Query 013923
Match_columns 434
No_of_seqs 324 out of 2102
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 08:44:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013923.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013923hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1327 Copine [Signal transdu 100.0 7.7E-80 1.7E-84 641.3 21.7 251 77-343 258-524 (529)
2 cd01459 vWA_copine_like VWA Co 100.0 9.4E-72 2E-76 543.6 18.3 218 96-333 24-254 (254)
3 PF07002 Copine: Copine; Inte 100.0 3.8E-49 8.3E-54 356.1 14.5 137 129-277 1-146 (146)
4 PF10138 vWA-TerF-like: vWA fo 100.0 3.1E-29 6.8E-34 236.1 16.4 179 137-342 20-200 (200)
5 cd01457 vWA_ORF176_type VWA OR 99.8 5.9E-19 1.3E-23 165.4 12.3 170 106-311 4-188 (199)
6 smart00327 VWA von Willebrand 98.7 1.6E-07 3.4E-12 83.6 10.8 149 105-292 2-159 (177)
7 KOG0320 Predicted E3 ubiquitin 98.7 9.5E-09 2.1E-13 95.2 2.7 50 384-433 128-186 (187)
8 PF13920 zf-C3HC4_3: Zinc fing 98.5 1.8E-08 3.9E-13 74.9 -0.1 43 386-428 1-49 (50)
9 PLN03208 E3 ubiquitin-protein 98.5 5.2E-08 1.1E-12 91.9 1.8 45 384-428 15-80 (193)
10 KOG0823 Predicted E3 ubiquitin 98.5 4.5E-08 9.7E-13 94.1 1.2 49 385-433 45-103 (230)
11 cd01461 vWA_interalpha_trypsin 98.5 2.7E-06 5.9E-11 76.2 12.7 147 105-289 3-150 (171)
12 PF15227 zf-C3HC4_4: zinc fing 98.3 9.4E-08 2E-12 69.1 0.2 33 390-422 1-42 (42)
13 KOG0317 Predicted E3 ubiquitin 98.3 1.3E-07 2.9E-12 93.4 1.3 46 384-429 236-286 (293)
14 cd00198 vWFA Von Willebrand fa 98.3 8.8E-06 1.9E-10 70.0 12.4 147 106-290 2-154 (161)
15 cd01463 vWA_VGCC_like VWA Volt 98.3 8E-06 1.7E-10 75.9 12.4 151 105-289 14-177 (190)
16 KOG4172 Predicted E3 ubiquitin 98.3 6E-08 1.3E-12 73.6 -2.4 47 388-434 8-61 (62)
17 cd01471 vWA_micronemal_protein 98.2 1.1E-05 2.3E-10 74.4 11.6 170 105-308 1-179 (186)
18 PHA02929 N1R/p28-like protein; 98.2 5.8E-07 1.2E-11 87.8 1.9 45 386-430 173-230 (238)
19 cd01450 vWFA_subfamily_ECM Von 98.2 2E-05 4.2E-10 69.3 10.9 145 106-289 2-153 (161)
20 cd01464 vWA_subfamily VWA subf 98.2 1.2E-05 2.6E-10 73.7 9.8 145 104-290 3-160 (176)
21 KOG4275 Predicted E3 ubiquitin 98.1 2.6E-07 5.7E-12 91.3 -1.4 48 387-434 300-349 (350)
22 PF13519 VWA_2: von Willebrand 98.0 4.6E-05 9.9E-10 67.4 10.9 139 106-281 1-139 (172)
23 cd01466 vWA_C3HC4_type VWA C3H 98.0 4E-05 8.6E-10 69.1 10.5 142 105-289 1-145 (155)
24 KOG2164 Predicted E3 ubiquitin 98.0 1.9E-06 4.2E-11 90.9 2.1 43 387-429 186-238 (513)
25 cd01465 vWA_subgroup VWA subgr 98.0 0.00011 2.3E-09 66.0 12.8 146 105-287 1-149 (170)
26 PF13639 zf-RING_2: Ring finge 98.0 6.9E-07 1.5E-11 64.6 -1.2 35 389-423 2-44 (44)
27 TIGR00599 rad18 DNA repair pro 98.0 2.1E-06 4.6E-11 89.3 1.8 45 384-428 23-72 (397)
28 smart00504 Ubox Modified RING 98.0 3E-06 6.4E-11 65.1 1.9 42 387-428 1-47 (63)
29 PHA02926 zinc finger-like prot 98.0 2E-06 4.4E-11 82.6 0.8 45 385-429 168-232 (242)
30 cd01454 vWA_norD_type norD typ 98.0 0.00021 4.6E-09 65.3 13.8 151 106-281 2-155 (174)
31 PF13923 zf-C3HC4_2: Zinc fing 97.9 1.6E-06 3.5E-11 61.3 -0.3 33 390-422 1-39 (39)
32 KOG4265 Predicted E3 ubiquitin 97.8 4.5E-06 9.8E-11 84.8 0.9 47 387-433 290-342 (349)
33 cd01482 vWA_collagen_alphaI-XI 97.8 0.0002 4.4E-09 64.8 11.3 142 106-289 2-151 (164)
34 PF14634 zf-RING_5: zinc-RING 97.8 7.9E-06 1.7E-10 59.3 1.6 36 389-424 1-44 (44)
35 cd01456 vWA_ywmD_type VWA ywmD 97.8 0.00013 2.9E-09 68.6 9.8 160 105-287 21-188 (206)
36 cd01476 VWA_integrin_invertebr 97.7 0.00063 1.4E-08 61.0 12.7 134 105-279 1-142 (163)
37 KOG2177 Predicted E3 ubiquitin 97.7 8.9E-06 1.9E-10 77.0 0.6 41 384-424 10-55 (386)
38 cd01473 vWA_CTRP CTRP for CS 97.7 0.00089 1.9E-08 63.0 14.0 151 143-308 22-180 (192)
39 cd01472 vWA_collagen von Wille 97.7 0.00054 1.2E-08 61.8 11.9 141 106-289 2-151 (164)
40 cd01467 vWA_BatA_type VWA BatA 97.7 0.00053 1.1E-08 62.4 12.0 140 105-278 3-142 (180)
41 COG5574 PEX10 RING-finger-cont 97.7 1.2E-05 2.6E-10 78.9 1.1 44 385-428 213-263 (271)
42 TIGR03788 marine_srt_targ mari 97.7 0.00037 8E-09 76.3 12.7 146 105-289 272-419 (596)
43 cd00162 RING RING-finger (Real 97.7 3E-05 6.5E-10 54.2 2.5 38 389-426 1-45 (45)
44 PF00097 zf-C3HC4: Zinc finger 97.7 9.6E-06 2.1E-10 57.4 -0.2 33 390-422 1-41 (41)
45 KOG0978 E3 ubiquitin ligase in 97.6 1.8E-05 3.9E-10 87.1 0.8 44 385-428 641-690 (698)
46 PF13768 VWA_3: von Willebrand 97.6 0.00051 1.1E-08 61.3 10.0 142 106-287 2-145 (155)
47 cd01470 vWA_complement_factors 97.5 0.00082 1.8E-08 62.8 11.2 153 105-289 1-176 (198)
48 KOG0287 Postreplication repair 97.5 1.7E-05 3.6E-10 80.2 -0.8 45 384-428 20-69 (442)
49 KOG1571 Predicted E3 ubiquitin 97.5 2.7E-05 5.9E-10 79.3 0.7 50 385-434 303-354 (355)
50 COG5432 RAD18 RING-finger-cont 97.5 2.7E-05 5.8E-10 77.4 0.3 44 385-428 23-71 (391)
51 smart00184 RING Ring finger. E 97.4 7.9E-05 1.7E-09 50.2 2.1 33 390-422 1-39 (39)
52 PF14835 zf-RING_6: zf-RING of 97.4 6E-05 1.3E-09 59.4 1.4 43 385-427 5-51 (65)
53 KOG0311 Predicted E3 ubiquitin 97.4 9E-06 1.9E-10 82.5 -4.1 48 383-430 39-93 (381)
54 cd01480 vWA_collagen_alpha_1-V 97.4 0.0023 4.9E-08 59.4 12.0 147 105-289 3-161 (186)
55 PTZ00441 sporozoite surface pr 97.4 0.0028 6.1E-08 69.0 13.9 142 104-279 42-189 (576)
56 PF00092 VWA: von Willebrand f 97.4 0.00064 1.4E-08 60.8 7.7 145 106-288 1-153 (178)
57 cd01475 vWA_Matrilin VWA_Matri 97.3 0.0023 5E-08 61.2 11.3 142 105-289 3-156 (224)
58 PF13445 zf-RING_UBOX: RING-ty 97.3 4.2E-05 9.2E-10 55.7 -0.6 26 390-416 1-31 (43)
59 cd01462 VWA_YIEM_type VWA YIEM 97.3 0.0075 1.6E-07 53.5 13.7 133 106-279 2-135 (152)
60 cd01474 vWA_ATR ATR (Anthrax T 97.3 0.002 4.4E-08 59.5 10.3 147 104-289 4-155 (185)
61 PF04564 U-box: U-box domain; 97.3 7.1E-05 1.5E-09 60.1 0.2 44 386-429 3-52 (73)
62 COG5540 RING-finger-containing 97.2 0.0001 2.2E-09 73.8 1.0 41 387-427 323-372 (374)
63 cd01453 vWA_transcription_fact 97.2 0.0024 5.3E-08 59.6 10.0 139 105-279 4-147 (183)
64 KOG4628 Predicted E3 ubiquitin 97.2 0.00013 2.8E-09 74.8 1.5 42 388-429 230-280 (348)
65 KOG1785 Tyrosine kinase negati 97.0 0.00018 3.9E-09 74.2 0.3 42 388-429 370-418 (563)
66 cd01469 vWA_integrins_alpha_su 97.0 0.0077 1.7E-07 55.5 11.0 134 106-279 2-143 (177)
67 KOG0804 Cytoplasmic Zn-finger 97.0 0.0004 8.6E-09 72.7 2.5 45 383-427 171-222 (493)
68 cd01460 vWA_midasin VWA_Midasi 97.0 0.012 2.7E-07 58.6 12.9 139 104-279 60-205 (266)
69 cd01477 vWA_F09G8-8_type VWA F 96.9 0.013 2.8E-07 55.4 12.2 139 105-279 20-172 (193)
70 cd01451 vWA_Magnesium_chelatas 96.9 0.023 4.9E-07 52.3 13.0 145 107-287 3-153 (178)
71 cd01481 vWA_collagen_alpha3-VI 96.9 0.017 3.6E-07 53.1 12.0 141 106-289 2-154 (165)
72 PF12678 zf-rbx1: RING-H2 zinc 96.7 0.00046 9.9E-09 55.6 0.5 36 388-423 20-73 (73)
73 PRK13685 hypothetical protein; 96.7 0.013 2.9E-07 59.5 11.0 142 105-279 89-239 (326)
74 PF09967 DUF2201: VWA-like dom 96.7 0.0082 1.8E-07 53.1 8.3 121 107-287 1-125 (126)
75 cd01455 vWA_F11C1-5a_type Von 96.6 0.031 6.6E-07 53.3 12.0 156 106-286 2-160 (191)
76 cd01452 VWA_26S_proteasome_sub 96.5 0.033 7.1E-07 52.8 11.7 162 106-306 5-174 (187)
77 cd01458 vWA_ku Ku70/Ku80 N-ter 96.5 0.096 2.1E-06 49.9 15.0 155 106-280 3-174 (218)
78 COG5243 HRD1 HRD ubiquitin lig 96.5 0.00092 2E-08 68.6 1.2 42 385-426 285-344 (491)
79 KOG2879 Predicted E3 ubiquitin 96.4 0.0018 3.9E-08 64.2 2.6 43 385-427 237-287 (298)
80 PRK13406 bchD magnesium chelat 96.4 0.052 1.1E-06 59.8 14.1 158 102-290 399-559 (584)
81 KOG1100 Predicted E3 ubiquitin 96.4 0.0014 3E-08 63.1 1.8 44 390-433 161-206 (207)
82 KOG0802 E3 ubiquitin ligase [P 96.1 0.0015 3.3E-08 71.0 0.3 42 385-426 289-340 (543)
83 KOG4159 Predicted E3 ubiquitin 96.1 0.0023 4.9E-08 67.1 1.1 45 384-428 81-130 (398)
84 TIGR03436 acidobact_VWFA VWFA- 96.0 0.087 1.9E-06 52.3 12.3 134 105-278 54-204 (296)
85 TIGR02031 BchD-ChlD magnesium 96.0 0.13 2.9E-06 56.7 14.4 155 105-289 408-571 (589)
86 PF14447 Prok-RING_4: Prokaryo 96.0 0.0039 8.5E-08 47.8 1.7 43 386-428 6-51 (55)
87 PF12861 zf-Apc11: Anaphase-pr 95.7 0.005 1.1E-07 51.3 1.4 25 403-427 51-82 (85)
88 KOG1039 Predicted E3 ubiquitin 95.5 0.0068 1.5E-07 62.5 1.8 46 385-430 159-224 (344)
89 TIGR02442 Cob-chelat-sub cobal 95.3 0.38 8.3E-06 53.5 14.8 141 105-279 466-611 (633)
90 KOG0826 Predicted E3 ubiquitin 95.3 0.011 2.5E-07 60.0 2.6 50 384-433 297-354 (357)
91 COG5152 Uncharacterized conser 95.2 0.0049 1.1E-07 58.7 -0.3 41 387-427 196-241 (259)
92 COG5236 Uncharacterized conser 94.9 0.014 3E-07 59.8 1.9 46 383-428 57-109 (493)
93 KOG0297 TNF receptor-associate 94.8 0.018 4E-07 60.3 2.6 46 384-429 18-69 (391)
94 KOG2660 Locus-specific chromos 94.8 0.0048 1E-07 62.6 -1.7 48 385-432 13-66 (331)
95 PRK10997 yieM hypothetical pro 94.7 0.58 1.3E-05 50.6 13.6 146 104-289 323-469 (487)
96 KOG1813 Predicted E3 ubiquitin 94.6 0.015 3.3E-07 58.3 1.4 41 388-428 242-287 (313)
97 KOG0825 PHD Zn-finger protein 94.3 0.0086 1.9E-07 66.5 -1.1 46 385-430 121-174 (1134)
98 KOG0828 Predicted E3 ubiquitin 94.3 0.011 2.5E-07 62.7 -0.3 43 385-427 569-634 (636)
99 COG5222 Uncharacterized conser 94.3 0.016 3.5E-07 58.2 0.8 37 388-424 275-318 (427)
100 KOG4692 Predicted E3 ubiquitin 94.2 0.022 4.8E-07 58.5 1.5 45 385-429 420-469 (489)
101 PF04641 Rtf2: Rtf2 RING-finge 94.1 0.03 6.5E-07 55.4 2.4 45 385-429 111-163 (260)
102 PF05762 VWA_CoxE: VWA domain 93.5 1 2.2E-05 43.3 11.6 102 105-238 58-160 (222)
103 KOG3002 Zn finger protein [Gen 93.5 0.038 8.2E-07 56.1 1.8 45 384-428 45-92 (299)
104 KOG1002 Nucleotide excision re 93.4 0.018 3.9E-07 61.7 -0.7 44 385-428 534-587 (791)
105 TIGR00868 hCaCC calcium-activa 92.8 0.89 1.9E-05 52.4 11.6 140 107-287 307-449 (863)
106 COG5175 MOT2 Transcriptional r 92.8 0.037 8E-07 56.6 0.5 43 386-428 13-65 (480)
107 KOG3039 Uncharacterized conser 92.7 0.056 1.2E-06 53.2 1.6 44 386-429 220-272 (303)
108 KOG1734 Predicted RING-contain 92.6 0.038 8.2E-07 55.0 0.4 43 386-428 223-282 (328)
109 PF14570 zf-RING_4: RING/Ubox 91.9 0.052 1.1E-06 40.6 0.3 37 390-426 1-47 (48)
110 PF11789 zf-Nse: Zinc-finger o 89.7 0.082 1.8E-06 40.8 -0.4 36 386-421 10-53 (57)
111 KOG1001 Helicase-like transcri 88.7 0.13 2.8E-06 57.6 -0.1 40 388-428 455-501 (674)
112 KOG2932 E3 ubiquitin ligase in 88.2 0.2 4.3E-06 50.9 0.9 41 388-428 91-135 (389)
113 PF10367 Vps39_2: Vacuolar sor 87.9 0.26 5.7E-06 41.2 1.4 31 385-415 76-109 (109)
114 KOG1493 Anaphase-promoting com 87.1 0.11 2.3E-06 42.7 -1.4 40 388-427 32-81 (84)
115 PF11793 FANCL_C: FANCL C-term 86.1 0.15 3.3E-06 40.7 -1.0 42 387-428 2-67 (70)
116 COG1240 ChlD Mg-chelatase subu 85.7 5.6 0.00012 39.8 9.4 154 91-280 66-224 (261)
117 COG2425 Uncharacterized protei 85.4 2.4 5.3E-05 45.3 7.2 79 182-275 326-405 (437)
118 COG5219 Uncharacterized conser 85.3 0.29 6.3E-06 56.0 0.3 44 385-428 1467-1524(1525)
119 COG4245 TerY Uncharacterized p 84.7 2.6 5.7E-05 40.4 6.3 81 200-289 71-160 (207)
120 KOG4445 Uncharacterized conser 82.0 0.19 4.2E-06 50.8 -2.4 40 388-427 116-186 (368)
121 KOG1814 Predicted E3 ubiquitin 81.6 0.46 1E-05 49.9 0.0 29 387-415 184-216 (445)
122 KOG2114 Vacuolar assembly/sort 81.0 0.73 1.6E-05 52.3 1.3 41 388-428 841-884 (933)
123 COG5194 APC11 Component of SCF 80.4 0.73 1.6E-05 38.1 0.8 40 388-427 32-81 (88)
124 smart00744 RINGv The RING-vari 79.5 0.78 1.7E-05 34.2 0.7 35 389-423 1-49 (49)
125 KOG2817 Predicted E3 ubiquitin 78.1 0.86 1.9E-05 47.7 0.7 41 386-426 333-384 (394)
126 PF03854 zf-P11: P-11 zinc fin 74.1 0.95 2.1E-05 33.9 -0.2 43 388-431 3-50 (50)
127 KOG4362 Transcriptional regula 73.5 0.89 1.9E-05 50.8 -0.6 45 385-429 19-71 (684)
128 PF11775 CobT_C: Cobalamin bio 70.2 13 0.00028 36.3 6.6 52 225-278 133-187 (219)
129 KOG1428 Inhibitor of type V ad 69.9 1.7 3.6E-05 52.2 0.4 44 385-428 3484-3545(3738)
130 PHA03096 p28-like protein; Pro 68.1 1.6 3.5E-05 44.1 -0.1 29 388-416 179-216 (284)
131 KOG3799 Rab3 effector RIM1 and 66.0 2.3 4.9E-05 38.6 0.4 39 385-425 63-116 (169)
132 KOG0298 DEAD box-containing he 62.9 1.3 2.9E-05 52.3 -2.0 39 386-424 1152-1196(1394)
133 PF10272 Tmpp129: Putative tra 61.7 6.1 0.00013 41.3 2.7 13 417-429 341-353 (358)
134 COG4548 NorD Nitric oxide redu 61.1 27 0.00058 38.5 7.3 93 202-303 527-619 (637)
135 KOG2113 Predicted RNA binding 60.9 6.1 0.00013 40.5 2.4 45 387-431 343-391 (394)
136 KOG3970 Predicted E3 ubiquitin 58.5 5.8 0.00013 39.0 1.7 45 386-430 49-108 (299)
137 PF05290 Baculo_IE-1: Baculovi 54.0 4.9 0.00011 36.4 0.4 41 388-428 81-133 (140)
138 KOG1812 Predicted E3 ubiquitin 52.9 6.5 0.00014 41.4 1.2 30 386-415 145-179 (384)
139 PF03731 Ku_N: Ku70/Ku80 N-ter 52.9 2E+02 0.0044 27.0 12.3 145 107-276 2-172 (224)
140 KOG1941 Acetylcholine receptor 52.9 2.6 5.7E-05 44.3 -1.7 41 386-426 364-415 (518)
141 KOG2068 MOT2 transcription fac 52.7 25 0.00054 36.3 5.2 43 387-429 249-300 (327)
142 PF02891 zf-MIZ: MIZ/SP-RING z 48.2 10 0.00022 28.3 1.3 38 388-425 3-50 (50)
143 PF05883 Baculo_RING: Baculovi 46.7 5.2 0.00011 36.2 -0.6 30 387-416 26-65 (134)
144 COG5109 Uncharacterized conser 45.9 7.4 0.00016 40.0 0.3 42 385-426 334-386 (396)
