESL-AGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKWGGIVG 156 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccC-ccc-ccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 98887776543222111111111111111110000 000 011111111111 22223345567777766665432 11
Q ss_pred HHHHHHhh----hhcccccccc-cC----C-CCccccccchhhHHHHHHHhccCccchhhHHhhccchh-hhHHHHHHHH
Q 013919 201 TILIVLCV----LFLGTIEGIG-FH----P-TGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCF 269 (434)
Q Consensus 201 ~~~~~~~~----~~~~~~~~~~-~~----~-~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~s~ 269 (434)
.++..+.+ +......+.. .+ . .+...++..+..+. .+.|+|.|.+.+....+|+|||+ +.||++..+.
T Consensus 157 ~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~~ 235 (474)
T TIGR03813 157 TIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLAA-SIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAA 235 (474)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHHH-HHHHHHhchhHhHHHHHhccCcccchhHHHHHHH
Confidence 11111111 1111111111 10 0 01111233333333 46789999999999999999997 6999999999
Q ss_pred HHHHHHHHHHHhHHHHhhc
Q 013919 270 ALCVLIYGGVAVMGFLMFG 288 (434)
Q Consensus 270 ~~~~~~Y~~~g~~gy~~fg 288 (434)
.++.++|++..+......+
T Consensus 236 ~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 236 LGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHHHHHHHHHHhccC
Confidence 9999999987665444443
No 49
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.48 E-value=1.8e-12 Score=129.38 Aligned_cols=350 Identities=10% Similarity=0.038 Sum_probs=219.8
Q ss_pred ccCCCCCchHHHHHHHHHhhhccccchh-HHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCC-CCHHHHHHHh
Q 013919 40 LPIAHGCSFTQTIFNGINVMAGVGLLST-PYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGI-TTYPDIGEAA 116 (434)
Q Consensus 40 ~~~~~~~s~~~~~~~l~~~~iG~Gil~l-P~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~-~~y~~l~~~~ 116 (434)
.+.+|+.+.++..+.-++++||+|++-. ..+.++.|.. -++..++.+.....++..+.|.+.+.|.. .++..++++.
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~ 105 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRF 105 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeee
Confidence 5677889999999999999999998864 6778888888 66778888999999999999999989985 8888999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhc---------CCCCCCCCCcccCchhHHHHHHHHHHhhhhccccC
Q 013919 117 FGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLF---------PGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDL 187 (434)
Q Consensus 117 ~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~ 187 (434)
.|+.+++.+.+-+++.....+.+.....+.+++.+. +..+. ..+..-.+.++..+.+++.-..-+.
T Consensus 106 i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~-----~~~~~~fla~~v~in~~gv~~~ge~ 180 (554)
T KOG1286|consen 106 VGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNP-----GGWIPDFLAFILIINLFGVLAYGEV 180 (554)
T ss_pred eCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCC-----CccHHHHHHHHHHHHHHHHhhccce
Confidence 999999999999999999999999999999999876 11110 0111112222222222222221233
Q ss_pred chhhHhhHHHHHHHHHHHHhhhhccccccc--ccC------CCCc--cccccchhhHHHHHHHhccCccchhhHHhhccc
Q 013919 188 RVISYLSATGVVATILIVLCVLFLGTIEGI--GFH------PTGQ--VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMAD 257 (434)
Q Consensus 188 ~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~--~~~------~~~~--~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~ 257 (434)
+....++..-....+++...++..+..+.. ++. .+.. +..++++..++....|+|.|.+.+-...+|-||
T Consensus 181 ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kN 260 (554)
T KOG1286|consen 181 EFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKN 260 (554)
T ss_pred eehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccC
Confidence 333322222111112222222222222221 221 1111 223678999999999999999999999999999
Q ss_pred hh-hhHHHHHHHHHHHHHHHHHHHhHHHHh--hcCC-chhhh--------hhcCCCchhHHHHHHHHHHHHHhhhhcchh
Q 013919 258 KT-KFTKALITCFALCVLIYGGVAVMGFLM--FGQG-TLSQI--------TLNMPPHAFASKVAVWTTVINPFTKYALLM 325 (434)
Q Consensus 258 p~-~~~~~~~~s~~~~~~~Y~~~g~~gy~~--fg~~-~~~~i--------l~~~~~~~~~~~v~~~~~~~~~~~s~pl~~ 325 (434)
|+ +.|+++..++..+..+|++..+.--+. |.+. ..++. -.+...-.....+.....++.+..+--..+
T Consensus 261 P~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~ 340 (554)
T KOG1286|consen 261 PRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSL 340 (554)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHh
Confidence 97 699999999999999999887754433 2221 11111 111111112222444555555556666666
Q ss_pred cchHHHHHhhc-----CCC--CCChhHHHHH-HHHHHHHHHHHHHhhcc-----cHHHHHHHHhHHHHHHHHHHhhHHHH
Q 013919 326 NPLARSIEELL-----PAG--ISNNYWCFIL-LRTALVFSSVCAAFLLP-----FFSLVMALIGSLLSILVAIIMPSLCF 392 (434)
Q Consensus 326 ~~~~~~~~~~~-----~~~--~~~~~~~~~~-~~~~~~~~~~~la~~~p-----~~~~~~~l~G~~~~~~~~~ilP~l~~ 392 (434)
++.-|.+..+- |+- +-+++ .+.. ......++..+.++... .++.++++.|.- +.+++.+=++.|
T Consensus 341 y~~sR~l~amA~~G~~Pk~f~~v~~~-g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~--tl~~w~~i~~~~ 417 (554)
T KOG1286|consen 341 YAGSRVLYALAKDGLAPKFFARVDRR-GVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIG--TLFAWTLVALSH 417 (554)
T ss_pred HHhHHHHHHHHhcCCcchHHhhcCCC-CCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHH--HHHHHHHHHHHH
Confidence 67766665543 221 11112 2222 22223333333443332 368888886654 666777777777
Q ss_pred HHHhc
Q 013919 393 IKILG 397 (434)
Q Consensus 393 l~~~~ 397 (434)
++.|+
T Consensus 418 i~~R~ 422 (554)
T KOG1286|consen 418 LRFRY 422 (554)
T ss_pred eeeee
Confidence 77753
No 50
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.46 E-value=1.9e-10 Score=111.49 Aligned_cols=346 Identities=12% Similarity=0.121 Sum_probs=226.1
Q ss_pred cCCCCCchHHHHHHHHHhhhccccc-hhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcc
Q 013919 41 PIAHGCSFTQTIFNGINVMAGVGLL-STPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG 118 (434)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil-~lP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G 118 (434)
+.+|+....+..++-++..||+|.+ +.-.+++++|.. .++..++.+.+.+..+..+.|++...|...++..++.+..+
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfvd 120 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFVD 120 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhcC
Confidence 4678889999999999999999965 578999999999 77888999999999999999999989977889999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhh--hccccCchhhH-hhH
Q 013919 119 KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPT--IWLRDLRVISY-LSA 195 (434)
Q Consensus 119 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl--~~~~~~~~l~~-~s~ 195 (434)
+-.++.+.+.+++....++..-++..+..++...++.- +...|..+..++++.+ .-.|...+.-+ +|.
T Consensus 121 pa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~v---------~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~ 191 (541)
T COG0833 121 PAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDTV---------PPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSS 191 (541)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCCC---------ChHHHHHHHHHHHHHHHHhcccccceehHHHHH
Confidence 99999999999999999999999999998888875431 1233444444444433 33344444433 333
Q ss_pred HHHHHHHHHHHhh--hhcccccccc------cCCCCc-cccccchhhHHHHHHHhccCccchhhHHhhccchh-hhHHHH
Q 013919 196 TGVVATILIVLCV--LFLGTIEGIG------FHPTGQ-VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKAL 265 (434)
Q Consensus 196 ~~~~~~~~~~~~~--~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~ 265 (434)
+=+++++..++.. +..+..++.+ ++.+.+ ...+.++...+-...|||.|-+.+--...|-+||+ ..||++
T Consensus 192 iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAi 271 (541)
T COG0833 192 IKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAI 271 (541)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHH
Confidence 3333322222211 1122222111 111222 23467888899999999999999999999999997 589999
Q ss_pred HHHHHHHHHHHHHHHhH-HHH-hhcCC----------chhhhhhcCCC--chhHHHHHHHHHHHHHhhhhcchhcchHHH
Q 013919 266 ITCFALCVLIYGGVAVM-GFL-MFGQG----------TLSQITLNMPP--HAFASKVAVWTTVINPFTKYALLMNPLARS 331 (434)
Q Consensus 266 ~~s~~~~~~~Y~~~g~~-gy~-~fg~~----------~~~~il~~~~~--~~~~~~v~~~~~~~~~~~s~pl~~~~~~~~ 331 (434)
.-...=..++|++.-++ |.+ -+.|. ..++...-+.+ -.....+.+....++++.+---.++...|.
T Consensus 272 k~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~ 351 (541)
T COG0833 272 KQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRM 351 (541)
T ss_pred HHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHH
Confidence 99888888888764332 222 12221 11121111111 112334444555555555555555666666
Q ss_pred HHhhcCCC---------CCCh-hHHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHhHHHHHHHHHHhhHHHHHHHhc
Q 013919 332 IEELLPAG---------ISNN-YWCFILLRTALVFSSVCAAFLLP--FFSLVMALIGSLLSILVAIIMPSLCFIKILG 397 (434)
Q Consensus 332 ~~~~~~~~---------~~~~-~~~~~~~~~~~~~~~~~la~~~p--~~~~~~~l~G~~~~~~~~~ilP~l~~l~~~~ 397 (434)
+..+-.++ +++. .+..+.++.++-+++++-+..-. .+.-++++.|.. .+++++-=++.|++.||
T Consensus 352 L~sLA~~g~APk~f~~~~r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s--~~i~W~~I~~shirFR~ 427 (541)
T COG0833 352 LYSLAKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLS--GFIAWGSICLSHIRFRR 427 (541)
T ss_pred HHHHHhcCCCchHHHhhCCCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 65543221 2222 23345555555555665555532 477888887766 44566666888888763
No 51
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.39 E-value=1.5e-09 Score=109.50 Aligned_cols=231 Identities=12% Similarity=0.065 Sum_probs=132.2
Q ss_pred CCCCchHHHHHHHHHhhhccccchhHHHHHhhcHHHHHHHHHHHHH-HHHHHHHHHHhhhhCC-CCCCHHHHHHHhcccc
Q 013919 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVV-CCYTASLMRYCFESKE-GITTYPDIGEAAFGKY 120 (434)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~g~~~l~~~~~~-~~~~~~~l~~~~~~~~-~~~~y~~l~~~~~G~~ 120 (434)
+++.|.++.++..+..+.+ +..+| .+++.|+..+..+++.+++ ..-.+..+.|.....+ +.......+++++|++
T Consensus 3 ~~~l~~~~~~~~~~~~v~~--~~~~~-~~a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G~~ 79 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVLA--VYEYP-TFATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLGER 79 (507)
T ss_pred CcEeeHHHHHHHHHHHHHH--HHhhH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccCcc
Confidence 3558999998888888764 57888 5778886666666655554 4557788899987665 6677888899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHH-HHHHHHHHhhhhccccCchhhHhhHHHHH
Q 013919 121 GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLF-GILTALIVLPTIWLRDLRVISYLSATGVV 199 (434)
Q Consensus 121 ~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~pl~~~~~~~~l~~~s~~~~~ 199 (434)
+++++.+.+++....................+... +...+..... ..+..+..+-+...++.+...+++..+.+
T Consensus 80 ~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~~-----~~~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~i~~i~~~ 154 (507)
T TIGR00910 80 FGFAAIFFGWFQIAIGFIPMIYFILGALSYILKFP-----ALNEDPIIKFIAALIIFWALAFSQFGGTKRTAKIAKAGFF 154 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-----hhccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 98887776666543222221111111111111110 0001111111 11122222333345566666666654432
Q ss_pred HHHHH-HHhhh---hccccccccc----CCCCcccccc--chhhHHHHHHHhccCccchhhHHhhccchh-hhHHHHHHH
Q 013919 200 ATILI-VLCVL---FLGTIEGIGF----HPTGQVVKWS--GMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITC 268 (434)
Q Consensus 200 ~~~~~-~~~~~---~~~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~s 268 (434)
..+.. .+.++ ......+.+. +......++. +....+....|+|.|.+......+|+|||+ ++||++..+
T Consensus 155 ~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~PrAi~~~ 234 (507)
T TIGR00910 155 AGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDYPLAMILL 234 (507)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCcccccHHHHHH
Confidence 22111 11111 1111111111 1011111222 233455557899999999999999999997 699999999
Q ss_pred HHHHHHHHHHHHh
Q 013919 269 FALCVLIYGGVAV 281 (434)
Q Consensus 269 ~~~~~~~Y~~~g~ 281 (434)
..++.++|.+..+
T Consensus 235 ~i~~~~l~~l~~~ 247 (507)
T TIGR00910 235 MIAAICLDAIGGF 247 (507)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999986544
No 52
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.25 E-value=5.8e-11 Score=119.50 Aligned_cols=231 Identities=13% Similarity=0.126 Sum_probs=152.3
Q ss_pred HHHHhhhccccch-hHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcccchhhHHHHHHHH
Q 013919 54 NGINVMAGVGLLS-TPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLYT 131 (434)
Q Consensus 54 ~l~~~~iG~Gil~-lP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~ 131 (434)
..+++++|.|++. .+.+..+.|.. ..+..++.+++....+..+.|..++.|...++.+++++.+|+..+..+.+..+.
T Consensus 5 ~~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~y~~ 84 (478)
T PF00324_consen 5 ISIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWAYWL 84 (478)
T ss_pred eeHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHHHHH
Confidence 3467889999775 56788999997 778889999999999999999999999999999999999999999999988777
Q ss_pred HHHHHHHHHHHHhhhhhhhh--cCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHHHHHHHHHHhhh
Q 013919 132 ELYSYCVEFIILEGDNLTSL--FPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVL 209 (434)
Q Consensus 132 ~~~g~~~~y~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~ 209 (434)
.............+..++.. .++... .+ .... .+..+..+++..+ ...+.+..+.+...-....+...+..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~-~~~~i~~~~~~~l-~~~gv~~~~~~~~~~~~i~~~~li~~i 158 (478)
T PF00324_consen 85 SYIAAIAAEATAAGSFLQFWGYFPGLPS---TW-VWGI-LIAIIFILLITLL-NLFGVRVSGKIEFILTIIKLIALIAFI 158 (478)
T ss_pred HHHHHHHhhhhhhhhhhccccccccccc---cc-cccc-hhhhhhhhhhhhh-hhhhhhccchHHHHHHHHhhhHhhhhh
Confidence 77666666666666655554 222210 01 1000 1122222222222 222444444433222222221111111
Q ss_pred hcc----ccc-ccccC----C-------------CCccccccchhhHHHHHHHhccCccchhhHHhhccchh-hhHHHHH
Q 013919 210 FLG----TIE-GIGFH----P-------------TGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALI 266 (434)
Q Consensus 210 ~~~----~~~-~~~~~----~-------------~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~ 266 (434)
... ... +.... . ++...++.++..++...+++|.|.+.+....+|.|||+ +.||+..
T Consensus 159 i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~~ 238 (478)
T PF00324_consen 159 IVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPRATL 238 (478)
T ss_pred hhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchhhhhhHhh
Confidence 111 111 11000 0 01122367899999999999999999999999999998 6999999
Q ss_pred HHHHHHHHHHHHHHhHHHHhhcCC
Q 013919 267 TCFALCVLIYGGVAVMGFLMFGQG 290 (434)
Q Consensus 267 ~s~~~~~~~Y~~~g~~gy~~fg~~ 290 (434)
.+.....++|++.....-...+.+
T Consensus 239 ~~~~~~~v~y~~~~~~~~~~~~~~ 262 (478)
T PF00324_consen 239 LSVLRIGVFYVLTSYALTLAVPYD 262 (478)
T ss_pred hhhhhhhhhhhhhhhhcccccCcc
Confidence 999999999998877666655543
No 53
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.15 E-value=7.2e-08 Score=93.75 Aligned_cols=250 Identities=10% Similarity=0.054 Sum_probs=145.7
Q ss_pred hcCCccCCCCCchHHHHH---HHHHhhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHH
Q 013919 36 LTGELPIAHGCSFTQTIF---NGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPD 111 (434)
Q Consensus 36 ~~~~~~~~~~~s~~~~~~---~l~~~~iG~Gil~lP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~ 111 (434)
..-+++.+|+-++++.+. .+.+..-|.. -++.+.+...|.. -...+++.+.+....+.-+.|.+...|......-
T Consensus 40 lgYkqef~R~fs~~s~fg~sFs~~g~~~~i~-tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~PtsGgLy~ 118 (550)
T KOG1289|consen 40 LGYKQELKREFSLFSIFGISFSLMGLLPGIA-TSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPTSGGLYF 118 (550)
T ss_pred cCCchhhhhhhhHHHHHHHHHHHhcchhhhh-hheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCCcHHH
Confidence 334555666666555443 3333333322 2466666777777 5567888899999999999999998998777766
Q ss_pred HHHHhcccchh----hHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchh-HHHHHHHHHHhhhhcccc
Q 013919 112 IGEAAFGKYGR----LLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTH-LFGILTALIVLPTIWLRD 186 (434)
Q Consensus 112 l~~~~~G~~~~----~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~pl~~~~~ 186 (434)
-+...-+|+++ |++.+...+.+.....+-....++.+.....-.+.+ +...+.. +.......++..+.....
T Consensus 119 waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~---y~~~~~~~~~v~~ai~~v~~lln~~p 195 (550)
T KOG1289|consen 119 WAAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPN---YEPTNYHQFGVFEAILFVHGLLNSLP 195 (550)
T ss_pred HHHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCC---CcccceEeehHHHHHHHHHHHHhcCC
Confidence 66666666554 444444444443333333334445444444333322 2222212 222222223333333334
Q ss_pred CchhhHhhHHHHHHHHHHHHhhhhc---ccccccccCC-------CCcccccc----chhhHHHHHHHhccCccchhhHH
Q 013919 187 LRVISYLSATGVVATILIVLCVLFL---GTIEGIGFHP-------TGQVVKWS----GMPFAIGIYGFCYSGHSVFPNIY 252 (434)
Q Consensus 187 ~~~l~~~s~~~~~~~~~~~~~~~~~---~~~~~~~~~~-------~~~~~~~~----~~~~~~~~~~faf~~~~~i~~i~ 252 (434)
-+.+.+++.++....++.+++.++. ....+.+++. .....+|. ++..++-.-.+++.|.+.-.++.
T Consensus 196 ~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~a 275 (550)
T KOG1289|consen 196 TRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMA 275 (550)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHH
Confidence 4667777777766555444332221 1112112221 11222333 45567777889999999999999
Q ss_pred hhccchh-hhHHHHHHHHHHHHHHHHHHHhHHHHhhcC
Q 013919 253 QSMADKT-KFTKALITCFALCVLIYGGVAVMGFLMFGQ 289 (434)
Q Consensus 253 ~~m~~p~-~~~~~~~~s~~~~~~~Y~~~g~~gy~~fg~ 289 (434)
+|.||++ +.||++..+..+..++=..+-+.-..+-++
T Consensus 276 EE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~ 313 (550)
T KOG1289|consen 276 EETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPD 313 (550)
T ss_pred HHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999997 689999999999888777776666666664
No 54
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.96 E-value=1.2e-06 Score=79.93 Aligned_cols=216 Identities=17% Similarity=0.154 Sum_probs=133.4
Q ss_pred HHHHHHHHHhhhccccchhHH---HHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcccchhhHH
Q 013919 49 TQTIFNGINVMAGVGLLSTPY---TVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLI 125 (434)
Q Consensus 49 ~~~~~~l~~~~iG~Gil~lP~---a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~ 125 (434)
.+-.+..+++++|+|.-+=-- =|.+-|+-|....++++++-..++..+.+..+ +-+..+|.|..++.+||+...+.
T Consensus 6 ~~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~-~f~a~~y~~~~~~v~~~~~~ki~ 84 (349)
T COG3949 6 MRWAFAFIGTVVGAGFASGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGK-KFNATSYREILKYVSGPKFAKII 84 (349)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HhcccchHHHHHHHhhHHHHHHH
Confidence 455677888999999655332 34556666888888999999999999988866 55679999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHH-HHHHHHHhhhhccccCchhhHhhHHHHHHHHHH
Q 013919 126 SVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFG-ILTALIVLPTIWLRDLRVISYLSATGVVATILI 204 (434)
Q Consensus 126 ~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~~~ 204 (434)
+....+++++.+.+-+-..+..+.+.+.- ++++- ++...++..+.+.++.+.+-.++.+-.-..+..
T Consensus 85 d~~iif~lf~~~vVM~AGags~~~e~~~l------------P~wiGali~i~~v~i~lfl~~vegi~tvn~iI~P~LIi~ 152 (349)
T COG3949 85 DIIIIFFLFSTAVVMLAGAGSLLEEMFGL------------PYWIGALIIILLVLILLFLGRVEGIITVNGIITPFLIII 152 (349)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHhCc------------cHHHHHHHHHHHHHHHHHHhcccceeeeheeHHHHHHHH
Confidence 99999999999999988888787776532 23333 334444444555666777666554433322222
Q ss_pred HHhhhhcccccccccCCCC---ccccccchhhHHHHHHHhcc-CccchhhHHhhccchhhhHHHHHHHHHHHHHHHHHH
Q 013919 205 VLCVLFLGTIEGIGFHPTG---QVVKWSGMPFAIGIYGFCYS-GHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGV 279 (434)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~faf~-~~~~i~~i~~~m~~p~~~~~~~~~s~~~~~~~Y~~~ 279 (434)
...+.........+...+. ...+|... +.+-..+... +...+.++-++|++++...+....+-.+..++-.+.
T Consensus 153 l~~v~~~~~f~~~~~~a~~~~~~~~~W~~~--~~~Y~alNi~~~~avLv~lg~~~~~~~~~~~g~l~gglIlgvl~~l~ 229 (349)
T COG3949 153 LVLVTLSFQFTNLGNAAQIVLTKQGNWKAS--AVGYGALNILVAVAVLVPLGGRMESRKVSGIGGLIGGLILGVLLFLI 229 (349)
T ss_pred HHHHHHHHHHhhccchhhhcCCcCCChHHH--HHhhhhHHHHhHhHhhhhhcccccccchhhhhhhhhhHHHHHHHHHH
Confidence 2222211211111111111 11223221 1111122222 445566777999999876665555554444444433
No 55
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=98.92 E-value=3.5e-08 Score=83.15 Aligned_cols=210 Identities=18% Similarity=0.241 Sum_probs=140.3
Q ss_pred HHHHHHHHHhhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhh------------h-C--C--------
Q 013919 49 TQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFE------------S-K--E-------- 104 (434)
Q Consensus 49 ~~~~~~l~~~~iG~Gil~lP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~------------~-~--~-------- 104 (434)
.-......|-++|+|-|++|.+|+.+||. ++.++.+.+.+++.+.....+... + . .
T Consensus 15 ~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~stas 94 (319)
T KOG3832|consen 15 TVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTAS 94 (319)
T ss_pred hhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccccC
Confidence 44566778999999999999999999999 999999999999999887766431 0 0 0
Q ss_pred ---------------------------------CCCCHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 013919 105 ---------------------------------GITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSL 151 (434)
Q Consensus 105 ---------------------------------~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~ 151 (434)
+....+|++...|.|.+-.+.-++++++.+|-...|....-....++
T Consensus 95 d~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~m~i 174 (319)
T KOG3832|consen 95 DDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSAMNI 174 (319)
T ss_pred CCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHhhhh
Confidence 01245688888999999999999999999999999987666555444
Q ss_pred cCCC-CCCC-------------CCcc--c---C-chhHHHHHHHHHHhhhhccccCchhhHhhHHHHHHHHHHHHhhhhc
Q 013919 152 FPGA-SLDW-------------PGFQ--L---D-STHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFL 211 (434)
Q Consensus 152 ~~~~-~~~~-------------~~~~--~---~-~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~~~ 211 (434)
-... +.+. .+|. + + .+.+..++..++.+|+.+. +++..++++++....-..-....+..
