Query 013920
Match_columns 434
No_of_seqs 149 out of 1484
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 19:34:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013920.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013920hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p9d_H T-complex protein 1 sub 100.0 1.3E-96 4E-101 768.9 42.4 432 1-434 1-443 (568)
2 1q3q_A Thermosome alpha subuni 100.0 6.3E-93 2.1E-97 739.0 47.7 418 11-434 9-431 (548)
3 3ruv_A Chaperonin, CPN; double 100.0 1.1E-92 3.7E-97 736.5 48.7 416 12-434 6-424 (543)
4 3iyg_A T-complex protein 1 sub 100.0 3E-92 1E-96 731.7 49.9 411 18-434 3-426 (529)
5 3ko1_A Chaperonin; 9-fold symm 100.0 4E-93 1.4E-97 739.8 43.2 418 11-434 16-438 (553)
6 3iyg_G T-complex protein 1 sub 100.0 4.2E-92 1.4E-96 728.4 49.8 411 18-434 2-419 (515)
7 1a6d_B Thermosome (beta subuni 100.0 9.4E-93 3.2E-97 737.6 44.7 418 11-434 7-429 (543)
8 3iyg_H T-complex protein 1 sub 100.0 7.4E-92 2.5E-96 725.9 48.6 410 15-434 1-420 (515)
9 1a6d_A Thermosome (alpha subun 100.0 3.6E-92 1.2E-96 732.8 44.4 416 11-434 8-428 (545)
10 3iyg_Q T-complex protein 1 sub 100.0 2.3E-91 7.9E-96 723.0 49.9 416 16-434 1-416 (512)
11 3iyg_B T-complex protein 1 sub 100.0 5.9E-91 2E-95 719.5 49.8 410 17-434 2-417 (513)
12 3iyg_D T-complex protein 1 sub 100.0 1.2E-90 4E-95 718.1 48.5 411 19-434 5-424 (518)
13 3iyg_E T-complex protein 1 sub 100.0 2E-90 6.7E-95 716.6 48.7 412 19-434 4-420 (515)
14 3p9d_G T-complex protein 1 sub 100.0 2.6E-92 8.9E-97 733.9 32.9 424 1-434 1-433 (550)
15 3p9d_A T-complex protein 1 sub 100.0 3.5E-91 1.2E-95 726.7 41.3 423 5-434 5-442 (559)
16 3p9d_D T-complex protein 1 sub 100.0 2.9E-91 1E-95 723.5 37.3 416 14-434 8-434 (528)
17 3iyg_Z T-complex protein 1 sub 100.0 1E-89 3.4E-94 710.3 45.2 404 22-434 7-423 (517)
18 3p9d_E T-complex protein 1 sub 100.0 9.2E-90 3.2E-94 716.5 41.3 412 19-434 39-463 (562)
19 3p9d_C T-complex protein 1 sub 100.0 3.9E-90 1.4E-94 719.0 36.8 418 11-434 5-492 (590)
20 3p9d_F T-complex protein 1 sub 100.0 2.3E-90 8E-95 720.0 32.5 418 13-434 5-438 (546)
21 3p9d_B T-complex protein 1 sub 100.0 7.8E-89 2.7E-93 706.4 29.0 413 12-434 4-424 (527)
22 3aq1_B Thermosome subunit; gro 100.0 2.7E-82 9.4E-87 652.9 33.5 376 54-434 1-382 (500)
23 1we3_A CPN60(groel); chaperoni 100.0 8E-73 2.7E-77 585.6 41.4 361 25-434 9-433 (543)
24 1kp8_A Groel protein; chaperon 100.0 7.8E-73 2.7E-77 584.9 39.3 357 25-430 9-430 (547)
25 1iok_A Chaperonin 60; chaperon 100.0 3.6E-73 1.2E-77 587.8 29.8 358 25-430 10-431 (545)
26 3rtk_A 60 kDa chaperonin 2; he 100.0 4.6E-72 1.6E-76 577.6 28.0 357 25-429 9-428 (546)
27 1gml_A T-complex protein 1 sub 100.0 6.1E-40 2.1E-44 292.6 18.0 171 214-385 1-174 (178)
28 1ass_A Thermosome; chaperonin, 100.0 8.2E-35 2.8E-39 254.3 14.4 151 220-370 1-153 (159)
29 3m6c_A 60 kDa chaperonin 1; ch 99.1 1.9E-09 6.6E-14 94.2 15.1 114 217-354 2-140 (194)
30 1srv_A Protein (groel (HSP60 c 99.1 5.8E-10 2E-14 93.0 10.7 110 222-355 1-135 (145)
31 3osx_A 60 kDa chaperonin; alph 99.0 1.1E-08 3.8E-13 89.6 16.3 110 221-354 13-147 (201)
32 1eo1_A Hypothetical protein MT 77.1 7.2 0.00025 31.1 7.2 51 282-333 58-108 (124)
33 1o13_A Probable NIFB protein; 74.7 6.2 0.00021 32.3 6.2 52 281-333 68-119 (136)
34 2yx6_A Hypothetical protein PH 72.6 7.9 0.00027 30.7 6.3 53 280-333 54-106 (121)
35 2wfb_A Putative uncharacterize 71.0 8.1 0.00028 30.6 6.0 51 281-332 59-110 (120)
36 1rdu_A Conserved hypothetical 66.4 9.2 0.00031 30.0 5.3 51 282-333 55-105 (116)
37 2re2_A Uncharacterized protein 58.5 18 0.00062 29.4 5.9 50 281-332 71-120 (136)
38 3v7e_A Ribosome-associated pro 52.9 28 0.00096 25.5 5.6 50 280-332 18-71 (82)
39 2lbw_A H/ACA ribonucleoprotein 51.2 38 0.0013 26.9 6.5 49 280-331 27-80 (121)
40 2xzm_U Ribosomal protein L7AE 50.1 36 0.0012 27.3 6.2 50 280-332 31-85 (126)
41 3psh_A Protein HI_1472; substr 47.6 33 0.0011 31.9 6.6 52 282-333 77-154 (326)
42 2r79_A Periplasmic binding pro 46.3 43 0.0015 30.4 7.1 52 282-333 52-111 (283)
43 3md9_A Hemin-binding periplasm 46.2 45 0.0015 29.6 7.1 52 282-333 52-111 (255)
44 2q8p_A Iron-regulated surface 45.7 22 0.00075 31.8 4.8 52 282-333 53-110 (260)
45 2qtd_A Uncharacterized protein 45.3 43 0.0015 25.5 5.8 48 283-332 50-97 (105)
46 2r7a_A Bacterial heme binding 44.3 49 0.0017 29.4 7.0 52 282-333 52-112 (256)
47 1n2z_A Vitamin B12 transport p 43.5 34 0.0012 30.3 5.7 51 282-332 50-107 (245)
48 3v7q_A Probable ribosomal prot 42.7 63 0.0022 24.6 6.4 51 280-333 26-80 (101)
49 2ale_A SNU13, NHP2/L7AE family 41.8 35 0.0012 27.8 4.9 51 279-332 38-93 (134)
50 2wi8_A Iron-uptake system-bind 41.1 47 0.0016 30.6 6.5 52 282-333 89-144 (311)
51 3on1_A BH2414 protein; structu 40.3 61 0.0021 24.6 5.9 51 280-333 25-79 (101)
52 4a18_G RPL30; ribosome, eukary 39.1 93 0.0032 23.7 6.9 52 278-332 27-83 (104)
53 2etv_A Iron(III) ABC transport 37.9 42 0.0014 31.6 5.7 52 282-333 89-151 (346)
54 4hn9_A Iron complex transport 36.0 56 0.0019 30.5 6.2 51 282-333 109-165 (335)
55 1xbi_A 50S ribosomal protein L 34.0 58 0.002 25.7 5.0 50 280-332 36-90 (120)
56 2aif_A Ribosomal protein L7A; 33.7 69 0.0023 25.9 5.5 51 279-332 47-102 (135)
57 3tny_A YFIY (ABC transport sys 31.7 36 0.0012 31.2 4.0 52 282-333 89-144 (303)
58 3cpq_A 50S ribosomal protein L 31.0 1.4E+02 0.0047 23.0 6.7 51 279-332 27-82 (110)
59 3iz5_f 60S ribosomal protein L 30.2 99 0.0034 24.1 5.7 51 279-332 32-87 (112)
60 1vq8_F 50S ribosomal protein L 29.3 90 0.0031 24.5 5.4 51 279-332 35-90 (120)
61 2fc3_A 50S ribosomal protein L 29.0 94 0.0032 24.6 5.5 51 279-332 34-89 (124)
62 2pw9_A Putative formate dehydr 27.9 61 0.0021 29.6 4.7 39 281-319 207-245 (268)
63 3u5e_c L32, RP73, YL38, 60S ri 27.6 1.5E+02 0.005 22.6 6.3 51 279-332 28-83 (105)
64 3o85_A Ribosomal protein L7AE; 26.0 1E+02 0.0035 24.3 5.2 51 279-332 37-92 (122)
65 2zkr_f 60S ribosomal protein L 25.9 1.4E+02 0.0048 27.2 6.6 51 280-330 142-197 (266)
66 1rlg_A 50S ribosomal protein L 23.7 82 0.0028 24.7 4.2 51 279-332 33-88 (119)
67 3gfv_A Uncharacterized ABC tra 22.2 1.1E+02 0.0038 27.8 5.4 51 282-333 88-146 (303)
68 1w41_A 50S ribosomal protein L 21.6 2.2E+02 0.0074 21.3 6.2 51 279-332 22-77 (101)
69 1p90_A NAFY protein, hypotheti 21.3 94 0.0032 25.4 4.2 46 288-334 66-115 (145)
70 2ooa_A E3 ubiquitin-protein li 21.0 1.8E+02 0.0063 19.3 4.6 33 112-144 13-48 (52)
71 2kg4_A Growth arrest and DNA-d 20.9 61 0.0021 27.3 2.9 50 280-329 42-104 (165)
72 1pq4_A Periplasmic binding pro 20.7 1.8E+02 0.0063 26.5 6.6 29 280-308 228-256 (291)
73 1gtz_A 3-dehydroquinate dehydr 20.7 1.3E+02 0.0044 25.0 4.8 65 233-310 1-69 (156)
74 3fst_A 5,10-methylenetetrahydr 20.3 3.3E+02 0.011 25.1 8.3 59 274-336 165-233 (304)
75 3jyw_G 60S ribosomal protein L 20.2 72 0.0025 25.0 3.1 50 281-333 33-87 (113)
76 2jnb_A NHP2-like protein 1; sp 20.2 33 0.0011 28.3 1.1 51 279-332 56-111 (144)
No 1
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h*
Probab=100.00 E-value=1.3e-96 Score=768.94 Aligned_cols=432 Identities=43% Similarity=0.755 Sum_probs=408.6
Q ss_pred CCCCCCCcccccccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccCh
Q 013920 1 MGFSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP 80 (434)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP 80 (434)
|+|++|+.+...+|++|+++++|.++++..|+.||..|++++||||||+||+|||+++.|+++|||||+|||++|+++||
T Consensus 1 ~~~~~~~~~~~~~l~~~~~~~~g~~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hP 80 (568)
T 3p9d_H 1 MSLRLPQNPNAGLFKQGYNSYSNADGQIIKSIAAIRELHQMCLTSMGPCGRNKIIVNHLGKIIITNDAATMLRELDIVHP 80 (568)
T ss_dssp ----CCCCCCCSSCCSSCCBCCCHHHHHHHHHHHHHHHHHHHHTTSSSSSCEEEEECTTSCEEEESCHHHHTTTCCCCCH
T ss_pred CCCCCCCcchhhhhhcCccccccHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCCH
Confidence 89999998999999999999999778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhCCCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHH
Q 013920 81 AAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEE 160 (434)
Q Consensus 81 ~a~ll~~~~~~~~~~~GDGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 160 (434)
+|+|++++|++|++++||||||+++||++||+++.+++.+|+||..|++||+.|++.++++|++++++... +..+++.
T Consensus 81 ~Akll~e~a~~qd~e~GDGTTtvvvLa~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~e~L~~~a~~v~~--~~~~~~~ 158 (568)
T 3p9d_H 81 AVKVLVMATEQQKIDMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEIT--DKNDKNE 158 (568)
T ss_dssp HHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCCSCCC--CCCTTHH
T ss_pred HHHHHHHHHHhhhceeCCCceehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCC--CCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987432 5567899
Q ss_pred HHHHHHHhhcccccCchhhHHHHHHHHHHHhCCC-----CCCCccccceEEEEcCCCCcccceeeeeEEEeecCCCCcce
Q 013920 161 VIYRMKAAVASKQFGQEEILCPLIADACIQVCPK-----NPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKN 235 (434)
Q Consensus 161 l~~i~~t~l~sk~~~~~~~ls~Lv~~ai~~v~~~-----~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~~~~~~ 235 (434)
|.++++|+++||+.++.++|++|+++|+.+++++ +..+||+++|+|++++|++++||++++|++|++++.+||++
T Consensus 159 l~~va~tsl~sK~~~~~~~i~~livdAv~~V~~~~~~~~~~~~~dl~~I~I~k~~Ggs~~dS~lv~G~v~dk~~~~m~~~ 238 (568)
T 3p9d_H 159 LLKMIKPVISSKKYGSEDILSELVSEAVSHVLPVAQQAGEIPYFNVDSIRVVKIMGGSLSNSTVIKGMVFNREPEGHVKS 238 (568)
T ss_dssp HHHHHHHHHTTTSTTCHHHHHHHHHHHHTTSCC---------CCCGGGCEEEEEESSCGGGCEEESSCCBSSCBSSGGGS
T ss_pred HHHHHHHHhhccCcchHHHHHHHHHHHHHHHhhccccccCCcccccceEEEEEccCCCcchheeeccEEEeecccCCcEE
Confidence 9999999999997654599999999999999874 33468999999999999999999999999999999999999
Q ss_pred ee---cceEEEEeeeccccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCe
Q 013920 236 ME---KAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKL 312 (434)
Q Consensus 236 ~~---n~kIlll~~~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I 312 (434)
++ ||||++++|+|++++++.++++.+++++++.++.++|++++++++++|.+.|+||||++++|++.+++||.++||
T Consensus 239 i~~~~n~kIlll~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~I~~~al~~L~~~gI 318 (568)
T 3p9d_H 239 LSEDKKHKVAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGAGVGELALHYLNRYGI 318 (568)
T ss_dssp CCCCSSCEEEEECSCSSSCCCSSSCEEECCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECSCCCHHHHHHHHHHTC
T ss_pred EecCCcceEEEEccCccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEECCCcChHHHHHHHHCCe
Confidence 99 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcceeeEEEEEEcceEEEEEeecCC-CCceEEEEEecCCHhHHHHHH
Q 013920 313 MVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGG-GNSVSTVVLRGSTDSILDDLE 391 (434)
Q Consensus 313 ~~v~~v~~~~L~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~-~~~~~TIllrG~t~~~l~e~~ 391 (434)
++|+++++.+|+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|+. ++++|||+|||+|+.+++|.|
T Consensus 319 ~av~~v~~~~leria~~tGa~ivs~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~l~~~~~TIllrG~t~~~l~E~e 398 (568)
T 3p9d_H 319 LVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETVKTMEIGGDRVTVFKQEQGEISRTSTIILRGATQNNLDDIE 398 (568)
T ss_dssp EEECCCCHHHHHHHHHHHSCCCCSSSSCCCGGGCEECSCCCCCEETTEECBCCCCCSSSCCSSCEEEEEESCHHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHhCCEEEeccccCCHHHCCcceEEEEEEecCceEEEEecCCCCCCCeEEEEECCCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999972 378999999999999999999
Q ss_pred HHHHHHHHHHHHhhc--CCeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013920 392 RAVDDGVNTYKAMCR--DSRIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 392 ~~i~dal~~~~~~~~--~~~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
|+++||++++|++++ ++++|||||++|++|+.+|++++.+++|
T Consensus 399 r~i~DAL~vvr~av~~~d~~iVpGGGa~E~~ls~~L~~~a~~~~g 443 (568)
T 3p9d_H 399 RAIDDGVAAVKGLMKPSGGKLLPGAGATEIELISRITKYGERTPG 443 (568)
T ss_dssp HHHHHHHHHHHHTTSTTCCCCCCTTTHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHhcccCCeEEeCCcHHHHHHHHHHHHHhccCCc
Confidence 999999999999999 9999999999999999999999988876
No 2
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A
Probab=100.00 E-value=6.3e-93 Score=738.99 Aligned_cols=418 Identities=32% Similarity=0.567 Sum_probs=400.2
Q ss_pred ccccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHH
Q 013920 11 QSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGK 90 (434)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~ 90 (434)
..+++++.+..+| ++++..|+.||.+|++++||||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|+
T Consensus 9 ~~~l~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~ 87 (548)
T 1q3q_A 9 VVILPEGTQRYVG-RDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPAAKMMVEVAK 87 (548)
T ss_dssp CCCSCTTCEEEEH-HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTCCEEEESCHHHHHHHSCCCSHHHHHHHHHHH
T ss_pred cccccCCcceech-HHHHHHHHHHHHHHHHHHHhccCCCCceEEEEcCCCCeEEECCHHHHHHHhhccchHHHHHHHHHH
Confidence 4578999888888 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhCCCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhc
Q 013920 91 AQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVA 170 (434)
Q Consensus 91 ~~~~~~GDGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~ 170 (434)
+|++++||||||+++||++||+++++++++|+||..|++||+.|++.++++|+++++++ +..|++.|.++++|+++
T Consensus 88 ~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v----~~~d~~~l~~va~tsl~ 163 (548)
T 1q3q_A 88 TQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRV----DPDDEETLLKIAATSIT 163 (548)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEEC----CTTCHHHHHHHHHHHSC
T ss_pred hcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCCC----CCCCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999873 44578999999999999
Q ss_pred cccc-CchhhHHHHHHHHHHHhCCC--CCCCccccceEEEEcCCCCcccceeeeeEEEeecCC--CCcceeecceEEEEe
Q 013920 171 SKQF-GQEEILCPLIADACIQVCPK--NPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFA 245 (434)
Q Consensus 171 sk~~-~~~~~ls~Lv~~ai~~v~~~--~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~--~~~~~~~n~kIlll~ 245 (434)
||++ +|+++|++|+++|+.+++++ +..++|+++|+|++++|++++||++++|++|++++. .||++++||||++++
T Consensus 164 sKi~~~~~~~i~~livdAv~~V~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~ 243 (548)
T 1q3q_A 164 GKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALIN 243 (548)
T ss_dssp SSTTGGGHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEEEEBSCGGGCEEESSEEESCCCSSTTSCSEESSEEEEEEC
T ss_pred ccccccchHHHHHHHHHHHHHhccccCCCccccCCeEEEEEecCCCccceEEEeeEEEeccCCCCCCcceecCCEEEEEe
Confidence 9965 68899999999999999865 224688899999999999999999999999999985 689999999999999
Q ss_pred eeccccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHH
Q 013920 246 GGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRR 325 (434)
Q Consensus 246 ~~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ 325 (434)
++|++++++.++++.++++++++.++++|++++++++++|.+.|+||||++++|++.+++||.++||++|+++++++|+|
T Consensus 244 ~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~le~ 323 (548)
T 1q3q_A 244 EALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEK 323 (548)
T ss_dssp SCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHH
T ss_pred cCcCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEEEcCCcCHHHHHHHHHCCcEEEccCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeecccCCCCCCCCCcceeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhh
Q 013920 326 FCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMC 405 (434)
Q Consensus 326 ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~ 405 (434)
||++|||++++++++++++++|+|+.|++.++|+++|++|++|+. ++.|||+|||+|+.+++|.||+++||++++|+++
T Consensus 324 ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~-~~~~TI~lrG~te~~l~E~er~l~DAl~~~r~a~ 402 (548)
T 1q3q_A 324 LAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKN-PKAVTILIRGGTEHVIDEVERALEDAVKVVKDVM 402 (548)
T ss_dssp HHHHHCCCCBSSGGGCCGGGCEEESEEEEEEETTEEEEEEECCSS-CSSEEEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCeEecccccCCHHHCCCceEEEEEEecCceEEEEecCCC-CCeEEEEECCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999984 8999999999999999999999999999999999
Q ss_pred cCCeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013920 406 RDSRIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 406 ~~~~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
++|++|||||++|++|+.+|++++.+++|
T Consensus 403 ~~~~ivpGGGa~e~~~~~~L~~~~~~~~g 431 (548)
T 1q3q_A 403 EDGAVLPAGGAPEIELAIRLDEYAKQVGG 431 (548)
T ss_dssp HSCEEEECTTHHHHHHHHHHHHHHHHHCH
T ss_pred HCCCcccCCcHHHHHHHHHHHHHhhhcCC
Confidence 99999999999999999999999876553
No 3
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Probab=100.00 E-value=1.1e-92 Score=736.49 Aligned_cols=416 Identities=28% Similarity=0.500 Sum_probs=400.4
Q ss_pred cccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHHh
Q 013920 12 SMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKA 91 (434)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~ 91 (434)
.+|++++++.+| ++++..|+.||..|++++||||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++
T Consensus 6 ~~l~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~ 84 (543)
T 3ruv_A 6 GVLPENMKRYMG-RDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKT 84 (543)
T ss_dssp CSSCSSEEEEET-HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTSCEEEECCHHHHHHHSCCCCHHHHHHHHHHHH
T ss_pred eeecCCcchhcc-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHHHH
Confidence 788999999999 6999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhCCCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhcc
Q 013920 92 QQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVAS 171 (434)
Q Consensus 92 ~~~~~GDGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~s 171 (434)
|++++||||||+++||++||+++.+++.+|+||..|++||+.|.+.++++|++++++. +..+++.|.++++|+++|
T Consensus 85 qd~e~GDGTTtvvVLA~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v----~~~d~~~L~~va~tsl~s 160 (543)
T 3ruv_A 85 QEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEV----GAQDKEILTKIAMTSITG 160 (543)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHCEEC----CTTCHHHHHHHHHHHHHH
T ss_pred HHhhhCCCcccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhCCC----CCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999873 556799999999999999
Q ss_pred cc-cCchhhHHHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccceeeeeEEEeecCC--CCcceeecceEEEEeeec
Q 013920 172 KQ-FGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGV 248 (434)
Q Consensus 172 k~-~~~~~~ls~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~--~~~~~~~n~kIlll~~~l 248 (434)
|+ ..++++|++|+++|+.++++++ ..||+++|+|++++|++..||++++|++|++++. .|++.++||||++++++|
T Consensus 161 K~~~~~~~~i~~livdAv~~V~~~~-g~~dl~~I~V~k~~Gg~~~ds~lv~G~v~dk~~~~~~m~~~~~n~kIll~~~~L 239 (543)
T 3ruv_A 161 KGAEKAKEKLAEIIVEAVSAVVDDE-GKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAI 239 (543)
T ss_dssp TCGGGCCHHHHHHHHHHHHHHCCTT-SCCCGGGEEEEEEECSCGGGCEEESSEEESCCCSCTTSCSEEEEEEEEEESSCB
T ss_pred cccchhHHHHHHHHHHHHHHhhccC-CCcccceEEEEEcCCCCcccceeecceEEeccccCccccccccCcEEEEEcccc
Confidence 95 4678999999999999998752 2489999999999999999999999999999984 689999999999999999
Q ss_pred cccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHH
Q 013920 249 DTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCR 328 (434)
Q Consensus 249 ~~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia~ 328 (434)
++++++.++++.+++++++.+++++|++++++++++|.+.|+||||++++|++.+++||.++||++++++++++|+|||+
T Consensus 240 e~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~ve~I~~~g~~vvi~~~~I~~~al~~L~~~gI~~v~~v~k~~le~ia~ 319 (543)
T 3ruv_A 240 EIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAK 319 (543)
T ss_dssp SCCCCSSCCCEEECSTTHHHHHHHHHHHHHHHHHHHHHHHTCSEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHH
T ss_pred cccccccCceeEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHcCcEEEeeCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeecccCCCCCCCCCcceeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcCC
Q 013920 329 TTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDS 408 (434)
Q Consensus 329 ~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~~ 408 (434)
+|||++++++++++++++|+|+.|+++++|+++|++|++|+. ++.|||+|||+|+.+++|.||+++||++++|+++++|
T Consensus 320 ~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~-~~~~TI~lrG~te~~l~E~kr~l~DAl~~~r~av~~g 398 (543)
T 3ruv_A 320 ATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEECKH-PKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDG 398 (543)
T ss_dssp HHCCCEESCGGGCCGGGCEEEEEEEEEEETTEEEEEEECCSS-CSSEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhCCceecccccCCHHHCCcccEEEEEEeCCceEEEEECCCC-CceeEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999984 8999999999999999999999999999999999999
Q ss_pred eEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013920 409 RIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 409 ~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
++|||||++|++|+.+|++++.+++|
T Consensus 399 ~iVpGGGa~e~~~s~~L~~~~~~~~g 424 (543)
T 3ruv_A 399 RIVSGGGSTEVELSMKLREYAEGISG 424 (543)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHTCCT
T ss_pred CeecCCcHHHHHHHHHHHHHhhcCCh
Confidence 99999999999999999999988775
No 4
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=3e-92 Score=731.71 Aligned_cols=411 Identities=26% Similarity=0.451 Sum_probs=390.5
Q ss_pred cccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHHhhhhhhC
Q 013920 18 HKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIG 97 (434)
Q Consensus 18 ~~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~G 97 (434)
+++.+| ++++..|+.||..|++++||||||+||+|||+++.|+++|||||+|||++|+++||+|+|+++++++|++++|
T Consensus 3 ~~~~~g-~~a~~~ni~a~~~la~~v~ttlGP~G~~kml~~~~g~~~iTnDG~tIlk~i~v~hP~akll~~~a~~qd~e~G 81 (529)
T 3iyg_A 3 GDRSTG-EAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVG 81 (529)
T ss_pred cchhch-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCChHHHHHHHHHHHhhhhhC
Confidence 456667 6999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHh-hhhcccCCCCCCCHHHHHHHHHHhhcccc-cC
Q 013920 98 DGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEE-LVEEGSENMDVRNTEEVIYRMKAAVASKQ-FG 175 (434)
Q Consensus 98 DGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~i~~t~l~sk~-~~ 175 (434)
|||||+++||++||++|.+++++|+||..|++||+.|.+.++++|++ ++++. +..+++.|.++++|+++||+ .+
T Consensus 82 DGTTtvvvLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~s~~v----~~~~~e~l~~va~tsl~sK~~~~ 157 (529)
T 3iyg_A 82 DGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINT----DELGRDCLINAAKTSMSSKVIGI 157 (529)
T ss_pred CChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC----CCCCHHHHHHHHHHHhccCcccc
Confidence 99999999999999999999999999999999999999999999998 88763 44578999999999999995 46
Q ss_pred chhhHHHHHHHHHHHhCC---CCCCCccccceEEEEcCCCCcccceeeeeEEEeecCC--CCcceeecceEEEEeeeccc
Q 013920 176 QEEILCPLIADACIQVCP---KNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDT 250 (434)
Q Consensus 176 ~~~~ls~Lv~~ai~~v~~---~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~--~~~~~~~n~kIlll~~~l~~ 250 (434)
++++|++|+++|+..+++ ++...||+++|+|++++|+++.||++++|++|++++. .||+.++||||++++++|++
T Consensus 158 ~~~~i~~livdAv~~V~~~~~~g~~~~dv~~I~I~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIlll~~~le~ 237 (529)
T 3iyg_A 158 NGDFFANLVVDAVLAIKYTDIRGQPRYPVNSINVLKAHGRSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQK 237 (529)
T ss_pred cHHHHHHHHHHHHHHHhhhccCCCcccccceEEEEEecCCCccceEEEeeeEEecCcccccCCcccCCceEEEecCCccc
Confidence 789999999999999973 3335788999999999999999999999999999874 69999999999999999999
Q ss_pred cccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHh
Q 013920 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTT 330 (434)
Q Consensus 251 ~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia~~t 330 (434)
++++.++++.+++++++..+.++|++++++++++|.+.|+||||++++|++.+++||.++||++++++++++|+|||++|
T Consensus 238 ~k~e~~~~v~i~~~~~~~~i~~~E~~~l~~~v~kI~~~g~nvvi~~~~I~d~al~~L~~~gI~av~~v~k~~leria~~t 317 (529)
T 3iyg_A 238 TKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKAS 317 (529)
T ss_pred ccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCceeccCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeecccCCCCC------CCCCcceeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHh
Q 013920 331 GAVAMLKLCQPN------PDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAM 404 (434)
Q Consensus 331 Ga~ii~~~~~l~------~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~ 404 (434)
||++++++++++ ++++|+|+.|+++++|+++|++|++|+. +++|||+|||+|+.+++|.||+++||++++|++
T Consensus 318 Ga~iv~~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~-~~~~TI~lrG~t~~~l~E~er~l~Dal~v~r~~ 396 (529)
T 3iyg_A 318 GATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKA-RTSASVILRGANDFMCDEMERSLHDALCVVKRV 396 (529)