145 TIGR01651 CobT cobaltochelatas 44.5 41 0.00088 37.5 5.6 62 214-279 502-568 (600)
146 PHA02825 LAP/PHD finger-like p 43.6 13 0.00028 34.7 1.4 43 385-427 6-59 (162)
147 KOG0825 PHD Zn-finger protein 43.0 15 0.00032 42.1 2.0 42 388-429 100-156 (1134)
148 KOG3579 Predicted E3 ubiquitin 41.0 14 0.00031 37.4 1.4 30 385-414 266-300 (352)
149 COG3959 Transketolase, N-termi 39.5 34 0.00073 33.9 3.6 73 189-274 89-175 (243)
150 KOG2034 Vacuolar sorting prote 39.4 12 0.00025 43.2 0.6 30 385-414 815-847 (911)
151 TIGR02836 spore_IV_A stage IV 39.0 57 0.0012 35.4 5.5 41 229-273 146-187 (492)
152 PF04131 NanE: Putative N-acet 38.9 2.3E+02 0.0049 27.4 9.0 115 89-275 53-173 (192)
153 PF06415 iPGM_N: BPG-independe 38.4 63 0.0014 31.7 5.4 57 212-279 14-71 (223)
154 PF07191 zinc-ribbons_6: zinc- 38.3 5 0.00011 32.5 -1.8 36 388-426 2-40 (70)
155 PF02601 Exonuc_VII_L: Exonucl 38.0 1.1E+02 0.0024 30.8 7.3 83 184-279 24-117 (319)
156 KOG1940 Zn-finger protein [Gen 36.7 7.8 0.00017 39.1 -1.2 36 389-424 160-204 (276)
157 KOG3113 Uncharacterized conser 36.0 20 0.00044 35.9 1.5 43 386-428 110-159 (293)
158 PF00113 Enolase_C: Enolase, C 35.6 45 0.00098 34.0 4.0 152 85-273 78-233 (295)
159 KOG2930 SCF ubiquitin ligase, 35.3 12 0.00026 32.6 -0.1 23 403-425 80-106 (114)
160 COG1488 PncB Nicotinic acid ph 35.0 1.3E+02 0.0029 32.0 7.5 73 187-278 248-324 (405)
161 PF04710 Pellino: Pellino; In 34.3 13 0.00029 39.2 0.0 21 149-169 84-104 (416)
162 PF02601 Exonuc_VII_L: Exonucl 34.1 1.2E+02 0.0026 30.6 6.8 66 212-290 26-97 (319)
163 PLN00191 enolase 33.9 3.1E+02 0.0066 29.8 10.2 70 85-155 241-312 (457)
164 KOG3161 Predicted E3 ubiquitin 33.3 17 0.00037 40.7 0.6 24 400-424 29-54 (861)
165 COG2816 NPY1 NTP pyrophosphohy 31.9 21 0.00045 36.2 0.9 27 403-429 108-142 (279)
166 PF13240 zinc_ribbon_2: zinc-r 31.1 20 0.00044 22.6 0.5 9 417-425 14-22 (23)
167 PRK04023 DNA polymerase II lar 31.1 48 0.001 39.2 3.7 43 386-428 625-675 (1121)
168 PF04216 FdhE: Protein involve 30.9 15 0.00032 36.9 -0.3 47 385-431 170-226 (290)
169 cd03313 enolase Enolase: Enola 29.7 2.5E+02 0.0055 29.7 8.6 60 90-155 216-278 (408)
170 PRK03564 formate dehydrogenase 29.2 37 0.00081 34.9 2.2 39 386-424 186-234 (309)
171 KOG3899 Uncharacterized conser 28.9 15 0.00033 37.4 -0.6 13 417-429 355-367 (381)
172 PF06906 DUF1272: Protein of u 28.8 35 0.00075 26.6 1.5 24 407-430 30-55 (57)
173 KOG2353 L-type voltage-depende 28.6 3.2E+02 0.007 33.0 9.9 129 142-286 245-383 (1104)
174 PF14871 GHL6: Hypothetical gl 28.3 1.4E+02 0.003 26.7 5.5 68 88-160 44-129 (132)
175 KOG1952 Transcription factor N 28.2 24 0.00051 40.7 0.6 44 386-429 190-249 (950)
176 PF10235 Cript: Microtubule-as 28.0 32 0.00069 29.2 1.2 36 387-426 44-79 (90)
177 PF09297 zf-NADH-PPase: NADH p 27.8 14 0.0003 24.9 -0.8 20 405-424 2-29 (32)
178 COG4306 Uncharacterized protei 27.6 20 0.00044 32.3 -0.0 23 407-429 29-52 (160)
179 TIGR02810 agaZ_gatZ D-tagatose 26.3 2.1E+02 0.0045 30.8 7.1 70 211-283 23-95 (420)
180 PRK15458 tagatose 6-phosphate 26.3 2E+02 0.0043 31.0 7.0 70 211-283 27-99 (426)
181 KOG1815 Predicted E3 ubiquitin 25.8 32 0.0007 36.7 1.1 29 386-414 69-99 (444)
182 KOG3039 Uncharacterized conser 24.9 35 0.00075 34.2 1.0 30 385-414 41-71 (303)
183 cd08550 GlyDH-like Glycerol_de 24.7 1.2E+02 0.0026 31.0 5.0 14 204-217 28-41 (349)
184 PRK15052 D-tagatose-1,6-bispho 24.1 2.4E+02 0.0051 30.4 7.1 71 211-284 24-97 (421)
185 KOG1812 Predicted E3 ubiquitin 23.7 34 0.00074 36.0 0.8 30 387-416 306-341 (384)
186 PF00158 Sigma54_activat: Sigm 23.2 86 0.0019 28.9 3.3 25 251-275 5-29 (168)
187 TIGR01090 apt adenine phosphor 22.8 89 0.0019 28.6 3.3 34 85-118 120-153 (169)
188 PF10083 DUF2321: Uncharacteri 22.7 22 0.00048 33.0 -0.7 25 405-429 27-52 (158)
189 KOG4275 Predicted E3 ubiquitin 22.6 32 0.00069 35.2 0.3 40 386-425 43-90 (350)
190 KOG1202 Animal-type fatty acid 22.5 75 0.0016 38.7 3.2 69 159-241 2147-2221(2376)
191 PF10571 UPF0547: Uncharacteri 22.2 54 0.0012 21.4 1.2 10 389-398 2-11 (26)
192 KOG2169 Zn-finger transcriptio 22.2 46 0.001 37.4 1.5 40 384-426 303-355 (636)
193 TIGR02493 PFLA pyruvate format 22.1 3.6E+02 0.0079 25.4 7.5 38 200-240 67-106 (235)
194 PRK00286 xseA exodeoxyribonucl 22.0 2.2E+02 0.0048 30.1 6.5 36 254-289 178-213 (438)
195 TIGR01562 FdhE formate dehydro 22.0 53 0.0012 33.7 1.8 41 385-425 182-233 (305)
196 PRK00077 eno enolase; Provisio 21.5 6.8E+02 0.015 26.6 10.1 60 88-155 217-278 (425)
197 COG4822 CbiK Cobalamin biosynt 21.4 1E+02 0.0022 30.5 3.5 175 84-280 56-243 (265)
198 cd05560 Xcc1710_like Xcc1710_l 21.2 1.8E+02 0.0038 25.1 4.6 43 231-279 21-63 (109)
199 PF05502 Dynactin_p62: Dynacti 21.1 48 0.001 36.0 1.3 39 387-429 26-65 (483)
200 TIGR00696 wecB_tagA_cpsF bacte 20.9 6E+02 0.013 23.7 8.5 61 201-279 50-111 (177)
201 PRK14714 DNA polymerase II lar 20.5 66 0.0014 38.9 2.4 42 387-428 667-721 (1337)
No 1
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=100.00 E-value=7.7e-80 Score=641.34 Aligned_cols=251 Identities=44% Similarity=0.676 Sum_probs=235.0
Q ss_pred cccccccccccCCHHHHHHHHHHcCCceeceEEEEecCCCCCCCCCCCCCCCCccccC-CCCCHHHHHHHHHhhcccccC
Q 013923 77 PQQATRFADNYNTLDEVISALREAGLESSNLILGIDFTKSNEWTGKYSFNRKSLHAIS-NIRNPYEQAISIIGRTLSPFD 155 (434)
Q Consensus 77 ~~~~~~i~~~~~~~~~~~~~l~~~Gl~~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~-~~~N~Ye~AI~~Ig~vl~~yD 155 (434)
+.++..+.++|+++++++-++..+|++++||+||||||+||+|++.+ .|||||+ ..+|+||+||++||+||++||
T Consensus 258 k~~g~~~l~~~~~~~~~sfld~i~gg~~lnf~vgIDfTaSNg~p~~~----sSLHyi~p~~~N~Y~~Ai~~vG~~lq~yd 333 (529)
T KOG1327|consen 258 KNSGQLILDRFTSLDQYSFLDYIAGGEQLNFTVGIDFTASNGDPRNP----SSLHYIDPHQPNPYEQAIRSVGETLQDYD 333 (529)
T ss_pred cccceEEehheeehhhhhHHHHHccCceeeeEEEEEEeccCCCCCCC----CcceecCCCCCCHHHHHHHHHhhhhcccC
Confidence 33788899999999999999999999999999999999999999864 5999999 479999999999999999999
Q ss_pred CCCCcceEeeCCCCCC---CCc--ceecCCCCCCcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHcc---Cc
Q 013923 156 EDNLIPCFGFGDASTH---DQY--VFSFYPDNHYCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEASN---RQ 227 (434)
Q Consensus 156 ~d~~ip~~GFGa~~~~---~~~--vf~~~~~~~~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~~---~~ 227 (434)
+||+||||||||+.+. .++ +|+|++.|++|+||+|||+|||+++|+|+|+|||+|||||++|+++|+++. .+
T Consensus 334 sdk~fpa~GFGakip~~~~vs~~f~ln~~~~~~~c~Gi~gVl~aY~~~lp~v~l~GPTnFaPII~~va~~a~~~~~~~~q 413 (529)
T KOG1327|consen 334 SDKLFPAFGFGAKIPPDGQVSHEFVLNFNPEDPECRGIEGVLEAYRKALPNVQLYGPTNFSPIINHVARIAQQSGNTAGQ 413 (529)
T ss_pred CCCccccccccccCCCCcccccceeecCCCCCCccccHHHHHHHHHhhcccccccCCCccHHHHHHHHHHHHHhccCCcc
Confidence 9999999999999766 355 456678999999999999999999999999999999999999999999886 89
Q ss_pred cEEEEEEeCCcccCCCCCCCCCCChhHHHHHHHHHHhccCCcEEEEEecccCCcccccccCCCCCc-------cccccee
Q 013923 228 YHVLVIIADGQVTRNPDTPAGRLSPQEQATVNSIVAASHYPLSIILVGVGDGPWDSVQQFDDNIPQ-------RAFDNFQ 300 (434)
Q Consensus 228 Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~AS~~PLSIIiVGVGd~~f~~m~~lD~~~~~-------r~rDnvq 300 (434)
||||||||||+||| |++|++|||.||++|||||||||||+||++|++||++++. |.|||||
T Consensus 414 Y~VLlIitDG~vTd------------m~~T~~AIV~AS~lPlSIIiVGVGd~df~~M~~lD~d~~~l~~~gr~~~rD~vQ 481 (529)
T KOG1327|consen 414 YHVLLIITDGVVTD------------MKETRDAIVSASDLPLSIIIVGVGDADFDMMRELDGDDPKLRSPGRIAERDNVQ 481 (529)
T ss_pred eEEEEEEeCCcccc------------HHHHHHHHHhhccCCeEEEEEEeCCCCHHHHHHhhcCCcccccccccccccceE
Confidence 99999999999998 9999999999999999999999999999999999998766 8999999
Q ss_pred eeecccccccccccchHHHHHHHHHHhcCChHHHhhhcccccC
Q 013923 301 FVNFTKIMSENKETSKKEAAFALAALMEIPLQYKATLSLHSVN 343 (434)
Q Consensus 301 FV~f~~~~~~~~~~~~~~~~la~~~L~EiP~Q~~~~~~lg~l~ 343 (434)
||+|+||++++...+.++++||+.||||||+||++||+++-+.
T Consensus 482 FV~f~~~~~~~~~~~~~~~~lA~~vL~EIP~Q~~~y~~~~~~~ 524 (529)
T KOG1327|consen 482 FVPFRDIMNGAENPSDKEAALALAVLAEIPQQYVQYMRLRGIL 524 (529)
T ss_pred eecHHHHhhcCCcccchhHHHHHHHHHHhhHHHHHHHHhcCCC
Confidence 9999999998777778899999999999999999999995554
No 2
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=100.00 E-value=9.4e-72 Score=543.57 Aligned_cols=218 Identities=56% Similarity=0.930 Sum_probs=198.0
Q ss_pred HHHHcCCceeceEEEEecCCCCCCCCCCCCCCCCccccCC-CCCHHHHHHHHHhhcccccCCCCCcceEeeCCCCCCCCc
Q 013923 96 ALREAGLESSNLILGIDFTKSNEWTGKYSFNRKSLHAISN-IRNPYEQAISIIGRTLSPFDEDNLIPCFGFGDASTHDQY 174 (434)
Q Consensus 96 ~l~~~Gl~~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~-~~N~Ye~AI~~Ig~vl~~yD~d~~ip~~GFGa~~~~~~~ 174 (434)
+++++|+| +||+||||||+||||+++ ++||||+++ .+|+||+||++||+||+.||+|++|||||||++.+++..
T Consensus 24 dy~~~G~~-~nl~vaIDfT~SNg~p~~----~~SLHy~~~~~~N~Yq~aI~~vg~il~~yD~D~~ip~~GFGa~~~~~~~ 98 (254)
T cd01459 24 DYRSAGLE-SNLIVAIDFTKSNGWPGE----KRSLHYISPGRLNPYQKAIRIVGEVLQPYDSDKLIPAFGFGAIVTKDQS 98 (254)
T ss_pred HHHhCCCe-eeEEEEEEeCCCCCCCCC----CCCcccCCCCCccHHHHHHHHHHHHHHhcCCCCceeeEeecccCCCCCc
Confidence 45678888 699999999999999975 589999974 689999999999999999999999999999999877665
Q ss_pred ceec---CCCCCCcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHccC--ccEEEEEEeCCcccCCCCCCCCC
Q 013923 175 VFSF---YPDNHYCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEASNR--QYHVLVIIADGQVTRNPDTPAGR 249 (434)
Q Consensus 175 vf~~---~~~~~~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~~~--~Y~VLlIiTDG~i~d~~~~~~~~ 249 (434)
++++ ++++|+|.|++|||++|++++++|+|+|||+|+|||++|+++++++.. +|+||||||||+|+|
T Consensus 99 v~~~f~~~~~~p~~~Gi~gvl~aY~~~l~~v~lsGpT~fapvI~~a~~~a~~~~~~~~Y~VLLIiTDG~i~D-------- 170 (254)
T cd01459 99 VFSFFPGYSESPECQGFEGVLRAYREALPNVSLSGPTNFAPVIRAAANIAKASNSQSKYHILLIITDGEITD-------- 170 (254)
T ss_pred cccccCCCCCCCcccCHHHHHHHHHHHhceeeecCcchHHHHHHHHHHHHHHhcCCCceEEEEEECCCCccc--------
Confidence 6554 588999999999999999999999999999999999999999987643 499999999999998
Q ss_pred CChhHHHHHHHHHHhccCCcEEEEEecccCCcccccccCC-------CCCcccccceeeeecccccccccccchHHHHHH
Q 013923 250 LSPQEQATVNSIVAASHYPLSIILVGVGDGPWDSVQQFDD-------NIPQRAFDNFQFVNFTKIMSENKETSKKEAAFA 322 (434)
Q Consensus 250 ~~~~~~~T~~aIv~AS~~PLSIIiVGVGd~~f~~m~~lD~-------~~~~r~rDnvqFV~f~~~~~~~~~~~~~~~~la 322 (434)
+++|++||++||++||||||||||+++|+.|++||+ ..+.|.|||||||+|++++... ..++++||
T Consensus 171 ----~~~t~~aIv~AS~~PlSIiiVGVGd~~F~~M~~LD~d~~l~~~~~~~~~rDnvqFV~f~~~~~~~---~~~~~~La 243 (254)
T cd01459 171 ----MNETIKAIVEASKYPLSIVIVGVGDGPFDAMERLDDDDGLESSDGRIATRDIVQFVPFTEFMSNA---GNPEAALA 243 (254)
T ss_pred ----HHHHHHHHHHHhcCCeEEEEEEeCCCChHHHHHhcCccccccccCCcceecceeeecchhhcccc---cccHHHHH
Confidence 899999999999999999999999999999999998 4577899999999999997542 13478999
Q ss_pred HHHHhcCChHH
Q 013923 323 LAALMEIPLQY 333 (434)
Q Consensus 323 ~~~L~EiP~Q~ 333 (434)
+++|+|||+||
T Consensus 244 ~~~L~EiP~Q~ 254 (254)
T cd01459 244 TAALAEIPSQL 254 (254)
T ss_pred HHHHHhccccC
Confidence 99999999996
No 3
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=100.00 E-value=3.8e-49 Score=356.10 Aligned_cols=137 Identities=48% Similarity=0.864 Sum_probs=129.0
Q ss_pred CccccCC-CCCHHHHHHHHHhhcccccCCCCCcceEeeCCCCCCC---CcceecC--CCCCCcCCHHHHHHHHHHhcCCc
Q 013923 129 SLHAISN-IRNPYEQAISIIGRTLSPFDEDNLIPCFGFGDASTHD---QYVFSFY--PDNHYCHGFEEVLARYREILPHL 202 (434)
Q Consensus 129 SLH~i~~-~~N~Ye~AI~~Ig~vl~~yD~d~~ip~~GFGa~~~~~---~~vf~~~--~~~~~~~G~egvl~~Yr~~~~~v 202 (434)
||||+++ .+|+||+||++||+||++||+||+||+|||||+.+++ +++|+|+ +++++|.|++|||++||+++++|
T Consensus 1 SLH~~~~~~~N~Y~~ai~~vg~il~~Yd~dk~~p~~GFGa~~~~~~~vsh~F~ln~~~~~p~~~Gi~gvl~~Y~~~~~~v 80 (146)
T PF07002_consen 1 SLHYISPNQPNPYQQAIRAVGEILQDYDSDKMIPAYGFGAKIPPDYSVSHCFPLNGNPQNPECQGIDGVLEAYRKALPKV 80 (146)
T ss_pred CcccCCCCCCCHHHHHHHHHHHHHHhhccCCccceeccCCcCCCCcccccceeeecCCCCCcccCHHHHHHHHHHHhhhe
Confidence 8999997 4999999999999999999999999999999998766 4558775 67999999999999999999999
Q ss_pred cccCCCChHHHHHHHHHHHHH---ccCccEEEEEEeCCcccCCCCCCCCCCChhHHHHHHHHHHhccCCcEEEEEecc
Q 013923 203 KLSGPTSFAPIIDAAIDIVEA---SNRQYHVLVIIADGQVTRNPDTPAGRLSPQEQATVNSIVAASHYPLSIILVGVG 277 (434)
Q Consensus 203 ~l~GPT~fapiI~~a~~~~~~---~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~AS~~PLSIIiVGVG 277 (434)
+|+|||+|+|||++|++++++ .+++|+||||||||+|+| +++|++||++||++||||||||||
T Consensus 81 ~l~GPT~fapiI~~a~~~a~~~~~~~~~Y~iLlIlTDG~i~D------------~~~T~~aIv~AS~~PlSIIiVGVG 146 (146)
T PF07002_consen 81 QLSGPTNFAPIINHAAKIAKQSNQNGQQYFILLILTDGQITD------------MEETIDAIVEASKLPLSIIIVGVG 146 (146)
T ss_pred EECCCccHHHHHHHHHHHHhhhccCCceEEEEEEeccccccc------------HHHHHHHHHHHccCCeEEEEEEeC
Confidence 999999999999999999984 577899999999999998 899999999999999999999998
No 4
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=99.96 E-value=3.1e-29 Score=236.13 Aligned_cols=179 Identities=22% Similarity=0.286 Sum_probs=151.7
Q ss_pred CCHHHHHHHHHhhcccccCCCCCcceEeeCCCCCCCCcceecCCCCCCcCCHHHHHHHHHHhcCCccccCCCChHHHHHH
Q 013923 137 RNPYEQAISIIGRTLSPFDEDNLIPCFGFGDASTHDQYVFSFYPDNHYCHGFEEVLARYREILPHLKLSGPTSFAPIIDA 216 (434)
Q Consensus 137 ~N~Ye~AI~~Ig~vl~~yD~d~~ip~~GFGa~~~~~~~vf~~~~~~~~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~ 216 (434)
....|.+++++..+...||+|+.+++|.||.+..+...| ....+++.++.....++.+...|-|+++|||+.