T Consensus 175 tcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~~~~~g~~l 253 (319)
T KOG3832|consen 175 TCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAAFILGISL 253 (319)
T ss_pred hhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHhccchhhh
Confidence 3221 1000 0010 0 0 1233445566677788776 77778888876655444333222222
Q ss_pred ccc--cccccCCCCccccccchhhHHHHHHHhccCccchhhHHhhccchh
Q 013919 212 GTI--EGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT 259 (434)
Q Consensus 212 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~ 259 (434)
... ........++...+-++-+.++...|+|.+|++.|.....++.+.
T Consensus 254 ~tmqaeedaa~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k~ 303 (319)
T KOG3832|consen 254 ATMQAEEDAAAAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTKD 303 (319)
T ss_pred hhhhhcccccccCCccccccccccccchhhHHHHhhccCCCCCCCCeecc
Confidence 211 111111223333455677788899999999999999998887543
No 56
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.86 E-value=4.4e-06 Score=83.14 Aligned_cols=338 Identities=14% Similarity=0.091 Sum_probs=173.7
Q ss_pred CchHHHHHHHHHhhhccccchhHHHHHh--hcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcccchh
Q 013919 46 CSFTQTIFNGINVMAGVGLLSTPYTVKE--AGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGR 122 (434)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~lP~a~~~--~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~ 122 (434)
.++++-+..-.+..+...-+.+...... .++. +++..++...+...-......... +.+ .++..+.|..||++|.
T Consensus 14 ~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~-r~G-l~~~v~sR~~FG~~Gs 91 (442)
T TIGR00800 14 WSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGA-KYG-LPFPVLSRASFGIYGS 91 (442)
T ss_pred ccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHH-HhC-CCcchhhhhhhhhhHh
Confidence 4555555555555555444444433332 3344 555555444444444444444433 222 4677889999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCC--CcccC-chhHHHHHHHHHHhhhhccccCchhhHhhHHHHH
Q 013919 123 LLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWP--GFQLD-STHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (434)
Q Consensus 123 ~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~ 199 (434)
.+..+...+...|=........++.+..+++....... +.+.+ ......++...+..++......+........+..
T Consensus 92 ~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~~~~~~~~a~~ 171 (442)
T TIGR00800 92 LLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYKIRHLFEWLAVV 171 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 99999988888888888888888777666554321100 00000 1122233444555555445555555555555544
Q ss_pred HHHHHHHhhhhcccccc-c-ccCCC----CccccccchhhHHHHHH-HhccCccchhhHHhhccchhhhHHHHHHHHHHH
Q 013919 200 ATILIVLCVLFLGTIEG-I-GFHPT----GQVVKWSGMPFAIGIYG-FCYSGHSVFPNIYQSMADKTKFTKALITCFALC 272 (434)
Q Consensus 200 ~~~~~~~~~~~~~~~~~-~-~~~~~----~~~~~~~~~~~~~~~~~-faf~~~~~i~~i~~~m~~p~~~~~~~~~s~~~~ 272 (434)
..+......++.....+ . +.... ........+..++.... +.-..-.+.++..+.+|+|++-.+....++...
T Consensus 172 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~~~~~~~~~~~~~~~ 251 (442)
T TIGR00800 172 PPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSKKTAIWGQFLALPGG 251 (442)
T ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCccchHHHHHHHHHHH
Confidence 43333333332221111 1 10101 11122334444444433 223455688999999999987777788888888
Q ss_pred HHHHHHHHhHHHHh----hcCCchhh--hhhcCCCchhHHHHHH------HHHHH-HHhhhhcchhcchHHHHHhhcCCC
Q 013919 273 VLIYGGVAVMGFLM----FGQGTLSQ--ITLNMPPHAFASKVAV------WTTVI-NPFTKYALLMNPLARSIEELLPAG 339 (434)
Q Consensus 273 ~~~Y~~~g~~gy~~----fg~~~~~~--il~~~~~~~~~~~v~~------~~~~~-~~~~s~pl~~~~~~~~~~~~~~~~ 339 (434)
......+|..+-.. +|+...+. ....+..... ..... +..++ ......-.+.++....+...+|+.
T Consensus 252 ~~~~~~~g~~~a~~~~~~~g~~~~~p~~~~~~~~~~~~-~~~~~~~~f~~~~~vl~~~~t~~~~N~ys~~l~l~~l~~~~ 330 (442)
T TIGR00800 252 FTLTCFFGILGAAAAYAAYGEPYWSPLDILARFLGLTY-AVGARAVFGFGFCFVVAQLSTNISANSYSAGLDIAALLPKY 330 (442)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHhcccch-hhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHhCcCc
Confidence 88888888777765 76543332 3333332211 11111 12222 222456677788888888888765
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHHHHHH
Q 013919 340 ISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAII 386 (434)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~l~G~~~~~~~~~i 386 (434)
.+.++..-...-+...+....+..+.+.+.+++++.|..........
T Consensus 331 ~~~~r~~~i~~ii~~~~~~~~~~~~~~~~~~FL~~lg~~~~P~~gI~ 377 (442)
T TIGR00800 331 IKIKRGSLICAIIALLICPWNLYNSSSKFTTFLSSIGGFLSPIAGVM 377 (442)
T ss_pred cccchHHHHHHHHHHHhccHHHHhchHHHHHHHHHHHHHHHHHHHHH
Confidence 33222111111111111111122222356667777777655544444
No 57
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.79 E-value=2.1e-05 Score=76.28 Aligned_cols=256 Identities=15% Similarity=0.090 Sum_probs=156.1
Q ss_pred HHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchh
Q 013919 111 DIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVI 190 (434)
Q Consensus 111 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l 190 (434)
.++|..||.+|.++..+.+.+.+.|-..+..+..++...+. ++. ....+.++..++..-.+.. ..+.+
T Consensus 85 i~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~-~~~----------~~~~~ili~g~l~~l~~if-G~r~l 152 (442)
T COG1457 85 ILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG-TGL----------PVWAGILIIGVLMTLVTIF-GYRAL 152 (442)
T ss_pred eeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC-CCC----------cHHHHHHHHHHHHHHHHHH-hHHHH
Confidence 66899999999999999999999999999999888872221 111 1223334444444444433 55555
Q ss_pred hHhhHHHHHHHHHHHHhhhhcccccc--cccCCCCccccccchhhHHHHHHHhcc-CccchhhHHhhccchh--hhHHHH
Q 013919 191 SYLSATGVVATILIVLCVLFLGTIEG--IGFHPTGQVVKWSGMPFAIGIYGFCYS-GHSVFPNIYQSMADKT--KFTKAL 265 (434)
Q Consensus 191 ~~~s~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~faf~-~~~~i~~i~~~m~~p~--~~~~~~ 265 (434)
..++..+.......+....+...... .+........++.++..+++...-.+. .-....+..+.+|+|+ |.-...
T Consensus 153 ~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~~~~ 232 (442)
T COG1457 153 HKLERIAVPLLLLLFLYLLALLFRSKGGLDALWVKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAFLAA 232 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccceeeccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHHHHH
Confidence 55555554444444433333332212 111122334556666666655444444 4455677888888888 777788
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhcCCc-hhhhhhcCCCchhHHHHHHHHHHHHHhhhhcchhcchHHHHHhhcCCCCCChh
Q 013919 266 ITCFALCVLIYGGVAVMGFLMFGQGT-LSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNY 344 (434)
Q Consensus 266 ~~s~~~~~~~Y~~~g~~gy~~fg~~~-~~~il~~~~~~~~~~~v~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~~~~~ 344 (434)
..+......+-.+.|...-.+-|+.. ..+....+.. ....+.+...+..+.+.-..+|+..-.+....++. +|
T Consensus 233 ~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~---~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~~l---~k 306 (442)
T COG1457 233 VLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG---FGLPAILILVLGTVTTNANNLYSAGLSFANIIPKL---SK 306 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc---HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhhhh---hh
Confidence 88888888888889998888888766 3333333332 33445566677788888888888877777776643 23
Q ss_pred HHHHHHHHHHHHHHHHHHhh----cccHHHHHHHHhHHHHHHHHHH
Q 013919 345 WCFILLRTALVFSSVCAAFL----LPFFSLVMALIGSLLSILVAII 386 (434)
Q Consensus 345 ~~~~~~~~~~~~~~~~la~~----~p~~~~~~~l~G~~~~~~~~~i 386 (434)
..+.+...+. ..+++|.. ..+++.++.+.|+.........
T Consensus 307 ~~~~v~~~v~--igt~la~~~~~f~~~f~~Fl~~i~~~i~P~~~I~ 350 (442)
T COG1457 307 VTRVVIAGVG--IGTLLALAGPFFYNFFENFLLLLGYFIPPWGGVM 350 (442)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333222 33333333 4577777777777744443333
No 58
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.66 E-value=0.00048 Score=69.30 Aligned_cols=237 Identities=14% Similarity=0.040 Sum_probs=131.5
Q ss_pred CCccCCCCCchHHHHHHHHHhhhccc-cchhHHHHHhhcHH-HHHHHH--HHHHH-HHHHHHHHHHhhhhCCCCCCHHHH
Q 013919 38 GELPIAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWA-SLVVLL--LFAVV-CCYTASLMRYCFESKEGITTYPDI 112 (434)
Q Consensus 38 ~~~~~~~~~s~~~~~~~l~~~~iG~G-il~lP~a~~~~G~~-g~~~l~--~~~~~-~~~~~~~l~~~~~~~~~~~~y~~l 112 (434)
|-.--.|+.+++.....+..+.+|++ .++.|....+.|+. ...... ..+.+ ..+-+..+.+..+ +.+..|.+|+
T Consensus 34 dy~~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~T~~e~ 112 (471)
T TIGR02119 34 EYFLGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISR-KYNAITINDV 112 (471)
T ss_pred ceeEeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCccHHHH
Confidence 33444677999999999999999987 55788777777764 111111 11111 1111223333334 5677999999
Q ss_pred HHHhcccch-hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhh
Q 013919 113 GEAAFGKYG-RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVIS 191 (434)
Q Consensus 113 ~~~~~G~~~-~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~ 191 (434)
.++.||++. +.+..+...+.+++...+.+...+..++.+++ .+ .....++..++..-......++...
T Consensus 113 l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g-i~----------~~~~iii~~~iv~iYt~~GG~~av~ 181 (471)
T TIGR02119 113 LKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG-LS----------YLTALFIFSSSVLIYTTFGGFRAVA 181 (471)
T ss_pred HHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CC----------HHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 999999654 66777777777777777777777777777753 11 2223344445555556667888888
Q ss_pred HhhHHHHHHHHHHHHhhhhcccc--cccc-----c-CCCCcc------cc-cc-chhhHHH-HHHHhccCccchhhHHhh
Q 013919 192 YLSATGVVATILIVLCVLFLGTI--EGIG-----F-HPTGQV------VK-WS-GMPFAIG-IYGFCYSGHSVFPNIYQS 254 (434)
Q Consensus 192 ~~s~~~~~~~~~~~~~~~~~~~~--~~~~-----~-~~~~~~------~~-~~-~~~~~~~-~~~faf~~~~~i~~i~~~ 254 (434)
+...+-.+..+...+.+...... .+.+ . +..+.. .+ +. .+...+. ...+...+++....-.-.
T Consensus 182 ~td~iQ~~v~~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~R~~a 261 (471)
T TIGR02119 182 LTDAIQGIVMFTGTTILLIAVIKAGGGVEKIMEKLKDIDPNLITPFGGDGGLTKPFVASFWILVGIGVIGLPQTAVRCMS 261 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCccccCCCCCCcchhhhHHHHHHHHHHHHHhCchHHHHHHHh
Confidence 87776654443322222211111 1110 0 000000 01 11 1111111 122233333333333334
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHhHHHHh
Q 013919 255 MADKTKFTKALITCFALCVLIYGGVAVMGFLM 286 (434)
Q Consensus 255 m~~p~~~~~~~~~s~~~~~~~Y~~~g~~gy~~ 286 (434)
.||+|+.+|....+......+++...+.|..+
T Consensus 262 ak~~~~a~~~~~~~~~~~~~~~~~~~~~G~~a 293 (471)
T TIGR02119 262 YKDSKAMHRAMIIGTIVVGIIMLGMHLAGVLG 293 (471)
T ss_pred cCCHHHHhhhHhHHHHHHHHHHHHHHHHHHhh
Confidence 57888888988888777677666666666444
No 59
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.62 E-value=0.00038 Score=70.11 Aligned_cols=150 Identities=21% Similarity=0.178 Sum_probs=105.3
Q ss_pred cCCccCCCCCchHHHHHHHHHhhhc-cccchhHHHHHhhcHHHH-HHH---HHHHHHHHHHHHHHHHhhhhCCCCCCHHH
Q 013919 37 TGELPIAHGCSFTQTIFNGINVMAG-VGLLSTPYTVKEAGWASL-VVL---LLFAVVCCYTASLMRYCFESKEGITTYPD 111 (434)
Q Consensus 37 ~~~~~~~~~~s~~~~~~~l~~~~iG-~Gil~lP~a~~~~G~~g~-~~l---~~~~~~~~~~~~~l~~~~~~~~~~~~y~~ 111 (434)
||...-+|+.+.+-.......+..+ ...+++|....+.|+.+. ... +.......+.+..+.+.. +.++..|.+|
T Consensus 31 ~dy~~~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~d 109 (493)
T COG0591 31 EDYFLGGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIPD 109 (493)
T ss_pred HHHhccCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHHH
Confidence 3444556677777777777777777 778999999999998733 222 244444555555666665 5788899999
Q ss_pred HHHHhcc-cchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchh
Q 013919 112 IGEAAFG-KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVI 190 (434)
Q Consensus 112 l~~~~~G-~~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l 190 (434)
+.++-|| |..|.+..+...+.....+...+...++.+...++ .+ ...-..+.+.++........++..
T Consensus 110 ~l~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i~----------~~~~~~~~~~~v~~Yt~~gG~~av 178 (493)
T COG0591 110 FLEARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-IS----------YVTGILIGALIVALYTFLGGLRAV 178 (493)
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CC----------HHHHHHHHHHHHHHHHHHcChhHH
Confidence 9999999 88899999999999999999999999998866654 22 122233344455555555566666
Q ss_pred hHhhHHHH
Q 013919 191 SYLSATGV 198 (434)
Q Consensus 191 ~~~s~~~~ 198 (434)
.+...+-.
T Consensus 179 ~~Td~iqg 186 (493)
T COG0591 179 VWTDFIQG 186 (493)
T ss_pred HHHHHHHH
Confidence 66555443
No 60
>PRK12488 acetate permease; Provisional
Probab=98.59 E-value=0.0008 Score=68.83 Aligned_cols=151 Identities=14% Similarity=0.088 Sum_probs=99.4
Q ss_pred ccCCCCCchHHHHHHHHHhhhccc-cchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcc
Q 013919 40 LPIAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG 118 (434)
Q Consensus 40 ~~~~~~~s~~~~~~~l~~~~iG~G-il~lP~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G 118 (434)
---.|+.+++...+.+..+.++++ .++.|....+.|+.+....+-..+-.......+.+-.+ ..+..|.+|+.++-||
T Consensus 63 ~laGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~~~~~~g~~~g~~~~~~~~a~~lr-~~g~~T~~d~l~~Rf~ 141 (549)
T PRK12488 63 YTAGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDGLLYALGVLAGWPIILFLIAERLR-NLGKYTFADVVSYRLA 141 (549)
T ss_pred eeeCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHH-HCCCcchHHHHHHHcC
Confidence 334677999999999999988887 57799888888877543322211111122234444444 4456899999999998
Q ss_pred -cchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHH
Q 013919 119 -KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATG 197 (434)
Q Consensus 119 -~~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~ 197 (434)
|+.|.+..+...+.........+...+..++.+++ .+ ...-.++..++..-.+....++...+...+-
T Consensus 142 s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g-i~----------~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ 210 (549)
T PRK12488 142 QGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG-IS----------YLYAVVIVGALMVLYVTFGGMLATTWVQIIK 210 (549)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CC----------HHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 56788888777777667777777777777777753 11 1223334455555566677888888887776
Q ss_pred HHHHH
Q 013919 198 VVATI 202 (434)
Q Consensus 198 ~~~~~ 202 (434)
.+..+
T Consensus 211 ~~im~ 215 (549)
T PRK12488 211 AVLLL 215 (549)
T ss_pred HHHHH
Confidence 54433
No 61
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.59 E-value=0.00012 Score=71.42 Aligned_cols=292 Identities=15% Similarity=0.092 Sum_probs=161.7
Q ss_pred hcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 013919 74 AGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLF 152 (434)
Q Consensus 74 ~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~ 152 (434)
.++. ++...++..++...-.-....... +.+ .++.-+.|..||++|..+..+...+...|=........++.+..++
T Consensus 26 L~~~~ai~aiilG~~i~~~~~~l~~~~G~-~~G-l~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~ 103 (386)
T TIGR02358 26 LGLTRGLLAILLGHLVGVLLLSAAGVIGA-DTG-LSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLG 103 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccC-cCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 555554444444433334444433 222 5788999999999999999998888888888888888888888776
Q ss_pred CCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHHHHHHHHHHhhhhcc-cccccccCCCCccccccch
Q 013919 153 PGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLG-TIEGIGFHPTGQVVKWSGM 231 (434)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 231 (434)
+.... . ++......+..++..+.+. ...+.++++...+........+...+.. ...+.+...+. ..+ ..+
T Consensus 104 ~~~~~---~---~~~~~~~~i~~~l~~~~~~-~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~-~s~ 174 (386)
T TIGR02358 104 GRLFG---E---ESPMLWILIVGILVTLWLL-SGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSELWNR-AGD-MSF 174 (386)
T ss_pred HHhcC---C---CchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcCC-CCC-ccH
Confidence 54210 0 1122233334444444443 3667777777766555444333322211 11111111111 112 233
Q ss_pred hhHHHHHHHh-ccCccchhhHHhhccchhhhHHHHHHHHHHHHHHHHHHHhHHHHhhcCCchhhhhhcCCCchhHHHHHH
Q 013919 232 PFAIGIYGFC-YSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAV 310 (434)
Q Consensus 232 ~~~~~~~~fa-f~~~~~i~~i~~~m~~p~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~v~~ 310 (434)
..++....-. -......++..+..|+|+|..+....+..+...+..++|...-.+.++.....+..... ......
T Consensus 175 ~~~~~~~~~~~~swa~~~~DysRy~k~~~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~d~~~~~~~~g----~~~~~~ 250 (386)
T TIGR02358 175 AVAVELVIAMPLSWLPLIADYTRFARNPRHVFLGTVLGYFIGSCWMYFLGLAVTLATGQTDIISILAGAG----LGIPAL 250 (386)
T ss_pred HHHHHHHHHHHHHHHHHccchhhhcCCCcceehHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcc----HHHHHH
Confidence 3333222211 12334478999999999888888888999999999999988877776543223332221 112233
Q ss_pred HHHHHHHhhhhcchhcchHHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHHHhh--cccHHHHHHHHhHHHHHHHHHH
Q 013919 311 WTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAFL--LPFFSLVMALIGSLLSILVAII 386 (434)
Q Consensus 311 ~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~--~p~~~~~~~l~G~~~~~~~~~i 386 (434)
+...++.+.+...+.++.-..+...+|+.+ ++++... ...+.++++.. ...+.+++++.|.........+
T Consensus 251 ~~~~l~~~~~n~~N~ys~~l~l~~l~~~~~---~~~~~~i---~~ii~~~l~~~~~~~~f~~FL~~lg~~~~P~~gI~ 322 (386)
T TIGR02358 251 LIILLSTVTTTFMDIYSAAISTGNLLPRLK---VKHLAIG---VGVLGTLIALLFPVDKYENFLLLIGSVFAPLYAVV 322 (386)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhc---chHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566777778888777777776442 1222111 12222333322 2457777777776655544443
No 62
>PRK11375 allantoin permease; Provisional
Probab=98.59 E-value=0.00019 Score=72.05 Aligned_cols=302 Identities=14% Similarity=0.106 Sum_probs=147.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcccchhhHHHHHHH-HHHHHHHHHHHHHhhhhhh----hhc
Q 013919 78 SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLY-TELYSYCVEFIILEGDNLT----SLF 152 (434)
Q Consensus 78 g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~-~~~~g~~~~y~i~~~~~~~----~~~ 152 (434)
+++..++...+...-+........ + ...++.-+.|..||++|..+..+... +...+=........++.+. .+.
T Consensus 62 ai~ai~lG~~i~~~~~~l~g~~G~-~-~Gl~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~ 139 (484)
T PRK11375 62 IMLAIILSAFFIAAVMVLNGAAGS-K-YGVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIW 139 (484)
T ss_pred HHHHHHHHHHHHHHHHHHhccccc-c-cCCChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444443333333333333322 2 22578899999999999888777663 3433444444444455444 333
Q ss_pred CCCCC---CCCCcccCch-hHHHHHHHHHHhhhhccccCchhhHhhHHHHHHHHHHHHhhh-hccccccccc--CCCC--
Q 013919 153 PGASL---DWPGFQLDST-HLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVL-FLGTIEGIGF--HPTG-- 223 (434)
Q Consensus 153 ~~~~~---~~~~~~~~~~-~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~-- 223 (434)
+.+.. +.+....... ....++..++..++.+ ...+.++++...+........+... +.....+.+. +..+
T Consensus 140 ~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~~-~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~ 218 (484)
T PRK11375 140 PGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIGF-GGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSG 218 (484)
T ss_pred ccccccccccccCCCcHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCccc
Confidence 22111 0000111111 1222344455555544 4666676666655544433222222 1111111110 0101
Q ss_pred cc---ccccchhhHHHHHHHhcc-CccchhhHHhhccchhhhHHHHHHHHHHHHHHHHHHHhHH----HHhhcCCchhh-
Q 013919 224 QV---VKWSGMPFAIGIYGFCYS-GHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMG----FLMFGQGTLSQ- 294 (434)
Q Consensus 224 ~~---~~~~~~~~~~~~~~faf~-~~~~i~~i~~~m~~p~~~~~~~~~s~~~~~~~Y~~~g~~g----y~~fg~~~~~~- 294 (434)
.. .....+..++...+=++. ...+.++..|..|++++-.+....+..+...+...+|+.. ...+|+...+.
T Consensus 219 ~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy~k~~~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~ 298 (484)
T PRK11375 219 IQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQNAHSFRAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVL 298 (484)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHHHccccchhcccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHH
Confidence 00 011223334433333444 4558999999999999877777777777776665555443 34566543332
Q ss_pred -hhhcCCCchhHHHHHHHHHHHHHhhhhc-chhcchHHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHHHhh--ccc---
Q 013919 295 -ITLNMPPHAFASKVAVWTTVINPFTKYA-LLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAFL--LPF--- 367 (434)
Q Consensus 295 -il~~~~~~~~~~~v~~~~~~~~~~~s~p-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~--~p~--- 367 (434)
++.++. +......+.+..+++.+.+.. .+.++.-..+..++|+..++++. ..+ ..++..+++.. ..+
T Consensus 299 ~i~~~~~-~~~~~~~a~l~~v~a~~~tN~~~N~ys~~~~l~~l~pk~i~~~~~-~~i----~~iig~~~~pw~~~~~~~~ 372 (484)
T PRK11375 299 DIVQRWD-SLFASFFAVLVILMTTISTNATGNIIPAGYQIAALAPTKLTYKNG-VLI----ASIISLLICPWKLMENQDS 372 (484)
T ss_pred HHHHHhc-chHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHhCcCccchhhH-HHH----HHHHHHHhccHHHhccHHH
Confidence 333332 122333344445555666644 68888888889999865322111 111 11122222221 123
Q ss_pred HHHHHHHHhHHHHHHHHHHhh
Q 013919 368 FSLVMALIGSLLSILVAIIMP 388 (434)
Q Consensus 368 ~~~~~~l~G~~~~~~~~~ilP 388 (434)
+..++++.|++.+.....++-
T Consensus 373 f~~FL~~lg~~l~Pi~gImi~ 393 (484)
T PRK11375 373 IYLFLDIIGGMLGPVIGVMMA 393 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 777777777776665555443
No 63
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.58 E-value=0.0012 Score=66.55 Aligned_cols=237 Identities=13% Similarity=0.017 Sum_probs=126.9
Q ss_pred CCccCCCCCchHHHHHHHHHhhhccc-cchhHHHHHhhcHHH-HHHH---HHHHHHHHHHHHHHHHhhhhCCCCCCHHHH
Q 013919 38 GELPIAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWAS-LVVL---LLFAVVCCYTASLMRYCFESKEGITTYPDI 112 (434)
Q Consensus 38 ~~~~~~~~~s~~~~~~~l~~~~iG~G-il~lP~a~~~~G~~g-~~~l---~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l 112 (434)
|-.--.|+.+++...+.+..+.+|++ .++.|....+.|+.. .... ....+...+.+..+.+..+ +.+..|..|+
T Consensus 35 dy~~agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~T~~e~ 113 (483)
T PRK09442 35 EYFLGNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILAR-KYNAVTLNDM 113 (483)
T ss_pred ceeeeCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCccHHHH
Confidence 33444677888999999988888875 667887777777642 1111 1111111223333444444 5577999999
Q ss_pred HHHhcccch-hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhh
Q 013919 113 GEAAFGKYG-RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVIS 191 (434)
Q Consensus 113 ~~~~~G~~~-~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~ 191 (434)
.++.||++. +.+..+...+..+....+.+...+..+..+++ .+ .....++..+++.-.....+++...
