Query 013922
Match_columns 434
No_of_seqs 165 out of 1613
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 08:44:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013922.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013922hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0544 Tig FKBP-type peptidyl 100.0 4.2E-66 9.1E-71 534.9 37.9 318 90-433 1-322 (441)
2 PRK01490 tig trigger factor; P 100.0 4.3E-62 9.4E-67 508.6 40.3 317 90-432 1-321 (435)
3 TIGR00115 tig trigger factor. 100.0 7.9E-60 1.7E-64 487.8 38.6 308 102-433 1-312 (408)
4 PF05697 Trigger_N: Bacterial 100.0 3.5E-29 7.6E-34 224.1 16.5 136 90-236 1-140 (145)
5 PF00254 FKBP_C: FKBP-type pep 99.1 5.1E-10 1.1E-14 92.3 9.5 85 258-348 2-94 (94)
6 COG1047 SlpA FKBP-type peptidy 98.9 7.4E-09 1.6E-13 94.7 10.5 87 260-352 2-142 (174)
7 PRK15095 FKBP-type peptidyl-pr 98.9 1.3E-08 2.8E-13 92.5 10.4 86 260-351 4-144 (156)
8 PRK10737 FKBP-type peptidyl-pr 98.8 1.7E-08 3.6E-13 94.7 10.4 95 260-364 2-149 (196)
9 TIGR03516 ppisom_GldI peptidyl 98.5 6.8E-07 1.5E-11 82.9 9.8 86 260-351 85-176 (177)
10 KOG0549 FKBP-type peptidyl-pro 98.5 1.1E-06 2.4E-11 80.6 10.0 89 258-352 82-177 (188)
11 COG0545 FkpA FKBP-type peptidy 98.4 1.4E-06 3E-11 81.5 9.8 85 259-351 114-205 (205)
12 KOG0544 FKBP-type peptidyl-pro 98.4 2.1E-06 4.4E-11 70.6 8.8 84 261-350 17-107 (108)
13 PRK10902 FKBP-type peptidyl-pr 98.4 2E-06 4.4E-11 84.7 10.6 85 260-352 160-250 (269)
14 PF05698 Trigger_C: Bacterial 98.4 9.5E-07 2.1E-11 79.5 7.5 61 372-432 1-61 (162)
15 KOG0552 FKBP-type peptidyl-pro 98.2 8.2E-06 1.8E-10 77.9 9.1 88 259-351 133-226 (226)
16 PRK11570 peptidyl-prolyl cis-t 98.0 3.4E-05 7.3E-10 73.3 10.1 84 260-351 116-206 (206)
17 PRK04980 hypothetical protein; 91.7 0.82 1.8E-05 38.7 7.2 44 337-383 44-87 (102)
18 KOG0543 FKBP-type peptidyl-pro 89.7 2.1 4.6E-05 44.4 9.6 86 261-353 101-192 (397)
19 cd06552 ASCH_yqfb_like ASC-1 h 89.2 1.6 3.5E-05 36.1 7.0 42 340-383 42-83 (100)
20 PF01272 GreA_GreB: Transcript 77.3 5.5 0.00012 31.5 5.0 32 307-351 45-76 (77)
21 PRK12450 foldase protein PrsA; 76.6 17 0.00037 36.6 9.5 98 302-425 200-299 (309)
22 PRK01885 greB transcription el 73.9 39 0.00085 30.7 10.3 32 307-351 124-155 (157)
23 KOG0543 FKBP-type peptidyl-pro 72.6 5.3 0.00011 41.6 4.7 55 260-320 8-63 (397)
24 TIGR01461 greB transcription e 72.3 21 0.00045 32.5 8.1 32 307-351 122-153 (156)
25 PRK05892 nucleoside diphosphat 72.2 34 0.00074 31.1 9.5 33 307-352 124-156 (158)
26 TIGR01462 greA transcription e 70.1 29 0.00063 31.2 8.5 20 306-325 119-138 (151)
27 PRK02998 prsA peptidylprolyl i 69.7 43 0.00093 33.2 10.4 92 302-422 187-278 (283)
28 cd06541 ASCH ASC-1 homology or 69.2 16 0.00035 30.7 6.2 49 339-387 43-92 (105)
29 PRK04405 prsA peptidylprolyl i 68.2 40 0.00087 33.8 9.9 93 302-424 199-291 (298)
30 PRK05753 nucleoside diphosphat 67.5 30 0.00066 30.7 7.9 34 306-351 93-126 (137)
31 PRK00226 greA transcription el 67.5 28 0.0006 31.4 7.8 32 307-351 125-156 (157)
32 PRK14720 transcript cleavage f 66.9 35 0.00076 39.5 10.1 36 307-355 870-905 (906)
33 COG2411 Uncharacterized conser 62.7 27 0.0006 32.3 6.7 58 313-384 33-90 (188)
34 PRK03002 prsA peptidylprolyl i 61.8 60 0.0013 32.2 9.7 91 302-423 189-279 (285)
35 cd06553 ASCH_Ef3133_like ASC-1 59.1 47 0.001 29.2 7.4 52 336-388 54-105 (127)
36 PRK06342 transcription elongat 55.9 58 0.0013 29.7 7.7 17 307-323 133-149 (160)
37 PRK01326 prsA foldase protein 54.1 1.3E+02 0.0028 30.2 10.7 99 303-425 198-296 (310)
38 PRK03095 prsA peptidylprolyl i 51.1 1.3E+02 0.0028 29.9 10.0 92 302-423 185-276 (287)
39 PRK00059 prsA peptidylprolyl i 49.4 74 0.0016 32.0 8.2 81 302-413 251-331 (336)
40 PF06857 ACP: Malonate decarbo 38.3 1.2E+02 0.0027 24.8 6.3 50 85-134 11-61 (87)
41 PRK12907 secY preprotein trans 37.4 26 0.00056 37.2 2.7 37 106-148 330-366 (434)
42 PRK06330 transcript cleavage f 36.1 1.6E+02 0.0034 33.4 8.6 19 306-324 685-703 (718)
43 TIGR02933 nifM_nitrog nitrogen 34.9 1.5E+02 0.0033 28.8 7.5 71 302-399 184-254 (256)
44 TIGR02920 acc_sec_Y2 accessory 30.3 84 0.0018 32.9 5.1 36 108-149 297-332 (395)
45 COG0782 Uncharacterized conser 27.8 89 0.0019 28.2 4.2 32 307-351 118-149 (151)
46 TIGR00967 3a0501s007 preprotei 25.7 56 0.0012 34.3 2.9 37 107-149 315-351 (410)
47 PF00344 SecY: SecY translocas 25.3 83 0.0018 32.1 4.0 42 127-169 278-319 (346)
48 COG0199 RpsN Ribosomal protein 24.6 45 0.00098 25.6 1.4 18 119-136 42-59 (61)
49 CHL00161 secY preprotein trans 24.4 94 0.002 32.8 4.3 37 107-149 317-353 (417)
50 COG3097 Uncharacterized protei 22.2 1.1E+02 0.0023 25.6 3.2 41 340-383 48-88 (106)
51 COG0201 SecY Preprotein transl 22.2 1.5E+02 0.0032 31.7 5.1 23 127-149 348-370 (436)
52 PRK09204 secY preprotein trans 21.0 71 0.0015 33.8 2.6 35 108-148 330-364 (426)
53 PRK13253 citrate lyase subunit 20.8 3.9E+02 0.0085 22.2 6.4 48 87-134 14-62 (92)
54 PF10884 DUF2683: Protein of u 20.7 1.1E+02 0.0024 24.7 3.0 25 356-380 46-78 (80)
55 TIGR03595 Obg_CgtA_exten Obg f 20.6 99 0.0022 24.0 2.7 29 242-270 35-63 (69)
56 PRK08568 preprotein translocas 20.0 1.3E+02 0.0028 32.2 4.3 23 127-149 379-402 (462)
No 1
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-66 Score=534.89 Aligned_cols=318 Identities=29% Similarity=0.496 Sum_probs=296.1
Q ss_pred cEEEEEeCCCceEEEEEEEchhhHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHhhChHHHHHHHHHHHHHhhHHHHH
Q 013922 90 IEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAM 169 (434)
Q Consensus 90 m~V~~e~~~~~~~~l~V~v~~~ev~~~~~kal~~~~k~akIPGFRkGKvP~~iI~~~yG~~~i~~e~~~~li~~~~~~ai 169 (434)
|+|++++++++.++++|+||++.+++++++++++++++++||||||||||++||+++|| .++++++++++++.+|.+++
T Consensus 1 M~v~~e~~~~~~~~l~v~vp~~~~~~~~~~~~~~~~k~v~IpGFRkGKvP~~ii~~ryg-~~v~~d~~~~ll~~~~~~a~ 79 (441)
T COG0544 1 MKVTVEKLEGLEVRLTVEVPAEEIKKALDKALKKLAKKVKIPGFRKGKVPRKVIEQRYG-EAVRQDVLNELLPEAFEEAI 79 (441)
T ss_pred CCeeeeecCCcEEEEEEEECHHHHHHHHHHHHHHHHhhCcCCCCCCCCCCHHHHHHHHh-HHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999 59999999999999999999
Q ss_pred HhhhcccCCcccccccccchhhhccCCCCceEEEEEEeeecceecCCCCCcceeEEEEe----cchhhHHHHHHHHHHHH
Q 013922 170 TSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVE----IDNDTAAQQAAEEELRR 245 (434)
Q Consensus 170 ~e~~~~~l~~~~~i~~~~~~~~~~~~~~~~f~f~v~~ev~Pev~l~~~~~yk~i~v~v~----~dedv~~~~~~e~~L~~ 245 (434)
++.++.|++.| .+. + ..++++++|+|++.|+|+|+|+++ ||++|+|+++ +++||+. .|+.
T Consensus 80 ~e~~~~~~~~p-~~~--~----~~~e~~~~~~f~~~~ev~Pev~l~---d~~~i~v~~~~~ev~d~dvd~------~L~~ 143 (441)
T COG0544 80 KEEGLKPAGQP-EIE--I----TEFEKGEDFEFTAEVEVYPEVELG---DYKGIEVEKPVVEVTDEDVDE------ELEK 143 (441)
T ss_pred HHhCcCcCCCC-Ccc--c----ccccCCCceEEEEEEEEeeceecC---ccccceeecCCcccCHHHHHH------HHHH
Confidence 99999998875 221 1 246778889999999999999997 9999999986 3455554 6788
Q ss_pred HHhhcCccccccCCCCCcCcEEEEEEEEEeeccCCCCCcccCCCcccCEEEEecCCCCCCccHHHHhcCCCCCceEEEEE
Q 013922 246 RHKSLGSLKIVTDRGLQVGDIAIVDISATTIDEDESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRL 325 (434)
Q Consensus 246 ~~~~~a~~~~v~dr~~q~GD~V~vd~~~~~~~~d~~~G~~i~~~~~~~~~l~lg~~~~~~p~fe~~LiG~k~Ge~~~~~i 325 (434)
.++++++|.++.++ ++.||.|+|||.|+ .||++|+|++.++|.|.+| .++|+|||+++|+|||+||+++|++
T Consensus 144 l~~~~a~~~~~e~~-a~~gD~v~IDf~g~------iDg~~fegg~ae~~~l~lG-s~~fipgFe~~LvG~k~Ge~k~i~v 215 (441)
T COG0544 144 LRKRFATLEPVEGA-AENGDRVTIDFEGS------VDGEEFEGGKAENFSLELG-SGRFIPGFEDQLVGMKAGEEKDIKV 215 (441)
T ss_pred HHHhcCcccccccc-cccCCEEEEEEEEE------EcCeeccCccccCeEEEEc-CCCchhhHHhhhccCcCCCeeEEEE
Confidence 88889999887555 99999999999998 6899999999999999999 5799999999999999999999999
Q ss_pred cCCCCCCCCCCCCceeEEEEEEEEeecCCCCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013922 326 AFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLY 405 (434)
Q Consensus 326 ~fPed~~~~~laGk~v~f~V~Ik~Ik~~~lPELdDefak~l~~~~~Tleelr~~Ike~l~~~~~~~~~~~~~~~ll~~L~ 405 (434)
+||++|+.++|+||.++|+|+|++|+++++||||||||++++... |+++||+.||++|+.+.+.+.++..+++++++|.