T Consensus 20 ~G~vQ~~~Er~lalA~~~DdDG~i~v~~Fs~~~~~~~~v--------t~~~~~~~v~~~~~~~~~~~~~G~t~y~~vm~~ 91 (200)
T PF10138_consen 20 DGTVQRVVERILALAAQFDDDGEIDVWFFSTEFDRLPDV--------TLDNYEGYVDELHAGLPDWGRMGGTNYAPVMED 91 (200)
T ss_pred CccHHHHHHHHHHHHhhcCCCCceEEEEeCCCCCcCCCc--------CHHHHHHHHHHHhccccccCCCCCcchHHHHHH
Confidence 467999999999999999999999999999986655444 334566666544444444565677999999999
Q ss_pred HHHHHHHc-cC-ccEEEEEEeCCcccCCCCCCCCCCChhHHHHHHHHHHhccCCcEEEEEecccCCcccccccCCCCCcc
Q 013923 217 AIDIVEAS-NR-QYHVLVIIADGQVTRNPDTPAGRLSPQEQATVNSIVAASHYPLSIILVGVGDGPWDSVQQFDDNIPQR 294 (434)
Q Consensus 217 a~~~~~~~-~~-~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~AS~~PLSIIiVGVGd~~f~~m~~lD~~~~~r 294 (434)
|++.+.+. .. .....|+||||.+++ .+++.++|++||++||+|+|||||+.+|+.|++||+ +.+|
T Consensus 92 v~~~y~~~~~~~~P~~VlFiTDG~~~~------------~~~~~~~i~~as~~pifwqFVgiG~~~f~fL~kLD~-l~gR 158 (200)
T PF10138_consen 92 VLDHYFKREPSDAPALVLFITDGGPDD------------RRAIEKLIREASDEPIFWQFVGIGDSNFGFLEKLDD-LAGR 158 (200)
T ss_pred HHHHHhhcCCCCCCeEEEEEecCCccc------------hHHHHHHHHhccCCCeeEEEEEecCCcchHHHHhhc-cCCc
Confidence 99998743 22 255557789999997 899999999999999999999999999999999999 7999
Q ss_pred cccceeeeecccccccccccchHHHHHHHHHHhcCChHHHhhhccccc
Q 013923 295 AFDNFQFVNFTKIMSENKETSKKEAAFALAALMEIPLQYKATLSLHSV 342 (434)
Q Consensus 295 ~rDnvqFV~f~~~~~~~~~~~~~~~~la~~~L~EiP~Q~~~~~~lg~l 342 (434)
.+||+.||.+.++... ++++|++.+|.|+|.|+++++.+|+|
T Consensus 159 ~vDNa~Ff~~~d~~~l------sD~eLy~~LL~Efp~Wl~~ar~~gi~ 200 (200)
T PF10138_consen 159 VVDNAGFFAIDDIDEL------SDEELYDRLLAEFPDWLKAARAKGIL 200 (200)
T ss_pred ccCCcCeEecCCcccC------CHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999998643 47999999999999999999999986
No 5
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=99.79 E-value=5.9e-19 Score=165.38 Aligned_cols=170 Identities=19% Similarity=0.232 Sum_probs=128.9
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCCcceEeeCCCCCCCCcceecCCCCCCc
Q 013923 106 NLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDEDNLIPCFGFGDASTHDQYVFSFYPDNHYC 185 (434)
Q Consensus 106 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~d~~ip~~GFGa~~~~~~~vf~~~~~~~~~ 185 (434)
++++.||.|.|+++..+ +.++| ..+.+++++..|+.++..||.|+...+++||.... .+. +
T Consensus 4 dvv~~ID~SgSM~~~~~----~~~~~----k~~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~~~~----~~~-------~ 64 (199)
T cd01457 4 DYTLLIDKSGSMAEADE----AKERS----RWEEAQESTRALARKCEEYDSDGITVYLFSGDFRR----YDN-------V 64 (199)
T ss_pred CEEEEEECCCcCCCCCC----CCCch----HHHHHHHHHHHHHHHHHhcCCCCeEEEEecCCccc----cCC-------c
Confidence 68899999999986421 22333 46899999999999999999999777777766411 111 1
Q ss_pred CCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHH-HHc-c---C-ccEEEEEEeCCcccCCCCCCCCCCChhHHHHHH
Q 013923 186 HGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIV-EAS-N---R-QYHVLVIIADGQVTRNPDTPAGRLSPQEQATVN 259 (434)
Q Consensus 186 ~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~-~~~-~---~-~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~ 259 (434)
. .+++.+++.+ +...|+|++.+.|+.+++.. +.. . . .+.+++|||||..++ .+++.+
T Consensus 65 ~-~~~v~~~~~~----~~p~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d------------~~~~~~ 127 (199)
T cd01457 65 N-SSKVDQLFAE----NSPDGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDD------------KDAVER 127 (199)
T ss_pred C-HHHHHHHHhc----CCCCCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCc------------HHHHHH
Confidence 1 5566666644 44569999999999998543 221 1 1 278889999999986 778999
Q ss_pred HHHHhccC-----CcEEEEEecccC--CcccccccCCCC--Ccccccceeeeecccccccc
Q 013923 260 SIVAASHY-----PLSIILVGVGDG--PWDSVQQFDDNI--PQRAFDNFQFVNFTKIMSEN 311 (434)
Q Consensus 260 aIv~AS~~-----PLSIIiVGVGd~--~f~~m~~lD~~~--~~r~rDnvqFV~f~~~~~~~ 311 (434)
+|++|++. +|.|.|||||++ .+..|++||+.+ .++.||||+||+|.++....
T Consensus 128 ~i~~a~~~l~~~~~i~i~~v~vG~~~~~~~~L~~ld~~~~~~~~~~d~vd~~~~~~~~~~~ 188 (199)
T cd01457 128 VIIKASDELDADNELAISFLQIGRDPAATAFLKALDDQLQEVGAKFDIVDTVTWDDMERLT 188 (199)
T ss_pred HHHHHHHhhccccCceEEEEEeCCcHHHHHHHHHHhHHHHhcCCcccceeeeeHHhhhcCC
Confidence 99999873 899999999985 799999999853 45789999999999986543
No 6
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=98.68 E-value=1.6e-07 Score=83.61 Aligned_cols=149 Identities=16% Similarity=0.272 Sum_probs=108.0
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---CCCcceEeeCCCCCCCCcceecCCC
Q 013923 105 SNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDE---DNLIPCFGFGDASTHDQYVFSFYPD 181 (434)
Q Consensus 105 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~---d~~ip~~GFGa~~~~~~~vf~~~~~ 181 (434)
.++++.||-|.|.. ......+...+..++..+.. +..|-+++|++... ..+++.
T Consensus 2 ~~v~l~vD~S~SM~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~~~---~~~~~~-- 58 (177)
T smart00327 2 LDVVFLLDGSGSMG------------------PNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDDAT---VLFPLN-- 58 (177)
T ss_pred ccEEEEEeCCCccc------------------hHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCce---EEEccc--
Confidence 47899999998873 13445555555555555554 88999999998422 222221
Q ss_pred CCCcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHc--c---CccEEEEEEeCCcccCCCCCCCCCCChhHHH
Q 013923 182 NHYCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEAS--N---RQYHVLVIIADGQVTRNPDTPAGRLSPQEQA 256 (434)
Q Consensus 182 ~~~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~--~---~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~ 256 (434)
...+.+.+++......+. ..|.|++...|+++++.+++. . +...+++|||||...+. +.
T Consensus 59 --~~~~~~~~~~~i~~~~~~--~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~iviitDg~~~~~------------~~ 122 (177)
T smart00327 59 --DSRSKDALLEALASLSYK--LGGGTNLGAALQYALENLFSKSAGSRRGAPKVLILITDGESNDG------------GD 122 (177)
T ss_pred --ccCCHHHHHHHHHhcCCC--CCCCchHHHHHHHHHHHhcCcCCCCCCCCCeEEEEEcCCCCCCC------------cc
Confidence 356788887777765543 578899999999999987521 1 12578999999998861 46
Q ss_pred HHHHHHHhccCCcEEEEEecccC-CcccccccCCCCC
Q 013923 257 TVNSIVAASHYPLSIILVGVGDG-PWDSVQQFDDNIP 292 (434)
Q Consensus 257 T~~aIv~AS~~PLSIIiVGVGd~-~f~~m~~lD~~~~ 292 (434)
+.+++..+.+..+.|++||+|+. +.+.|+.|.....
T Consensus 123 ~~~~~~~~~~~~i~i~~i~~~~~~~~~~l~~~~~~~~ 159 (177)
T smart00327 123 LLKAAKELKRSGVKVFVVGVGNDVDEEELKKLASAPG 159 (177)
T ss_pred HHHHHHHHHHCCCEEEEEEccCccCHHHHHHHhCCCc
Confidence 77777788888899999999998 8999999987543
No 7
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=9.5e-09 Score=95.19 Aligned_cols=50 Identities=36% Similarity=0.852 Sum_probs=40.2
Q ss_pred cCCCCccCccccCCcc---ceecCCCCCchhhhcCC----CCCCCcCcccccc--cccC
Q 013923 384 ALVEPVCPICLTNPKD---MAFGCGHTTCKDCGTTI----SSCPMCREPITTR--LRLY 433 (434)
Q Consensus 384 ~~e~~~CpICl~~~kd---v~l~CGH~fC~~Ci~~l----~~CPlCR~~i~~~--i~ly 433 (434)
.+....|||||+-+.. +.+.|||.||..|+++. ..||+||+.|+.+ .++|
T Consensus 128 ~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred cccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence 3455899999998776 55799999999999853 6899999988765 3444
No 8
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.51 E-value=1.8e-08 Score=74.95 Aligned_cols=43 Identities=42% Similarity=1.221 Sum_probs=35.6
Q ss_pred CCCccCccccCCcc-ceecCCCC-CchhhhcCC----CCCCCcCccccc
Q 013923 386 VEPVCPICLTNPKD-MAFGCGHT-TCKDCGTTI----SSCPMCREPITT 428 (434)
Q Consensus 386 e~~~CpICl~~~kd-v~l~CGH~-fC~~Ci~~l----~~CPlCR~~i~~ 428 (434)
++..|.||++...+ +.++|||. ||..|+.++ ..||+||++|..
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 35689999999999 66799999 999998866 899999999865
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.47 E-value=5.2e-08 Score=91.94 Aligned_cols=45 Identities=29% Similarity=0.691 Sum_probs=38.8
Q ss_pred cCCCCccCccccCCcc-ceecCCCCCchhhhcCC--------------------CCCCCcCccccc
Q 013923 384 ALVEPVCPICLTNPKD-MAFGCGHTTCKDCGTTI--------------------SSCPMCREPITT 428 (434)
Q Consensus 384 ~~e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~l--------------------~~CPlCR~~i~~ 428 (434)
..++..|+||++.+++ +.++|||.||..|+..| ..||+||.++..
T Consensus 15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 4567899999999999 88899999999998643 379999999965
No 10
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=4.5e-08 Score=94.13 Aligned_cols=49 Identities=33% Similarity=0.632 Sum_probs=42.5
Q ss_pred CCCCccCccccCCcc-ceecCCCCCchhhhcCC-------CCCCCcCccccc--ccccC
Q 013923 385 LVEPVCPICLTNPKD-MAFGCGHTTCKDCGTTI-------SSCPMCREPITT--RLRLY 433 (434)
Q Consensus 385 ~e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~l-------~~CPlCR~~i~~--~i~ly 433 (434)
...+.|.|||+..+| +++.|||.||+.|+..| +.||+|+..++. .++||
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 456899999999999 99999999999999876 579999998854 57776
No 11
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=98.46 E-value=2.7e-06 Score=76.25 Aligned_cols=147 Identities=18% Similarity=0.280 Sum_probs=102.1
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCCcceEeeCCCCCCCCcceecCCCCCC
Q 013923 105 SNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDEDNLIPCFGFGDASTHDQYVFSFYPDNHY 184 (434)
Q Consensus 105 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~d~~ip~~GFGa~~~~~~~vf~~~~~~~~ 184 (434)
.++++.+|-|.|=. | ...+.|..++..++..+..+..|-+++|+......... ..
T Consensus 3 ~~v~~vlD~S~SM~--~----------------~~~~~~~~al~~~l~~l~~~~~~~l~~Fs~~~~~~~~~-------~~ 57 (171)
T cd01461 3 KEVVFVIDTSGSMS--G----------------TKIEQTKEALLTALKDLPPGDYFNIIGFSDTVEEFSPS-------SV 57 (171)
T ss_pred ceEEEEEECCCCCC--C----------------hhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCceeecCc-------ce
Confidence 47899999998853 1 23667777788888888877789999998864321110 01
Q ss_pred cCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHccCccEEEEEEeCCcccCCCCCCCCCCChhHHHHHHHHHHh
Q 013923 185 CHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEASNRQYHVLVIIADGQVTRNPDTPAGRLSPQEQATVNSIVAA 264 (434)
Q Consensus 185 ~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~A 264 (434)
..+-+. ++...+.+..+...|-|++...|+.+.+..++....--++|+||||...+ .+++.+++.++
T Consensus 58 ~~~~~~-~~~~~~~l~~~~~~g~T~l~~al~~a~~~l~~~~~~~~~iillTDG~~~~------------~~~~~~~~~~~ 124 (171)
T cd01461 58 SATAEN-VAAAIEYVNRLQALGGTNMNDALEAALELLNSSPGSVPQIILLTDGEVTN------------ESQILKNVREA 124 (171)
T ss_pred eCCHHH-HHHHHHHHHhcCCCCCcCHHHHHHHHHHhhccCCCCccEEEEEeCCCCCC------------HHHHHHHHHHh
Confidence 122222 22334455556678999999999999988765333446788999999765 56778888888
Q ss_pred ccCCcEEEEEecccC-CcccccccCC
Q 013923 265 SHYPLSIILVGVGDG-PWDSVQQFDD 289 (434)
Q Consensus 265 S~~PLSIIiVGVGd~-~f~~m~~lD~ 289 (434)
.+.++.|..||+|.+ +...|+.+-+
T Consensus 125 ~~~~i~i~~i~~g~~~~~~~l~~ia~ 150 (171)
T cd01461 125 LSGRIRLFTFGIGSDVNTYLLERLAR 150 (171)
T ss_pred cCCCceEEEEEeCCccCHHHHHHHHH
Confidence 777899999999963 5566666654
No 12
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.35 E-value=9.4e-08 Score=69.14 Aligned_cols=33 Identities=48% Similarity=1.195 Sum_probs=25.3
Q ss_pred cCccccCCcc-ceecCCCCCchhhhcCC--------CCCCCc
Q 013923 390 CPICLTNPKD-MAFGCGHTTCKDCGTTI--------SSCPMC 422 (434)
Q Consensus 390 CpICl~~~kd-v~l~CGH~fC~~Ci~~l--------~~CPlC 422 (434)
||||++.+++ ++++|||+||..|+.++ ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999 99999999999998732 468887
No 13
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.3e-07 Score=93.38 Aligned_cols=46 Identities=33% Similarity=0.756 Sum_probs=40.0
Q ss_pred cCCCCccCccccCCcc-ceecCCCCCchhhhcCC----CCCCCcCcccccc
Q 013923 384 ALVEPVCPICLTNPKD-MAFGCGHTTCKDCGTTI----SSCPMCREPITTR 429 (434)
Q Consensus 384 ~~e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~l----~~CPlCR~~i~~~ 429 (434)
.+....|.+|++...+ .+++|||.||..|+..| ..||+||..+...
