Query 013921
Match_columns 434
No_of_seqs 255 out of 1328
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 08:43:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013921.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013921hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1337 N-methyltransferase [G 100.0 2.6E-34 5.7E-39 299.5 20.9 346 62-428 47-413 (472)
2 KOG1338 Uncharacterized conser 100.0 1.5E-32 3.2E-37 265.4 15.9 270 62-345 7-313 (466)
3 PF00856 SET: SET domain; Int 99.7 1.5E-17 3.3E-22 146.5 6.6 53 239-297 110-162 (162)
4 PF09273 Rubis-subs-bind: Rubi 99.6 2.1E-15 4.5E-20 129.7 9.0 103 327-429 1-103 (128)
5 smart00317 SET SET (Su(var)3-9 98.6 2.9E-08 6.4E-13 82.8 3.9 47 244-296 70-116 (116)
6 KOG4442 Clathrin coat binding 94.9 0.025 5.4E-07 60.3 4.1 45 247-297 193-237 (729)
7 KOG2589 Histone tail methylase 94.6 0.039 8.5E-07 54.6 4.1 47 242-298 192-238 (453)
8 KOG1085 Predicted methyltransf 94.5 0.033 7.1E-07 53.4 3.3 52 248-306 334-385 (392)
9 KOG1079 Transcriptional repres 88.3 0.42 9E-06 51.1 3.4 45 247-297 665-709 (739)
10 KOG1080 Histone H3 (Lys4) meth 87.3 0.56 1.2E-05 53.2 3.8 45 247-297 939-983 (1005)
11 KOG1083 Putative transcription 83.4 1.2 2.6E-05 50.0 4.0 44 249-298 1252-1295(1306)
12 COG2940 Proteins containing SE 72.9 1.9 4.2E-05 45.5 1.7 45 247-298 405-450 (480)
13 KOG1082 Histone H3 (Lys9) meth 72.9 3.3 7.2E-05 42.1 3.4 49 247-298 272-321 (364)
14 COG1188 Ribosome-associated he 49.8 20 0.00044 29.3 3.3 54 216-298 8-61 (100)
15 KOG2461 Transcription factor B 35.1 33 0.00072 35.3 3.0 35 275-310 121-155 (396)
16 KOG1085 Predicted methyltransf 34.0 34 0.00074 33.3 2.7 29 85-113 260-289 (392)
17 PF08666 SAF: SAF domain; Int 28.5 32 0.0007 24.8 1.2 15 92-106 2-16 (63)
18 PF10281 Ish1: Putative stress 24.8 69 0.0015 21.0 2.2 17 64-80 6-22 (38)
19 PF09652 Cas_VVA1548: Putative 24.8 62 0.0014 26.1 2.3 40 64-113 6-46 (93)
20 KOG1337 N-methyltransferase [G 23.9 52 0.0011 34.6 2.3 121 62-186 4-136 (472)
21 TIGR02059 swm_rep_I cyanobacte 23.6 88 0.0019 25.6 2.9 25 274-298 73-97 (101)
22 TIGR02620 cas_VVA1548 putative 22.3 69 0.0015 25.8 2.1 39 65-113 7-46 (93)
23 KOG1081 Transcription factor N 20.1 41 0.0009 35.4 0.6 45 248-298 372-416 (463)
No 1
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=100.00 E-value=2.6e-34 Score=299.48 Aligned_cols=346 Identities=32% Similarity=0.429 Sum_probs=259.0
Q ss_pred hhHHHHHHHHHhCCCCCCCCCeeecccCCccEEEEccCCCCCCEEEEecCCCccCccccccchhhhhhcCCChh-HHHHH
Q 013921 62 AQVETFWQWLRDQKVVSPKSPIRPATFPEGLGLVAQRDIAKNEVVLEVPMKFWINPDTVAASEIGSLCSGLKPW-ISVAL 140 (434)
Q Consensus 62 ~~~~~f~~Wl~~~G~~~~~~~v~~~~~~~GrGl~A~~~I~~ge~ll~IP~~~~ls~~~~~~~~~~~~~~~l~~~-~~Lal 140 (434)
+..+.+.-|.+..|...... ...+....++++.+..++..++.+..+|....+..+.... .+.. ..+++
T Consensus 47 ~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~ 116 (472)
T KOG1337|consen 47 ENIKSLKFWLTGNGLSSSKS-SLPGNDIDEWPLLVSIRLIKGEKLLLVPPLLLLIAKRKPY---------NDLLPIALAL 116 (472)
T ss_pred cccccceeccccCCcchhhh-ccccccccccchhhhhhhhhhhhhccCCchhhhccccccC---------ccccHHHHHH
Confidence 55666666666666654431 1122222355666666665666555555554444333221 1122 68899
Q ss_pred HHHHHh-cCCCCCcHHHHhhcCCCCCCccccCHhHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC----C
Q 013921 141 FLIREK-KKEDSPWRVYLDILPECTDSTVFWSEEELVELQGTQLLSTTLGVKEYVQNEYLKVEEEIILPNKQLFP----R 215 (434)