T Consensus 114 l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g-i~----------~~~~iii~~~iv~iYt~~GGl~av~ 182 (483)
T PRK09442 114 LRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG-IS----------YETGLLIFGITVALYTAFGGFRAVV 182 (483)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CC----------HHHHHHHHHHHHHHHHHhccHHHHH
Confidence 999999764 55555555555555666667777777777653 11 1223334444555566677888888
Q ss_pred HhhHHHHHHHHHHHHhhhhccc--ccccc-----c-CCCCc------cccccchhhHH---HHHHHhccCccchhhHHhh
Q 013919 192 YLSATGVVATILIVLCVLFLGT--IEGIG-----F-HPTGQ------VVKWSGMPFAI---GIYGFCYSGHSVFPNIYQS 254 (434)
Q Consensus 192 ~~s~~~~~~~~~~~~~~~~~~~--~~~~~-----~-~~~~~------~~~~~~~~~~~---~~~~faf~~~~~i~~i~~~ 254 (434)
+...+-.+..+...+.+.+... .++.+ . +..+. ..++.+..... -...+...+++....=.-.
T Consensus 183 ~TD~iQ~~i~~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~a 262 (483)
T PRK09442 183 LTDALQGIVMLVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTPQGADDILSPPFMTSFWILVCFGVIGLPHTAVRCMS 262 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCCCCCCccccHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 7776665443332222211111 11110 0 00000 01111111111 1122233344333222223
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHhHHHHh
Q 013919 255 MADKTKFTKALITCFALCVLIYGGVAVMGFLM 286 (434)
Q Consensus 255 m~~p~~~~~~~~~s~~~~~~~Y~~~g~~gy~~ 286 (434)
.||+|+.+|...++......+++...+.|...
T Consensus 263 aks~~~a~~~~~~~~~~~~~~~~~~~~~G~~~ 294 (483)
T PRK09442 263 YKDSKALHRGIIIGTIVVGFLMFGMHLAGALG 294 (483)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888899988888777777777666665443
No 64
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.55 E-value=0.00026 Score=69.85 Aligned_cols=147 Identities=16% Similarity=0.070 Sum_probs=99.2
Q ss_pred CCCCchHHHHHHHHHhhhccc-cchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhccc-c
Q 013919 43 AHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK-Y 120 (434)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~G-il~lP~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~-~ 120 (434)
.|+.+++...+.+..+.+|++ .++.|....+.|+.+....+..........+.+.+..+ ..+..|..|+.++-||+ .
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~T~~e~l~~Ryg~~~ 80 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIFI-NNGAYTMPEYLEKRFGKRI 80 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCchhHHHHHHhCchH
Confidence 356788888899988888877 66788877778866433333333334444555555544 45689999999999998 4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHHHH
Q 013919 121 GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVA 200 (434)
Q Consensus 121 ~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~ 200 (434)
.+.+..+...+.........+...+..+..+++ .+ .....++..+++.-......++...+...+-.+.
T Consensus 81 ~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g-i~----------~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i 149 (407)
T TIGR00813 81 LRGLSVLSLILYIFLYMSVDLFSGALLIELITG-LD----------LYLSLLLLGAITILYTVFGGLKAVVWTDTIQAVI 149 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ch----------HHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 667767777777777778888888888887763 11 1223334444555556667888888777766554
Q ss_pred H
Q 013919 201 T 201 (434)
Q Consensus 201 ~ 201 (434)
.
T Consensus 150 ~ 150 (407)
T TIGR00813 150 M 150 (407)
T ss_pred H
Confidence 3
No 65
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.52 E-value=0.00023 Score=70.25 Aligned_cols=146 Identities=16% Similarity=0.220 Sum_probs=88.5
Q ss_pred CCCCchHHHHHHHHHhhhccc-cchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcccch
Q 013919 43 AHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYG 121 (434)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~G-il~lP~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~ 121 (434)
.|+.+++...+.+..+.+|++ +++.|....+.|+.+....+..+.........+.+-.+ ..+..|..|+.++.||+..
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~T~~e~~~~Ryg~~~ 83 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISGLWYAIGYAIGFLLFALFFAPRLR-RSGAVTIPEYLEKRYGSKA 83 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHTHHHHH-HTT--SHHHHHHHHT-HHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeccccchhHHHHHHHHHHhhc-ccchhhhhhhhhhhcCCch
Confidence 456889999999999999886 66789888888877433334334444444455555545 5677999999999999988
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHHH
Q 013919 122 --RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (434)
Q Consensus 122 --~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~ 199 (434)
+.+..+...+.........+...+..++..++ .+ .....++..++++-......++...+...+-.+
T Consensus 84 ~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g-i~----------~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~ 152 (406)
T PF00474_consen 84 LLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG-IP----------YNTAILIVGVIVIIYTFFGGLRAVAWTDFIQGV 152 (406)
T ss_dssp -HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-------------HHHHHHHHHHHHHHTTCTT------SHHHHHHH
T ss_pred hhhhhcccccchhhhhhhhccccccccchhhccc-hh----------hhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHH
Confidence 66666656666667777788888888887764 11 223334445555556666677777766655544
Q ss_pred H
Q 013919 200 A 200 (434)
Q Consensus 200 ~ 200 (434)
.
T Consensus 153 i 153 (406)
T PF00474_consen 153 I 153 (406)
T ss_dssp H
T ss_pred H
Confidence 3
No 66
>PRK11017 codB cytosine permease; Provisional
Probab=98.42 E-value=0.00082 Score=66.04 Aligned_cols=288 Identities=15% Similarity=0.103 Sum_probs=138.1
Q ss_pred hcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 013919 74 AGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLF 152 (434)
Q Consensus 74 ~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~ 152 (434)
.++. ++...++...+...-......... +. ..++..+.|..||.+|..+..+...+...+=........++.+.+..
T Consensus 39 Ls~~~ai~aiilG~~i~~~~~~l~~~~G~-k~-G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~ 116 (404)
T PRK11017 39 LSFVDFLLAVLIGNLLLGIYTAALGYIGA-KT-GLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKAT 116 (404)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc-CcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3444 444444433333333333333323 22 26888999999999999988887777766655555555666555543
Q ss_pred CCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHHHHHHHHHHhhhhcccc--cccccCCCCccccccc
Q 013919 153 PGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTI--EGIGFHPTGQVVKWSG 230 (434)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 230 (434)
+ .+ .. ...++..++..+.... ..+.++++...+........+...+.... .+.+.-...+..+...
T Consensus 117 ~-~~---------~~-~~~~i~~~l~~~~~~~-G~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 184 (404)
T PRK11017 117 G-LD---------IN-LLIVLSGLLMTVTAYF-GISALTILSRIAVPAIALLGGYSVWLAVNDVGGLDGLKAIVPAEPLD 184 (404)
T ss_pred C-CC---------HH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhcCCCCCccc
Confidence 2 11 11 1333344444444433 33444444444433333222222221111 1111100111112234
Q ss_pred hhhHHHHHHHhc-cCccchhhHHhhccchhhhHHHHHHHHHHHHHHHHHHHhHHHHhhcCCchhhhhhcCCCchhHHHHH
Q 013919 231 MPFAIGIYGFCY-SGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVA 309 (434)
Q Consensus 231 ~~~~~~~~~faf-~~~~~i~~i~~~m~~p~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~v~ 309 (434)
+..++....=.+ ..-.+.++..+..|+|++.......+..+...+..++|...-...|+....+... ..+ .. ...
T Consensus 185 ~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~~~~~~~lg~~i~~~~~~~~G~~~a~~~~~~d~~~~~~--~~~-~~-~~~ 260 (404)
T PRK11017 185 FSAALTLVVGSFISGGTLTADFVRFGRSAKIAVLATMVAFFLGNSLMFIFGAAGAAVYGQADISDVMI--AQG-LL-IPA 260 (404)
T ss_pred HHHHHHHHHHHHHHhHhcCCChHhhccCccceeehhHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHH--Hhc-hH-HHH
Confidence 555554433333 3466888999999988876666777777777777777766666666532222211 111 11 122
Q ss_pred HHHHHHHHhhhhcchhcchHHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHHHh-hcccHHHHHHHHhHHHHHHHHHH
Q 013919 310 VWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAF-LLPFFSLVMALIGSLLSILVAII 386 (434)
Q Consensus 310 ~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~~p~~~~~~~l~G~~~~~~~~~i 386 (434)
.....+...++.....++..-...+..+. +++ +. ..+...++++++. +..++..++++.|...+.....+
T Consensus 261 l~~~~l~~~t~n~~~~ys~~l~~~~l~~~----~~~-~~--~ii~~vi~~~i~~~~~~~~~~FL~~lg~~l~P~~gI~ 331 (404)
T PRK11017 261 IVMLGLNIWTTNDNALYASGLGFCNITRL----SSR-TL--TVVNGIIGTVLALWLYNNFVGWLTLLGSAIPPVGGVI 331 (404)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhcC----cch-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhh
Confidence 23333444444445554444444444321 111 11 1122222233332 23567777777776544444333
No 67
>PRK09395 actP acetate permease; Provisional
Probab=98.36 E-value=0.0048 Score=63.24 Aligned_cols=150 Identities=14% Similarity=0.126 Sum_probs=94.9
Q ss_pred CCccCCCCCchHHHHHHHHHhhhccc-cchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHh
Q 013919 38 GELPIAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAA 116 (434)
Q Consensus 38 ~~~~~~~~~s~~~~~~~l~~~~iG~G-il~lP~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~ 116 (434)
|----.|+.+++...+.+..+.+|++ .++.|....+.|+.+....+-..+........+.+-.+ ..+..|++|+.++-
T Consensus 63 df~~agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~~~~~~~g~~~~~~~~~~~~r-~~g~~T~~d~l~~R 141 (551)
T PRK09395 63 DFYTAGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSIGFLVGWPIILFLIAERLR-NLGKYTFADVASYR 141 (551)
T ss_pred HHhhcCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHH
Confidence 33344667888888888888888876 66899888888886543322222222222334444444 45679999999999
Q ss_pred ccc-chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhH
Q 013919 117 FGK-YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSA 195 (434)
Q Consensus 117 ~G~-~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~ 195 (434)
||+ +.|.+..+...+.........+...+..++.+++ .+ .....++..+++.-.+....++...+...
T Consensus 142 ygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g-i~----------~~~~ili~~~i~~iYt~~GGm~av~~TD~ 210 (551)
T PRK09395 142 LKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG-LN----------YHVAVVLVGVLMMVYVLFGGMLATTWVQI 210 (551)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CC----------HHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 994 5777777766665555556666667776766643 11 22233444455555566678888777776
Q ss_pred HHHH
Q 013919 196 TGVV 199 (434)
Q Consensus 196 ~~~~ 199 (434)
+-.+
T Consensus 211 iQ~i 214 (551)
T PRK09395 211 IKAV 214 (551)
T ss_pred HHHH
Confidence 6544
No 68
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=98.33 E-value=0.0035 Score=60.53 Aligned_cols=311 Identities=16% Similarity=0.158 Sum_probs=148.6
Q ss_pred HHHHHhhhccccchhHHHH-Hhhc--HH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcccchhhHHHHH
Q 013919 53 FNGINVMAGVGLLSTPYTV-KEAG--WA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVL 128 (434)
Q Consensus 53 ~~l~~~~iG~Gil~lP~a~-~~~G--~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~ 128 (434)
+.+.+-.+|+|.|-.|-.. .++| |. +.+.+++.++..-..+.+ +-...+ .+|.++.++. ||+...+..+.
T Consensus 2 ~~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~----av~~~g-G~~~~l~~~~-g~~f~~lf~~~ 75 (378)
T TIGR00796 2 FMLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI----ALALVG-GGYDSLSARI-GKVFGILFTVI 75 (378)
T ss_pred hHHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh----eeeecC-CCHHHHHHHh-ChHHHHHHHHH
Confidence 3466778999999998665 5666 45 777777777666665554 221222 5787777655 55555555444
Q ss_pred HHHHH--HH-----HHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhh---hccccCchhhHhhHHHH
Q 013919 129 LYTEL--YS-----YCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPT---IWLRDLRVISYLSATGV 198 (434)
Q Consensus 129 ~~~~~--~g-----~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl---~~~~~~~~l~~~s~~~~ 198 (434)
+++.. .. ..++|-.. +..+++... ......+..++.+.+ ...|.-|-..++...-.
T Consensus 76 ~~l~iGP~~aiPRtaa~s~e~~----i~p~~~~~~----------~~~~l~i~siiff~i~~~l~~~~~k~~~~iGk~LT 141 (378)
T TIGR00796 76 LYLTIGPLFAIPRTATVSFEMG----IAPLLHSPT----------SLLALFIFSLIFFAVVLLLSLNPSKLIDRVGKFLT 141 (378)
T ss_pred HHHHHHhchhhhHHHHHHHHHH----HHhccCccc----------chHHHHHHHHHHHHHHHHHHcCcccHHHHhHHHHH
Confidence 44332 11 22333332 333333210 011122233333333 22334444444444444
Q ss_pred HHHHHHHHhhhhcccccccc-cCCC-CccccccchhhHHHHHHHhcc-------CccchhhHHh-hccchhh-hHHHHHH
Q 013919 199 VATILIVLCVLFLGTIEGIG-FHPT-GQVVKWSGMPFAIGIYGFCYS-------GHSVFPNIYQ-SMADKTK-FTKALIT 267 (434)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~faf~-------~~~~i~~i~~-~m~~p~~-~~~~~~~ 267 (434)
...+.....++..+.....+ ...+ .+..+-..+.+++-.-.+++. |...+..+.+ |+|||+| .++....
T Consensus 142 P~lLi~l~~lii~g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~ 221 (378)
T TIGR00796 142 PALLVTLLALIIKALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKA 221 (378)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44444333344333332111 1111 111111335555555555665 6777777777 9999974 5555555
Q ss_pred HH---HHHHHHHHHHHhHHHHhhc---CC-chhhhhhcCCC---chhHHHHHHHHHHHHHhhhhcchhcchHHHHHhhcC
Q 013919 268 CF---ALCVLIYGGVAVMGFLMFG---QG-TLSQITLNMPP---HAFASKVAVWTTVINPFTKYALLMNPLARSIEELLP 337 (434)
Q Consensus 268 s~---~~~~~~Y~~~g~~gy~~fg---~~-~~~~il~~~~~---~~~~~~v~~~~~~~~~~~s~pl~~~~~~~~~~~~~~ 337 (434)
+. +....+|.-.+..|...-+ +. ..+.++.+..+ ++.-..+..+...++.+++---....+.+.+++..+
T Consensus 222 G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~ 301 (378)
T TIGR00796 222 GLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP 301 (378)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 55 3334444444444443322 11 11222222111 122222223333344444444444456777777755
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHHHHHHhhHHHHHHH
Q 013919 338 AGISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKI 395 (434)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~l~G~~~~~~~~~ilP~l~~l~~ 395 (434)
+ .+.. ..-......+++++.. .++.++++ +...+.++.|...-+..
T Consensus 302 k---~~y~---~~v~~~~l~s~~ia~~--Gl~~Ii~~----~~PvL~~~YP~~i~lil 347 (378)
T TIGR00796 302 K---LSYK---TWVIVFTLFSFIVANL--GLTQIISI----SIPVLMIIYPLAIVLIL 347 (378)
T ss_pred C---CCHH---HHHHHHHHHHHHHHHh--CHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 3 1122 1122233344445543 67777775 56667777787665544
No 69
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.32 E-value=0.0058 Score=62.56 Aligned_cols=149 Identities=14% Similarity=0.124 Sum_probs=93.9
Q ss_pred cCCCCCchHHHHHHHHHhhhccc-cchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcc-
Q 013919 41 PIAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG- 118 (434)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~G-il~lP~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G- 118 (434)
--.|+.+++.....+..+.+++. .++.|....+.|+.+....+............+.+-.+ ..+..|.+|+.++-||
T Consensus 64 laGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~~~~~~~g~~~~~~i~~~~~a~~lr-r~g~~T~~d~l~~Rf~s 142 (549)
T TIGR02711 64 TAGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDGLIYSLGFLVGWPIILFLIAERLR-NLGRYTFADVASYRLKQ 142 (549)
T ss_pred eeCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCccHHHHHHHHcCC
Confidence 34667888888888888877754 77899888888876544332211111123344555545 3456999999999997
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHH
Q 013919 119 KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGV 198 (434)
Q Consensus 119 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~ 198 (434)
|..|.+..+...+.........+...+..++.+++- + ...-.++..+++........++...+...+-.
T Consensus 143 ~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi-~----------~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~ 211 (549)
T TIGR02711 143 RPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGL-N----------YHVAVVLVGILMVMYVLFGGMLATTWVQIIKA 211 (549)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C----------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 456777666666655555666777777777776531 1 12223444455555566678888888777665
Q ss_pred HHH
Q 013919 199 VAT 201 (434)
Q Consensus 199 ~~~ 201 (434)
+..
T Consensus 212 ~im 214 (549)
T TIGR02711 212 VLL 214 (549)
T ss_pred HHH
Confidence 433
No 70
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=98.12 E-value=0.016 Score=59.54 Aligned_cols=151 Identities=13% Similarity=0.071 Sum_probs=95.7
Q ss_pred CCccCCCCCchHHHHHHHHHhhhccc-cchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHh
Q 013919 38 GELPIAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAA 116 (434)
Q Consensus 38 ~~~~~~~~~s~~~~~~~l~~~~iG~G-il~lP~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~ 116 (434)
|----.|+.+++...+.+..+.++++ .++.|....+.|+.+.....-...........+.+-.+ ..+..|..|+-++-
T Consensus 26 dy~laGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~p~~r-r~~~~T~~e~l~~R 104 (552)
T TIGR03648 26 EFYVAGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGGYVLLALLLAPYLR-KFGKYTVPDFIGDR 104 (552)
T ss_pred HHeeeCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCccHHHHHHHH
Confidence 33444677999999999999988765 67889877778876433222212222233455555555 44678999999999
Q ss_pred cccc-hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhH
Q 013919 117 FGKY-GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSA 195 (434)
Q Consensus 117 ~G~~-~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~ 195 (434)
||++ .+.+..+...+.........+...+..++.+++- +.....++..++..-.+....++...+...
T Consensus 105 f~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi-----------~~~~~iii~~~i~~iYt~~GG~~aV~~TD~ 173 (552)
T TIGR03648 105 YYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEV-----------DFETGVFIGMAIVFFYAVLGGMKGVTWTQV 173 (552)
T ss_pred hCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9855 5777666666666566666666667777666531 122233344455555566678888877766
Q ss_pred HHHHH
Q 013919 196 TGVVA 200 (434)
Q Consensus 196 ~~~~~ 200 (434)
+-.+.
T Consensus 174 iQ~ii 178 (552)
T TIGR03648 174 AQYIV 178 (552)
T ss_pred HHHHH
Confidence 65433
No 71
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=98.06 E-value=7e-05 Score=74.69 Aligned_cols=336 Identities=13% Similarity=0.063 Sum_probs=154.6
Q ss_pred CchHHHHHHHHHhhhccccchhHHHHHh--hcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcccchh
Q 013919 46 CSFTQTIFNGINVMAGVGLLSTPYTVKE--AGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGR 122 (434)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~lP~a~~~--~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~ 122 (434)
.+.++.+..-.+..+....+.+...... .++. +++..++..++............. +.+ .+...++|..||++|.
T Consensus 9 ~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~-r~G-l~~~v~sR~~FG~~Gs 86 (440)
T PF02133_consen 9 WSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGP-RTG-LPTMVLSRASFGYRGS 86 (440)
T ss_dssp B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHH-CC----HHHHTTTTS-TTTT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhccccc-ccC-CCchhcchhccCcchH
Confidence 4566666666666666665555544322 3444 666555555544444444455434 333 5777899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcc-----cC-chhHHHHHHHHHHhhhhccccCchhhHhhHH
Q 013919 123 LLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQ-----LD-STHLFGILTALIVLPTIWLRDLRVISYLSAT 196 (434)
Q Consensus 123 ~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~ 196 (434)
.+..+...+...|-........++.+....+.......... .. ......++..++..+. .....+.++++...
T Consensus 87 ~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~g~~~l~~~~~~ 165 (440)
T PF02133_consen 87 KLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLF-AIYGMKALRRLAVI 165 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHH-HCTHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHH-HhcCHHHHHhHHhh
Confidence 99999988888888888888888888887765321000000 00 0111111112222222 22345555555544
Q ss_pred HHHHHHHHHHhhh-hcccccccc-c-CCCCccccccchhhHHHHHHHhcc-CccchhhHHhhccchhhhHHHHHHHHHHH
Q 013919 197 GVVATILIVLCVL-FLGTIEGIG-F-HPTGQVVKWSGMPFAIGIYGFCYS-GHSVFPNIYQSMADKTKFTKALITCFALC 272 (434)
Q Consensus 197 ~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~faf~-~~~~i~~i~~~m~~p~~~~~~~~~s~~~~ 272 (434)
.........+... +.....+.+ . +..........+..++....-.+. ...+.++..+.+|++++-.+....+....
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy~~~~~~~~~~~~~~~~~~ 245 (440)
T PF02133_consen 166 AAPILLVVFIGMLIWALSKAGGGPLLSAPASPSPSGSFLAAIALVIGSWISWAPNASDYSRYAKSDTSAWWGFWLGFPGG 245 (440)
T ss_dssp CHHHHHHHHHHHHHHHHHHCT-HHHCCS--S----S-HHHHHHHHHCCCHHHHCCCHHHHTTC--HHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhhheeEEEeecCCcchhhhCcccchhHHHHHHHHHHHHhhhhhhhhccccHHhhCCCCCCcEEEEeehhhhH
Confidence 4333222222222 211112111 1 111111111134444433333322 33456689999999988888888888777
Q ss_pred HHHHHHHHhHHHHhh----cCCchhh--hhhcCCCchhHHHHHHHHHHHHHhhhhcchhcchHHHHHhhcCCCCCChhHH
Q 013919 273 VLIYGGVAVMGFLMF----GQGTLSQ--ITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWC 346 (434)
Q Consensus 273 ~~~Y~~~g~~gy~~f----g~~~~~~--il~~~~~~~~~~~v~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~ 346 (434)
......++..+...- +++..+. ++..+.+.........+....+..+..-.+.++....+....+++ .++++
T Consensus 246 ~~~~~~~g~lg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~i~~~~~~~~~~~n~ys~~~~l~~~~~~~--~~~~~ 323 (440)
T PF02133_consen 246 FIPFVLVGILGAAAGGIADGEPIWDPLQILGAFLPPFGGFFPALLILFASIWTNNAANLYSAGLALQNIFPKR--ISRRR 323 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-HHHHHHHHHTS--HHHHHHHHH-HHHHHHHTTHHHHHTHHHHHHHHCCSTTT----HHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHHcccee--ecchH
Confidence 777777777665543 3322222 222222110111112122222333444556677777777777622 12222
Q ss_pred HHHHHHHHHHHHHHHHhhccc----HHHHHHHHhHHHHHHHHHHh
Q 013919 347 FILLRTALVFSSVCAAFLLPF----FSLVMALIGSLLSILVAIIM 387 (434)
Q Consensus 347 ~~~~~~~~~~~~~~la~~~p~----~~~~~~l~G~~~~~~~~~il 387 (434)
+.....+ +.....+.....+ +.+++++.|.........++
T Consensus 324 ~~~~~~~-i~~~~~~~~~~~~~~~~f~~fL~~lg~~~~P~~gI~i 367 (440)
T PF02133_consen 324 GVIIVGV-IGIAIAPWGLLGNFSFLFTNFLSLLGYFLGPWAGIMI 367 (440)
T ss_dssp HHHHHHH-HHHCT-GGGTCCCCHC----HCCCCCHTTHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHhchhhhHHHHHHHHHHhchhHHHHHH
Confidence 2222222 2222222212232 55677777777555554443
No 72
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.03 E-value=0.021 Score=57.74 Aligned_cols=150 Identities=13% Similarity=0.104 Sum_probs=86.4
Q ss_pred cCCCCCchHHHHHHHHHhhhccc-cchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhh----CCCCCCHHHHHHH
Q 013919 41 PIAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFES----KEGITTYPDIGEA 115 (434)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~G-il~lP~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~----~~~~~~y~~l~~~ 115 (434)
--.|+.+++...+.+..+.+++. .++.|....+.|+.+........+........+.+-.++ ..+..|.+|+.++
T Consensus 33 lagr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~ 112 (487)
T TIGR02121 33 LGGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSELWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFEN 112 (487)
T ss_pred eeCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHH
Confidence 34677889998888888888765 567897777788764322222222222233333332221 4567899999999
Q ss_pred hcccchhh---HHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhH
Q 013919 116 AFGKYGRL---LISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISY 192 (434)
Q Consensus 116 ~~G~~~~~---~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~ 192 (434)
-||+..+. +..+...+.........+...+..+..+++ .+ .....++..++..-......++...+
T Consensus 113 Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g-i~----------~~~~iii~~~i~~~Yt~~GGl~av~~ 181 (487)
T TIGR02121 113 RFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG-LD----------YKTGLLIGALIIVIYTFFGGFLAVSW 181 (487)
T ss_pred HhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cc----------HHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99965433 333333333333344455556666666643 11 22233444455555566677777777
Q ss_pred hhHHHHHHH
Q 013919 193 LSATGVVAT 201 (434)
Q Consensus 193 ~s~~~~~~~ 201 (434)
...+-.+..