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCc
Confidence 3556899999999999 88999999999999866 4799999998754
No 14
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=98.34 E-value=8.8e-06 Score=69.98 Aligned_cols=147 Identities=14% Similarity=0.302 Sum_probs=98.0
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---CCCcceEeeCCCCCCCCcceecCCCC
Q 013923 106 NLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDE---DNLIPCFGFGDASTHDQYVFSFYPDN 182 (434)
Q Consensus 106 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~---d~~ip~~GFGa~~~~~~~vf~~~~~~ 182 (434)
++++.||.|.|- .....+++...+..++..+.. ...+-+++|+.... .++.+..
T Consensus 2 ~v~~viD~S~Sm------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~~~---~~~~~~~-- 58 (161)
T cd00198 2 DIVFLLDVSGSM------------------GGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNAR---VVLPLTT-- 58 (161)
T ss_pred cEEEEEeCCCCc------------------CcchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCccc---eeecccc--
Confidence 688999998774 124556666666666666665 77899999987421 1222211
Q ss_pred CCcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHc--cCccEEEEEEeCCcccCCCCCCCCCCChhHHHHHHH
Q 013923 183 HYCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEAS--NRQYHVLVIIADGQVTRNPDTPAGRLSPQEQATVNS 260 (434)
Q Consensus 183 ~~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~--~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~a 260 (434)
....+.+.+.-... .. ...|.|.+...++.+.+...+. .....+|++||||..++. .....+.
T Consensus 59 --~~~~~~~~~~~~~~-~~-~~~~~t~~~~al~~~~~~~~~~~~~~~~~~lvvitDg~~~~~-----------~~~~~~~ 123 (161)
T cd00198 59 --DTDKADLLEAIDAL-KK-GLGGGTNIGAALRLALELLKSAKRPNARRVIILLTDGEPNDG-----------PELLAEA 123 (161)
T ss_pred --cCCHHHHHHHHHhc-cc-CCCCCccHHHHHHHHHHHhcccCCCCCceEEEEEeCCCCCCC-----------cchhHHH
Confidence 12333443332221 11 4789999999999999988653 456889999999988752 1245556
Q ss_pred HHHhccCCcEEEEEeccc-CCcccccccCCC
Q 013923 261 IVAASHYPLSIILVGVGD-GPWDSVQQFDDN 290 (434)
Q Consensus 261 Iv~AS~~PLSIIiVGVGd-~~f~~m~~lD~~ 290 (434)
+..+....+.|.+||+|+ .+-..++.|+..
T Consensus 124 ~~~~~~~~v~v~~v~~g~~~~~~~l~~l~~~ 154 (161)
T cd00198 124 ARELRKLGITVYTIGIGDDANEDELKEIADK 154 (161)
T ss_pred HHHHHHcCCEEEEEEcCCCCCHHHHHHHhcc
Confidence 666667799999999998 666667766653
No 15
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=98.32 E-value=8e-06 Score=75.90 Aligned_cols=151 Identities=13% Similarity=0.245 Sum_probs=98.4
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCCcceEeeCCCCCCCCcceecCCCCCC
Q 013923 105 SNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDEDNLIPCFGFGDASTHDQYVFSFYPDNHY 184 (434)
Q Consensus 105 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~d~~ip~~GFGa~~~~~~~vf~~~~~~~~ 184 (434)
.++++.||-+.|=. + +..+.|-..+..++..+..+..+-++.|+..... ++.+.... .
T Consensus 14 ~~vv~llD~SgSM~--~----------------~~l~~ak~~~~~ll~~l~~~d~v~lv~F~~~~~~---~~~~~~~~-~ 71 (190)
T cd01463 14 KDIVILLDVSGSMT--G----------------QRLHLAKQTVSSILDTLSDNDFFNIITFSNEVNP---VVPCFNDT-L 71 (190)
T ss_pred ceEEEEEECCCCCC--c----------------HHHHHHHHHHHHHHHhCCCCCEEEEEEeCCCeeE---Eeeecccc-e
Confidence 78999999998853 1 3456666666777777787778999999987432 22221110 0
Q ss_pred cCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHH---c------cCccEEEEEEeCCcccCCCCCCCCCCChhHH
Q 013923 185 CHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEA---S------NRQYHVLVIIADGQVTRNPDTPAGRLSPQEQ 255 (434)
Q Consensus 185 ~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~---~------~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~ 255 (434)
.....+-.+...+.+..++..|.|++...|+.|.+..++ . ...-.++++||||..++ ..
T Consensus 72 ~~~~~~~~~~~~~~l~~l~~~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~------------~~ 139 (190)
T cd01463 72 VQATTSNKKVLKEALDMLEAKGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVPEN------------YK 139 (190)
T ss_pred EecCHHHHHHHHHHHhhCCCCCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCCCCc------------Hh
Confidence 000111122334456678889999999999999987664 1 11235789999998875 34
Q ss_pred HHHHHHHHhc--cCCcEEEEEecccC--CcccccccCC
Q 013923 256 ATVNSIVAAS--HYPLSIILVGVGDG--PWDSVQQFDD 289 (434)
Q Consensus 256 ~T~~aIv~AS--~~PLSIIiVGVGd~--~f~~m~~lD~ 289 (434)
+.++++.... ..|+-|..||||.+ +...|++|=.
T Consensus 140 ~~~~~~~~~~~~~~~v~i~tigiG~~~~d~~~L~~lA~ 177 (190)
T cd01463 140 EIFDKYNWDKNSEIPVRVFTYLIGREVTDRREIQWMAC 177 (190)
T ss_pred HHHHHhcccccCCCcEEEEEEecCCccccchHHHHHHh
Confidence 5555554322 35899999999975 5777776643
No 16
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=6e-08 Score=73.63 Aligned_cols=47 Identities=38% Similarity=1.075 Sum_probs=41.5
Q ss_pred CccCccccCCcc-ceecCCCC-CchhhhcCC-----CCCCCcCcccccccccCC
Q 013923 388 PVCPICLTNPKD-MAFGCGHT-TCKDCGTTI-----SSCPMCREPITTRLRLYT 434 (434)
Q Consensus 388 ~~CpICl~~~kd-v~l~CGH~-fC~~Ci~~l-----~~CPlCR~~i~~~i~ly~ 434 (434)
..|.||++.+.| +...|||. +|..|+.++ -.||+||++|...|+.|+
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~ 61 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYR 61 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhc
Confidence 589999999999 77799999 899998754 479999999999999885
No 17
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=98.25 E-value=1.1e-05 Score=74.39 Aligned_cols=170 Identities=12% Similarity=0.128 Sum_probs=105.5
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCCcceEeeCCCCCCCCcceecCCC
Q 013923 105 SNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFD---EDNLIPCFGFGDASTHDQYVFSFYPD 181 (434)
Q Consensus 105 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD---~d~~ip~~GFGa~~~~~~~vf~~~~~ 181 (434)
+++.+.||-|.|=+ ..|-+.++...+..+++.+. ++-.+-++-|+.... .++.|...
T Consensus 1 ~Dv~~vlD~SgSm~-----------------~~~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~~~---~~~~l~~~ 60 (186)
T cd01471 1 LDLYLLVDGSGSIG-----------------YSNWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAK---ELIRLSSP 60 (186)
T ss_pred CcEEEEEeCCCCcc-----------------chhhHHHHHHHHHHHHHhcccCCCceEEEEEEecCCce---EEEECCCc
Confidence 36788899876632 11235667777777777664 345788999987532 23444321
Q ss_pred CCCcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHc----cCccEEEEEEeCCcccCCCCCCCCCCChhHHHH
Q 013923 182 NHYCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEAS----NRQYHVLVIIADGQVTRNPDTPAGRLSPQEQAT 257 (434)
Q Consensus 182 ~~~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~----~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T 257 (434)
. -...+.+++.-+.+.......|-|+++..|+.|.+...+. ...-.+++|||||..++ ..++
T Consensus 61 ~--~~~~~~~~~~i~~l~~~~~~~G~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~------------~~~~ 126 (186)
T cd01471 61 N--STNKDLALNAIRALLSLYYPNGSTNTTSALLVVEKHLFDTRGNRENAPQLVIIMTDGIPDS------------KFRT 126 (186)
T ss_pred c--ccchHHHHHHHHHHHhCcCCCCCccHHHHHHHHHHHhhccCCCcccCceEEEEEccCCCCC------------Ccch
Confidence 1 1123333333333334455689999999999999887642 12235778889998765 2234
Q ss_pred HHHHHHhccCCcEEEEEeccc-CCcccccccCCCC-Ccccccceeeeeccccc
Q 013923 258 VNSIVAASHYPLSIILVGVGD-GPWDSVQQFDDNI-PQRAFDNFQFVNFTKIM 308 (434)
Q Consensus 258 ~~aIv~AS~~PLSIIiVGVGd-~~f~~m~~lD~~~-~~r~rDnvqFV~f~~~~ 308 (434)
+++..++.+.++-|.+||||. .+.+.|+.|-+.- ..-..++.-+.+|+++.
T Consensus 127 ~~~a~~l~~~gv~v~~igiG~~~d~~~l~~ia~~~~~~~~~~~~~~~~~~~~~ 179 (186)
T cd01471 127 LKEARKLRERGVIIAVLGVGQGVNHEENRSLVGCDPDDSPCPLYLQSSWSEVQ 179 (186)
T ss_pred hHHHHHHHHCCCEEEEEEeehhhCHHHHHHhcCCCCCCCCCCeeecCCHHHHH
Confidence 455555556789999999997 4677777776632 11224666666666653
No 18
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.19 E-value=5.8e-07 Score=87.77 Aligned_cols=45 Identities=29% Similarity=0.821 Sum_probs=36.1
Q ss_pred CCCccCccccCCcc---------ceecCCCCCchhhhcCC----CCCCCcCccccccc
Q 013923 386 VEPVCPICLTNPKD---------MAFGCGHTTCKDCGTTI----SSCPMCREPITTRL 430 (434)
Q Consensus 386 e~~~CpICl~~~kd---------v~l~CGH~fC~~Ci~~l----~~CPlCR~~i~~~i 430 (434)
++..|+||++.+.+ +..+|+|.||..|+..| ..||+||.++...+
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~ 230 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVI 230 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEe
Confidence 45799999997543 23489999999999765 68999999987654
No 19
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=98.16 E-value=2e-05 Score=69.28 Aligned_cols=145 Identities=12% Similarity=0.214 Sum_probs=94.0
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc---cCCCCCcceEeeCCCCCCCCcceecCCCC
Q 013923 106 NLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSP---FDEDNLIPCFGFGDASTHDQYVFSFYPDN 182 (434)
Q Consensus 106 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~---yD~d~~ip~~GFGa~~~~~~~vf~~~~~~ 182 (434)
++.+.+|.|.|=.. ..++.+...+..++.. .+.+-.+-++.|++... .++.+....
T Consensus 2 di~~llD~S~Sm~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~~~---~~~~~~~~~ 60 (161)
T cd01450 2 DIVFLLDGSESVGP------------------ENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVR---VEFSLNDYK 60 (161)
T ss_pred cEEEEEeCCCCcCH------------------HHHHHHHHHHHHHHHheeeCCCceEEEEEEEcCCce---EEEECCCCC
Confidence 67888999876320 1444555555555444 44577899999998532 233332221
Q ss_pred CCcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHcc----CccEEEEEEeCCcccCCCCCCCCCCChhHHHHH
Q 013923 183 HYCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEASN----RQYHVLVIIADGQVTRNPDTPAGRLSPQEQATV 258 (434)
Q Consensus 183 ~~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~~----~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~ 258 (434)
..+++++......... .|-|++...|+.+.+...+.. ..-.++++||||..++. .+..
T Consensus 61 ----~~~~~~~~i~~~~~~~--~~~t~~~~al~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~~------------~~~~ 122 (161)
T cd01450 61 ----SKDDLLKAVKNLKYLG--GGGTNTGKALQYALEQLFSESNARENVPKVIIVLTDGRSDDG------------GDPK 122 (161)
T ss_pred ----CHHHHHHHHHhcccCC--CCCccHHHHHHHHHHHhcccccccCCCCeEEEEECCCCCCCC------------cchH
Confidence 3555555544322111 147999999999999876542 45778899999988762 1344
Q ss_pred HHHHHhccCCcEEEEEecccCCcccccccCC
Q 013923 259 NSIVAASHYPLSIILVGVGDGPWDSVQQFDD 289 (434)
Q Consensus 259 ~aIv~AS~~PLSIIiVGVGd~~f~~m~~lD~ 289 (434)
+++....+..+-|++||||..+.+.|++|-+
T Consensus 123 ~~~~~~~~~~v~v~~i~~g~~~~~~l~~la~ 153 (161)
T cd01450 123 EAAAKLKDEGIKVFVVGVGPADEEELREIAS 153 (161)
T ss_pred HHHHHHHHCCCEEEEEeccccCHHHHHHHhC
Confidence 4455555568999999999978888887755
No 20
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.16 E-value=1.2e-05 Score=73.70 Aligned_cols=145 Identities=21% Similarity=0.315 Sum_probs=94.3
Q ss_pred eeceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCCcceEeeCCCCCCCCcceecCC
Q 013923 104 SSNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFD---EDNLIPCFGFGDASTHDQYVFSFYP 180 (434)
Q Consensus 104 ~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD---~d~~ip~~GFGa~~~~~~~vf~~~~ 180 (434)
.+++++.||-+.|=. |+ . ...-.+|+..+...|...+ ++..+-++.|+.... .++++..
T Consensus 3 ~~~v~~llD~SgSM~--~~------~-------~~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~a~---~~~~l~~ 64 (176)
T cd01464 3 RLPIYLLLDTSGSMA--GE------P-------IEALNQGLQMLQSELRQDPYALESVEISVITFDSAAR---VIVPLTP 64 (176)
T ss_pred CCCEEEEEECCCCCC--Ch------H-------HHHHHHHHHHHHHHHhcChhhccccEEEEEEecCCce---EecCCcc
Confidence 468899999987742 11 1 1233456666655555432 345799999988532 2333321
Q ss_pred CCCCcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHccCc---------cEEEEEEeCCcccCCCCCCCCCCC
Q 013923 181 DNHYCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEASNRQ---------YHVLVIIADGQVTRNPDTPAGRLS 251 (434)
Q Consensus 181 ~~~~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~~~~---------Y~VLlIiTDG~i~d~~~~~~~~~~ 251 (434)
+.. .....+...|-|++...|+.|.+...+.... -.++++||||..++
T Consensus 65 -------~~~------~~~~~l~~~GgT~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~---------- 121 (176)
T cd01464 65 -------LES------FQPPRLTASGGTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTD---------- 121 (176)
T ss_pred -------HHh------cCCCcccCCCCCcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCc----------
Confidence 111 1245667889999999999999986542111 24678899999876
Q ss_pred hhHHHHHHHHHHhccCCcEEEEEeccc-CCcccccccCCC
Q 013923 252 PQEQATVNSIVAASHYPLSIILVGVGD-GPWDSVQQFDDN 290 (434)
Q Consensus 252 ~~~~~T~~aIv~AS~~PLSIIiVGVGd-~~f~~m~~lD~~ 290 (434)
+.....+++.++-...+-|..||||. .+.+.|++|-+.
T Consensus 122 -~~~~~~~~~~~~~~~~~~i~~igiG~~~~~~~L~~ia~~ 160 (176)
T cd01464 122 -DLTAAIERIKEARDSKGRIVACAVGPKADLDTLKQITEG 160 (176)
T ss_pred -hHHHHHHHHHhhcccCCcEEEEEeccccCHHHHHHHHCC
Confidence 23444577887777789999999995 677778877654
No 21
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=2.6e-07 Score=91.33 Aligned_cols=48 Identities=38% Similarity=1.101 Sum_probs=45.1
Q ss_pred CCccCccccCCcc-ceecCCCC-CchhhhcCCCCCCCcCcccccccccCC
Q 013923 387 EPVCPICLTNPKD-MAFGCGHT-TCKDCGTTISSCPMCREPITTRLRLYT 434 (434)
Q Consensus 387 ~~~CpICl~~~kd-v~l~CGH~-fC~~Ci~~l~~CPlCR~~i~~~i~ly~ 434 (434)
...|.||++.++| +.++|||. .|.+|+.++..||+||+.|.+.+|+|+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~rvvrif~ 349 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNECPICRQYIVRVVRIFR 349 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccccccCchHHHHHHHHHhhhc
Confidence 5799999999999 77899999 899999999999999999999999985
No 22
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=98.05 E-value=4.6e-05 Score=67.38 Aligned_cols=139 Identities=18% Similarity=0.278 Sum_probs=95.4
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCCcceEeeCCCCCCCCcceecCCCCCCc
Q 013923 106 NLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDEDNLIPCFGFGDASTHDQYVFSFYPDNHYC 185 (434)
Q Consensus 106 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~d~~ip~~GFGa~~~~~~~vf~~~~~~~~~ 185 (434)
+++|.||-|.|=.+. +...+..++|...+..++..+..+ .|-++.|+... ..++.+ .
T Consensus 1 dvv~v~D~SgSM~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~-~v~l~~f~~~~---~~~~~~------t 57 (172)
T PF13519_consen 1 DVVFVLDNSGSMNGY-------------DGNRTRIDQAKDALNELLANLPGD-RVGLVSFSDSS---RTLSPL------T 57 (172)
T ss_dssp EEEEEEE-SGGGGTT-------------TSSS-HHHHHHHHHHHHHHHHTTS-EEEEEEESTSC---EEEEEE------E
T ss_pred CEEEEEECCcccCCC-------------CCCCcHHHHHHHHHHHHHHHCCCC-EEEEEEecccc---cccccc------c
Confidence 578999999886432 113578899999999999988755 99999999853 112222 3
Q ss_pred CCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHccCccEEEEEEeCCcccCCCCCCCCCCChhHHHHHHHHHHhc
Q 013923 186 HGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEASNRQYHVLVIIADGQVTRNPDTPAGRLSPQEQATVNSIVAAS 265 (434)
Q Consensus 186 ~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~AS 265 (434)
...+.+.++.++..+.....|.|.+...|+.|.+........=-++|+||||.-+. ...+++..+.
T Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~t~~~~al~~a~~~~~~~~~~~~~iv~iTDG~~~~--------------~~~~~~~~~~ 123 (172)
T PF13519_consen 58 SDKDELKNALNKLSPQGMPGGGTNLYDALQEAAKMLASSDNRRRAIVLITDGEDNS--------------SDIEAAKALK 123 (172)
T ss_dssp SSHHHHHHHHHTHHHHG--SSS--HHHHHHHHHHHHHC-SSEEEEEEEEES-TTHC--------------HHHHHHHHHH
T ss_pred ccHHHHHHHhhcccccccCccCCcHHHHHHHHHHHHHhCCCCceEEEEecCCCCCc--------------chhHHHHHHH
Confidence 56777777777776666778999999999999998876543345667889996653 3334666777
Q ss_pred cCCcEEEEEecccCCc
Q 013923 266 HYPLSIILVGVGDGPW 281 (434)
Q Consensus 266 ~~PLSIIiVGVGd~~f 281 (434)
...+.|.+||+|...=
T Consensus 124 ~~~i~i~~v~~~~~~~ 139 (172)
T PF13519_consen 124 QQGITIYTVGIGSDSD 139 (172)
T ss_dssp CTTEEEEEEEES-TT-
T ss_pred HcCCeEEEEEECCCcc
Confidence 8899999999998754
No 23
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=98.04 E-value=4e-05 Score=69.13 Aligned_cols=142 Identities=13% Similarity=0.229 Sum_probs=90.5
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCCcceEeeCCCCCCCCcceecCCCCCC
Q 013923 105 SNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDEDNLIPCFGFGDASTHDQYVFSFYPDNHY 184 (434)
Q Consensus 105 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~d~~ip~~GFGa~~~~~~~vf~~~~~~~~ 184 (434)
+++++.||.+.|=. + +..+.|-.++..++..+.++..+-+++|+...... +++.+...