T ss_pred CCeeecchhcccchhccChhhCccceEEEEEEeCCceEEEEEcCCC-CceEEEEECCchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987765 5789999999999999999999999984 889999999999999999999999999999999
Q ss_pred hcCCeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013920 405 CRDSRIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 405 ~~~~~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
+++|++|||||++|++|+.+|++++.+++|
T Consensus 397 v~~~~iVpGGGa~E~~ls~~L~~~~~~~~g 426 (529)
T 3iyg_A 397 LESKSVVPGGGAVEAALSIYLENYATSMGS 426 (529)
T ss_pred hhCCeEEeCCcHHHHHHHHHHHHHhhhcCC
Confidence 999999999999999999999999988876
No 5
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Probab=100.00 E-value=4e-93 Score=739.76 Aligned_cols=418 Identities=29% Similarity=0.535 Sum_probs=390.6
Q ss_pred ccccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHH
Q 013920 11 QSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGK 90 (434)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~ 90 (434)
..+|++++++.+| .+++..|+.||..|++++||||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++++
T Consensus 16 ~~~l~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~ 94 (553)
T 3ko1_A 16 VIILKEGSSRTYG-KEAVRANIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPAAKLLVQIAK 94 (553)
T ss_dssp ------------C-HHHHHHHHHHHHHHHHHHGGGCSTTCCEEEEECTTSCEEEECCHHHHHHSSCCCSHHHHHHHHHHH
T ss_pred EEEEecCcccchh-HHHHHHHHHHHHHHHHHHHhccCCcchhhHHHhhccceEEecCccchhhhhhccChhHHHHHHHhh
Confidence 4678999999999 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhCCCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhc
Q 013920 91 AQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVA 170 (434)
Q Consensus 91 ~~~~~~GDGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~ 170 (434)
+|++++||||||+++||++||+++.+++.+|+||..|++||+.|++.++++|++++++. +..+++.|.++++|+++
T Consensus 95 ~qd~e~GDGTTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v----~~~d~e~L~~vA~tsl~ 170 (553)
T 3ko1_A 95 GQDEETADGTKTAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQTIQELAQTV----SINDTDLLRKIAMTSLS 170 (553)
T ss_dssp TCSSSSSTTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCEEC----CTTCHHHHHHHHHHHHT
T ss_pred CCcccccCCceeEEEehHHHHHhHHHHHhcCCCceEEehhhhHHHHHHHHHHHHhcCCC----CCCcHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999873 55679999999999999
Q ss_pred ccc-cCchhhHHHHHHHHHHHhCCC--CCCCccccceEEEEcCCCCcccceeeeeEEEeecCC--CCcceeecceEEEEe
Q 013920 171 SKQ-FGQEEILCPLIADACIQVCPK--NPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFA 245 (434)
Q Consensus 171 sk~-~~~~~~ls~Lv~~ai~~v~~~--~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~--~~~~~~~n~kIlll~ 245 (434)
||+ ..++++|++|+++|+.+++++ +...||+++|+|++++|++..||++++|++|++++. .||+.++||||++++
T Consensus 171 sK~~~~~~~~i~~livdAv~~V~~~~~G~~~~dl~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~d 250 (553)
T 3ko1_A 171 SKAVAGAREYIADIVVKAVTQVAELRGDKWYVDLDNIQIVKKAGGSINDTQLVYGIVVDKEVVHPGMPKRLENAKIALID 250 (553)
T ss_dssp TSSCCTTHHHHHHHHHHHHHHHCCCTTSSCCCCGGGEEEEECCCSCGGGCEEESEEEECSCBSCTTSCSCCBSCEEEEEC
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhcCCceEEechhHHHHHHhCCccccceeeEEEEecccccCCCCccccccceEEEec
Confidence 995 567899999999999999875 223589999999999999999999999999999984 699999999999999
Q ss_pred eeccccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHH
Q 013920 246 GGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRR 325 (434)
Q Consensus 246 ~~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ 325 (434)
++|++++++.++++.+++++++.+++++|++++++++++|.+.|+||||++++|++.+++||.++||++++++++++|+|
T Consensus 251 ~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~vekI~~~g~~vvI~~~~I~~~al~~L~~~gI~~v~~v~k~~ler 330 (553)
T 3ko1_A 251 ASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGIDEVAQSYLAKKGVLAVRRAKKSDLEK 330 (553)
T ss_dssp SCBSCCCCTTTCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECSSCBCSHHHHHHHHHTCEEECCCCHHHHHH
T ss_pred CcccccCcccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEeccChHHHHHHHHHhcchhhhhhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeecccCCCCCCCCCcceeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhh
Q 013920 326 FCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMC 405 (434)
Q Consensus 326 ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~ 405 (434)
||++|||++++++++++++++|+|+.|++.++|+++|++|++|+. ++.|||+|||+|+.+++|.||+++||++++|+++
T Consensus 331 ia~~tGa~ivs~l~~l~~~~LG~a~~v~~~~ig~d~~~~i~g~~~-~~~~TI~lrG~te~~l~E~er~l~DAl~~~r~av 409 (553)
T 3ko1_A 331 LARATGGRVVSNIDEISEQDLGYASLIEERKVGEDKMVFVEGAKN-PKSISILIRGGLERLVDETERALRDALGTVADVI 409 (553)
T ss_dssp HHTTTTCCEESCGGGCCSSSSEECSEEECCCCSSSCCEEEESCSS-SSCEEEEECCSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCCeeecccccCChhhcchHHHHHHhhcCcceEEEeccCCC-CceEEEeeeccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999984 8999999999999999999999999999999999
Q ss_pred cCCeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013920 406 RDSRIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 406 ~~~~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
++|++|||||++|++|+.+|++++.+++|
T Consensus 410 ~~g~iVpGGGa~e~~~s~~L~~~~~~~~g 438 (553)
T 3ko1_A 410 KDGRAIAGGGAVEIEIAKKLRKYAPQVGG 438 (553)
T ss_dssp HHCEEEETTTHHHHHHHHHHHHHHHHHCS
T ss_pred hcCceecCCceeEeHHHHHHHHhccccCC
Confidence 99999999999999999999999887765
No 6
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=4.2e-92 Score=728.38 Aligned_cols=411 Identities=26% Similarity=0.468 Sum_probs=391.4
Q ss_pred cccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHHhhhhhhC
Q 013920 18 HKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIG 97 (434)
Q Consensus 18 ~~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~G 97 (434)
+++.+| .+++..||.||++|++++||||||+||+|||+++.|+++|||||+|||++|+++||+|||++++|++|++++|
T Consensus 2 ~~~~~g-~~~~~~ni~a~~~la~~vkttLGP~G~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~G 80 (515)
T 3iyg_G 2 TKRESG-RKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVG 80 (515)
T ss_pred Ccccch-HHHHHHHHHHHHHHHHHHhcCcCCCCCeEEEECCCCCeEEECCHHHHHHhcccCCHHHHHHHHHHHHhhhhhC
Confidence 456677 6999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhcccc-cCc
Q 013920 98 DGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQ-FGQ 176 (434)
Q Consensus 98 DGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~-~~~ 176 (434)
|||||+++||++||++|.+++.+|+||..|++||+.|.+.++++|+++++|. +..|++.|.++++|++++|. ..|
T Consensus 81 DGTTtvvvLAgeLL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v----~~~~~~~l~~va~tsl~sK~i~~~ 156 (515)
T 3iyg_G 81 DGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIPV----DTSNRDTMLNIINSSITTKVISRW 156 (515)
T ss_pred CChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccc----CCCCHHHHHHHHHHHhcCCchhhH
Confidence 9999999999999999999999999999999999999999999999998873 55678999999999999994 578
Q ss_pred hhhHHHHHHHHHHHhCCC--CCCCcccc-ceEEEEcCCCCcccceeeeeEEEeecCC--CCcceeecceEEEEeeecccc
Q 013920 177 EEILCPLIADACIQVCPK--NPANFNVD-NVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTS 251 (434)
Q Consensus 177 ~~~ls~Lv~~ai~~v~~~--~~~~~~~~-~I~i~~i~Gg~~~dS~~i~G~v~~~~~~--~~~~~~~n~kIlll~~~l~~~ 251 (434)
.+++++++++|+..+.++ +...+|++ +|+|++++||+++||++++|++|++++. .||+.++||||++++++|+++
T Consensus 157 ~~~~~~i~vdav~~V~~~~~~~~~~dl~~~I~I~ki~Ggs~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le~~ 236 (515)
T 3iyg_G 157 SSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYK 236 (515)
T ss_pred HHHHHHHHHHHHHhcccccCCCcccchhheeEEEEecCCCcccceEEeeEEEeCCCCCCCCcceeeeeEEEEEccccccc
Confidence 899999999999998743 22347775 5999999999999999999999999985 599999999999999999999
Q ss_pred ccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhC
Q 013920 252 ATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTG 331 (434)
Q Consensus 252 ~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia~~tG 331 (434)
+++.++++.+++++++.+++++|++++++++++|.+.|++|||++++|++.+++||.++||++++++++++|+|||++||
T Consensus 237 k~e~~~~v~is~~~~l~~~l~~E~~~l~~~v~kI~~~g~~vIi~~~~I~~~al~~L~~~~I~av~~~~k~~leria~~tG 316 (515)
T 3iyg_G 237 KGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACG 316 (515)
T ss_pred ccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECCccCHHHHHHHHHCCceeeccCCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeecccCCCCCCCCCcc-eeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcCCeE
Q 013920 332 AVAMLKLCQPNPDDLGY-VDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRI 410 (434)
Q Consensus 332 a~ii~~~~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~~~v 410 (434)
|++++++++++++++|+ |+.|++.++|+++|++|++|+. +++|||+|||+|+.+++|.||+++||++++|++++++++
T Consensus 317 a~ii~~l~~l~~~~LG~~a~~v~~~~~g~~~~~~i~g~~~-~~~~TIllrG~t~~~l~E~er~i~Dal~~~r~~~~~~~i 395 (515)
T 3iyg_G 317 ARIVSRPEELREEDVGTGAGLLEIKKIGDEYFTFITECKD-PKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQL 395 (515)
T ss_pred CeeeccccccChhhcCCcccEEEEEEECCceEEEEeCCCC-CCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHhhCCcE
Confidence 99999999999999999 9999999999999999999984 899999999999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHhhhcCCC
Q 013920 411 VPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 411 vpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
|||||++|++|+.+|++++++++|
T Consensus 396 vpGGGa~e~~~~~~L~~~~~~~~g 419 (515)
T 3iyg_G 396 VPGGGASEMAVAHALTEKSKAMTG 419 (515)
T ss_pred EeCCCHHHHHHHHHHHHHhhccCc
Confidence 999999999999999999988876
No 7
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=100.00 E-value=9.4e-93 Score=737.59 Aligned_cols=418 Identities=27% Similarity=0.477 Sum_probs=390.0
Q ss_pred ccccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHH
Q 013920 11 QSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGK 90 (434)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~ 90 (434)
..+++++++..+| ++++..|+.||.+|++++||||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++++
T Consensus 7 ~~~l~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGP~G~~kml~~~~g~~~iTnDG~tIlk~i~v~hP~Akll~e~a~ 85 (543)
T 1a6d_B 7 IFILKEGTKRESG-KDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSK 85 (543)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHTTSSTTCCCEEEECTTCCEEEECCHHHHHHHSCCCSHHHHHHHHHHT
T ss_pred hhhcCCcchhhhh-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHhhccchHHHHHHHHHH
Confidence 4578999988888 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhCCCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhc
Q 013920 91 AQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVA 170 (434)
Q Consensus 91 ~~~~~~GDGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~ 170 (434)
+|++++||||||+++||++||+++.+++.+|+||..|++||+.|++.++++|++++++. +..|++.|.++++|+++
T Consensus 86 ~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v----~~~~~~~l~~va~tsl~ 161 (543)
T 1a6d_B 86 TQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKI----GADEKALLLKMAQTSLN 161 (543)
T ss_dssp CTTCCCTTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEEC----CTTHHHHHHHHHHHHHT
T ss_pred hcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCCC----CCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999873 44568899999999999
Q ss_pred cccc-CchhhHHHHHHHHHHHhCCC--CCCCccccceEEEEcCCCCcccceeeeeEEEeecCC--CCcceeecceEEEEe
Q 013920 171 SKQF-GQEEILCPLIADACIQVCPK--NPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFA 245 (434)
Q Consensus 171 sk~~-~~~~~ls~Lv~~ai~~v~~~--~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~--~~~~~~~n~kIlll~ 245 (434)
||++ +|+++|++|+++|+..++++ +..++|+++|+|++++|++++||++++|++|++++. .||++++||||++++
T Consensus 162 sKi~~~~~~~i~~livdAv~~v~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~ 241 (543)
T 1a6d_B 162 SKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIALLD 241 (543)
T ss_dssp TSGGGGGHHHHHHHHHHHHHHHEEECSSSEEECGGGEEEEEEESSCGGGCEEESEEEESCCCSSTTSCSEEEEEEEEEES
T ss_pred cccccccHHHHHHHHHHHHHHhcccccCCcccccceEEEEEecCCCccceeEEccEEEecCCCCCCCcceecCCeEEEEe
Confidence 9965 68899999999999999865 223688999999999999999999999999999985 689999999999999
Q ss_pred eeccccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHH
Q 013920 246 GGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRR 325 (434)
Q Consensus 246 ~~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ 325 (434)
++|++++++.++++.++++++++.++++|++++++++++|.+.|+||||++++|++.+++||.++||++|+++++++|+|
T Consensus 242 ~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~k~~le~ 321 (543)
T 1a6d_B 242 APLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDK 321 (543)
T ss_dssp SCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHH
T ss_pred cccccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcCHHHHHHHHHCCeeEeccCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeecccCCCCCCCCCcceeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhh
Q 013920 326 FCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMC 405 (434)
Q Consensus 326 ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~ 405 (434)
||++|||++++++++++++++|+|+.|+++++|+++|++|++|+. ++.|||+|||+|+.+++|.||+++||++++|+++
T Consensus 322 ia~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~-~~~~TI~lrG~t~~~l~E~er~l~DAl~~~r~a~ 400 (543)
T 1a6d_B 322 LAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCKN-PKAVSILVRGETEHVVDEMERSITDSLHVVASAL 400 (543)
T ss_dssp HHHHHTCCEESCGGGCCGGGCEEEEEEEEEEETTEEEEEEEEESS-SSCEEEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCceecccccCCHHHCCCceEEEEEEecCceEEEEecCCC-CceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999984 8999999999999999999999999999999999
Q ss_pred cCCeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013920 406 RDSRIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 406 ~~~~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
++|++|||||++|++|+.+|++++.+++|
T Consensus 401 ~~~~ivpGGGa~e~~~s~~L~~~~~~~~g 429 (543)
T 1a6d_B 401 EDGAYAAGGGATAAEIAFRLRSYAQKIGG 429 (543)
T ss_dssp HHCEEEETTTHHHHHHHHHHHHHHHHTCS
T ss_pred HCCCccCCccHHHHHHHHHHHHHhhhcCC
Confidence 99999999999999999999999987765
No 8
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=7.4e-92 Score=725.91 Aligned_cols=410 Identities=25% Similarity=0.415 Sum_probs=392.1
Q ss_pred ccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHHhhhh
Q 013920 15 KEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQE 94 (434)
Q Consensus 15 ~~~~~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~ 94 (434)
++|+++++| ++++..||.||++|++++||||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|++
T Consensus 1 ~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~ 79 (515)
T 3iyg_H 1 KEGTDSSQG-IPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDA 79 (515)
T ss_pred CCCccccCc-HHHHHHHHHHHHHHHHHHhhCcCCCCCeEEEECCCCCeEEECCHHHHHHHccCCCHHHHHHHHHHHHhhc
Confidence 578888899 6999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCC----HHHHHHHHHHhhc
Q 013920 95 EIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRN----TEEVIYRMKAAVA 170 (434)
Q Consensus 95 ~~GDGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~----~~~l~~i~~t~l~ 170 (434)
++||||||+++||++||++|.+++.+|+||..|++||+.|++.++++|+++++|. +..+ ++.|.++++|+++
T Consensus 80 ~~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v----~~~~~~~~~~~L~~va~tsl~ 155 (515)
T 3iyg_H 80 EVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTV----KKEDKVEQRKLLEKCAMTALS 155 (515)
T ss_pred eeCcchhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccc----ccCChHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999998874 3234 6788999999999
Q ss_pred ccc-cCchhhHHHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccceeeeeEEEeecCC-----CCcceeecceEEEE
Q 013920 171 SKQ-FGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV-----GSIKNMEKAKVAVF 244 (434)
Q Consensus 171 sk~-~~~~~~ls~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~-----~~~~~~~n~kIlll 244 (434)
||+ +.++++|++|+++|+.+++. ++|+++|+|++++||+..||++++|++|++++. +||+.++||||+++
T Consensus 156 sK~~s~~~~~i~~livdAv~~V~~----~~d~~~I~V~k~~Gg~~~ds~lv~G~~~dk~~~~p~~~~~p~~~en~kIll~ 231 (515)
T 3iyg_H 156 SKLISQQKAFFAKMVVDAVMMLDD----LLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALL 231 (515)
T ss_pred CCcccccHHHHHHHHHHHHHHhcc----cCCcceEEEEecCCCCccceEEEeeeEEecCccCcccccCCccccccEEEEE
Confidence 995 57899999999999999963 588889999999999999999999999999874 35889999999999
Q ss_pred eeeccccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHH
Q 013920 245 AGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELR 324 (434)
Q Consensus 245 ~~~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~ 324 (434)
+++|++++++.++++.+++++++.+++++|++++++++++|.+.|+||||++++|++.+++||+++||++++++++++|+
T Consensus 232 ~~~Le~~k~e~~~~v~is~~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~dla~~~l~~~gI~~v~~~~k~~le 311 (515)
T 3iyg_H 232 NVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLK 311 (515)
T ss_pred cccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCcccHHHHHHHHHcCCcccccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeecccCCCCCCCCCcceeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHh
Q 013920 325 RFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAM 404 (434)
Q Consensus 325 ~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~ 404 (434)
|||++|||++++++++++++++|+|+.|++.++|+++|++|++|+. +++|||+|||+|+.+++|.||+++||++++|++
T Consensus 312 ria~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~g~~~-~~~~tI~lrG~t~~~l~E~kr~i~DAl~~~r~~ 390 (515)
T 3iyg_H 312 RTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFFTGCPK-AKTCTIILRGGAEQFMEETERSLHDAIMIVRRA 390 (515)
T ss_pred HHHHHhCCEEeeccccCCHHHCCcccEEEEEEEcCeEEEEEecCCC-CceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999984 899999999999999999999999999999999
Q ss_pred hcCCeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013920 405 CRDSRIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 405 ~~~~~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
++++++|||||++|++++.+|++++++++|
T Consensus 391 v~~~~iVpGGGa~e~~~s~~L~~~~~~~~g 420 (515)
T 3iyg_H 391 IKNDSVVAGGGAIEMELSKYLRDYSRTIPG 420 (515)
T ss_pred hhCCCeecCCcHHHHHHHHHHHHHHhcCCh
Confidence 999999999999999999999999988775
No 9
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=100.00 E-value=3.6e-92 Score=732.85 Aligned_cols=416 Identities=27% Similarity=0.507 Sum_probs=391.8
Q ss_pred ccccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHH
Q 013920 11 QSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGK 90 (434)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~ 90 (434)
..+++++++..+| ++++..|+.||.+|++++||||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++++
T Consensus 8 ~~~l~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGP~G~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~ 86 (545)
T 1a6d_A 8 ILVLKEGTQREQG-KNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEVSK 86 (545)
T ss_dssp ---------CEEH-HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECSSSCEEEECCHHHHHHHSCCCSHHHHHHHGGGG
T ss_pred ccccCCcchhhch-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCcHHHHHHhhhccchHHHHHHHHHH
Confidence 4578999888888 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhCCCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhc
Q 013920 91 AQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVA 170 (434)
Q Consensus 91 ~~~~~~GDGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~ 170 (434)
+|++++||||||+++||++||+++.+++++|+||..|++||+.|++.++++|+++++| + .+++.|.++++|+++
T Consensus 87 ~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~-----~-~~~~~l~~va~tsl~ 160 (545)
T 1a6d_A 87 AQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEK-----S-TDDATLRKIALTALS 160 (545)
T ss_dssp CTTTCSTTHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCEE-----C-CCHHHHHHHHHHHTT
T ss_pred hcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCC-----C-CCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999876 2 468999999999999
Q ss_pred cccc-CchhhHHHHHHHHHHHhCCCC--CCCccccceEEEEcCCCCcccceeeeeEEEeecCC--CCcceeecceEEEEe
Q 013920 171 SKQF-GQEEILCPLIADACIQVCPKN--PANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFA 245 (434)
Q Consensus 171 sk~~-~~~~~ls~Lv~~ai~~v~~~~--~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~--~~~~~~~n~kIlll~ 245 (434)
||++ +|+++|++|+++|+.++++++ ..+||+++|+|++++|++++||++++|++|++++. .||++++||||++++
T Consensus 161 sKi~~~~~~~i~~livdAv~~v~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~ 240 (545)
T 1a6d_A 161 GKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIALID 240 (545)
T ss_dssp TSSCCSTHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEECCCSCSTTCEEESEEEESCCCSCTTSCSEEEEEEEEEEC
T ss_pred cccccccHHHHHHHHHHHHHHHhcccCCCcccccceEEEEEecCCCceeeEEEeeEEEeccCCCCCCcceecCCEEEEEe
Confidence 9965 688999999999999998652 24688899999999999999999999999999985 689999999999999
Q ss_pred eeccccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHH
Q 013920 246 GGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRR 325 (434)
Q Consensus 246 ~~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ 325 (434)
++|++++++.++++.++++++++.++++|++++++++++|.+.|+||||++++|++.+++||.++||++|+++++++|+|
T Consensus 241 ~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~le~ 320 (545)
T 1a6d_A 241 SALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEK 320 (545)
T ss_dssp SCBSCCCCSSCCEEEECSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHHTCEEECSCCHHHHHH
T ss_pred cCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHCCeeEeccCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeecccCCCCCCCCCcceeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhh
Q 013920 326 FCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMC 405 (434)
Q Consensus 326 ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~ 405 (434)
||++|||++++++++++++++|+|+.|++.++|+++|++|++|+. ++.|||+|||+|+.+++|.||+++||++++|+++
T Consensus 321 ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~-~~~~TI~lrG~te~~l~E~kr~l~DAl~~~r~a~ 399 (545)
T 1a6d_A 321 LAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKN-PKAVSILIRGGTDHVVSEVERALNDAIRVVAITK 399 (545)
T ss_dssp HHHHHCCCEESSGGGCCGGGCEEEEEEEEEEETTEEEEEEEEESC-SSCEEEEECCSSSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCeeecccccCCHHHCCCceEEEEEEecCceEEEEecCCC-CceEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999984 8999999999999999999999999999999999
Q ss_pred cCCeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013920 406 RDSRIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 406 ~~~~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
++|++|||||++|++|+.+|++++++++|
T Consensus 400 ~~g~iVpGGGa~e~~~~~~L~~~~~~~~g 428 (545)
T 1a6d_A 400 EDGKFLWGGGAVEAELAMRLAKYANSVGG 428 (545)
T ss_dssp HHCEEEETTTHHHHHHHHHHHHHHHTSCH
T ss_pred hCCCEEeCcCHHHHHHHHHHHHHhhccCc
Confidence 99999999999999999999999977654
No 10
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=2.3e-91 Score=723.04 Aligned_cols=416 Identities=50% Similarity=0.856 Sum_probs=397.6
Q ss_pred cccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHHhhhhh
Q 013920 16 EGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEE 95 (434)
Q Consensus 16 ~~~~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~ 95 (434)
+|+++++|.++++..||.||+.|++++||||||+||+|||+++.|+++|||||+|||++|+++||+|+|+++++++|+++
T Consensus 1 ~~~~~~~g~~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~~ 80 (512)
T 3iyg_Q 1 EGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQE 80 (512)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCCHHHHHHHHHHHHhhhh
Confidence 57889999779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhcccccC
Q 013920 96 IGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFG 175 (434)
Q Consensus 96 ~GDGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~ 175 (434)
+||||||+++||++||+++.+++.+|+||..|++||+.|++.++++|+++++... .+..+++.|.++++|+++||+.+
T Consensus 81 ~GDGTTtvvVLA~~Ll~~a~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~~~~~~--~~~~~~~~l~~va~tsl~sK~~~ 158 (512)
T 3iyg_Q 81 VGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCCSA--KNLRDVDEVSSLLHTSVMSKQYG 158 (512)
T ss_pred hCCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhcccC--CCCCCHHHHHHHHHHHhCCCCcc
Confidence 9999999999999999999999999999999999999999999999999865311 24568899999999999999777
Q ss_pred chhhHHHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccceeeeeEEEeecCCCCcceeecceEEEEeeecccccccc
Q 013920 176 QEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATET 255 (434)
Q Consensus 176 ~~~~ls~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~~~~~~~~n~kIlll~~~l~~~~~~~ 255 (434)
++++|++|+++|+.++++++ ..+|+++|+|.+.+|+++.||++++|++|++++.+||++++||||+++++||++.+++.