T Consensus 182 TD~iQ~~i~ 190 (487)
T TIGR02121 182 TDFVQGLLM 190 (487)
T ss_pred HHHHHHHHH
Confidence 776665443
No 73
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=98.02 E-value=0.022 Score=57.73 Aligned_cols=150 Identities=13% Similarity=0.074 Sum_probs=88.8
Q ss_pred ccCCCCCchHHHHHHHHHhhhccc-cchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH----HhhhhCCCCCCHHHHHH
Q 013919 40 LPIAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMR----YCFESKEGITTYPDIGE 114 (434)
Q Consensus 40 ~~~~~~~s~~~~~~~l~~~~iG~G-il~lP~a~~~~G~~g~~~l~~~~~~~~~~~~~l~----~~~~~~~~~~~y~~l~~ 114 (434)
---.|+.+++...+.+..+.+++. .++.|....+.|+.+....+...+........+. +-..+..+..|.+|+.+
T Consensus 36 ~lagr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~ 115 (502)
T PRK15419 36 ILGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFT 115 (502)
T ss_pred eeeCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHH
Confidence 344677999999999998888888 5578988888887642222111111111112211 11223567789999999
Q ss_pred Hhcccchhh---HHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhh
Q 013919 115 AAFGKYGRL---LISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVIS 191 (434)
Q Consensus 115 ~~~G~~~~~---~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~ 191 (434)
+-||++.+. +..+...+.....+...+...+..+..+++ . +.....++..++++.......++...
T Consensus 116 ~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g-i----------~~~~~iii~~~iv~iYt~~GGl~aV~ 184 (502)
T PRK15419 116 GRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG-M----------SYETALWAGAAATILYTFIGGFLAVS 184 (502)
T ss_pred HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C----------CHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 999965433 344444444444445555556666666653 1 12233444555666666777888888
Q ss_pred HhhHHHHHH
Q 013919 192 YLSATGVVA 200 (434)
Q Consensus 192 ~~s~~~~~~ 200 (434)
+...+-.+.
T Consensus 185 ~TD~iQ~~i 193 (502)
T PRK15419 185 WTDTVQASL 193 (502)
T ss_pred HHHHHHHHH
Confidence 877666543
No 74
>PRK10484 putative transporter; Provisional
Probab=98.00 E-value=0.026 Score=57.59 Aligned_cols=159 Identities=16% Similarity=0.091 Sum_probs=85.2
Q ss_pred CCccCCCCCchHHHHHHHHHhhhccc-cchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHh
Q 013919 38 GELPIAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAA 116 (434)
Q Consensus 38 ~~~~~~~~~s~~~~~~~l~~~~iG~G-il~lP~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~ 116 (434)
|----+|+.+++-..+.+..+.++++ .++.|....+.|+.........+.......+.+..-.+ ..+..|.+|+.++-
T Consensus 32 dyflagR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~-r~~~~T~~e~l~~R 110 (523)
T PRK10484 32 GYFLAGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMAWEVTAAIALIILALIFLPRYL-KSGITTIPDFLEER 110 (523)
T ss_pred hheecCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCccHHHHHHHh
Confidence 33344677999999999988888877 56788777777866322112112222223344444334 35778999999999
Q ss_pred cccchhhHHHHHHHHHHHHHH-HHHHHHhhhhhhhhcCCCCCCCCCcccCchhHH---HHHHHHHHhhhhccccCchhhH
Q 013919 117 FGKYGRLLISVLLYTELYSYC-VEFIILEGDNLTSLFPGASLDWPGFQLDSTHLF---GILTALIVLPTIWLRDLRVISY 192 (434)
Q Consensus 117 ~G~~~~~~~~~~~~~~~~g~~-~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~pl~~~~~~~~l~~ 192 (434)
||++.+.+......+...... ...+...+..+.+++.... ..+. +..... .++..++.........++...+
T Consensus 111 yg~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~--~~gi--~~~~~~~~~~~~~~~i~~~Yt~~GGl~aV~~ 186 (523)
T PRK10484 111 YDKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSE--LLGI--SYGAAIWLLVWLIGIIGAIYAVFGGLKAVAV 186 (523)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh--hcCC--cHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 999887766654443332222 2222222333333321100 0011 111111 1122334445556678888888
Q ss_pred hhHHHHHHH
Q 013919 193 LSATGVVAT 201 (434)
Q Consensus 193 ~s~~~~~~~ 201 (434)
...+-.+..
T Consensus 187 TD~iQ~vim 195 (523)
T PRK10484 187 SDTINGIGL 195 (523)
T ss_pred HHHHHHHHH
Confidence 777665443
No 75
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.96 E-value=0.002 Score=60.61 Aligned_cols=196 Identities=12% Similarity=0.077 Sum_probs=121.1
Q ss_pred CCchHHHHHHHHHhhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcccchhh
Q 013919 45 GCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRL 123 (434)
Q Consensus 45 ~~s~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~ 123 (434)
..+.+..+.+=..++-|+|...=|..-++-||. +.+.+++-+++.--..-...-...-.++.+|.+|++++..||+++.
T Consensus 51 P~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~lG~~~~~ 130 (376)
T PF02554_consen 51 PTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKGKSIGEIAGKYLGKRAKK 130 (376)
T ss_pred CCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHHHHHH
Confidence 366789999999999999999889877999999 8777765444444444344333333445589999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHHHHHHH
Q 013919 124 LISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATIL 203 (434)
Q Consensus 124 ~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~~ 203 (434)
+..+..++.+.....++....++.+.+.-. .....+..+...+.+.+...|.-..+...+.++++..
T Consensus 131 lf~~f~~~~lilV~avF~~v~a~~~~~~p~-----------~~~~~~~~I~~Ai~~G~~~y~~~~~~~~~t~i~vvll-- 197 (376)
T PF02554_consen 131 LFLIFIFFLLILVIAVFADVVANTFVNSPW-----------AATSSLLFIPIAILFGLLVYKRGGNLGPATIIGVVLL-- 197 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccChh-----------HHHHHHHHHHHHHHHhHhheecCCchHhhHHHHHHHH--
Confidence 999999998888888888877777654211 1122333444455555555444444555555544322
Q ss_pred HHHhhhhcccccccccCCCCccccccchhhHHHHHHHhccCccchhhHHhhccchhhhHHHH
Q 013919 204 IVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKAL 265 (434)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~ 265 (434)
...+......+. . . . -....-.+.+.|.....+.|+-.-+.++.-.....
T Consensus 198 -~~~v~~G~~~p~---~--~----~--~~~~W~~ii~~Y~~iAs~lPVw~Llqprdyl~~~~ 247 (376)
T PF02554_consen 198 -LLAVWLGMYFPI---S--L----L--SVTTWIIIIFIYYFIASVLPVWKLLQPRDYLNGFL 247 (376)
T ss_pred -HHHHHhhhhccc---c--c----C--cHHHHHHHHHHHHHHHHHhhHHHHhCchHHHHHHH
Confidence 222221111110 0 0 1 11233346777777777778776665333333333
No 76
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=97.81 E-value=0.041 Score=54.03 Aligned_cols=282 Identities=12% Similarity=0.117 Sum_probs=136.2
Q ss_pred CCHHHHHHHhcccchhhH---HHHHHHHHHHHHHHHHHHHhhh-hhhhhcCCCCCCCCCcccCchhHHHHHHHHHHh---
Q 013919 107 TTYPDIGEAAFGKYGRLL---ISVLLYTELYSYCVEFIILEGD-NLTSLFPGASLDWPGFQLDSTHLFGILTALIVL--- 179 (434)
Q Consensus 107 ~~y~~l~~~~~G~~~~~~---~~~~~~~~~~g~~~~y~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--- 179 (434)
-+|+...|..||-+|..+ ......+.-+|..+-.--..-+ .+....+....+.+..+.........++..++.
T Consensus 103 IpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~l~ 182 (497)
T COG1953 103 IPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFWVLQ 182 (497)
T ss_pred CCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHHHHH
Confidence 699999999999877533 3344444444544332221111 123333332211110101111112222222222
Q ss_pred hhhccccCchhhHhhHHHHHHHHHHHHhhhhcc-ccccc-c-cCCCC----cccc-ccchhhHHHHHHHhc-cCccchhh
Q 013919 180 PTIWLRDLRVISYLSATGVVATILIVLCVLFLG-TIEGI-G-FHPTG----QVVK-WSGMPFAIGIYGFCY-SGHSVFPN 250 (434)
Q Consensus 180 pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~~~~-~~~~~-~-~~~~~----~~~~-~~~~~~~~~~~~faf-~~~~~i~~ 250 (434)
-++..+..+.++++-..+-..+.+......+.. ...+. + ..+.+ ...+ +..+..+.....=.| ...-|+|+
T Consensus 183 ~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~D 262 (497)
T COG1953 183 LLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIPD 262 (497)
T ss_pred HHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCch
Confidence 234556888888887777665555444433322 22111 0 11111 1111 112222222222222 25678899
Q ss_pred HHhhccchhhhHHHHHHHHHHHHHHHHHHH----hHHHHhhcCC--chhhhhhcCCCchhHH-HHHHHHHHHHHhhhhcc
Q 013919 251 IYQSMADKTKFTKALITCFALCVLIYGGVA----VMGFLMFGQG--TLSQITLNMPPHAFAS-KVAVWTTVINPFTKYAL 323 (434)
Q Consensus 251 i~~~m~~p~~~~~~~~~s~~~~~~~Y~~~g----~~gy~~fg~~--~~~~il~~~~~~~~~~-~v~~~~~~~~~~~s~pl 323 (434)
..+.-|+|++-.+--.++..+.+.+.-++| ..++..||+. .+.++..+++++.... .....+.+.++-+...-
T Consensus 263 FsRfa~s~~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~~iati~~Ni~a 342 (497)
T COG1953 263 FTRFAKSQKAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTFAVATISTNIAA 342 (497)
T ss_pred hhcccCChhhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHHHHHHHhhhHHh
Confidence 999999988655545555555555555554 4466779988 4456778887664443 22223333333344445
Q ss_pred hhcchHHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHHHHHHhh
Q 013919 324 LMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMP 388 (434)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~l~G~~~~~~~~~ilP 388 (434)
+..+.-.-+..++|+.-..+|...+...+.+...+.-+=..-..+...++..|++-+++...++-
T Consensus 343 N~vsp~~D~s~l~Pk~in~krg~liaA~ial~~~PW~l~~s~s~f~~~L~~yg~~LgpiaGVmia 407 (497)
T COG1953 343 NIVSPGYDLSALFPKYINIKRGGLIAAIIALLICPWNLLESSSSFTTFLGSYGVFLGPIAGVMIA 407 (497)
T ss_pred ccCChHHHHHHhcccccchhhhHHHHHHHHHHHcChHHHcCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666778888764211221111222222222222222225667777667776665555543
No 77
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.73 E-value=0.055 Score=52.94 Aligned_cols=149 Identities=14% Similarity=0.175 Sum_probs=88.8
Q ss_pred CCCchHHHHHHHHHhhhccc-cchhHHHHHhhcHHHHHHHHHH---HHHHHHHHHHHHHhhhhCCCCCCH-----HHHHH
Q 013919 44 HGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLLLF---AVVCCYTASLMRYCFESKEGITTY-----PDIGE 114 (434)
Q Consensus 44 ~~~s~~~~~~~l~~~~iG~G-il~lP~a~~~~G~~g~~~l~~~---~~~~~~~~~~l~~~~~~~~~~~~y-----~~l~~ 114 (434)
++.|.+|+.+....+.+|.| ++++|.+.+..|.-++..+-+. +..+.|.-..+....++++++++| ..+-+
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~~ 124 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIKK 124 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHHH
Confidence 34899999999999999998 9999999776664364444333 333333333343333434454447 78888
Q ss_pred HhcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhh
Q 013919 115 AAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLS 194 (434)
Q Consensus 115 ~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s 194 (434)
...|||.+.+..+....++...+.......++.+++.++ . +.+...+...++........++.+..++
T Consensus 125 gl~~k~lg~lfa~~~i~~f~~~~~~Q~nsi~~~~~~~~~-~-----------~~~v~~i~l~~l~~~vi~GGik~Ia~v~ 192 (425)
T TIGR00835 125 GLGMRWLAVLFAVFLIASFGIGNMVQANAIASALSNAFN-V-----------PKLVTGIVLTVLTALIIFGGLKRIAKIS 192 (425)
T ss_pred HhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcC-C-----------cHHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 888888777666663233222344455555666654331 0 1223233333333344556888888888
Q ss_pred HHHHHHHHHH
Q 013919 195 ATGVVATILI 204 (434)
Q Consensus 195 ~~~~~~~~~~ 204 (434)
..-+......
T Consensus 193 ~~lvP~m~~~ 202 (425)
T TIGR00835 193 SVVVPFMALL 202 (425)
T ss_pred HHHHHHHHHH
Confidence 7665544433
No 78
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=97.64 E-value=0.07 Score=51.78 Aligned_cols=233 Identities=14% Similarity=0.124 Sum_probs=110.1
Q ss_pred CchHHHHHHHHHhhhccc-cchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhh----hCCCCCCHHHHHHHhcccc
Q 013919 46 CSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFE----SKEGITTYPDIGEAAFGKY 120 (434)
Q Consensus 46 ~s~~~~~~~l~~~~iG~G-il~lP~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~----~~~~~~~y~~l~~~~~G~~ 120 (434)
.|...-+....++.+|-| +.-.|+..++.|..+.++.-+...+..---.++.|..- +....++|.++.. +|+
T Consensus 9 ~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~---~~~ 85 (439)
T COG0733 9 SSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAP---KKK 85 (439)
T ss_pred hhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHHHHHHHHHhhhhcCCChhHHHHHhcc---Ccc
Confidence 677888999999999999 77899998877766433333333333333333444321 1333456666654 344
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcC----CCCCCCC---C---cccCchh--HHHHHHHHHHhhhhccccCc
Q 013919 121 GRLLISVLLYTELYSYCVEFIILEGDNLTSLFP----GASLDWP---G---FQLDSTH--LFGILTALIVLPTIWLRDLR 188 (434)
Q Consensus 121 ~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~----~~~~~~~---~---~~~~~~~--~~~~~~~~i~~pl~~~~~~~ 188 (434)
+++ .........+..+.-|.++.+=.+..+.. .+..+.. . ...++.. ....+...++.-+...|.++
T Consensus 86 ~~~-~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~GV~ 164 (439)
T COG0733 86 WEW-IGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRGVK 164 (439)
T ss_pred chh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhHH
Confidence 333 22222333334444444444433222211 1110000 0 0011111 11111112222222334443
Q ss_pred h-hhHhhHHHHHHHHHHHHhhhhccc-ccc----cccCCCCc---cccccchhhHHHHHHHhcc-CccchhhHHhhccch
Q 013919 189 V-ISYLSATGVVATILIVLCVLFLGT-IEG----IGFHPTGQ---VVKWSGMPFAIGIYGFCYS-GHSVFPNIYQSMADK 258 (434)
Q Consensus 189 ~-l~~~s~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~---~~~~~~~~~~~~~~~faf~-~~~~i~~i~~~m~~p 258 (434)
+ +-+.+..-+-....+.+.++.+.. .++ .+.--.++ ..|++.+..++|..+|+.+ |...+....+.++|.
T Consensus 165 ~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k~ 244 (439)
T COG0733 165 KGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYLSKK 244 (439)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 3 444444433333333333333222 221 11111122 2336678889999999998 666666666777877
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhH
Q 013919 259 TKFTKALITCFALCVLIYGGVAVM 282 (434)
Q Consensus 259 ~~~~~~~~~s~~~~~~~Y~~~g~~ 282 (434)
++..+........-..+=++.|+.
T Consensus 245 ~~l~~sa~~v~~~n~~~s~lAGl~ 268 (439)
T COG0733 245 SDLVSSALSIVLLNTLISLLAGLV 268 (439)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHH
Confidence 787765555554444444444433
No 79
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.58 E-value=0.098 Score=51.87 Aligned_cols=46 Identities=7% Similarity=-0.072 Sum_probs=32.8
Q ss_pred CCCHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 013919 106 ITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSL 151 (434)
Q Consensus 106 ~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~ 151 (434)
.++..|..++-+||+..++..+...+...+.........+--++.+
T Consensus 93 G~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll 138 (439)
T PRK00701 93 GRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLL 138 (439)
T ss_pred CCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999988887776666666666666666555555444
No 80
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.57 E-value=0.09 Score=51.31 Aligned_cols=362 Identities=13% Similarity=0.079 Sum_probs=162.6
Q ss_pred CchHHHHHHHHHhhhccccchhHHHH-HhhcHH-HHHHHHHHHHHHHHHHHHH-HHhhhhCCCCCCHHHHHHHhcccchh
Q 013919 46 CSFTQTIFNGINVMAGVGLLSTPYTV-KEAGWA-SLVVLLLFAVVCCYTASLM-RYCFESKEGITTYPDIGEAAFGKYGR 122 (434)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~lP~a~-~~~G~~-g~~~l~~~~~~~~~~~~~l-~~~~~~~~~~~~y~~l~~~~~G~~~~ 122 (434)
.......+....+-+|.|=++--... ++.|+- .++. +...+..+..+.+ .|. ...++ ++..|..++.++|+..
T Consensus 17 l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll~vi--lls~l~~~~~Q~~~arL-givTG-~~laq~ir~~y~~~~~ 92 (416)
T COG1914 17 LALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLLWVI--LLSNLMAYILQELSARL-GIVTG-KGLAEAIRERYLPGLG 92 (416)
T ss_pred HHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHhC-CcHHHHHHHHccchHH
Confidence 44455556666666676655444333 455554 2222 2222222222222 222 22333 6788888888999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHHHHHH
Q 013919 123 LLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATI 202 (434)
Q Consensus 123 ~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~ 202 (434)
++..+...+....++++.....+--++-++.- ....-.+++++..+-....++.+.+-.+...-.+.+.
T Consensus 93 ~~~~~~~~i~~~at~iae~~G~aial~ll~~i-----------p~~~g~iItav~~~iil~~~~~r~~E~~v~~l~~~~~ 161 (416)
T COG1914 93 ILLWILAEIAGIATDIAEVAGIAIALNLLFGI-----------PLIIGAVITAVDVLIILLLKGYRLLERVVLILGLVLV 161 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 99998888888888888888777777766532 1222333344444433334445555444432222222
Q ss_pred HHHHhhhhcccccccc--cC--CCCccccccchhhHHHHH------HHhccCccchhh-HHhhccchhhhH---HHHHHH
Q 013919 203 LIVLCVLFLGTIEGIG--FH--PTGQVVKWSGMPFAIGIY------GFCYSGHSVFPN-IYQSMADKTKFT---KALITC 268 (434)
Q Consensus 203 ~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~------~faf~~~~~i~~-i~~~m~~p~~~~---~~~~~s 268 (434)
..+........ +.++ .. ..++..+.......++++ --.|.++..+-+ ..++-+++++.+ .-..++
T Consensus 162 i~~~~~~~~~~-p~~~~~~~~~f~P~~~~~~~l~~ii~ilGaTVmP~i~y~~s~~v~~~~~~~~~~~~~~~~~~~d~~i~ 240 (416)
T COG1914 162 ILFVYVAFVAP-PPWGEVAKGDFLPSSPWTEALLLIIAILGATVMPHILYLHSSLVQDAGIKGEENLRALRYSRIDTIIG 240 (416)
T ss_pred HHHHHHHhhcC-CCHHHHhccCCCCCCcchhHHHHHHHHhccchhHHHHHhhcceeccccccchhHHHHHHHHHHHHHHH
Confidence 22222221111 1111 00 111111111122222221 111112221211 100111111222 233444
Q ss_pred HHHHHHHHHHHHhHHHHhhc-CCchh---hhhhc--C--C-CchhHHHHHHHHHHHHHhhhhcchhcchHHHHHhhcCCC
Q 013919 269 FALCVLIYGGVAVMGFLMFG-QGTLS---QITLN--M--P-PHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAG 339 (434)
Q Consensus 269 ~~~~~~~Y~~~g~~gy~~fg-~~~~~---~il~~--~--~-~~~~~~~v~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~ 339 (434)
+....++...+-......|. ++... +...- . | -++....+--+..+.+-..+-....+.-...++...+..
T Consensus 241 ~~~a~lv~~ail~~aa~~~~~~~~~~~~~~~~~a~~~l~~~~G~~~~~lF~v~llasg~~s~~~~~~a~~~~~~g~~~~~ 320 (416)
T COG1914 241 MIIALLVNLAILIVAAAGFHNSGPNQDVADAYDAYLLLAPLLGSAAFVLFGVALLAAGLSSTVVATYAGQIVMEGFLNWR 320 (416)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCccccccchHHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHhhhccc
Confidence 44444444444444444442 22211 11110 0 1 011111111111111222222222223333344444322
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHHHHHHhhHHHHHHHhcc-----ccchhhHhhhHHHHHH
Q 013919 340 ISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILGR-----KATRTQIVSSTAIAVL 414 (434)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~l~G~~~~~~~~~ilP~l~~l~~~~~-----~~~~~~~~~~~~~~~~ 414 (434)
.+++.+|...|......+..+.....+...++.+.+.+.+..+-+..++++.+..+|+ +.++|.++..|.+.++
T Consensus 321 -~~~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~~mg~~~~~~~~~~~~~~v~~~ 399 (416)
T COG1914 321 -IPLWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKKLMGDYKNPRWLTVLGWIVVIL 399 (416)
T ss_pred -CchHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhcccchHHHHHHHHHHHHH
Confidence 2355666777766666656665555599999999999988887777777777776554 2234444555555444
Q ss_pred HHHHHHHHHH
Q 013919 415 GVICAILGTF 424 (434)
Q Consensus 415 g~~~~v~g~~ 424 (434)
=..+.+.-.+
T Consensus 400 i~~L~i~li~ 409 (416)
T COG1914 400 IVALNIILLV 409 (416)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 81
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=97.37 E-value=0.012 Score=57.94 Aligned_cols=105 Identities=15% Similarity=0.206 Sum_probs=79.1
Q ss_pred CchHHHHHHHHHhhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcccchhhH
Q 013919 46 CSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLL 124 (434)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~ 124 (434)
.+.+..+.+=..++-|+|.+-=|.--++.||. |.+.+++-+++.---.-.++-..+..++.+|.+|++++..|+..+.+
T Consensus 52 tnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~a~~~ 131 (575)
T COG1966 52 TNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRTAKVF 131 (575)
T ss_pred CCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhhhHHHH
Confidence 66688888999999999999999999999998 77776655544444444444433334455899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh
Q 013919 125 ISVLLYTELYSYCVEFIILEGDNLTS 150 (434)
Q Consensus 125 ~~~~~~~~~~g~~~~y~i~~~~~~~~ 150 (434)
..+...+.......++.....+.+.+
T Consensus 132 ~~~~~l~iliiv~Avfa~vv~~~l~~ 157 (575)
T COG1966 132 FLLLALILLILVGAVFAAVIAKLLAN 157 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 98877777766666666666655544
No 82
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=97.23 E-value=0.1 Score=53.23 Aligned_cols=108 Identities=15% Similarity=0.175 Sum_probs=68.4
Q ss_pred CchHHHHHHHHHhhhccccch-hHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhh--CCCCCCHHHHHHHhcccch
Q 013919 46 CSFTQTIFNGINVMAGVGLLS-TPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFES--KEGITTYPDIGEAAFGKYG 121 (434)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~-lP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~--~~~~~~y~~l~~~~~G~~~ 121 (434)
.+......-.+-.+.|.-.+- |-|.+..+|.. +..+..++++.+..|+.-+...+.+ .+...+|.-+.+ .+|+-.
