BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013923
(434 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 387 EPVCPICLTNPKDMAF-GCGHTTCKDCGTTISSCPMCREPITTRLRLY 433
E C +CL + F CGH C +C + CP+CR P+ +R+R +
Sbjct: 13 ERTCKVCLDRAVSIVFVPCGHLVCAECAPGLQLCPICRAPVRSRVRTF 60
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 42.4 bits (98), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 387 EPVCPICLTNPKDMAF-GCGH-TTCKDCGTTISSCPMCREPITTRLRLY 433
E C +C+ + F CGH CKDC ++ CP+CR I +R +
Sbjct: 24 ERTCKVCMDKEVSIVFIPCGHLVVCKDCAPSLRKCPICRSTIKGTVRTF 72
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 42.0 bits (97), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 387 EPVCPICLTNPKDMAF-GCGH-TTCKDCGTTISSCPMCREPITTRLRLY 433
E +C IC+ + F CGH TCK C + CPMC IT + +++
Sbjct: 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIF 72
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
Iap Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 42.0 bits (97), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 387 EPVCPICLTNPKDMAF-GCGH-TTCKDCGTTISSCPMCREPITTRLRLY 433
E +C IC+ + F CGH TCK C + CPMC IT + +++
Sbjct: 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIF 73
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 387 EPVCPICLTNPKDMAF-GCGH-TTCKDCGTTISSCPMCREPITTRLRL 432
E +C IC+ + F CGH TCK C + CPMC IT + ++
Sbjct: 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKI 71
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 387 EPVCPICLTNPKDMAF-GCGH-TTCKDCGTTISSCPMCREPITTRLRLY 433
E C +C+ + F CGH C++C ++ CP+CR I +R +
Sbjct: 295 ERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTF 343
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 35.4 bits (80), Expect = 0.062, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Query: 390 CPICLTNPKD-MAFGCGHTTCKDCGTTI-------SSCPMCREPITTR 429
CPICL K+ ++ C H CK C + S CP+C+ IT R
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 34.7 bits (78), Expect = 0.10, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 389 VCPICLTNPKDMAF-GCGHTTC-KDCGTTISSCPMCREPI 426
+C +C + F CGHT C + C + SCP+CR +
Sbjct: 20 LCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRV 59
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 33.1 bits (74), Expect = 0.27, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 387 EPVCPICLTNPKDMAFGCGHTTCKDCGTTIS----SCPMCREPIT 427
E C IC+ D+ C H+ C+ C S +CP+CR +T
Sbjct: 15 EEECCICMDGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 390 CPICLTNPKD--MAFGCGHTTCKDCGTTI----SSCPMCREPI 426
CPICL +P + MA C H C C T +CP+C+ P+
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 384 ALVEPVCPIC---LTNPKDMAFGCGHTTCKDC-GTTISS----CPMCREPITTRLRLYT 434
+L E C IC L P + C HT CK C +T+ CP CR +++ R +T
Sbjct: 12 SLSECQCGICMEILVEP--VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHT 68
>pdb|1G25|A Chain A, Solution Structure Of The N-Terminal Domain Of The Human
Tfiih Mat1 Subunit
Length = 65
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 11/48 (22%)
Query: 390 CPICLT----NP--KDMAFGCGHTTCKDCGTTI-----SSCPMCREPI 426
CP C T NP K M CGHT C+ C + +CP C P+
Sbjct: 6 CPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53
>pdb|2HDP|A Chain A, Solution Structure Of Hdm2 Ring Finger Domain
pdb|2HDP|B Chain B, Solution Structure Of Hdm2 Ring Finger Domain
Length = 63
Score = 29.6 bits (65), Expect = 3.1, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 15/52 (28%)
Query: 386 VEPVCPICLTNPKDMAFGC------GH-TTCKDCGTTISS----CPMCREPI 426
+EP C IC PK+ GC GH C C + CP+CR+PI
Sbjct: 7 IEP-CVICQGRPKN---GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPI 54
>pdb|2JFN|A Chain A, Crystal Structure Of Escherichia Coli Glutamate Racemase
In Complex With L-Glutamate And Activator Udp-Murnac-Ala
Length = 285
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 41/112 (36%), Gaps = 24/112 (21%)
Query: 164 GFGDASTHDQYVFSFYPDNHYCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEA 223
G G S +D+ + PD HY + F+ V Y G S A I++ + IV A
Sbjct: 30 GVGGLSVYDE-IRHLLPDLHYIYAFDNVAFPY----------GEKSEAFIVERVVAIVTA 78
Query: 224 SNRQYHVLVIIADGQVTRNPDTPAGR-------------LSPQEQATVNSIV 262
+Y + + + PA R + P + T N IV
Sbjct: 79 VQERYPLALAVVACNTASTVSLPALREKFDFPVVGVVPAIKPAARLTANGIV 130
>pdb|2VJE|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 64
Score = 29.6 bits (65), Expect = 3.6, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 15/52 (28%)
Query: 386 VEPVCPICLTNPKDMAFGC------GH-TTCKDCGTTISS----CPMCREPI 426
+EP C IC PK+ GC GH C C + CP+CR+PI
Sbjct: 8 IEP-CVICQGRPKN---GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPI 55
>pdb|1FDN|A Chain A, Refined Crystal Structure Of The 2[4fe-4s] Ferredoxin From
Clostridium Acidurici At 1.84 Angstroms Resolution
pdb|2FDN|A Chain A, 2[4fe-4s] Ferredoxin From Clostridium Acidi-Urici
Length = 55
Score = 29.3 bits (64), Expect = 4.6, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 387 EPVCPICLTNPKDMAFGCGHTTCKDCGTTISSCPM 421
EP CP+ + D + TC DCG CP+
Sbjct: 15 EPECPVNAISSGDDRYVIDADTCIDCGACAGVCPV 49
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 28.9 bits (63), Expect = 6.3, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 8/45 (17%)
Query: 386 VEPVCPICLTNPKD-MAFGCGHTTCKDCGTTISS-------CPMC 422
VE C +CL K+ + CGH CK C T CP+C
Sbjct: 14 VEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|3QR3|A Chain A, Crystal Structure Of Cel5a (Eg2) From Hypocrea Jecorina
(Trichoderma Reesei)
pdb|3QR3|B Chain B, Crystal Structure Of Cel5a (Eg2) From Hypocrea Jecorina
(Trichoderma Reesei)
Length = 340
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 89 TLDEVISALREAGLESSNLILGIDFTKSNEWTGKYSF-NRKSLHAISNIRNPYEQAISII 147
T+ EV++A+R AG S + L N+W +F + S A+S + NP ++I
Sbjct: 161 TVQEVVTAIRNAGATSQFISL-----PGNDWQSAGAFISDGSAAALSQVTNPDGSTTNLI 215
Query: 148 GRTLSPFDEDN 158
D DN
Sbjct: 216 FDVHKYLDSDN 226
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,897,201
Number of Sequences: 62578
Number of extensions: 587100
Number of successful extensions: 1800
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1747
Number of HSP's gapped (non-prelim): 59
length of query: 434
length of database: 14,973,337
effective HSP length: 102
effective length of query: 332
effective length of database: 8,590,381
effective search space: 2852006492
effective search space used: 2852006492
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)