Q Consensus 141 ~Ll~E~-~~~~S~w~pYl~~LP~~~~~pl~w~~~el~~L~gt~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~f~----~ 215 (434)
++++|+ .+..|.|++|+..||..+++|++|...++..|++++....+..++..++..+..+.+ +...++..++ +
T Consensus 117 ~l~~~~~~~~~s~w~~~i~~l~~~~~~p~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d 195 (472)
T KOG1337|consen 117 FLLLEWAHGEISKWKPYISTLPSQYNSPLLWSEDEVKSLLSTPLFEIVASRRQNLVNKSAELLE-VLQSHPSLFGSDLFD 195 (472)
T ss_pred HHHHhhhccccccchhhhhhchhhcCCccccCHHHHHHhhcchhhHHHHHHHHHhhhhHHHHHH-HHHhccccccccccC
Confidence 999999 777799999999999999999999999999999999999988888777776555543 3334443332 2
Q ss_pred CCCHHHHHHHHHHHHhccccccCC---------CcEEEeeccccccCCCCCCCCCceEEecCCCccCCCceEEEEeCCCC
Q 013921 216 PITLDDFLWAFGILRSRAFSRLRG---------QNLVLIPLADLINHSPGITTEDYAYEIKGAGLFSRDLLFSLRTPVPV 286 (434)
Q Consensus 216 ~~t~e~f~WA~~~V~SRaf~~~~~---------~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~g~~~~~~~~~l~a~r~i 286 (434)
.+++++|.||+++|.||+|+...+ +..+|+|++||+||++... ..+++..++.+.+++.++|
T Consensus 196 ~~~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~NH~~~~~---------~~~~~~~d~~~~l~~~~~v 266 (472)
T KOG1337|consen 196 TFTFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLLNHSPEVI---------KAGYNQEDEAVELVAERDV 266 (472)
T ss_pred ccchHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhhccCchhc---------cccccCCCCcEEEEEeeee
Confidence 379999999999999999986422 3679999999999998752 1234445668999999999
Q ss_pred CCCCeEEeccCCCCCcHHHHHhCCcCCCCCCCceEEEEeecCCCCcChhhHHHHHHHCCCCCccEEEEecCCCCCHHHHH
Q 013921 287 KAGEQVLIQYDLNKSNAELALDYGFIESKSDRNAYTLTLEISESDPFFGDKLDIAETNGLGESAYFDIVLGRTLPPAMLQ 366 (434)
Q Consensus 287 ~~GeEv~i~YG~~~sN~~LL~~YGFv~~~Np~D~v~l~l~i~~~d~~~~~K~~lL~~~gl~~~~~f~l~~~~~~~~~Ll~ 366 (434)
++||||||+||+ ++|++||++|||+.++||+|.|.+.+.++..|+.+..|...+.++++.....|.+...+....+++.
T Consensus 267 ~~geevfi~YG~-~~N~eLL~~YGFv~~~N~~d~v~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (472)
T KOG1337|consen 267 SAGEEVFINYGP-KSNAELLLHYGFVEEDNPYDSVTLKLALPPEDVSYLDKSDVLKKNGLPSSGEFSILLTGEPVSEMLL 345 (472)
T ss_pred cCCCeEEEecCC-CchHHHHHhcCCCCCCCCcceEEEeecccccccchhHHHHHHhhcCCCCCceEEEeecCCchhhhhh
Confidence 999999999997 9999999999999999999999999999999999999999999999999999988776555566655
Q ss_pred HHHHHhcCCCcH--HhHH---HHhhcccccCCCCCCChHHHHHHHHHHHHH-HHHHHhcCCCchhhhc
Q 013921 367 YLRLVALGGTDA--FLLE---SIFRNTIWGHLDLPVSHANEELICRVVRDA-CKSALSGFHTTIEEVN 428 (434)
Q Consensus 367 ~lRl~~~~~~e~--~~~~---~~~~~~~~g~~~~~vS~~nE~~~~~~L~~~-~~~~L~~y~TTieeDe 428 (434)
..+++.+..... ..+. ...+...+.....+++.++|...+..+... |...+..+.+++++|+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 413 (472)
T KOG1337|consen 346 LFLLLDALSERLESELVCEETSISRSCEEFLSGLPVSLDNEQKLLYGLQKLLCSLTLRVFKALIDEDE 413 (472)
T ss_pred hhhhhccccccchhhhhhhhcccccccccccccCceeecchHHHHHHHhhccccchhcccchhhhhhh
Confidence 555443333322 1111 122334455567789999999999999999 9999999999995554
No 2
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.5e-32 Score=265.38 Aligned_cols=270 Identities=22% Similarity=0.351 Sum_probs=212.4
Q ss_pred hhHHHHHHHHHhCC-CCCCCCCeeeccc---CC--ccEEEEccCCCCCCEEEEecCCCccCcccccc-----chhhhhhc
Q 013921 62 AQVETFWQWLRDQK-VVSPKSPIRPATF---PE--GLGLVAQRDIAKNEVVLEVPMKFWINPDTVAA-----SEIGSLCS 130 (434)
Q Consensus 62 ~~~~~f~~Wl~~~G-~~~~~~~v~~~~~---~~--GrGl~A~~~I~~ge~ll~IP~~~~ls~~~~~~-----~~~~~~~~ 130 (434)
+..+.|+.|++..+ .+.++ +|.+.+. .+ |+|++|+++|++||.++.+|++++++..+... +....++.