T Consensus 159 ~~~~i~~livdAv~~V~~~~-~~i~v~~I~i~k~~Ggs~~ds~lv~G~~~dk~~~~~~~~~~n~kI~ll~~~le~~~~e~ 237 (512)
T 3iyg_Q 159 NEVFLAKLIAQACVSIFPDS-GHFNVDNIRVCKILGSGVHSSSVLHGMVFKKETEGDVTSVKDAKIAVYSCPFDGMITET 237 (512)
T ss_pred chHHHHHHHHHHHHHHhccC-CcccHhHeeEeeccCCCcccceEEeeEEEecCcCCCCcccccCceEEEecccccccccc
Confidence 88999999999999998753 26889999999999999999999999999999988999999999999999999999999
Q ss_pred ceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCeec
Q 013920 256 KGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAM 335 (434)
Q Consensus 256 ~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii 335 (434)
++++.+++++++.++.++|++++++++++|.+.|+|||+++++|++.+++||+++||++++++++.+|+|||++|||+++
T Consensus 238 k~~v~Is~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~I~~la~~~l~k~~I~av~~~~~~dle~ia~~tGa~ii 317 (512)
T 3iyg_Q 238 KGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKYNIMLVRLNSKWDLRRLCKTVGATAL 317 (512)
T ss_pred cceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCcceeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcCCeEEeCCC
Q 013920 336 LKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAA 415 (434)
Q Consensus 336 ~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGgG 415 (434)
+++++++++++|+|+.|++.++|++++++|++|+.++++|||+|||+|+.+++|.||+++||++++|+++++|++|||||
T Consensus 318 s~l~~~~~~~LG~a~~v~~~~~g~~~~~~~~~~~~~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~a~~~~~iVpGGG 397 (512)
T 3iyg_Q 318 PRLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGG 397 (512)
T ss_pred cccccCCHHHCCcccEEEEEEeCCeEEEEEEcccCCCceEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhCCCEecCCc
Confidence 99999999999999999999999999999999974478999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCC
Q 013920 416 ATEIELARRLKEFSFKETG 434 (434)
Q Consensus 416 ~~E~~l~~~L~~~a~~~~g 434 (434)
++|++|+.+|++++.+++|
T Consensus 398 a~e~~~s~~L~~~~~~~~g 416 (512)
T 3iyg_Q 398 ATEIELAKQITSYGETCPG 416 (512)
T ss_pred HHHHHHHHHHHHHhccCCc
Confidence 9999999999999988775
No 11
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Probab=100.00 E-value=5.9e-91 Score=719.52 Aligned_cols=410 Identities=24% Similarity=0.392 Sum_probs=390.3
Q ss_pred ccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCC--CCEEEecCHHHHHhhccccChHHHHHHHHHHhhhh
Q 013920 17 GHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHL--DKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQE 94 (434)
Q Consensus 17 ~~~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~--g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~ 94 (434)
++++.+| ++++..|+.||..|++++||||||+||+|||+++. |+++|||||+|||++|+++||+|+|+++++++|++
T Consensus 2 ~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~~~G~~~iTnDG~tIlk~i~v~hp~Akll~e~a~~qd~ 80 (513)
T 3iyg_B 2 GADEERA-ETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDD 80 (513)
T ss_pred Ccchhhh-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEeecCCCCCCeEEECCHHHHHHHccccCHHHHHHHHHHHHhhh
Confidence 4556677 69999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred hhCCCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCC-CCHHHHHHHHHHhhcccc
Q 013920 95 EIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDV-RNTEEVIYRMKAAVASKQ 173 (434)
Q Consensus 95 ~~GDGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~-~~~~~l~~i~~t~l~sk~ 173 (434)
++||||||+++||++||+++.+++.+|+||..|++||+.|.+.++++|+++++|... +. .+++.|.++++|+++||+
T Consensus 81 e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~--~~~~~~~~l~~va~tslssK~ 158 (513)
T 3iyg_B 81 EVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAVDHGS--DEVKFRQDLMNIAGTTLSSKL 158 (513)
T ss_pred hhCCChhhhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCccc--ccccCHHHHHHHHHhhhcccc
Confidence 999999999999999999999999999999999999999999999999999987421 11 267899999999999995
Q ss_pred -cCchhhHHHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccceeeeeEEEeecCC-CCcceeecceEEEEeeecccc
Q 013920 174 -FGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV-GSIKNMEKAKVAVFAGGVDTS 251 (434)
Q Consensus 174 -~~~~~~ls~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~-~~~~~~~n~kIlll~~~l~~~ 251 (434)
.+++++|++|+++|+.+++++ +|+++|+|++++||+..||++++|++|++++. .||+.++||||++++++|+++
T Consensus 159 ~~~~~~~i~~livdAv~~V~~~----~d~~~I~V~ki~gg~~~ds~lv~G~v~dk~~~~~m~~~~en~kIll~~~~Le~~ 234 (513)
T 3iyg_B 159 LTHHKDHFTKLAVEAVLRLKGS----GNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTD 234 (513)
T ss_pred cccchHHHHHHHHHHHHHhccc----CCcCeEEEEEeCCCCccceeEEeeEEEeccccCCCceeecCceEEEEcCCcccc
Confidence 468899999999999999753 78889999999999999999999999999884 599999999999999999999
Q ss_pred ccc-cceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHh
Q 013920 252 ATE-TKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTT 330 (434)
Q Consensus 252 ~~~-~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia~~t 330 (434)
+++ .++++.+++++++.++.++|++++++++++|.+.|+||||++++|++.+++||.++||++++++++.+|+|||++|
T Consensus 235 k~e~~~~~v~iss~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~~~al~~L~~~~I~av~~~~~~~le~ia~~t 314 (513)
T 3iyg_B 235 KIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFVGVERLALVT 314 (513)
T ss_pred cccccCCceEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCccHHHHHHHHHcCceEEecCCHHHHHHHHHHh
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeecccCCCCCCCCCcceeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcCCeE
Q 013920 331 GAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRI 410 (434)
Q Consensus 331 Ga~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~~~v 410 (434)
||++++++++++++++|+|+.|+++.+|+++|++|++|+. +++|||+|||+|+.+++|.||+++||++++|++++++++
T Consensus 315 Ga~ii~~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~-~~~~tI~lrG~t~~~l~E~kr~l~DAl~~~r~av~~~~i 393 (513)
T 3iyg_B 315 GGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVAL-GEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRT 393 (513)
T ss_pred CCEEecccccCCHhHCCcccEEEEEEECCeEEEEEecCCC-CceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcE
Confidence 9999999999999999999999999999999999999984 889999999999999999999999999999999999899
Q ss_pred EeCCCHHHHHHHHHHHHhhhcCCC
Q 013920 411 VPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 411 vpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
|||||++|++|+.+|++++.+++|
T Consensus 394 VpGGGa~e~~~~~~L~~~~~~~~g 417 (513)
T 3iyg_B 394 VYGGGCSEMLMAHAVTQLASRTPG 417 (513)
T ss_pred EeCCcHHHHHHHHHHHHHhhccCc
Confidence 999999999999999999988775
No 12
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=1.2e-90 Score=718.09 Aligned_cols=411 Identities=28% Similarity=0.500 Sum_probs=391.7
Q ss_pred ccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHHhhhhhhCC
Q 013920 19 KHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGD 98 (434)
Q Consensus 19 ~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GD 98 (434)
++.+| ++++..||.||..|++++||||||+||+|||+++.|+++|||||+|||++|+++||+|+|+++++++|++++||
T Consensus 5 ~~~~g-~~~~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~akll~~~a~~qd~~~GD 83 (518)
T 3iyg_D 5 DRDKP-AQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGD 83 (518)
T ss_pred cchhh-HHHHHHHHHHHHHHHHHHHhccCCCCCceeeeCCCCCeEEECCHHHHHHHcccchHHHHHHHHHHHHhhhhhCC
Confidence 44566 69999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhcccc-cCch
Q 013920 99 GANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQ-FGQE 177 (434)
Q Consensus 99 Gtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~-~~~~ 177 (434)
||||+++||++||+++.+++.+|+||..|++||+.|.+.++++|++++.|. +..+++.|.++++|+++||+ +.|.
T Consensus 84 GTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v----~~~~~~~l~~vA~tsl~sK~~~~~~ 159 (518)
T 3iyg_D 84 GTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPV----ELSDRETLLNSAATSLNSKVVSQYS 159 (518)
T ss_pred CceeHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHheeeC----CCCChHHHHHHhHhhhccccchhhH
Confidence 999999999999999999999999999999999999999999999998873 55578999999999999995 5789
Q ss_pred hhHHHHHHHHHHHhCCC-CCCCccccceEEEEcCCCCcccceeeeeEEEeecCC-CCcceeecceEEEEeeecccccccc
Q 013920 178 EILCPLIADACIQVCPK-NPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV-GSIKNMEKAKVAVFAGGVDTSATET 255 (434)
Q Consensus 178 ~~ls~Lv~~ai~~v~~~-~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~-~~~~~~~n~kIlll~~~l~~~~~~~ 255 (434)
++|++|+++|+.++++. +...+|+++|+|++++||+..||++++|++|++++. +||+.++||||++++|+|++++++.
T Consensus 160 ~~i~~livdAv~~V~~~~~~~~~d~~~I~V~k~~Gg~~~ds~lv~G~~~dk~~~~~mp~~i~n~kIlll~~~Le~~k~~~ 239 (518)
T 3iyg_D 160 SLLSPMSVDAVMKVIDPATATSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKVANSGITRVEKAKIGLIQFCLSAPKTDM 239 (518)
T ss_pred HHHHHHHHHHHHHhhccccCCCcccceEEEEEcCCCChhhheEeccEEEecccccCCCccccCceEEEEEeecccccccc
Confidence 99999999999999752 223689999999999999999999999999999987 7999999999999999999999999
Q ss_pred ceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEe-----CCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHh
Q 013920 256 KGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVS-----GAAVGEMALHFCERYKLMVLKISSKFELRRFCRTT 330 (434)
Q Consensus 256 ~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~-----~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia~~t 330 (434)
+.++.++++++++.+.++|++++++++++|.+.|+||||+ +++|++.+++||.++||++++++++.+|+|||++|
T Consensus 240 ~~~i~is~~~~~~~~~~~E~~~l~~~le~I~~~g~~lvi~~k~i~~~~I~~~Al~~L~~~~I~av~~~~~~~le~ia~~t 319 (518)
T 3iyg_D 240 DNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDIEREDIEFICKTI 319 (518)
T ss_pred CceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccccccCcCHHHHHHHHHcCcEEEecCCHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999 89999999999999999999999999999999999
Q ss_pred CCeecccCCCCCCCCCcceeeEEEEEEcc-eEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcCCe
Q 013920 331 GAVAMLKLCQPNPDDLGYVDSVSVEEIGG-ARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSR 409 (434)
Q Consensus 331 Ga~ii~~~~~l~~~~lG~~~~v~~~~ig~-~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~~~ 409 (434)
||++++++++++++++|+|+.|++.++|+ ++|++|++|+..+++|||+|||+|+.+++|.||+++||++++|+++++|+
T Consensus 320 Ga~ii~~l~~l~~~~LG~a~~v~~~~~g~~~~~~~~~g~~~~~~~~tI~lrG~te~~l~E~kr~l~DAl~~~r~av~~~~ 399 (518)
T 3iyg_D 320 GTKPVAHVDQFTADMLGSAELAEEVSLNGSGKLIKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRA 399 (518)
T ss_pred CCEEecccccCCHHHCCcCcEEEEEEeCCCceEEEEECCCCCCceEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999 89999999974478999999999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHhhhcCCC
Q 013920 410 IVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 410 vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
+|||||++|++|+.+|++++.+++|
T Consensus 400 iVpGGGa~e~~~~~~L~~~~~~~~g 424 (518)
T 3iyg_D 400 LIAGGGAPEIELALRLTEYSRTLSG 424 (518)
T ss_pred EeecCcHHHHHHHHHHHHHhhcCCh
Confidence 9999999999999999999988765
No 13
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=2e-90 Score=716.55 Aligned_cols=412 Identities=27% Similarity=0.441 Sum_probs=391.7
Q ss_pred ccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHHhhhhhhCC
Q 013920 19 KHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGD 98 (434)
Q Consensus 19 ~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GD 98 (434)
++.+| ++++..|+.||..|++++||||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|++++||
T Consensus 4 ~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~g~~~iTnDG~tIlk~i~~~hP~Akll~~~a~~qd~~~GD 82 (515)
T 3iyg_E 4 SRLMG-LEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGD 82 (515)
T ss_pred hhhch-HHHHHHHHHHHHHHHHHHhhccCCCCCeEEEEcCCCCeEEeCcHHHHHHHcccCCHHHHHHHHHHHHhhhhhCC
Confidence 45567 69999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhcccc-cCch
Q 013920 99 GANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQ-FGQE 177 (434)
Q Consensus 99 Gtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~-~~~~ 177 (434)
||||+++||++||+++.+++.+|+||..|++||+.|.+.++++|++++.+.. .+..|++.|.++++|++++|+ ..+.
T Consensus 83 GTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~--~~~~~~~~l~~vA~tsl~sK~i~~~~ 160 (515)
T 3iyg_E 83 GTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVL--VDMKNTEPLIQTAKTTLGSKVVNSCH 160 (515)
T ss_pred chhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhceecC--CCccCHHHHHHHHHHHhcccchhHHH
Confidence 9999999999999999999999999999999999999999999999998742 133467899999999999995 4679
Q ss_pred hhHHHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccceeeeeEEEeecCC--CCcceeecceEEEEeeecccccccc
Q 013920 178 EILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTSATET 255 (434)
Q Consensus 178 ~~ls~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~--~~~~~~~n~kIlll~~~l~~~~~~~ 255 (434)
++|++++++|+..+.+.....+|+++|+|++++||++.||++++|++|++++. .||+.++||||++++|||++.+++.
T Consensus 161 ~~l~~l~~dav~~V~~~~~~~~d~~~I~I~k~~Ggs~~ds~lv~G~~~dk~~~~~~m~~~~~~~kIall~~~le~~k~~~ 240 (515)
T 3iyg_E 161 RQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKT 240 (515)
T ss_pred HHHHHHHHHHHHhhcccccCCCCcccEEEEEecCCCcccceEEeeEEEecccccccccccCCCceEEEEcCccccccccc
Confidence 99999999999999764444688999999999999999999999999999985 6899999999999999999999999
Q ss_pred ceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCeec
Q 013920 256 KGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAM 335 (434)
Q Consensus 256 ~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii 335 (434)
++++.+++++++..+.++|++++++++++|.+.|+||||++++|++.+++||.++||++++++++.+|+|||++|||+++
T Consensus 241 ~~~~~is~~~~l~~~~~~E~~~l~~~lekI~~~g~~vvi~~~~I~~~al~~L~~~~I~~v~~v~k~~le~ia~~tGa~ii 320 (515)
T 3iyg_E 241 KHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQNDLPAVRWVGGPEIELIAIATGGRIV 320 (515)
T ss_pred cceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHCCCEEEeccCHHHHHHHHHHhCCEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCcceeeEEEEEEcc--eEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcCCeEEeC
Q 013920 336 LKLCQPNPDDLGYVDSVSVEEIGG--ARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPG 413 (434)
Q Consensus 336 ~~~~~l~~~~lG~~~~v~~~~ig~--~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpG 413 (434)
+++++++++++|+|+.|+++++|+ ++|++|++|+. ++.|||+|||+|+.+++|.||+++||++++|+++++|++|||
T Consensus 321 ~~l~~l~~~~LG~a~~v~~~~ig~~k~~~~~~~g~~~-~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~a~~~~~iVpG 399 (515)
T 3iyg_E 321 PRFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQCKN-SRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYG 399 (515)
T ss_pred cccccCCHHHCCcceEEEEEEeccccceEEEEEcCCC-CceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHhcCCcCCC
Confidence 999999999999999999999997 79999999984 899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhhcCCC
Q 013920 414 AAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 414 gG~~E~~l~~~L~~~a~~~~g 434 (434)
||++|++|+.+|++++.+++|
T Consensus 400 GGa~e~~~~~~L~~~~~~~~g 420 (515)
T 3iyg_E 400 GGAAEISCALAVSQEADKCPT 420 (515)
T ss_pred CcHHHHHHHHHHHHHhccCCc
Confidence 999999999999999988765
No 14
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g*
Probab=100.00 E-value=2.6e-92 Score=733.94 Aligned_cols=424 Identities=24% Similarity=0.416 Sum_probs=391.2
Q ss_pred CCCCCCCcccccccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccCh
Q 013920 1 MGFSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP 80 (434)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP 80 (434)
|.+.+ +++...+|++++++.+| ++++..||.||.+|++++||||||+||+|||+++.|+++|||||+|||++|+++||
T Consensus 1 ~~~~~-~~~~~~~l~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hP 78 (550)
T 3p9d_G 1 MNFGS-QTPTIVVLKEGTDASQG-KGQIISNINACVAVQEALKPTLGPLGSDILIVTSNQKTTISNDGATILKLLDVVHP 78 (550)
T ss_dssp ----------------CCCEEES-HHHHHHHHHHHHHHHTTTGGGSTTTCCCEEEECSSSCEEEECCHHHHTTTSCCCSH
T ss_pred CCccc-CCcchhhhcCCcchhhh-HHHHHHHHHHHHHHHHHHHhccCCCCCcEEEECCCCCeEEECCHHHHHHHccCCCH
Confidence 44444 33557889999999999 79999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhCCCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCC---
Q 013920 81 AAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRN--- 157 (434)
Q Consensus 81 ~a~ll~~~~~~~~~~~GDGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~--- 157 (434)
+|+|++++|++|++++||||||+++||++||+++.+++.+|+||..|++||+.|++.++++|++++++. +..|
T Consensus 79 ~Akll~e~a~~qd~e~GDGTTtvvVLA~~Ll~~a~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v----~~~~~~~ 154 (550)
T 3p9d_G 79 AAKTLVDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKINELAVDI----TSEKSSG 154 (550)
T ss_dssp HHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHTTSHHHHSSSCTTHHHHHHHHHHHHHHHHHHHSEECC----CCC----
T ss_pred HHHHHHHHHHHhhhhhCCCceehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccC----CCCcchh
Confidence 999999999999999999999999999999999999999999999999999999999999999998873 3334
Q ss_pred HHHHHHHHHHhhcccc-cCchhhHHHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccceeeeeEEEeecCC-----C
Q 013920 158 TEEVIYRMKAAVASKQ-FGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV-----G 231 (434)
Q Consensus 158 ~~~l~~i~~t~l~sk~-~~~~~~ls~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~-----~ 231 (434)
++.|.++++|+++||+ +.++++|++|+++|+.+++++ ++|+++|+|++++|++++||++++|++|++++. +
T Consensus 155 ~~~L~~vA~tsl~sK~~~~~~~~i~~livdAv~~V~~~---~~dl~~I~Vikv~Gg~~~ds~lv~G~~~dk~~~s~yf~~ 231 (550)
T 3p9d_G 155 RELLERCARTAMSSKLIHNNADFFVKMCVDAVLSLDRN---DLDDKLIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQ 231 (550)
T ss_dssp --CHHHHHHHHHHHTTTGGGHHHHHHHHHHHHHHCCSS---SCCGGGCCCCBCCSSCGGGCCCCSSEEECCCSSCTTCSC
T ss_pred HHHHHHHHHHhccCccccccHhHHHHHHHHHHHHhCcc---ccCchheeEEEecCCCccceeEEeeEEEecccccccccc
Confidence 7789999999999995 578999999999999999752 589999999999999999999999999999873 6
Q ss_pred CcceeecceEEEEeeeccccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCC
Q 013920 232 SIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYK 311 (434)
Q Consensus 232 ~~~~~~n~kIlll~~~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~ 311 (434)
||+.++||||++++++|++++++.++++.+++++++.+++++|++++++++++|.+.|++||+++++|++.+++||+++|
T Consensus 232 ~~~~~en~kIll~~~~Le~~k~e~~~~v~is~~~~l~~il~~E~~~l~~~v~~I~~~g~~vVi~~~~I~dla~~~L~~~g 311 (550)
T 3p9d_G 232 QPKKFNNPKILSLNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGDLATQFFADRN 311 (550)
T ss_dssp SCSCCSSCCEEEECSCCSCCCCSSCEEEEECSSSHHHHHHHHHHHHHHHHHHHHHTTTCSEEEESSCCCHHHHHTTGGGT
T ss_pred CcccccCceEEEeccccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCccHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcceeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHH
Q 013920 312 LMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLE 391 (434)
Q Consensus 312 I~~v~~v~~~~L~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~ 391 (434)
|++++++++++|+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|+. +++|||+|||+|+.+++|.|
T Consensus 312 I~~v~~v~k~~lerIa~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~e~~~~~~g~~~-~~~~tI~lrG~te~~l~E~k 390 (550)
T 3p9d_G 312 IFCAGRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQIGSERYNLFQGCPQ-AKTCTLLLRGGAEQVIAEVE 390 (550)
T ss_dssp CEEEECCCTTHHHHHHHHTCCCCBSSGGGCCGGGCCCCSBCCCCCCSSSCCEEEBCCTT-CCCCCCCBCSSSHHHHHHHH
T ss_pred CccccCcCHHHHHHHHHHhCCceecchhhCCHHHcCCceEEEEEEeCCeEEEEEecCCC-CceeEEEEeCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999984 89999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013920 392 RAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 392 ~~i~dal~~~~~~~~~~~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
|+++||++++|+++++|++|||||++|++|+.+|++++++++|
T Consensus 391 r~l~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g 433 (550)
T 3p9d_G 391 RSLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLRDYSKTIAG 433 (550)
T ss_dssp HHHHHHHHHHHHHHHSCCEEETTTHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHhHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhhcCCh
Confidence 9999999999999999999999999999999999999988775
No 15
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*
Probab=100.00 E-value=3.5e-91 Score=726.70 Aligned_cols=423 Identities=28% Similarity=0.442 Sum_probs=397.2
Q ss_pred CCCcccccccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHH
Q 013920 5 MQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKL 84 (434)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~l 84 (434)
+|+.+... |+++.+..+| ++++..|+.||..|++++||||||+||+|||+++.|+++|||||+|||++|+++||+|+|
T Consensus 5 ~~~~~~~~-~~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akl 82 (559)
T 3p9d_A 5 FNNSRSDT-LFLGGEKISG-DDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPAGKI 82 (559)
T ss_dssp ---CCCCS-CCSSCEEEET-HHHHHHHHHHHHHHHHHTTTTSSTTCCEEEECCSSSCCCEECCHHHHHHHHCCCSHHHHH
T ss_pred ccCCccch-hhccccccch-HHHHHHHHHHHHHHHHHHHhccCCCCCeeEeEcCCCCEEEECCHHHHHHHhcCCCHHHHH
Confidence 45544434 6888888889 799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhCCCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHh-hhhcccCCCCCCCHHHHHH
Q 013920 85 LVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEE-LVEEGSENMDVRNTEEVIY 163 (434)
Q Consensus 85 l~~~~~~~~~~~GDGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~ 163 (434)
++++|++|++++||||||+++||++||+++.+++.+|+||..|++||+.|++.++++|++ ++.+. +..+++.|.+
T Consensus 83 l~e~a~~qd~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~s~~v----~~~~~e~L~~ 158 (559)
T 3p9d_A 83 LVELAQQQDREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSV----DTLGKETLIN 158 (559)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHTGGGS----CC--CTTHHH
T ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC----CCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999 88873 4345788999
Q ss_pred HHHHhhcccc-cCchhhHHHHHHHHHHHhCC-C--CCCCccccceEEEEcCCCCcccceeeeeEEEeecCC--CCcceee
Q 013920 164 RMKAAVASKQ-FGQEEILCPLIADACIQVCP-K--NPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNME 237 (434)
Q Consensus 164 i~~t~l~sk~-~~~~~~ls~Lv~~ai~~v~~-~--~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~--~~~~~~~ 237 (434)
+++|+++||+ .+|+++|++|+++|+.++++ + +...+|+++|+|++++|++++||++++|++|++++. .||+.++
T Consensus 159 vA~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~~~~~~i~l~~I~I~k~~Ggs~~ds~lv~G~v~dk~~~~~~m~~~ie 238 (559)
T 3p9d_A 159 IAKTSMSSKIIGADSDFFSNMVVDALLAVKTQNSKGEIKYPVKAVNVLKAHGKSATESLLVPGYALNCTVASQAMPKRIA 238 (559)
T ss_dssp HHHHTTSSSGGGTTHHHHHHHHHHHHHHHCCEESSSCEECCTTCCCEEEEESSCSSCCBCCSEECCCCCCSSTTSCSEEC
T ss_pred HHHHHhccCcccchhHHHHHHHHHHHHHhcccccCCCCccchhHeEEEEecCCCccceeEeccEEEeecccCCCcceeec
Confidence 9999999995 57899999999999999985 2 123689999999999999999999999999999874 5999999
Q ss_pred --cceEEEEeeeccccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEE
Q 013920 238 --KAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVL 315 (434)
Q Consensus 238 --n~kIlll~~~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v 315 (434)
||||++++++|++++++.++++.+++++++..+.++|++++++++++|.+.|+||||++++|++.+++||.++||++|
T Consensus 239 ~~n~kIll~~~~Le~~k~e~~~~v~is~~~~l~~i~~~E~~~l~~~le~I~~~g~~lvI~~~~I~~~al~~L~~~~I~av 318 (559)
T 3p9d_A 239 GGNVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGIDDLCLKEFVEAKIMGV 318 (559)
T ss_dssp SSSBCEEEETTCCSCCCCCTTCCEEECSSSCHHHHHHHHHHHHHHHHHHHHTTCCSEEEESSCCCGGGTHHHHHTTCEEE
T ss_pred cCCceEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCceE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHhCCeecccC------CCCCCCCCcceeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHH
Q 013920 316 KISSKFELRRFCRTTGAVAMLKL------CQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDD 389 (434)
Q Consensus 316 ~~v~~~~L~~ia~~tGa~ii~~~------~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e 389 (434)
+++++.+|+|||++|||++++++ ++++++++|+|+.|+++++|+++|++|++|+. +++|||+|||+|+.+++|
T Consensus 319 ~~~~k~~le~ia~~TGa~iis~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~-~~~~tI~lrG~te~~l~E 397 (559)
T 3p9d_A 319 RRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECILIKGTSK-HSSSSIILRGANDYSLDE 397 (559)
T ss_dssp SSCCHHHHHHHHHHSSCCCBCCSCCSTTCCCCCTTTSCCEEEEEEEECSSCEEECEEEESS-SCCCCEEEEESCHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCEEEeccccccccccCCHhHCccceEEEEEEEcCceEEEEEcCCC-CCEEEEEEcCCCHHHHHH
Confidence 99999999999999999999998 78889999999999999999999999999984 899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013920 390 LERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 390 ~~~~i~dal~~~~~~~~~~~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
.||+++||++++|+++++|++|||||++|++|+.+|++++.+++|
T Consensus 398 ~kr~l~DAL~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g 442 (559)
T 3p9d_A 398 MERSLHDSLSVVKRTLESGNVVPGGGCVEAALNIYLDNFATTVGS 442 (559)
T ss_dssp HHHHHHHHHHHHHHHHTSSCEECTTTTHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHHHHHHhhcCCEEeCccHHHHHHHHHHHHHhcccCh
Confidence 999999999999999999999999999999999999999988775
No 16
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d*
Probab=100.00 E-value=2.9e-91 Score=723.47 Aligned_cols=416 Identities=25% Similarity=0.460 Sum_probs=394.5
Q ss_pred cccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHHhhh
Q 013920 14 LKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQ 93 (434)
Q Consensus 14 ~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~ 93 (434)
++.+.+..+| ++++..|+.||..|+++++|||||+||+|||+++.|+++|||||+|||++|+++||+|+|+++++++|+
T Consensus 8 ~~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~akll~e~a~~qd 86 (528)
T 3p9d_D 8 NATFKNKEKP-QEVRKANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPVARMLVEVSAAQD 86 (528)
T ss_dssp CCSSCBCCCH-HHHHHHHHHHHHHHHHHHTTTSSTTCCCEEEECSSCCEEEECCHHHHHHHSCCCCTTHHHHHHHHHHHH
T ss_pred ccccchhcch-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEECCHHHHHHHcccCCHHHHHHHHHHHHhh
Confidence 4555566667 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhcccc
Q 013920 94 EEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQ 173 (434)
Q Consensus 94 ~~~GDGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~ 173 (434)
+++||||||+++||++||+++.+++.+|+||..|++||+.|.+.++++|+++++|. +..+++.|.++++|+++||+
T Consensus 87 ~e~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v----~~~~~e~l~~va~tsl~sK~ 162 (528)
T 3p9d_D 87 SEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILLEMCHKV----SLSDREQLVRAASTSLSSKI 162 (528)
T ss_dssp HHTCSCSHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTCCCC----CSCCHHHHHHHHHHHSCSSS
T ss_pred hhhCCChhhHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhhCCC----CCCCHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999998873 55678999999999999995
Q ss_pred -cCchhhHHHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccceeeeeEEEeecCC--C-CcceeecceEEEEeeecc
Q 013920 174 -FGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--G-SIKNMEKAKVAVFAGGVD 249 (434)
Q Consensus 174 -~~~~~~ls~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~--~-~~~~~~n~kIlll~~~l~ 249 (434)
..|+++|++|+++|+.++++...+.+|+++|+|++++|++++||++++|++|++++. . ||+.++||||++++++|+
T Consensus 163 ~~~~~~~i~~livdAv~~V~~~~~~~i~v~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~~~~m~~~ien~kIll~~~~le 242 (528)
T 3p9d_D 163 VSQYSSFLAPLAVDSVLKISDENSKNVDLNDIRLVKKVGGTIDDTEMIDGVVLTQTAIKSAGGPTRKEKAKIGLIQFQIS 242 (528)
T ss_dssp CSTTHHHHHHHHHHHHHTTCCTTTTCCCGGGSBCCCCCSSCSCCCEEESSCBCCCCCCCSSSCCSEESSEEEEEECCCSS
T ss_pred cchhHHHHHHHHHHHHHHhccccCCccceEEEEEEEecCCCccceEEEeeeEEeecccCcccCcccccCceEEEEecccc
Confidence 578999999999999999864334689999999999999999999999999999874 3 999999999999999999
Q ss_pred ccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCc-----CHHHHHHHHHCCeEEEEeCCHHHHH
Q 013920 250 TSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAV-----GEMALHFCERYKLMVLKISSKFELR 324 (434)
Q Consensus 250 ~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I-----~~~al~~l~~~~I~~v~~v~~~~L~ 324 (434)
+++++.++++.++++++++.+.++|++++.+++++|.+.|+||||++++| ++.+++||.++||++++++++++|+
T Consensus 243 ~~k~~~~~~i~i~~~~~~~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~~~a~~~~al~~L~~~~I~av~~~~k~~le 322 (528)
T 3p9d_D 243 PPKPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSKLNIMVVKDIEREEIE 322 (528)
T ss_dssp CCCCSSEEEEEESSSSHHHHHTHHHHHHHHHHHHHHHHTTCCEEEESSCSCTTSCSCHHHHHHTTTSCCEEECCCTHHHH
T ss_pred ccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCcccccCCHHHHHHHHHcCcEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHhCCeecccCCCCCCCCCcceeeEEEEEEcceEEEEEeecC--CCCceEEEEEecCCHhHHHHHHHHHHHHHHHHH
Q 013920 325 RFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEG--GGNSVSTVVLRGSTDSILDDLERAVDDGVNTYK 402 (434)
Q Consensus 325 ~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~--~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~ 402 (434)
|||++|||++++++++++++++|+|+.|++.++|+++|++|++|+ ..+++|||+|||+|+.+++|.||+++||++++|
T Consensus 323 ~ia~~tGa~ii~~~~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~~~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r 402 (528)
T 3p9d_D 323 FLSKGLGCKPIADIELFTEDRLDSADLVEEIDSDGSKIVRVTGIRNNNARPTVSVVIRGANNMIIDETERSLHDALCVIR 402 (528)
T ss_dssp HHHHHHTCCCCSCSTTCCSSSEEEESCEECCEETTEECCBCTTBCCGGGCCCCEEECCCSSTTHHHHHHHHHTTTHHHHH
T ss_pred HHHHHHCCEEecccccCCHHHCCcccEEEEEEECCEEEEEEEcccccCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999996 226899999999999999999999999999999
Q ss_pred HhhcCCeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013920 403 AMCRDSRIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 403 ~~~~~~~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
+++++|++|||||++|++|+.+|++++.+++|
T Consensus 403 ~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~g 434 (528)
T 3p9d_D 403 CLVKERGLIAGGGAPEIEISRRLSKEARSMEG 434 (528)
T ss_dssp HHHHSSCEEETTTHHHHHHHHHHHHCCTTSCH
T ss_pred HHHhcCCccCCCCHHHHHHHHHHHHHhhccCh
Confidence 99999999999999999999999999887664
No 17
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=1e-89 Score=710.30 Aligned_cols=404 Identities=24% Similarity=0.415 Sum_probs=385.8
Q ss_pred cChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHHhhhhhhCCCch
Q 013920 22 SGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGAN 101 (434)
Q Consensus 22 ~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt 101 (434)
+| ++++..||.||++|++++||||||+||+|||+++.|+++|||||+|||++|+++||+|+|+++++++|++++|||||
T Consensus 7 ~~-~~a~~~ni~a~~~la~~vkttlGPkG~~kml~~~~g~~~iTnDG~tIlk~i~v~hp~akll~~~a~~qd~e~GDGTT 85 (517)
T 3iyg_Z 7 RA-QAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTT 85 (517)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHHHHHHHHhCCCce
Confidence 45 69999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhccccc-CchhhH
Q 013920 102 LTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQF-GQEEIL 180 (434)
Q Consensus 102 s~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~-~~~~~l 180 (434)
|+++||++||++|.+++.+|+||..|++||+.|.+.++++|++++++. +. +++.|.++++|+++||+. .+.++|
T Consensus 86 tvvvLa~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v----~~-~~~~L~~va~tsl~sKi~~~~~d~l 160 (517)
T 3iyg_Z 86 SNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSK----EM-DRETLIDVARTSLRTKVHAELADVL 160 (517)
T ss_pred eHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhCcCC----CC-CHHHHHHHHHHHhccccchhHHHHH
Confidence 999999999999999999999999999999999999999999998873 32 688999999999999964 689999
Q ss_pred HHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccceeeeeEEEeecCC--CCcceeecceEEEEeeeccccccccceE
Q 013920 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTSATETKGT 258 (434)
Q Consensus 181 s~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~--~~~~~~~n~kIlll~~~l~~~~~~~~~~ 258 (434)
++++++|+..+.+++ ..+|+++|+|++++||+..||++++|++|++++. .||++++||||++++++|++++++.+++
T Consensus 161 a~l~vdaV~~V~~~~-~~~dl~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~p~m~~~ien~kIll~~~~le~~k~e~~~~ 239 (517)
T 3iyg_Z 161 TEAVVDSILAIKKQD-EPIDLFMVEIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSG 239 (517)
T ss_pred HHHHHHHhheeccCC-CcCChhHheeeeecCCCccccceEeeEEEeccCCCCCccccccCCeEEEeccccccccccccee
Confidence 999999999987643 4689999999999999999999999999999874 5999999999999999999999999999
Q ss_pred EEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCe---------EEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHH
Q 013920 259 VLIHNAEQLENYAKTEEAKVEGLIKAVAESGAE---------VIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRT 329 (434)
Q Consensus 259 v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~---------lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia~~ 329 (434)
+.++++++++.+.++|++++++.+++|...+++ |||++++|++.+++||.++||++++++++++|+|||++
T Consensus 240 ~~i~~~~~l~~~~~~E~~~i~~~v~~I~~~~~~v~~~~~~~lvIi~~~~I~d~al~~L~~~gI~~v~~v~~~~leria~~ 319 (517)
T 3iyg_Z 240 FFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIIALRRAKRRNMERLTLA 319 (517)
T ss_pred EEeCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCceEEEecccCCHHHHHHHHHCCCEEEEecCHHHHHHHHHH
Confidence 999999999999999999999999999988877 59999999999999999999999999999999999999
Q ss_pred hCCeecccCCCCCCCC-CcceeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcCC
Q 013920 330 TGAVAMLKLCQPNPDD-LGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDS 408 (434)
Q Consensus 330 tGa~ii~~~~~l~~~~-lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~~ 408 (434)
|||+++++++++++++ +|+|+ |++.++|+++|++|++|+. ++.|||+|||+|+.+++|.||+++||++++|+++++|
T Consensus 320 tGa~iv~~l~~l~~~~~LG~a~-v~e~~ig~~~~~~~~g~~~-~~~~TI~lrG~t~~~l~E~kr~l~DAl~~~r~av~~~ 397 (517)
T 3iyg_Z 320 CGGIALNSLDDLNPDCLLGHAG-VYEYTLGEEKFTFIEKCNN-PRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDG 397 (517)
T ss_pred hCCEEecchhhCcccccCCcce-EEEEEEcCceEEEEeCCCC-chhheeeecCCcHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999 99999 9999999999999999984 8899999999999999999999999999999999999
Q ss_pred eEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013920 409 RIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 409 ~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
++|||||++|++|+.+|++++.+++|
T Consensus 398 ~iVpGGGa~e~~~s~~L~~~~~~~~g 423 (517)
T 3iyg_Z 398 CVVPGAGAVEVAMAEALVKYKPSVKG 423 (517)
T ss_pred eEecCccHHHHHHHHHHHHHhccCCH
Confidence 99999999999999999999987765
No 18
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e*
Probab=100.00 E-value=9.2e-90 Score=716.46 Aligned_cols=412 Identities=27% Similarity=0.430 Sum_probs=387.4
Q ss_pred ccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHHhhhhhhCC
Q 013920 19 KHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGD 98 (434)
Q Consensus 19 ~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GD 98 (434)
+..+| ++++..|+.||..|++++||||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|++++||
T Consensus 39 ~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GD 117 (562)
T 3p9d_E 39 KRQHG-LEAKKSHILAARSVASIIKTSLGPRGLDKILISPDGEITITNDGATILSQMELDNEIAKLLVQLSKSQDDEIGD 117 (562)
T ss_dssp SCSHH-HHHHHHHHHHHHHHHHHTTTSSSTTCCEEEEECSSSCEEEESCHHHHHHHSCCCSHHHHHHHHHHHHHHHHTSS
T ss_pred eecch-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCEEEECCHHHHHHHccCCCHHHHHHHHHHHHHHhhcCC
Confidence 33446 79999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCC--HHHHHHHHHHhhcccc-cC
Q 013920 99 GANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRN--TEEVIYRMKAAVASKQ-FG 175 (434)
Q Consensus 99 Gtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~--~~~l~~i~~t~l~sk~-~~ 175 (434)
||||+++||++||+++.+++.+|+||..|++||+.|.+.++++|++++++... +..+ ++.|.++++|+++||+ ..
T Consensus 118 GTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~--~~~~~~~e~L~~vA~tSl~sK~i~~ 195 (562)
T 3p9d_E 118 GTTGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDISA--SNDELFRDFLLRAAKTSLGSKIVSK 195 (562)
T ss_dssp CTTHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTTTTSSSSB--CCCSSCHHHHHHHHHHHHSSSTTTT
T ss_pred CcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccCcCC--CcchhhHHHHHHHHHHhcCCchhHH
Confidence 99999999999999999999999999999999999999999999999887421 1112 3789999999999995 56
Q ss_pred chhhHHHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccceeeeeEEEeecCC--CCccee------ecceEEEEeee
Q 013920 176 QEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNM------EKAKVAVFAGG 247 (434)
Q Consensus 176 ~~~~ls~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~--~~~~~~------~n~kIlll~~~ 247 (434)
+.++|++++++|+..+.+...+++|+++|+|++++|++++||++++|++|++++. .||+.+ +|+||++++++
T Consensus 196 ~~d~la~l~vdAV~~V~~~~~~~~d~~~I~I~k~~Ggs~~ds~lveGmv~dk~~~sp~m~~~~~~~~~~~~~kIall~~~ 275 (562)
T 3p9d_E 196 DHDRFAEMAVEAVINVMDKDRKDVDFDLIKMQGRVGGSISDSKLINGVILDKDFSHPQMPKCVLPKEGSDGVKLAILTCP 275 (562)
T ss_dssp THHHHHHHHHHHHHTSSTTTCSCCCCCCCEEEEESSSCGGGCEEESSEEESSCCCTTSCCC-----TTCSSCEECEEESC
T ss_pred HHHHHHHHHHHHheeecccccCCCCcccEEEEEecCCChhhhceeeeEEEecCCCCCCcCcccccccccccceEEEeccc
Confidence 8999999999999999764445789999999999999999999999999999985 688888 89999999999
Q ss_pred ccccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHH
Q 013920 248 VDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFC 327 (434)
Q Consensus 248 l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia 327 (434)
|++.+++.++++.+++++++..+.++|++++++++++|.+.|+||||++++|++.+++||.++||++++++++++|+|||
T Consensus 276 le~~k~~~~~~~~Iss~~~~~~~~~~E~~~l~~~lekI~~~g~~vvI~~~~I~~~Al~~L~~~~I~~v~~v~k~~le~ia 355 (562)
T 3p9d_E 276 FEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWGFDDEANHLLLQNDLPAVRWVGGQELEHIA 355 (562)
T ss_dssp CSSCCCSSCCCCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHTCSCCEECSSCCSHHHHHHHTTTCCCEECCCTTTHHHHH
T ss_pred ccccccccCceEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHCCCEEEeccCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeecccCCCCCCCCCcceeeEEEEEEcc--eEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhh
Q 013920 328 RTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGG--ARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMC 405 (434)
Q Consensus 328 ~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~--~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~ 405 (434)
++|||++++++++++++++|+|+.|+++++|+ ++|++|++|+. ++.|||+|||+|+.+++|.||+++||++++|+++
T Consensus 356 ~~TGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~i~g~~~-~~~~TIllrG~te~~l~E~kr~i~DAL~~~r~av 434 (562)
T 3p9d_E 356 ISTNGRIVPRFQDLSKDKLGTCSRIYEQEFGTTKDRMLIIEQSKE-TKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLV 434 (562)
T ss_dssp HHHCCCEEESSSCCCTTSCEECSCEEEECCSSSSCCEEEECCCSC-CSCCEEEEECTTTTTHHHHTHHHHHHHHHHHHHH
T ss_pred HHhCCEEEeccccCCHHHCCcceEEEEEEeccCCceEEEEecCCC-CCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999985 89999999984 8999999999999999999999999999999999
Q ss_pred cCCeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013920 406 RDSRIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 406 ~~~~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
++|++|||||++|++|+.+|++++.+++|
T Consensus 435 ~~g~iVpGGGa~e~~~s~~L~~~~~~~~g 463 (562)
T 3p9d_E 435 KDSRVVYGGGAAEVTMSLAVSEEADKQRG 463 (562)
T ss_dssp HSCCEEETTTHHHHHHHHHHHHHHHTTCT
T ss_pred hCCCcCCCCcHHHHHHHHHHHHHhccCcc
Confidence 99999999999999999999999988775
No 19
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B
Probab=100.00 E-value=3.9e-90 Score=719.01 Aligned_cols=418 Identities=27% Similarity=0.449 Sum_probs=391.4
Q ss_pred ccccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHH
Q 013920 11 QSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGK 90 (434)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~ 90 (434)
..+|++++++.+| ++++..|+.||..|+++++|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|+
T Consensus 5 ~~~~~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~~~hP~Akll~e~a~ 83 (590)
T 3p9d_C 5 VVFMNASQERTTG-RQAQISNITAAKAVADVIRTCLGPKAMLKMLLDPMGGLVLTNDGHAILREIDVAHPAAKSMLELSR 83 (590)
T ss_dssp -CCSCTTCCBCTT-HHHHHTTHHHHHHHHHHSTTTCSSSCCCCEEECTTTCCBCCCCHHHHHHHSCCCCHHHHTHHHHTT
T ss_pred eEeecCCcchhhH-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEECCHHHHHHHhhCCCHHHHHHHHHHH
Confidence 4678999999999 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhCCCchHHHHHHHHHHHHHHHH-HHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhh
Q 013920 91 AQQEEIGDGANLTISFAGEILQGAEEL-IRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAV 169 (434)
Q Consensus 91 ~~~~~~GDGtts~vlLa~~ll~~a~~l-i~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l 169 (434)
+|++++||||||+++||++||++|.++ +.+|+||..|++||+.|++.++++|+++++|. +..+++.|.++++|++
T Consensus 84 ~qd~e~GDGTTtvvVLA~eLL~~a~~l~l~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v----~~~~~e~L~~vA~tsl 159 (590)
T 3p9d_C 84 TQDEEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVIIIQALKKALTDALEVIKQVSKPV----DVENDAAMKKLIQASI 159 (590)
T ss_dssp THHHHCSSCHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHCCTT----TTCCTHHHHHHHTTTS
T ss_pred hhhhhhCCCccchHHHHHHHHhhhHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhcc----ccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999 99999999999999999999999999998773 5556889999999999
Q ss_pred cccc-cCchhhHHHHHHHHHHHhCCCCCC--------Ccccc-ceEEEEcCCCCcccceeeeeEEEeecCC--CCcceee
Q 013920 170 ASKQ-FGQEEILCPLIADACIQVCPKNPA--------NFNVD-NVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNME 237 (434)
Q Consensus 170 ~sk~-~~~~~~ls~Lv~~ai~~v~~~~~~--------~~~~~-~I~i~~i~Gg~~~dS~~i~G~v~~~~~~--~~~~~~~ 237 (434)
+||+ .+|+++|++|+++|+..+++++.. .+|++ +|+|++++||++.||++++|++|++++. .||+.++
T Consensus 160 sSK~~~~~~~~i~~livdAv~~V~~~~~~~~~~~~~~~vDl~~~I~I~ki~Ggs~~ds~lv~Gmvfdk~~~~~~m~~~~e 239 (590)
T 3p9d_C 160 GTKYVIHWSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDIKRYVRVEKIPGGDVLDSRVLKGVLLNKDVVHPKMSRHIE 239 (590)
T ss_dssp TTSTTGGGHHHHHHHHHHHHTTSTTCC-----------CCCSSSSCEEEESSCCGGGCBCCSSEEECCCCSCTTSCSCEE
T ss_pred hcccccccHHHHHHHHHHHHHHhcccccCccccccccccchhhceEEEEecCCCcccceeeeEEEEecccCCCCCcceee
Confidence 9995 578999999999999999875311 35554 7999999999999999999999999875 6899999
Q ss_pred cceEEEEeeeccccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEe
Q 013920 238 KAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKI 317 (434)
Q Consensus 238 n~kIlll~~~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~ 317 (434)
||||++++++|++++++.++++.+++++++.++++.|++++++++++|.+.||+|||++++|++.+++||.++||++|++
T Consensus 240 n~kIll~d~~Le~~K~e~~~~v~Is~~~~l~~il~~E~~~l~~~vekI~~~g~~vII~e~~I~d~Al~~L~k~~I~av~~ 319 (590)
T 3p9d_C 240 NPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVITEKGVSDLAQHYLLKGGCSVLRR 319 (590)
T ss_dssp SCCEECCCCCCSCCCCTTTEECCBCSTTHHHHHHHHHHHHHHHHHHHHHTTCCSEECCSSCCCTHHHHHHHHTTCCCCCC
T ss_pred eeEEEEEcccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCcCHHHHHHHHhccceeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhCCeecccCCCCCCCCCcc-eeeEEEEEEcceEEEEEeecCCCCce----------------------
Q 013920 318 SSKFELRRFCRTTGAVAMLKLCQPNPDDLGY-VDSVSVEEIGGARVTIVRNEGGGNSV---------------------- 374 (434)
Q Consensus 318 v~~~~L~~ia~~tGa~ii~~~~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~---------------------- 374 (434)
+++.+|+|||++|||++++++++++++++|+ |+.|++..+|+++|++|++|+. ++.