T Consensus 1 ~~v~~vlD~S~SM~--~----------------~rl~~ak~a~~~l~~~l~~~~~~~li~F~~~~~~~---~~~~~~~~- 58 (155)
T cd01466 1 VDLVAVLDVSGSMA--G----------------DKLQLVKHALRFVISSLGDADRLSIVTFSTSAKRL---SPLRRMTA- 58 (155)
T ss_pred CcEEEEEECCCCCC--c----------------HHHHHHHHHHHHHHHhCCCcceEEEEEecCCcccc---CCCcccCH-
Confidence 36789999987742 1 24455555555666565555679999999864322 22322111
Q ss_pred cCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHcc--CccEEEEEEeCCcccCCCCCCCCCCChhHHHHHHHHH
Q 013923 185 CHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEASN--RQYHVLVIIADGQVTRNPDTPAGRLSPQEQATVNSIV 262 (434)
Q Consensus 185 ~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~~--~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv 262 (434)
... +...+.+..+...|-|+...-|+.+.+..++.. +.-.++++||||..++ . .++.
T Consensus 59 -~~~----~~~~~~i~~~~~~g~T~~~~al~~a~~~~~~~~~~~~~~~iillTDG~~~~------------~----~~~~ 117 (155)
T cd01466 59 -KGK----RSAKRVVDGLQAGGGTNVVGGLKKALKVLGDRRQKNPVASIMLLSDGQDNH------------G----AVVL 117 (155)
T ss_pred -HHH----HHHHHHHHhccCCCCccHHHHHHHHHHHHhhcccCCCceEEEEEcCCCCCc------------c----hhhh
Confidence 112 223344445677889999999999999876532 2346789999998764 1 2233
Q ss_pred HhccCCcEEEEEeccc-CCcccccccCC
Q 013923 263 AASHYPLSIILVGVGD-GPWDSVQQFDD 289 (434)
Q Consensus 263 ~AS~~PLSIIiVGVGd-~~f~~m~~lD~ 289 (434)
.+.+.++-|..||+|. .+...|++|=+
T Consensus 118 ~~~~~~v~v~~igig~~~~~~~l~~iA~ 145 (155)
T cd01466 118 RADNAPIPIHTFGLGASHDPALLAFIAE 145 (155)
T ss_pred cccCCCceEEEEecCCCCCHHHHHHHHh
Confidence 4556799999999994 55666666543
No 24
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=1.9e-06 Score=90.86 Aligned_cols=43 Identities=42% Similarity=0.943 Sum_probs=36.1
Q ss_pred CCccCccccCCcc-ceecCCCCCchhhhc---------CCCCCCCcCcccccc
Q 013923 387 EPVCPICLTNPKD-MAFGCGHTTCKDCGT---------TISSCPMCREPITTR 429 (434)
Q Consensus 387 ~~~CpICl~~~kd-v~l~CGH~fC~~Ci~---------~l~~CPlCR~~i~~~ 429 (434)
+..||||++.+.- +.+.|||.||+.|+- .++.||+||..|..+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k 238 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLK 238 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence 5789999998876 666899999999964 347899999998763
No 25
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=98.01 E-value=0.00011 Score=65.99 Aligned_cols=146 Identities=15% Similarity=0.201 Sum_probs=95.3
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCCcceEeeCCCCCCCCcceecCCCCCC
Q 013923 105 SNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDEDNLIPCFGFGDASTHDQYVFSFYPDNHY 184 (434)
Q Consensus 105 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~d~~ip~~GFGa~~~~~~~vf~~~~~~~~ 184 (434)
+|+.+.+|.|.|=. + ...+.|..++..++..+..+..+-++.|+.... .++.+.+.
T Consensus 1 ~~~~~vlD~S~SM~--~----------------~~~~~~k~a~~~~~~~l~~~~~v~li~f~~~~~---~~~~~~~~--- 56 (170)
T cd01465 1 LNLVFVIDRSGSMD--G----------------PKLPLVKSALKLLVDQLRPDDRLAIVTYDGAAE---TVLPATPV--- 56 (170)
T ss_pred CcEEEEEECCCCCC--C----------------hhHHHHHHHHHHHHHhCCCCCEEEEEEecCCcc---EEecCccc---
Confidence 57899999998742 1 126777777778888887777899999998632 22222211
Q ss_pred cCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHcc--CccEEEEEEeCCcccCCCCCCCCCCChhHHHHHHHHH
Q 013923 185 CHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEASN--RQYHVLVIIADGQVTRNPDTPAGRLSPQEQATVNSIV 262 (434)
Q Consensus 185 ~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~~--~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv 262 (434)
...+.++ +.+.+++..|.|++...++.|.+.+++.. ..--.+++||||..++.. .+.+...+++.
T Consensus 57 -~~~~~l~----~~l~~~~~~g~T~~~~al~~a~~~~~~~~~~~~~~~ivl~TDG~~~~~~--------~~~~~~~~~~~ 123 (170)
T cd01465 57 -RDKAAIL----AAIDRLTAGGSTAGGAGIQLGYQEAQKHFVPGGVNRILLATDGDFNVGE--------TDPDELARLVA 123 (170)
T ss_pred -chHHHHH----HHHHcCCCCCCCCHHHHHHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCC--------CCHHHHHHHHH
Confidence 1223333 33445666899999999999999876532 222557889999876411 12355566666
Q ss_pred HhccCCcEEEEEecccC-Cccccccc
Q 013923 263 AASHYPLSIILVGVGDG-PWDSVQQF 287 (434)
Q Consensus 263 ~AS~~PLSIIiVGVGd~-~f~~m~~l 287 (434)
.+.+..+-|..||||.. +...|+++
T Consensus 124 ~~~~~~v~i~~i~~g~~~~~~~l~~i 149 (170)
T cd01465 124 QKRESGITLSTLGFGDNYNEDLMEAI 149 (170)
T ss_pred HhhcCCeEEEEEEeCCCcCHHHHHHH
Confidence 66667888999999943 33444444
No 26
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.01 E-value=6.9e-07 Score=64.56 Aligned_cols=35 Identities=43% Similarity=1.048 Sum_probs=28.7
Q ss_pred ccCccccCCcc----ceecCCCCCchhhhcCC----CCCCCcC
Q 013923 389 VCPICLTNPKD----MAFGCGHTTCKDCGTTI----SSCPMCR 423 (434)
Q Consensus 389 ~CpICl~~~kd----v~l~CGH~fC~~Ci~~l----~~CPlCR 423 (434)
.|+||++.+.. +.++|||.||.+|+..| ..||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 69999988742 66799999999998865 6899997
No 27
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.00 E-value=2.1e-06 Score=89.33 Aligned_cols=45 Identities=27% Similarity=0.514 Sum_probs=39.0
Q ss_pred cCCCCccCccccCCcc-ceecCCCCCchhhhcCC----CCCCCcCccccc
Q 013923 384 ALVEPVCPICLTNPKD-MAFGCGHTTCKDCGTTI----SSCPMCREPITT 428 (434)
Q Consensus 384 ~~e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~l----~~CPlCR~~i~~ 428 (434)
++..+.|+||++.+.+ +.++|||.||..|+..+ ..||+||..+..
T Consensus 23 Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 5677999999999998 88899999999998743 579999998764
No 28
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=97.99 E-value=3e-06 Score=65.06 Aligned_cols=42 Identities=29% Similarity=0.445 Sum_probs=36.7
Q ss_pred CCccCccccCCcc-ceecCCCCCchhhhcCC----CCCCCcCccccc
Q 013923 387 EPVCPICLTNPKD-MAFGCGHTTCKDCGTTI----SSCPMCREPITT 428 (434)
Q Consensus 387 ~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~l----~~CPlCR~~i~~ 428 (434)
++.||||.+.+++ +.++|||.||..|+..+ ..||+|+.+++.
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 3689999999999 88899999999998754 579999999854
No 29
>PHA02926 zinc finger-like protein; Provisional
Probab=97.97 E-value=2e-06 Score=82.57 Aligned_cols=45 Identities=29% Similarity=0.628 Sum_probs=35.1
Q ss_pred CCCCccCccccCCc------c----ceecCCCCCchhhhcCCC----------CCCCcCcccccc
Q 013923 385 LVEPVCPICLTNPK------D----MAFGCGHTTCKDCGTTIS----------SCPMCREPITTR 429 (434)
Q Consensus 385 ~e~~~CpICl~~~k------d----v~l~CGH~fC~~Ci~~l~----------~CPlCR~~i~~~ 429 (434)
.++..|+||++... + +..+|+|.||..|+..|. .||+||..+...
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I 232 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNI 232 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence 34679999998641 2 445999999999998652 499999998754
No 30
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=97.96 E-value=0.00021 Score=65.28 Aligned_cols=151 Identities=14% Similarity=0.149 Sum_probs=92.2
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC-CCCcceEeeCCCCCCCC--cceecCCCC
Q 013923 106 NLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDE-DNLIPCFGFGDASTHDQ--YVFSFYPDN 182 (434)
Q Consensus 106 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~-d~~ip~~GFGa~~~~~~--~vf~~~~~~ 182 (434)
.+.+.||.+.|=.. .+..+.|-.++..++..... +-.+-+|+|+...+... .++...+-+
T Consensus 2 ~v~~llD~SgSM~~-----------------~~kl~~ak~a~~~l~~~l~~~~d~~~l~~F~~~~~~~~~~~~~~~~~~~ 64 (174)
T cd01454 2 AVTLLLDLSGSMRS-----------------DRRIDVAKKAAVLLAEALEACGVPHAILGFTTDAGGRERVRWIKIKDFD 64 (174)
T ss_pred EEEEEEECCCCCCC-----------------CcHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCccceEEEEecCcc
Confidence 46788898887421 13444455444444444432 55799999987531111 122110101
Q ss_pred CCcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHccCccEEEEEEeCCcccCCCCCCCCCCChhHHHHHHHHH
Q 013923 183 HYCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEASNRQYHVLVIIADGQVTRNPDTPAGRLSPQEQATVNSIV 262 (434)
Q Consensus 183 ~~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv 262 (434)
.. +..+.++.+..+...|-|.+...|+.+.+...+....--++++||||.-++.. +..+++. ..++.++++.
T Consensus 65 ---~~---~~~~~~~~l~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~iiliTDG~~~~~~-~~~~~~~-~~~~~~~~~~ 136 (174)
T cd01454 65 ---ES---LHERARKRLAALSPGGNTRDGAAIRHAAERLLARPEKRKILLVISDGEPNDLD-YYEGNVF-ATEDALRAVI 136 (174)
T ss_pred ---cc---cchhHHHHHHccCCCCCCcHHHHHHHHHHHHhcCCCcCcEEEEEeCCCcCccc-ccCcchh-HHHHHHHHHH
Confidence 01 11222444455667788999999999999887554445678999999887632 2223321 2455666688
Q ss_pred HhccCCcEEEEEecccCCc
Q 013923 263 AASHYPLSIILVGVGDGPW 281 (434)
Q Consensus 263 ~AS~~PLSIIiVGVGd~~f 281 (434)
+|-+..+.+..||||+...
T Consensus 137 ~~~~~gi~v~~igig~~~~ 155 (174)
T cd01454 137 EARKLGIEVFGITIDRDAT 155 (174)
T ss_pred HHHhCCcEEEEEEecCccc
Confidence 8888899999999998753
No 31
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.94 E-value=1.6e-06 Score=61.25 Aligned_cols=33 Identities=45% Similarity=1.212 Sum_probs=26.3
Q ss_pred cCccccCCcc--ceecCCCCCchhhhcC----CCCCCCc
Q 013923 390 CPICLTNPKD--MAFGCGHTTCKDCGTT----ISSCPMC 422 (434)
Q Consensus 390 CpICl~~~kd--v~l~CGH~fC~~Ci~~----l~~CPlC 422 (434)
|+||++.+.+ +.++|||.||.+|+.+ ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 8999999999 4569999999999874 3678887
No 32
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=4.5e-06 Score=84.84 Aligned_cols=47 Identities=36% Similarity=1.032 Sum_probs=40.7
Q ss_pred CCccCccccCCcc-ceecCCCC-CchhhhcCC----CCCCCcCcccccccccC
Q 013923 387 EPVCPICLTNPKD-MAFGCGHT-TCKDCGTTI----SSCPMCREPITTRLRLY 433 (434)
Q Consensus 387 ~~~CpICl~~~kd-v~l~CGH~-fC~~Ci~~l----~~CPlCR~~i~~~i~ly 433 (434)
-..|.||+...+| +.+||+|. .|..|++.+ ..||+||++|..-+.+|
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~ 342 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIY 342 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheec
Confidence 4689999999999 88899999 899999854 56999999998876654
No 33
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.83 E-value=0.0002 Score=64.84 Aligned_cols=142 Identities=15% Similarity=0.230 Sum_probs=90.4
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCCcceEeeCCCCCCCCcceecCCCC
Q 013923 106 NLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFD---EDNLIPCFGFGDASTHDQYVFSFYPDN 182 (434)
Q Consensus 106 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD---~d~~ip~~GFGa~~~~~~~vf~~~~~~ 182 (434)
++.+.+|-+.|=+ ...++++...+-.++..++ ++..|-++.|+.... .+|.++.
T Consensus 2 Dv~~vlD~S~Sm~------------------~~~~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~~~~---~~~~l~~-- 58 (164)
T cd01482 2 DIVFLVDGSWSIG------------------RSNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDPR---TEFDLNA-- 58 (164)
T ss_pred CEEEEEeCCCCcC------------------hhhHHHHHHHHHHHHhheeeCCCceEEEEEEECCCee---EEEecCC--
Confidence 5678888876642 1235556665555555553 567899999998642 2344421
Q ss_pred CCcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHc-----cCccEEEEEEeCCcccCCCCCCCCCCChhHHHH
Q 013923 183 HYCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEAS-----NRQYHVLVIIADGQVTRNPDTPAGRLSPQEQAT 257 (434)
Q Consensus 183 ~~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~-----~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T 257 (434)
....+.++++..++- ...|.|+....|+.|.+...+. ...-.++||||||.-++ +.++.
T Consensus 59 --~~~~~~l~~~l~~~~---~~~g~T~~~~aL~~a~~~~~~~~~~~r~~~~k~iillTDG~~~~-----------~~~~~ 122 (164)
T cd01482 59 --YTSKEDVLAAIKNLP---YKGGNTRTGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQD-----------DVELP 122 (164)
T ss_pred --CCCHHHHHHHHHhCc---CCCCCChHHHHHHHHHHHhcccccCCCCCCCEEEEEEcCCCCCc-----------hHHHH
Confidence 234566666554331 1478899999999888754221 22457889999998764 23333
Q ss_pred HHHHHHhccCCcEEEEEecccCCcccccccCC
Q 013923 258 VNSIVAASHYPLSIILVGVGDGPWDSVQQFDD 289 (434)
Q Consensus 258 ~~aIv~AS~~PLSIIiVGVGd~~f~~m~~lD~ 289 (434)
.+.+. ...+-|+.||+|+.+...|++|-+
T Consensus 123 a~~lk---~~gi~i~~ig~g~~~~~~L~~ia~ 151 (164)
T cd01482 123 ARVLR---NLGVNVFAVGVKDADESELKMIAS 151 (164)
T ss_pred HHHHH---HCCCEEEEEecCcCCHHHHHHHhC
Confidence 34443 468899999999987777777655
No 34
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.82 E-value=7.9e-06 Score=59.31 Aligned_cols=36 Identities=33% Similarity=0.949 Sum_probs=30.1
Q ss_pred ccCccccCCc--c--ceecCCCCCchhhhcCCC----CCCCcCc
Q 013923 389 VCPICLTNPK--D--MAFGCGHTTCKDCGTTIS----SCPMCRE 424 (434)
Q Consensus 389 ~CpICl~~~k--d--v~l~CGH~fC~~Ci~~l~----~CPlCR~ 424 (434)
.|++|++.+. . +.++|||.||..|+..+. .||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4899998882 2 666999999999998765 8999984
No 35
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.79 E-value=0.00013 Score=68.60 Aligned_cols=160 Identities=14% Similarity=0.179 Sum_probs=95.2
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCCcceEeeCCCCCCCC---cceecCCC
Q 013923 105 SNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDEDNLIPCFGFGDASTHDQ---YVFSFYPD 181 (434)
Q Consensus 105 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~d~~ip~~GFGa~~~~~~---~vf~~~~~ 181 (434)
.++++.||.+.|=... -....+..+.|...+..++..+.++..+-++.|+....... .+++..+.
T Consensus 21 ~~vv~vlD~SgSM~~~------------~~~~~~rl~~ak~a~~~~l~~l~~~~~v~lv~F~~~~~~~~~~~~~~p~~~~ 88 (206)
T cd01456 21 PNVAIVLDNSGSMREV------------DGGGETRLDNAKAALDETANALPDGTRLGLWTFSGDGDNPLDVRVLVPKGCL 88 (206)
T ss_pred CcEEEEEeCCCCCcCC------------CCCcchHHHHHHHHHHHHHHhCCCCceEEEEEecCCCCCCcccccccccccc
Confidence 6899999999874310 01134667777777777777787788999999998543211 11111010
Q ss_pred CCCcCCHH-HHHHHHHHhcCCcc-ccCCCChHHHHHHHHHHHHHccCccEEEEEEeCCcccCCCCCCCCCCChhHHHHHH
Q 013923 182 NHYCHGFE-EVLARYREILPHLK-LSGPTSFAPIIDAAIDIVEASNRQYHVLVIIADGQVTRNPDTPAGRLSPQEQATVN 259 (434)
Q Consensus 182 ~~~~~G~e-gvl~~Yr~~~~~v~-l~GPT~fapiI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~ 259 (434)
-....++. .-.+...+.+..++ ..|-|+....|+.+.+..+ .+.-..+|+||||..++. . +..+...