T Consensus 7 d~~~~fl~w~k~t~eletSp-Ki~~ndl~~v~~~~G~g~vAtesIkkgE~Lf~~prdsvLsvtts~li~~lps~~rv~Ln 85 (466)
T KOG1338|consen 7 DLAKRFLLWGKLTLELETSP-KIDNNDLPWVERIAGAGIVATESIKKGESLFAYPRDSVLSVTTSALITPLPSDIRVLLN 85 (466)
T ss_pred cHHHHHHHHHHHhhheeecc-cccccccchhhhhcccceeeehhhcCCceEEEecCccEEeeehHHhcccchHHHHHHhh
Confidence 45789999999987 77766 4555442 23 89999999999999999999999999877532 12333455
Q ss_pred CCChhHHHHHHHHHHh-cCCCCCcHHHHhhcCCC--CCCccccCHhHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHhc
Q 013921 131 GLKPWISVALFLIREK-KKEDSPWRVYLDILPEC--TDSTVFWSEEELVELQGTQLLSTTLGVKEYVQNEYLKVEEEIIL 207 (434)
Q Consensus 131 ~l~~~~~Lal~Ll~E~-~~~~S~w~pYl~~LP~~--~~~pl~w~~~el~~L~gt~l~~~~~~~~~~~~~~~~~l~~~l~~ 207 (434)
+.+.|..|++.|++|. .+.+|+|+||++.+|+. .++|+||+++|++.|..+.+++++.+.++.++++|....+++.+
T Consensus 86 e~gsw~~Lllvll~E~~~pq~SrWrPYfs~wp~p~rm~spifWdEnEl~~Ll~stvlee~~Kd~aeI~~~~i~~i~pf~~ 165 (466)
T KOG1338|consen 86 EVGSWGMLLLVLLREKKMPQKSRWRPYFSRWPQPARMHSPIFWDENELSMLLCSTVLEETVKDKAEIEKDFIFVIQPFKQ 165 (466)
T ss_pred cCCcHHHHHHHHHHHhhcccccccccHHHhCCChhhcCCCccCCchHHHHHhhcccchhhHhHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999 45559999999999984 78999999999998655556666888899999999999999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHhccccccC--------------CCcEEEeeccccccCCCCCCCCCceEEecCCCccC
Q 013921 208 PNKQLFPRPITLDDFLWAFGILRSRAFSRLR--------------GQNLVLIPLADLINHSPGITTEDYAYEIKGAGLFS 273 (434)
Q Consensus 208 ~~~~~f~~~~t~e~f~WA~~~V~SRaf~~~~--------------~~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~g~~~ 273 (434)
.+|..|.. +++|+|..+++++.+.+|.+.- -...+|+|.+||+||+......+..+
T Consensus 166 ~~p~vfs~-~slEdF~y~~Al~laysfdve~~~s~~~~eee~e~e~ngk~m~p~ad~lNhd~~k~nanl~y--------- 235 (466)
T KOG1338|consen 166 HCPIVFSR-PSLEDFMYAYALGLAYSFDVEFLLSLDNLEEESEIECNGKLMTPIADFLNHDGLKANANLRY--------- 235 (466)
T ss_pred hCcchhcc-cCHHHHHHHHHHHHHHheeeehhcchhhhhhhhccccCcccccchhhhhccchhhcccceec---------
Confidence 89888844 7999999999999999997631 12569999999999997643223232
Q ss_pred CCceEEEEeCCCCCCCCeEEeccCCCCCcHHHHHhCCcCCCCCC---------CceEEEEeecCCCCcChhhHHHHHHHC
Q 013921 274 RDLLFSLRTPVPVKAGEQVLIQYDLNKSNAELALDYGFIESKSD---------RNAYTLTLEISESDPFFGDKLDIAETN 344 (434)
Q Consensus 274 ~~~~~~l~a~r~i~~GeEv~i~YG~~~sN~~LL~~YGFv~~~Np---------~D~v~l~l~i~~~d~~~~~K~~lL~~~ 344 (434)
+++|+.|+|.|+|.+|+||+++||. ++|. |++||.+.-.-. +|.+.+-.+++.+++.+..|.-+++.+
T Consensus 236 ~~NcL~mva~r~iekgdev~n~dg~-~p~~--l~~l~ka~c~gihm~~g~~~l~niv~~l~D~~~d~tm~~~R~il~ql~ 312 (466)
T KOG1338|consen 236 EDNCLEMVADRNIEKGDEVDNSDGL-KPMG--LLKLTKALCVGIHMVWGILKLYNIVQILMDVPNDDTMRNMRLILLQLH 312 (466)
T ss_pred cCcceeeeecCCCCCcccccccccc-Ccch--hhhhhhhccceeeeecceeecchHHHHHhcCCCcchHHHHHHHHHHhc
Confidence 3679999999999999999999996 8888 888887765432 223333345667778777776655444
Q ss_pred C
Q 013921 345 G 345 (434)
Q Consensus 345 g 345 (434)
+
T Consensus 313 n 313 (466)
T KOG1338|consen 313 N 313 (466)
T ss_pred c
Confidence 3
No 3
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.70 E-value=1.5e-17 Score=146.50 Aligned_cols=53 Identities=25% Similarity=0.421 Sum_probs=40.9
Q ss_pred CCcEEEeeccccccCCCCCCCCCceEEecCCCccCCCceEEEEeCCCCCCCCeEEeccC
Q 013921 239 GQNLVLIPLADLINHSPGITTEDYAYEIKGAGLFSRDLLFSLRTPVPVKAGEQVLIQYD 297 (434)
Q Consensus 239 ~~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~g~~~~~~~~~l~a~r~i~~GeEv~i~YG 297 (434)
.+..+|+|++||+||+..+ |+.+....+ ..++.+.++|.|+|++|||||++||
T Consensus 110 ~~~~~l~p~~d~~NHsc~p---n~~~~~~~~---~~~~~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 110 RDGIALYPFADMLNHSCDP---NCEVSFDFD---GDGGCLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp EEEEEEETGGGGSEEESST---SEEEEEEEE---TTTTEEEEEESS-B-TTSBEEEEST
T ss_pred ccccccCcHhHhecccccc---ccceeeEee---cccceEEEEECCccCCCCEEEEEEC
Confidence 3468999999999999976 455554310 1467999999999999999999999
No 4
>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices. It allows binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco holoenzyme complex []. ; PDB: 3QXY_A 3RC0_A 1P0Y_A 2H2E_C 2H23_A 1MLV_C 2H2J_B 2H21_B 1OZV_C 3SMT_A.