T Consensus 115 Gt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISR-sLGPEF 193 (1075)
T KOG2082|consen 115 GTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISR-SLGPEF 193 (1075)
T ss_pred ceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEec-ccCccc
Confidence 344444455556666655433 67888889988 8888888888888888888766532 344567765554 556654
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhh-hcCC
Q 013919 122 RLLISVLLYTELYSYCVEFIILEGDNLTS-LFPG 154 (434)
Q Consensus 122 ~~~~~~~~~~~~~g~~~~y~i~~~~~~~~-~~~~ 154 (434)
+--+.++.++-.-....-|+...-|.+.. ++|.
T Consensus 194 GgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~ 227 (1075)
T KOG2082|consen 194 GGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFPA 227 (1075)
T ss_pred cceeeehhhhhhHHHHHHHHHhHHHHHHHHHccH
Confidence 45555555555545556677766666544 4443
No 83
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.19 E-value=0.013 Score=58.94 Aligned_cols=56 Identities=13% Similarity=0.143 Sum_probs=44.3
Q ss_pred cchhhHHHHHHHhccCccchhhHHhhccchh-hhHHHHHHHHHHHHHHHHHHHhHHH
Q 013919 229 SGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFALCVLIYGGVAVMGF 284 (434)
Q Consensus 229 ~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~s~~~~~~~Y~~~g~~gy 284 (434)
.++...+++++-+-.|...=...-.|+|+|+ .+||-...+....+.+|+++.+.--
T Consensus 294 ~~F~~~FgV~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~ 350 (945)
T KOG1288|consen 294 EDFASTFGVFFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMG 350 (945)
T ss_pred eehhhhheeeeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhc
Confidence 4566677777766666666667788999998 5999999999999999998776543
No 84
>PRK15015 carbon starvation protein A; Provisional
Probab=97.00 E-value=0.045 Score=55.36 Aligned_cols=104 Identities=13% Similarity=0.166 Sum_probs=78.6
Q ss_pred CchHHHHHHHHHhhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcccchhhH
Q 013919 46 CSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLL 124 (434)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~ 124 (434)
.+.+-.+.+=..++-|+|.+-=|..-++.||. +.+.+++-.++.---.-...-..+..++.+|.+|++++..|++++.+
T Consensus 83 t~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~GrSig~ia~~~iG~~~~~l 162 (701)
T PRK15015 83 TDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVI 162 (701)
T ss_pred CCccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecCCCccHHHHHHHHhhHHHHHH
Confidence 45577888999999999999999888899999 87777654444333333333333334455899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Q 013919 125 ISVLLYTELYSYCVEFIILEGDNLT 149 (434)
Q Consensus 125 ~~~~~~~~~~g~~~~y~i~~~~~~~ 149 (434)
..+..++.+.....++..+..+.+.
T Consensus 163 fli~i~~iliiviAvfalvvv~al~ 187 (701)
T PRK15015 163 ALVACFMIMVIILAVLAMIVVKALT 187 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9988888877777777777776663
No 85
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=96.74 E-value=0.83 Score=46.65 Aligned_cols=68 Identities=24% Similarity=0.281 Sum_probs=41.3
Q ss_pred CchHHHHHHHHHhhhccc-cchhHHHHHhhc-HHHHH----HHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHH
Q 013919 46 CSFTQTIFNGINVMAGVG-LLSTPYTVKEAG-WASLV----VLLLFAVVCCYTASLMRYCFESKEGITTYPDIGE 114 (434)
Q Consensus 46 ~s~~~~~~~l~~~~iG~G-il~lP~a~~~~G-~~g~~----~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~ 114 (434)
.|..+-+...++..+|-| +.-.|+-..+-| ..-++ .+++.++-..+.=..+.+..+ .+..+.|.++..
T Consensus 5 ~~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG~~Fli~y~~~~~~~giP~~~lE~~lGq~~~-~~~~~~~~~~~p 78 (523)
T PF00209_consen 5 SSKIGFILACIGYAVGLGNIWRFPYLCYENGGGAFLIPYLLFLLLVGIPLLYLELALGQYSR-SGPIGAWKRLCP 78 (523)
T ss_dssp S-HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TTSHHHS-HHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc
Confidence 456788889999999999 778998876555 33332 333445555555556666654 333344545543
No 86
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=96.69 E-value=0.71 Score=45.13 Aligned_cols=145 Identities=14% Similarity=0.146 Sum_probs=80.8
Q ss_pred ccCCCCCchHHHHHHHHHhhhccc-cchhHHHHHhhcHHHHHHHHH---HHHHHHHHHHHHHHhhhhCCCCCCH----HH
Q 013919 40 LPIAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLLL---FAVVCCYTASLMRYCFESKEGITTY----PD 111 (434)
Q Consensus 40 ~~~~~~~s~~~~~~~l~~~~iG~G-il~lP~a~~~~G~~g~~~l~~---~~~~~~~~~~~l~~~~~~~~~~~~y----~~ 111 (434)
++.+++.|-+|+...-+.+.+|.| +-+..-|++..|..++.++-+ .+..+-|+=-.|....|+..++.+| .-
T Consensus 13 ~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~y 92 (416)
T PF01235_consen 13 KEEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMY 92 (416)
T ss_pred CCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHH
Confidence 344556999999999999999999 777888998777665555444 4444445545555554433332222 34
Q ss_pred HHHHhcccc-hhhHHHHHHHHHHHHH--HHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCc
Q 013919 112 IGEAAFGKY-GRLLISVLLYTELYSY--CVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLR 188 (434)
Q Consensus 112 l~~~~~G~~-~~~~~~~~~~~~~~g~--~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~ 188 (434)
+.++.+|++ .+.+..++. +..++. .......+++.+++.++- +.+...+...++..+..+..+|
T Consensus 93 yi~~gl~~k~la~~fai~~-~~~~~~~~~~~Q~nsi~~~~~~~f~i------------~~~~~gi~l~~l~~~vi~GGik 159 (416)
T PF01235_consen 93 YIEKGLGSKWLAILFAIFL-IIAFGIGFNMVQANSIADALSSAFGI------------PPWITGIILAILVALVIFGGIK 159 (416)
T ss_pred HHHHHhccchHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHhhccc------------cHHHHHHHHHHHHHHHHHcchh
Confidence 566767654 333444432 222222 344444455555443321 1222233333444455566777
Q ss_pred hhhHhhHHH
Q 013919 189 VISYLSATG 197 (434)
Q Consensus 189 ~l~~~s~~~ 197 (434)
++..++..-
T Consensus 160 rI~~v~~~l 168 (416)
T PF01235_consen 160 RIAKVSEKL 168 (416)
T ss_pred HHHHHHHHH
Confidence 777766543
No 87
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=96.05 E-value=1.7 Score=42.69 Aligned_cols=212 Identities=12% Similarity=0.099 Sum_probs=118.9
Q ss_pred ccchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcc-cchhhHHHHHHHHHHHHHHHHHH
Q 013919 63 GLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG-KYGRLLISVLLYTELYSYCVEFI 141 (434)
Q Consensus 63 Gil~lP~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G-~~~~~~~~~~~~~~~~g~~~~y~ 141 (434)
..+++|..+.-.|+-|++..+-...--.....++.+-.| .-+..|+.|+...-++ ++.|.+..+.-.+..+...++.+
T Consensus 61 SflGiag~I~~~GYdG~~Y~iG~~~Gy~i~~fL~A~~LR-k~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQm 139 (529)
T COG4147 61 SFLGIAGLIFISGYDGLIYSIGWTGGYPILLFLIAEYLR-KLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQM 139 (529)
T ss_pred hhhchhHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHH
Confidence 345566555555554444333222222222334455544 5566899998876665 45777777766666667778888
Q ss_pred HHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHHHHHHHHHHh----hhhcccccc-
Q 013919 142 ILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLC----VLFLGTIEG- 216 (434)
Q Consensus 142 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~----~~~~~~~~~- 216 (434)
.-.+..+..+++-. .. .-.++..+++.-......++...|++.+--+..+...+. +.+....+.
T Consensus 140 vGaG~li~~l~gv~----------~~-vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~ 208 (529)
T COG4147 140 VGAGLLISLLLGVP----------YH-VGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPN 208 (529)
T ss_pred HhhHHHHHHHhCCC----------ce-eehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 88888888887531 11 222344455555566678999999887765433322221 111111100
Q ss_pred ---------c-cc---CCCCccccccchhhHHHHHHHhccCccchhhHHhhc---cchhhhHHHHHHHHHHHHHHHHHHH
Q 013919 217 ---------I-GF---HPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSM---ADKTKFTKALITCFALCVLIYGGVA 280 (434)
Q Consensus 217 ---------~-~~---~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m---~~p~~~~~~~~~s~~~~~~~Y~~~g 280 (434)
. .+ ...++-...++....++..+---.|....|++.-.. .+-|+-+|.+.++......+|+..-
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi~~~ 288 (529)
T COG4147 209 PLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAGLPHILMRFFTVPDAKEARKSVFWATGFIGIFYILTP 288 (529)
T ss_pred hHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHccCCCCeEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 001111122344444444433334555566655432 3456889999999999999999887
Q ss_pred hHHHHh
Q 013919 281 VMGFLM 286 (434)
Q Consensus 281 ~~gy~~ 286 (434)
..|+.+
T Consensus 289 ~ig~~A 294 (529)
T COG4147 289 IIGAGA 294 (529)
T ss_pred HHHHHH
Confidence 777764
No 88
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=95.87 E-value=1.9 Score=41.74 Aligned_cols=81 Identities=17% Similarity=0.190 Sum_probs=51.9
Q ss_pred CCCHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhc--
Q 013919 106 ITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIW-- 183 (434)
Q Consensus 106 ~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~-- 183 (434)
.++..|..++.+||+..+...+...+.......+.....+.-+..++ +.+ ...+..+..+..+-+..
T Consensus 41 g~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~-g~~----------~~~~~~~~~~~~~~ll~~~ 109 (358)
T PF01566_consen 41 GKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLF-GIP----------LWIWVLLVAVIAILLLWLS 109 (358)
T ss_pred CCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCC----------cHHHHHHHHHHHHHHHHHH
Confidence 36888888999999988888888877777777777777766666554 221 12333333333333333
Q ss_pred cccCchhhHhhHHH
Q 013919 184 LRDLRVISYLSATG 197 (434)
Q Consensus 184 ~~~~~~l~~~s~~~ 197 (434)
.++.+.+-++...-
T Consensus 110 ~~~y~~~E~~~~~l 123 (358)
T PF01566_consen 110 SGGYRRLERILKVL 123 (358)
T ss_pred hccchHHHHHHHHH
Confidence 56677766665543
No 89
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=95.79 E-value=0.025 Score=56.20 Aligned_cols=204 Identities=15% Similarity=0.172 Sum_probs=120.2
Q ss_pred chhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhh--CCCCCCHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHH
Q 013919 65 LSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFES--KEGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFI 141 (434)
Q Consensus 65 l~lP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~--~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~ 141 (434)
|=+++...|+|.. +++++.+...++..|..--.....+ ..+...| -+..+.+|+..+--..+++.+.+.-.+..|.
T Consensus 51 lrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~y-flis~slg~efggsigiIy~f~~aVa~am~~ 129 (643)
T KOG2083|consen 51 LRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVY-FLISRSLGPEFGGSIGIIYAFANAVATAMYV 129 (643)
T ss_pred hhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEE-EEEEecccccccchhHHHHHHHHHHHHHHhh
Confidence 3478999999999 9888877777776666544332221 1222333 3345566776666667777777777888899
Q ss_pred HHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHHHHHHHHHHhh--hhcccc--cc-
Q 013919 142 ILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCV--LFLGTI--EG- 216 (434)
Q Consensus 142 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~--~~~~~~--~~- 216 (434)
+.++|.+.++++..+.. ..+. ...++.++++.++.. ...|...+-++..+++.+.+ ...+.. ++
T Consensus 130 vgfaEsv~~l~~~~s~~----~i~g---i~~vt~~ill~i~~a----g~~w~~k~q~~ll~il~iai~~f~~gs~~~~~~ 198 (643)
T KOG2083|consen 130 VGFAESVAHLFETESKE----MIDG---IGSVTVLILLAINVA----GVEWEAKLQIVLLLILLIAIADFLVGSFFSPNE 198 (643)
T ss_pred hhHHHHHHHHHHhccHH----Hhcc---hhHHHHHHHHHhhhc----cchhHHHHHHHHHHHHHHHHHHhhhhhccChhh
Confidence 99999999998764321 1111 223344444444433 22333333222222211111 111111 00
Q ss_pred -----cccC----CCCcccccc---chhhHHHHHHHhccCccchhhHHhhccchh-hhHHHHHHHHHHHHHHHHHHH
Q 013919 217 -----IGFH----PTGQVVKWS---GMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFALCVLIYGGVA 280 (434)
Q Consensus 217 -----~~~~----~~~~~~~~~---~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~s~~~~~~~Y~~~g 280 (434)
..++ .++...++. .++..+++++=+..|.-.=..+.+++|+|+ ..|+....+......+|+.+.
T Consensus 199 ~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~Pq~~IP~GaL~Ai~vst~~yl~~i 275 (643)
T KOG2083|consen 199 FSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLKDPQKAIPLGALLAIGVSTLLYLIFI 275 (643)
T ss_pred hcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCCCCchhhcccchhhhhhhhhhhhhhhh
Confidence 0111 112222333 677777887777777777778889999998 689999999999999996553
No 90
>PHA02764 hypothetical protein; Provisional
Probab=95.71 E-value=1.7 Score=40.26 Aligned_cols=90 Identities=13% Similarity=-0.036 Sum_probs=66.2
Q ss_pred CCCCchHHHHH-HHHHhhhccccchhHHHHHhh--cHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhccc
Q 013919 43 AHGCSFTQTIF-NGINVMAGVGLLSTPYTVKEA--GWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK 119 (434)
Q Consensus 43 ~~~~s~~~~~~-~l~~~~iG~Gil~lP~a~~~~--G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~ 119 (434)
-|+.|.+++++ |+.+...|.+ .+.|+-++.. |...+..+++.++++...+.+..+...+.|+...-....++++|+
T Consensus 11 VREvs~lDAF~~Nl~~m~~Gi~-Is~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVYISRAFGP 89 (399)
T PHA02764 11 IKSFNILDIFSINLLYMGILSG-ISYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAYIRTAFSS 89 (399)
T ss_pred eeeccHHHHHHHHHHhhccchh-HHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEhHHhhCc
Confidence 45578888888 4444444443 3666644433 555677888889999999999999998888887777889999999
Q ss_pred chhhHHHHHHHHHH
Q 013919 120 YGRLLISVLLYTEL 133 (434)
Q Consensus 120 ~~~~~~~~~~~~~~ 133 (434)
+.+.+..+..+...
T Consensus 90 ~~GFLvG~a~WLtl 103 (399)
T PHA02764 90 KFYTIFGISLWLTY 103 (399)
T ss_pred cHHHHHHHHHHHHH
Confidence 98888777666543
No 91
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=94.86 E-value=0.39 Score=48.58 Aligned_cols=233 Identities=15% Similarity=0.087 Sum_probs=121.1
Q ss_pred CCCCCchHHHHHHHHHhhhccc-cchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhccc
Q 013919 42 IAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK 119 (434)
Q Consensus 42 ~~~~~s~~~~~~~l~~~~iG~G-il~lP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~ 119 (434)
-.|+..++...+.+..+.+|++ ++++|...++.|.. ....+.... .....++...-. ....+..+..|+-++.||+
T Consensus 43 ~gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~~~~l~-~~~~~~~~f~Pv-f~~~~v~~~~eYl~~Rf~~ 120 (585)
T KOG2349|consen 43 GGRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFEWNALL-SVLLLGWIFIPV-FYRLGVTTMYEYLEKRFGG 120 (585)
T ss_pred cCCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHHHHHHH-HHHhhheEEEEE-EEecCeeehhHHHHHHhcc
Confidence 3566788888888888888887 78899888877765 332222111 111111222222 1244667888999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhhHHHHH
Q 013919 120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (434)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~ 199 (434)
..+....+...++.+.-..+++..=+-.+.+..+ +........ ..+++.-......++..-|.=.+-..
T Consensus 121 ~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg--------~~~~l~~~~---~~~ic~~YT~~GGlkaVi~TDv~Q~~ 189 (585)
T KOG2349|consen 121 RVRYLATLSFILMIFLYLPVDMYAPALAINQVTG--------INLYLIVVI---LGLICVFYTALGGLKAVIWTDVVQTV 189 (585)
T ss_pred cchhhHHHHHHHHHHhheeeeEeehHHHHHHHhc--------cCceeehHH---HHHHHHHHHHhcCeeEEEEhhHHHHH
Confidence 9777777766666544444443333333334332 111111111 11222222223344444444433333
Q ss_pred HHHHHHHhhhhcccccc------------------c---ccCCCCccccccchhhHHHHHHHhccCccchhhHHhhccch
Q 013919 200 ATILIVLCVLFLGTIEG------------------I---GFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADK 258 (434)
Q Consensus 200 ~~~~~~~~~~~~~~~~~------------------~---~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p 258 (434)
..+.-...+...+.... . ..++.....-|.-++.....-...|+.+.+..+=+-.+|+-
T Consensus 190 iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~vnQ~~VQR~lsl~sl 269 (585)
T KOG2349|consen 190 IMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYGVNQLIVQRYLSLPSL 269 (585)
T ss_pred HHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHhhhHHHHhHHhccccH
Confidence 33332333333221110 0 01111111223334445555666777777766655566677
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 013919 259 TKFTKALITCFALCVLIYGGVAVMGFLMF 287 (434)
Q Consensus 259 ~~~~~~~~~s~~~~~~~Y~~~g~~gy~~f 287 (434)
++.++.........++...+....|...|
T Consensus 270 k~ak~~~~~~~~~~~l~~~~~~~~G~i~~ 298 (585)
T KOG2349|consen 270 KHAKPSLLLFGYGVLLIMFIMVFVGMIIY 298 (585)
T ss_pred HHhhhhhhhhhhHHHHHHHhhcccceeEe
Confidence 78888888877777777666655555543
No 92
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=93.95 E-value=0.84 Score=44.26 Aligned_cols=51 Identities=16% Similarity=0.335 Sum_probs=45.5
Q ss_pred CCCCCHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCC
Q 013919 104 EGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPG 154 (434)
Q Consensus 104 ~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~ 154 (434)
++..-..+++++.+|+.|+.+..+...+.|++++......++|++.++.++
T Consensus 252 ~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k 302 (378)
T TIGR00796 252 NGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK 302 (378)
T ss_pred CcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344566789999999999999999999999999999999999999998764
No 93
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=93.81 E-value=7.2 Score=38.20 Aligned_cols=319 Identities=14% Similarity=0.117 Sum_probs=161.0
Q ss_pred cCCCCCchHHHHHHHHHhhhccc-cchhHHHHHhhcHHHHHHH---HHHHHHHHHHHHHHHHhhhhCCCCCCHH----HH
Q 013919 41 PIAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVL---LLFAVVCCYTASLMRYCFESKEGITTYP----DI 112 (434)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~G-il~lP~a~~~~G~~g~~~l---~~~~~~~~~~~~~l~~~~~~~~~~~~y~----~l 112 (434)
+.+++.|-+|+...-..+.+|+| +-+..-|.+-.|..++..+ .+.+..+-|.=-.|....+...+...|. -+
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yY 137 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYY 137 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHH
Confidence 44566899999999999999999 6678888887776544333 2556666666666666655343333332 34
Q ss_pred HHHhcccc-hhhHHHHHHHHHHH-HHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchh
Q 013919 113 GEAAFGKY-GRLLISVLLYTELY-SYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVI 190 (434)
Q Consensus 113 ~~~~~G~~-~~~~~~~~~~~~~~-g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l 190 (434)
.++-+|.+ -..+..+...+.+. ..+.+....+++.+++.++. +....-+...++..+.....++++
T Consensus 138 i~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~~------------~~~~~gi~la~l~~~VI~GGi~rI 205 (452)
T COG1115 138 IEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFGI------------PPLVTGIVLALLVALVIFGGIKRI 205 (452)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcCC------------cHHHHHHHHHHHHHHHHHcchHHH
Confidence 55555543 33444433333322 26666777777777776532 123333444445555566788888
Q ss_pred hHhhHHHHHHHHHHHHh--hhhc-ccccccc----------cCCCCcccccc------chhhHHHHHHHhcc-Cccchhh
Q 013919 191 SYLSATGVVATILIVLC--VLFL-GTIEGIG----------FHPTGQVVKWS------GMPFAIGIYGFCYS-GHSVFPN 250 (434)
Q Consensus 191 ~~~s~~~~~~~~~~~~~--~~~~-~~~~~~~----------~~~~~~~~~~~------~~~~~~~~~~faf~-~~~~i~~ 250 (434)
..++..-+-......+. +.+. ...+..+ ...+....... .+..++.--.||=+ |....|.
T Consensus 206 a~v~~~vVPfMA~~Yi~~~~~Ii~~n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNEAGmGsap~ 285 (452)
T COG1115 206 AKVSSKVVPFMAILYVLVALVIIVLNISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNEAGMGSAPI 285 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHHhhcccccCCcchh
Confidence 88886655433332222 1111 1111110 11111111111 22334444566665 6677777
Q ss_pred HHhh--ccchhhhHHHHHHHH-----HHHHHHHHHHHhHHHHhhcCCchhh------hhhcCCCchhHHHHHHHHHHHHH
Q 013919 251 IYQS--MADKTKFTKALITCF-----ALCVLIYGGVAVMGFLMFGQGTLSQ------ITLNMPPHAFASKVAVWTTVINP 317 (434)
Q Consensus 251 i~~~--m~~p~~~~~~~~~s~-----~~~~~~Y~~~g~~gy~~fg~~~~~~------il~~~~~~~~~~~v~~~~~~~~~ 317 (434)
.+.+ -++|.|=.-+-..+. ++|++--+++=+.|.+..++..++. ....+++ +-.....+.+.+-.
T Consensus 286 aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g~--~G~~fv~i~l~lFa 363 (452)
T COG1115 286 AAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLGS--WGSYFVAIALFLFA 363 (452)
T ss_pred HHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcCc--cHHHHHHHHHHHHH
Confidence 6665 457754333333333 3344333333333333333321221 1122332 22222223333333
Q ss_pred hhhhcchhcchHHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHHHhh-cccHHHHHHHHhHH
Q 013919 318 FTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAFL-LPFFSLVMALIGSL 378 (434)
Q Consensus 318 ~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-~p~~~~~~~l~G~~ 378 (434)
.+|.--..+-..++++.+.. +++.-...|.+.++....=+.. .|....+.++.-++
T Consensus 364 fTTIlg~yyyge~~~~fl~~-----~k~~~~~~r~~~l~~v~~Ga~~~l~~vW~laD~~~gl 420 (452)
T COG1115 364 FTTILGWYYYGEKNIEFLFG-----SKKAILLYRLIVLAMVFLGAVLSLDLVWNLADLFMGL 420 (452)
T ss_pred HHHHHHHHHHHHHHHHHHhC-----CchHHHHHHHHHHHHHHHhccccHHHHHHHHHHhchH
Confidence 44554445555666666642 2244455677666665555544 25566666655444
No 94
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=93.71 E-value=0.6 Score=45.82 Aligned_cols=80 Identities=20% Similarity=0.377 Sum_probs=59.6
Q ss_pred CCCCHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhcc
Q 013919 105 GITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWL 184 (434)
Q Consensus 105 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~ 184 (434)
+..=..+++++.+|+.|..+..+...+.|+-+++.....++|++++..++.+ ...+..+..++-+.++..