T Consensus 216 tFP~dy~a~~LaGK~a~F~V~vkeVk~~elpEldDEfAk~~~~~~-tL~~Lk~~~r~~le~~~~~~~~~~~~~~~~~~L~ 294 (441)
T COG0544 216 TFPEDYHAEELAGKEATFKVKVKEVKKRELPELDDEFAKKLGEED-TLEELKEKLRKNLERELKEATLEKRKEQLLDALV 294 (441)
T ss_pred EcccccchhHhCCCceEEEEEEEEEeecCCCCCCHHHHHhcCccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999996434 9999999999999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHHHHHhcc
Q 013922 406 KMVEIDIPQSLFEEQGRQLYGAQLLQMQ 433 (434)
Q Consensus 406 e~~~~dlPeslv~~e~~~~~~~~l~~lq 433 (434)
+.+.|++|++||+++++++++++++++|
T Consensus 295 e~~~~dlP~sli~~E~~~l~~~~~~~l~ 322 (441)
T COG0544 295 EANDFDLPESLVEAEIDNLLKQALQQLQ 322 (441)
T ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999886
No 2
>PRK01490 tig trigger factor; Provisional
Probab=100.00 E-value=4.3e-62 Score=508.62 Aligned_cols=317 Identities=28% Similarity=0.480 Sum_probs=292.6
Q ss_pred cEEEEEeCCCceEEEEEEEchhhHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHhhChHHHHHHHHHHHHHhhHHHHH
Q 013922 90 IEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAM 169 (434)
Q Consensus 90 m~V~~e~~~~~~~~l~V~v~~~ev~~~~~kal~~~~k~akIPGFRkGKvP~~iI~~~yG~~~i~~e~~~~li~~~~~~ai 169 (434)
|+|+++++++|++.++|+||+++|+.++++++++++++++||||||||||++||+++||+ .|++++++++++.+|.+|+
T Consensus 1 M~v~~~~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~ipGFRkGkvP~~ii~k~~g~-~i~~e~~~~li~~~~~~~i 79 (435)
T PRK01490 1 MQVTVEKLEGLERRLTITVPAEEIEKAVDKALKKLAKTVRIPGFRKGKVPRKIVEQRYGE-SVRQEALNDLLPEAYEEAI 79 (435)
T ss_pred CcceEEEcCCcEEEEEEEEcHHHHHHHHHHHHHHHHhhCcCCCccCCCCCHHHHHHHHhH-HHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999998 5999999999999999999
Q ss_pred HhhhcccCCcccccccccchhhhccCCCCceEEEEEEeeecceecCCCCCcceeEEEEe----cchhhHHHHHHHHHHHH
Q 013922 170 TSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVE----IDNDTAAQQAAEEELRR 245 (434)
Q Consensus 170 ~e~~~~~l~~~~~i~~~~~~~~~~~~~~~~f~f~v~~ev~Pev~l~~~~~yk~i~v~v~----~dedv~~~~~~e~~L~~ 245 (434)
++.+++|++.| .+. . .++.++++|+|+++|+++|+|+|+ +|++++|+++ ++++|+. .|++
T Consensus 80 ~~~~~~~~~~p-~i~----~--~~~~~~~~~~~~~~~~v~Pev~l~---~y~~i~v~~~~~~vtde~vd~------~i~~ 143 (435)
T PRK01490 80 KEEGIRPAGQP-EIE----P--TEEEKGKDLEFTAEVEVYPEVELG---DYKGLEVEKPVVEVTDEDVDE------ELER 143 (435)
T ss_pred HHcCCCcCCCC-ccc----c--cccCCCCcEEEEEEeeecCCcccC---CCCceEEEeccCCCCHHHHHH------HHHH
Confidence 99999999864 221 1 246668899999999999999997 8999999976 3456665 5778
Q ss_pred HHhhcCccccccCCCCCcCcEEEEEEEEEeeccCCCCCcccCCCcccCEEEEecCCCCCCccHHHHhcCCCCCceEEEEE
Q 013922 246 RHKSLGSLKIVTDRGLQVGDIAIVDISATTIDEDESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRL 325 (434)
Q Consensus 246 ~~~~~a~~~~v~dr~~q~GD~V~vd~~~~~~~~d~~~G~~i~~~~~~~~~l~lg~~~~~~p~fe~~LiG~k~Ge~~~~~i 325 (434)
+++++++|.++ +++++.||+|++||+++ .+|++++++..+++.+.+| .+.++|||+++|+||++||+++|++
T Consensus 144 l~~~~a~~~~~-~~~~~~gD~V~vd~~~~------~~g~~~~~~~~~~~~~~lg-~~~~~~~fee~L~G~k~Ge~~~~~~ 215 (435)
T PRK01490 144 LRKQFATLVPV-ERPAENGDRVTIDFVGS------IDGEEFEGGKAEDFSLELG-SGRFIPGFEEQLVGMKAGEEKTIDV 215 (435)
T ss_pred HHHhCCccccc-cccCCCCCEEEEEEEEE------ECCEECcCCCCCceEEEEc-CCCcchhHHHHhCCCCCCCeeEEEe
Confidence 88889999876 58999999999999998 5789999988899999999 4689999999999999999999999
Q ss_pred cCCCCCCCCCCCCceeEEEEEEEEeecCCCCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013922 326 AFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLY 405 (434)
Q Consensus 326 ~fPed~~~~~laGk~v~f~V~Ik~Ik~~~lPELdDefak~l~~~~~Tleelr~~Ike~l~~~~~~~~~~~~~~~ll~~L~ 405 (434)
+||++|+.++++|++++|+|+|++|+++.+|+|||+||++++ .++|+++||+.||++|.++.+..+++.++++|+++|+
T Consensus 216 ~~p~~~~~~~lagk~~~f~v~v~~V~~~~~pel~Defak~~~-~~~tleelk~~ik~~l~~~~~~~~~~~~~~~i~~~L~ 294 (435)
T PRK01490 216 TFPEDYHAEDLAGKEATFKVTVKEVKEKELPELDDEFAKKLG-EFETLEELKADIRKNLEREKKEAQRAKVKEAVLDALV 294 (435)
T ss_pred cCccccccccCCCCeEEEEEEEEEeccCCCCCCCHHHHHhcC-CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999884 3499999999999999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHHHHHhc
Q 013922 406 KMVEIDIPQSLFEEQGRQLYGAQLLQM 432 (434)
Q Consensus 406 e~~~~dlPeslv~~e~~~~~~~~l~~l 432 (434)
+.++|++|++||+++++.++++++.++
T Consensus 295 ~~~~~~lPe~lv~~e~~~~~~~~~~~~ 321 (435)
T PRK01490 295 ENAEIDLPEALVEQEIDRLLRQALQQG 321 (435)
T ss_pred HhCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999886554
No 3
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=100.00 E-value=7.9e-60 Score=487.84 Aligned_cols=308 Identities=28% Similarity=0.489 Sum_probs=283.3
Q ss_pred EEEEEEEchhhHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHhhChHHHHHHHHHHHHHhhHHHHHHhhhcccCCccc
Q 013922 102 VRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAMTSVTGRALRDSV 181 (434)
Q Consensus 102 ~~l~V~v~~~ev~~~~~kal~~~~k~akIPGFRkGKvP~~iI~~~yG~~~i~~e~~~~li~~~~~~ai~e~~~~~l~~~~ 181 (434)
+.++|+||+++|++++++++++++++++||||||||||++||+++||+ .++.++++++++++|.+++++.++.|++.|.
T Consensus 1 ~~l~v~v~~~~~~~~~~k~~~~~~k~~~ipGFRkGKvP~~~i~k~~g~-~i~~e~~~~li~~~~~~~~~~~~~~~~~~p~ 79 (408)
T TIGR00115 1 RKLTVEVPAEEVEEEVDKALKELAKKVKIPGFRKGKVPRSVVEKRYGK-EVRQEALNELLQEAFSEAVKEEKIRPIGQPE 79 (408)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhhCCCCCccCCCCCHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHhCCCCcCCCCc
Confidence 468999999999999999999999999999999999999999999997 6999999999999999999999999998652
Q ss_pred ccccccchhhhccCCCCceEEEEEEeeecceecCCCCCcceeEEEEe----cchhhHHHHHHHHHHHHHHhhcCcccccc
Q 013922 182 RIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVE----IDNDTAAQQAAEEELRRRHKSLGSLKIVT 257 (434)
Q Consensus 182 ~i~~~~~~~~~~~~~~~~f~f~v~~ev~Pev~l~~~~~yk~i~v~v~----~dedv~~~~~~e~~L~~~~~~~a~~~~v~ 257 (434)
+. . .++.++++|+|+++|+++|+|+|+ +|++++|+++ ++++|+. .|+++++++++|.+++
T Consensus 80 -~~-~-----~~~~~~~~~~~~~~~~v~Pev~l~---~y~~i~v~~~~~~vtde~vd~------~i~~l~~~~a~~~~~~ 143 (408)
T TIGR00115 80 -IE-V-----KEIEDGKDLEFTAEFEVYPEVELG---DYKGIEVEKPEVEVTDEDVDE------ELEKLREQNATLVPVE 143 (408)
T ss_pred -cc-c-----ccccCCCCEEEEEEEEecCceecC---CCCceEEEeccCCCCHHHHHH------HHHHHHHhCCcccccc
Confidence 21 1 246678899999999999999997 8999999986 2455554 5788888999998876
Q ss_pred CCCCCcCcEEEEEEEEEeeccCCCCCcccCCCcccCEEEEecCCCCCCccHHHHhcCCCCCceEEEEEcCCCCCCCCCCC
Q 013922 258 DRGLQVGDIAIVDISATTIDEDESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLR 337 (434)
Q Consensus 258 dr~~q~GD~V~vd~~~~~~~~d~~~G~~i~~~~~~~~~l~lg~~~~~~p~fe~~LiG~k~Ge~~~~~i~fPed~~~~~la 337 (434)
+++++.||+|++||+++ .+|+.++++..+++.+.+| .+.++|||+++|+||++||+++|+++||++|+.++++
T Consensus 144 ~~~~~~gD~V~v~~~~~------~dg~~~~~~~~~~~~~~lg-~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~~ 216 (408)
T TIGR00115 144 RRAAEKGDRVTIDFEGF------IDGEAFEGGKAENFSLELG-SGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEELA 216 (408)
T ss_pred ccccCCCCEEEEEEEEE------ECCEECcCCCCCCeEEEEC-CCCcchhHHHHhCCCCCCCeeEEEecCccccCcccCC
Confidence 67999999999999997 5789999988899999999 4789999999999999999999999999999999999
Q ss_pred CceeEEEEEEEEeecCCCCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Q 013922 338 GVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLF 417 (434)
Q Consensus 338 Gk~v~f~V~Ik~Ik~~~lPELdDefak~l~~~~~Tleelr~~Ike~l~~~~~~~~~~~~~~~ll~~L~e~~~~dlPeslv 417 (434)
|+++.|+|+|++|+++.+|+|||+||++++++++|+++||++|+++|..+++.+.+..++++|+++|++.++|++|++||
T Consensus 217 gk~~~f~v~i~~I~~~~~peldDefak~~~~~~~t~~elr~~ik~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~lPe~~v 296 (408)
T TIGR00115 217 GKEATFKVTVKEVKEKELPELDDEFAKELGEEFETLEELKADIRKNLEREKKERAKNKLKEQLLDKLVENNEFELPESLV 296 (408)
T ss_pred CCeEEEEEEEEEeccCCCCCCCHHHHHhcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 99999999999999999999999999999544899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q 013922 418 EEQGRQLYGAQLLQMQ 433 (434)
Q Consensus 418 ~~e~~~~~~~~l~~lq 433 (434)
++++++++++++.+||
T Consensus 297 ~~~~~~~~~~~~~~~~ 312 (408)
T TIGR00115 297 EQEIDRLLEQALQQLQ 312 (408)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998887765
No 4
>PF05697 Trigger_N: Bacterial trigger factor protein (TF); InterPro: IPR008881 In the Escherichia coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide chains []. This group of sequences contain the ribosomal subunit association domain.; GO: 0006457 protein folding, 0015031 protein transport; PDB: 2D3O_1 1W26_A 1P9Y_A 1OMS_C 1T11_A 3GU0_A 2NSB_A 2NSC_A 3GTY_X.