Probab=99.61 E-value=2.1e-15 Score=129.72 Aligned_cols=103 Identities=31% Similarity=0.515 Sum_probs=85.7
Q ss_pred cCCCCcChhhHHHHHHHCCCCCccEEEEecCCCCCHHHHHHHHHHhcCCCcHHhHHHHhhcccccCCCCCCChHHHHHHH
Q 013921 327 ISESDPFFGDKLDIAETNGLGESAYFDIVLGRTLPPAMLQYLRLVALGGTDAFLLESIFRNTIWGHLDLPVSHANEELIC 406 (434)
Q Consensus 327 i~~~d~~~~~K~~lL~~~gl~~~~~f~l~~~~~~~~~Ll~~lRl~~~~~~e~~~~~~~~~~~~~g~~~~~vS~~nE~~~~ 406 (434)
++++||+++.|.++|+.+|+..+..|.+..++.+|++|++++||+++++++............++....|+|.+||.+++
T Consensus 1 l~~~D~l~~~K~~lL~~~gl~~~~~f~l~~~~~~~~~Ll~~lRv~~~~~~e~~~~~~~~~~~~~~~~~~~ls~~nE~~~l 80 (128)
T PF09273_consen 1 LSPSDPLFEEKKQLLEEHGLSGDQTFDLRADGPLPPELLAALRVLLMTEEELRALKSLADSSEWSDRSEPLSPENEIAAL 80 (128)
T ss_dssp --TTSTTHHHHHHHHHHTTS-SEEEEEEECCSSSHHHHHHHHHHHHSCHHHHHHHHHCGTTTHCCHCCC-SBHHHHHHHH
T ss_pred CCchhhhHHHHHHHHHHCCCCCCceeeeeCCCCCCHHHHHHHHHHHcChHHHHHHHHhhcccccccccCCCchhhHHHHH
Confidence 46789999999999999999988889999877789999999999999988877665544333333456789999999999
Q ss_pred HHHHHHHHHHHhcCCCchhhhcc
Q 013921 407 RVVRDACKSALSGFHTTIEEVNV 429 (434)
Q Consensus 407 ~~L~~~~~~~L~~y~TTieeDe~ 429 (434)
++|.++|+.+|++|+||+|||+.
T Consensus 81 ~~L~~~~~~~L~~y~TtleeD~~ 103 (128)
T PF09273_consen 81 QFLIDLCEARLSAYPTTLEEDEE 103 (128)
T ss_dssp HHHHHHHHHHHTTSSS-HHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHH
Confidence 99999999999999999999975
No 5
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=98.61 E-value=2.9e-08 Score=82.76 Aligned_cols=47 Identities=23% Similarity=0.228 Sum_probs=36.3
Q ss_pred EeeccccccCCCCCCCCCceEEecCCCccCCCceEEEEeCCCCCCCCeEEecc
Q 013921 244 LIPLADLINHSPGITTEDYAYEIKGAGLFSRDLLFSLRTPVPVKAGEQVLIQY 296 (434)
Q Consensus 244 LvP~~Dm~NH~~~~~~~~~~~~~~~~g~~~~~~~~~l~a~r~i~~GeEv~i~Y 296 (434)
+.|+++++||+..++ +.+..... .....+.++|.|+|++||||+++|
T Consensus 70 ~~~~~~~iNHsc~pN---~~~~~~~~---~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 70 KGNIARFINHSCEPN---CELLFVEV---NGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred cCcHHHeeCCCCCCC---EEEEEEEE---CCCcEEEEEECCCcCCCCEEeecC
Confidence 899999999999874 44443211 012369999999999999999999
No 6
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.93 E-value=0.025 Score=60.25 Aligned_cols=45 Identities=27% Similarity=0.422 Sum_probs=38.3
Q ss_pred ccccccCCCCCCCCCceEEecCCCccCCCceEEEEeCCCCCCCCeEEeccC
Q 013921 247 LADLINHSPGITTEDYAYEIKGAGLFSRDLLFSLRTPVPVKAGEQVLIQYD 297 (434)
Q Consensus 247 ~~Dm~NH~~~~~~~~~~~~~~~~g~~~~~~~~~l~a~r~i~~GeEv~i~YG 297 (434)
++=++||+.++++..-.|.+.+ ...+-+.+.+.|++||||+..|+
T Consensus 193 laRFiNHSC~PNa~~~KWtV~~------~lRvGiFakk~I~~GEEITFDYq 237 (729)
T KOG4442|consen 193 LARFINHSCDPNAEVQKWTVPD------ELRVGIFAKKVIKPGEEITFDYQ 237 (729)
T ss_pred HHHhhcCCCCCCceeeeeeeCC------eeEEEEeEecccCCCceeeEecc
Confidence 5668999999988777898853 45677889999999999999998
No 7
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=94.57 E-value=0.039 Score=54.59 Aligned_cols=47 Identities=23% Similarity=0.291 Sum_probs=36.5
Q ss_pred EEEeeccccccCCCCCCCCCceEEecCCCccCCCceEEEEeCCCCCCCCeEEeccCC
Q 013921 242 LVLIPLADLINHSPGITTEDYAYEIKGAGLFSRDLLFSLRTPVPVKAGEQVLIQYDL 298 (434)
Q Consensus 242 ~~LvP~~Dm~NH~~~~~~~~~~~~~~~~g~~~~~~~~~l~a~r~i~~GeEv~i~YG~ 298 (434)
.-|=|-+ ++||+..+ |+.+...+ .+...+++.|||++||||+--||.