T Consensus 320 ~~k~~le~ia~~TGa~iis~l~~~~~~~LG~~a~~v~~~~ig~d~~~~i~g~~~-~~~~~~~~~~~~~~~~~k~~~~~~~ 398 (590)
T 3p9d_C 320 VKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFKVEMIGDEYFSFLDNCKE-PGSGSGWSHPQFEKGSGKRRWKKNF 398 (590)
T ss_dssp CCHHHHHHHHHHHTCCCCSCSTTCCTTSCBCCCSEEECCEETTEECEEECC-----------------------------
T ss_pred CCHHHHHHHHHHhCCceeecccCCCHHHhCCcCCEEEEEEEcCcEEEEEeCCCC-ccccccccccccccccchhhhhcch
Confidence 9999999999999999999999999999999 9999999999999999999964 555
Q ss_pred ----------------------------------EEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcCCeEEeCCCHHHHH
Q 013920 375 ----------------------------------STVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIE 420 (434)
Q Consensus 375 ----------------------------------~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGgG~~E~~ 420 (434)
|||+|||+|+.+++|.||+++||++++|+++++|++|||||++|++
T Consensus 399 ~~~~i~~r~~~i~~~~~~~~~~~~~~~~~l~ggv~tI~lrg~te~~l~E~kr~i~DAl~a~r~av~~~~iVpGGGa~e~~ 478 (590)
T 3p9d_C 399 IAVSAANRFKKISSSGALGSGHHHHHHHHGSGKACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMA 478 (590)
T ss_dssp -----------------------------CCCSCCCEEEECSSTTTHHHHHHHHHHHHHHHHHHHHCCCEECTTTHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCCHHHHHHHhhcCCeeEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEeCccHHHHH
Confidence 9999999999999999999999999999999998899999999999
Q ss_pred HHHHHHHhhhcCCC
Q 013920 421 LARRLKEFSFKETG 434 (434)
Q Consensus 421 l~~~L~~~a~~~~g 434 (434)
++.+|++++++++|
T Consensus 479 ~s~~L~~~~~~~~g 492 (590)
T 3p9d_C 479 VSVKLAEKAKQLEG 492 (590)
T ss_dssp HHHHHHHHHHHSCS
T ss_pred HHHHHHHHhhcCCh
Confidence 99999999888765
No 20
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f*
Probab=100.00 E-value=2.3e-90 Score=720.05 Aligned_cols=418 Identities=24% Similarity=0.406 Sum_probs=391.4
Q ss_pred ccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHHhh
Q 013920 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQ 92 (434)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~ 92 (434)
+++++++..+| .+++..||.||++|++++||||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|
T Consensus 5 ~~~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~akll~e~a~~q 83 (546)
T 3p9d_F 5 LLNPKAESLRR-DAALKVNVTSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQSPTAVLIARAAAAQ 83 (546)
T ss_dssp SSCTTEEEEEH-HHHHHHHHHHHTHHHHHHTTTSSTTCCEEEEECTTSCEEEECCHHHHHHTSCCCCHHHHHHHHHHHHH
T ss_pred ccCCCcchhhH-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHHHHH
Confidence 34556667777 69999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhccc
Q 013920 93 QEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASK 172 (434)
Q Consensus 93 ~~~~GDGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk 172 (434)
++++||||||+++||++||++|.+++.+|+||..|++||+.|.+.++++|++++++... +..+++.|.++++|++++|
T Consensus 84 d~e~GDGTTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~--~~~~~~~L~~vA~tsl~sK 161 (546)
T 3p9d_F 84 DEITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLDEFKISKTN--LSNDREFLLQVARSSLLTK 161 (546)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHHHTTTTBCHHHHHHHHHHHHHHHHHHHHHHCCCCSS--SSTTCHHHHHHHHHHTCST
T ss_pred HHHhCCCcccHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhccccc--cccCHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999987421 2256889999999999999
Q ss_pred cc-CchhhHHHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccceeeeeEEEeecCC--CCcceeecceEEEEeeecc
Q 013920 173 QF-GQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVD 249 (434)
Q Consensus 173 ~~-~~~~~ls~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~--~~~~~~~n~kIlll~~~l~ 249 (434)
+. .+.++|++++++|+..+.++....+|+++|+|++++||+..||++++|++|++++. .||+.++||||++++|+|+
T Consensus 162 i~~~~~d~la~l~vdaV~~V~~~~~~~~dl~~I~i~ki~Gg~~~ds~lv~G~v~dk~~~~~~m~~~~en~kIll~~~~Le 241 (546)
T 3p9d_F 162 VDADLTEVLTPIVTDAVLSVYDAQADNLDLHMVEIMQMQHLSPKDTTFIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLE 241 (546)
T ss_dssp THHHHCSSHHHHHHHHHHHTHHHHHTTCCGGGEEEECCCCSCTTTCCCCSSCEESCCCCSSSSCSSBCSCCCCEECCCSS
T ss_pred cchhHHHHHHHHHHHhheEeecCCCCcccchheEEEEecCCCccccEEEeeEEEecccccccCcceecCceEEEecCccc
Confidence 64 67899999999999998743233689999999999999999999999999999874 5999999999999999999
Q ss_pred ccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcC----------CeEEEeCCCcCHHHHHHHHHCCeEEEEeCC
Q 013920 250 TSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESG----------AEVIVSGAAVGEMALHFCERYKLMVLKISS 319 (434)
Q Consensus 250 ~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~----------~~lvl~~~~I~~~al~~l~~~~I~~v~~v~ 319 (434)
+++++.++++.++++++++.++++|++++++.+++|...+ ++|||++++|++.+++||.++||+++++++
T Consensus 242 ~~k~e~~~~~~i~~~~~~~~~~~~E~~~~~~~v~~I~~~~~~v~~~~~g~~~vIi~~k~I~~~Al~~L~~~gI~~vr~v~ 321 (546)
T 3p9d_F 242 YEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSLDVFAKHNILALRRAK 321 (546)
T ss_dssp SCCCSSCBCCCCCSSSCHHHHHHHHHHHHHHHHHHHHHCC-----------CEEEESSCCCHHHHHHHTTTTCEEECCCC
T ss_pred ccccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceEEEecCcCcHHHHHHHHHCCCeeEecCC
Confidence 9999999999999999999999999999999999998754 349999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCeecccCCCCCCCCCcceeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHH
Q 013920 320 KFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVN 399 (434)
Q Consensus 320 ~~~L~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~ 399 (434)
+++|+|||++|||++++++++++++++|+|+.|+++++|+++|+||++|+. ++.|||+|||+|+.+++|.||+++||++
T Consensus 322 ~~~leria~~tGa~ii~~l~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~-~~~~tI~lrG~te~~l~E~kr~l~DAl~ 400 (546)
T 3p9d_F 322 RRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGEEKFTYVTENTD-PKSCTILIKGSTHYALAQTKDAVRDGLR 400 (546)
T ss_dssp HHHHHHHHHTTTBCCCCCCSSCSTTCCBCCCCBCBCCCSSCCCEECSSCSC-CSCEEEECCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCEEecchhhCCHhHCCcccEEEEEEecCceEEEEecCCC-CceEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999984 8999999999999999999999999999
Q ss_pred HHHHhhcCCeEEeCCCHHHHHHHHHHHH---hhhcCCC
Q 013920 400 TYKAMCRDSRIVPGAAATEIELARRLKE---FSFKETG 434 (434)
Q Consensus 400 ~~~~~~~~~~vvpGgG~~E~~l~~~L~~---~a~~~~g 434 (434)
++|+++++|++|||||++|++++.+|++ ++++++|
T Consensus 401 ~~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~~~~g 438 (546)
T 3p9d_F 401 AVANVLKDKNIIPGAGAFYIALSRYLRSANMNKLGAKG 438 (546)
T ss_dssp HHHHHTTSCCEEETTTHHHHHHHHHHHHHHTTTTTTTS
T ss_pred HHHHHhcCCcEEeCCCHHHHHHHHHHHhhhhhhhcCch
Confidence 9999999999999999999999999999 5777765
No 21
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b*
Probab=100.00 E-value=7.8e-89 Score=706.43 Aligned_cols=413 Identities=23% Similarity=0.384 Sum_probs=389.7
Q ss_pred cccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEc-CCCCEEEecCHHHHHhhccccChHHHHHHHHHH
Q 013920 12 SMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVIN-HLDKLFVTNDAATIVNELEVQHPAAKLLVLAGK 90 (434)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~-~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~ 90 (434)
.+|+++.+..+| ++++..|+.||..|++++||||||+||+|||++ +.|+++|||||+|||++|+++||+|+|++++|+
T Consensus 4 ~~l~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~~G~~~iTnDG~tIlk~i~~~hP~Akll~e~a~ 82 (527)
T 3p9d_B 4 QIFGDQVTEERA-ENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNISK 82 (527)
T ss_dssp CSSCSCEEEEES-HHHHHHHHHHHHHHHHHHHSCSSSSCCEEEEECTTTCCEECCCCHHHHHHTCCCCCHHHHHHHHHHH
T ss_pred ehhcCcchhhhh-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEecCCCCeEEeCCHHHHHHHhccCCHHHHHHHHHHH
Confidence 357889888889 799999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred hhhhhhCCCchHHHHHHHHHHHHHHHHHHc-CCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCC---HHHHHHHHH
Q 013920 91 AQQEEIGDGANLTISFAGEILQGAEELIRM-GLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRN---TEEVIYRMK 166 (434)
Q Consensus 91 ~~~~~~GDGtts~vlLa~~ll~~a~~li~~-gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~---~~~l~~i~~ 166 (434)
+|++++||||||+++||++||+++.+++.+ |+||..|++||+.|.+.++++|++++++. +.++ ++.|.++++
T Consensus 83 ~qd~~~GDGTTtavVLA~~Ll~ea~~lv~~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v----~~~~~~~~~~l~~vA~ 158 (527)
T 3p9d_B 83 VQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDN----SHDKTMFREDLIHIAK 158 (527)
T ss_dssp HHHHHTCSCTTTTTHHHHHHHHHHHHHTC---CCHHHHHHHHHHHHHHHHHHHHHTCBCC----CCCHHHHHHHHHHHHH
T ss_pred HhHhhhCCcHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhCccC----CCcchhhHHHHHHHHH
Confidence 999999999999999999999999999999 99999999999999999999999998873 2222 789999999
Q ss_pred Hhhcccc-cCchhhHHHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccceeeeeEEEeecCCC-CcceeecceEEEE
Q 013920 167 AAVASKQ-FGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVG-SIKNMEKAKVAVF 244 (434)
Q Consensus 167 t~l~sk~-~~~~~~ls~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~~-~~~~~~n~kIlll 244 (434)
|+++||+ +.++++|++|+++|+.++++++ |+++|+|++++||+.+||++++|++|++++.+ +|+.++||||+++
T Consensus 159 tSl~sK~~~~~~~~i~~li~dAv~~V~~~~----~~~~I~V~k~~gg~~~ds~lv~G~~~dk~~~~~~p~~~~n~kIlll 234 (527)
T 3p9d_B 159 TTLSSKILSQDKDHFAELATNAILRLKGST----NLEHIQIIKILGGKLSDSFLDEGFILAKKFGNNQPKRIENAKILIA 234 (527)
T ss_dssp HHHTTSGGGGGHHHHHHHHHHHHHTTCTTC----CTTSSCCCBCCCSSSSCCCEESSCCCSCCCSSSCCSCCSSCEEEEE
T ss_pred hccccCcccchHHHHHHHHHHHHHHhcccC----CcceEEEEEcCCCCccccEEEEeEEEecccCCCCCeeeecceEEEe
Confidence 9999995 5678999999999999998653 56789999999999999999999999998853 4888999999999
Q ss_pred eeeccccccc-cceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHH
Q 013920 245 AGGVDTSATE-TKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFEL 323 (434)
Q Consensus 245 ~~~l~~~~~~-~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L 323 (434)
+++|++++++ ++.++.+++++++..+.++|++++++++++|.+.|++||+++++|++.+++||.++||++++++++.+|
T Consensus 235 ~~~le~~k~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~l~~I~~~g~~vvi~~~~I~~~al~~L~~~~i~av~~~~~~dl 314 (527)
T 3p9d_B 235 NTTLDTDKVKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQLIYDYPEQLFTDLGINSIEHADFEGV 314 (527)
T ss_dssp CSCSSCCCCSSCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCBEEESSCCCTTTHHHHHHHTCBCCCCCCHHHHH
T ss_pred ccccccccccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHCCCEEEecCCHHHH
Confidence 9999999998 588999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCeecccCCCCCCCCCcceeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHH
Q 013920 324 RRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKA 403 (434)
Q Consensus 324 ~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~ 403 (434)
+|||++|||++++++++++++++|+|+.|+++.+|+++|++|++|+. +++|||+|||+|+.+++|.||+++||++++|+
T Consensus 315 e~ia~~tGa~iv~~~~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~-~~~~tI~lrg~te~~l~E~kr~i~DAl~~~r~ 393 (527)
T 3p9d_B 315 ERLALVTGGEVVSTFDEPSKCKLGECDVIEEIMLGEQPFLKFSGCKA-GEACTIVLRGATDQTLDEAERSLHDALSVLSQ 393 (527)
T ss_dssp HHHHHHTCCCCCSTTSCCTTSCEECSBCCBCCCSSSCCBCCBCSSCC-SCCEECBCCTTCTTHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHhCCEEecchhhCCHHHCCCCcEEEEEEecceEEEEEECCCC-CCEEEEEEcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999984 89999999999999999999999999999999
Q ss_pred hhcCCeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013920 404 MCRDSRIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 404 ~~~~~~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
++++|++|||||++|++++.+|++++.+++|
T Consensus 394 av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g 424 (527)
T 3p9d_B 394 TTKETRTVLGGGCAEMVMSKAVDTEAQNIDG 424 (527)
T ss_dssp HHHCCCEEETTTHHHHHHHHHHHHHHHHHCS
T ss_pred HHhcCCcccCCcHHHHHHHHHHHHHHhccCc
Confidence 9999999999999999999999999877665
No 22
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}
Probab=100.00 E-value=2.7e-82 Score=652.91 Aligned_cols=376 Identities=28% Similarity=0.484 Sum_probs=294.7
Q ss_pred eeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHHhhhhhhCCCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHH
Q 013920 54 MVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTK 133 (434)
Q Consensus 54 li~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~ 133 (434)
||+++.|+++|||||+|||++|+++||+|||++++|++|++++||||||+++||++||+++.+++++|+||..|++||+.
T Consensus 1 mlv~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDGTTtvvvLa~~LL~~a~~ll~~GihP~~I~~G~~~ 80 (500)
T 3aq1_B 1 MLVDSMGDIVITNDGATILKEMDIQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSKAEELIMKGVHSTIISEGYRH 80 (500)
T ss_dssp ------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CccCCCCCeEEECcHHHHHHhCcCCCHHHHHHHHHHHhhhhhhCCChHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhccccc-CchhhHHHHHHHHHHHhCCC--CCCCcc-ccceEEEEc
Q 013920 134 AINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQF-GQEEILCPLIADACIQVCPK--NPANFN-VDNVRVAKL 209 (434)
Q Consensus 134 a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~-~~~~~ls~Lv~~ai~~v~~~--~~~~~~-~~~I~i~~i 209 (434)
|++.++++|++++++. +..|++.|.++++|+++||++ +|+++|++|+++|+.+++++ +..++| +++|+|+++
T Consensus 81 A~~~a~~~L~~~s~~v----~~~d~~~l~~va~tsl~sKi~~~~~~~i~~li~dAv~~v~~~~~g~~~~di~~~I~V~k~ 156 (500)
T 3aq1_B 81 AAEKCREILETITIAI----SPDDEAALIKIAGTAITGKGAEAYKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKR 156 (500)
T ss_dssp HHHHHHHHHHHHCEEC----CTTCHHHHHHHHHTTCCSSSTTSSHHHHHHHHHHHHTTSEECCSSSCEECHHHHEEEEEE
T ss_pred HHHHHHHHHHHhcCCC----CCCcHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHhcccccCCccccccccEEEEEe
Confidence 9999999999999873 445789999999999999965 68999999999999999765 333588 789999999
Q ss_pred CCCCcccceeeeeEEEeecCC--CCcceeecceEEEEeeeccccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHH
Q 013920 210 LGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAE 287 (434)
Q Consensus 210 ~Gg~~~dS~~i~G~v~~~~~~--~~~~~~~n~kIlll~~~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~ 287 (434)
+|++++||++++|++|++++. .||++++||||++++++|++++++.++++.++++++++.+.++|++++++++++|.+
T Consensus 157 ~G~~~~ds~lv~G~v~dk~~~~~~m~~~i~n~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~ 236 (500)
T 3aq1_B 157 AGGSIDDSELIDGLVIDKERSHPNMPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIA 236 (500)
T ss_dssp ESSCGGGCEEESEEEESCCCSSTTSCSEEEEEEEEEESSCBCC-------------------------CHHHHHHHHHHT
T ss_pred cCCCccceEEEeeeEEeecCCCCCCcccccCCEEEEEeCCccccccccceeEeeCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999984 699999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcceeeEEEEEEcceEEEEEee
Q 013920 288 SGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRN 367 (434)
Q Consensus 288 ~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~ 367 (434)
.|+||||++++|++.+++||.++||++|+++++++|+|||++|||++++++++++++++|+|+.|++.++|+++|++|++
T Consensus 237 ~g~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g 316 (500)
T 3aq1_B 237 SGANVVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGTAGLVEEKEVRGGKMTYVTG 316 (500)
T ss_dssp TCCSEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHCCCCBSCTTCCCSTTCEEEEEEEEEECSSSEEEEEEE
T ss_pred hCcCEEEECCCcCHHHHHHHHHCCEEEEEeCCHHHHHHHHHHhCCeEecccccCCHhHCCCceEEEEEEecCeEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcCCeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013920 368 EGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 368 ~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
|+. ++.|||+|||+|+.+++|.||+++||++++|+++++|++|||||++|++|+.+|++++.+++|
T Consensus 317 ~~~-~~~~TI~lrG~t~~~l~E~er~l~Dal~~~r~~~~~~~iVpGGGa~e~~~~~~L~~~~~~~~g 382 (500)
T 3aq1_B 317 CQN-SKAVTVLLHGGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGGSSEVELSLRLSEYASTLKG 382 (500)
T ss_dssp ETT-CCCEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHSEEEETTTHHHHHHHHHHHHHHHTCCS
T ss_pred CCC-CceEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHHHhhhcCc
Confidence 984 899999999999999999999999999999999999999999999999999999999987765
No 23
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Probab=100.00 E-value=8e-73 Score=585.62 Aligned_cols=361 Identities=20% Similarity=0.293 Sum_probs=329.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccCh----HHHHHHHHHHhhhhhhCCCc
Q 013920 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP----AAKLLVLAGKAQQEEIGDGA 100 (434)
Q Consensus 25 ~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGt 100 (434)
++++..|+.||..|+++++|||||+||+|||+++.|+++|||||+|||++|+++|| +|+|+++++++|++++||||
T Consensus 9 ~~ar~~~~~~~~~la~~vkttLGPkG~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~~qd~e~GDGT 88 (543)
T 1we3_A 9 EAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASKTNDVAGDGT 88 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHcccCChHHhHHHHHHHHHHHhhheecCCCc
Confidence 69999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhcccccCchhhH
Q 013920 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (434)
Q Consensus 101 ts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (434)
||+++||++||+++.+++.+|+||..|++||+.|++.+++.|++++.+. .+++.|.++++++++ +++|
T Consensus 89 TtvvVLA~~LL~ea~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v------~~~~~l~~vA~iS~~------~~~i 156 (543)
T 1we3_A 89 TTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIPV------EDRKAIEEVATISAN------DPEV 156 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTCBCC------CSHHHHHHHHHHHHT------CHHH
T ss_pred chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccC------CCHHHHHHhhhhhcC------CHHH
Confidence 9999999999999999999999999999999999999999999998773 368899999988875 5789
Q ss_pred HHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccc-eeeeeEEEeecCC---------CCcceeecceEEEEeeeccc
Q 013920 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNS-TIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDT 250 (434)
Q Consensus 181 s~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS-~~i~G~v~~~~~~---------~~~~~~~n~kIlll~~~l~~ 250 (434)
++++++|+.++++++ .|+|. .|+++++| ++++|++|++++. .|++.++||+|+++++++
T Consensus 157 ~~li~dAv~~V~~~g-------~I~Ve--~G~~~~ds~~lv~G~~~dkg~~~p~~vt~~~~m~~~~en~~Ill~d~~I-- 225 (543)
T 1we3_A 157 GKLIADAMEKVGKEG-------IITVE--ESKSLETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKV-- 225 (543)
T ss_dssp HHHHHHHHHTTCTTS-------EEEEE--ECSSSSCEEEEECSEEESCCBSSGGGCSBTTTTBCCEEEEEEEEESSCB--
T ss_pred HHHHHHHHHHhCcCC-------cEEEe--cCCccccceEEEcCEEEecCccccccccCcccCceeecCceEEEECCCc--
Confidence 999999999997643 36666 79999999 9999999999862 377789999999999864
Q ss_pred cccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHH------CCeEEEE-----eCC
Q 013920 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCER------YKLMVLK-----ISS 319 (434)
Q Consensus 251 ~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~------~~I~~v~-----~v~ 319 (434)
++++++. ++++++.+.|+||||++++|++.+++||.. .+|++|+ +++
T Consensus 226 -----------s~~~~l~-----------~~le~i~~~g~~lvii~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~~ 283 (543)
T 1we3_A 226 -----------SNVRELL-----------PILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRR 283 (543)
T ss_dssp -----------CCHHHHH-----------HHHHHHHTTTCCEEEEESCBCHHHHHHHHHHHHHTSCCEEEEECSSSHHHH
T ss_pred -----------CCHHHHH-----------HHHHHHHhcCCCEEEEcCCccHHHHHHHHHhccccceeEEEEeccchhhhh
Confidence 4566554 567889999999999999999999999987 4679999 667
Q ss_pred HHHHHHHHHHhCCeeccc-----CCCCCCCCCcceeeEEEEEEcceEEEEEeecCC------------------------
Q 013920 320 KFELRRFCRTTGAVAMLK-----LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGG------------------------ 370 (434)
Q Consensus 320 ~~~L~~ia~~tGa~ii~~-----~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~------------------------ 370 (434)
+++|+|||++|||+++++ +++++++++|+|+.|++ +.+++++|++|+.
T Consensus 284 ~~~le~ia~~tGa~ii~~~~g~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ 360 (543)
T 1we3_A 284 KEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRI---TKDETTIVGGKGKKEDIEARINGIKKELETTDSEYAR 360 (543)
T ss_dssp HHHHHHHHHHHCCCCBCTTTTCCGGGCCGGGCEEEEEEEE---CSSCEEEEEECCCHHHHHHHHHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHHHhCCceeeccccCCcccCCHHHCCCceEEEE---EcCEEEEEcCCCCHHHHHHHHHHHHHHhhccCchhHH
Confidence 899999999999999996 88999999999999976 4689999999973
Q ss_pred ----------CCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcCCeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013920 371 ----------GNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETG 434 (434)
Q Consensus 371 ----------~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGgG~~E~~l~~~L~~~a~~~~g 434 (434)
.++.|||+|||+|+.+++|.||+++||++++|+++++| +|||||++|++++.+|++++.+.+|
T Consensus 361 e~l~erlakl~~~~~tI~lrG~te~~l~E~~r~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~~~~~~g 433 (543)
T 1we3_A 361 EKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEG-IVPGGGVTLLRAISAVEELIKKLEG 433 (543)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhccC-cCCCccHHHHHHHHHHHHHhhccCc
Confidence 13789999999999999999999999999999999999 9999999999999999999876553
No 24
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...
Probab=100.00 E-value=7.8e-73 Score=584.87 Aligned_cols=357 Identities=20% Similarity=0.332 Sum_probs=328.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccCh----HHHHHHHHHHhhhhhhCCCc
Q 013920 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP----AAKLLVLAGKAQQEEIGDGA 100 (434)
Q Consensus 25 ~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGt 100 (434)
++++..|+.||..|+++++|||||+||+|||+++.|+++|||||+||+++|+++|| +|+|+++++++|++++||||
T Consensus 9 ~~ar~~~i~~~~~la~~vkttLGPkG~~kmi~~~~G~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~~qd~e~GDGT 88 (547)
T 1kp8_A 9 NDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGT 88 (547)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHccccChhhhHHHHHHHHHHHhhccccCCCc
Confidence 69999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhcccccCchhhH
Q 013920 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (434)
Q Consensus 101 ts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (434)
||+++||++||+++.+++.+|+||..|++||+.|++.+++.|+++++|+ .+++.|.++++++++ ++++|
T Consensus 89 TtvvVLA~~Ll~ea~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v------~~~e~l~~vA~iS~~-----~~~~i 157 (547)
T 1kp8_A 89 TTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPC------SDSKAIAQVGTISAN-----SDETV 157 (547)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCBCC------CSHHHHHHHHHHHTT-----SCHHH
T ss_pred chhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCC------CCHHHHHHHHHHhcc-----chhHH
Confidence 9999999999999999999999999999999999999999999999873 368899999998875 36899
Q ss_pred HHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccc-eeeeeEEEeecCC---------CCcceeecceEEEEeeeccc
Q 013920 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNS-TIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDT 250 (434)
Q Consensus 181 s~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS-~~i~G~v~~~~~~---------~~~~~~~n~kIlll~~~l~~ 250 (434)
++|+++|+.++++++ .|+|+ +|+++++| ++++|++|++++. .|++.++||+|+++++++
T Consensus 158 ~~liadAv~~V~~dg-------~I~Ve--~G~~~~ds~~lveG~~fdkg~~~p~~vt~~~~m~~~lenp~Ill~d~~I-- 226 (547)
T 1kp8_A 158 GKLIAEAMDKVGKEG-------VITVE--DGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKI-- 226 (547)
T ss_dssp HHHHHHHHHHHCTTS-------EEEEE--CCSSSSCEEEEESCEEESCCBSSTTCCSBTTTTBEEEESCEEECEESEE--
T ss_pred HHHHHHHHHHhCcCC-------cEEEE--eCCccccccEEEecEEEecCccccccccCcccCceEecCceEEEEcCcC--
Confidence 999999999997653 36665 89999999 9999999999862 377889999999999975
Q ss_pred cccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHC------CeEEEE-----eCC
Q 013920 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERY------KLMVLK-----ISS 319 (434)
Q Consensus 251 ~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~------~I~~v~-----~v~ 319 (434)
++++++. ++++++.+.|+||||++++|++.+++||..+ +|++|+ +++
T Consensus 227 -----------s~~~~l~-----------~~le~i~~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~r 284 (547)
T 1kp8_A 227 -----------SNIREML-----------PVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRR 284 (547)
T ss_dssp -----------CCGGGTH-----------HHHHHHHGGGCCEEEEESEECHHHHHHHHHHGGGTSSCEEEEECSSCHHHH
T ss_pred -----------CCHHHHH-----------HHHHHHHhcCCCEEEECCCcCHHHHHHHHhcccccceeEEEEecccccccc
Confidence 3555543 4678899999999999999999999999984 678998 677
Q ss_pred HHHHHHHHHHhCCeeccc-----CCCCCCCCCcceeeEEEEEEcceEEEEEeecCCCC----------------------
Q 013920 320 KFELRRFCRTTGAVAMLK-----LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGN---------------------- 372 (434)
Q Consensus 320 ~~~L~~ia~~tGa~ii~~-----~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~---------------------- 372 (434)
+++|+|||++|||+++++ +++++++++|+|+.|++ +.+++++|++|+. +
T Consensus 285 k~~le~ia~~tG~~ii~~~~g~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~-~~~i~~r~~~i~~~~~~~~s~~~ 360 (547)
T 1kp8_A 285 KAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVI---NKDTTTIIDGVGE-EAAIQGRVAQIRQQIEEATSDYD 360 (547)
T ss_dssp HHHHHHHHHHHTCCCEEGGGTCCSTTCCTTTSEEEEEEEE---CSSCEEEEEECCC-HHHHHHHHHHHHHHHHSCCSHHH
T ss_pred HHHHHHHHHHhCCeEecccccCCcccCCHHHCCceeEEEE---ccceEEEEcCCCC-HHHHHHHHHHHHHHhhcccchhh
Confidence 899999999999999996 89999999999999977 4689999999973 3
Q ss_pred -------------ceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcCCeEEeCCCHHHHHHHHHHHHhhh
Q 013920 373 -------------SVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSF 430 (434)
Q Consensus 373 -------------~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGgG~~E~~l~~~L~~~a~ 430 (434)
++|||+|||+|+.+++|.||+++||++++|+++++| +|||||++|++++.+|++++.