Probab=99.96 E-value=3.5e-29 Score=224.07 Aligned_cols=136 Identities=32% Similarity=0.571 Sum_probs=115.1
Q ss_pred cEEEEEeCCCceEEEEEEEchhhHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHhhChHHHHHHHHHHHHHhhHHHHH
Q 013922 90 IEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAM 169 (434)
Q Consensus 90 m~V~~e~~~~~~~~l~V~v~~~ev~~~~~kal~~~~k~akIPGFRkGKvP~~iI~~~yG~~~i~~e~~~~li~~~~~~ai 169 (434)
|+|++++.++|.+.++|+|++++++.++++++++++++++||||||||||.++|+++||.+ |+.++++++++.++.+|+
T Consensus 1 M~v~~~~~~~~~~~~~v~v~~~~~~~~~~~~l~~~~k~~~ipGFRkGK~P~~vi~~~~g~~-i~~~~~~~~~~~~~~~~~ 79 (145)
T PF05697_consen 1 MKVTVEKIEDSKVKLEVEVPAEEVEKAYEKALKELAKKVKIPGFRKGKAPRNVIEKRYGKE-IREEAIEELLQEAYEEAI 79 (145)
T ss_dssp -EEEEEEESTTEEEEEEEE-HHHHHHHHHHHHHHHHTTTTBTTS-TTSS-HHHHHHHHCHH-HHHHHHHHHHHHHHHHHH
T ss_pred CccEEEECCCcEEEEEEEECHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999985 999999999999999999
Q ss_pred HhhhcccCCcccccccccchhhhccCCCCceEEEEEEeeecceecCCCCCcceeEEEEe----cchhhHHH
Q 013922 170 TSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVE----IDNDTAAQ 236 (434)
Q Consensus 170 ~e~~~~~l~~~~~i~~~~~~~~~~~~~~~~f~f~v~~ev~Pev~l~~~~~yk~i~v~v~----~dedv~~~ 236 (434)
++.++++++.| .+. ...+.++++|+|+++|+++|+|+++ +|++++++++ ++++|+++
T Consensus 80 ~~~~~~~i~~p-~i~------~~~~~~~~~~~~~~~~~~~Pev~l~---~~~~i~v~~~~~~vtd~~V~~~ 140 (145)
T PF05697_consen 80 KEEKIKPIGDP-EIE------EKDFKEGEDFEFEVEFEVFPEVELK---DYKGIKVEKPEVEVTDEDVDEE 140 (145)
T ss_dssp HHTTS-ESSEE-EEE------EEEEETTS-EEEEEEEEE--ECEET---TCTTSEEEEEEHHHHHHHHHHH
T ss_pred HHcCCCccccc-ccc------ccccccCCCEEEEEEEEecCCcccC---CCCCceeeecccCcCHHHHHHH
Confidence 99999998764 221 1356778899999999999999997 8999999986 34555553
No 5
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.10 E-value=5.1e-10 Score=92.30 Aligned_cols=85 Identities=19% Similarity=0.362 Sum_probs=73.4
Q ss_pred CCCCCcCcEEEEEEEEEeeccCCCCCcccCCC--cccCEEEEecCCCCCCccHHHHhcCCCCCceEEEEEcCCCCCCCCC
Q 013922 258 DRGLQVGDIAIVDISATTIDEDESNVQNIPDA--ETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEH 335 (434)
Q Consensus 258 dr~~q~GD~V~vd~~~~~~~~d~~~G~~i~~~--~~~~~~l~lg~~~~~~p~fe~~LiG~k~Ge~~~~~i~fPed~~~~~ 335 (434)
++.++.||.|+++|.++. .+|+.+++. ...++.|.+|. +.++|+|+++|.||++||++.|.++++..|....
T Consensus 2 ~~~~~~gd~V~i~y~~~~-----~~g~~~~~~~~~~~~~~~~~g~-~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~ 75 (94)
T PF00254_consen 2 PRTPKEGDTVTIHYTGRL-----EDGKVFDSSYQEGEPFEFRLGS-GQVIPGLEEALIGMKVGEKREFYVPPELAYGEKG 75 (94)
T ss_dssp SSSBSTTSEEEEEEEEEE-----TTSEEEEETTTTTSEEEEETTS-SSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTT
T ss_pred CccCCCCCEEEEEEEEEE-----CCCcEEEEeeecCcceeeeecc-CccccchhhhcccccCCCEeeeEeCChhhcCccc
Confidence 356899999999999983 478888877 56789999994 6799999999999999999999999999998776
Q ss_pred C------CCceeEEEEEEE
Q 013922 336 L------RGVQAQFTVECR 348 (434)
Q Consensus 336 l------aGk~v~f~V~Ik 348 (434)
. +++++.|+|++.
T Consensus 76 ~~~~~ip~~~~l~f~Iell 94 (94)
T PF00254_consen 76 LEPPKIPPNSTLVFEIELL 94 (94)
T ss_dssp BCTTTBTTTSEEEEEEEEE
T ss_pred cCCCCcCCCCeEEEEEEEC
Confidence 5 448999999874
No 6
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=7.4e-09 Score=94.74 Aligned_cols=87 Identities=16% Similarity=0.310 Sum_probs=73.6
Q ss_pred CCCcCcEEEEEEEEEeeccCCCCCcccCCCc--ccCEEEEecCCCCCCccHHHHhcCCCCCceEEEEEcCCCCC------
Q 013922 260 GLQVGDIAIVDISATTIDEDESNVQNIPDAE--TKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESW------ 331 (434)
Q Consensus 260 ~~q~GD~V~vd~~~~~~~~d~~~G~~i~~~~--~~~~~l~lg~~~~~~p~fe~~LiG~k~Ge~~~~~i~fPed~------ 331 (434)
.++.||+|.|+|+.+. .+|+.++.+. ..++.+.+| .+.++|+|+++|+||.+||++++.++-.+.|
T Consensus 2 ~i~k~~~V~i~Y~~~~-----~dg~v~Dtt~e~~~P~~~i~G-~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~~~ 75 (174)
T COG1047 2 KIEKGDVVSLHYTLKV-----EDGEVVDTTDENYGPLTFIVG-AGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYDPD 75 (174)
T ss_pred cccCCCEEEEEEEEEe-----cCCcEEEcccccCCCeEEEec-CCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCChH
Confidence 4789999999999984 4588887763 468999999 5789999999999999999999999833344
Q ss_pred ----------------------------------------------CCCCCCCceeEEEEEEEEeec
Q 013922 332 ----------------------------------------------RQEHLRGVQAQFTVECRELFY 352 (434)
Q Consensus 332 ----------------------------------------------~~~~laGk~v~f~V~Ik~Ik~ 352 (434)
.+..||||++.|+|+|.+|..
T Consensus 76 lvq~vp~~~F~~~~~~~vGm~~~~~~~~~~~~~~V~~V~~~~V~VDfNHpLAGktL~feveVv~v~~ 142 (174)
T COG1047 76 LVQRVPRDEFQGVGELEVGMEVEAEGGDGEIPGVVTEVSGDRVTVDFNHPLAGKTLHFEVEVVEVRE 142 (174)
T ss_pred HeEEecHHHhCcCCCCCCCcEEEEcCCCceeeEEEEEEcCCEEEEeCCCcCCCCeEEEEEEEEEEec
Confidence 267899999999999999973
No 7
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=98.87 E-value=1.3e-08 Score=92.50 Aligned_cols=86 Identities=17% Similarity=0.286 Sum_probs=72.6
Q ss_pred CCCcCcEEEEEEEEEeeccCCCCCcccCCCc--ccCEEEEecCCCCCCccHHHHhcCCCCCceEEEEEcCCCCC------
Q 013922 260 GLQVGDIAIVDISATTIDEDESNVQNIPDAE--TKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESW------ 331 (434)
Q Consensus 260 ~~q~GD~V~vd~~~~~~~~d~~~G~~i~~~~--~~~~~l~lg~~~~~~p~fe~~LiG~k~Ge~~~~~i~fPed~------ 331 (434)
.++.||+|.++|+++. .+|+.++++. ..++.|.+| .+.++|+|+++|.||++|++++|.++..+.|
T Consensus 4 ~i~~~~~V~v~Y~~~~-----~dG~v~dst~~~~~P~~f~~G-~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d~~ 77 (156)
T PRK15095 4 SVQSNSAVLVHFTLKL-----DDGSTAESTRNNGKPALFRLG-DGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPSPD 77 (156)
T ss_pred ccCCCCEEEEEEEEEe-----CCCCEEEECCCCCCCEEEEeC-CCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCChH
Confidence 5789999999999983 4688888764 378999999 5689999999999999999999999822222
Q ss_pred -----------------------------------------------CCCCCCCceeEEEEEEEEee
Q 013922 332 -----------------------------------------------RQEHLRGVQAQFTVECRELF 351 (434)
Q Consensus 332 -----------------------------------------------~~~~laGk~v~f~V~Ik~Ik 351 (434)
.+..|||+++.|+++|.+|.
T Consensus 78 ~v~~vp~~~f~~~~~~~~G~~~~~~~~~G~~~~~~V~~i~~~~v~vD~NHPLAGk~L~f~v~i~~v~ 144 (156)
T PRK15095 78 LIQYFSRRDFMDAGEPEIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDIEVLEID 144 (156)
T ss_pred HEEEecHHHCCcccCCCCCCEEEEECCCCCEEEEEEEEEcCCEEEEECCCcCCCCEEEEEEEEEEec
Confidence 26789999999999999996
No 8
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=98.85 E-value=1.7e-08 Score=94.74 Aligned_cols=95 Identities=12% Similarity=0.218 Sum_probs=77.6
Q ss_pred CCCcCcEEEEEEEEEeeccCCCCCcccCCCc-ccCEEEEecCCCCCCccHHHHhcCCCCCceEEEEEcCCCCC-------
Q 013922 260 GLQVGDIAIVDISATTIDEDESNVQNIPDAE-TKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESW------- 331 (434)
Q Consensus 260 ~~q~GD~V~vd~~~~~~~~d~~~G~~i~~~~-~~~~~l~lg~~~~~~p~fe~~LiG~k~Ge~~~~~i~fPed~------- 331 (434)
.++.|++|+|+|+.+. .+|+.++.+. ..++.|.+| .+.++|+|+++|+||++|++++|+++-.+.|
T Consensus 2 kI~~~~vV~l~Y~l~~-----~dG~v~dst~~~~Pl~~~~G-~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d~~l 75 (196)
T PRK10737 2 KVAKDLVVSLAYQVRT-----EDGVLVDESPVSAPLDYLHG-HGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (196)
T ss_pred ccCCCCEEEEEEEEEe-----CCCCEEEecCCCCCeEEEeC-CCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCChHH
Confidence 3678999999999983 4688888764 589999999 5789999999999999999999999722222
Q ss_pred ---------------------------------------------CCCCCCCceeEEEEEEEEeecCCCCCCCHHHHh
Q 013922 332 ---------------------------------------------RQEHLRGVQAQFTVECRELFYRDLPKLDDSLAG 364 (434)
Q Consensus 332 ---------------------------------------------~~~~laGk~v~f~V~Ik~Ik~~~lPELdDefak 364 (434)
.+..|||+++.|+|+|.+|. +.-.+|++.
T Consensus 76 V~~vpr~~F~~~~~l~~G~~~~~~~~~G~~~~~V~ev~~d~V~vD~NHPLAG~~L~F~veV~~vr----~at~eEi~~ 149 (196)
T PRK10737 76 VQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLKFNVEVVAIR----EATEEELAH 149 (196)
T ss_pred EEEecHHHCCCccCCCCCCEEEEeCCCCcEEEEEEEEcCCEEEEECCCcCCCCEEEEEEEEEEec----cCCHHHHhc
Confidence 26689999999999999996 455566664
No 9
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=98.49 E-value=6.8e-07 Score=82.90 Aligned_cols=86 Identities=14% Similarity=0.179 Sum_probs=70.6
Q ss_pred CCCcCcEEEEEEEEEeeccCCCCCcccCCCc-ccCEEEEecCCCCCCccHHHHhcCCCCCceEEEEEcCCCCCCCCCC--
Q 013922 260 GLQVGDIAIVDISATTIDEDESNVQNIPDAE-TKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHL-- 336 (434)
Q Consensus 260 ~~q~GD~V~vd~~~~~~~~d~~~G~~i~~~~-~~~~~l~lg~~~~~~p~fe~~LiG~k~Ge~~~~~i~fPed~~~~~l-- 336 (434)
.++.||.|.++|.+.. .+|+.+.+.. ..++.+.+| .+.++|||+++|.||++||+.+|.++....|+....