T Consensus 192 LwLGPaa-fINHDCrp---nCkFvs~g------~~tacvkvlRDIePGeEITcFYgs 238 (453)
T KOG2589|consen 192 LWLGPAA-FINHDCRP---NCKFVSTG------RDTACVKVLRDIEPGEEITCFYGS 238 (453)
T ss_pred heeccHH-hhcCCCCC---CceeecCC------CceeeeehhhcCCCCceeEEeecc
Confidence 4455644 79999987 56665432 357889999999999999999996
No 8
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=94.49 E-value=0.033 Score=53.37 Aligned_cols=52 Identities=27% Similarity=0.310 Sum_probs=37.0
Q ss_pred cccccCCCCCCCCCceEEecCCCccCCCceEEEEeCCCCCCCCeEEeccCCCCCcHHHH
Q 013921 248 ADLINHSPGITTEDYAYEIKGAGLFSRDLLFSLRTPVPVKAGEQVLIQYDLNKSNAELA 306 (434)
Q Consensus 248 ~Dm~NH~~~~~~~~~~~~~~~~g~~~~~~~~~l~a~r~i~~GeEv~i~YG~~~sN~~LL 306 (434)
.-|+||+...+...-..+++ ....+.++|.++|.+|||+...||. +|-+.++
T Consensus 334 GRLINHS~~gNl~TKvv~Id------g~pHLiLvA~rdIa~GEELlYDYGD-RSkesi~ 385 (392)
T KOG1085|consen 334 GRLINHSVRGNLKTKVVEID------GSPHLILVARRDIAQGEELLYDYGD-RSKESIA 385 (392)
T ss_pred hhhhcccccCcceeeEEEec------CCceEEEEeccccccchhhhhhccc-cchhHHh
Confidence 34789997654311122333 2568999999999999999999995 7765544
No 9
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=88.27 E-value=0.42 Score=51.07 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=32.4
Q ss_pred ccccccCCCCCCCCCceEEecCCCccCCCceEEEEeCCCCCCCCeEEeccC
Q 013921 247 LADLINHSPGITTEDYAYEIKGAGLFSRDLLFSLRTPVPVKAGEQVLIQYD 297 (434)
Q Consensus 247 ~~Dm~NH~~~~~~~~~~~~~~~~g~~~~~~~~~l~a~r~i~~GeEv~i~YG 297 (434)
.+-++||+..+++..-..-+. .+..+-+.|.|.|.+|||+|..|+
T Consensus 665 k~rFANHS~nPNCYAkvm~V~------GdhRIGifAkRaIeagEELffDYr 709 (739)
T KOG1079|consen 665 KIRFANHSFNPNCYAKVMMVA------GDHRIGIFAKRAIEAGEELFFDYR 709 (739)
T ss_pred hhhhccCCCCCCcEEEEEEec------CCcceeeeehhhcccCceeeeeec
Confidence 456789999774311112223 245788999999999999999998
No 10
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=87.26 E-value=0.56 Score=53.21 Aligned_cols=45 Identities=22% Similarity=0.303 Sum_probs=34.5
Q ss_pred ccccccCCCCCCCCCceEEecCCCccCCCceEEEEeCCCCCCCCeEEeccC
Q 013921 247 LADLINHSPGITTEDYAYEIKGAGLFSRDLLFSLRTPVPVKAGEQVLIQYD 297 (434)
Q Consensus 247 ~~Dm~NH~~~~~~~~~~~~~~~~g~~~~~~~~~l~a~r~i~~GeEv~i~YG 297 (434)
++=++||+..+++..-...+. ++..++|+|.|+|.+||||+..|-
T Consensus 939 iAr~InHsC~PNCyakvi~V~------g~~~IvIyakr~I~~~EElTYDYk 983 (1005)
T KOG1080|consen 939 IARFINHSCNPNCYAKVITVE------GDKRIVIYSKRDIAAGEELTYDYK 983 (1005)
T ss_pred hhheeecccCCCceeeEEEec------CeeEEEEEEecccccCceeeeecc
Confidence 667899999986432222333 356899999999999999999996
No 11
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=83.40 E-value=1.2 Score=50.00 Aligned_cols=44 Identities=23% Similarity=0.357 Sum_probs=36.4
Q ss_pred ccccCCCCCCCCCceEEecCCCccCCCceEEEEeCCCCCCCCeEEeccCC
Q 013921 249 DLINHSPGITTEDYAYEIKGAGLFSRDLLFSLRTPVPVKAGEQVLIQYDL 298 (434)
Q Consensus 249 Dm~NH~~~~~~~~~~~~~~~~g~~~~~~~~~l~a~r~i~~GeEv~i~YG~ 298 (434)