T Consensus 361 ~ekl~erlakl~~~~~tI~vrG~te~~l~E~kr~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~~~ 430 (547)
T 1kp8_A 361 REKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG-VVAGGGVALIRVASKLADLRG 430 (547)
T ss_dssp HHHHHHHHHHHHHCEEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHhcCCeEEEEEcCCcHhHHHHHHHHHHHHHHHHHHhccCC-EEeCCcHHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999999999 999999999999999998864
No 25
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1
Probab=100.00 E-value=3.6e-73 Score=587.79 Aligned_cols=358 Identities=21% Similarity=0.306 Sum_probs=298.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccCh----HHHHHHHHHHhhhhhhCCCc
Q 013920 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP----AAKLLVLAGKAQQEEIGDGA 100 (434)
Q Consensus 25 ~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGt 100 (434)
++++..|+.||..|+++++|||||+||+|||+++.|+++|||||+|||++|+++|| +|+|+++++++|++++||||
T Consensus 10 ~~ar~~~i~~~~~la~~vkttLGPkG~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~en~~Akll~e~a~~qd~e~GDGT 89 (545)
T 1iok_A 10 SDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTNDEAGDGT 89 (545)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHGGGGCSTHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEECCCCCeEEeCCHHHHHHHhccCChhhHHHHHHHHHHHHhhccccCCCc
Confidence 69999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhcccccCchhhH
Q 013920 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (434)
Q Consensus 101 ts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (434)
||+++||++||+++.+++.+|+||..|++||+.|++.+++.|++++.|. .+++.|.++++++++ ++++|
T Consensus 90 TtvvVLA~~Ll~ea~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v------~~~e~l~~va~iS~~-----~~~~i 158 (545)
T 1iok_A 90 TTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARPV------NDSSEVAQVGTISAN-----GESFI 158 (545)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCBCC------CSTTTTTHHHHHTTT-----TCHHH
T ss_pred chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccC------CCHHHHHHHHHhhcC-----CchhH
Confidence 9999999999999999999999999999999999999999999999873 246778999988875 36899
Q ss_pred HHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccc-eeeeeEEEeecCC---------CCcceeecceEEEEeeeccc
Q 013920 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNS-TIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDT 250 (434)
Q Consensus 181 s~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS-~~i~G~v~~~~~~---------~~~~~~~n~kIlll~~~l~~ 250 (434)
++++++|+.++++++ .|+|. +|+++++| ++++|++|++++. .|++.++||+|++++++++
T Consensus 159 ~~li~dAv~~V~~~g-------~I~Ve--~G~~~~ds~~lveG~~~dkg~~~p~~vt~~~~m~~~~en~~Ill~d~~I~- 228 (545)
T 1iok_A 159 GQQIAEAMQRVGNEG-------VITVE--ENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLS- 228 (545)
T ss_dssp HHHHHHHHHHHCTTS-------CCCCE--ECSSSCCEEEEECCEECSCCCSCGGGCCCSSSSCEEEEEEEEEECSSCBC-
T ss_pred HHHHHHHHHHhccCC-------eEEEE--eCCccccceEEEecEEEecCccccccccCcccCceeecCCeEEEEcCCcC-
Confidence 999999999998653 25555 79999999 9999999999863 3778899999999999764
Q ss_pred cccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHC------CeEEEE-----eCC
Q 013920 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERY------KLMVLK-----ISS 319 (434)
Q Consensus 251 ~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~------~I~~v~-----~v~ 319 (434)
+++++. ++++++.+.|+||||++++|++.+++||..+ +|++|+ +++
T Consensus 229 ------------~~~~l~-----------~~le~i~~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~~ 285 (545)
T 1iok_A 229 ------------SLQPMV-----------PLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRR 285 (545)
T ss_dssp ------------CCCC----------------------CCCCEEEESCBC-----------------CEEEECSCCTTHH
T ss_pred ------------CHHHHH-----------HHHHHHHhcCCCEEEECCCcCHHHHHHHHHccccccceeEEEecchhhhcc
Confidence 333433 4677889999999999999999999999985 568888 778
Q ss_pred HHHHHHHHHHhCCeeccc-----CCCCCCCCCcceeeEEEEEEcceEEEEEeecCC------------------------
Q 013920 320 KFELRRFCRTTGAVAMLK-----LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGG------------------------ 370 (434)
Q Consensus 320 ~~~L~~ia~~tGa~ii~~-----~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~------------------------ 370 (434)
+++|+|||++|||+++++ +++++++++|+|+.|++. .+++++|++|+.
T Consensus 286 ~~~le~ia~~tGa~ii~~~~~~~l~~~~~~~LG~a~~v~~~---~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ 362 (545)
T 1iok_A 286 KAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSIN---KDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDR 362 (545)
T ss_dssp HHHHHHHHHHHTC---------------CTTSEEEEEEEEC---SSCEEEESCCCCHHHHHHHHHHHHHHHTTCCCSSHH
T ss_pred HHHHHHHHHhcCCeeecccccCCcccCCHHHcCcCcEEEEe---cCEEEEEeCCCCHHHHHHHHHHHHHHHhccCchhhH
Confidence 999999999999999997 999999999999999774 689999999863
Q ss_pred ----------CCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcCCeEEeCCCHHHHHHHHHHHHhhh
Q 013920 371 ----------GNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSF 430 (434)
Q Consensus 371 ----------~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGgG~~E~~l~~~L~~~a~ 430 (434)
.+++|||+|||+|+.+++|.||+++||++++|+++++| +|||||++|++++.+|++++.
T Consensus 363 ekl~erlakl~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~~~ 431 (545)
T 1iok_A 363 EKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEG-IVVGGGVALVQGAKVLEGLSG 431 (545)
T ss_dssp HHHHHHHHTTSSCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHHHGGGGGSCCC
T ss_pred HHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCchHHHHHHHHHHHHHhc
Confidence 13789999999999999999999999999999999999 999999999999999998865
No 26
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A
Probab=100.00 E-value=4.6e-72 Score=577.64 Aligned_cols=357 Identities=22% Similarity=0.278 Sum_probs=264.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChH----HHHHHHHHHhhhhhhCCCc
Q 013920 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPA----AKLLVLAGKAQQEEIGDGA 100 (434)
Q Consensus 25 ~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~----a~ll~~~~~~~~~~~GDGt 100 (434)
++++..|+.||..|+++++|||||+||+|||+++.|+++|||||+|||++|+++||+ |||+++++++|++++||||
T Consensus 9 ~~ar~~~~~~~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hp~~n~gAkll~e~a~~qd~e~GDGT 88 (546)
T 3rtk_A 9 EEARRGLERGLNALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGT 88 (546)
T ss_dssp ----------------------------------------------------CCCHHHHHHHHHHHHHHTSCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEECcHHHHHHHccCCChhhhHHHHHHHHHHHhhhhhhCCCc
Confidence 699999999999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhcccccCchhhH
Q 013920 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (434)
Q Consensus 101 ts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (434)
||+++||++||+++.+++.+|+||..|++||+.|.+.++++|+++++|. .+++.|.++++++++ ++++
T Consensus 89 TtvvVLAgeLL~ea~~li~~GihP~~I~~G~~~A~~~a~e~L~~~s~~v------~~~e~L~~vA~iS~~------~~~i 156 (546)
T 3rtk_A 89 TTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETLLKGAKEV------ETKEQIAATAAISAG------DQSI 156 (546)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTCBCC------CSHHHHHHHHHHHHT------CHHH
T ss_pred chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccC------CChHHHHhHeEEeCC------chHH
Confidence 9999999999999999999999999999999999999999999998763 368899999998875 4689
Q ss_pred HHHHHHHHHHhCCCCCCCccccceEEEEcCCCCcccceeeeeEEEeecCC---------CCcceeecceEEEEeeecccc
Q 013920 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDTS 251 (434)
Q Consensus 181 s~Lv~~ai~~v~~~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~---------~~~~~~~n~kIlll~~~l~~~ 251 (434)
++++++|+.++++++ .|+|.+.. +...+|++++|++|++++. .|++.++||+|+++++++
T Consensus 157 ~~liadAv~~V~~dg-------vI~Ve~~~-~~~~ds~lveGm~fdkg~~sp~~vt~~e~m~~~len~kIll~d~kI--- 225 (546)
T 3rtk_A 157 GDLIAEAMDKVGNEG-------VITVEESN-TFGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKV--- 225 (546)
T ss_dssp HHHHHHHHHHSCTTS-------EEEEECCS-SSSCEEEEECEEEESCCBSSGGGCSBTTTTBEEEESCEEEEBSSEE---
T ss_pred HHHHHHHHHHhccCC-------ceEEEecC-CcccceEEeeeEEEcCCccCcccccCcccCeeEecccEEEEECCcc---
Confidence 999999999997653 47777644 4557899999999999852 578999999999999864
Q ss_pred ccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCC------eEEEEeCC-----H
Q 013920 252 ATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYK------LMVLKISS-----K 320 (434)
Q Consensus 252 ~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~------I~~v~~v~-----~ 320 (434)
++++++. ++++++.+.|+||||++++|++.+++||..++ +++|+.+. +
T Consensus 226 ----------s~~~~l~-----------~~le~I~~~g~~lvIi~~~I~~~Al~~L~~n~lrg~~~v~aVk~~~~~~~rk 284 (546)
T 3rtk_A 226 ----------STVKDLL-----------PLLEKVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRK 284 (546)
T ss_dssp ----------CCSTTTH-----------HHHHHHHTTTCCEEEEESEECHHHHHHHHHHHHHSSCCEEEEECSSCHHHHH
T ss_pred ----------CCHHHHH-----------HHHHHHHhcCCCEEEEcCCCCHHHHHHHHHhCCCCceEEEEeccccccccch
Confidence 4555554 45788999999999999999999999998653 57777554 7
Q ss_pred HHHHHHHHHhCCeecc-----cCCCCCCCCCcceeeEEEEEEcceEEEEEeecCCC------------------------
Q 013920 321 FELRRFCRTTGAVAML-----KLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGG------------------------ 371 (434)
Q Consensus 321 ~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~------------------------ 371 (434)
.+|+|||++|||++++ +++++++++||+|+.|+ ++.+++++|++|+..
T Consensus 285 ~~le~ia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~---i~~d~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~e 361 (546)
T 3rtk_A 285 AMLQDMAILTGGQVISEEVGLTLENADLSLLGKARKVV---VTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDSDYDRE 361 (546)
T ss_dssp HHHHHHHHHHTCCCBCSSSSCCSTTCCTTTSEEEEEEE---ECSSCEEEEEECSCHHHHHHHHHHHHHHHHTCSCHHHHH
T ss_pred hhHHHHHHHhCCEEeeccccCccccCCHhhCCeeEEEE---EcCCeEEEEcCCCCHHHHHHHHHHHHHHHhhccchhhHH
Confidence 8999999999999999 58999999999999997 477899999998630
Q ss_pred ----------CceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhhcCCeEEeCCCHHHHHHHHHHHHhh
Q 013920 372 ----------NSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFS 429 (434)
Q Consensus 372 ----------~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGgG~~E~~l~~~L~~~a 429 (434)
+..|||+|||+|+.+++|.||+++||++++|+++++| +|||||++|++++.+|++++
T Consensus 362 kl~erlakl~g~~atI~vrG~te~~l~E~er~l~DAl~a~r~av~~g-iVpGGGa~e~~~s~~L~~~~ 428 (546)
T 3rtk_A 362 KLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEG-IVAGGGVTLLQAAPTLDELK 428 (546)
T ss_dssp HHHHHHHHHHHCEEEEECCCCSSTHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHTTGGGSTTSC
T ss_pred HHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHhCC-cccCCcHHHHHHHHHHHHhc
Confidence 2389999999999999999999999999999999999 99999999999999999876
No 27
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=100.00 E-value=6.1e-40 Score=292.59 Aligned_cols=171 Identities=17% Similarity=0.366 Sum_probs=147.7
Q ss_pred cccceeeeeEEEeecCC--CCcceeecceEEEEeeeccccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCe
Q 013920 214 LHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAE 291 (434)
Q Consensus 214 ~~dS~~i~G~v~~~~~~--~~~~~~~n~kIlll~~~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~ 291 (434)
++||++++|++|++.+. +||++++||||++++|+|++++++.++++.++++++++.+.++|++++++++++|.+.|+|
T Consensus 1 ~~dS~lv~Gvvl~k~~~~~~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~n 80 (178)
T 1gml_A 1 MEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPD 80 (178)
T ss_dssp --CCSEEEEEEESCCCSSTTSCCEEESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred CCCcEEEEEEEEeccccCCCCCcccccceEEEEecccCCccccCccEEEECCHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 36899999999999875 5999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcc-eeeEEEEEEcceEEEEEeecCC
Q 013920 292 VIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGY-VDSVSVEEIGGARVTIVRNEGG 370 (434)
Q Consensus 292 lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~~~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~ 370 (434)
|||++++|+|.+++||.++||++++++++++|+|||++|||++++++++++++++|+ |+.|+++++|+++|++|++|+.
T Consensus 81 VVl~~k~I~d~a~~~l~k~gI~~vr~v~~~dleria~atGa~iv~~~~~l~~~~LG~~~~~v~~~~ig~~~~~~~~gc~~ 160 (178)
T 1gml_A 81 VVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKD 160 (178)
T ss_dssp EEEESSCBCHHHHHHHHHTTCEEECCCCHHHHHHHHHHHCCCEESCGGGCCGGGSBCCEEEEEEEEETTEEEEEEEEESS
T ss_pred EEEECCcccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCeEeCChhhCChhhhCCcccEEEEEEECCeEEEEEECCCC
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999985
Q ss_pred CCceEEEEEecCCHh
Q 013920 371 GNSVSTVVLRGSTDS 385 (434)
Q Consensus 371 ~~~~~TIllrG~t~~ 385 (434)
+++|||+|||+++.
T Consensus 161 -~~~~TIllRG~~~~ 174 (178)
T 1gml_A 161 -PKACTILLRGASHH 174 (178)
T ss_dssp -TTSCEEEEEC----
T ss_pred -CCEEEEEEECCCcc
Confidence 89999999999975
No 28
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A
Probab=100.00 E-value=8.2e-35 Score=254.32 Aligned_cols=151 Identities=21% Similarity=0.409 Sum_probs=146.6
Q ss_pred eeeEEEeecCC--CCcceeecceEEEEeeeccccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCC
Q 013920 220 VRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGA 297 (434)
Q Consensus 220 i~G~v~~~~~~--~~~~~~~n~kIlll~~~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~ 297 (434)
++|++|++.+. +||++++||||++++|+|++++++.++++.++++++++.+.++|++++++++++|.+.|+||||+++
T Consensus 1 i~Gvv~~k~~~~~~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl~~k 80 (159)
T 1ass_A 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQK 80 (159)
T ss_dssp CCCEEESCCCSCTTSCSEEEEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEESS
T ss_pred CceEEEecccCCCCCCcCcCCccEEEEecCcCCcccccceeEEECCHHHHHHHHHHHHHHHHHHhhhhhhCCCeEEEECC
Confidence 57999999986 4999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcceeeEEEEEEcceEEEEEeecCC
Q 013920 298 AVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGG 370 (434)
Q Consensus 298 ~I~~~al~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~ 370 (434)
+|+|.+++||.++||++++++++++|+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|++
T Consensus 81 ~I~d~a~~~l~k~gI~~v~~v~~~dleria~atGa~iv~~~~~l~~~~LG~~~~v~e~~ig~~~~~~~~g~~~ 153 (159)
T 1ass_A 81 GIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKN 153 (159)
T ss_dssp CBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHTCCCBSSTTSCCTTSCEEEEEEEEEEETTEEEEEEESCC-
T ss_pred ccCHHHHHHHHHCCCEEEccCCHHHHHHHHHHhCCeeeCccccCCcccCccceEEEEEEECCeEEEEEECCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999974
No 29
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis}
Probab=99.10 E-value=1.9e-09 Score=94.17 Aligned_cols=114 Identities=19% Similarity=0.183 Sum_probs=94.2
Q ss_pred ceeeeeEEEeecCC---------CCcceeecceEEEEeeeccccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHH
Q 013920 217 STIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAE 287 (434)
Q Consensus 217 S~~i~G~v~~~~~~---------~~~~~~~n~kIlll~~~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~ 287 (434)
.++++||.|+|+|. .|...++||.|++.+.. +++..++.++ ++.+.+
T Consensus 2 levvEGmqfDrGYiSpyfvtd~~~m~~~le~p~ILitdkK-------------Is~i~~ilP~-----------LE~~~~ 57 (194)
T 3m6c_A 2 LEFTEGIGFDKGFLSAYFVTDFDNQQAVLEDALILLHQDK-------------ISSLPDLLPL-----------LEKVAG 57 (194)
T ss_dssp CCCCSSEEESCCBSCGGGCSBTTTTBEEEEEEEEEEBSSE-------------ECCHHHHHHH-----------HHHHHH
T ss_pred eEEEeeeEccCcccCceeeeccCCcEEEEecceEEEEcCc-------------cCCHHHHHHH-----------HHHHHH
Confidence 36899999999862 46778999999998864 5688888875 457777
Q ss_pred cCCeEEEeCCCcCHHHHHHHHH------CCeEEEEeCC-----HHHHHHHHHHhCCeeccc-----CCCCCCCCCcceee
Q 013920 288 SGAEVIVSGAAVGEMALHFCER------YKLMVLKISS-----KFELRRFCRTTGAVAMLK-----LCQPNPDDLGYVDS 351 (434)
Q Consensus 288 ~~~~lvl~~~~I~~~al~~l~~------~~I~~v~~v~-----~~~L~~ia~~tGa~ii~~-----~~~l~~~~lG~~~~ 351 (434)
.+-+++|++.+|+..|+..|.- -++++|+.+. +..|++||.+||+++++. +++.+.++||+|++
T Consensus 58 ~~kpLlIIAedvegeaLatLvvNklrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le~~~~~~LG~a~~ 137 (194)
T 3m6c_A 58 TGKPLLIVAEDVEGEALATLVVNAIRKTLKAVAVKGPYFGDRRKAFLEDLAVVTGGQVVNPDAGMVLREVGLEVLGSARR 137 (194)
T ss_dssp HTCCEEEEESEECHHHHHHHHHHHHHTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEE
T ss_pred hCCCeEEEecccccchhhhhhhhhccceEEEEEEECCCCchhhhhhhHhHHHhcCCeEEeccCCcccccCCHHHCCCccE
Confidence 7889999999999999998764 3578999985 677999999999999985 56677789999998
Q ss_pred EEE
Q 013920 352 VSV 354 (434)
Q Consensus 352 v~~ 354 (434)
+.+
T Consensus 138 v~v 140 (194)
T 3m6c_A 138 VVV 140 (194)
T ss_dssp EEE
T ss_pred EEE
Confidence 755
No 30
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1
Probab=99.09 E-value=5.8e-10 Score=92.98 Aligned_cols=110 Identities=18% Similarity=0.219 Sum_probs=90.5
Q ss_pred eEEEeecC---------CCCcceeecceEEEEeeeccccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeE
Q 013920 222 GMVLKSDA---------VGSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEV 292 (434)
Q Consensus 222 G~v~~~~~---------~~~~~~~~n~kIlll~~~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~l 292 (434)
||.|+|++ ..|...++||.|++.+.. +++.+++.++ ++++.+.+.++
T Consensus 1 GmqfDrGYlSpYfvtd~e~m~~~le~p~ILitdkK-------------Is~i~~llP~-----------LE~v~~~~~pL 56 (145)
T 1srv_A 1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKK-------------VSNVRELLPI-----------LEQVAQTGKPL 56 (145)
T ss_dssp CEEESCCBSCGGGCSBTTTTBEEEEEEEEEEESSE-------------ECCHHHHHHH-----------HHHHHTTTCCE
T ss_pred CccccCCccCceeecCccccEEEeeccEEEEeccc-------------ccCHHHHHHH-----------HHHHHHHCCCE
Confidence 78888876 247778899999999864 5788888875 55777888899
Q ss_pred EEeCCCcCHHHHHHHHHC------CeEEEEeCC-----HHHHHHHHHHhCCeeccc-----CCCCCCCCCcceeeEEEE
Q 013920 293 IVSGAAVGEMALHFCERY------KLMVLKISS-----KFELRRFCRTTGAVAMLK-----LCQPNPDDLGYVDSVSVE 355 (434)
Q Consensus 293 vl~~~~I~~~al~~l~~~------~I~~v~~v~-----~~~L~~ia~~tGa~ii~~-----~~~l~~~~lG~~~~v~~~ 355 (434)
+|++.+|+..|+..|.-| ++++|+.+. +..|++||.+||+++++. +++.+.+++|+|+++.+.
T Consensus 57 lIIAedvegeaLatLvvNklrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le~~~~~~LG~a~~v~vt 135 (145)
T 1srv_A 57 LIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRIT 135 (145)
T ss_dssp EEEESEECHHHHHHHHHHHHTTSCCEEEEECCSSHHHHHHHHHHHHHHHTCCEECTTTTCCGGGCCGGGCEEEEEEEEC
T ss_pred EEEecccchhhhhhhhhhhhcccceEEEEeCCCcchhhHHHHHHHHHHhCCEEEccccCCccccCCHhHCCccCEEEEc
Confidence 999999999999988643 578999884 778999999999999975 455567789999998764
No 31
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A
Probab=99.02 E-value=1.1e-08 Score=89.58 Aligned_cols=110 Identities=19% Similarity=0.246 Sum_probs=91.1
Q ss_pred eeEEEeecCC---------CCcceeecceEEEEeeeccccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCe
Q 013920 221 RGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAE 291 (434)
Q Consensus 221 ~G~v~~~~~~---------~~~~~~~n~kIlll~~~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~ 291 (434)
+||.|+|+|. .|...++||.||+.+-. +++..++.++ ++.+.+.+-+
T Consensus 13 ~~~qfDrGYiSPYfvtd~e~m~~~le~p~ILitdkK-------------Is~i~~ilP~-----------LE~v~~~~rp 68 (201)
T 3osx_A 13 EGMQFDRGYLSPYFINKPESGSVELENPYILLVDKK-------------ISNIRELLPV-----------LEGVAKASKP 68 (201)
T ss_dssp CCEEESCCBSCGGGCSBTTTTBEEEESCEEEEEEEE-------------ECCHHHHHHH-----------HHHHHTSSCC
T ss_pred cccEecCccCChheeecccCCEEEecCCeEEEEcCc-------------cCCHHHHHHH-----------HHHHHHhCCC
Confidence 4999998862 46778999999999875 5688888865 5577888889
Q ss_pred EEEeCCCcCHHHHHHHHH------CCeEEEEeCC-----HHHHHHHHHHhCCeeccc-----CCCCCCCCCcceeeEEE
Q 013920 292 VIVSGAAVGEMALHFCER------YKLMVLKISS-----KFELRRFCRTTGAVAMLK-----LCQPNPDDLGYVDSVSV 354 (434)
Q Consensus 292 lvl~~~~I~~~al~~l~~------~~I~~v~~v~-----~~~L~~ia~~tGa~ii~~-----~~~l~~~~lG~~~~v~~ 354 (434)
|+|++.+|+..|+..|.- -++++|+.+. +..|++||.+||+++++. +++.+.++||+|++|.+
T Consensus 69 LlIIAEDvegEALatLvvNklrg~l~v~AVKAPgFGdrRk~~L~DIAilTGg~visee~g~~Le~~~~~~LG~a~~V~v 147 (201)
T 3osx_A 69 LVIIAEDVEGEALATLVVNNMRGIVKVASVKAPGFGDRRKAMLQDIATLTNGTVISEEIGLELEKATLEDLGQAKRVVI 147 (201)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHTSCCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEE
T ss_pred eEEEeccccchhhhHHHHhhccceEEEEEEeCCCCccchhhhhHhHHHHhCCEEEecccCCccccCCHhhCCCccEEEE
Confidence 999999999999998764 3578999986 667999999999999985 45667788999998755
No 32
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1
Probab=77.09 E-value=7.2 Score=31.13 Aligned_cols=51 Identities=10% Similarity=0.173 Sum_probs=38.6
Q ss_pred HHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCe
Q 013920 282 IKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAV 333 (434)
Q Consensus 282 v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 333 (434)
.+.|.+.++++|++. .|.+.+...|.++||-++.......-+.|.....+.
T Consensus 58 ~~~l~~~gv~~vi~~-~iG~~a~~~L~~~GI~v~~~~~~~i~eal~~~~~g~ 108 (124)
T 1eo1_A 58 AQIIANNGVKAVIAS-SPGPNAFEVLNELGIKIYRATGTSVEENLKLFTEGN 108 (124)
T ss_dssp HHHHHHTTCCEEEEC-CSSHHHHHHHHHHTCEEEECCSCCHHHHHHHHHTTC
T ss_pred HHHHHHCCCCEEEEC-CcCHHHHHHHHHCCCEEEEcCCCCHHHHHHHHHhCC
Confidence 456778899999999 499999999999999999865543344445444443
No 33
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A
Probab=74.72 E-value=6.2 Score=32.30 Aligned_cols=52 Identities=21% Similarity=0.194 Sum_probs=39.6
Q ss_pred HHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCe
Q 013920 281 LIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAV 333 (434)
Q Consensus 281 ~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 333 (434)
..+.|.+.++++||+. .|.+.+...|.++||-++.......-+.|.....+.