T Consensus 85 ~p~~gd~V~v~Y~~~~-----~dG~v~~ss~~~~P~~f~vg-~~~vi~Gl~e~L~~Mk~Ge~~~~~iP~~~AYG~~g~~~ 158 (177)
T TIGR03516 85 TPEFGDLVTFEYDIRA-----LDGDVIYSEEELGPQTYKVD-QQDLFSGLRDGLKLMKEGETATFLFPSHKAYGYYGDQN 158 (177)
T ss_pred cCCCCCEEEEEEEEEe-----CCCCEEEeCCCCCCEEEEeC-CcchhHHHHHHHcCCCCCCEEEEEECHHHcCCCCCCCC
Confidence 4688999999999984 5788877654 357889998 467999999999999999999999986666765433
Q ss_pred ---CCceeEEEEEEEEee
Q 013922 337 ---RGVQAQFTVECRELF 351 (434)
Q Consensus 337 ---aGk~v~f~V~Ik~Ik 351 (434)
.+.++.|+|++.+|+
T Consensus 159 ~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 159 KIGPNLPIISTVTLLNIK 176 (177)
T ss_pred CcCcCCcEEEEEEEEEec
Confidence 557899999999985
No 10
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1.1e-06 Score=80.55 Aligned_cols=89 Identities=13% Similarity=0.197 Sum_probs=73.6
Q ss_pred CCCCCcCcEEEEEEEEEeeccCCCCCcccCCC--cccCEEEEecCCCCCCccHHHHhcCCCCCceEEEEEcCCCCCCCCC
Q 013922 258 DRGLQVGDIAIVDISATTIDEDESNVQNIPDA--ETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEH 335 (434)
Q Consensus 258 dr~~q~GD~V~vd~~~~~~~~d~~~G~~i~~~--~~~~~~l~lg~~~~~~p~fe~~LiG~k~Ge~~~~~i~fPed~~~~~ 335 (434)
...++.||.+.++|++.. +||..|+++ .+++|+|.+| .+++++|++.+|.||-+||.+.+.|+.--.|....
T Consensus 82 ~~kak~GD~l~~HY~g~l-----eDGt~fdSS~~rg~P~~f~LG-~gqVIkG~Dqgl~gMCvGEkRkl~IPp~LgYG~~G 155 (188)
T KOG0549|consen 82 PEKAKKGDTLHVHYTGSL-----EDGTKFDSSYSRGAPFTFTLG-TGQVIKGWDQGLLGMCVGEKRKLIIPPHLGYGERG 155 (188)
T ss_pred cccccCCCEEEEEEEEEe-----cCCCEEeeeccCCCCEEEEeC-CCceeccHhHHhhhhCcccceEEecCccccCccCC
Confidence 457889999999999973 689998875 3468999999 58999999999999999999999998555676544
Q ss_pred CCC-----ceeEEEEEEEEeec
Q 013922 336 LRG-----VQAQFTVECRELFY 352 (434)
Q Consensus 336 laG-----k~v~f~V~Ik~Ik~ 352 (434)
..+ ....|+|++.+|.+
T Consensus 156 ~~~~IP~~A~LiFdiELv~i~~ 177 (188)
T KOG0549|consen 156 APPKIPGDAVLIFDIELVKIER 177 (188)
T ss_pred CCCCCCCCeeEEEEEEEEEeec
Confidence 322 47799999999965
No 11
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.4e-06 Score=81.47 Aligned_cols=85 Identities=16% Similarity=0.286 Sum_probs=72.8
Q ss_pred CCCCcCcEEEEEEEEEeeccCCCCCcccCCC--cccCEEEEecCCCCCCccHHHHhcCCCCCceEEEEEcCCCCCCCCCC
Q 013922 259 RGLQVGDIAIVDISATTIDEDESNVQNIPDA--ETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHL 336 (434)
Q Consensus 259 r~~q~GD~V~vd~~~~~~~~d~~~G~~i~~~--~~~~~~l~lg~~~~~~p~fe~~LiG~k~Ge~~~~~i~fPed~~~~~l 336 (434)
..+..||.|+++|+|+. .||+.|++. ..+++.|.+| .+||||.++|.||++|+++.+.|+-+-.|+....
T Consensus 114 ~~~~~~~~V~vhY~G~l-----~~G~vFDsS~~rg~p~~f~l~---~vI~Gw~egl~~M~vG~k~~l~IP~~laYG~~g~ 185 (205)
T COG0545 114 AAPKKGDTVTVHYTGTL-----IDGTVFDSSYDRGQPAEFPLG---GVIPGWDEGLQGMKVGGKRKLTIPPELAYGERGV 185 (205)
T ss_pred CCCCCCCEEEEEEEEec-----CCCCccccccccCCCceeecC---CeeehHHHHHhhCCCCceEEEEeCchhccCcCCC
Confidence 45778999999999984 689999886 4588999887 5999999999999999999999987778887776
Q ss_pred CC-----ceeEEEEEEEEee
Q 013922 337 RG-----VQAQFTVECRELF 351 (434)
Q Consensus 337 aG-----k~v~f~V~Ik~Ik 351 (434)
.| .+..|+|++.+|+
T Consensus 186 ~g~Ippns~LvFeVeLl~v~ 205 (205)
T COG0545 186 PGVIPPNSTLVFEVELLDVK 205 (205)
T ss_pred CCCCCCCCeEEEEEEEEecC
Confidence 55 6899999998874
No 12
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=2.1e-06 Score=70.57 Aligned_cols=84 Identities=15% Similarity=0.273 Sum_probs=70.4
Q ss_pred CCcCcEEEEEEEEEeeccCCCCCcccCCCc--ccCEEEEecCCCCCCccHHHHhcCCCCCceEEEEEcCCCCCCCCCCC-
Q 013922 261 LQVGDIAIVDISATTIDEDESNVQNIPDAE--TKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLR- 337 (434)
Q Consensus 261 ~q~GD~V~vd~~~~~~~~d~~~G~~i~~~~--~~~~~l~lg~~~~~~p~fe~~LiG~k~Ge~~~~~i~fPed~~~~~la- 337 (434)
.+.||.|+++|+++. .||+.|++.. +++|.|.+|. +.++.|+++.+..|++||...+++.-+=.|......
T Consensus 17 pK~Gqtvt~hYtg~L-----~dG~kfDSs~dr~kPfkf~IGk-geVIkGwdegv~qmsvGekakLti~pd~aYG~~G~p~ 90 (108)
T KOG0544|consen 17 PKKGQTVTVHYTGTL-----QDGKKFDSSRDRGKPFKFKIGK-GEVIKGWDEGVAQMSVGEKAKLTISPDYAYGPRGHPG 90 (108)
T ss_pred CCCCCEEEEEEEeEe-----cCCcEeecccccCCCeeEEecC-cceeechhhcchhccccccceeeeccccccCCCCCCC
Confidence 678999999999984 6899998864 4899999994 789999999999999999999999854466554443
Q ss_pred ----CceeEEEEEEEEe
Q 013922 338 ----GVQAQFTVECREL 350 (434)
Q Consensus 338 ----Gk~v~f~V~Ik~I 350 (434)
..+..|+|++.+|
T Consensus 91 ~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 91 GIPPNATLVFDVELLKV 107 (108)
T ss_pred ccCCCcEEEEEEEEEec
Confidence 3689999999876
No 13
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=98.38 E-value=2e-06 Score=84.70 Aligned_cols=85 Identities=15% Similarity=0.286 Sum_probs=68.7
Q ss_pred CCCcCcEEEEEEEEEeeccCCCCCcccCCCc--ccCEEEEecCCCCCCccHHHHhcCCCCCceEEEEEcCCCCCCCCCCC
Q 013922 260 GLQVGDIAIVDISATTIDEDESNVQNIPDAE--TKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLR 337 (434)
Q Consensus 260 ~~q~GD~V~vd~~~~~~~~d~~~G~~i~~~~--~~~~~l~lg~~~~~~p~fe~~LiG~k~Ge~~~~~i~fPed~~~~~la 337 (434)
.++.||.|+|+|.++. .+|+.|++.. ..++.|.++ .++|||+++|.||++|++..|.++.+..|+.....
T Consensus 160 ~p~~gD~V~V~Y~g~l-----~dG~vfdss~~~g~p~~f~l~---~vipG~~EaL~~Mk~Gek~~l~IP~~laYG~~g~~ 231 (269)
T PRK10902 160 APKDSDTVVVNYKGTL-----IDGKEFDNSYTRGEPLSFRLD---GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVP 231 (269)
T ss_pred CCCCCCEEEEEEEEEe-----CCCCEeeccccCCCceEEecC---CcchHHHHHHhcCCCCcEEEEEECchhhCCCCCCC
Confidence 4578999999999983 4788887653 346666664 48999999999999999999999877788877664
Q ss_pred C----ceeEEEEEEEEeec
Q 013922 338 G----VQAQFTVECRELFY 352 (434)
Q Consensus 338 G----k~v~f~V~Ik~Ik~ 352 (434)
| .++.|+|+|.+|+.
T Consensus 232 gIppns~LvfeVeLl~V~~ 250 (269)
T PRK10902 232 GIPANSTLVFDVELLDVKP 250 (269)
T ss_pred CCCCCCcEEEEEEEEEecc
Confidence 4 45699999999974
No 14
>PF05698 Trigger_C: Bacterial trigger factor protein (TF) C-terminus; InterPro: IPR008880 In the Escherichia coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide chains []. This entry represents the C-terminal domain of bacterial trigger factor proteins, which has a multi-helical structure consisting of an irregular array of long and short helices. This domain is structurally similar to the peptide-binding domain of the bacterial porin chaperone SurA.; GO: 0006457 protein folding, 0015031 protein transport; PDB: 1T11_A 3GU0_A 3GTY_X 2NSA_A 1ZXJ_A 1W26_A.
Probab=98.37 E-value=9.5e-07 Score=79.52 Aligned_cols=61 Identities=28% Similarity=0.436 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhc
Q 013922 372 TIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQM 432 (434)
Q Consensus 372 Tleelr~~Ike~l~~~~~~~~~~~~~~~ll~~L~e~~~~dlPeslv~~e~~~~~~~~l~~l 432 (434)
|+++||+.|+++|..+.+......++++|+++|++.++|+||+++|+++++++++++..++
T Consensus 1 Tleelk~~i~~~l~~~~~~~~~~~~~~~v~~~L~~~~~~~lP~~lv~~~~~~~~~~~~~~~ 61 (162)
T PF05698_consen 1 TLEELKEKIREELEKQKKQQIEQQKREAVLDALIENSEVELPESLVEEEIERLIEQMEQQL 61 (162)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEEEE-HHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 7999999999999999999999999999999999999999999999999999999999887
No 15
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=8.2e-06 Score=77.88 Aligned_cols=88 Identities=15% Similarity=0.183 Sum_probs=74.1
Q ss_pred CCCCcCcEEEEEEEEEeeccCCCCCcccCCC-cccCEE-EEecCCCCCCccHHHHhcCCCCCceEEEEEcCCCCCCCCCC
Q 013922 259 RGLQVGDIAIVDISATTIDEDESNVQNIPDA-ETKGFH-FDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHL 336 (434)
Q Consensus 259 r~~q~GD~V~vd~~~~~~~~d~~~G~~i~~~-~~~~~~-l~lg~~~~~~p~fe~~LiG~k~Ge~~~~~i~fPed~~~~~l 336 (434)
..+..|+.|.++|.+... .+|+.|+.. ..++|. |.+| .+.+++||+..+.||++|..+.+.|+-|-.|++..+
T Consensus 133 ~~a~~G~rV~v~Y~Gkl~----~~GkvFd~~~~~kp~~~f~lg-~g~VIkG~d~gv~GMkvGGkRrviIPp~lgYg~~g~ 207 (226)
T KOG0552|consen 133 PSAKKGKRVSVRYIGKLK----GNGKVFDSNFGGKPFKLFRLG-SGEVIKGWDVGVEGMKVGGKRRVIIPPELGYGKKGV 207 (226)
T ss_pred CCCCCCCEEEEEEEEEec----CCCeEeecccCCCCccccccC-CCCCCchHHHhhhhhccCCeeEEEeCccccccccCc
Confidence 347789999999999842 378988875 457888 9999 578999999999999999999999998888987655
Q ss_pred ----CCceeEEEEEEEEee
Q 013922 337 ----RGVQAQFTVECRELF 351 (434)
Q Consensus 337 ----aGk~v~f~V~Ik~Ik 351 (434)
.+.+++|.|++..|+
T Consensus 208 ~~IppnstL~fdVEL~~v~ 226 (226)
T KOG0552|consen 208 PEIPPNSTLVFDVELLSVK 226 (226)
T ss_pred CcCCCCCcEEEEEEEEecC
Confidence 568999999998873
No 16
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=98.02 E-value=3.4e-05 Score=73.29 Aligned_cols=84 Identities=13% Similarity=0.156 Sum_probs=67.6
Q ss_pred CCCcCcEEEEEEEEEeeccCCCCCcccCCCc--ccCEEEEecCCCCCCccHHHHhcCCCCCceEEEEEcCCCCCCCCC--
Q 013922 260 GLQVGDIAIVDISATTIDEDESNVQNIPDAE--TKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEH-- 335 (434)
Q Consensus 260 ~~q~GD~V~vd~~~~~~~~d~~~G~~i~~~~--~~~~~l~lg~~~~~~p~fe~~LiG~k~Ge~~~~~i~fPed~~~~~-- 335 (434)
.+..||.|+|+|.++. .+|..|+++- ..++.|.++ .++|||+++|.||++|++..|.++.-..|+...