-+.||+..+++....|.++| ...+.|.|.|||.+||||+..|.-
T Consensus 1252 RfinhscKPNc~~qkwSVNG------~~Rv~L~A~rDi~kGEELtYDYN~ 1295 (1306)
T KOG1083|consen 1252 RFINHSCKPNCEMQKWSVNG------EYRVGLFALRDLPKGEELTYDYNF 1295 (1306)
T ss_pred cccccccCCCCccccccccc------eeeeeeeecCCCCCCceEEEeccc
Confidence 34789988888777888864 457888999999999999999973
No 12
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=72.94 E-value=1.9 Score=45.49 Aligned_cols=45 Identities=27% Similarity=0.271 Sum_probs=31.7
Q ss_pred ccccccCCCCCCCCCceEEecC-CCccCCCceEEEEeCCCCCCCCeEEeccCC
Q 013921 247 LADLINHSPGITTEDYAYEIKG-AGLFSRDLLFSLRTPVPVKAGEQVLIQYDL 298 (434)
Q Consensus 247 ~~Dm~NH~~~~~~~~~~~~~~~-~g~~~~~~~~~l~a~r~i~~GeEv~i~YG~ 298 (434)
+.=++||+..++. .....+ .| ...+..++.+||++||||.+.||.
T Consensus 405 ~~r~~nHS~~pN~---~~~~~~~~g----~~~~~~~~~rDI~~geEl~~dy~~ 450 (480)
T COG2940 405 VARFINHSCTPNC---EASPIEVNG----IFKISIYAIRDIKAGEELTYDYGP 450 (480)
T ss_pred ccceeecCCCCCc---ceecccccc----cceeeecccccchhhhhhcccccc
Confidence 4448999997754 332211 11 236778899999999999999996
No 13
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=72.90 E-value=3.3 Score=42.09 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=34.1
Q ss_pred ccccccCCCCCCCCCceEEe-cCCCccCCCceEEEEeCCCCCCCCeEEeccCC
Q 013921 247 LADLINHSPGITTEDYAYEI-KGAGLFSRDLLFSLRTPVPVKAGEQVLIQYDL 298 (434)
Q Consensus 247 ~~Dm~NH~~~~~~~~~~~~~-~~~g~~~~~~~~~l~a~r~i~~GeEv~i~YG~ 298 (434)
++=++||+..++ ..|.. ..++....-..+.+.+.++|.+|+|++..||.
T Consensus 272 v~RfinHSC~PN---~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~ 321 (364)
T KOG1082|consen 272 VARFINHSCSPN---LLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGK 321 (364)
T ss_pred ccccccCCCCcc---ceeeeeeecCCccchheeeeeeccccCCCcccchhhcc
Confidence 456799999874 33322 11122223456788899999999999999996
No 14
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=49.78 E-value=20 Score=29.28 Aligned_cols=54 Identities=20% Similarity=0.481 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHhccccccCCCcEEEeeccccccCCCCCCCCCceEEecCCCccCCCceEEEEeCCCCCCCCeEEec
Q 013921 216 PITLDDFLWAFGILRSRAFSRLRGQNLVLIPLADLINHSPGITTEDYAYEIKGAGLFSRDLLFSLRTPVPVKAGEQVLIQ 295 (434)
Q Consensus 216 ~~t~e~f~WA~~~V~SRaf~~~~~~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~g~~~~~~~~~l~a~r~i~~GeEv~i~ 295 (434)
..-+|.|+|+.-++-+|+.-- ||++-.. ..++ +. ..++.++++.||+|.|.
T Consensus 8 ~mRLDKwL~~aR~~KrRslAk------------~~~~~Gr--------V~vN--------G~-~aKpS~~VK~GD~l~i~ 58 (100)
T COG1188 8 RMRLDKWLWAARFIKRRSLAK------------EMIEGGR--------VKVN--------GQ-RAKPSKEVKVGDILTIR 58 (100)
T ss_pred ceehHHHHHHHHHhhhHHHHH------------HHHHCCe--------EEEC--------CE-EcccccccCCCCEEEEE
Confidence 356899999999999999852 3333221 1121 12 23788999999999999
Q ss_pred cCC
Q 013921 296 YDL 298 (434)
Q Consensus 296 YG~ 298 (434)
||.