T Consensus 259 g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~kis----------Y~~~v~i~~i~S~~ian~ 328 (427)
T PF05525_consen 259 GAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPKIS----------YKVWVIIFTIFSFIIANL 328 (427)
T ss_pred HHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----------hHHHHHHHHHHHHHHHHh
Confidence 3345567889999999999999999999999999999999999999987432 334555555555555544
Q ss_pred ccCchhhHhhH
Q 013919 185 RDLRVISYLSA 195 (434)
Q Consensus 185 ~~~~~l~~~s~ 195 (434)
+++.+-.++.
T Consensus 329 -Gl~~Ii~~s~ 338 (427)
T PF05525_consen 329 -GLDQIIKISV 338 (427)
T ss_pred -CHHHHHHHHH
Confidence 5555554443
No 95
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=91.22 E-value=3 Score=40.33 Aligned_cols=80 Identities=23% Similarity=0.368 Sum_probs=59.4
Q ss_pred CCCCHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhcc
Q 013919 105 GITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWL 184 (434)
Q Consensus 105 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~ 184 (434)
+.+=..+.+++.||+.|..+...++.+.|.-+++.....++|+..+..++.+ ...|..+..++-+-+...
T Consensus 261 G~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~~S----------Y~~~v~if~i~sflvan~ 330 (431)
T COG1114 261 GGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPKLS----------YKTWVIIFTLISFLVANL 330 (431)
T ss_pred hHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----------HHHHHHHHHHHHHHHHHh
Confidence 4445667889999999999999999999999999999999999999988542 334555555555555444
Q ss_pred ccCchhhHhhH
Q 013919 185 RDLRVISYLSA 195 (434)
Q Consensus 185 ~~~~~l~~~s~ 195 (434)
+++.+-..|.
T Consensus 331 -GL~~Ii~isv 340 (431)
T COG1114 331 -GLEQIIKISV 340 (431)
T ss_pred -hHHHHHHHHH
Confidence 4444444443
No 96
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=89.51 E-value=29 Score=36.14 Aligned_cols=116 Identities=15% Similarity=0.135 Sum_probs=60.2
Q ss_pred HHHhhhhccccCchhhHhhHHHHHHHHHHHHhhhhcccc-cc----cccCCCC---ccccccchhhHHHHHHHhcc-Ccc
Q 013919 176 LIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTI-EG----IGFHPTG---QVVKWSGMPFAIGIYGFCYS-GHS 246 (434)
Q Consensus 176 ~i~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~---~~~~~~~~~~~~~~~~faf~-~~~ 246 (434)
=++..++..|.+|+.+++..+....--.+.++.++.+.. ++ ...-..+ ...+..-...+...++|+++ |+.
T Consensus 224 Wliv~~~i~KGvks~GKvvY~~a~fPyviL~iLliRgvTL~Ga~~Gi~~~l~~~~~kL~~~~vW~dA~~QiffSlsi~~G 303 (629)
T KOG3660|consen 224 WLIVFFCIWKGVKSSGKVVYFTATFPYVILIVLLIRGVTLPGAGDGINFYLTPDWTKLLDPQVWGDAATQIFFSLSIGFG 303 (629)
T ss_pred HHHHHHHHhhcccccCcEEEEEehhHHHHHHHHHHHHccCCCHHHHHHHHHhhhhHhhcChhhHHHHHHhHHHhHHHHHh
Confidence 345667888999999988876654433333333333321 11 1100011 11233344457777778777 555
Q ss_pred chhhHHhhccchhhhH-----HHHHHHHHHHHHHHHHHHhHHHHhhcCCc
Q 013919 247 VFPNIYQSMADKTKFT-----KALITCFALCVLIYGGVAVMGFLMFGQGT 291 (434)
Q Consensus 247 ~i~~i~~~m~~p~~~~-----~~~~~s~~~~~~~Y~~~g~~gy~~fg~~~ 291 (434)
.+..+....|..++.- ....-+....+.-..++++.|+++.-.++
T Consensus 304 ~li~laSynk~~nN~yrDa~lv~~~~~~tS~~~g~~iFsilGfla~~~~v 353 (629)
T KOG3660|consen 304 GLIALASYNKFNNNCYRDAILVVLLDTITSLLAGFAIFSILGFLAHEQGV 353 (629)
T ss_pred hhheeeeeeccCCcceeeeeeeeecccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5555555555333221 22222333444455667788888875544
No 97
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=87.76 E-value=30 Score=34.17 Aligned_cols=314 Identities=18% Similarity=0.199 Sum_probs=143.1
Q ss_pred hHHHHHHHHHhhhccccchhHHHH-Hhhc--HH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcccchhh
Q 013919 48 FTQTIFNGINVMAGVGLLSTPYTV-KEAG--WA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRL 123 (434)
Q Consensus 48 ~~~~~~~l~~~~iG~Gil~lP~a~-~~~G--~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~ 123 (434)
....-+.+.+-..|+|=|=.|-.. .++| |. +.+.+++.++.--..+.+- .++ . + .++++++++.-.+.+..
T Consensus 5 ~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia--~~~-~-~-~~~~~l~~~v~~~f~~i 79 (427)
T PF05525_consen 5 ILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIA--VAK-S-G-GGIEDLASRVGPKFALI 79 (427)
T ss_pred hhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH--Hhh-c-C-CCHHHHhcccCcHHHHH
Confidence 456667888889999988888766 5666 55 7777766665544433222 211 2 2 28888888664443333
Q ss_pred HHHHHHH-HHHHHH-----HHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhcccc--CchhhHhhH
Q 013919 124 LISVLLY-TELYSY-----CVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRD--LRVISYLSA 195 (434)
Q Consensus 124 ~~~~~~~-~~~~g~-----~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~--~~~l~~~s~ 195 (434)
+..+.+. +-.+.. .++|-+... .+++. + .........++...+.+-++.-|+ ++.++++-.
T Consensus 80 f~~~i~l~IGP~~aiPRtaa~sfe~~i~----p~~~~-~------~~~~~~ifs~iFF~i~~~l~~~p~kivd~iGk~LT 148 (427)
T PF05525_consen 80 FTILIYLSIGPLFAIPRTAAVSFEMGIA----PFFPE-N------SNISLLIFSIIFFAITYLLSLNPSKIVDRIGKFLT 148 (427)
T ss_pred HHHHHHHHHHhcccCcchhhhhHHHhhh----ccCCc-c------cccchhhhhHHHHHHHHHHHhchhhHHHHHHHHHH
Confidence 3322211 111110 122222111 22221 0 011222333333444444443322 233333332
Q ss_pred HHHHHHHHHHHhhhhcccccccccC--CCCcc--c----cc---cchhhHHHHHHHhccCccchhhHHh-hccchhhhH-
Q 013919 196 TGVVATILIVLCVLFLGTIEGIGFH--PTGQV--V----KW---SGMPFAIGIYGFCYSGHSVFPNIYQ-SMADKTKFT- 262 (434)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~----~~---~~~~~~~~~~~faf~~~~~i~~i~~-~m~~p~~~~- 262 (434)
-. .+.....++..+.....+.. ++... . .+ -+...+++.+.|+-.. +-.+.+ ..+|+|+..
T Consensus 149 P~---LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~iI---i~~i~~~g~~~~k~~~~ 222 (427)
T PF05525_consen 149 PI---LLILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGIII---INAIRQKGYKDKKEIKK 222 (427)
T ss_pred HH---HHHHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHH---HHHHHHhCCCCHHHHHH
Confidence 22 22222223333322211111 11111 0 11 1233355555554321 122222 234555433
Q ss_pred ---HHHHHHHHHHHHHHHHHHhHHHHhhc---CCchh-hhhhcCCC---chhHHHHHHHHHHHHHhhhhcchhcchHHHH
Q 013919 263 ---KALITCFALCVLIYGGVAVMGFLMFG---QGTLS-QITLNMPP---HAFASKVAVWTTVINPFTKYALLMNPLARSI 332 (434)
Q Consensus 263 ---~~~~~s~~~~~~~Y~~~g~~gy~~fg---~~~~~-~il~~~~~---~~~~~~v~~~~~~~~~~~s~pl~~~~~~~~~ 332 (434)
++-.++.....++|...+..|...-+ ++.++ .++.+..+ ++.-..+..+.+.++.+++---+...+.+.+
T Consensus 223 ~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf 302 (427)
T PF05525_consen 223 YTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYF 302 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666777777776666543 22332 23322211 1122222333344455555555566778888
Q ss_pred HhhcCCCCCChhHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHHHHHHhhHHHHHHH
Q 013919 333 EELLPAGISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKI 395 (434)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~l~G~~~~~~~~~ilP~l~~l~~ 395 (434)
++..++. +.+.. ..+....++++|.. .++.++++ +...+.++.|...-+..
T Consensus 303 ~~~~~ki---sY~~~---v~i~~i~S~~ian~--Gl~~Ii~~----s~PiL~~iYP~~IvLIl 353 (427)
T PF05525_consen 303 SELFPKI---SYKVW---VIIFTIFSFIIANL--GLDQIIKI----SVPILMFIYPVAIVLIL 353 (427)
T ss_pred HHHhccc---ChHHH---HHHHHHHHHHHHHh--CHHHHHHH----HHHHHHHHhHHHHHHHH
Confidence 8887622 12211 22233444545443 56777766 56778899998877665
No 98
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=86.96 E-value=4.9 Score=39.63 Aligned_cols=75 Identities=15% Similarity=0.179 Sum_probs=57.7
Q ss_pred HHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCc
Q 013919 109 YPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLR 188 (434)
Q Consensus 109 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~ 188 (434)
....+++.+|++++.+..+...+.|+.+++.....++|.+++.++ . +...+..+..++.++++.. +++
T Consensus 267 l~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~-i----------sY~~~v~i~~l~S~~lSn~-G~~ 334 (439)
T PRK15433 267 LHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP-L----------SYRTLVFILGGFSMVVSNL-GLS 334 (439)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C----------cHHHHHHHHHHHHHHHHHh-HHH
Confidence 345678899999999999999999999999999999999999864 1 2345666677777777665 555
Q ss_pred hhhHhhH
Q 013919 189 VISYLSA 195 (434)
Q Consensus 189 ~l~~~s~ 195 (434)
.+-..+.
T Consensus 335 ~II~~s~ 341 (439)
T PRK15433 335 QLIQISV 341 (439)
T ss_pred HHHHHHH
Confidence 5444443
No 99
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=84.29 E-value=46 Score=33.01 Aligned_cols=149 Identities=15% Similarity=0.010 Sum_probs=74.8
Q ss_pred hhhHHHHHHHhccCccchhhHHh-hccchhhhH----HHHHHHHHHHHHHHHHHHhHHHHhhc---CC-chhhhhhcCCC
Q 013919 231 MPFAIGIYGFCYSGHSVFPNIYQ-SMADKTKFT----KALITCFALCVLIYGGVAVMGFLMFG---QG-TLSQITLNMPP 301 (434)
Q Consensus 231 ~~~~~~~~~faf~~~~~i~~i~~-~m~~p~~~~----~~~~~s~~~~~~~Y~~~g~~gy~~fg---~~-~~~~il~~~~~ 301 (434)
...+++.+.|+-.. +..+.+ ..+|+|+.. ++-.++.....++|...+..|-..-+ +. ..+.++.....
T Consensus 196 TMDalaal~Fg~ii---i~~i~~~G~~~~~~~~k~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~ 272 (439)
T PRK15433 196 TMDTLGAMVFGIVI---VNAARSRGVTEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQ 272 (439)
T ss_pred HHHHHHHHHHHHHH---HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHH
Confidence 34466666666432 333333 366776444 44455556666677777766654422 11 12223322211
Q ss_pred ---chhHHHHHHHHHHHHHhhhhcchhcchHHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHhHH
Q 013919 302 ---HAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSL 378 (434)
Q Consensus 302 ---~~~~~~v~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~l~G~~ 378 (434)
++....+..+...+.++++---..+.+.+.+++.++ .+++ ....+....++.+|.+ .++.++++
T Consensus 273 ~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~----isY~---~~v~i~~l~S~~lSn~--G~~~II~~---- 339 (439)
T PRK15433 273 HTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP----LSYR---TLVFILGGFSMVVSNL--GLSQLIQI---- 339 (439)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CcHH---HHHHHHHHHHHHHHHh--HHHHHHHH----
Confidence 122222223334445555555556667777776654 1111 2222333344444433 56666665
Q ss_pred HHHHHHHHhhHHHHHHH
Q 013919 379 LSILVAIIMPSLCFIKI 395 (434)
Q Consensus 379 ~~~~~~~ilP~l~~l~~ 395 (434)
....+.++.|...-+..
T Consensus 340 s~PiL~~iYP~~IvLil 356 (439)
T PRK15433 340 SVPVLTAIYPPCIALVV 356 (439)
T ss_pred HHHHHHHHhHHHHHHHH
Confidence 56778888888766655
No 100
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=83.22 E-value=45 Score=32.08 Aligned_cols=110 Identities=10% Similarity=-0.004 Sum_probs=69.5
Q ss_pred CCCCchHHHHHHHHHhhhccc-cchhHHHHHhhcHH-HHHHHH---HHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhc
Q 013919 43 AHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWA-SLVVLL---LFAVVCCYTASLMRYCFESKEGITTYPDIGEAAF 117 (434)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~G-il~lP~a~~~~G~~-g~~~l~---~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~ 117 (434)
.|+.+-+-..+....+-+++. ..+=|.+-.+.|.. -...++ ..++.-..-+.-+.+.++ ..+.-+..|+-++-+
T Consensus 38 nRsmgg~VlAmt~~aTYisaSSFigGpgaayk~GlgwvlLa~iqvp~~~l~lgvlgkk~~~~ar-~~nAltI~D~l~~RY 116 (473)
T COG4145 38 NRSMGGIVLAMTFTATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLALGVLGKKFAILAR-EYNALTINDLLFARY 116 (473)
T ss_pred cCcccceehhhHHHHHHHHHhhhcCCCcHHHHhchHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HhCCeeHHHHHHHHh
Confidence 345666777777777777766 44557776666643 222221 111111122233333434 556688888887765
Q ss_pred -ccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcC
Q 013919 118 -GKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFP 153 (434)
Q Consensus 118 -G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~ 153 (434)
++.-.++..+.......+..++..+..+..++...+
T Consensus 117 ~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~g 153 (473)
T COG4145 117 QSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALG 153 (473)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHC
Confidence 556678888888888888999999999988888764
No 101
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=81.56 E-value=33 Score=29.34 Aligned_cols=117 Identities=13% Similarity=0.121 Sum_probs=62.6
Q ss_pred HHhhhhcc-cccccccCCCCccccccchhhHHHHHHHhccCccchhhHHhhcc---chhhhHHHHHHHHHHHHHHHHHHH
Q 013919 205 VLCVLFLG-TIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMA---DKTKFTKALITCFALCVLIYGGVA 280 (434)
Q Consensus 205 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~---~p~~~~~~~~~s~~~~~~~Y~~~g 280 (434)
+++..|.. ..++..++.+...+|+-.+...+|.+.. .-+ ..-+++..+ .+++.+|.+....-...++..++|
T Consensus 13 ~lv~~W~~~~rgG~~w~~~~~~Fn~HP~lMv~Gfi~L---~ge-AiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvG 88 (179)
T cd08762 13 VLVVHWNQMWRGGFAWDGSSKNFNWHPVLMVTGMVVL---YGN-AALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIG 88 (179)
T ss_pred HHHHHHHHHcCCccCCCCCCCceeehHHHHHHHHHHH---HHH-HHHhhcccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 33344433 3455566544445666665555444433 222 222233222 356677889988888888888888
Q ss_pred hHHHHhhcCCchhhhhhcCCCchhHHHHHHHHHHHHHhhhhcchhcc
Q 013919 281 VMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNP 327 (434)
Q Consensus 281 ~~gy~~fg~~~~~~il~~~~~~~~~~~v~~~~~~~~~~~s~pl~~~~ 327 (434)
+.....+.++. .+.+.++-..|.-.....++.++-+..+....+|
T Consensus 89 l~avf~~hn~~--~~~nlySlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p 133 (179)
T cd08762 89 LCAVFNFHNVH--HTANLYSLHSWVGICTVALFTCQWVMGFTSFLLP 133 (179)
T ss_pred HHHHHHhcccc--CccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 87766665443 2322222223444344455555665555555555
No 102
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=79.89 E-value=69 Score=32.01 Aligned_cols=288 Identities=15% Similarity=0.121 Sum_probs=129.1
Q ss_pred CCCCCchHHHHHHHHHhhhccccchhHHHHHhhc--HH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCC---CCHHHHHHH
Q 013919 42 IAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAG--WA-SLVVLLLFAVVCCYTASLMRYCFESKEGI---TTYPDIGEA 115 (434)
Q Consensus 42 ~~~~~s~~~~~~~l~~~~iG~Gil~lP~a~~~~G--~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~---~~y~~l~~~ 115 (434)
.+|.=|+++-...=....++.+..-+..+.-+.| |- +++...+. ..+++..+ .....+|. .+++-..|.
T Consensus 52 ~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG---~~~~~~f~--~lns~~G~~yhIsFpv~sR~ 126 (572)
T KOG2466|consen 52 SRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVG---YLFTAIFL--VLNSRPGSDYHISFPVLSRS 126 (572)
T ss_pred ccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHH---HHHHHHHH--HHccCCCcccccceeeeeee
Confidence 3455778888777777778888777777777777 33 54433321 11222222 22223332 477777788
Q ss_pred hcccchh---hHHHHHHHHHHHHHHHHHHHHhhhhh----hhhcC---CCCCCCCCcc-cCc-hhHHHHHHHHHHhhhhc
Q 013919 116 AFGKYGR---LLISVLLYTELYSYCVEFIILEGDNL----TSLFP---GASLDWPGFQ-LDS-THLFGILTALIVLPTIW 183 (434)
Q Consensus 116 ~~G~~~~---~~~~~~~~~~~~g~~~~y~i~~~~~~----~~~~~---~~~~~~~~~~-~~~-~~~~~~~~~~i~~pl~~ 183 (434)
.||-++. .+..+...+..+|+..= ..++.+ +..++ +.. +..+.. ... +....++.-++.+|+.+
T Consensus 127 sFGiygS~~pIi~R~vma~vwYg~~aw---iGgecV~lmL~si~~~~~hip-ntl~~~~~tt~e~i~FfIFwv~s~~~~~ 202 (572)
T KOG2466|consen 127 SFGIYGSLWPIINRVVMACVWYGVNAW---IGGECVQLMLKSIFKSFSHIP-NTLGKPGTTTYEFIGFFIFWVASLPFYW 202 (572)
T ss_pred ehhhhHhHHHHHHHHHHHHhhhhhhhh---hhhhhHHHHHHHHhhhhhcCc-cccCCCCCchHHHHHHHHHHHHhhheee
Confidence 8887653 33444444444443311 112211 22222 221 111110 111 11122233345555555
Q ss_pred cccCchhhHhhHHHHHHHHHHHHh-hhhccccccc---ccCCCCcccccc---chhhHHHHHHHhcc-CccchhhHHhhc
Q 013919 184 LRDLRVISYLSATGVVATILIVLC-VLFLGTIEGI---GFHPTGQVVKWS---GMPFAIGIYGFCYS-GHSVFPNIYQSM 255 (434)
Q Consensus 184 ~~~~~~l~~~s~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~---~~~~~~~~~~faf~-~~~~i~~i~~~m 255 (434)
. ..+.++++-....+.+....+. +++.....+. -.+......... .+..++...+=.|. ...|.|+.-+--
T Consensus 203 ~-~p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~~N~pDFsRF~ 281 (572)
T KOG2466|consen 203 F-PPYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLIVNAPDFSRFA 281 (572)
T ss_pred c-cHHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCcccccchhHHHHHHHHHHHhccchhhccCchhHhhc
Confidence 4 3444444443333332222222 2222211111 111111111111 22233333332332 566788888888
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHH----HhHHHHhhcCCchhh--hhhcC-----CCchhH--HHHHHHHHHHHHhhhhc
Q 013919 256 ADKTKFTKALITCFALCVLIYGGV----AVMGFLMFGQGTLSQ--ITLNM-----PPHAFA--SKVAVWTTVINPFTKYA 322 (434)
Q Consensus 256 ~~p~~~~~~~~~s~~~~~~~Y~~~----g~~gy~~fg~~~~~~--il~~~-----~~~~~~--~~v~~~~~~~~~~~s~p 322 (434)
|+|++....-.++..+.+.+..++ +..++..||.+--++ ++.++ ..+.+. -.+...+.+-++-....
T Consensus 282 ksp~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~l~~~y~~G~RAgvFfi~~~f~laql~~NIS 361 (572)
T KOG2466|consen 282 KSPNAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQWLDTNYSAGARAGVFFIGFGFALAQLGTNIS 361 (572)
T ss_pred CCCCccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHHhccccccccchhhhHHHHHHHHHHHhcchh
Confidence 888765555555555555555554 445677889764433 44443 333221 11111222223223333
Q ss_pred chhcchHHHHHhhcCCC
Q 013919 323 LLMNPLARSIEELLPAG 339 (434)
Q Consensus 323 l~~~~~~~~~~~~~~~~ 339 (434)
-...++-.-+..++|+-
T Consensus 362 an~vaagnDl~~L~Pky 378 (572)
T KOG2466|consen 362 ANSVAAGNDLSALLPKY 378 (572)
T ss_pred ccccccchhhHhhCcce
Confidence 44455566667777765
No 103
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=78.36 E-value=48 Score=33.58 Aligned_cols=51 Identities=14% Similarity=0.145 Sum_probs=41.4
Q ss_pred CCCHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCC
Q 013919 106 ITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGAS 156 (434)
Q Consensus 106 ~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~ 156 (434)
..-..++-++..||++.........+..+..+.+-++..+.....+-.+-.
T Consensus 324 g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~ 374 (550)
T KOG1289|consen 324 GQPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFARDGG 374 (550)
T ss_pred CChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCC
Confidence 467788889999999998888888888888888888888888777655433
No 104
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=75.30 E-value=89 Score=30.88 Aligned_cols=142 Identities=19% Similarity=0.140 Sum_probs=83.1
Q ss_pred chhhhHHH-HHHHHHHHHHHHH-HHHhHHHHhhcCCchhhhhhcCCCchhHHHHHHHHHHH--HHhhhhcchhcchHHHH
Q 013919 257 DKTKFTKA-LITCFALCVLIYG-GVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVI--NPFTKYALLMNPLARSI 332 (434)
Q Consensus 257 ~p~~~~~~-~~~s~~~~~~~Y~-~~g~~gy~~fg~~~~~~il~~~~~~~~~~~v~~~~~~~--~~~~s~pl~~~~~~~~~ 332 (434)
+-++-.+- ...+..+...... +....++..|+.--+...-.-..+.+-...+....... ....+++.+.++.+...
T Consensus 218 ~~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~ 297 (415)
T COG0814 218 YMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIA 297 (415)
T ss_pred HhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 33455553 5555555554443 45666666665322222222223232333333333322 22378888888888765
Q ss_pred HhhcCCC-------C---CC-hhH-HHHHHHHHHHHHHHHHHhhcc-cHHHHHHHHhHHHHHHHHHHhhHHHHHHHhcc
Q 013919 333 EELLPAG-------I---SN-NYW-CFILLRTALVFSSVCAAFLLP-FFSLVMALIGSLLSILVAIIMPSLCFIKILGR 398 (434)
Q Consensus 333 ~~~~~~~-------~---~~-~~~-~~~~~~~~~~~~~~~la~~~p-~~~~~~~l~G~~~~~~~~~ilP~l~~l~~~~~ 398 (434)
...+... + ++ +.. .|..........+.+.+...| .+....+.+|++..+..+-++|.+++.+-++.