T Consensus 68 ~a~~L~~~gv~vVI~g-~IG~~a~~~L~~~GI~v~~~~~g~i~eal~~~~~G~ 119 (136)
T 1o13_A 68 VPNFVKEKGAELVIVR-GIGRRAIAAFEAMGVKVIKGASGTVEEVVNQYLSGQ 119 (136)
T ss_dssp HHHHHHHTTCSEEECS-CCCHHHHHHHHHTTCEEECSCCSBHHHHHHHHHTTC
T ss_pred HHHHHHHCCCCEEEEC-CCCHHHHHHHHHCCCEEEecCCCCHHHHHHHHHhCC
Confidence 3556777899999998 699999999999999999876544444455554443
No 34
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=72.64 E-value=7.9 Score=30.72 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=39.9
Q ss_pred HHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCe
Q 013920 280 GLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAV 333 (434)
Q Consensus 280 ~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 333 (434)
...+.|.+.++++||+. .|.+.+...|.++||-++.......-+.|.....+.
T Consensus 54 ~~~~~L~~~gv~~vi~~-~iG~~a~~~L~~~GI~v~~~~~~~v~eal~~~~~g~ 106 (121)
T 2yx6_A 54 DLPNFIKDHGAKIVLTY-GIGRRAIEYFNSLGISVVTGVYGRISDVIKAFIGGK 106 (121)
T ss_dssp HHHHHHHHTTCCEEECS-BCCHHHHHHHHHTTCEEECSBCSBHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCEEEEC-CCCHhHHHHHHHCCCEEEECCCCCHHHHHHHHHcCC
Confidence 34566777899999998 699999999999999999865544444455544443
No 35
>2wfb_A Putative uncharacterized protein ORP; mixed molybdenum-copper sulphide cluster, alpha and beta protein, biosynthetic protein; 2.00A {Desulfovibrio gigas}
Probab=71.03 E-value=8.1 Score=30.59 Aligned_cols=51 Identities=22% Similarity=0.173 Sum_probs=38.5
Q ss_pred HHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCH-HHHHHHHHHhCC
Q 013920 281 LIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSK-FELRRFCRTTGA 332 (434)
Q Consensus 281 ~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~-~~L~~ia~~tGa 332 (434)
..+.|.+.++++|+|. .|.+.+...|.++||-++..... ..-+.|.....+
T Consensus 59 ~~~~l~~~gv~~vi~~-~iG~~a~~~L~~~GI~v~~~~~g~~i~eal~~~~~g 110 (120)
T 2wfb_A 59 AAQVLAKSGAGVLLTG-YVGPKAFQALQAAGIKVGQDLEGLTVRQAVQRFLDG 110 (120)
T ss_dssp HHHHHHHHTEEEEECS-CCCHHHHHHHHHTTCEEECCCTTSBHHHHHHHHHTT
T ss_pred HHHHHHHCCCCEEEEC-CCCHhHHHHHHHCCCEEEEcCCCCcHHHHHHHHHcC
Confidence 4556677899999998 59999999999999999987654 334444444444
No 36
>1rdu_A Conserved hypothetical protein; atnos, candid, structural genomics, joint center for structu genomics, JCSG, protein structure initiative; NMR {Thermotoga maritima} SCOP: c.55.5.1
Probab=66.43 E-value=9.2 Score=30.05 Aligned_cols=51 Identities=12% Similarity=0.173 Sum_probs=38.5
Q ss_pred HHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCe
Q 013920 282 IKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAV 333 (434)
Q Consensus 282 v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 333 (434)
.+.|.+.++++|++. .|.+.+...|.++||-++.......-+.|.....+.
T Consensus 55 ~~~l~~~gv~~vi~~-~iG~~a~~~L~~~GI~v~~~~~~~i~eal~~~~~g~ 105 (116)
T 1rdu_A 55 VQSLVSKGVEYLIAS-NVGRNAFETLKAAGVKVYRFEGGTVQEAIDAFSEGR 105 (116)
T ss_dssp HHHHHTTTCCEEECS-SCCSSCHHHHHTTTCEEECCCSCBHHHHHHHHHTTC
T ss_pred HHHHHHcCCCEEEEC-CCCHhHHHHHHHCCCEEEECCCCCHHHHHHHHHhCC
Confidence 456667899999998 599999999999999999865544444455545443
No 37
>2re2_A Uncharacterized protein TA1041; dinitrogenase iron-molybdenum cofactor, structural genomics, center for structural genomics; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728}
Probab=58.54 E-value=18 Score=29.42 Aligned_cols=50 Identities=16% Similarity=0.255 Sum_probs=37.2
Q ss_pred HHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCC
Q 013920 281 LIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGA 332 (434)
Q Consensus 281 ~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia~~tGa 332 (434)
..+.|.+.++++||+. +|.+.+...|.+ ||-++.......-+.+.....+
T Consensus 71 ~~~~L~~~gv~~VI~g-~iG~~a~~~L~~-GI~v~~~~~~~veeal~~~~~G 120 (136)
T 2re2_A 71 MLKSALDHGANALVLS-EIGSPGFNFIKN-KMDVYIVPEMPVADALKLILEG 120 (136)
T ss_dssp HHHHHHHTTCSEEEES-CCBHHHHHHHTT-TSEEEECCSCBHHHHHHHHHTT
T ss_pred HHHHHHHcCCCEEEEC-CCCHhHHHHHHC-CCEEEEcCCCCHHHHHHHHHhC
Confidence 3556677899999998 689999999999 9999987653333444444444
No 38
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=52.87 E-value=28 Score=25.53 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=36.8
Q ss_pred HHHHHHHHcCCeEEEeCCCcCHHHHH----HHHHCCeEEEEeCCHHHHHHHHHHhCC
Q 013920 280 GLIKAVAESGAEVIVSGAAVGEMALH----FCERYKLMVLKISSKFELRRFCRTTGA 332 (434)
Q Consensus 280 ~~v~~i~~~~~~lvl~~~~I~~~al~----~l~~~~I~~v~~v~~~~L~~ia~~tGa 332 (434)
+.++.|.+-.+.+|+.+.++++.... +|.++||.++.-.++.+| .+++|-
T Consensus 18 ~v~kai~~gkaklViiA~D~~~~~~~~i~~lc~~~~Ip~~~v~sk~eL---G~a~Gk 71 (82)
T 3v7e_A 18 QTVKALKRGSVKEVVVAKDADPILTSSVVSLAEDQGISVSMVESMKKL---GKACGI 71 (82)
T ss_dssp HHHHHHTTTCEEEEEEETTSCHHHHHHHHHHHHHHTCCEEEESCHHHH---HHHHTC
T ss_pred HHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHH---HHHhCC
Confidence 34556667789999999999986554 456789999888777665 455554
No 39
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=51.18 E-value=38 Score=26.90 Aligned_cols=49 Identities=18% Similarity=0.242 Sum_probs=37.5
Q ss_pred HHHHHHHHcCCeEEEeCCCcCHH-----HHHHHHHCCeEEEEeCCHHHHHHHHHHhC
Q 013920 280 GLIKAVAESGAEVIVSGAAVGEM-----ALHFCERYKLMVLKISSKFELRRFCRTTG 331 (434)
Q Consensus 280 ~~v~~i~~~~~~lvl~~~~I~~~-----al~~l~~~~I~~v~~v~~~~L~~ia~~tG 331 (434)
..++.|.+-.+.+||.+.++++. +..+|.++||..+...++.+|- +++|
T Consensus 27 ~v~kai~~gkakLViiA~D~~~~~~~~~l~~lc~~~~VP~~~v~sk~eLG---~a~g 80 (121)
T 2lbw_A 27 EVVKALRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIPSKQDLG---AAGA 80 (121)
T ss_dssp HHHHHHHHSCCCEEEECTTCSCTTHHHHHHHHHHHTCCCEEECCCHHHHH---HHHT
T ss_pred HHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHHHH---HHhC
Confidence 45667777889999999999984 3356788999988877776664 4556
No 40
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=50.13 E-value=36 Score=27.34 Aligned_cols=50 Identities=8% Similarity=0.272 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCeEEEeCCCcCH-----HHHHHHHHCCeEEEEeCCHHHHHHHHHHhCC
Q 013920 280 GLIKAVAESGAEVIVSGAAVGE-----MALHFCERYKLMVLKISSKFELRRFCRTTGA 332 (434)
Q Consensus 280 ~~v~~i~~~~~~lvl~~~~I~~-----~al~~l~~~~I~~v~~v~~~~L~~ia~~tGa 332 (434)
..++.|.+-.+.+|+.+.+.++ .+..+|.+++|.++..-++.+| .+++|-
T Consensus 31 ~v~Kai~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~sk~~L---G~a~G~ 85 (126)
T 2xzm_U 31 EVLRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPKRASL---GEYLGH 85 (126)
T ss_dssp HHHHHHHHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEESCSHHH---HHHHTC
T ss_pred HHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHH---HHHHCC
Confidence 3456677778999999999975 4556788899998876666655 555553
No 41
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=47.56 E-value=33 Score=31.93 Aligned_cols=52 Identities=12% Similarity=0.072 Sum_probs=39.7
Q ss_pred HHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCC--------------------------HHHHHHHHHHhCCe
Q 013920 282 IKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISS--------------------------KFELRRFCRTTGAV 333 (434)
Q Consensus 282 v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~--------------------------~~~L~~ia~~tGa~ 333 (434)
+++|..++|+|||.....++...+.|.+.||.++-.-. .+.++.+++++|..
T Consensus 77 ~E~i~~l~PDlIi~~~~~~~~~~~~L~~~Gipvv~~~~~~~~~~~~~~~~pt~~~~~~~~~~~~~~~i~~lg~~lg~e 154 (326)
T 3psh_A 77 IESLLALKPDVVFVTNYAPSEMIKQISDVNIPVVAISLRTGEVGEKGKLNPTLTDEDKAYNDGLKQGIELIAEVFEKK 154 (326)
T ss_dssp HHHHHHTCCSEEEEETTCCHHHHHHHHTTTCCEEEECSCCSCGGGTTCSSCCCTTHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHccCCCEEEEeCCCChHHHHHHHHcCCCEEEEeccccccccccccccccccccchhhhhHHHHHHHHHHHcCCH
Confidence 45788899999998766677788889999987665321 35688899999864
No 42
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=46.30 E-value=43 Score=30.37 Aligned_cols=52 Identities=13% Similarity=0.150 Sum_probs=38.7
Q ss_pred HHHHHHcCCeEEEeCCCc-CHHHHHHHHHCCeEEEEeC---C----HHHHHHHHHHhCCe
Q 013920 282 IKAVAESGAEVIVSGAAV-GEMALHFCERYKLMVLKIS---S----KFELRRFCRTTGAV 333 (434)
Q Consensus 282 v~~i~~~~~~lvl~~~~I-~~~al~~l~~~~I~~v~~v---~----~~~L~~ia~~tGa~ 333 (434)
+++|..++|+|||..... ++...+.|.+.||.++-.. + .+.++.+++++|-.
T Consensus 52 ~E~i~~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~~~~~~~~~~~~~i~~lg~~~g~~ 111 (283)
T 2r79_A 52 AEGVLALRPDILIGTEEMGPPPVLKQLEGAGVRVETLSAKPDLEALESNLKKLGDWLGVP 111 (283)
T ss_dssp HHHHHTTCCSEEEECTTCCCHHHHHHHHHTTCCEEECCCCSSHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhcCCCEEEEeCccCcHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHHHHhCCH
Confidence 457888999999987653 5677888999998666431 2 45688888888863
No 43
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=46.24 E-value=45 Score=29.61 Aligned_cols=52 Identities=4% Similarity=0.110 Sum_probs=39.0
Q ss_pred HHHHHHcCCeEEEeCCCcC-HHHHHHHHHCCeEEEEeC---C----HHHHHHHHHHhCCe
Q 013920 282 IKAVAESGAEVIVSGAAVG-EMALHFCERYKLMVLKIS---S----KFELRRFCRTTGAV 333 (434)
Q Consensus 282 v~~i~~~~~~lvl~~~~I~-~~al~~l~~~~I~~v~~v---~----~~~L~~ia~~tGa~ 333 (434)
+++|..++|||||...... +...+.|.+.||.++-.- + .+.++.+++++|..
T Consensus 52 ~E~i~~l~PDlIi~~~~~~~~~~~~~L~~~gipvv~~~~~~~~~~~~~~i~~lg~~~g~~ 111 (255)
T 3md9_A 52 AEGILAMKPTMLLVSELAQPSLVLTQIASSGVNVVTVPGQTTPESVAMKINAVATALHQT 111 (255)
T ss_dssp HHHHHTTCCSEEEEETTCSCHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHccCCCEEEEcCCcCchhHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCCH
Confidence 4578899999999877654 567788999998766432 2 35688899999964
No 44
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=45.66 E-value=22 Score=31.84 Aligned_cols=52 Identities=10% Similarity=0.113 Sum_probs=36.9
Q ss_pred HHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEE--eCC----HHHHHHHHHHhCCe
Q 013920 282 IKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLK--ISS----KFELRRFCRTTGAV 333 (434)
Q Consensus 282 v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~--~v~----~~~L~~ia~~tGa~ 333 (434)
+++|..++|||||.....++...+.|.+.||.++- .-+ .+.++.+++++|-.
T Consensus 53 ~E~i~~l~PDLIi~~~~~~~~~~~~L~~~gipvv~~~~~~~~~~~~~i~~lg~~~g~~ 110 (260)
T 2q8p_A 53 VEAVKKLKPTHVLSVSTIKDEMQPFYKQLNMKGYFYDFDSLKGMQKSITQLGDQFNRK 110 (260)
T ss_dssp HHHHHHTCCSEEEEEGGGHHHHHHHHHHHTSCCEEECCSSHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCCCEEEecCccCHHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHHHhCCh
Confidence 35778899999998766666777888888875433 222 34678888888863
No 45
>2qtd_A Uncharacterized protein MJ0327; ribonuclease H-like motif fold, iron-molybdenum cofactor, ST genomics; HET: MSE PG4; 1.70A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 2kla_A
Probab=45.29 E-value=43 Score=25.52 Aligned_cols=48 Identities=6% Similarity=0.082 Sum_probs=35.6
Q ss_pred HHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCC
Q 013920 283 KAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGA 332 (434)
Q Consensus 283 ~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia~~tGa 332 (434)
+.+.+.++++|+|. ++.+.+...|.++ |-++.......-+.|.....+
T Consensus 50 ~~l~~~gv~~vi~~-~iG~~a~~~L~~~-I~v~~~~~~~v~eal~~~~~g 97 (105)
T 2qtd_A 50 KSIVKENVNAIICK-NISEENYKKFSKK-IEIYHAEGDDVDKNISLFIEG 97 (105)
T ss_dssp HHHHHTCCSEEEES-CCCHHHHHHHHTT-CEEEECCSSCHHHHHHHHHTT
T ss_pred HHHHHCCCCEEEEC-CCCHHHHHHHHhc-cEEEECCCCCHHHHHHHHHcC
Confidence 45566899999997 6999999999999 999986554334444444433
No 46
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=44.27 E-value=49 Score=29.38 Aligned_cols=52 Identities=10% Similarity=0.146 Sum_probs=37.6
Q ss_pred HHHHHHcCCeEEEeCCC-cCHHHHHHHHHCCeEEEEe--C--C----HHHHHHHHHHhCCe
Q 013920 282 IKAVAESGAEVIVSGAA-VGEMALHFCERYKLMVLKI--S--S----KFELRRFCRTTGAV 333 (434)
Q Consensus 282 v~~i~~~~~~lvl~~~~-I~~~al~~l~~~~I~~v~~--v--~----~~~L~~ia~~tGa~ 333 (434)
+++|..++|||||.... .++...+.|.+.||.++-. . + .+.++.+++++|-.
T Consensus 52 ~E~i~~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~~~~~~~~~~~~~~i~~lg~~~g~~ 112 (256)
T 2r7a_A 52 SEGILSLRPDSVITWQDAGPQIVLDQLRAQKVNVVTLPRVPATLEQMYANIRQLAKTLQVP 112 (256)
T ss_dssp HHHHHTTCCSEEEEETTCSCHHHHHHHHHTTCEEEEECCCSCCHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHccCCCEEEEcCCCCCHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHHHhCCH
Confidence 45788899999998654 4677788899999865532 1 2 23588888888853
No 47
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A {Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E 1n4a_A* 1n4d_A
Probab=43.53 E-value=34 Score=30.29 Aligned_cols=51 Identities=10% Similarity=0.150 Sum_probs=35.3
Q ss_pred HHHHHHcCCeEEEeCC-CcCHHHHHHHHHCCeEEEEeC--C----HHHHHHHHHHhCC
Q 013920 282 IKAVAESGAEVIVSGA-AVGEMALHFCERYKLMVLKIS--S----KFELRRFCRTTGA 332 (434)
Q Consensus 282 v~~i~~~~~~lvl~~~-~I~~~al~~l~~~~I~~v~~v--~----~~~L~~ia~~tGa 332 (434)
+++|..++|||||... ..++...+.|.+.||.++-.- + .+.++.+++++|-
T Consensus 50 ~E~i~~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~~~~~~~~~~~~i~~lg~~lg~ 107 (245)
T 1n2z_A 50 LERIVALKPDLVIAWRGGNAERQVDQLASLGIKVMWVDATSIEQIANALRQLAPWSPQ 107 (245)
T ss_dssp HHHHHHTCCSEEEECTTTSCHHHHHHHHHHTCCEEECCCCSHHHHHHHHHHHGGGCSC
T ss_pred HHHHhccCCCEEEEeCCCCcHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHhCC
Confidence 3578889999999863 466778888999887666421 1 2446666666664
No 48
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=42.72 E-value=63 Score=24.56 Aligned_cols=51 Identities=22% Similarity=0.309 Sum_probs=38.4
Q ss_pred HHHHHHHHcCCeEEEeCCCcCHHHHH----HHHHCCeEEEEeCCHHHHHHHHHHhCCe
Q 013920 280 GLIKAVAESGAEVIVSGAAVGEMALH----FCERYKLMVLKISSKFELRRFCRTTGAV 333 (434)
Q Consensus 280 ~~v~~i~~~~~~lvl~~~~I~~~al~----~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 333 (434)
+..+.|.+-.+.+||.+.+.++.... +|..++|.++...++.+| ..++|-.
T Consensus 26 ~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~vp~~~~~s~~eL---G~A~Gk~ 80 (101)
T 3v7q_A 26 LVIKEIRNARAKLVLLTEDASSNTAKKVTDKCNYYKVPYKKVESRAVL---GRSIGKE 80 (101)
T ss_dssp HHHHHHHTTCCSEEEEETTSCHHHHHHHHHHHHHTTCCEEEESCHHHH---HHHTTSS
T ss_pred hhHHHHhcCceeEEEEeccccccchhhhcccccccCCCeeeechHHHH---HhhhCcc
Confidence 45566777789999999999986554 456789998888777665 6666654
No 49
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=41.83 E-value=35 Score=27.75 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=37.1
Q ss_pred HHHHHHHHHcCCeEEEeCCCcCHH-----HHHHHHHCCeEEEEeCCHHHHHHHHHHhCC
Q 013920 279 EGLIKAVAESGAEVIVSGAAVGEM-----ALHFCERYKLMVLKISSKFELRRFCRTTGA 332 (434)
Q Consensus 279 ~~~v~~i~~~~~~lvl~~~~I~~~-----al~~l~~~~I~~v~~v~~~~L~~ia~~tGa 332 (434)
+..++.|.+-.+.+|+.+.++++. ...+|.++||.++..-++.+| .+++|-
T Consensus 38 ~~v~kai~~gkakLViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eL---G~a~G~ 93 (134)
T 2ale_A 38 NEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVAL---GRACGV 93 (134)
T ss_dssp HHHHHHHHHTCEEEEEEETTCSSGGGGTHHHHHHHHHTCCEEEESCHHHH---HHHTTC
T ss_pred hHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHH---HHHhCC
Confidence 455667777789999999999885 445777889987777666554 555554
No 50
>2wi8_A Iron-uptake system-binding protein; bacillibactin and enterobactin binding, triscatecholate BIND protein, iron transport; 1.55A {Bacillus subtilis} PDB: 2why_A 2xuz_A* 2xv1_A* 2phz_A
Probab=41.06 E-value=47 Score=30.62 Aligned_cols=52 Identities=17% Similarity=0.146 Sum_probs=37.9
Q ss_pred HHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCC----HHHHHHHHHHhCCe
Q 013920 282 IKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISS----KFELRRFCRTTGAV 333 (434)
Q Consensus 282 v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~----~~~L~~ia~~tGa~ 333 (434)
+++|..++|||||.....++...+.|.+.+..++-... .+.++.+++++|-.
T Consensus 89 ~E~I~~l~PDLIi~~~~~~~~~~~~L~~~gp~v~~~~~~~~~~~~i~~lg~~lg~e 144 (311)
T 2wi8_A 89 IEKILEMKPDVILASTKFPEKTLQKISTAGTTIPVSHISSNWKENMMLLAQLTGKE 144 (311)
T ss_dssp HHHHHHHCCSEEEEETTSCHHHHHHHHTTSCEEEECCCGGGHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCCCEEEEcCccCHHHHHHHHhhCCEEEeeCCCcCHHHHHHHHHHHhCCH
Confidence 35778889999998766678888888888865543322 45688888888863
No 51
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=40.32 E-value=61 Score=24.63 Aligned_cols=51 Identities=20% Similarity=0.340 Sum_probs=37.8
Q ss_pred HHHHHHHHcCCeEEEeCCCcCHHHHH----HHHHCCeEEEEeCCHHHHHHHHHHhCCe
Q 013920 280 GLIKAVAESGAEVIVSGAAVGEMALH----FCERYKLMVLKISSKFELRRFCRTTGAV 333 (434)
Q Consensus 280 ~~v~~i~~~~~~lvl~~~~I~~~al~----~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 333 (434)
+..+.|.+-.+.+||.+.+.++.... +|..++|.++...++.+| ..++|-.
T Consensus 25 ~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~ip~~~~~s~~eL---G~a~Gk~ 79 (101)
T 3on1_A 25 QVVKAVQNGQVTLVILSSDAGIHTKKKLLDKCGSYQIPVKVVGNRQML---GRAIGKH 79 (101)
T ss_dssp HHHHHHHTTCCSEEEEETTSCHHHHHHHHHHHHHHTCCEEEESCHHHH---HHHTTSS
T ss_pred HHHHHHHcCCCcEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHHHH---HHHhCCc
Confidence 45566777789999999999986554 456789998887777665 5566653
No 52
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=39.07 E-value=93 Score=23.72 Aligned_cols=52 Identities=15% Similarity=0.255 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcCCeEEEeCCCcCHHHHH----HHHHCCeEEEE-eCCHHHHHHHHHHhCC
Q 013920 278 VEGLIKAVAESGAEVIVSGAAVGEMALH----FCERYKLMVLK-ISSKFELRRFCRTTGA 332 (434)
Q Consensus 278 ~~~~v~~i~~~~~~lvl~~~~I~~~al~----~l~~~~I~~v~-~v~~~~L~~ia~~tGa 332 (434)
.++..+.|.+-.+.+||.+.+.++.... ++..++|.++. ..++.+| ..++|-
T Consensus 27 ~~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~ip~~~~~~s~~eL---G~a~Gk 83 (104)
T 4a18_G 27 YKSTIKAIRNGTAKLVFISNNCPTVRKSEIEYYASLAQISIHHFVGSNVEL---GTACGK 83 (104)
T ss_dssp HHHHHHHHHHTCCCEEEECTTSCHHHHHHHHHHHHHHTCEEEECSSCHHHH---HHHTTC
T ss_pred HHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCcEEEecCCHHHH---HHHhCC
Confidence 3456677777889999999999985544 55678999996 6667665 666664
No 53
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=37.88 E-value=42 Score=31.62 Aligned_cols=52 Identities=12% Similarity=0.042 Sum_probs=34.7
Q ss_pred HHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeC---------C--HHHHHHHHHHhCCe
Q 013920 282 IKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKIS---------S--KFELRRFCRTTGAV 333 (434)
Q Consensus 282 v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v---------~--~~~L~~ia~~tGa~ 333 (434)
+++|..++|+|||....-.+.+.+.+.+.||.++-.- . .+.++.+++++|..
T Consensus 89 ~E~Ilal~PDLIi~~~~~~~~~~~~~~~~GiPvv~~~~~~~~~~~~~~~~~~i~~lG~~lG~e 151 (346)
T 2etv_A 89 LESLITLQPDVVFITYVDRXTAXDIQEXTGIPVVVLSYGNLGTFEDEDLFRSIELAGXILGRE 151 (346)
T ss_dssp HHHHHHHCCSEEEEESCCHHHHHHHHHHHTSCEEEECCCCTTCSCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCCCCEEEEeCCccchHHHHHHhcCCcEEEEecCccCcccHHHHHHHHHHHHHHcCCH
Confidence 4577788999999875434456667778777655321 1 45677888888753
No 54
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=35.98 E-value=56 Score=30.49 Aligned_cols=51 Identities=8% Similarity=0.038 Sum_probs=36.7
Q ss_pred HHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeC--C----HHHHHHHHHHhCCe
Q 013920 282 IKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKIS--S----KFELRRFCRTTGAV 333 (434)
Q Consensus 282 v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v--~----~~~L~~ia~~tGa~ 333 (434)
+++|..++|+|||.... .+...+.|.+.||.++-.- + .+.++.+++++|-.