T Consensus 89 ~~~~~~~~~~~~~~l~~~i~~i~~~~G~T~l~~aL~~a~~~l~--~~~~~~iillTDG~~~~~------~---~~~~~~~ 157 (206)
T cd01456 89 TAPVNGFPSAQRSALDAALNSLQTPTGWTPLAAALAEAAAYVD--PGRVNVVVLITDGEDTCG------P---DPCEVAR 157 (206)
T ss_pred ccccCCCCcccHHHHHHHHHhhcCCCCcChHHHHHHHHHHHhC--CCCcceEEEEcCCCccCC------C---CHHHHHH
Confidence 00111221 11233344566666 7899999999999988775 233357788899987651 1 1223344
Q ss_pred HHHHh--ccCCcEEEEEecccC-Cccccccc
Q 013923 260 SIVAA--SHYPLSIILVGVGDG-PWDSVQQF 287 (434)
Q Consensus 260 aIv~A--S~~PLSIIiVGVGd~-~f~~m~~l 287 (434)
.+.+. ..-++.|-+||||.. +-..|+++
T Consensus 158 ~~~~~~~~~~~i~i~~igiG~~~~~~~l~~i 188 (206)
T cd01456 158 ELAKRRTPAPPIKVNVIDFGGDADRAELEAI 188 (206)
T ss_pred HHHHhcCCCCCceEEEEEecCcccHHHHHHH
Confidence 44433 124788999999975 23444444
No 36
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=97.73 E-value=0.00063 Score=60.97 Aligned_cols=134 Identities=19% Similarity=0.314 Sum_probs=85.5
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---CCCcceEeeCCCCCCCCcceecCCC
Q 013923 105 SNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDE---DNLIPCFGFGDASTHDQYVFSFYPD 181 (434)
Q Consensus 105 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~---d~~ip~~GFGa~~~~~~~vf~~~~~ 181 (434)
+++.+.+|-|.|-. ..++++...+..++..+.. .-.+-+..|+.... ..-.|.+...
T Consensus 1 ldv~~llD~S~Sm~-------------------~~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~-~~~~~~l~~~ 60 (163)
T cd01476 1 LDLLFVLDSSGSVR-------------------GKFEKYKKYIERIVEGLEIGPTATRVALITYSGRGR-QRVRFNLPKH 60 (163)
T ss_pred CCEEEEEeCCcchh-------------------hhHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCc-eEEEecCCCC
Confidence 46888999876642 1245566666666666654 57788999988521 1123444221
Q ss_pred CCCcCCHHHHHHHHHHhcCCcc-ccCCCChHHHHHHHHHHHHHc----cCccEEEEEEeCCcccCCCCCCCCCCChhHHH
Q 013923 182 NHYCHGFEEVLARYREILPHLK-LSGPTSFAPIIDAAIDIVEAS----NRQYHVLVIIADGQVTRNPDTPAGRLSPQEQA 256 (434)
Q Consensus 182 ~~~~~G~egvl~~Yr~~~~~v~-l~GPT~fapiI~~a~~~~~~~----~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~ 256 (434)
...+.++++-. .++ ..|.|+....|+.+.+...+. .....+++|||||..++ +..+
T Consensus 61 ----~~~~~l~~~i~----~l~~~gg~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~-----------~~~~ 121 (163)
T cd01476 61 ----NDGEELLEKVD----NLRFIGGTTATGAAIEVALQQLDPSEGRREGIPKVVVVLTDGRSHD-----------DPEK 121 (163)
T ss_pred ----CCHHHHHHHHH----hCccCCCCccHHHHHHHHHHHhccccCCCCCCCeEEEEECCCCCCC-----------chHH
Confidence 23344444433 233 467899999999999887521 12247899999998765 1344
Q ss_pred HHHHHHHhccCCcEEEEEecccC
Q 013923 257 TVNSIVAASHYPLSIILVGVGDG 279 (434)
Q Consensus 257 T~~aIv~AS~~PLSIIiVGVGd~ 279 (434)
..+++.+ ..-+.|+.||+|+.
T Consensus 122 ~~~~l~~--~~~v~v~~vg~g~~ 142 (163)
T cd01476 122 QARILRA--VPNIETFAVGTGDP 142 (163)
T ss_pred HHHHHhh--cCCCEEEEEECCCc
Confidence 4556655 46688999999986
No 37
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=8.9e-06 Score=77.01 Aligned_cols=41 Identities=41% Similarity=0.946 Sum_probs=36.2
Q ss_pred cCCCCccCccccCCcc-ceecCCCCCchhhhcCC----CCCCCcCc
Q 013923 384 ALVEPVCPICLTNPKD-MAFGCGHTTCKDCGTTI----SSCPMCRE 424 (434)
Q Consensus 384 ~~e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~l----~~CPlCR~ 424 (434)
..+...|+||++.+++ +.++|||+||..|+..+ ..||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 4677899999999999 88899999999999864 58999993
No 38
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=97.71 E-value=0.00089 Score=63.04 Aligned_cols=151 Identities=11% Similarity=0.175 Sum_probs=94.7
Q ss_pred HHHHHhhcccccCCC---CCcceEeeCCCCCCCCcceecCCCCCCcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHH
Q 013923 143 AISIIGRTLSPFDED---NLIPCFGFGDASTHDQYVFSFYPDNHYCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAID 219 (434)
Q Consensus 143 AI~~Ig~vl~~yD~d---~~ip~~GFGa~~~~~~~vf~~~~~~~~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~ 219 (434)
++..+-.++..|+-. -.+-+.=|++... ..++|+.+. -..-++++++-+++-+.....|-|+....|++|.+
T Consensus 22 ~~~f~~~lv~~l~i~~~~~rvgvv~fs~~~~---~~~~~~~~~--~~~~~~l~~~i~~l~~~~~~~g~T~~~~AL~~a~~ 96 (192)
T cd01473 22 VIPFTEKIINNLNISKDKVHVGILLFAEKNR---DVVPFSDEE--RYDKNELLKKINDLKNSYRSGGETYIVEALKYGLK 96 (192)
T ss_pred HHHHHHHHHHhCccCCCccEEEEEEecCCce---eEEecCccc--ccCHHHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 555666667776643 4677777876532 234554321 12345666665554444445788999999999988
Q ss_pred HHHHcc----CccEEEEEEeCCcccCCCCCCCCCCChhHHHHHHHHHHhccCCcEEEEEecccCCcccccccCCCC-Ccc
Q 013923 220 IVEASN----RQYHVLVIIADGQVTRNPDTPAGRLSPQEQATVNSIVAASHYPLSIILVGVGDGPWDSVQQFDDNI-PQR 294 (434)
Q Consensus 220 ~~~~~~----~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~AS~~PLSIIiVGVGd~~f~~m~~lD~~~-~~r 294 (434)
...+.. ..--|||+||||.-++. +.....++...+-+..+-|..||||..+-..++.+=+.- ...
T Consensus 97 ~~~~~~~~r~~~~kv~IllTDG~s~~~----------~~~~~~~~a~~lk~~gV~i~~vGiG~~~~~el~~ia~~~~~~~ 166 (192)
T cd01473 97 NYTKHGNRRKDAPKVTMLFTDGNDTSA----------SKKELQDISLLYKEENVKLLVVGVGAASENKLKLLAGCDINND 166 (192)
T ss_pred HhccCCCCcccCCeEEEEEecCCCCCc----------chhhHHHHHHHHHHCCCEEEEEEeccccHHHHHHhcCCCCCCC
Confidence 764321 13689999999988761 234456677777888999999999998766666655421 111
Q ss_pred cccceeeeeccccc
Q 013923 295 AFDNFQFVNFTKIM 308 (434)
Q Consensus 295 ~rDnvqFV~f~~~~ 308 (434)
...+|=..+|+++.
T Consensus 167 ~~~~~~~~~f~~l~ 180 (192)
T cd01473 167 NCPNVIKTEWNNLN 180 (192)
T ss_pred CCCeEEecchhhHH
Confidence 12234444566554
No 39
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=97.70 E-value=0.00054 Score=61.78 Aligned_cols=141 Identities=16% Similarity=0.258 Sum_probs=87.5
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCCcceEeeCCCCCCCCcceecCCCC
Q 013923 106 NLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFD---EDNLIPCFGFGDASTHDQYVFSFYPDN 182 (434)
Q Consensus 106 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD---~d~~ip~~GFGa~~~~~~~vf~~~~~~ 182 (434)
++++.||-+.|=. ...++.+...+..++..|+ .+-.+-++-|+.... .++++..
T Consensus 2 Dvv~vlD~SgSm~------------------~~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~~~~---~~~~~~~-- 58 (164)
T cd01472 2 DIVFLVDGSESIG------------------LSNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDDPR---TEFYLNT-- 58 (164)
T ss_pred CEEEEEeCCCCCC------------------HHHHHHHHHHHHHHHhhcccCCCCeEEEEEEEcCcee---EEEecCC--
Confidence 6788999877632 1234445555555555554 344788888987532 2334321
Q ss_pred CCcCCHHHHHHHHHHhcCCccc-cCCCChHHHHHHHHHHHHHc-----cCccEEEEEEeCCcccCCCCCCCCCCChhHHH
Q 013923 183 HYCHGFEEVLARYREILPHLKL-SGPTSFAPIIDAAIDIVEAS-----NRQYHVLVIIADGQVTRNPDTPAGRLSPQEQA 256 (434)
Q Consensus 183 ~~~~G~egvl~~Yr~~~~~v~l-~GPT~fapiI~~a~~~~~~~-----~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~ 256 (434)
....+.++++ +..++. .|.|+....++.|.+..... ...-.++++||||.-++ .
T Consensus 59 --~~~~~~~~~~----l~~l~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~iiliTDG~~~~--------------~ 118 (164)
T cd01472 59 --YRSKDDVLEA----VKNLRYIGGGTNTGKALKYVRENLFTEASGSREGVPKVLVVITDGKSQD--------------D 118 (164)
T ss_pred --CCCHHHHHHH----HHhCcCCCCCchHHHHHHHHHHHhCCcccCCCCCCCEEEEEEcCCCCCc--------------h
Confidence 1234444443 333443 78899999999999876531 23356778889996554 1
Q ss_pred HHHHHHHhccCCcEEEEEecccCCcccccccCC
Q 013923 257 TVNSIVAASHYPLSIILVGVGDGPWDSVQQFDD 289 (434)
Q Consensus 257 T~~aIv~AS~~PLSIIiVGVGd~~f~~m~~lD~ 289 (434)
...+..+.....+.|..||+|+.+.+.|+.+=+
T Consensus 119 ~~~~~~~l~~~gv~i~~ig~g~~~~~~L~~ia~ 151 (164)
T cd01472 119 VEEPAVELKQAGIEVFAVGVKNADEEELKQIAS 151 (164)
T ss_pred HHHHHHHHHHCCCEEEEEECCcCCHHHHHHHHC
Confidence 222333333477899999999987777777654
No 40
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.70 E-value=0.00053 Score=62.36 Aligned_cols=140 Identities=19% Similarity=0.243 Sum_probs=83.4
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCCcceEeeCCCCCCCCcceecCCCCCC
Q 013923 105 SNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDEDNLIPCFGFGDASTHDQYVFSFYPDNHY 184 (434)
Q Consensus 105 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~d~~ip~~GFGa~~~~~~~vf~~~~~~~~ 184 (434)
.++++.||.+.|=... .+ + ..+..+.|...+...+...+ +..+-++.|++.... ++.+.
T Consensus 3 ~~vv~vlD~S~SM~~~---~~--------~-~~~r~~~a~~~~~~~~~~~~-~~~v~lv~f~~~~~~---~~~~~----- 61 (180)
T cd01467 3 RDIMIALDVSGSMLAQ---DF--------V-KPSRLEAAKEVLSDFIDRRE-NDRIGLVVFAGAAFT---QAPLT----- 61 (180)
T ss_pred ceEEEEEECCcccccc---cC--------C-CCCHHHHHHHHHHHHHHhCC-CCeEEEEEEcCCeee---ccCCC-----
Confidence 6899999999985421 01 1 23455566666666666554 457899999875321 22221
Q ss_pred cCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHccCccEEEEEEeCCcccCCCCCCCCCCChhHHHHHHHHHHh
Q 013923 185 CHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEASNRQYHVLVIIADGQVTRNPDTPAGRLSPQEQATVNSIVAA 264 (434)
Q Consensus 185 ~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~A 264 (434)
.+.+.+.+.. +.+......|.|+...-|+.+.+...+....-.+++|||||.-+. |...+ .+.++ .+
T Consensus 62 -~~~~~~~~~l-~~l~~~~~~g~T~l~~al~~a~~~l~~~~~~~~~iiliTDG~~~~------g~~~~--~~~~~---~~ 128 (180)
T cd01467 62 -LDRESLKELL-EDIKIGLAGQGTAIGDAIGLAIKRLKNSEAKERVIVLLTDGENNA------GEIDP--ATAAE---LA 128 (180)
T ss_pred -ccHHHHHHHH-HHhhhcccCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCC------CCCCH--HHHHH---HH
Confidence 2222222221 122233457889998889888888765444457889999997653 22222 22222 33
Q ss_pred ccCCcEEEEEeccc
Q 013923 265 SHYPLSIILVGVGD 278 (434)
Q Consensus 265 S~~PLSIIiVGVGd 278 (434)
....+-|..||||+
T Consensus 129 ~~~gi~i~~i~ig~ 142 (180)
T cd01467 129 KNKGVRIYTIGVGK 142 (180)
T ss_pred HHCCCEEEEEEecC
Confidence 45678888888887
No 41
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=1.2e-05 Score=78.89 Aligned_cols=44 Identities=32% Similarity=0.758 Sum_probs=37.5
Q ss_pred CCCCccCccccCCcc-ceecCCCCCchhhhcC-C-----CCCCCcCccccc
Q 013923 385 LVEPVCPICLTNPKD-MAFGCGHTTCKDCGTT-I-----SSCPMCREPITT 428 (434)
Q Consensus 385 ~e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~-l-----~~CPlCR~~i~~ 428 (434)
..+..|+||++.+.. ..++|||.||..|+-. | -.||+||+....
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence 557899999999988 8889999999999865 3 469999998653
No 42
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=97.69 E-value=0.00037 Score=76.29 Aligned_cols=146 Identities=23% Similarity=0.247 Sum_probs=95.8
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCCcceEeeCCCCCCCCcceecCCCCCC
Q 013923 105 SNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDEDNLIPCFGFGDASTHDQYVFSFYPDNHY 184 (434)
Q Consensus 105 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~d~~ip~~GFGa~~~~~~~vf~~~~~~~~ 184 (434)
.++++.||.+.|=. | +..++|-.++..+|....++..|-++.|+...... + +. .
T Consensus 272 ~~vvfvlD~SgSM~--g----------------~~i~~ak~al~~~l~~L~~~d~~~ii~F~~~~~~~---~---~~--~ 325 (596)
T TIGR03788 272 RELVFVIDTSGSMA--G----------------ESIEQAKSALLLALDQLRPGDRFNIIQFDSDVTLL---F---PV--P 325 (596)
T ss_pred ceEEEEEECCCCCC--C----------------ccHHHHHHHHHHHHHhCCCCCEEEEEEECCcceEe---c---cc--c
Confidence 57889999887742 1 23566777777778888878899999999864321 1 11 0
Q ss_pred cCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHc-cCccEEEEEEeCCcccCCCCCCCCCCChhHHHHHHHHHH
Q 013923 185 CHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEAS-NRQYHVLVIIADGQVTRNPDTPAGRLSPQEQATVNSIVA 263 (434)
Q Consensus 185 ~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~-~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~ 263 (434)
...-++-+++..+.+..++..|-|++.+.|+.|.+..... .+.--.+++||||.+.+ +.+.++++..
T Consensus 326 ~~~~~~~~~~a~~~i~~l~a~GgT~l~~aL~~a~~~~~~~~~~~~~~iillTDG~~~~------------~~~~~~~~~~ 393 (596)
T TIGR03788 326 VPATAHNLARARQFVAGLQADGGTEMAGALSAALRDDGPESSGALRQVVFLTDGAVGN------------EDALFQLIRT 393 (596)
T ss_pred ccCCHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHhhcccCCCceeEEEEEeCCCCCC------------HHHHHHHHHH
Confidence 1111223334445566777889999999999998764222 12234567789999876 5677777765
Q ss_pred hccCCcEEEEEecccC-CcccccccCC
Q 013923 264 ASHYPLSIILVGVGDG-PWDSVQQFDD 289 (434)
Q Consensus 264 AS~~PLSIIiVGVGd~-~f~~m~~lD~ 289 (434)
+. -..-|..||||+. +...|+.|-.
T Consensus 394 ~~-~~~ri~tvGiG~~~n~~lL~~lA~ 419 (596)
T TIGR03788 394 KL-GDSRLFTVGIGSAPNSYFMRKAAQ 419 (596)
T ss_pred hc-CCceEEEEEeCCCcCHHHHHHHHH
Confidence 53 3456778999986 5556665543
No 43
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.66 E-value=3e-05 Score=54.23 Aligned_cols=38 Identities=42% Similarity=1.181 Sum_probs=30.4
Q ss_pred ccCccccCCcc-cee-cCCCCCchhhhcC-----CCCCCCcCccc
Q 013923 389 VCPICLTNPKD-MAF-GCGHTTCKDCGTT-----ISSCPMCREPI 426 (434)
Q Consensus 389 ~CpICl~~~kd-v~l-~CGH~fC~~Ci~~-----l~~CPlCR~~i 426 (434)
.|+||++.+.+ +.+ +|||.||..|+.. ...||+||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 49999998855 444 6999999999873 35799998753
No 44
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.65 E-value=9.6e-06 Score=57.40 Aligned_cols=33 Identities=45% Similarity=1.215 Sum_probs=28.1
Q ss_pred cCccccCCcc-c-eecCCCCCchhhhcC------CCCCCCc
Q 013923 390 CPICLTNPKD-M-AFGCGHTTCKDCGTT------ISSCPMC 422 (434)
Q Consensus 390 CpICl~~~kd-v-~l~CGH~fC~~Ci~~------l~~CPlC 422 (434)
|+||++.+.+ + .++|||.||..|+.+ ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 8999999988 5 679999999999864 3568887
No 45
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=1.8e-05 Score=87.06 Aligned_cols=44 Identities=32% Similarity=0.699 Sum_probs=38.5
Q ss_pred CCCCccCccccCCcc-ceecCCCCCchhhhcC-----CCCCCCcCccccc
Q 013923 385 LVEPVCPICLTNPKD-MAFGCGHTTCKDCGTT-----ISSCPMCREPITT 428 (434)
Q Consensus 385 ~e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~-----l~~CPlCR~~i~~ 428 (434)
..-+.||+|-+.+++ +...|||.||..|++. ...||.|...|..