T Consensus 298 tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~ 376 (415)
T COG0814 298 TSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKL 376 (415)
T ss_pred HHHhCchhhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5433211 1 11 111 145556666677888888888 78889999999999999999999999998543
No 105
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=74.60 E-value=1.1e+02 Score=31.51 Aligned_cols=72 Identities=19% Similarity=0.248 Sum_probs=45.1
Q ss_pred CchHHHHHHHHHhhhccc-cchhHHHH-HhhcH---H-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhcc
Q 013919 46 CSFTQTIFNGINVMAGVG-LLSTPYTV-KEAGW---A-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG 118 (434)
Q Consensus 46 ~s~~~~~~~l~~~~iG~G-il~lP~a~-~~~G~---~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G 118 (434)
.+-++.....++-.++.| +--.||-. .+.|+ + =.+++++.|+=..|-=..+.+-++ .+...-+..++=..-|
T Consensus 82 ~~K~eflLa~vgfaV~lgnvWrFpYlC~~nGGgaFlvpY~imli~~GvPLfymELaLGQ~~r-~g~~gvw~ri~P~l~G 159 (629)
T KOG3659|consen 82 GSKTEFLLAVVGFAVDLGNVWRFPYLCYKNGGGAFLVPYTIMLIVGGVPLFYMELALGQYHR-QGCIGVWRRIAPALKG 159 (629)
T ss_pred hhHHHHHHHHHHHhhcccccceeeheeeeCCCEeEhHHHHHHHHHhccHHHHHHHHHHHHhc-ccchhHHHHhCHHhcC
Confidence 455778888888888888 56689765 45554 2 445666667776776666666644 4444444444444444
No 106
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=70.17 E-value=1.3e+02 Score=30.47 Aligned_cols=21 Identities=14% Similarity=-0.062 Sum_probs=17.2
Q ss_pred CchHHHHHHHHHhhhccccch
Q 013919 46 CSFTQTIFNGINVMAGVGLLS 66 (434)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~ 66 (434)
-|.++-...+..+-+|+|++.
T Consensus 75 fS~~sW~aMlf~aGig~Givf 95 (485)
T PF02028_consen 75 FSTFSWFAMLFCAGIGAGIVF 95 (485)
T ss_dssp S-HHHHHHHHHHHCSSHHHHH
T ss_pred CCchHHHHHHHHHHhcchhhc
Confidence 567888889999999999874
No 107
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=66.22 E-value=1.4e+02 Score=29.31 Aligned_cols=93 Identities=17% Similarity=0.074 Sum_probs=46.7
Q ss_pred HHHhhhccccchhHHHHHhhcHH---HHHHHHHHHHHHHHHHH-HHHHhhhhCCCCCCHHHHHHHhcccchhhHHHHHHH
Q 013919 55 GINVMAGVGLLSTPYTVKEAGWA---SLVVLLLFAVVCCYTAS-LMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLY 130 (434)
Q Consensus 55 l~~~~iG~Gil~lP~a~~~~G~~---g~~~l~~~~~~~~~~~~-~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~ 130 (434)
...+-+|.|=+. +..++|-- ..+..++.+.+..+... +-.|. ...+ .++..|.+++.++|+.++...+...
T Consensus 13 va~a~idPG~i~---t~~~aGa~fGy~LLW~llls~~~~~~~Q~~aaRl-g~vT-g~~l~~~~r~~~~~~~~~~~~~~~~ 87 (390)
T TIGR01197 13 MSIAYIDPGNYS---TDLQAGAAAGYKLLWVLLLSNIMALLLQRLCARL-GVVT-GLDLAEVCREHYPKVPRITLWILAE 87 (390)
T ss_pred HHHHhcCchHHH---HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHh-eeec-CCCHHHHHHHHCCCchHHHHHHHHH
Confidence 334446666444 22444432 33333333333333333 33333 2233 3789999999999877665554444
Q ss_pred HHHHHHHHHHHHHhhhhhhhhc
Q 013919 131 TELYSYCVEFIILEGDNLTSLF 152 (434)
Q Consensus 131 ~~~~g~~~~y~i~~~~~~~~~~ 152 (434)
+...+.........+--++-++
T Consensus 88 l~ii~~~~~e~~G~a~al~ll~ 109 (390)
T TIGR01197 88 LAIIATDMAEVIGTAIALNLLS 109 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4444445555444444444443
No 108
>PLN02680 carbon-monoxide oxygenase
Probab=66.03 E-value=1e+02 Score=27.68 Aligned_cols=116 Identities=10% Similarity=0.181 Sum_probs=66.0
Q ss_pred hhhhcc-cccccccCCC--CccccccchhhHHHHHHHhccCccchhhHHhhccchhhhHHHHHHHHHHHHHHHHHHHhHH
Q 013919 207 CVLFLG-TIEGIGFHPT--GQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMG 283 (434)
Q Consensus 207 ~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~s~~~~~~~Y~~~g~~g 283 (434)
+.+|.. ..++..++.+ ...+++-.+....|.+.. .++..+. ++..+.+|+.+|.+....-....+..++|+..
T Consensus 25 v~~W~~~~rgG~aw~~~~~~~~Fn~HPlLM~~Gfi~l--~geAIL~--yr~~~~~k~~~K~iH~~L~~lA~~l~vvGl~a 100 (232)
T PLN02680 25 VLTWTVHYRGGLALSSDNKDLIFNVHPVLMVIGLVLL--NGEAMLA--YKTVPGTKNLKKLVHLTLQFLAFCLSLIGVWA 100 (232)
T ss_pred HHHHHHHhCccccccCCCCcceEechHHHHHHHHHHH--HHHHHhc--cccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344433 2345555432 235677777766666552 2222222 34455667788889998888888888888866
Q ss_pred HHhhcCCchhhhhhcCCCchhHHHHHHHHHHHHHhhhhcchhcch
Q 013919 284 FLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPL 328 (434)
Q Consensus 284 y~~fg~~~~~~il~~~~~~~~~~~v~~~~~~~~~~~s~pl~~~~~ 328 (434)
...+.++ .++.+-++-..|.-....+++.++.+..+....+|-
T Consensus 101 vfk~hn~--~~~~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~ 143 (232)
T PLN02680 101 ALKFHNE--KGIDNFYSLHSWLGLACLFLFSLQWAAGFVTFWYPG 143 (232)
T ss_pred HHHhccc--cCccccccHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 5555443 233322333345555555666666666665555563
No 109
>PRK09928 choline transport protein BetT; Provisional
Probab=61.66 E-value=2.2e+02 Score=30.10 Aligned_cols=21 Identities=14% Similarity=-0.007 Sum_probs=16.5
Q ss_pred CchHHHHHHHHHhhhccccch
Q 013919 46 CSFTQTIFNGINVMAGVGLLS 66 (434)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~ 66 (434)
-|.++-+..+.++-+|+|++.
T Consensus 93 fS~~sW~aMLFaAGmGigLmf 113 (679)
T PRK09928 93 FSLLSWAAMLFAAGIGIDLMF 113 (679)
T ss_pred CCcchHHHHHHHHhhhhhhee
Confidence 455677788889999999874
No 110
>CHL00182 tatC Sec-independent translocase component C; Provisional
Probab=51.98 E-value=1.9e+02 Score=26.35 Aligned_cols=38 Identities=5% Similarity=-0.080 Sum_probs=25.0
Q ss_pred chhHHHHHHHHHHHHHhhhhcchhcchHHHHHhhcCCC
Q 013919 302 HAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAG 339 (434)
Q Consensus 302 ~~~~~~v~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~ 339 (434)
.+....-.+....+....+.|...+-....+..-+.++
T Consensus 75 ~E~f~~~ikls~~~g~~~a~P~i~yqiw~Fi~PgLy~~ 112 (249)
T CHL00182 75 GEYFFSSIKISFYTGLLISSPFIIYQIILFILPGLTKK 112 (249)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHH
Confidence 34555555777778888999998776666555444333
No 111
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=50.41 E-value=1.5e+02 Score=24.74 Aligned_cols=106 Identities=13% Similarity=0.193 Sum_probs=58.4
Q ss_pred ccCCCCccccccchhhHHHHHHHhccCccchhhHH--hhccchhhhHHHHHHHHHHHHHHHHHHHhHHHHhhcCCchhhh
Q 013919 218 GFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIY--QSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQI 295 (434)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~--~~m~~p~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fg~~~~~~i 295 (434)
.|+.+...+++-.+....|.+. ..+.. +.... ...+.+|+.+|.+....-....+-.++|+.....+.++. +.
T Consensus 4 ~w~~~~~~Fn~HPlLm~~Gfi~--l~geA-iL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~--~~ 78 (153)
T cd08765 4 GWDGGAAEFNWHPVLMVIGFIF--IQGIA-IIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFVFHNAK--NI 78 (153)
T ss_pred CCCCCCCeeechHHHHHHHHHH--HHHHH-HHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CC
Confidence 3443344556666665555433 11221 11111 111233567788888888888888888886666665442 22
Q ss_pred hhcCCCchhHHHHHHHHHHHHHhhhhcchhcch
Q 013919 296 TLNMPPHAFASKVAVWTTVINPFTKYALLMNPL 328 (434)
Q Consensus 296 l~~~~~~~~~~~v~~~~~~~~~~~s~pl~~~~~ 328 (434)
..-++-..|.-.+..+++.++.+..+....+|.
T Consensus 79 ~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~ 111 (153)
T cd08765 79 PNMYSLHSWVGLAAVILYPLQLVLGISVYLLPV 111 (153)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 222232345555566666777777777776775
No 112
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=49.32 E-value=1.3e+02 Score=23.59 Aligned_cols=71 Identities=15% Similarity=0.006 Sum_probs=45.2
Q ss_pred cCCccCCCCCchHHHHHHHHHhhhccccchhHHHHHhhcHH-HHH-HHHHHHHHHHHHHHHHHHhhhhCCCCC
Q 013919 37 TGELPIAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLV-VLLLFAVVCCYTASLMRYCFESKEGIT 107 (434)
Q Consensus 37 ~~~~~~~~~~s~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~-g~~-~l~~~~~~~~~~~~~l~~~~~~~~~~~ 107 (434)
+.|...-++.|.-+......-+....-++++|.+....+|. ... +++...+...++...+.+..+..|+..
T Consensus 9 N~ePvV~rGlT~~El~~~~~~~~~~gl~~g~~l~~~~~~w~~~p~~~lig~~l~v~~gg~~l~rlKRGrPe~y 81 (111)
T TIGR03750 9 NREPVVFRGLTADELGVAAGVGLAAGLVLGLLLALLAGPWALIPTGALLGPILVVLIGGKLLARLKRGKPEGY 81 (111)
T ss_pred cCCCceecccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCchH
Confidence 34455566777666666655555555678899777666787 544 444455566677778888876666533
No 113
>TIGR00909 2A0306 amino acid transporter.
Probab=48.18 E-value=2.8e+02 Score=27.25 Aligned_cols=48 Identities=13% Similarity=-0.005 Sum_probs=38.6
Q ss_pred CCHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCC
Q 013919 107 TTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPG 154 (434)
Q Consensus 107 ~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~ 154 (434)
....+..++..|+++..+..+...+..++...+.+...+..+...-++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~d 311 (429)
T TIGR00909 264 APLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRD 311 (429)
T ss_pred cHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345677788888888888889888988899988888888888766544
No 114
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=44.90 E-value=3.3e+02 Score=27.20 Aligned_cols=30 Identities=20% Similarity=0.199 Sum_probs=22.1
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 013919 256 ADKTKFTKALITCFALCVLIYGGVAVMGFL 285 (434)
Q Consensus 256 ~~p~~~~~~~~~s~~~~~~~Y~~~g~~gy~ 285 (434)
||++|.++....+...+..+-..++..-+.
T Consensus 311 ~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~ 340 (455)
T COG0534 311 GNYKRARRAARLALKLSLLIALLIALLLLL 340 (455)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477788888888888888877666665443
No 115
>PLN02810 carbon-monoxide oxygenase
Probab=44.00 E-value=2.4e+02 Score=25.26 Aligned_cols=109 Identities=15% Similarity=0.162 Sum_probs=59.5
Q ss_pred ccccccCCC--CccccccchhhHHHHHHHhccCccchhhHHhhccchhhhHHHHHHHHHHHHHHHHHHHhHHHHhhcCCc
Q 013919 214 IEGIGFHPT--GQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGT 291 (434)
Q Consensus 214 ~~~~~~~~~--~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fg~~~ 291 (434)
.++..++.+ ...+||-.+....|. .|..-+.+.. ++..+.+++.+|.+....=...++..++|+.....+.++.
T Consensus 33 rgG~aw~~~~~~~~FN~HPvlMv~Gf---i~l~geAIL~-Yr~~~~~k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~ 108 (231)
T PLN02810 33 RGGLAWEATNKNLIFNLHPVLMLIGL---IIIGGEAIMS-YKSLPLKKEVKKLIHLVLHAIALILGIFGICAAFKNHNES 108 (231)
T ss_pred CCcccccCCCCCceeeehHHHHHHHH---HHHhhHHHHH-hhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 455566533 235666665555443 3333233222 2444555677899999988888888888887666665443
Q ss_pred hhhhhhcCCCchhHHHHHHHHHHHHHhhhhcchhcch
Q 013919 292 LSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPL 328 (434)
Q Consensus 292 ~~~il~~~~~~~~~~~v~~~~~~~~~~~s~pl~~~~~ 328 (434)
.+.+-++-..|.-.....++.++-+..+-...+|.
T Consensus 109 --~i~nlySLHSWlGl~tv~Lf~lQw~~Gf~~Fl~P~ 143 (231)
T PLN02810 109 --GIANLYSLHSWLGIGIISLYGIQWIYGFIVFFFPG 143 (231)
T ss_pred --CCCceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 22222222234444444555556555554444453
No 116
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=42.57 E-value=26 Score=22.33 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhcCCc
Q 013919 263 KALITCFALCVLIYGGVAVMGFLMFGQGT 291 (434)
Q Consensus 263 ~~~~~s~~~~~~~Y~~~g~~gy~~fg~~~ 291 (434)
.+...++.+..++.-+.|..-|.+||...
T Consensus 6 ~A~~~~i~i~~lL~~~TgyaiYtaFGppS 34 (46)
T PRK13183 6 PALSLAITILAILLALTGFGIYTAFGPPS 34 (46)
T ss_pred hhHHHHHHHHHHHHHHhhheeeeccCCcc
Confidence 45566677777777778888888998643
No 117
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=39.79 E-value=28 Score=21.90 Aligned_cols=27 Identities=11% Similarity=0.185 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhcCCc
Q 013919 265 LITCFALCVLIYGGVAVMGFLMFGQGT 291 (434)
Q Consensus 265 ~~~s~~~~~~~Y~~~g~~gy~~fg~~~ 291 (434)
...++.+..++-.+.|...|.+||...
T Consensus 5 ~~~~i~i~~~lv~~Tgy~iYtaFGppS 31 (43)
T PF02468_consen 5 TVLAIFISCLLVSITGYAIYTAFGPPS 31 (43)
T ss_pred eeHHHHHHHHHHHHHhhhhhheeCCCc
Confidence 445666777777778888888998543
No 118
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=39.69 E-value=98 Score=22.57 Aligned_cols=17 Identities=41% Similarity=0.532 Sum_probs=11.0
Q ss_pred CchhhhHHHhhhccccc
Q 013919 8 LSEYEKEELDRISRTRS 24 (434)
Q Consensus 8 ~~~~~~~~~~~~~~~~~ 24 (434)
+||+|++..+.+.+...
T Consensus 3 LSe~E~r~L~eiEr~L~ 19 (82)
T PF11239_consen 3 LSEHEQRRLEEIERQLR 19 (82)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 57777776666665443
No 119
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=38.85 E-value=57 Score=29.09 Aligned_cols=73 Identities=16% Similarity=0.265 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHH---------hHHHHHHHHHHhhHHHHHHHhcccc-----chhhHhhhHHHHHHHH
Q 013919 351 RTALVFSSVCAAFLLPFFSLVMALI---------GSLLSILVAIIMPSLCFIKILGRKA-----TRTQIVSSTAIAVLGV 416 (434)
Q Consensus 351 ~~~~~~~~~~la~~~p~~~~~~~l~---------G~~~~~~~~~ilP~l~~l~~~~~~~-----~~~~~~~~~~~~~~g~ 416 (434)
+-..+..++++|.+++.++-++.++ ||.++.-+.++= |..+-+... .-..+|+.|+++++|+
T Consensus 159 nd~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ 234 (262)
T KOG4812|consen 159 NDGIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGL 234 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHH
Confidence 3344556677777777777666654 666665555543 333322111 1124788999999999
Q ss_pred HHHHHHHHHHH
Q 013919 417 ICAILGTFSSV 427 (434)
Q Consensus 417 ~~~v~g~~~si 427 (434)
++..-|++.=+
T Consensus 235 ll~lr~~i~Yi 245 (262)
T KOG4812|consen 235 LLFLRGFINYI 245 (262)
T ss_pred HHHHHHHHhHH
Confidence 99998887543
No 120
>CHL00020 psbN photosystem II protein N
Probab=38.51 E-value=25 Score=22.02 Aligned_cols=28 Identities=18% Similarity=0.206 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhcCCc
Q 013919 264 ALITCFALCVLIYGGVAVMGFLMFGQGT 291 (434)
Q Consensus 264 ~~~~s~~~~~~~Y~~~g~~gy~~fg~~~ 291 (434)
+...++.+..++.-+.|..-|.+||...
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGppS 31 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQPS 31 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCch
Confidence 4556677777777777888888898643
No 121
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=38.23 E-value=1.8e+02 Score=30.58 Aligned_cols=68 Identities=9% Similarity=0.035 Sum_probs=41.9
Q ss_pred hHHHHHHHHHhhhccccchhHHHH--HhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhccc
Q 013919 48 FTQTIFNGINVMAGVGLLSTPYTV--KEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK 119 (434)
Q Consensus 48 ~~~~~~~l~~~~iG~Gil~lP~a~--~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~ 119 (434)
++-....++. ...++......+ .+..+. .++.+++..+++..+.+...+... +....+..+.+..+|-
T Consensus 357 ww~~~~~~~~--~v~~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~~--~P~~~~~~~sqli~g~ 427 (624)
T PF03169_consen 357 WWYLAGLVVS--FVLAIIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGETGI--NPVSGLNILSQLIFGL 427 (624)
T ss_pred HHHHHHHHHH--HHHHHHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcCC--CcchhhhHHHHHHHHH
Confidence 3444444433 333455666677 345555 666777777888888888777733 4456677777777764
No 122
>COG4709 Predicted membrane protein [Function unknown]
Probab=35.53 E-value=2.9e+02 Score=23.82 Aligned_cols=52 Identities=15% Similarity=0.146 Sum_probs=28.4
Q ss_pred CchHHHHHHHHHhhhccccchhHHHH-HhhcHH-HHHHHHHHHHHHHHHHHHHHHhhh
Q 013919 46 CSFTQTIFNGINVMAGVGLLSTPYTV-KEAGWA-SLVVLLLFAVVCCYTASLMRYCFE 101 (434)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~lP~a~-~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~ 101 (434)
-+..+++.++ +|.|.++.|... --.|.+ .++.+++.++...++.+.+.-..-
T Consensus 76 ~n~~~aii~~----~~L~~~~v~i~Lpl~~~vi~~viailv~~lt~if~~~a~~~agi 129 (195)
T COG4709 76 KNVRRAIIAL----IGLGLLAVIIGLPLLIGVILFVIAILVAALTLIFSGWALVAAGI 129 (195)
T ss_pred cchHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455655554 455566666554 233444 445555556666666666655543
No 123
>TIGR01912 TatC-Arch Twin arginine targeting (Tat) protein translocase TatC, Archaeal clade. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR00945) represents the bacterial clade of this family. TatC is often found (in bacteria) in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=33.45 E-value=3.6e+02 Score=24.28 Aligned_cols=38 Identities=16% Similarity=-0.033 Sum_probs=25.6
Q ss_pred chhHHHHHHHHHHHHHhhhhcchhcchHHHHHhhcCCC
Q 013919 302 HAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAG 339 (434)
Q Consensus 302 ~~~~~~v~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~ 339 (434)
.+....-.++........+.|...+-....+..-+.++
T Consensus 62 ~e~f~~~lk~s~~~g~~~~~P~i~yqiw~Fi~PgLy~~ 99 (237)
T TIGR01912 62 FAALELRIKSAFFIGLLLASPVLAYEAYRFIKPALKPH 99 (237)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 34555556677778888999998876666665444433
No 124
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=31.89 E-value=4.6e+02 Score=26.46 Aligned_cols=45 Identities=9% Similarity=0.015 Sum_probs=33.6
Q ss_pred HHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCC
Q 013919 109 YPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPG 154 (434)
Q Consensus 109 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~ 154 (434)
-.+.+++.+|++. +.+-+...+..+|..-+.+...+..+.....+
T Consensus 275 av~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~are 319 (479)
T KOG1287|consen 275 AVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGARE 319 (479)
T ss_pred HHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHc
Confidence 3467889999888 88888888888888877776666666555443
No 125
>PLN02351 cytochromes b561 family protein
Probab=30.98 E-value=4e+02 Score=24.07 Aligned_cols=73 Identities=14% Similarity=0.069 Sum_probs=41.4
Q ss_pred HhhccchhhhHHHHHHHHHHHHHHHHHHHhHHHHhhcCCchhhhhhcC-CCchhHHHHHHHHHHHHHhhhhcchhcch
Q 013919 252 YQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNM-PPHAFASKVAVWTTVINPFTKYALLMNPL 328 (434)
Q Consensus 252 ~~~m~~p~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~-~~~~~~~~v~~~~~~~~~~~s~pl~~~~~ 328 (434)
++-++.++|.+|.+....-...++..++|+.. .|-++ ++...|+ .-..|.-.....++.++-+..+....+|.
T Consensus 73 YR~~~~~~k~~K~lH~~Lh~~Ali~~vvGl~a--~fh~~--~~~i~nlySLHSWlGl~tv~Lf~lQwv~Gf~~F~~P~ 146 (242)
T PLN02351 73 HRWLPGSRKTKKSVHLWLQGLALASGVFGIWT--KFHGQ--DGIVANFYSLHSWMGLICVSLFGAQWLTGFMSFWHRG 146 (242)
T ss_pred hhcccccchHHHHHHHHHHHHHHHHHHHHHHH--HHhcc--cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44566667678888888888777777777766 44322 1222222 22234444444555556555555555554
No 126
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=30.95 E-value=4.2e+02 Score=24.24 Aligned_cols=37 Identities=8% Similarity=-0.080 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHHHhhhhcchhcchHHHHHhhcCCC
Q 013919 303 AFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAG 339 (434)
Q Consensus 303 ~~~~~v~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~ 339 (434)
+....-.++...+.+..+.|...+=....+..-+.++
T Consensus 66 e~f~~~lk~sl~~g~~la~P~ilyqiw~Fi~PgLy~~ 102 (258)
T PRK10921 66 SPFFTPIKLTFMVSLILSAPVILYQVWAFIAPALYKH 102 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 4444455677778888999998876666555444433
No 127
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=30.66 E-value=6.2e+02 Score=26.13 Aligned_cols=45 Identities=7% Similarity=-0.069 Sum_probs=25.0
Q ss_pred CHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 013919 108 TYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLF 152 (434)
Q Consensus 108 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~~~~~~ 152 (434)
.+.+..+...+++++.++.+......++...+.+...+..+..+-
T Consensus 300 p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~ama 344 (557)
T TIGR00906 300 PFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMA 344 (557)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443345556666665555565666666666666655543
No 128
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=29.67 E-value=3.2e+02 Score=23.22 Aligned_cols=46 Identities=17% Similarity=0.344 Sum_probs=31.2
Q ss_pred hhhccccchhHHHHH--hhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhC
Q 013919 58 VMAGVGLLSTPYTVK--EAGWA-SLVVLLLFAVVCCYTASLMRYCFESK 103 (434)
Q Consensus 58 ~~iG~Gil~lP~a~~--~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~ 103 (434)
+-+|.+++..|++.. +-++. -.+.++..++++..++.++..+.++.
T Consensus 47 T~v~P~~ll~Pf~~g~wk~t~~G~~igi~~~gv~Si~aAllY~~~l~k~ 95 (173)
T PF11085_consen 47 TEVGPNFLLEPFALGDWKNTWLGNLIGIVFIGVFSIVAALLYYALLKKF 95 (173)
T ss_pred cccccChhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 458999999998873 44555 44556667777777777766665433
No 129
>PRK09950 putative transporter; Provisional
Probab=29.56 E-value=6.2e+02 Score=25.81 Aligned_cols=22 Identities=23% Similarity=0.016 Sum_probs=17.5
Q ss_pred CCchHHHHHHHHHhhhccccch
Q 013919 45 GCSFTQTIFNGINVMAGVGLLS 66 (434)
Q Consensus 45 ~~s~~~~~~~l~~~~iG~Gil~ 66 (434)
+=|.++-...+.++-+|+|++.