T Consensus 109 ~E~i~al~PDLIi~~~~-~~~~~~~L~~~gipvv~~~~~~~~~~~~~i~~lg~~lg~e 165 (335)
T 4hn9_A 109 TEACVAATPDVVFLPMK-LKKTADTLESLGIKAVVVNPEDQSLLEECITLVGKITNNA 165 (335)
T ss_dssp HHHHHHTCCSEEEEEGG-GHHHHHHHHHTTCCEEEECCCSHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCCCEEEEeCc-chhHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHHcCCH
Confidence 45788899999998765 4666778888887665432 1 34577888888753
No 55
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=34.00 E-value=58 Score=25.71 Aligned_cols=50 Identities=22% Similarity=0.276 Sum_probs=36.1
Q ss_pred HHHHHHHHcCCeEEEeCCCcCHH-----HHHHHHHCCeEEEEeCCHHHHHHHHHHhCC
Q 013920 280 GLIKAVAESGAEVIVSGAAVGEM-----ALHFCERYKLMVLKISSKFELRRFCRTTGA 332 (434)
Q Consensus 280 ~~v~~i~~~~~~lvl~~~~I~~~-----al~~l~~~~I~~v~~v~~~~L~~ia~~tGa 332 (434)
+..+.|.+-.+.+|+.+.++++. ...+|.+++|.++...++.+| .+++|-
T Consensus 36 ~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eL---G~a~G~ 90 (120)
T 1xbi_A 36 EVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVASKQDL---GKAAGL 90 (120)
T ss_dssp HHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHHHTCCEEEESCHHHH---HHHTTC
T ss_pred HHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHhcCCCEEEeCCHHHH---HHHhCC
Confidence 44566777789999999999774 345677889988877777666 445554
No 56
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=33.65 E-value=69 Score=25.90 Aligned_cols=51 Identities=24% Similarity=0.315 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCeEEEeCCCcCHHHH-----HHHHHCCeEEEEeCCHHHHHHHHHHhCC
Q 013920 279 EGLIKAVAESGAEVIVSGAAVGEMAL-----HFCERYKLMVLKISSKFELRRFCRTTGA 332 (434)
Q Consensus 279 ~~~v~~i~~~~~~lvl~~~~I~~~al-----~~l~~~~I~~v~~v~~~~L~~ia~~tGa 332 (434)
++..+.|.+-.+.+||.+.++++.-. .+|.+++|.++...++.+| .+++|-
T Consensus 47 ~~v~kal~~gkaklViiA~D~~~~~~~~~l~~lc~~~~IP~~~v~sk~eL---G~a~G~ 102 (135)
T 2aif_A 47 NEATKALNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTPYVFVRSKVAL---GRACGV 102 (135)
T ss_dssp HHHHHHHHTTCEEEEEEETTCSCHHHHHHHHHHHHHTTCCEEEESCHHHH---HHHTTC
T ss_pred HHHHHHHHcCCCeEEEEecCCChHHHHhHHHHHHHhcCCcEEEECCHHHH---HHHhCC
Confidence 45566777778899999999988632 4667789998877777655 556664
No 57
>3tny_A YFIY (ABC transport system substrate-binding PROT; schizokinen, nutrient binding protein, ABC transporter, metal transport; HET: SKZ; 1.55A {Bacillus cereus}
Probab=31.71 E-value=36 Score=31.19 Aligned_cols=52 Identities=10% Similarity=0.129 Sum_probs=37.8
Q ss_pred HHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCC----HHHHHHHHHHhCCe
Q 013920 282 IKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISS----KFELRRFCRTTGAV 333 (434)
Q Consensus 282 v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~----~~~L~~ia~~tGa~ 333 (434)
+++|..++|||||.....++...+.+.+.++.++-... .+.++.+++++|-.
T Consensus 89 ~E~I~~l~PDLIi~~~~~~~~~~~~l~~i~p~v~~~~~~~~~~~~i~~lg~~~g~e 144 (303)
T 3tny_A 89 VETIASLKPDLIIGNKMRHEKVYEQLKAIAPTVFSETLRGEWKDNFKFYAKALNKE 144 (303)
T ss_dssp HHHHHHTCCSEEEEEHHHHGGGHHHHHTTSCEEEECCCTTCHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCCCEEEEeccchHHHHHHhhcCCcEEEeccCcccHHHHHHHHHHHhCch
Confidence 35788899999998766666666777777776665432 45688888888853
No 58
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=30.96 E-value=1.4e+02 Score=22.99 Aligned_cols=51 Identities=16% Similarity=0.202 Sum_probs=37.3
Q ss_pred HHHHHHHHHcCCeEEEeCCCcCHHHHH----HHHHCCeEEEEe-CCHHHHHHHHHHhCC
Q 013920 279 EGLIKAVAESGAEVIVSGAAVGEMALH----FCERYKLMVLKI-SSKFELRRFCRTTGA 332 (434)
Q Consensus 279 ~~~v~~i~~~~~~lvl~~~~I~~~al~----~l~~~~I~~v~~-v~~~~L~~ia~~tGa 332 (434)
++..+.|.+-.+.+||.+.+.++.... +|.+++|.++.. .++.+| ..++|-
T Consensus 27 ~~v~kai~~gka~lViiA~D~~~~~~~~l~~~c~~~~Vp~~~~~~sk~eL---G~a~G~ 82 (110)
T 3cpq_A 27 KRTIKFVKHGEGKLVVLAGNIPKDLEEDVKYYAKLSNIPVYQHKITSLEL---GAVCGK 82 (110)
T ss_dssp HHHHHHHHTTCCSEEEECTTCBHHHHHHHHHHHHHTTCCEEECCSCHHHH---HHHTTC
T ss_pred HHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCHHHH---HHHhCC
Confidence 455667777789999999999877665 456789988776 566665 556664
No 59
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=30.17 E-value=99 Score=24.08 Aligned_cols=51 Identities=14% Similarity=0.222 Sum_probs=36.7
Q ss_pred HHHHHHHHHcCCeEEEeCCCcCHHHH----HHHHHCCeEEEEe-CCHHHHHHHHHHhCC
Q 013920 279 EGLIKAVAESGAEVIVSGAAVGEMAL----HFCERYKLMVLKI-SSKFELRRFCRTTGA 332 (434)
Q Consensus 279 ~~~v~~i~~~~~~lvl~~~~I~~~al----~~l~~~~I~~v~~-v~~~~L~~ia~~tGa 332 (434)
++.++.|.+-.+.+||.+.+.++... +++..++|.++.- -++.+| .+++|-
T Consensus 32 ~~t~kai~~gkakLVilA~D~~~~~~~~i~~~c~~~~ipv~~~~~s~~eL---G~A~Gk 87 (112)
T 3iz5_f 32 KTVLKTLRSSLGKLIILANNCPPLRKSEIETYAMLAKISVHHFHGNNVDL---GTACGK 87 (112)
T ss_dssp HHHHHHHHTTCCSEEEECSCCCHHHHHHHHHHHHHTTCCEECCCCTTCTH---HHHHCT
T ss_pred HHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCcEEEeCCCHHHH---HHHhCC
Confidence 45667777788999999999998543 4567788888876 566665 445554
No 60
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=29.35 E-value=90 Score=24.51 Aligned_cols=51 Identities=12% Similarity=0.185 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCeEEEeCCCcCHH-----HHHHHHHCCeEEEEeCCHHHHHHHHHHhCC
Q 013920 279 EGLIKAVAESGAEVIVSGAAVGEM-----ALHFCERYKLMVLKISSKFELRRFCRTTGA 332 (434)
Q Consensus 279 ~~~v~~i~~~~~~lvl~~~~I~~~-----al~~l~~~~I~~v~~v~~~~L~~ia~~tGa 332 (434)
++..+.|.+-.+.+|+.+.++++. ...+|.++||.++...++.+| .+++|-
T Consensus 35 ~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eL---G~a~G~ 90 (120)
T 1vq8_F 35 NETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQQDDL---GHAAGL 90 (120)
T ss_dssp HHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHTTCCCEEEESCHHHH---HHHTTC
T ss_pred HHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECCHHHH---HHHhCC
Confidence 455667777789999999999773 335677789988877777666 455554
No 61
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=28.99 E-value=94 Score=24.56 Aligned_cols=51 Identities=24% Similarity=0.271 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCeEEEeCCCcCHH-----HHHHHHHCCeEEEEeCCHHHHHHHHHHhCC
Q 013920 279 EGLIKAVAESGAEVIVSGAAVGEM-----ALHFCERYKLMVLKISSKFELRRFCRTTGA 332 (434)
Q Consensus 279 ~~~v~~i~~~~~~lvl~~~~I~~~-----al~~l~~~~I~~v~~v~~~~L~~ia~~tGa 332 (434)
++..+.|.+-.+.+|+.+.++++. ...+|.+++|.++...++.+| .+++|-
T Consensus 34 ~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~v~sk~eL---G~a~G~ 89 (124)
T 2fc3_A 34 NETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPSKKRL---GEAAGI 89 (124)
T ss_dssp HHHHHHHHTTCCSEEEEETTCSSGGGTTTHHHHHHHTTCCEEEESCHHHH---HHHTTC
T ss_pred HHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHHcCCCEEEECCHHHH---HHHhCC
Confidence 455667777789999999998763 335677889888777777665 445554
No 62
>2pw9_A Putative formate dehydrogenase accessory protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Desulfotalea psychrophila LSV54} SCOP: c.97.1.5
Probab=27.93 E-value=61 Score=29.65 Aligned_cols=39 Identities=18% Similarity=0.298 Sum_probs=31.7
Q ss_pred HHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCC
Q 013920 281 LIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISS 319 (434)
Q Consensus 281 ~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~ 319 (434)
++++....|++++++-..-+..+.++..+.||+.+..++
T Consensus 207 mV~Kaa~aGIpvlvS~SApTslAV~lA~~~giTLiGf~R 245 (268)
T 2pw9_A 207 MVLKCARIGIPIIMSRTSPSSLGLALAKRSGATLVAYSR 245 (268)
T ss_dssp HHHHHHHHTCCEEEESSCBCHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHcCCCEEEEcccccHHHHHHHHHcCCEEEEEec
Confidence 567788888888888888888888888888888776654
No 63
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=27.63 E-value=1.5e+02 Score=22.63 Aligned_cols=51 Identities=16% Similarity=0.175 Sum_probs=37.8
Q ss_pred HHHHHHHHHcCCeEEEeCCCcCHHHH----HHHHHCCeEEEE-eCCHHHHHHHHHHhCC
Q 013920 279 EGLIKAVAESGAEVIVSGAAVGEMAL----HFCERYKLMVLK-ISSKFELRRFCRTTGA 332 (434)
Q Consensus 279 ~~~v~~i~~~~~~lvl~~~~I~~~al----~~l~~~~I~~v~-~v~~~~L~~ia~~tGa 332 (434)
++.++.|.+-.+.+||.+.+.++... +++..++|.++. ..++.+| .+++|-
T Consensus 28 ~~v~kai~~gkaklVilA~D~~~~~~~~i~~~c~~~~ip~~~~~~s~~eL---G~A~Gk 83 (105)
T 3u5e_c 28 KSTVKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNEL---GTAVGK 83 (105)
T ss_dssp HHHHHHHHTTCCSEEEECTTSCHHHHHHHHHHHHHHTCEEEECSSCHHHH---HHHTTC
T ss_pred HHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCCHHHH---HHHhCC
Confidence 35566777778999999999998654 456678999996 5566665 666675
No 64
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=26.00 E-value=1e+02 Score=24.34 Aligned_cols=51 Identities=24% Similarity=0.258 Sum_probs=36.8
Q ss_pred HHHHHHHHHcCCeEEEeCCCcCHH-----HHHHHHHCCeEEEEeCCHHHHHHHHHHhCC
Q 013920 279 EGLIKAVAESGAEVIVSGAAVGEM-----ALHFCERYKLMVLKISSKFELRRFCRTTGA 332 (434)
Q Consensus 279 ~~~v~~i~~~~~~lvl~~~~I~~~-----al~~l~~~~I~~v~~v~~~~L~~ia~~tGa 332 (434)
+...+.|.+-.+.+|+.+.+.++. ...+|.++||..+...++.+| .+++|-
T Consensus 37 ~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eL---G~a~Gk 92 (122)
T 3o85_A 37 NEALKQVNRGKAELVIIAADADPIEIVLHLPLACEDKGVPYVFIGSKNAL---GRACNV 92 (122)
T ss_dssp HHHHHHHHTTCCSEEEEETTCSSGGGGTTHHHHHHTTTCCEEEESCHHHH---HHHTTC
T ss_pred HHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHH---HHHhCC
Confidence 455667777789999999999764 334677889988877777665 555554
No 65
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=25.86 E-value=1.4e+02 Score=27.16 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=38.3
Q ss_pred HHHHHHHHcCCeEEEeCCCcCH-----HHHHHHHHCCeEEEEeCCHHHHHHHHHHh
Q 013920 280 GLIKAVAESGAEVIVSGAAVGE-----MALHFCERYKLMVLKISSKFELRRFCRTT 330 (434)
Q Consensus 280 ~~v~~i~~~~~~lvl~~~~I~~-----~al~~l~~~~I~~v~~v~~~~L~~ia~~t 330 (434)
..++.|.+-.+.+||++.++++ ....+|.++||.++..-++.+|-..+-.-
T Consensus 142 eV~KaIekgkAkLVIIA~DasP~ei~~~Lp~LC~~~~VPyi~v~sk~eLG~A~Gkk 197 (266)
T 2zkr_f 142 TVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGHLVHRK 197 (266)
T ss_dssp HHHHHHHTTCCSEEEEESCCSSSTTTTHHHHHHHHHTCCEEEESCHHHHHHHHTSS
T ss_pred HHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCC
Confidence 4466677778999999999988 34577889999988887777665554443
No 66
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=23.70 E-value=82 Score=24.70 Aligned_cols=51 Identities=24% Similarity=0.270 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCeEEEeCCCcCHH-----HHHHHHHCCeEEEEeCCHHHHHHHHHHhCC
Q 013920 279 EGLIKAVAESGAEVIVSGAAVGEM-----ALHFCERYKLMVLKISSKFELRRFCRTTGA 332 (434)
Q Consensus 279 ~~~v~~i~~~~~~lvl~~~~I~~~-----al~~l~~~~I~~v~~v~~~~L~~ia~~tGa 332 (434)
++..+.|.+-.+.+|+.+.++++. ...+|.++||.++...++.+| .+++|-
T Consensus 33 ~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eL---G~a~G~ 88 (119)
T 1rlg_A 33 NETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKNDL---GRAVGI 88 (119)
T ss_dssp HHHHHHHTTTCCSEEEEESCCSCSTTTTHHHHHHHHHTCCEEEESCHHHH---HHHTTC
T ss_pred HHHHHHHHcCCCcEEEEeCCCChHHHHHHHHHHHHHcCCCEEEeCCHHHH---HHHhCC
Confidence 455666666778999999888763 344677789888777777665 445554
No 67
>3gfv_A Uncharacterized ABC transporter solute-binding protein YCLQ; alpha-beta-sandwich, periplasmic binding protein fold (PBP fold); 1.75A {Bacillus subtilis subsp}
Probab=22.23 E-value=1.1e+02 Score=27.81 Aligned_cols=51 Identities=12% Similarity=0.050 Sum_probs=34.8
Q ss_pred HHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCC--------HHHHHHHHHHhCCe
Q 013920 282 IKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISS--------KFELRRFCRTTGAV 333 (434)
Q Consensus 282 v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~--------~~~L~~ia~~tGa~ 333 (434)
+++|..++|||||... .++...+.|.+.+..++-... .+.++.+++++|-.
T Consensus 88 ~E~i~~l~PDlIi~~~-~~~~~~~~L~~~~p~v~~~~~~~~~~~~~~~~i~~lg~~~g~~ 146 (303)
T 3gfv_A 88 FDKVAELDPDLIIISA-RQSESYKEFSKIAPTIYLGVDTAKYMESFKSDAETIGKIFDKE 146 (303)
T ss_dssp HHHHHHTCCSEEEECG-GGGGGHHHHHHHSCEEECCCCGGGHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhCCCCEEEEcC-cchhHHHHHHhhCCEEEEcCCCcchHHHHHHHHHHHHHHhCCh
Confidence 4578889999999874 456667778776644432221 34578888888853
No 68
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=21.57 E-value=2.2e+02 Score=21.34 Aligned_cols=51 Identities=16% Similarity=0.179 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCeEEEeCCCcCHHHHH----HHHHCCeEEEEe-CCHHHHHHHHHHhCC
Q 013920 279 EGLIKAVAESGAEVIVSGAAVGEMALH----FCERYKLMVLKI-SSKFELRRFCRTTGA 332 (434)
Q Consensus 279 ~~~v~~i~~~~~~lvl~~~~I~~~al~----~l~~~~I~~v~~-v~~~~L~~ia~~tGa 332 (434)
++..+.|.+-.+.+|+.+.+.++.... +|.+++|.++.. .++.+| .+++|-
T Consensus 22 ~~v~kai~~gka~lViiA~D~~~~~~~~l~~~c~~~~vp~~~~~~s~~eL---G~a~G~ 77 (101)
T 1w41_A 22 RKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARLSGIPVYEFEGTSVEL---GTLLGR 77 (101)
T ss_dssp HHHHHHHHHTCCSEEEEETTSCHHHHHHHHHHHHHHTCCEEEESSCHHHH---HHHTTC
T ss_pred HHHHHHHHcCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEecCCHHHH---HHHhCC
Confidence 345566777789999999888776665 455679988875 566665 555564
No 69
>1p90_A NAFY protein, hypothetical protein; ribonuclease H motif, protein binding; 1.80A {Azotobacter vinelandii} SCOP: c.55.5.2
Probab=21.32 E-value=94 Score=25.35 Aligned_cols=46 Identities=13% Similarity=0.092 Sum_probs=34.2
Q ss_pred cCCeEEEeCCCcCHHHHHHHHHCCeEEEEeC-C---HHHHHHHHHHhCCee
Q 013920 288 SGAEVIVSGAAVGEMALHFCERYKLMVLKIS-S---KFELRRFCRTTGAVA 334 (434)
Q Consensus 288 ~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v-~---~~~L~~ia~~tGa~i 334 (434)
.++++|||. +|.+-+...|.++||-++... . .+.++++.......+
T Consensus 66 ~g~~vvi~~-~iG~~a~~~L~~~GI~v~~~~~~~~i~eal~~l~~~L~~~~ 115 (145)
T 1p90_A 66 QDCQVLYVV-SIGGPAAAKVVRAGIHPLKKPKGCAAQEAIAELQTVMAGSP 115 (145)
T ss_dssp TTCSEEEES-BCCHHHHHHHHHTTCEEEECTTCEEHHHHHHHHHHHHHSCC
T ss_pred CCCCEEEEC-CCCHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHhcCCC
Confidence 489999998 799999999999999999874 2 344555554443333
No 70
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=21.01 E-value=1.8e+02 Score=19.30 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=22.9
Q ss_pred HHHHHHHHcCCChhhHHHHHHHH---HHHHHHHHHh
Q 013920 112 QGAEELIRMGLHPSEIISGYTKA---INKTIEVLEE 144 (434)
Q Consensus 112 ~~a~~li~~gi~p~~Ii~g~~~a---~~~~~~~l~~ 144 (434)
.+...|...|++...++++++.+ .+.+..+|.+
T Consensus 13 ~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniLle 48 (52)
T 2ooa_A 13 AKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILRE 48 (52)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 45667889999999999888765 2334444444
No 71
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=20.87 E-value=61 Score=27.34 Aligned_cols=50 Identities=14% Similarity=0.162 Sum_probs=36.3
Q ss_pred HHHHHH--HHcCCeEEEeCCCcCHH-----------HHHHHHHCCeEEEEeCCHHHHHHHHHH
Q 013920 280 GLIKAV--AESGAEVIVSGAAVGEM-----------ALHFCERYKLMVLKISSKFELRRFCRT 329 (434)
Q Consensus 280 ~~v~~i--~~~~~~lvl~~~~I~~~-----------al~~l~~~~I~~v~~v~~~~L~~ia~~ 329 (434)
+-++.| .+-.+.+++.+.+.++. +..+|.++||.++.-.+..+|-+.+-.
T Consensus 42 Et~KaL~~~k~~a~lcvLA~D~d~~~~i~~hi~~~li~alC~E~~Ip~i~V~s~k~LG~a~Gi 104 (165)
T 2kg4_A 42 EAAKLLNVDPDNVVLCLLAADEDDDRDVALQIHFTLIQAFCCENDINILRVSNPGRLAELLLL 104 (165)
T ss_dssp GHHHHHHHCTTTEEEEEEECCTGGGGCHHHHHHHHHHHHHHHHTTCCEEEESCHHHHHHHHHH
T ss_pred HHHHHHhcCCCcEEEEEEeCCCCccchhhhhccHHHHHHHHHHcCCCEEEECCHHHHHHHHCC
Confidence 445555 44567788888888622 336889999999999888887776654
No 72
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=20.72 E-value=1.8e+02 Score=26.53 Aligned_cols=29 Identities=10% Similarity=0.131 Sum_probs=23.5
Q ss_pred HHHHHHHHcCCeEEEeCCCcCHHHHHHHH
Q 013920 280 GLIKAVAESGAEVIVSGAAVGEMALHFCE 308 (434)
Q Consensus 280 ~~v~~i~~~~~~lvl~~~~I~~~al~~l~ 308 (434)
++++.+++.++.+||++..+++...+.+.
T Consensus 228 ~l~~~ik~~~v~~If~e~~~~~~~~~~ia 256 (291)
T 1pq4_A 228 QLIDTAKENNLTMVFGETQFSTKSSEAIA 256 (291)
T ss_dssp HHHHHHHTTTCCEEEEETTSCCHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCCChHHHHHHH
Confidence 45678889999999999999887776553
No 73
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=20.70 E-value=1.3e+02 Score=25.03 Aligned_cols=65 Identities=15% Similarity=0.250 Sum_probs=40.7
Q ss_pred cceeecceEEEEeee----ccccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHH
Q 013920 233 IKNMEKAKVAVFAGG----VDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCE 308 (434)
Q Consensus 233 ~~~~~n~kIlll~~~----l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~ 308 (434)
|+.+++.+|+++|+| |....++.-++ .+.++++.. +.+...+.|+.+-+.|..-.....+++.
T Consensus 1 ~~~~~~m~IlvlNGPNLNlLG~REP~iYG~---~Tl~di~~~----------l~~~a~~~g~~v~~~QSN~EGeLId~Ih 67 (156)
T 1gtz_A 1 PRSLANAPIMILNGPNLNLLGQAQPEIYGS---DTLADVEAL----------CVKAAAAHGGTVDFRQSNHEGELVDWIH 67 (156)
T ss_dssp -CCTTTSCEEEEECTTGGGTTTSCHHHHCS---CCHHHHHHH----------HHHHHHTTTCCEEEEECSCHHHHHHHHH
T ss_pred CCCccCceEEEEeCCCccccCCCCCCcCCC---CCHHHHHHH----------HHHHHHHcCCEEEEEeeCCHHHHHHHHH
Confidence 345667789999998 23333333222 233444432 2234456799999999998888888886
Q ss_pred HC
Q 013920 309 RY 310 (434)
Q Consensus 309 ~~ 310 (434)
+.
T Consensus 68 ~a 69 (156)
T 1gtz_A 68 EA 69 (156)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 74
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=20.35 E-value=3.3e+02 Score=25.13 Aligned_cols=59 Identities=8% Similarity=0.100 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHH----HHHCCeE--EEE----eCCHHHHHHHHHHhCCeecc
Q 013920 274 EEAKVEGLIKAVAESGAEVIVSGAAVGEMALHF----CERYKLM--VLK----ISSKFELRRFCRTTGAVAML 336 (434)
Q Consensus 274 E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~----l~~~~I~--~v~----~v~~~~L~~ia~~tGa~ii~ 336 (434)
+.++++++++ .|++-+++|--.|.....- +.+.||. ++- ..+...+++++..+|+.+-.
T Consensus 165 d~~~Lk~Kvd----AGAdf~iTQ~ffD~~~~~~f~~~~r~~Gi~vPIi~GImPi~s~~~~~~~~~~~Gv~iP~ 233 (304)
T 3fst_A 165 DLLNLKRKVD----AGANRAITQFFFDVESYLRFRDRCVSAGIDVEIIPGILPVSNFKQAKKLADMTNVRIPA 233 (304)
T ss_dssp HHHHHHHHHH----HTCCEEEECCCSCHHHHHHHHHHHHHTTCCSCEECEECCCSCHHHHHHHHHHHTCCCCH
T ss_pred HHHHHHHHHH----cCCCEEEeCccCCHHHHHHHHHHHHhcCCCCcEEEEecccCCHHHHHHHHHcCCCcCCH
Confidence 4445555554 5999999999998655443 3456652 332 34688999999999997644
No 75
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=20.19 E-value=72 Score=25.03 Aligned_cols=50 Identities=10% Similarity=0.208 Sum_probs=35.6
Q ss_pred HHHHHHHcCCeEEEeCCCcCHH-H----HHHHHHCCeEEEEeCCHHHHHHHHHHhCCe
Q 013920 281 LIKAVAESGAEVIVSGAAVGEM-A----LHFCERYKLMVLKISSKFELRRFCRTTGAV 333 (434)
Q Consensus 281 ~v~~i~~~~~~lvl~~~~I~~~-a----l~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 333 (434)
.++.|.+..+.+|+.+.++++. . ..+|.++||.++..-++.+| .+++|-.
T Consensus 33 v~kaI~~gka~LVvIA~D~~p~~i~~~l~~lC~~~~VP~~~v~sk~~L---G~a~G~k 87 (113)
T 3jyw_G 33 VVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKARL---GTLVNQK 87 (113)
T ss_dssp HHHTTTTTCCSEEEECSCCSSHHHHTTHHHHHHHTTCCCEECSCSTTT---HHHHCSS
T ss_pred HHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEECCHHHH---HHHHCCC
Confidence 3455666789999999999873 2 34678899988877676555 5555654
No 76
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=20.18 E-value=33 Score=28.25 Aligned_cols=51 Identities=24% Similarity=0.305 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCeEEEeCCCcCHH-HHH----HHHHCCeEEEEeCCHHHHHHHHHHhCC
Q 013920 279 EGLIKAVAESGAEVIVSGAAVGEM-ALH----FCERYKLMVLKISSKFELRRFCRTTGA 332 (434)
Q Consensus 279 ~~~v~~i~~~~~~lvl~~~~I~~~-al~----~l~~~~I~~v~~v~~~~L~~ia~~tGa 332 (434)
+..++.|.+-.+.+|+.+.++++. ... +|.++||.++...++.+| .+++|-
T Consensus 56 kev~KaI~~gkakLVIIA~D~~p~e~~~~l~~lC~~~~VP~~~v~sk~eL---G~a~Gk 111 (144)
T 2jnb_A 56 NEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQAL---GRACGV 111 (144)
T ss_dssp HHHHHHHHHTCEEEEEEETTCSCHHHHTTSCSSCGGGCCCCEEESCSHHH---HHHHTC
T ss_pred HHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEECCHHHH---HHHhCC
Confidence 456677777889999999999995 333 556788887766666655 555554
Done!