T Consensus 641 K~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred HhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 456899999999999 6669999999999884 4899999999865
No 46
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=97.59 E-value=0.00051 Score=61.29 Aligned_cols=142 Identities=17% Similarity=0.226 Sum_probs=87.9
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCCcceEeeCCCCCCCCcceecCCCCCCc
Q 013923 106 NLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDEDNLIPCFGFGDASTHDQYVFSFYPDNHYC 185 (434)
Q Consensus 106 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~d~~ip~~GFGa~~~~~~~vf~~~~~~~~~ 185 (434)
++++-||.+.|.... . ..-..||+.+.+.|. +...|-++.||......... + ....-
T Consensus 2 ~vvilvD~S~Sm~g~---------------~-~~~k~al~~~l~~L~---~~d~fnii~f~~~~~~~~~~--~--~~~~~ 58 (155)
T PF13768_consen 2 DVVILVDTSGSMSGE---------------K-ELVKDALRAILRSLP---PGDRFNIIAFGSSVRPLFPG--L--VPATE 58 (155)
T ss_pred eEEEEEeCCCCCCCc---------------H-HHHHHHHHHHHHhCC---CCCEEEEEEeCCEeeEcchh--H--HHHhH
Confidence 578999999887421 1 334455555555544 45589999999853211110 0 00001
Q ss_pred CCHHHHHHHHHHhcCCccc-cCCCChHHHHHHHHHHHHHccCccEEEEEEeCCcccCCCCCCCCCCChhHHHHHHHHHHh
Q 013923 186 HGFEEVLARYREILPHLKL-SGPTSFAPIIDAAIDIVEASNRQYHVLVIIADGQVTRNPDTPAGRLSPQEQATVNSIVAA 264 (434)
Q Consensus 186 ~G~egvl~~Yr~~~~~v~l-~GPT~fapiI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~A 264 (434)
.+++.+ .+.+..+.. .|.|+..+.++.|++.... .+.-..+++||||..++ ..+++.+.+..+
T Consensus 59 ~~~~~a----~~~I~~~~~~~G~t~l~~aL~~a~~~~~~-~~~~~~IilltDG~~~~-----------~~~~i~~~v~~~ 122 (155)
T PF13768_consen 59 ENRQEA----LQWIKSLEANSGGTDLLAALRAALALLQR-PGCVRAIILLTDGQPVS-----------GEEEILDLVRRA 122 (155)
T ss_pred HHHHHH----HHHHHHhcccCCCccHHHHHHHHHHhccc-CCCccEEEEEEeccCCC-----------CHHHHHHHHHhc
Confidence 233333 334445666 8999999999999876422 23455667889999743 256777777664
Q ss_pred ccCCcEEEEEeccc-CCccccccc
Q 013923 265 SHYPLSIILVGVGD-GPWDSVQQF 287 (434)
Q Consensus 265 S~~PLSIIiVGVGd-~~f~~m~~l 287 (434)
. -.+-|..+|+|. .+...|++|
T Consensus 123 ~-~~~~i~~~~~g~~~~~~~L~~L 145 (155)
T PF13768_consen 123 R-GHIRIFTFGIGSDADADFLREL 145 (155)
T ss_pred C-CCceEEEEEECChhHHHHHHHH
Confidence 4 558888899997 455666655
No 47
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=97.55 E-value=0.00082 Score=62.76 Aligned_cols=153 Identities=18% Similarity=0.274 Sum_probs=89.1
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcc---cccCCCCCcceEeeCCCCCCCCcceecCCC
Q 013923 105 SNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTL---SPFDEDNLIPCFGFGDASTHDQYVFSFYPD 181 (434)
Q Consensus 105 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl---~~yD~d~~ip~~GFGa~~~~~~~vf~~~~~ 181 (434)
+++.+.||-+.|=+ ...++++...+..++ ..+..+-.+-++.|+.... .+|.+...
T Consensus 1 ~di~~vlD~SgSM~------------------~~~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~~~---~~~~~~~~ 59 (198)
T cd01470 1 LNIYIALDASDSIG------------------EEDFDEAKNAIKTLIEKISSYEVSPRYEIISYASDPK---EIVSIRDF 59 (198)
T ss_pred CcEEEEEECCCCcc------------------HHHHHHHHHHHHHHHHHccccCCCceEEEEEecCCce---EEEecccC
Confidence 47889999987732 123444544444444 4444456789999987532 23444221
Q ss_pred CCCcCCHHHHHHHHHHhcCCcc-ccCCCChHHHHHHHHHHHHHc--------cCccEEEEEEeCCcccCCCCCCCCCCCh
Q 013923 182 NHYCHGFEEVLARYREILPHLK-LSGPTSFAPIIDAAIDIVEAS--------NRQYHVLVIIADGQVTRNPDTPAGRLSP 252 (434)
Q Consensus 182 ~~~~~G~egvl~~Yr~~~~~v~-l~GPT~fapiI~~a~~~~~~~--------~~~Y~VLlIiTDG~i~d~~~~~~~~~~~ 252 (434)
.-...+.++++-..+-+... ..|-|++...|+++.+..... ...-.++++||||+-++ | .+|
T Consensus 60 --~~~~~~~~~~~l~~~~~~~~~~~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~------g-~~~ 130 (198)
T cd01470 60 --NSNDADDVIKRLEDFNYDDHGDKTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNM------G-GSP 130 (198)
T ss_pred --CCCCHHHHHHHHHhCCcccccCccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCC------C-CCh
Confidence 11223445444333322222 246799999999887754211 01247889999998764 1 122
Q ss_pred hHHHHHHHHHHh----------ccCCcEEEEEecccC-CcccccccCC
Q 013923 253 QEQATVNSIVAA----------SHYPLSIILVGVGDG-PWDSVQQFDD 289 (434)
Q Consensus 253 ~~~~T~~aIv~A----------S~~PLSIIiVGVGd~-~f~~m~~lD~ 289 (434)
....+.|.++ ....+.|..||||+. +.+.|+++=.
T Consensus 131 --~~~~~~~~~~~~~~~~~~~~~~~~v~i~~iGvG~~~~~~~L~~iA~ 176 (198)
T cd01470 131 --LPTVDKIKNLVYKNNKSDNPREDYLDVYVFGVGDDVNKEELNDLAS 176 (198)
T ss_pred --hHHHHHHHHHHhcccccccchhcceeEEEEecCcccCHHHHHHHhc
Confidence 3344444443 334689999999974 6777777754
No 48
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.51 E-value=1.7e-05 Score=80.20 Aligned_cols=45 Identities=29% Similarity=0.492 Sum_probs=39.2
Q ss_pred cCCCCccCccccCCcc-ceecCCCCCchhhhcC----CCCCCCcCccccc
Q 013923 384 ALVEPVCPICLTNPKD-MAFGCGHTTCKDCGTT----ISSCPMCREPITT 428 (434)
Q Consensus 384 ~~e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~----l~~CPlCR~~i~~ 428 (434)
+.+-+.|-||.+.++. |.++|+|+||.-|+.. ...||.|+.+++.
T Consensus 20 lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred hHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccch
Confidence 4566899999999998 8889999999999985 3689999998765
No 49
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=2.7e-05 Score=79.34 Aligned_cols=50 Identities=32% Similarity=0.836 Sum_probs=42.0
Q ss_pred CCCCccCccccCCcc-ceecCCCCCc-hhhhcCCCCCCCcCcccccccccCC
Q 013923 385 LVEPVCPICLTNPKD-MAFGCGHTTC-KDCGTTISSCPMCREPITTRLRLYT 434 (434)
Q Consensus 385 ~e~~~CpICl~~~kd-v~l~CGH~fC-~~Ci~~l~~CPlCR~~i~~~i~ly~ 434 (434)
.....|.||++.+++ +.++|||..| -.|.+.+..||+||+.|...+++|.
T Consensus 303 ~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~~~~k~y~ 354 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQCPVCRQRIRLVRKRYR 354 (355)
T ss_pred CCCCceEEecCCccceeeecCCcEEEchHHHhhCCCCchhHHHHHHHHHHhc
Confidence 345689999999999 5569999954 4677788899999999999988874
No 50
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.49 E-value=2.7e-05 Score=77.39 Aligned_cols=44 Identities=32% Similarity=0.536 Sum_probs=37.8
Q ss_pred CCCCccCccccCCcc-ceecCCCCCchhhhcCC----CCCCCcCccccc
Q 013923 385 LVEPVCPICLTNPKD-MAFGCGHTTCKDCGTTI----SSCPMCREPITT 428 (434)
Q Consensus 385 ~e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~l----~~CPlCR~~i~~ 428 (434)
..-+.|-||-+.++. +.++|||.||.-|+.+. ..||+||.+...
T Consensus 23 Ds~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 23 DSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred hhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence 345799999999998 88899999999999853 789999998653
No 51
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.44 E-value=7.9e-05 Score=50.18 Aligned_cols=33 Identities=48% Similarity=1.279 Sum_probs=27.6
Q ss_pred cCccccCCcc-ceecCCCCCchhhhcCC-----CCCCCc
Q 013923 390 CPICLTNPKD-MAFGCGHTTCKDCGTTI-----SSCPMC 422 (434)
Q Consensus 390 CpICl~~~kd-v~l~CGH~fC~~Ci~~l-----~~CPlC 422 (434)
|+||++...+ +.++|||.||..|+..+ ..||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 8899998777 67799999999998743 568887
No 52
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.42 E-value=6e-05 Score=59.40 Aligned_cols=43 Identities=33% Similarity=0.713 Sum_probs=24.9
Q ss_pred CCCCccCccccCCcc-ce-ecCCCCCchhhhcCC--CCCCCcCcccc
Q 013923 385 LVEPVCPICLTNPKD-MA-FGCGHTTCKDCGTTI--SSCPMCREPIT 427 (434)
Q Consensus 385 ~e~~~CpICl~~~kd-v~-l~CGH~fC~~Ci~~l--~~CPlCR~~i~ 427 (434)
++-+.|++|.+.+++ +. ..|.|.||..|+.+. ..||+|+.+..
T Consensus 5 e~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~~CPvC~~Paw 51 (65)
T PF14835_consen 5 EELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGSECPVCHTPAW 51 (65)
T ss_dssp HHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTTB-SSS--B-S
T ss_pred HHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCCCCCCcCChHH
Confidence 345789999999999 54 599999999999865 67999998864
No 53
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=9e-06 Score=82.55 Aligned_cols=48 Identities=33% Similarity=0.730 Sum_probs=40.0
Q ss_pred ccCCCCccCccccCCcc-cee-cCCCCCchhhhcC-----CCCCCCcCccccccc
Q 013923 383 TALVEPVCPICLTNPKD-MAF-GCGHTTCKDCGTT-----ISSCPMCREPITTRL 430 (434)
Q Consensus 383 ~~~e~~~CpICl~~~kd-v~l-~CGH~fC~~Ci~~-----l~~CPlCR~~i~~~i 430 (434)
....+..|+|||.+++. |++ .|+|.||.+|+-. -..||.||+.+..+.
T Consensus 39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skr 93 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKR 93 (381)
T ss_pred HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccc
Confidence 35667899999999998 655 9999999999863 378999999987654
No 54
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.40 E-value=0.0023 Score=59.43 Aligned_cols=147 Identities=15% Similarity=0.263 Sum_probs=91.1
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---------CCCCcceEeeCCCCCCCCcc
Q 013923 105 SNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFD---------EDNLIPCFGFGDASTHDQYV 175 (434)
Q Consensus 105 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD---------~d~~ip~~GFGa~~~~~~~v 175 (434)
+++++.+|-+.|=+ ...++.+...+-.++..+. .+-.+-++-|+.... .+
T Consensus 3 ~dvv~vlD~S~Sm~------------------~~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~~~---~~ 61 (186)
T cd01480 3 VDITFVLDSSESVG------------------LQNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQE---VE 61 (186)
T ss_pred eeEEEEEeCCCccc------------------hhhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCCce---ee
Confidence 68899999987742 1234445444444444442 235688888987532 23
Q ss_pred eecCCCCCCcCCHHHHHHHHHHhcCCcc-ccCCCChHHHHHHHHHHHHH--ccCccEEEEEEeCCcccCCCCCCCCCCCh
Q 013923 176 FSFYPDNHYCHGFEEVLARYREILPHLK-LSGPTSFAPIIDAAIDIVEA--SNRQYHVLVIIADGQVTRNPDTPAGRLSP 252 (434)
Q Consensus 176 f~~~~~~~~~~G~egvl~~Yr~~~~~v~-l~GPT~fapiI~~a~~~~~~--~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~ 252 (434)
+.+..+ -...+.+++ .+..++ ..|.|+....|+.|.+.... ....-.++++||||..++..
T Consensus 62 ~~l~~~---~~~~~~l~~----~i~~l~~~gg~T~~~~AL~~a~~~l~~~~~~~~~~~iillTDG~~~~~~--------- 125 (186)
T cd01480 62 AGFLRD---IRNYTSLKE----AVDNLEYIGGGTFTDCALKYATEQLLEGSHQKENKFLLVITDGHSDGSP--------- 125 (186)
T ss_pred Eecccc---cCCHHHHHH----HHHhCccCCCCccHHHHHHHHHHHHhccCCCCCceEEEEEeCCCcCCCc---------
Confidence 444321 123344433 444454 47899999999999988764 12335788889999864311
Q ss_pred hHHHHHHHHHHhccCCcEEEEEecccCCcccccccCC
Q 013923 253 QEQATVNSIVAASHYPLSIILVGVGDGPWDSVQQFDD 289 (434)
Q Consensus 253 ~~~~T~~aIv~AS~~PLSIIiVGVGd~~f~~m~~lD~ 289 (434)
.....+++.++.+..+.|..||||..+-..|+++=+
T Consensus 126 -~~~~~~~~~~~~~~gi~i~~vgig~~~~~~L~~IA~ 161 (186)
T cd01480 126 -DGGIEKAVNEADHLGIKIFFVAVGSQNEEPLSRIAC 161 (186)
T ss_pred -chhHHHHHHHHHHCCCEEEEEecCccchHHHHHHHc
Confidence 123345555666889999999999865555555433
No 55
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=97.37 E-value=0.0028 Score=68.96 Aligned_cols=142 Identities=12% Similarity=0.168 Sum_probs=95.3
Q ss_pred eeceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCC-CCcc--eEeeCCCCCCCCcceecCC
Q 013923 104 SSNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDED-NLIP--CFGFGDASTHDQYVFSFYP 180 (434)
Q Consensus 104 ~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~d-~~ip--~~GFGa~~~~~~~vf~~~~ 180 (434)
.+++++.||-+.|=+ ..|-.++|+..+..++..++.. ..+- +..|+... ..+|.+..
T Consensus 42 ~lDIvFLLD~SgSMg-----------------~~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~~---r~vfpL~s 101 (576)
T PTZ00441 42 EVDLYLLVDGSGSIG-----------------YHNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNNT---TELIRLGS 101 (576)
T ss_pred CceEEEEEeCCCccC-----------------CccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCc---eEEEecCC
Confidence 478999999887743 1244577888888888888542 2233 35676642 23445432
Q ss_pred CCCCcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHcc---CccEEEEEEeCCcccCCCCCCCCCCChhHHHH
Q 013923 181 DNHYCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEASN---RQYHVLVIIADGQVTRNPDTPAGRLSPQEQAT 257 (434)
Q Consensus 181 ~~~~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~~---~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T 257 (434)
.. -...+.++.+-+++...+...|-|++...|+.|.+...+.+ ..--|+||||||.-++ ..++
T Consensus 102 ~~--s~Dk~~aL~~I~sL~~~~~pgGgTnig~AL~~Aae~L~sr~~R~nvpKVVILLTDG~sns------------~~dv 167 (576)
T PTZ00441 102 GA--SKDKEQALIIVKSLRKTYLPYGKTNMTDALLEVRKHLNDRVNRENAIQLVILMTDGIPNS------------KYRA 167 (576)
T ss_pred Cc--cccHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhhcccccCCceEEEEEecCCCCC------------cccH
Confidence 21 12345677776767677777899999999999888765431 2246889999998654 2345
Q ss_pred HHHHHHhccCCcEEEEEecccC
Q 013923 258 VNSIVAASHYPLSIILVGVGDG 279 (434)
Q Consensus 258 ~~aIv~AS~~PLSIIiVGVGd~ 279 (434)
++++.......+-|+.||||.+
T Consensus 168 leaAq~LR~~GVeI~vIGVG~g 189 (576)
T PTZ00441 168 LEESRKLKDRNVKLAVIGIGQG 189 (576)
T ss_pred HHHHHHHHHCCCEEEEEEeCCC
Confidence 5566666677899999999975
No 56
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=97.37 E-value=0.00064 Score=60.77 Aligned_cols=145 Identities=14% Similarity=0.242 Sum_probs=86.0
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhccc---ccCCCCCcceEeeCCCCCCCCcceecCCCC
Q 013923 106 NLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLS---PFDEDNLIPCFGFGDASTHDQYVFSFYPDN 182 (434)
Q Consensus 106 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~---~yD~d~~ip~~GFGa~~~~~~~vf~~~~~~ 182 (434)
++++.||-+.|-+. ..++++...|-.++. ..+..-.+-+.-||.... .+|.|...
T Consensus 1 DivflvD~S~sm~~------------------~~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~~~---~~~~~~~~- 58 (178)
T PF00092_consen 1 DIVFLVDTSGSMSG------------------DNFEKAKQFVKSIISRLSISNNGTRVGIVTFSDSAR---VLFSLTDY- 58 (178)
T ss_dssp EEEEEEE-STTSCH------------------HHHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSSEE---EEEETTSH-
T ss_pred CEEEEEeCCCCCch------------------HHHHHHHHHHHHHHHhhhccccccccceeeeecccc---cccccccc-
Confidence 47889998887642 234455555554444 566667788888988643 34555321
Q ss_pred CCcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHc-----cCccEEEEEEeCCcccCCCCCCCCCCChhHHHH
Q 013923 183 HYCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEAS-----NRQYHVLVIIADGQVTRNPDTPAGRLSPQEQAT 257 (434)
Q Consensus 183 ~~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~-----~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T 257 (434)
...+.+++.- ........|.|+++..|+.|.+..... .....++++||||..++.. .....
T Consensus 59 ---~~~~~~~~~i--~~~~~~~~g~t~~~~aL~~a~~~l~~~~~~~r~~~~~~iiliTDG~~~~~~---------~~~~~ 124 (178)
T PF00092_consen 59 ---QSKNDLLNAI--NDSIPSSGGGTNLGAALKFAREQLFSSNNGGRPNSPKVIILITDGNSNDSD---------SPSEE 124 (178)
T ss_dssp ---SSHHHHHHHH--HTTGGCCBSSB-HHHHHHHHHHHTTSGGGTTGTTSEEEEEEEESSSSSSHS---------GHHHH
T ss_pred ---cccccccccc--cccccccchhhhHHHHHhhhhhcccccccccccccccceEEEEeecccCCc---------chHHH
Confidence 3344554432 234456778999999999999986533 3568999999999998721 12223
Q ss_pred HHHHHHhccCCcEEEEEecccCCcccccccC
Q 013923 258 VNSIVAASHYPLSIILVGVGDGPWDSVQQFD 288 (434)
Q Consensus 258 ~~aIv~AS~~PLSIIiVGVGd~~f~~m~~lD 288 (434)
...+.+. .-+.++.||+++.+-..|+.|-
T Consensus 125 ~~~~~~~--~~i~~~~ig~~~~~~~~l~~la 153 (178)
T PF00092_consen 125 AANLKKS--NGIKVIAIGIDNADNEELRELA 153 (178)
T ss_dssp HHHHHHH--CTEEEEEEEESCCHHHHHHHHS
T ss_pred HHHHHHh--cCcEEEEEecCcCCHHHHHHHh
Confidence 3333322 4455555555334555555554
No 57
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=97.31 E-value=0.0023 Score=61.18 Aligned_cols=142 Identities=14% Similarity=0.213 Sum_probs=89.5
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCC---CCcceEeeCCCCCCCCcceecCCC
Q 013923 105 SNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDED---NLIPCFGFGDASTHDQYVFSFYPD 181 (434)
Q Consensus 105 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~d---~~ip~~GFGa~~~~~~~vf~~~~~ 181 (434)
+++.+.||-+.|=+ ...++++...+..++..++.. -.+-++-|+.... .+|+|+..