T Consensus 59 ~~~ 61 (100)
T COG1188 59 FGN 61 (100)
T ss_pred eCC
Confidence 995
No 15
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=35.07 E-value=33 Score=35.30 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=28.7
Q ss_pred CceEEEEeCCCCCCCCeEEeccCCCCCcHHHHHhCC
Q 013921 275 DLLFSLRTPVPVKAGEQVLIQYDLNKSNAELALDYG 310 (434)
Q Consensus 275 ~~~~~l~a~r~i~~GeEv~i~YG~~~sN~~LL~~YG 310 (434)
...+-.++.|+|.+||||.+-||. --+.+|...+|
T Consensus 121 ~~~Ifyrt~r~I~p~eELlVWY~~-e~~~~L~~~~~ 155 (396)
T KOG2461|consen 121 GENIFYRTIRDIRPNEELLVWYGS-EYAEELAYGHG 155 (396)
T ss_pred cCceEEEecccCCCCCeEEEEecc-chHhHhcccCC
Confidence 346778999999999999999996 45677777777
No 16
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=33.97 E-value=34 Score=33.32 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=22.5
Q ss_pred ecccC-CccEEEEccCCCCCCEEEEecCCC
Q 013921 85 PATFP-EGLGLVAQRDIAKNEVVLEVPMKF 113 (434)
Q Consensus 85 ~~~~~-~GrGl~A~~~I~~ge~ll~IP~~~ 113 (434)
+..+. .|||++|+..++.||.|+.---++
T Consensus 260 ~~~~dgKGRGv~a~~~F~rgdFVVEY~Gdl 289 (392)
T KOG1085|consen 260 EVYKDGKGRGVRAKVNFERGDFVVEYRGDL 289 (392)
T ss_pred EEeeccccceeEeecccccCceEEEEecce
Confidence 33344 499999999999999998765554
No 17
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=28.46 E-value=32 Score=24.80 Aligned_cols=15 Identities=40% Similarity=0.490 Sum_probs=10.9
Q ss_pred cEEEEccCCCCCCEE
Q 013921 92 LGLVAQRDIAKNEVV 106 (434)
Q Consensus 92 rGl~A~~~I~~ge~l 106 (434)
+-++|+++|++|+.|
T Consensus 2 ~vvVA~~di~~G~~i 16 (63)
T PF08666_consen 2 RVVVAARDIPAGTVI 16 (63)
T ss_dssp SEEEESSTB-TT-BE
T ss_pred cEEEEeCccCCCCEE
Confidence 358999999999987
No 18
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=24.85 E-value=69 Score=21.02 Aligned_cols=17 Identities=24% Similarity=0.562 Sum_probs=14.5
Q ss_pred HHHHHHHHHhCCCCCCC
Q 013921 64 VETFWQWLRDQKVVSPK 80 (434)
Q Consensus 64 ~~~f~~Wl~~~G~~~~~ 80 (434)
-.+|.+||.++|+..++
T Consensus 6 ~~~L~~wL~~~gi~~~~ 22 (38)
T PF10281_consen 6 DSDLKSWLKSHGIPVPK 22 (38)
T ss_pred HHHHHHHHHHcCCCCCC
Confidence 36789999999998876
No 19
>PF09652 Cas_VVA1548: Putative CRISPR-associated protein (Cas_VVA1548); InterPro: IPR013443 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 95 amino acids found exclusively in species with CRISPR repeats. In all bacterial species that contain this entry, the genes encoding the proteins are in the midst of a cluster of cas genes.
Probab=24.78 E-value=62 Score=26.11 Aligned_cols=40 Identities=18% Similarity=0.309 Sum_probs=25.3
Q ss_pred HHHHHHHHHhCCCCCCCCCeeecccCCccEEEEccCCCCCCEEE-EecCCC
Q 013921 64 VETFWQWLRDQKVVSPKSPIRPATFPEGLGLVAQRDIAKNEVVL-EVPMKF 113 (434)
Q Consensus 64 ~~~f~~Wl~~~G~~~~~~~v~~~~~~~GrGl~A~~~I~~ge~ll-~IP~~~ 113 (434)
....++|++++|+.++. +..... ..+|++|++|+ ++|.++
T Consensus 6 H~GAieW~~~qg~~iD~--~v~Hld--------~~~i~~GD~ViGtLPvhL 46 (93)
T PF09652_consen 6 HPGAIEWAKQQGIQIDH--FVDHLD--------PADIQPGDVVIGTLPVHL 46 (93)
T ss_pred cccHHHHHHHhCCCcce--eeccCC--------HHHccCCCEEEEeCcHHH
Confidence 34567999999998776 221111 56677777654 556554
No 20
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=23.90 E-value=52 Score=34.63 Aligned_cols=121 Identities=17% Similarity=0.118 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHhCCCCCCCCCeeecccC-CccEEEEc-cCCCCCCEEEEecCCCccCccccccch-hhhhhcCCChhHHH
Q 013921 62 AQVETFWQWLRDQKVVSPKSPIRPATFP-EGLGLVAQ-RDIAKNEVVLEVPMKFWINPDTVAASE-IGSLCSGLKPWISV 138 (434)
Q Consensus 62 ~~~~~f~~Wl~~~G~~~~~~~v~~~~~~-~GrGl~A~-~~I~~ge~ll~IP~~~~ls~~~~~~~~-~~~~~~~l~~~~~L 138 (434)
..+..|++|...+|+..+.. +...... .|.+.+|. ..+...+.+..+....-...-...... .+..+. .|..+