T Consensus 83 efS~~sW~aMlf~aG~G~gllf 104 (506)
T PRK09950 83 EYSTLSWLFMFICAGLGSSTLY 104 (506)
T ss_pred CccchhHHHHHHHHhhhhHHHH
Confidence 3566777888899999999874
No 130
>PF00902 TatC: Sec-independent protein translocase protein (TatC); InterPro: IPR002033 Proteins encoded by the mttABC operon (formerly yigTUW), mediate a novel Sec-independent membrane targeting and translocation system in Escherichia coli that interacts with cofactor-containing redox proteins having a S/TRRXFLK "twin arginine" leader motif. This family contains the E. coli mttB gene (TATC) []. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N and C termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N terminus and the first cytoplasmic loop region of the E. coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon [, ].
Probab=29.48 E-value=3.9e+02 Score=23.48 Aligned_cols=95 Identities=15% Similarity=0.136 Sum_probs=50.1
Q ss_pred chhHHHHHHHHHHHHHhhhhcchhcchHHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHHHhh--cc-------------
Q 013919 302 HAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAFL--LP------------- 366 (434)
Q Consensus 302 ~~~~~~v~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~--~p------------- 366 (434)
.+....-.++...++...+.|...+-....+..-+.+++++.-.................+.. .|
T Consensus 58 ~e~f~~~lk~s~~~~~~~~~P~~~yq~w~Fi~PgL~~~Er~~~~~~~~~~~~lf~~g~~f~y~~ilP~~~~fl~~f~~~~ 137 (215)
T PF00902_consen 58 TEAFFTYLKLSFFLGLIISLPYILYQIWAFIAPGLYKHERRFFKKFVLISFILFLLGVAFAYFVILPLILKFLLSFSPTS 137 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 345555566777788889999988777666665544443222122222233232222223322 23
Q ss_pred ------cHHHHHHHHh-HHHHHHHHHHhhHHHHHHHh
Q 013919 367 ------FFSLVMALIG-SLLSILVAIIMPSLCFIKIL 396 (434)
Q Consensus 367 ------~~~~~~~l~G-~~~~~~~~~ilP~l~~l~~~ 396 (434)
++++.++++- -....-+.|-+|.++....+
T Consensus 138 ~~~~~~~i~~y~~f~~~~~~~~gl~FqlPli~~~L~~ 174 (215)
T PF00902_consen 138 GIQPEPSISSYLNFVIQFLLIFGLIFQLPLIMFFLVR 174 (215)
T ss_pred chhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333333332 23344556778999888775
No 131
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=29.32 E-value=1.5e+02 Score=21.81 Aligned_cols=58 Identities=14% Similarity=0.069 Sum_probs=33.2
Q ss_pred HHHHHHHhccCccchhhHHhhccchh-hhHHHHHHHHHHHHHHHHHHHhHHHHhhcCCchh
Q 013919 234 AIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFALCVLIYGGVAVMGFLMFGQGTLS 293 (434)
Q Consensus 234 ~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~s~~~~~~~Y~~~g~~gy~~fg~~~~~ 293 (434)
..|+...+-.|.....+..+.-.+|. +..|++.+.- ++.-+-++.|++.|..|| ...+
T Consensus 16 i~GIiLL~~ACIFAfidFSK~~s~~~~~~wRalSii~-FIlG~vl~lGilifs~y~-~C~~ 74 (91)
T PHA02680 16 ICGVLLLTAACVFAFVDFSKNTSNVTDYVWRALSVTC-FIVGAVLLLGLFVFSMYR-KCSG 74 (91)
T ss_pred HHHHHHHHHHHHHhhhhhhccCCCCcchhHHHHHHHH-HHHHHHHHHHHHHHHHhc-ccCC
Confidence 44555555556666666666665665 3444444432 233334667888898888 4433
No 132
>PF10716 NdhL: NADH dehydrogenase transmembrane subunit; InterPro: IPR019654 NAD(P)H-quinone oxidoreductase subunit L (NdhL) is a component of the NDH-1L complex that is one of the proton-pumping NADH:ubiquinone oxidoreductases that catalyse the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. NDH-1L is essential for photoheterotrophic cell growth. NdhL appears to contain two transmembrane helices and it is necessary for the functioning of though not the correct assembly of the NDH-1 complex in Synechocystis 6803. The conservation between cyanobacteria and green plants suggests that chloroplast NDH-1 complexes contain related subunits []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=29.15 E-value=2.3e+02 Score=20.62 Aligned_cols=47 Identities=11% Similarity=0.077 Sum_probs=28.1
Q ss_pred cHHHHHHHHhHHHHHHHHHHhhHHHHHHHh--ccccchhhHhhhHHHHHH
Q 013919 367 FFSLVMALIGSLLSILVAIIMPSLCFIKIL--GRKATRTQIVSSTAIAVL 414 (434)
Q Consensus 367 ~~~~~~~l~G~~~~~~~~~ilP~l~~l~~~--~~~~~~~~~~~~~~~~~~ 414 (434)
+...+...-+++++. -..++|.+.|..++ +...+++|+...+.++.+
T Consensus 13 ~~l~vl~~y~~l~~~-YLlVvP~~l~~wm~~RWy~~~~~Er~~~y~lvF~ 61 (81)
T PF10716_consen 13 DTLLVLLAYAALAGL-YLLVVPLILYFWMNKRWYVMSSFERLFMYFLVFL 61 (81)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555566443 45667888777664 445667777765554443
No 133
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=28.98 E-value=1.9e+02 Score=22.82 Aligned_cols=25 Identities=8% Similarity=0.107 Sum_probs=14.0
Q ss_pred chHHHHHHHHHhhhccccchhHHHH
Q 013919 47 SFTQTIFNGINVMAGVGLLSTPYTV 71 (434)
Q Consensus 47 s~~~~~~~l~~~~iG~Gil~lP~a~ 71 (434)
+|...+..+.=..+|+..+.+...+
T Consensus 40 pwK~I~la~~Lli~G~~li~~g~l~ 64 (115)
T PF05915_consen 40 PWKSIALAVFLLIFGTVLIIIGLLL 64 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555556666666555443
No 134
>KOG2174 consensus Leptin receptor gene-related protein [Signal transduction mechanisms]
Probab=26.98 E-value=1.8e+02 Score=23.20 Aligned_cols=52 Identities=13% Similarity=0.089 Sum_probs=31.8
Q ss_pred hHHHHHHHHHhhhccccchhHHHHHhhcHH--HHHHHHHHH-HHHHHHHHHHHHh
Q 013919 48 FTQTIFNGINVMAGVGLLSTPYTVKEAGWA--SLVVLLLFA-VVCCYTASLMRYC 99 (434)
Q Consensus 48 ~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~--g~~~l~~~~-~~~~~~~~~l~~~ 99 (434)
.+.-......+.+=.|-+++|..++++|.+ |...+...+ .+.+.+......+
T Consensus 65 ~~idlA~FlTg~~vvs~falPiVl~ha~lI~~gAc~l~~tg~~iIF~~ii~~f~~ 119 (131)
T KOG2174|consen 65 ACIDLAKFLTGAIVVSAFALPIVLAHAGLIGWGACALVLTGNSIIFLVIILFFLI 119 (131)
T ss_pred HHHHHHHHHhcchhhhhhhhHHHHHHhhHhhhhhhhhhhcCCchhHHHHHHHHHH
Confidence 344455555555556668999999999988 444555555 3444444444444
No 135
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=26.75 E-value=4.8e+02 Score=23.54 Aligned_cols=110 Identities=12% Similarity=0.102 Sum_probs=63.3
Q ss_pred cccccccCCCC-ccccccchhhHHHHHHHhccCccchhhHHhhcc-chhhhHHHHHHHHHHHHHHHHHHHhHHHHhhcCC
Q 013919 213 TIEGIGFHPTG-QVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMA-DKTKFTKALITCFALCVLIYGGVAVMGFLMFGQG 290 (434)
Q Consensus 213 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~-~p~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fg~~ 290 (434)
..++..|+.++ ..+|+-.+...+|.+ |..-+ ..-+++-.+ ..|+.+|.+....=.+.+.-.++|+.....+-+.
T Consensus 41 yr~Glaw~~~~~~~fnlHP~lMviGfI---~l~Ge-AiL~YR~~r~~~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~ 116 (245)
T KOG1619|consen 41 YRGGLAWSSSPNKEFNLHPVLMVIGFI---YLQGE-AILIYRVFRYTSKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNL 116 (245)
T ss_pred cCCccCCCCCcchhcCcchHHHHHHHH---Hhccc-eeeeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34556676555 345555555544443 33333 333444434 4568999999999888888888888887777655
Q ss_pred chhhhhhcCCCchhHHHHHHHHHHHHHhhhhcchhcch
Q 013919 291 TLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPL 328 (434)
Q Consensus 291 ~~~~il~~~~~~~~~~~v~~~~~~~~~~~s~pl~~~~~ 328 (434)
.. +.+-++-..|.-....+++..+-...+--..+|.
T Consensus 117 ~~--i~NfySLHSWlGl~~v~ly~~Q~v~GF~tfl~pg 152 (245)
T KOG1619|consen 117 VG--IANFYSLHSWLGLCVVILYSLQWVFGFFTFLFPG 152 (245)
T ss_pred cC--ccceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44 1111222234444445555566555555544443
No 136
>PRK01766 multidrug efflux protein; Reviewed
Probab=26.46 E-value=6.4e+02 Score=24.91 Aligned_cols=28 Identities=7% Similarity=-0.145 Sum_probs=16.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhHH
Q 013919 256 ADKTKFTKALITCFALCVLIYGGVAVMG 283 (434)
Q Consensus 256 ~~p~~~~~~~~~s~~~~~~~Y~~~g~~g 283 (434)
+|+++.++....+..+.+.+....+...
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (456)
T PRK01766 309 GRTLDARQYAYIGLAVGLGMALLTAIFL 336 (456)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777766666655544433
No 137
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=26.42 E-value=1.8e+02 Score=19.30 Aligned_cols=34 Identities=9% Similarity=0.071 Sum_probs=22.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHhhcCCch
Q 013919 258 KTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTL 292 (434)
Q Consensus 258 p~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fg~~~~ 292 (434)
|+.+..+ .+=.+++.++|++.|+.-+..+.++..
T Consensus 19 ~NsF~fV-iik~vismimylilGi~L~yis~~~~~ 52 (54)
T PF04835_consen 19 PNSFWFV-IIKSVISMIMYLILGIALIYISSNDDK 52 (54)
T ss_pred CchHHHH-HHHHHHHHHHHHHHHHHHhhhccCccc
Confidence 4444433 444567889999999987777765544
No 138
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=25.63 E-value=1.9e+02 Score=21.41 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=23.3
Q ss_pred CccCCCCCchHHHHHHHHHhhhccccchhHHH
Q 013919 39 ELPIAHGCSFTQTIFNGINVMAGVGLLSTPYT 70 (434)
Q Consensus 39 ~~~~~~~~s~~~~~~~l~~~~iG~Gil~lP~a 70 (434)
|.+.-.+.|+.|.........+|.|+..+-+.
T Consensus 10 e~ki~~GlT~RQl~~l~~~~~~~~~~~~~~~~ 41 (93)
T PF12666_consen 10 EEKIFFGLTLRQLICLAIGALVGVGVYLLLWF 41 (93)
T ss_pred cchhccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444557999999999999998886554433
No 139
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.95 E-value=7.1e+02 Score=24.94 Aligned_cols=11 Identities=18% Similarity=0.184 Sum_probs=8.4
Q ss_pred HHHHhhhcccc
Q 013919 54 NGINVMAGVGL 64 (434)
Q Consensus 54 ~l~~~~iG~Gi 64 (434)
.+.++.+|+|.
T Consensus 293 ~Lfsa~lGsG~ 303 (593)
T KOG1277|consen 293 LLFSAVLGSGA 303 (593)
T ss_pred HHHHHHhcccc
Confidence 56778889884
No 140
>PHA03048 IMV membrane protein; Provisional
Probab=23.38 E-value=2.6e+02 Score=20.78 Aligned_cols=61 Identities=15% Similarity=0.093 Sum_probs=36.9
Q ss_pred hhHHHHHHHhccCccchhhHHhhccchhhhHHHHHHHHHHHHHHHHHHHhHHHHhhcCCchhh
Q 013919 232 PFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQ 294 (434)
Q Consensus 232 ~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fg~~~~~~ 294 (434)
....|++..+-.|.....+..+. |++....|++.+... +.-+-+++|++-|..+|....++
T Consensus 14 vli~GIiLL~~aCIfAfidfsK~-k~~~~~wRalsii~F-Ilgivl~lG~~ifsmy~r~C~~~ 74 (93)
T PHA03048 14 ALIGGIILLAASCIFAFVDFSKN-KATVTVWRALSGIAF-VLGIVMTIGMLIYSMWGRYCTPS 74 (93)
T ss_pred HHHHHHHHHHHHHHHhhhhhhcC-CCcchhHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCC
Confidence 34556666666666666677776 444444455544322 23344678888899998666554
No 141
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=23.26 E-value=4.9e+02 Score=22.46 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=23.4
Q ss_pred HHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCC
Q 013919 71 VKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKE 104 (434)
Q Consensus 71 ~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~ 104 (434)
|+.-..+ |++.+++.+...-++++++.+...++.
T Consensus 118 f~~nA~~~GlItlll~a~vgGfamy~my~y~yr~~ 152 (226)
T COG4858 118 FQKNAQVYGLITLLLTAVVGGFAMYIMYYYAYRMR 152 (226)
T ss_pred HhcCCcchhHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4444566 888888888888888777766654443
No 142
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=23.18 E-value=1.7e+02 Score=25.42 Aligned_cols=62 Identities=18% Similarity=0.277 Sum_probs=40.5
Q ss_pred HHHHHhHHHHHHHHHHhhHHHHHHHhccc----------cchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 013919 371 VMALIGSLLSILVAIIMPSLCFIKILGRK----------ATRTQIVSSTAIAVLGVICAILGTFSSVAKIAE 432 (434)
Q Consensus 371 ~~~l~G~~~~~~~~~ilP~l~~l~~~~~~----------~~~~~~~~~~~~~~~g~~~~v~g~~~si~~ii~ 432 (434)
-.-+.|++-+.=+..++|+...+..++++ .++.+-....+...+|++...++..-|...+.+
T Consensus 46 ~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 46 EVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred hheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34445555666677888999999987652 123334556666777777777777766666543
No 143
>PF04133 Vps55: Vacuolar protein sorting 55 ; InterPro: IPR007262 Vps55 is involved in the secretion of the Golgi form of the soluble vacuolar carboxypeptidase Y, but not the trafficking of the membrane-bound vacuolar alkaline phosphatase. Both Vps55 and obesity receptor gene-related protein are important for functioning membrane trafficking to the vacuole/lysosome of eukaryotic cells [].
Probab=22.58 E-value=4e+02 Score=21.17 Aligned_cols=44 Identities=18% Similarity=0.064 Sum_probs=27.4
Q ss_pred HHHHHhhhccccchhHHHHHhhcHH--HHHHHHHHHHHHHHHHHHH
Q 013919 53 FNGINVMAGVGLLSTPYTVKEAGWA--SLVVLLLFAVVCCYTASLM 96 (434)
Q Consensus 53 ~~l~~~~iG~Gil~lP~a~~~~G~~--g~~~l~~~~~~~~~~~~~l 96 (434)
....++.+=.+-+++|..++++|.+ |...+.+.|-+..|.....
T Consensus 64 ~~FlT~~~vvSg~aLP~VL~H~~~I~~~A~~l~l~g~~ii~~ti~~ 109 (120)
T PF04133_consen 64 GKFLTGFLVVSGFALPIVLAHAGIIQWGACGLSLAGGVIIYATIIG 109 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 3333333333447899999999987 5555666666555555443
No 144
>COG5264 VTC1 Vacuolar transporter chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=22.30 E-value=3.4e+02 Score=21.53 Aligned_cols=50 Identities=14% Similarity=0.043 Sum_probs=32.0
Q ss_pred CchHHHHHHHHHhhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhh
Q 013919 46 CSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCF 100 (434)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~ 100 (434)
.+|.+....+-+ +|.++++.-. +.|-. +.+..++.-.+..|+..++.+-+
T Consensus 36 l~wl~~~vllg~--l~~~l~n~~~---~~g~~~a~vftivaif~~~ya~~lY~kRa 86 (126)
T COG5264 36 LSWLSVTVLLGG--LGFALYNSGD---RLGMISAYVFTIVAIFCGFYALMLYLKRA 86 (126)
T ss_pred HHHHHHHHHHHH--HHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556555544433 6766666655 77877 66666666677777777776543
No 145
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=22.26 E-value=3.4e+02 Score=22.56 Aligned_cols=57 Identities=11% Similarity=0.068 Sum_probs=34.4
Q ss_pred HhHHHHHHHHHHhhHHHHHHHh-ccccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013919 375 IGSLLSILVAIIMPSLCFIKIL-GRKATRTQIVSSTAIAVLGVICAILGTFSSVAKIA 431 (434)
Q Consensus 375 ~G~~~~~~~~~ilP~l~~l~~~-~~~~~~~~~~~~~~~~~~g~~~~v~g~~~si~~ii 431 (434)
.|+-.+....|+.|-+.+.... ..+.-...+-...+-+++|+..++.++..+.....
T Consensus 35 ~~g~~~~~~gF~~Pt~y~~yk~~~~~gv~~~~~~pflSf~lG~~~m~~~~~~~~k~~y 92 (152)
T PF07954_consen 35 LGGYGGFMAGFFAPTAYYRYKTGAIKGVPVPRQKPFLSFLLGLGAMMAGSQLAGKYQY 92 (152)
T ss_pred HHHHHHHHHHHhhHHHHHHHhcccccCCcCCccCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 3444577788999988776411 11111111244566788899988888876655443
No 146
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=21.92 E-value=8e+02 Score=24.44 Aligned_cols=29 Identities=7% Similarity=-0.115 Sum_probs=16.9
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhHHH
Q 013919 256 ADKTKFTKALITCFALCVLIYGGVAVMGF 284 (434)
Q Consensus 256 ~~p~~~~~~~~~s~~~~~~~Y~~~g~~gy 284 (434)
+|+++.++....+.....++-.+.+...+
T Consensus 306 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 334 (464)
T PRK00187 306 GRLLEARRAGRVGIGFGAVVMLLFAGLFW 334 (464)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777666666655444444333
No 147
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=21.65 E-value=8.1e+02 Score=24.39 Aligned_cols=32 Identities=25% Similarity=0.499 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHhhccc--HHHHHHHHhHH
Q 013919 347 FILLRTALVFSSVCAAFLLPF--FSLVMALIGSL 378 (434)
Q Consensus 347 ~~~~~~~~~~~~~~la~~~p~--~~~~~~l~G~~ 378 (434)
.+...+++++...+.+.++|+ +..+...+|-+
T Consensus 111 ~W~~K~l~l~~l~v~~FfiP~~~f~~~~~~v~~~ 144 (429)
T PF03348_consen 111 FWFLKFLLLIGLIVGAFFIPNGSFINVYMYVARV 144 (429)
T ss_pred hHHHHHHHHHHHHheeEEeCchHHHHHHHHHHHH
Confidence 456778888888888999997 33333334444
No 148
>PLN00151 potassium transporter; Provisional
Probab=21.52 E-value=1.1e+03 Score=25.79 Aligned_cols=142 Identities=12% Similarity=0.119 Sum_probs=65.1
Q ss_pred chhhHHHHHHHhccCccchhhHHhhccchhh-hHHHHHHHHHHHHHHHHHHHhHHHHhhcC-CchhhhhhcCCCchhHHH
Q 013919 230 GMPFAIGIYGFCYSGHSVFPNIYQSMADKTK-FTKALITCFALCVLIYGGVAVMGFLMFGQ-GTLSQITLNMPPHAFASK 307 (434)
Q Consensus 230 ~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~-~~~~~~~s~~~~~~~Y~~~g~~gy~~fg~-~~~~~il~~~~~~~~~~~ 307 (434)
+-+..+|.++.+..|-+. ++++|-+=.+ --+..+...+..+++---+|-..|+.-.. ......-...|++..+..
T Consensus 345 ~gw~~LGgVvLciTGaEA---LfADLGHFg~~sIqiaw~~~V~P~LlL~Y~GQaA~L~~~p~~~~npFy~svP~~~~wP~ 421 (852)
T PLN00151 345 KAWSALGGCVLCATGSEA---MFADLGYFSVRSIQLAFTCLVLPCLLLAYMGQAAYLMKNPDSAEQIFFSSVPSSLFWPV 421 (852)
T ss_pred ceEEEecceeeeeccchh---hhcccCCCCccceeeeehhhHHHHHHHHHcchHHHHhcCcccccCcHHHhCCchhHHHH
Confidence 444577778888888884 4455543221 11233333344444333345555554332 223334445565543321
Q ss_pred HHHHHHHHHHhhhhcchhcchHHHHH-----hhcCCC-------CCChhHHHHHHHHHHHHHHHHHHhhcccHHHHHHHH
Q 013919 308 VAVWTTVINPFTKYALLMNPLARSIE-----ELLPAG-------ISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALI 375 (434)
Q Consensus 308 v~~~~~~~~~~~s~pl~~~~~~~~~~-----~~~~~~-------~~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~l~ 375 (434)
+ .+....+++.|-.+. ......+. ..+|+- +...+..-..++.++.+.+..+...+.+-..+-+--
T Consensus 422 ~-vlAtlAaIIASQA~I-SgtFSii~Qai~Lg~fPRvkIvHTS~~~~GQIYIP~vNw~Lmv~~i~v~l~F~~s~~l~~AY 499 (852)
T PLN00151 422 F-LIANLAALIASRAMT-TATFSCIKQSMALGCFPRLKIIHTSRKFMGQIYIPVINWFLLVMCLVVVCSFRSITDIGNAY 499 (852)
T ss_pred H-HHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHhheeeecCHHHHHHHh
Confidence 1 122223333333333 12222222 234543 122333444456666667776766666555444444
Q ss_pred h
Q 013919 376 G 376 (434)
Q Consensus 376 G 376 (434)
|
T Consensus 500 G 500 (852)
T PLN00151 500 G 500 (852)
T ss_pred h
Confidence 3
No 149
>PF07695 7TMR-DISM_7TM: 7TM diverse intracellular signalling; InterPro: IPR011623 This entry represents the transmembrane region of the 7TM-DISM (7TM Receptors with Diverse Intracellular Signalling Modules) [].
Probab=20.86 E-value=5.1e+02 Score=21.82 Aligned_cols=84 Identities=11% Similarity=0.145 Sum_probs=32.9
Q ss_pred HhhcCCCCCChhHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHHHHHHhhHHHHHHHhccccchhhHhhhHHHH
Q 013919 333 EELLPAGISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILGRKATRTQIVSSTAIA 412 (434)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~l~G~~~~~~~~~ilP~l~~l~~~~~~~~~~~~~~~~~~~ 412 (434)
.+.++.++ +++..|.............+.....+.................+.+-...+.. +|++++.......+...
T Consensus 85 ~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~a~~~~~~~~~~ 162 (205)
T PF07695_consen 85 RSFLELKR-HPRLRRLLLILLILFALLILLLPLFYYDSALVLFSLFALIIILLILIIIIYAW-RKGNRPARYFLIGWLLF 162 (205)
T ss_pred HHHhCccc-CchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCccHHHHHHHHHHH
Confidence 34444433 33444444333333222222222224444444444443333333333333333 34443333333444444
Q ss_pred HHHHHH
Q 013919 413 VLGVIC 418 (434)
Q Consensus 413 ~~g~~~ 418 (434)
..+.+.
T Consensus 163 ~~~~~~ 168 (205)
T PF07695_consen 163 LLSSLI 168 (205)
T ss_pred HHHHHH
Confidence 444444
No 150
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.48 E-value=2.8e+02 Score=21.57 Aligned_cols=35 Identities=17% Similarity=0.103 Sum_probs=18.3
Q ss_pred HHHHhhhccccchhHHHHHhhcHHHHHHHHHHHHH
Q 013919 54 NGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVV 88 (434)
Q Consensus 54 ~l~~~~iG~Gil~lP~a~~~~G~~g~~~l~~~~~~ 88 (434)
.+-+.++|+++==+---|+.+...|.+.+++.|..
T Consensus 52 fIsGilVGa~iG~llD~~agTsPwglIv~lllGf~ 86 (116)
T COG5336 52 FISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFG 86 (116)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 34456666664333334555555566655555544
Done!