T Consensus 116 ~p~~~d~V~v~Y~g~l-----~dG~vfdss~~~g~P~~f~l~---~vipG~~eaL~~M~~G~k~~~~IP~~lAYG~~g~~ 187 (206)
T PRK11570 116 IPARTDRVRVHYTGKL-----IDGTVFDSSVARGEPAEFPVN---GVIPGWIEALTLMPVGSKWELTIPHELAYGERGAG 187 (206)
T ss_pred CCCCCCEEEEEEEEEE-----CCCCEEEeccCCCCCeEEEee---chhhHHHHHHcCCCCCCEEEEEECHHHcCCCCCCC
Confidence 4678999999999984 4788887653 367888886 489999999999999999999998555665543
Q ss_pred ---CCCceeEEEEEEEEee
Q 013922 336 ---LRGVQAQFTVECRELF 351 (434)
Q Consensus 336 ---laGk~v~f~V~Ik~Ik 351 (434)
-.+.++.|+|++.+|.
T Consensus 188 ~~Ipp~s~Lif~veLl~i~ 206 (206)
T PRK11570 188 ASIPPFSTLVFEVELLEIL 206 (206)
T ss_pred CCcCCCCeEEEEEEEEEEC
Confidence 2467899999999883
No 17
>PRK04980 hypothetical protein; Provisional
Probab=91.67 E-value=0.82 Score=38.69 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=38.2
Q ss_pred CCceeEEEEEEEEeecCCCCCCCHHHHhhhCCCCCCHHHHHHHHHHH
Q 013922 337 RGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQK 383 (434)
Q Consensus 337 aGk~v~f~V~Ik~Ik~~~lPELdDefak~l~~~~~Tleelr~~Ike~ 383 (434)
.+-...+.++|.+|....+-+|||+.|++= |+ |+++||+.|++.
T Consensus 44 e~g~~~c~ieI~sV~~i~f~eLte~hA~qE--g~-sL~elk~~i~~i 87 (102)
T PRK04980 44 EDDRYFCTIEVLSVSPVTFDELNEKHAEQE--NM-TLPELKQVIAEI 87 (102)
T ss_pred CCCcEEEEEEEEEEEEEehhhCCHHHHHHh--CC-CHHHHHHHHHHH
Confidence 345667899999999999999999999885 66 899999999875
No 18
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.69 E-value=2.1 Score=44.40 Aligned_cols=86 Identities=13% Similarity=0.176 Sum_probs=61.9
Q ss_pred CCcCcEEEEEEEEEeeccCCCCCcccCCCcccCEEEEecCCCCCCccHHHHhcCCCCCceEEEEEcCCCCCCCC------
Q 013922 261 LQVGDIAIVDISATTIDEDESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQE------ 334 (434)
Q Consensus 261 ~q~GD~V~vd~~~~~~~~d~~~G~~i~~~~~~~~~l~lg~~~~~~p~fe~~LiG~k~Ge~~~~~i~fPed~~~~------ 334 (434)
.-.|-+|.++|.+.. .+| .|.. +.-+|.|.+|++..++.|++-+|-.|++||...|.+..-=.|+..
T Consensus 101 P~~g~~V~v~~~G~~-----~~~-~f~~-~~~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~p~ 173 (397)
T KOG0543|consen 101 PNKGAVVKVHLEGEL-----EDG-VFDQ-RELRFEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEPPL 173 (397)
T ss_pred CCCCcEEEEEEEEEE-----CCc-ceec-cccceEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCCCCC
Confidence 345788999999983 233 4443 345588888864568889999999999999999999742234311
Q ss_pred CCCCceeEEEEEEEEeecC
Q 013922 335 HLRGVQAQFTVECRELFYR 353 (434)
Q Consensus 335 ~laGk~v~f~V~Ik~Ik~~ 353 (434)
---+-++.|+|++++....
T Consensus 174 IPPnA~l~yEVeL~~f~~~ 192 (397)
T KOG0543|consen 174 IPPNATLLYEVELLDFELK 192 (397)
T ss_pred CCCCceEEEEEEEEeeecC
Confidence 1134689999999998733
No 19
>cd06552 ASCH_yqfb_like ASC-1 homology domain, subfamily similar to Escherichia coli Yqfb. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=89.24 E-value=1.6 Score=36.09 Aligned_cols=42 Identities=24% Similarity=0.225 Sum_probs=37.5
Q ss_pred eeEEEEEEEEeecCCCCCCCHHHHhhhCCCCCCHHHHHHHHHHH
Q 013922 340 QAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQK 383 (434)
Q Consensus 340 ~v~f~V~Ik~Ik~~~lPELdDefak~l~~~~~Tleelr~~Ike~ 383 (434)
+....++|.+|....+.+|++++|+.- |+.|+++|++.+++.
T Consensus 42 ~~~~~~~v~~V~~~~~~~l~~~~A~~e--G~~s~~~~~~~l~~~ 83 (100)
T cd06552 42 RIFGEAEITSVEEKTLGELTDEDARQE--GFPSLEELKEALKEI 83 (100)
T ss_pred EEEEEEEEEEEEEEEhhhCCHHHHHhc--CCccHHHHHHHHHHH
Confidence 678889999999999999999999876 788999999998853
No 20
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=77.34 E-value=5.5 Score=31.49 Aligned_cols=32 Identities=19% Similarity=0.220 Sum_probs=23.4
Q ss_pred cHHHHhcCCCCCceEEEEEcCCCCCCCCCCCCceeEEEEEEEEee
Q 013922 307 GFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELF 351 (434)
Q Consensus 307 ~fe~~LiG~k~Ge~~~~~i~fPed~~~~~laGk~v~f~V~Ik~Ik 351 (434)
.+-.+|+|+++||++++.+. . | ..+++|.+|.
T Consensus 45 PLG~ALlG~~~Gd~v~~~~~--~--------g---~~~~~I~~I~ 76 (77)
T PF01272_consen 45 PLGKALLGKKVGDEVEVELP--G--------G---ERKYEILEIE 76 (77)
T ss_dssp HHHHHHTT-BTT-EEEEEET--T--------B---EEEEEEEEEE
T ss_pred HHHHHhcCCCCCCEEEEEeC--C--------c---eEEEEEEEEE
Confidence 58899999999999999883 2 3 5667778775
No 21
>PRK12450 foldase protein PrsA; Reviewed
Probab=76.61 E-value=17 Score=36.60 Aligned_cols=98 Identities=10% Similarity=0.135 Sum_probs=63.8
Q ss_pred CCCCccHHHHhcCCCCCceEE-EEEcCCCCCCCCCCCCceeEEE-EEEEEeecCCCCCCCHHHHhhhCCCCCCHHHHHHH
Q 013922 302 DKVLPGFLDSISGIQRGETKS-FRLAFPESWRQEHLRGVQAQFT-VECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKET 379 (434)
Q Consensus 302 ~~~~p~fe~~LiG~k~Ge~~~-~~i~fPed~~~~~laGk~v~f~-V~Ik~Ik~~~lPELdDefak~l~~~~~Tleelr~~ 379 (434)
+.+.|+|.+++-++++|+.-. |+++=|- ... .-|+ |+|.+... ...+.+++|..
T Consensus 200 ~~l~~ef~~aa~~Lk~GevS~~i~~~~pv-------~t~-~GyhIikl~~~~~----------------~~~~~~~~k~~ 255 (309)
T PRK12450 200 TTLPAEVVRAASGLKEGNRSEIITALDPA-------TSK-RTYHIIKVTKKAT----------------KKADWKAYQKR 255 (309)
T ss_pred CCCCHHHHHHHHcCCCCCccccccCCCcc-------ccC-CceEEEEEecccc----------------cCCCHHHHHHH
Confidence 468999999999999999743 2211111 000 0122 23333211 01257899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 013922 380 LLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLY 425 (434)
Q Consensus 380 Ike~l~~~~~~~~~~~~~~~ll~~L~e~~~~dlPeslv~~e~~~~~ 425 (434)
|++.|..++.+ +..+.+.++.+|.+...+.+.+..+..-....+
T Consensus 256 i~~~l~~~k~~--~~~~~~~~~~~~~~~a~v~i~d~~l~~~~~~~~ 299 (309)
T PRK12450 256 LKDIIVTGKLK--DPDFQNKVIAKALDKANVKIKDKAFANILAQFA 299 (309)
T ss_pred HHHHHHHHHhc--cHHHHHHHHHHHHHhCCCeeehHHHHHHHHHHh
Confidence 99999877543 335677789999999999999888776655543
No 22
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=73.92 E-value=39 Score=30.68 Aligned_cols=32 Identities=13% Similarity=0.168 Sum_probs=24.5
Q ss_pred cHHHHhcCCCCCceEEEEEcCCCCCCCCCCCCceeEEEEEEEEee
Q 013922 307 GFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELF 351 (434)
Q Consensus 307 ~fe~~LiG~k~Ge~~~~~i~fPed~~~~~laGk~v~f~V~Ik~Ik 351 (434)
.+..+|+|+++||++++.+ |. | .++++|.+|.
T Consensus 124 PlG~ALlGk~vGd~v~v~~--p~--------g---~~~~eI~~I~ 155 (157)
T PRK01885 124 PMARALLKKEVGDEVTVNT--PA--------G---EAEWYVNEIE 155 (157)
T ss_pred HHHHHHhCCCCCCEEEEEc--CC--------C---cEEEEEEEEE
Confidence 5789999999999998876 43 3 2566777775
No 23
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=72.59 E-value=5.3 Score=41.56 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=44.4
Q ss_pred CCCcCcEEEEEEEEEeeccCCCCCcccCCCc-ccCEEEEecCCCCCCccHHHHhcCCCCCce
Q 013922 260 GLQVGDIAIVDISATTIDEDESNVQNIPDAE-TKGFHFDTEDGDKVLPGFLDSISGIQRGET 320 (434)
Q Consensus 260 ~~q~GD~V~vd~~~~~~~~d~~~G~~i~~~~-~~~~~l~lg~~~~~~p~fe~~LiG~k~Ge~ 320 (434)
....||.|.++|+++. .||..|+++. ..+|.+.+| .+.++.++...+.-|+.|+.
T Consensus 8 ~p~~g~~v~~hytg~l-----~dgt~fdss~d~~~~~~~lg-~g~vi~~~~~gv~tm~~g~~ 63 (397)
T KOG0543|consen 8 TPMTGDKVEVHYTGTL-----LDGTKFDSSRDGDPFKFDLG-KGSVIKGWDLGVATMKKGEA 63 (397)
T ss_pred CCCCCceeEEEEeEEe-----cCCeecccccCCCceeeecC-CCcccccccccccccccccc
Confidence 3567999999999985 5788888764 368999999 46799999888888886654
No 24
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=72.30 E-value=21 Score=32.45 Aligned_cols=32 Identities=9% Similarity=0.125 Sum_probs=24.9
Q ss_pred cHHHHhcCCCCCceEEEEEcCCCCCCCCCCCCceeEEEEEEEEee
Q 013922 307 GFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELF 351 (434)
Q Consensus 307 ~fe~~LiG~k~Ge~~~~~i~fPed~~~~~laGk~v~f~V~Ik~Ik 351 (434)
.+..+|+|+++||++++.+ |. | .++++|.+|.
T Consensus 122 PlG~ALlGk~~GD~v~v~~--p~--------g---~~~~eI~~I~ 153 (156)
T TIGR01461 122 PLARALLKKEVGDEVVVNT--PA--------G---EASWYVNAIE 153 (156)
T ss_pred HHHHHHcCCCCCCEEEEEc--CC--------C---cEEEEEEEEE
Confidence 5889999999999999876 43 3 3566677776
No 25
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=72.23 E-value=34 Score=31.13 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=25.0
Q ss_pred cHHHHhcCCCCCceEEEEEcCCCCCCCCCCCCceeEEEEEEEEeec
Q 013922 307 GFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFY 352 (434)
Q Consensus 307 ~fe~~LiG~k~Ge~~~~~i~fPed~~~~~laGk~v~f~V~Ik~Ik~ 352 (434)
.+-.+|+|+++||++++.+ |. |. .+++|.+|..