T Consensus 4 ~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~ 79 (472)
T KOG1337|consen 4 DVLSALLRWAQCNGISLSSS-LDLRPDELKGLVRWAASESIASSENIKSLKFWLTGNGLSSSKSSLPGNDID---EWPLL 79 (472)
T ss_pred hHHHHhhhHHhccCccCCcc-cccCccccCcceeeeecccCCCccccccceeccccCCcchhhhcccccccc---ccchh
Confidence 67889999999999998872 4433322 37777777 555555555444444333332222111 111111 11111
Q ss_pred ---------HHHHHHHhcCCCCCcHHHHhhcCCCCCCccccCHhHHhhcCCCchHHH
Q 013921 139 ---------ALFLIREKKKEDSPWRVYLDILPECTDSTVFWSEEELVELQGTQLLST 186 (434)
Q Consensus 139 ---------al~Ll~E~~~~~S~w~pYl~~LP~~~~~pl~w~~~el~~L~gt~l~~~ 186 (434)
.+.+.-.+....++|.+|.+.+|....++++|...+.....+.+....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~s~w~~~i~~ 136 (472)
T KOG1337|consen 80 VSIRLIKGEKLLLVPPLLLLIAKRKPYNDLLPIALALFLLLEWAHGEISKWKPYIST 136 (472)
T ss_pred hhhhhhhhhhhccCCchhhhccccccCccccHHHHHHHHHHhhhccccccchhhhhh
Confidence 111111123346788899999886667778877665544555544433
No 21
>TIGR02059 swm_rep_I cyanobacterial long protein repeat. This domain appears in 29 copies in a large (10000 amino protein in Synechococcus sp. WH8102 associated with a novel flagellar system, as one of three different repeats. Similar domains are found in two different large (<3500) proteins of Synechocystis PCC6803.
Probab=23.57 E-value=88 Score=25.64 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=21.7
Q ss_pred CCceEEEEeCCCCCCCCeEEeccCC
Q 013921 274 RDLLFSLRTPVPVKAGEQVLIQYDL 298 (434)
Q Consensus 274 ~~~~~~l~a~r~i~~GeEv~i~YG~ 298 (434)
....+.|.-.+.|..||||.++|-.
T Consensus 73 s~ktVTLTL~~~V~~Gq~VTVsYt~ 97 (101)
T TIGR02059 73 SNTTITLTLAQVVEDGDEVTLSYTK 97 (101)
T ss_pred cccEEEEEecccccCCCEEEEEeeC
Confidence 3457899999999999999999964
No 22
>TIGR02620 cas_VVA1548 putative CRISPR-associated protein, VVA1548 family. This model represents a conserved domain of about 95 amino acids exclusively in species with CRISPR (Clustered Regularly Interspaced Short Palidromic Repeats). In all bacterial species with members so far (Vibrio vulnificus YJ016, Mannheimia succiniciproducens MBEL55E, and Nitrosomonas europaea ATCC 19718) and but not in the archaeon Methanothermobacter thermautotrophicus str. Delta H, the gene for this protein is in the midst of a cluster of Cas protein gene near CRISPR repeats.
Probab=22.29 E-value=69 Score=25.82 Aligned_cols=39 Identities=21% Similarity=0.384 Sum_probs=23.3
Q ss_pred HHHHHHHHhCCCCCCCCCeeecccCCccEEEEccCCCCCCEEE-EecCCC
Q 013921 65 ETFWQWLRDQKVVSPKSPIRPATFPEGLGLVAQRDIAKNEVVL-EVPMKF 113 (434)
Q Consensus 65 ~~f~~Wl~~~G~~~~~~~v~~~~~~~GrGl~A~~~I~~ge~ll-~IP~~~ 113 (434)
..-++|++++|..++. +.....+ .+|.+|++|+ ++|.++
T Consensus 7 ~Ga~eW~~~qG~~iD~--~v~HLd~--------~~i~~GD~ViGtLPv~L 46 (93)
T TIGR02620 7 SGAQEWLSQQGIQIDH--FVDHLDP--------IDISQGDKVIGTLPVSL 46 (93)
T ss_pred ccHHHHHHhcCCccce--eecccCH--------HHhcCCCEEEEeCCHHH
Confidence 3457999999998776 2222111 4566666554 455543
No 23
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=20.08 E-value=41 Score=35.38 Aligned_cols=45 Identities=24% Similarity=0.391 Sum_probs=32.1
Q ss_pred cccccCCCCCCCCCceEEecCCCccCCCceEEEEeCCCCCCCCeEEeccCC
Q 013921 248 ADLINHSPGITTEDYAYEIKGAGLFSRDLLFSLRTPVPVKAGEQVLIQYDL 298 (434)
Q Consensus 248 ~Dm~NH~~~~~~~~~~~~~~~~g~~~~~~~~~l~a~r~i~~GeEv~i~YG~ 298 (434)
-++.||+..+......|.+. .+..+.+.+.+.++.|+|++.+|-.
T Consensus 372 sr~~nh~~~~~v~~~k~~~~------~~t~~~~~a~~~i~~g~e~t~~~n~ 416 (463)
T KOG1081|consen 372 SRFLNHSCQPNVETEKWQVI------GDTRVGLFAPRQIEAGEELTFNYNG 416 (463)
T ss_pred hhhhcccCCCceeechhhee------cccccccccccccccchhhhheeec
Confidence 45689996654433344432 2456788999999999999999963
Done!