T Consensus 124 PlG~ALlGk~vGD~v~v~~--p~--------g~---~~~eI~~I~~ 156 (158)
T PRK05892 124 PLGQALAGHQAGDTVTYST--PQ--------GP---AQVELLAVKL 156 (158)
T ss_pred HHHHHHhCCCCCCEEEEEc--CC--------Cc---EEEEEEEEEc
Confidence 5789999999999999876 43 32 5566788753
No 26
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=70.06 E-value=29 Score=31.17 Aligned_cols=20 Identities=10% Similarity=0.187 Sum_probs=17.6
Q ss_pred ccHHHHhcCCCCCceEEEEE
Q 013922 306 PGFLDSISGIQRGETKSFRL 325 (434)
Q Consensus 306 p~fe~~LiG~k~Ge~~~~~i 325 (434)
-.+..+|+|+++||++++.+
T Consensus 119 SPlG~ALlG~~~Gd~v~v~~ 138 (151)
T TIGR01462 119 SPLGKALIGKKVGDVVEVQT 138 (151)
T ss_pred CHHHHHHcCCCCCCEEEEEe
Confidence 36889999999999999876
No 27
>PRK02998 prsA peptidylprolyl isomerase; Reviewed
Probab=69.74 E-value=43 Score=33.20 Aligned_cols=92 Identities=10% Similarity=0.243 Sum_probs=63.0
Q ss_pred CCCCccHHHHhcCCCCCceEEEEEcCCCCCCCCCCCCceeEEEEEEEEeecCCCCCCCHHHHhhhCCCCCCHHHHHHHHH
Q 013922 302 DKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLL 381 (434)
Q Consensus 302 ~~~~p~fe~~LiG~k~Ge~~~~~i~fPed~~~~~laGk~v~f~V~Ik~Ik~~~lPELdDefak~l~~~~~Tleelr~~Ik 381 (434)
+.+.|.|.+++-++++|+.-. .+.-+. | -.-|.|.+ +. ...+.++.|+.|+
T Consensus 187 ~~l~~~~~~a~~~Lk~GevS~-pi~t~~--------G---~hIikv~~---~~--------------~~~~~e~~k~~I~ 237 (283)
T PRK02998 187 GQTVKEFEEAAYKLDAGQVSE-PVKTTY--------G---YHIIKVTD---KK--------------ELKPFDEVKDSIR 237 (283)
T ss_pred CcchHHHHHHHHcCCCCCcCC-ceEECC--------E---EEEEEEec---cC--------------CCCCHHHHHHHHH
Confidence 357899999999999999642 121121 1 12233333 21 1135688999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 013922 382 QKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGR 422 (434)
Q Consensus 382 e~l~~~~~~~~~~~~~~~ll~~L~e~~~~dlPeslv~~e~~ 422 (434)
+.|..+.....-..+.++++.+|.+...+++=+.-++....
T Consensus 238 ~~L~~~k~~~~~~~~~~~~~~~l~~~a~I~i~d~~~~~~~~ 278 (283)
T PRK02998 238 KDLEQQRLQDTTGKWKQQVVNDLLKDADIKVNDKEFKDTFK 278 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeccHHHHHHHH
Confidence 99988877766667889999999999999987766554443
No 28
>cd06541 ASCH ASC-1 homology or ASCH domain, a small beta-barrel domain found in all three kingdoms of life. ASCH resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation. The domain has been named after the ASC-1 protein, the activating signal cointegrator 1 or thyroid hormone receptor interactor protein 4 (TRIP4). ASC-1 is conserved in many eukaryotes and has been suggested to participate in a protein complex that interacts with RNA. It has been shown that ASC-1 mediates the interaction between various transciption factors and the basal transcriptional machinery.
Probab=69.20 E-value=16 Score=30.69 Aligned_cols=49 Identities=12% Similarity=-0.055 Sum_probs=38.9
Q ss_pred ceeEEEEEEEEeecCCC-CCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHH
Q 013922 339 VQAQFTVECRELFYRDL-PKLDDSLAGKLLPGCTTIEQVKETLLQKCREV 387 (434)
Q Consensus 339 k~v~f~V~Ik~Ik~~~l-PELdDefak~l~~~~~Tleelr~~Ike~l~~~ 387 (434)
.+..+.+++.+|..... -++++++|...++|..|+++.++....-....
T Consensus 43 ~~~~~~i~v~~V~~~~~f~~~~~e~a~~eGegd~sl~~~~~~~~~~~~~~ 92 (105)
T cd06541 43 QQPLAIAEVVKVEIMPMVNELSEEQEQAEGEGDLTLLYELKEHAAFFKEE 92 (105)
T ss_pred CCcEEEEEEEEEEEEECHHHccHHHHHHcCCCchhHHHHHHHHHHHhhHH
Confidence 36678899999998888 79999999988766778888887776655443
No 29
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=68.24 E-value=40 Score=33.81 Aligned_cols=93 Identities=11% Similarity=0.148 Sum_probs=62.2
Q ss_pred CCCCccHHHHhcCCCCCceEEEEEcCCCCCCCCCCCCceeEEEEEEEEeecCCCCCCCHHHHhhhCCCCCCHHHHHHHHH
Q 013922 302 DKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLL 381 (434)
Q Consensus 302 ~~~~p~fe~~LiG~k~Ge~~~~~i~fPed~~~~~laGk~v~f~V~Ik~Ik~~~lPELdDefak~l~~~~~Tleelr~~Ik 381 (434)
+.+.|.|.+++-++++|+...-.+.-+..| .-+.|.+ + + +..+.++.|..|+
T Consensus 199 ~~l~~~f~~a~~~L~~Geiss~pv~t~~Gy-----------hIikv~~---~--~------------~~~~~e~~k~~i~ 250 (298)
T PRK04405 199 TTLDSTFKTAAFKLKNGEYTTTPVKTTYGY-----------EVIKMIK---H--P------------AKGTFSDHKKALT 250 (298)
T ss_pred CCCCHHHHHHHHcCCCCCccCCCEEeCCeE-----------EEEEEee---c--C------------CCCCHHHHHHHHH
Confidence 468899999999999999632222222222 1222222 1 1 1125789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 013922 382 QKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQL 424 (434)
Q Consensus 382 e~l~~~~~~~~~~~~~~~ll~~L~e~~~~dlPeslv~~e~~~~ 424 (434)
+.|.+++.. ++.+.++++.+|.+...+.+.+.-+..-..+.
T Consensus 251 ~~l~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 291 (298)
T PRK04405 251 KQIYAKWAS--DSSVMQRVISKVLKKANVSIKDKDLKDALSSY 291 (298)
T ss_pred HHHHHHHHh--hhHHHHHHHHHHHHHCCCeeecHHHHHHHHHH
Confidence 999876532 44568899999999999999888776655443
No 30
>PRK05753 nucleoside diphosphate kinase regulator; Provisional
Probab=67.54 E-value=30 Score=30.66 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=26.1
Q ss_pred ccHHHHhcCCCCCceEEEEEcCCCCCCCCCCCCceeEEEEEEEEee
Q 013922 306 PGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELF 351 (434)
Q Consensus 306 p~fe~~LiG~k~Ge~~~~~i~fPed~~~~~laGk~v~f~V~Ik~Ik 351 (434)
-.+..+|+|+++||++.+.. |. |. .++++|.+|.
T Consensus 93 SPlG~ALlG~~~Gd~v~v~~--p~--------G~--~~~~~I~~I~ 126 (137)
T PRK05753 93 APVGAALLGLSVGQSIDWPL--PG--------GK--ETHLEVLEVE 126 (137)
T ss_pred CHHHHHHcCCCCCCEEEEEC--CC--------CC--EEEEEEEEEE
Confidence 35789999999999998875 43 43 3567788887
No 31
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=67.54 E-value=28 Score=31.44 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=24.3
Q ss_pred cHHHHhcCCCCCceEEEEEcCCCCCCCCCCCCceeEEEEEEEEee
Q 013922 307 GFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELF 351 (434)
Q Consensus 307 ~fe~~LiG~k~Ge~~~~~i~fPed~~~~~laGk~v~f~V~Ik~Ik 351 (434)
.+..+|+|+++||++++.+ |. | ..+++|.+|.
T Consensus 125 PlG~aLlGk~~Gd~v~~~~--p~--------g---~~~~~I~~I~ 156 (157)
T PRK00226 125 PIARALIGKKVGDTVEVTT--PG--------G---EYEYEILSVE 156 (157)
T ss_pred hHHHHHhCCCCCCEEEEEc--CC--------C---cEEEEEEEEE
Confidence 5789999999999999877 33 3 3456667764
No 32
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=66.89 E-value=35 Score=39.54 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=28.1
Q ss_pred cHHHHhcCCCCCceEEEEEcCCCCCCCCCCCCceeEEEEEEEEeecCCC
Q 013922 307 GFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDL 355 (434)
Q Consensus 307 ~fe~~LiG~k~Ge~~~~~i~fPed~~~~~laGk~v~f~V~Ik~Ik~~~l 355 (434)
.+..+|+|+++||++++.+ |. | ..+++|.+|....+
T Consensus 870 PLGkALLGkkvGD~V~v~~--P~--------g---~~~yeIl~I~~~~~ 905 (906)
T PRK14720 870 PLGKSLLGKKEGDSLEFVI--ND--------T---ETRYTVLKIERASL 905 (906)
T ss_pred HHHHHHcCCCCCCEEEEEE--CC--------c---eEEEEEEEEEeecC
Confidence 6889999999999999987 43 2 35677888876554
No 33
>COG2411 Uncharacterized conserved protein [Function unknown]
Probab=62.69 E-value=27 Score=32.33 Aligned_cols=58 Identities=16% Similarity=0.091 Sum_probs=46.6
Q ss_pred cCCCCCceEEEEEcCCCCCCCCCCCCceeEEEEEEEEeecCCCCCCCHHHHhhhCCCCCCHHHHHHHHHHHH
Q 013922 313 SGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKC 384 (434)
Q Consensus 313 iG~k~Ge~~~~~i~fPed~~~~~laGk~v~f~V~Ik~Ik~~~lPELdDefak~l~~~~~Tleelr~~Ike~l 384 (434)
++.++|+.+-+-. |-.+.-+.+|+.|..+.+-||+||=|..= ||.|.+||-..++...
T Consensus 33 ~~~k~g~eVyIh~------------~g~i~gkAkIk~V~~KrV~ELTdEDAr~D--GF~sreELi~~LkriY 90 (188)
T COG2411 33 IVLKPGSEVYIHS------------GGYIIGKAKIKKVKTKRVSELTDEDARLD--GFRSREELIEELKRIY 90 (188)
T ss_pred ccCCCCCEEEEEE------------CCEEEEEEEEEEEEEeeHhhhhHHHHHhc--ccccHHHHHHHHHHHc
Confidence 4567777766654 23677889999999999999999999653 8999999988888765
No 34
>PRK03002 prsA peptidylprolyl isomerase; Reviewed
Probab=61.80 E-value=60 Score=32.23 Aligned_cols=91 Identities=15% Similarity=0.254 Sum_probs=61.8
Q ss_pred CCCCccHHHHhcCCCCCceEEEEEcCCCCCCCCCCCCceeEEEEEEEEeecCCCCCCCHHHHhhhCCCCCCHHHHHHHHH
Q 013922 302 DKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLL 381 (434)
Q Consensus 302 ~~~~p~fe~~LiG~k~Ge~~~~~i~fPed~~~~~laGk~v~f~V~Ik~Ik~~~lPELdDefak~l~~~~~Tleelr~~Ik 381 (434)
+.+.|.|.+++-++++|+.-. .+.-+..| +-|.|.+.. +..+.++.|+.|+
T Consensus 189 ~~l~p~~~~a~~~L~~GevS~-pI~t~~G~-----------hIikv~~~~-----------------~~~~~e~vk~~I~ 239 (285)
T PRK03002 189 GRMAPEFETAAYKLKVGQISN-PVKSPNGY-----------HIIKLTDKK-----------------DLKPYDEVKDSIR 239 (285)
T ss_pred ccCCHHHHHHHHcCCCCCcCC-cEEECCEE-----------EEEEEeecC-----------------CCCCHHHHHHHHH
Confidence 358899999999999999654 23323222 223333321 1135788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 013922 382 QKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQ 423 (434)
Q Consensus 382 e~l~~~~~~~~~~~~~~~ll~~L~e~~~~dlPeslv~~e~~~ 423 (434)
..|..+... +..+...++.+|++..++.+=+.-++.....
T Consensus 240 ~~L~~~~~~--~~~~~~~~~~~~~~~a~v~i~d~~~~~~~~~ 279 (285)
T PRK03002 240 KNLEEERTA--DPIFGKKLLQSELKKANIKINDSELEDTFTI 279 (285)
T ss_pred HHHHHHHHH--hHHHHHHHHHHHHHHCCceeccHHHHHHHHh
Confidence 998877532 3456788899999999999877766655544
No 35
>cd06553 ASCH_Ef3133_like ASC-1 homology domain, subfamily similar to Enterococcus faecalis Ef3133. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=59.11 E-value=47 Score=29.21 Aligned_cols=52 Identities=12% Similarity=-0.004 Sum_probs=42.0
Q ss_pred CCCceeEEEEEEEEeecCCCCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHH
Q 013922 336 LRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVE 388 (434)
Q Consensus 336 laGk~v~f~V~Ik~Ik~~~lPELdDefak~l~~~~~Tleelr~~Ike~l~~~~ 388 (434)
-.|+. .+.+++.+|.....-++|++||..=+.|..|++.+|+..+.-.....
T Consensus 54 ~~g~p-~cvi~~~~V~~~~f~~vt~~~A~~EGegd~sl~~Wr~~h~~ff~~~~ 105 (127)
T cd06553 54 GQGKP-VCIIETTEVEVVPFNDVTEEFAYAEGEGDRSLEYWRKAHEAFFTREL 105 (127)
T ss_pred CCCCE-EEEEEEEEEEEEEcccCCHHHHHHhCCCccCHHHHHHHHHHHHHHHH
Confidence 35554 57799999999999999999998876566789999998877765553
No 36
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=55.87 E-value=58 Score=29.74 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=15.4
Q ss_pred cHHHHhcCCCCCceEEE
Q 013922 307 GFLDSISGIQRGETKSF 323 (434)
Q Consensus 307 ~fe~~LiG~k~Ge~~~~ 323 (434)
.+..+|+|+++||++++
T Consensus 133 PlG~ALlGk~vGD~V~v 149 (160)
T PRK06342 133 PVARALMGKAVGDVVSV 149 (160)
T ss_pred HHHHHHcCCCCCCEEEE
Confidence 57899999999999976
No 37
>PRK01326 prsA foldase protein PrsA; Reviewed
Probab=54.05 E-value=1.3e+02 Score=30.24 Aligned_cols=99 Identities=11% Similarity=0.073 Sum_probs=62.2
Q ss_pred CCCccHHHHhcCCCCCceEEEEEcCCCCCCCCCCCCceeEEEEEEEEeecCCCCCCCHHHHhhhCCCCCCHHHHHHHHHH
Q 013922 303 KVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQ 382 (434)
Q Consensus 303 ~~~p~fe~~LiG~k~Ge~~~~~i~fPed~~~~~laGk~v~f~V~Ik~Ik~~~lPELdDefak~l~~~~~Tleelr~~Ike 382 (434)
.+.|+|.+++..+++|+.-.. +.-+. +.+..|-+-|..+..+. +. ..+.++.|..|+.
T Consensus 198 ~l~~~~~~a~~~Lk~GevS~p-v~t~~--------~~~~~~GyhIikv~~~~-~~------------~~~~~evk~~i~~ 255 (310)
T PRK01326 198 NVPEQVKKAAFALDEDGVSDV-ISVLD--------PTAYQSKYYIVKVTKKT-EK------------KSDWKDYKKRLKA 255 (310)
T ss_pred cccHHHHHHHHcCCCCCcCCc-eecCC--------CCcCCceEEEEEEeccC-CC------------CCCHHHHHHHHHH
Confidence 466689999999999997432 21111 00011222223332221 11 1357889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 013922 383 KCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLY 425 (434)
Q Consensus 383 ~l~~~~~~~~~~~~~~~ll~~L~e~~~~dlPeslv~~e~~~~~ 425 (434)
.|..+... +..+.++++.+|.+..++.+.+.-++.-....+
T Consensus 256 ~l~~~k~~--~~~~~~~~~~~l~~~a~i~i~d~~l~~~~~~~~ 296 (310)
T PRK01326 256 IILAQKQN--DSNFQNKVIAKALDKANVKIKDKAFANILAQYA 296 (310)
T ss_pred HHHHHHHh--hHHHHHHHHHHHHHhCCceeccHHHHHHHHHHh
Confidence 99877543 234678899999999999999887765554443
No 38
>PRK03095 prsA peptidylprolyl isomerase; Reviewed
Probab=51.07 E-value=1.3e+02 Score=29.91 Aligned_cols=92 Identities=12% Similarity=0.171 Sum_probs=62.1
Q ss_pred CCCCccHHHHhcCCCCCceEEEEEcCCCCCCCCCCCCceeEEEEEEEEeecCCCCCCCHHHHhhhCCCCCCHHHHHHHHH
Q 013922 302 DKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLL 381 (434)
Q Consensus 302 ~~~~p~fe~~LiG~k~Ge~~~~~i~fPed~~~~~laGk~v~f~V~Ik~Ik~~~lPELdDefak~l~~~~~Tleelr~~Ik 381 (434)
+.+.|.|.+++-++++|+.-. .+..+. | -.-|.|.+++ .+ ..+.++.|+.|+
T Consensus 185 ~~L~~~~~~al~~L~~GevS~-pi~t~~--------G---~hIikv~~~~---~~-------------~~~~e~vk~~I~ 236 (287)
T PRK03095 185 GKMVKEFEDAAYKLKKDEVSE-PVKSQF--------G---YHIIKVTDIK---EP-------------EKSFEQSKADIK 236 (287)
T ss_pred ccccHHHHHHHHhCCCCCcCC-ceEECC--------E---EEEEEEeeec---CC-------------CCCHHHHHHHHH
Confidence 458899999999999999643 222121 1 1223334432 11 125788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 013922 382 QKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQ 423 (434)
Q Consensus 382 e~l~~~~~~~~~~~~~~~ll~~L~e~~~~dlPeslv~~e~~~ 423 (434)
+.|.++..... .+.+.++.++.+...+.+-+..++.-.+.
T Consensus 237 ~~L~~~k~~~~--~~~~~~~~~~~~~~~v~i~d~~~~~~~~~ 276 (287)
T PRK03095 237 KELVQKKAQDG--EFMNDLMMKEIKKADVKVDDKDLKDLFEE 276 (287)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHhCCeeechHHHHHHHhh
Confidence 99888755432 57788899999999999988888766544
No 39
>PRK00059 prsA peptidylprolyl isomerase; Provisional
Probab=49.42 E-value=74 Score=32.01 Aligned_cols=81 Identities=11% Similarity=0.121 Sum_probs=53.4
Q ss_pred CCCCccHHHHhcCCCCCceEEEEEcCCCCCCCCCCCCceeEEEEEEEEeecCCCCCCCHHHHhhhCCCCCCHHHHHHHHH
Q 013922 302 DKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLL 381 (434)
Q Consensus 302 ~~~~p~fe~~LiG~k~Ge~~~~~i~fPed~~~~~laGk~v~f~V~Ik~Ik~~~lPELdDefak~l~~~~~Tleelr~~Ik 381 (434)
+.+.|.|.+++-++++|+.-. .+..+.. -+-+.|.++... ...++++.|+.|+
T Consensus 251 ~~l~~~~~~a~~~l~~Gevs~-pi~~~~G-----------~~i~~v~~~~~~---------------~~~~~~~vk~~i~ 303 (336)
T PRK00059 251 SGYDKEFMDGAKALKEGEISA-PVKTQFG-----------YHIIKAIKKKEY---------------PVKPFDSVKEDIK 303 (336)
T ss_pred CccCHHHHHHHHcCCCCCcCc-cEecCCe-----------EEEEEEEeeccC---------------CCCCHHHHHHHHH
Confidence 357889999999999999632 2222221 233455555321 2346788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 013922 382 QKCREVEQTAKDQATDNAILDQLYKMVEIDIP 413 (434)
Q Consensus 382 e~l~~~~~~~~~~~~~~~ll~~L~e~~~~dlP 413 (434)
..|..+...+ .....+++|.+..++.+=
T Consensus 304 ~~l~~~k~~~----~~~~~~~~l~~~~~i~i~ 331 (336)
T PRK00059 304 KQLLQEKQSE----VFKKKIEEWKKALKVKKY 331 (336)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHhcCcccc
Confidence 8887775554 456667888888877653
No 40
>PF06857 ACP: Malonate decarboxylase delta subunit (MdcD); InterPro: IPR023439 This family consists of the acyl carrier protein found in malonate decarboxylase and citrate lyase. This subunit has the same covalently bound prosthetic group, derived from and similar to coenzyme A, as does citrate lyase, although this protein and the acyl carrier protein of citrate lyase do not show significant sequence similarity. Both malonyl and acetyl groups are transferred to the prosthetic group for catalysis.
Probab=38.29 E-value=1.2e+02 Score=24.85 Aligned_cols=50 Identities=20% Similarity=0.336 Sum_probs=42.6
Q ss_pred CCCCccEEEEEeCCCceEEEEEEEc-hhhHHHHHHHHHHHHhhhCCCCCCC
Q 013922 85 RLPADIEVTESPEPNSTVRLSVEVP-EAVCKDSYKRVLNELMKQVKIPGFR 134 (434)
Q Consensus 85 ~~~~~m~V~~e~~~~~~~~l~V~v~-~~ev~~~~~kal~~~~k~akIPGFR 134 (434)
-...++.|+++..++..+.+.++-+ ...+-+.+++.+.+.-++.+|++-+
T Consensus 11 leSsD~~V~v~p~~~~gi~i~l~S~v~~~fg~~i~~vi~~~l~~~~i~~~~ 61 (87)
T PF06857_consen 11 LESSDLEVTVEPAESGGIEIELESSVVKQFGDQIRAVIRETLEELGIEDAK 61 (87)
T ss_pred cccCcEEEEEEeCCCCcEEEEEEchHHhhhHHHHHHHHHHHHHhcCCCceE
Confidence 3345689999999888888888888 8899999999999999999999843
No 41
>PRK12907 secY preprotein translocase subunit SecY; Reviewed
Probab=37.37 E-value=26 Score=37.23 Aligned_cols=37 Identities=24% Similarity=0.462 Sum_probs=25.1
Q ss_pred EEEchhhHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHhhC
Q 013922 106 VEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVG 148 (434)
Q Consensus 106 V~v~~~ev~~~~~kal~~~~k~akIPGFRkGKvP~~iI~~~yG 148 (434)
+.++++++.+.+.| .-.-|||+||||.=...+++..-
T Consensus 330 i~~nP~~iAenL~k------~G~~IPGiRPGk~T~~yL~~~i~ 366 (434)
T PRK12907 330 IQVNPEQMAENLKK------QNGYVPGIRPGKSTEQYVTKILY 366 (434)
T ss_pred HccCHHHHHHHHHH------CCCcCCCcCCChhHHHHHHHHHH
Confidence 34566666555443 34579999999988888776543
No 42
>PRK06330 transcript cleavage factor/unknown domain fusion protein; Validated
Probab=36.07 E-value=1.6e+02 Score=33.36 Aligned_cols=19 Identities=16% Similarity=0.412 Sum_probs=16.6
Q ss_pred ccHHHHhcCCCCCceEEEE
Q 013922 306 PGFLDSISGIQRGETKSFR 324 (434)
Q Consensus 306 p~fe~~LiG~k~Ge~~~~~ 324 (434)
-.+..+|+|+++||++++.
T Consensus 685 SPIGkALLGkkvGD~V~v~ 703 (718)
T PRK06330 685 SKLAQEMLGKKVGDSVQFQ 703 (718)
T ss_pred CHHHHHhcCCCCCCEEEEe
Confidence 3678999999999999884
No 43
>TIGR02933 nifM_nitrog nitrogen fixation protein NifM. Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase.
Probab=34.91 E-value=1.5e+02 Score=28.82 Aligned_cols=71 Identities=13% Similarity=0.081 Sum_probs=44.8
Q ss_pred CCCCccHHHHhcCCCCCceEEEEEcCCCCCCCCCCCCceeEEEEEEEEeecCCCCCCCHHHHhhhCCCCCCHHHHHHHHH
Q 013922 302 DKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLL 381 (434)
Q Consensus 302 ~~~~p~fe~~LiG~k~Ge~~~~~i~fPed~~~~~laGk~v~f~V~Ik~Ik~~~lPELdDefak~l~~~~~Tleelr~~Ik 381 (434)
+.+.|.|.+++-++++|+.-. .+.-|. | -.-|.|.++... ...+.++.|..|+
T Consensus 184 ~~l~~~~~~~l~~L~~G~vS~-Pi~s~~--------G---~hIlkl~~~~~~---------------~~~~~eevk~~I~ 236 (256)
T TIGR02933 184 GLLYPQLDAALFQLAEGELSP-PIESEI--------G---WHLLLCEAIRPA---------------RPLTLEEALPRAR 236 (256)
T ss_pred CccChHHHHHHHcCCCCCcCC-ceeeCC--------e---EEEEEEeeecCC---------------CCCCHHHHHHHHH
Confidence 357899999999999998643 222232 2 122344544321 2246889999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013922 382 QKCREVEQTAKDQATDNA 399 (434)
Q Consensus 382 e~l~~~~~~~~~~~~~~~ 399 (434)
..|..+.....-..+..+
T Consensus 237 ~~L~~~k~~~~~~~wl~~ 254 (256)
T TIGR02933 237 DRLQLRQQKAYQRQWLVQ 254 (256)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999888766655444433
No 44
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2. Members of this family are restricted to the Firmicutes lineage (low-GC Gram-positive bacteria) and appear to be paralogous to, and much more divergent than, the preprotein translocase SecY. Members include the SecY2 protein of the accessory Sec system in Streptococcus gordonii, involved in export of the highly glycosylated platelet-binding protein GspB.
Probab=30.32 E-value=84 Score=32.92 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=24.7
Q ss_pred EchhhHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHhhCh
Q 013922 108 VPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGE 149 (434)
Q Consensus 108 v~~~ev~~~~~kal~~~~k~akIPGFRkGKvP~~iI~~~yG~ 149 (434)
++++++.+.++| ...-|||+||||.=...+++...+
T Consensus 297 ~nP~diA~~Lkk------~g~~IpGiRpG~~T~~yL~~~i~~ 332 (395)
T TIGR02920 297 INPKEISKSFRK------SGNYIPGIAPGKDTQRYLNRLARR 332 (395)
T ss_pred ECHHHHHHHHHH------CCCCccCcCCCchHHHHHHHHHHH
Confidence 345555444432 456799999999888888766654
No 45
>COG0782 Uncharacterized conserved protein, YhbC family [Function unknown]
Probab=27.85 E-value=89 Score=28.21 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=24.3
Q ss_pred cHHHHhcCCCCCceEEEEEcCCCCCCCCCCCCceeEEEEEEEEee
Q 013922 307 GFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELF 351 (434)
Q Consensus 307 ~fe~~LiG~k~Ge~~~~~i~fPed~~~~~laGk~v~f~V~Ik~Ik 351 (434)
.+-.+|+|+++||+..+..+ . -..+++|.+|.
T Consensus 118 Pig~aLlGk~vGd~v~v~~p--~-----------g~~~~~I~~I~ 149 (151)
T COG0782 118 PLGRALLGKKVGDTVEVNTP--G-----------GEKEVEILSIE 149 (151)
T ss_pred HHHHHHhCCCCCCEEEEecC--C-----------ceEEEEEEEEe
Confidence 46789999999999988774 2 24566667775
No 46
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit.
Probab=25.70 E-value=56 Score=34.32 Aligned_cols=37 Identities=27% Similarity=0.485 Sum_probs=24.3
Q ss_pred EEchhhHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHhhCh
Q 013922 107 EVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGE 149 (434)
Q Consensus 107 ~v~~~ev~~~~~kal~~~~k~akIPGFRkGKvP~~iI~~~yG~ 149 (434)
.++++++.+.++| .-.-|||+||||.=...+++..-+
T Consensus 315 ~~~p~~iA~~lkk------~g~~IpGiRpG~~T~~yL~~~i~~ 351 (410)
T TIGR00967 315 QLNPEDMAKNLKK------QGMFIPGIRPGKMTEKYLKRVIPR 351 (410)
T ss_pred ccCHHHHHHHHHH------CCCcCCCcCCChhHHHHHHHHHHH
Confidence 3455555444432 446799999998778888776544
No 47
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The eubacterial secY protein [] interacts with the signal sequences of secretory proteins as well as with two other components of the protein translocation system: secA and secE. SecY is an integral plasma membrane protein of 419 to 492 amino acid residues that apparently contains 10 transmembrane (TM), 6 cytoplasmic and 5 periplasmic regions. Cytoplasmic regions 2 and 3, and TM domains 1, 2, 4, 5, 7 and 10 are well conserved: the conserved cytoplasmic regions are believed to interact with cytoplasmic secretion factors, while the TM domains may participate in protein export []. Homologs of secY are found in archaebacteria []. SecY is also encoded in the chloroplast genome of some algae [] where it could be involved in a prokaryotic-like protein export system across the two membranes of the chloroplast endoplasmic reticulum (CER) which is present in chromophyte and cryptophyte algae.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0015031 protein transport, 0016020 membrane; PDB: 3J01_A 2ZJS_Y 2ZQP_Y 2WWA_A 2WW9_A 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A ....
Probab=25.34 E-value=83 Score=32.13 Aligned_cols=42 Identities=29% Similarity=0.394 Sum_probs=27.4
Q ss_pred hCCCCCCCCCCCcHHHHHHhhChHHHHHHHHHHHHHhhHHHHH
Q 013922 127 QVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAM 169 (434)
Q Consensus 127 ~akIPGFRkGKvP~~iI~~~yG~~~i~~e~~~~li~~~~~~ai 169 (434)
..-|||+||||.-...++++.-+-.+.....--++- .++..+
T Consensus 278 g~~I~GirpG~~T~~yL~~~i~~~~~~G~~~l~~ia-~~p~~~ 319 (346)
T PF00344_consen 278 GDYIPGIRPGKPTEKYLNKVIPRLSFLGALFLALIA-VLPLIF 319 (346)
T ss_dssp TSSSSTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred CCEeCCCCCChhHHHHHHHHHHHHhhhhHHHHHHHH-HHHHHH
Confidence 457999999999999988776554444444333322 344444
No 48
>COG0199 RpsN Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]
Probab=24.55 E-value=45 Score=25.62 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=15.6
Q ss_pred HHHHHHhhhCCCCCCCCC
Q 013922 119 RVLNELMKQVKIPGFRPG 136 (434)
Q Consensus 119 kal~~~~k~akIPGFRkG 136 (434)
..++++|-+=+||||+|.
T Consensus 42 ~cfRE~A~~g~ipGv~K~ 59 (61)
T COG0199 42 ICFRELAHKGEIPGVKKA 59 (61)
T ss_pred HHHHHHhhccCCCCeEec
Confidence 578899999999999984
No 49
>CHL00161 secY preprotein translocase subunit SecY; Validated
Probab=24.42 E-value=94 Score=32.78 Aligned_cols=37 Identities=24% Similarity=0.407 Sum_probs=24.5
Q ss_pred EEchhhHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHhhCh
Q 013922 107 EVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGE 149 (434)
Q Consensus 107 ~v~~~ev~~~~~kal~~~~k~akIPGFRkGKvP~~iI~~~yG~ 149 (434)
.++++++.+.+.| ...-|||+||||--...+++..-+
T Consensus 317 ~~~p~~iA~~Lkk------~g~~IpGvRpG~~T~~yL~~~i~~ 353 (417)
T CHL00161 317 VLNPKDISENLQK------MAVSIPGIRPGKATTKYLKKTLNR 353 (417)
T ss_pred hcCHHHHHHHHHH------CCCcCCCcCCChhHHHHHHHHHHH
Confidence 3455555444442 456799999998668888766543
No 50
>COG3097 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.16 E-value=1.1e+02 Score=25.63 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=34.3
Q ss_pred eeEEEEEEEEeecCCCCCCCHHHHhhhCCCCCCHHHHHHHHHHH
Q 013922 340 QAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQK 383 (434)
Q Consensus 340 ~v~f~V~Ik~Ik~~~lPELdDefak~l~~~~~Tleelr~~Ike~ 383 (434)
..-++++|.+|.-..+-+|++--|++- .-++.+||+-|++-
T Consensus 48 ~~fc~I~vl~vspvtld~l~e~HAeQE---nm~L~eLk~vI~eI 88 (106)
T COG3097 48 RYFCTIEVLAVSPVTLDELTEKHAEQE---NMTLPELKKVIAEI 88 (106)
T ss_pred cEEEEEEEEEeccEehhhhhhhhhhhh---cCCcHHHHHHHHHH
Confidence 467889999999999999999888773 45799999988764
No 51
>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion]
Probab=22.16 E-value=1.5e+02 Score=31.67 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=17.8
Q ss_pred hCCCCCCCCCCCcHHHHHHhhCh
Q 013922 127 QVKIPGFRPGKIPESVLVGFVGE 149 (434)
Q Consensus 127 ~akIPGFRkGKvP~~iI~~~yG~ 149 (434)
-.-|||+||||.=...+++...+
T Consensus 348 G~~IPGiRpg~~te~yL~rvi~r 370 (436)
T COG0201 348 GGFIPGIRPGKDTEKYLNRVIPR 370 (436)
T ss_pred CCcCCCcCCChhHHHHHHHHHHH
Confidence 35699999999888887765543
No 52
>PRK09204 secY preprotein translocase subunit SecY; Reviewed
Probab=21.04 E-value=71 Score=33.78 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=22.6
Q ss_pred EchhhHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHhhC
Q 013922 108 VPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVG 148 (434)
Q Consensus 108 v~~~ev~~~~~kal~~~~k~akIPGFRkGKvP~~iI~~~yG 148 (434)
++++++.+.++| ...-|||+||||.=...+++..-
T Consensus 330 ~~p~~iAe~l~k------~g~~IpGiRpG~~T~~yL~~~i~ 364 (426)
T PRK09204 330 FNPEEIAENLKK------SGGFIPGIRPGEQTAEYLDKVLT 364 (426)
T ss_pred cCHHHHHHHHHH------CCCcccCCCCChhHHHHHHHHHH
Confidence 445555444432 44579999999987777765544
No 53
>PRK13253 citrate lyase subunit gamma; Provisional
Probab=20.78 E-value=3.9e+02 Score=22.16 Aligned_cols=48 Identities=13% Similarity=0.272 Sum_probs=39.4
Q ss_pred CCccEEEEEeCCCceEEEEEEEchh-hHHHHHHHHHHHHhhhCCCCCCC
Q 013922 87 PADIEVTESPEPNSTVRLSVEVPEA-VCKDSYKRVLNELMKQVKIPGFR 134 (434)
Q Consensus 87 ~~~m~V~~e~~~~~~~~l~V~v~~~-ev~~~~~kal~~~~k~akIPGFR 134 (434)
.-++.|.++..++..+.+.|+-+-. .+.+.+++++.+...+.++++-+
T Consensus 14 SsDl~V~veP~~~~~i~i~i~SsV~~~Fg~~i~~vv~~~l~~~~v~~~~ 62 (92)
T PRK13253 14 SSDVMIRIAPADTQGIDIQLESSVEKQFGDQIRAVILETLAKLGVENAQ 62 (92)
T ss_pred cCCEEEEEEeCCCCcEEEEEEeeHHhhhHHHHHHHHHHHHHhcCCCceE
Confidence 4468999999865678888888887 88899999999999999888843
No 54
>PF10884 DUF2683: Protein of unknown function (DUF2683); InterPro: IPR020271 This entry contains proteins with no known function.
Probab=20.68 E-value=1.1e+02 Score=24.70 Aligned_cols=25 Identities=12% Similarity=0.349 Sum_probs=20.3
Q ss_pred CCCCHHHHhhhC--------CCCCCHHHHHHHH
Q 013922 356 PKLDDSLAGKLL--------PGCTTIEQVKETL 380 (434)
Q Consensus 356 PELdDefak~l~--------~~~~Tleelr~~I 380 (434)
||++.||++++. +.++|+++||+.+
T Consensus 46 pElkPEfVeki~~i~k~~~~i~i~svd~LRk~~ 78 (80)
T PF10884_consen 46 PELKPEFVEKIKKIMKGKKFIPIGSVDELRKRY 78 (80)
T ss_pred cccCHHHHHHHHHHHhcccCcCcCcHHHHHHHh
Confidence 899999998762 2478999999876
No 55
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=20.64 E-value=99 Score=24.05 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=21.1
Q ss_pred HHHHHHhhcCccccccCCCCCcCcEEEEE
Q 013922 242 ELRRRHKSLGSLKIVTDRGLQVGDIAIVD 270 (434)
Q Consensus 242 ~L~~~~~~~a~~~~v~dr~~q~GD~V~vd 270 (434)
.+.+.++..+-.......++++||.|.|-
T Consensus 35 ~f~~~L~~~Gv~~~L~~~G~~~GD~V~Ig 63 (69)
T TIGR03595 35 RFARKLKKLGVEDALRKAGAKDGDTVRIG 63 (69)
T ss_pred HHHHHHHHCCHHHHHHHcCCCCCCEEEEc
Confidence 46677777775444457899999999764
No 56
>PRK08568 preprotein translocase subunit SecY; Reviewed
Probab=20.03 E-value=1.3e+02 Score=32.24 Aligned_cols=23 Identities=35% Similarity=0.587 Sum_probs=17.1
Q ss_pred hCCCCCCCCCCC-cHHHHHHhhCh
Q 013922 127 QVKIPGFRPGKI-PESVLVGFVGE 149 (434)
Q Consensus 127 ~akIPGFRkGKv-P~~iI~~~yG~ 149 (434)
..-|||+||||. =...+++...+
T Consensus 379 g~~IpGiRpG~~~t~~yL~~~i~r 402 (462)
T PRK08568 379 GMQIPGFRRNPKVIEKVLERYIPP 402 (462)
T ss_pred CCcccCcCCCchHHHHHHHHHHHH
Confidence 457999999996 47777766544
Done!