T Consensus 3 ~DlvfllD~S~Sm~------------------~~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~~~---~~~~l~~~ 61 (224)
T cd01475 3 TDLVFLIDSSRSVR------------------PENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVK---QEFPLGRF 61 (224)
T ss_pred ccEEEEEeCCCCCC------------------HHHHHHHHHHHHHHHHhcccCCCccEEEEEEecCcee---EEeccccc
Confidence 57888999876531 245788888888888888643 4788899988643 34555431
Q ss_pred CCCcCCHHHHHHHHHHhcCCcc-ccCCCChHHHHHHHHHHHH-H-cc---Cc---cEEEEEEeCCcccCCCCCCCCCCCh
Q 013923 182 NHYCHGFEEVLARYREILPHLK-LSGPTSFAPIIDAAIDIVE-A-SN---RQ---YHVLVIIADGQVTRNPDTPAGRLSP 252 (434)
Q Consensus 182 ~~~~~G~egvl~~Yr~~~~~v~-l~GPT~fapiI~~a~~~~~-~-~~---~~---Y~VLlIiTDG~i~d~~~~~~~~~~~ 252 (434)
...+++.++-. .++ +.|.|.-.-.|+.|.+.+- + .+ .. -.|+|+||||.-.+
T Consensus 62 ----~~~~~l~~~i~----~i~~~~~~t~tg~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s~~----------- 122 (224)
T cd01475 62 ----KSKADLKRAVR----RMEYLETGTMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQD----------- 122 (224)
T ss_pred ----CCHHHHHHHHH----hCcCCCCCChHHHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCCcc-----------
Confidence 23345555433 232 3456777777777776431 1 11 11 47889999998765
Q ss_pred hHHHHHHHHHHhccCCcEEEEEecccCCcccccccCC
Q 013923 253 QEQATVNSIVAASHYPLSIILVGVGDGPWDSVQQFDD 289 (434)
Q Consensus 253 ~~~~T~~aIv~AS~~PLSIIiVGVGd~~f~~m~~lD~ 289 (434)
+.++..+. +-..-+.|..||||+.+...|+++=.
T Consensus 123 ~~~~~a~~---lk~~gv~i~~VgvG~~~~~~L~~ias 156 (224)
T cd01475 123 DVSEVAAK---ARALGIEMFAVGVGRADEEELREIAS 156 (224)
T ss_pred cHHHHHHH---HHHCCcEEEEEeCCcCCHHHHHHHhC
Confidence 23333333 34567899999999977666655543
No 58
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.30 E-value=4.2e-05 Score=55.75 Aligned_cols=26 Identities=46% Similarity=1.086 Sum_probs=16.2
Q ss_pred cCccccCCcc-----ceecCCCCCchhhhcCC
Q 013923 390 CPICLTNPKD-----MAFGCGHTTCKDCGTTI 416 (434)
Q Consensus 390 CpICl~~~kd-----v~l~CGH~fC~~Ci~~l 416 (434)
||||.+ +.+ +.++|||+||.+|+.++
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKL 31 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHH
Confidence 899999 543 77899999999998743
No 59
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.29 E-value=0.0075 Score=53.55 Aligned_cols=133 Identities=17% Similarity=0.152 Sum_probs=76.9
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCCcceEeeCCCCCCCCcceecCCCCCCc
Q 013923 106 NLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDEDNLIPCFGFGDASTHDQYVFSFYPDNHYC 185 (434)
Q Consensus 106 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~d~~ip~~GFGa~~~~~~~vf~~~~~~~~~ 185 (434)
.+.+.||.+.|=. +. ..-.-..++..++..+.. .+..+-++.|+... ....+. .-
T Consensus 2 ~v~illD~SgSM~--~~-------------k~~~a~~~~~~l~~~~~~--~~~~v~li~F~~~~----~~~~~~----~~ 56 (152)
T cd01462 2 PVILLVDQSGSMY--GA-------------PEEVAKAVALALLRIALA--ENRDTYLILFDSEF----QTKIVD----KT 56 (152)
T ss_pred CEEEEEECCCCCC--CC-------------HHHHHHHHHHHHHHHHHH--cCCcEEEEEeCCCc----eEEecC----Cc
Confidence 4788999998753 11 011223444445554444 23468899998861 111111 11
Q ss_pred CCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHccCccEEEEEEeCCc-ccCCCCCCCCCCChhHHHHHHHHHHh
Q 013923 186 HGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEASNRQYHVLVIIADGQ-VTRNPDTPAGRLSPQEQATVNSIVAA 264 (434)
Q Consensus 186 ~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~~~~Y~VLlIiTDG~-i~d~~~~~~~~~~~~~~~T~~aIv~A 264 (434)
..+..+++. +..+...|.|++.+.++.+.+..++....=.+++|||||. -.+ ..+..++...+
T Consensus 57 ~~~~~~~~~----l~~~~~~ggT~l~~al~~a~~~l~~~~~~~~~ivliTDG~~~~~------------~~~~~~~~~~~ 120 (152)
T cd01462 57 DDLEEPVEF----LSGVQLGGGTDINKALRYALELIERRDPRKADIVLITDGYEGGV------------SDELLREVELK 120 (152)
T ss_pred ccHHHHHHH----HhcCCCCCCcCHHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC------------CHHHHHHHHHH
Confidence 345555443 3455678999999999999998776433335779999995 322 12333323333
Q ss_pred ccCCcEEEEEecccC
Q 013923 265 SHYPLSIILVGVGDG 279 (434)
Q Consensus 265 S~~PLSIIiVGVGd~ 279 (434)
....+=|-.||||+.
T Consensus 121 ~~~~~~v~~~~~g~~ 135 (152)
T cd01462 121 RSRVARFVALALGDH 135 (152)
T ss_pred HhcCcEEEEEEecCC
Confidence 344566677777763
No 60
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=97.28 E-value=0.002 Score=59.53 Aligned_cols=147 Identities=14% Similarity=0.188 Sum_probs=87.2
Q ss_pred eeceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC-CCCCcceEeeCCCCCCCCcceecCCCC
Q 013923 104 SSNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFD-EDNLIPCFGFGDASTHDQYVFSFYPDN 182 (434)
Q Consensus 104 ~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD-~d~~ip~~GFGa~~~~~~~vf~~~~~~ 182 (434)
.+++.+.||-+.|=+. . +.+++..+-.++..|+ .+-.+-++-|+... ..+|+|....
T Consensus 4 ~~Dvv~llD~SgSm~~--~-----------------~~~~~~~~~~l~~~~~~~~~rvglv~Fs~~~---~~~~~l~~~~ 61 (185)
T cd01474 4 HFDLYFVLDKSGSVAA--N-----------------WIEIYDFVEQLVDRFNSPGLRFSFITFSTRA---TKILPLTDDS 61 (185)
T ss_pred ceeEEEEEeCcCchhh--h-----------------HHHHHHHHHHHHHHcCCCCcEEEEEEecCCc---eEEEeccccH
Confidence 3689999999987421 0 1112222333333332 34678899998753 2355554321
Q ss_pred CCcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHH--ccCcc--EEEEEEeCCcccCCCCCCCCCCChhHHHHH
Q 013923 183 HYCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEA--SNRQY--HVLVIIADGQVTRNPDTPAGRLSPQEQATV 258 (434)
Q Consensus 183 ~~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~--~~~~Y--~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~ 258 (434)
+.+.++.. .++.+...|-|+...-|+.|.+...+ .++.. .++++||||..++.. ...+.
T Consensus 62 ------~~~~~~l~-~l~~~~~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~villTDG~~~~~~----------~~~~~ 124 (185)
T cd01474 62 ------SAIIKGLE-VLKKVTPSGQTYIHEGLENANEQIFNRNGGGRETVSVIIALTDGQLLLNG----------HKYPE 124 (185)
T ss_pred ------HHHHHHHH-HHhccCCCCCCcHHHHHHHHHHHHHhhccCCCCCCeEEEEEcCCCcCCCC----------CcchH
Confidence 12222221 24455567899999999999886632 22222 778899999885310 11233
Q ss_pred HHHHHhccCCcEEEEEecccCCcccccccCC
Q 013923 259 NSIVAASHYPLSIILVGVGDGPWDSVQQFDD 289 (434)
Q Consensus 259 ~aIv~AS~~PLSIIiVGVGd~~f~~m~~lD~ 289 (434)
++...+-+..+-|..||||+.+...|+.+=+
T Consensus 125 ~~a~~l~~~gv~i~~vgv~~~~~~~L~~iA~ 155 (185)
T cd01474 125 HEAKLSRKLGAIVYCVGVTDFLKSQLINIAD 155 (185)
T ss_pred HHHHHHHHcCCEEEEEeechhhHHHHHHHhC
Confidence 3334444567889999998888777777755
No 61
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.26 E-value=7.1e-05 Score=60.10 Aligned_cols=44 Identities=25% Similarity=0.401 Sum_probs=34.1
Q ss_pred CCCccCccccCCcc-ceecCCCCCchhhhcCC-----CCCCCcCcccccc
Q 013923 386 VEPVCPICLTNPKD-MAFGCGHTTCKDCGTTI-----SSCPMCREPITTR 429 (434)
Q Consensus 386 e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~l-----~~CPlCR~~i~~~ 429 (434)
+.+.||||.+.+++ +.++|||.|++.|+.++ ..||+|+.++...
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 56899999999999 99999999999998753 6799999998764
No 62
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0001 Score=73.76 Aligned_cols=41 Identities=29% Similarity=0.694 Sum_probs=35.4
Q ss_pred CCccCccccCCcc----ceecCCCCCchhhhcCC-----CCCCCcCcccc
Q 013923 387 EPVCPICLTNPKD----MAFGCGHTTCKDCGTTI-----SSCPMCREPIT 427 (434)
Q Consensus 387 ~~~CpICl~~~kd----v~l~CGH~fC~~Ci~~l-----~~CPlCR~~i~ 427 (434)
-..|.||++.+.. +++||.|.|...|+.+| ..||+||.++.
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 3689999998754 78899999999999987 47999998874
No 63
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=97.21 E-value=0.0024 Score=59.62 Aligned_cols=139 Identities=12% Similarity=0.154 Sum_probs=87.9
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---CCCcceEeeCCCCCCCCcceecCCC
Q 013923 105 SNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDE---DNLIPCFGFGDASTHDQYVFSFYPD 181 (434)
Q Consensus 105 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~---d~~ip~~GFGa~~~~~~~vf~~~~~ 181 (434)
-+++|+||-|.|=... +-.+|..+.|-..+...+..+.+ ...+-++.|++...+. +.++..|
T Consensus 4 r~ivi~lD~S~SM~a~-------------D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~~--~~PlT~D 68 (183)
T cd01453 4 RHLIIVIDCSRSMEEQ-------------DLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEK--LTDLTGN 68 (183)
T ss_pred eEEEEEEECcHHHhcC-------------CCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccEE--EECCCCC
Confidence 4789999999873211 22479999999999999987733 3578888896442211 2222221
Q ss_pred CCCcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHccC--ccEEEEEEeCCcccCCCCCCCCCCChhHHHHHH
Q 013923 182 NHYCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEASNR--QYHVLVIIADGQVTRNPDTPAGRLSPQEQATVN 259 (434)
Q Consensus 182 ~~~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~~~--~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~ 259 (434)
.+.++..-+.. +...|-|++...|+.|.+..+.... +=.|+||++||.-.+ ..+..+
T Consensus 69 ------~~~~~~~L~~~---~~~~G~t~l~~aL~~A~~~l~~~~~~~~~~iiil~sd~~~~~------------~~~~~~ 127 (183)
T cd01453 69 ------PRKHIQALKTA---RECSGEPSLQNGLEMALESLKHMPSHGSREVLIIFSSLSTCD------------PGNIYE 127 (183)
T ss_pred ------HHHHHHHhhcc---cCCCCchhHHHHHHHHHHHHhcCCccCceEEEEEEcCCCcCC------------hhhHHH
Confidence 22333333222 2446779999999999988865322 234788889986554 112233
Q ss_pred HHHHhccCCcEEEEEecccC
Q 013923 260 SIVAASHYPLSIILVGVGDG 279 (434)
Q Consensus 260 aIv~AS~~PLSIIiVGVGd~ 279 (434)
++..+.+..+-|-+||||.+
T Consensus 128 ~~~~l~~~~I~v~~IgiG~~ 147 (183)
T cd01453 128 TIDKLKKENIRVSVIGLSAE 147 (183)
T ss_pred HHHHHHHcCcEEEEEEechH
Confidence 44455566788888999854
No 64
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.00013 Score=74.82 Aligned_cols=42 Identities=29% Similarity=0.705 Sum_probs=35.3
Q ss_pred CccCccccCCcc----ceecCCCCCchhhhcCC-----CCCCCcCcccccc
Q 013923 388 PVCPICLTNPKD----MAFGCGHTTCKDCGTTI-----SSCPMCREPITTR 429 (434)
Q Consensus 388 ~~CpICl~~~kd----v~l~CGH~fC~~Ci~~l-----~~CPlCR~~i~~~ 429 (434)
..|.||++.++. ..+||.|.|...|+..| ..||+|++.+.+.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCC
Confidence 499999998876 55799999999999876 4599999987553
No 65
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.00 E-value=0.00018 Score=74.22 Aligned_cols=42 Identities=38% Similarity=0.920 Sum_probs=37.2
Q ss_pred CccCccccCCcccee-cCCCCCchhhhcCC------CCCCCcCcccccc
Q 013923 388 PVCPICLTNPKDMAF-GCGHTTCKDCGTTI------SSCPMCREPITTR 429 (434)
Q Consensus 388 ~~CpICl~~~kdv~l-~CGH~fC~~Ci~~l------~~CPlCR~~i~~~ 429 (434)
..|.||-++-||+.. +|||..|..|+..| ..||.||..|...
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 589999999999777 99999999998866 5899999998654
No 66
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=97.00 E-value=0.0077 Score=55.52 Aligned_cols=134 Identities=19% Similarity=0.287 Sum_probs=88.8
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---CCCcceEeeCCCCCCCCcceecCCCC
Q 013923 106 NLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDE---DNLIPCFGFGDASTHDQYVFSFYPDN 182 (434)
Q Consensus 106 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~---d~~ip~~GFGa~~~~~~~vf~~~~~~ 182 (434)
.+.+.||=+.|=+ +..+++++..+..++..++. .-.+-+..|+.... ..|+|. +
T Consensus 2 Di~fvlD~S~S~~------------------~~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~~~---~~~~l~--~ 58 (177)
T cd01469 2 DIVFVLDGSGSIY------------------PDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSESFR---TEFTLN--E 58 (177)
T ss_pred cEEEEEeCCCCCC------------------HHHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCcee---EEEecC--c
Confidence 5677787765521 35688888888888888886 35788888987632 235553 1
Q ss_pred CCcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHH--HHcc---CccEEEEEEeCCcccCCCCCCCCCCChhHHHH
Q 013923 183 HYCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIV--EASN---RQYHVLVIIADGQVTRNPDTPAGRLSPQEQAT 257 (434)
Q Consensus 183 ~~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~--~~~~---~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T 257 (434)
-...+.++++=+. ++ .+.|.|+....|+.|.+.. ...+ ..-.|+|+||||.-++.. .+
T Consensus 59 --~~~~~~~~~~i~~-~~--~~~g~T~~~~AL~~a~~~l~~~~~g~R~~~~kv~illTDG~~~~~~------------~~ 121 (177)
T cd01469 59 --YRTKEEPLSLVKH-IS--QLLGLTNTATAIQYVVTELFSESNGARKDATKVLVVITDGESHDDP------------LL 121 (177)
T ss_pred --cCCHHHHHHHHHh-Cc--cCCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEeCCCCCCcc------------cc
Confidence 1234555554332 22 3568899999999998875 2221 246788999999998721 22
Q ss_pred HHHHHHhccCCcEEEEEecccC
Q 013923 258 VNSIVAASHYPLSIILVGVGDG 279 (434)
Q Consensus 258 ~~aIv~AS~~PLSIIiVGVGd~ 279 (434)
.+++..|-..-+-|..||||+.
T Consensus 122 ~~~~~~~k~~gv~v~~Vgvg~~ 143 (177)
T cd01469 122 KDVIPQAEREGIIRYAIGVGGH 143 (177)
T ss_pred HHHHHHHHHCCcEEEEEEeccc
Confidence 3445555567899999999985
No 67
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.97 E-value=0.0004 Score=72.68 Aligned_cols=45 Identities=31% Similarity=0.662 Sum_probs=37.0
Q ss_pred ccCCCCccCccccCCcc-----ceecCCCCCchhhhcCC--CCCCCcCcccc
Q 013923 383 TALVEPVCPICLTNPKD-----MAFGCGHTTCKDCGTTI--SSCPMCREPIT 427 (434)
Q Consensus 383 ~~~e~~~CpICl~~~kd-----v~l~CGH~fC~~Ci~~l--~~CPlCR~~i~ 427 (434)
.+.+-.+|||||+.+-. +++.|.|.|.+.|+..| ..||+||--..
T Consensus 171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 171 GLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDSSCPVCRYCQS 222 (493)
T ss_pred CcccCCCcchhHhhcCccccceeeeecccccchHHHhhcccCcChhhhhhcC
Confidence 45667899999998765 44599999999999988 58999997654
No 68
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=96.97 E-value=0.012 Score=58.59 Aligned_cols=139 Identities=17% Similarity=0.311 Sum_probs=91.1
Q ss_pred eeceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCCcceEeeCCCCCCCCcceecCCCCC
Q 013923 104 SSNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDEDNLIPCFGFGDASTHDQYVFSFYPDNH 183 (434)
Q Consensus 104 ~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~d~~ip~~GFGa~~~~~~~vf~~~~~~~ 183 (434)
..++++|||-|+|=..+ +-.++..| |+..|.+.|..-.. +.+-+.+||.... .+.+|+.+
T Consensus 60 ~~qIvlaID~S~SM~~~-------------~~~~~ale-ak~lIs~al~~Le~-g~vgVv~Fg~~~~---~v~Plt~d-- 119 (266)
T cd01460 60 DYQILIAIDDSKSMSEN-------------NSKKLALE-SLCLVSKALTLLEV-GQLGVCSFGEDVQ---ILHPFDEQ-- 119 (266)
T ss_pred CceEEEEEecchhcccc-------------cccccHHH-HHHHHHHHHHhCcC-CcEEEEEeCCCce---EeCCCCCC--
Confidence 36899999999884321 11356666 88899998887775 6799999998631 22233211
Q ss_pred CcCCHHHHHHHHHHhcCCcccc-CCCChHHHHHHHHHHHHHcc----C--ccEEEEEEeCCcccCCCCCCCCCCChhHHH
Q 013923 184 YCHGFEEVLARYREILPHLKLS-GPTSFAPIIDAAIDIVEASN----R--QYHVLVIIADGQVTRNPDTPAGRLSPQEQA 256 (434)
Q Consensus 184 ~~~G~egvl~~Yr~~~~~v~l~-GPT~fapiI~~a~~~~~~~~----~--~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~ 256 (434)
+.. ++.-+++....+. +-|+.+..|..+++..++.. + .-.++|||+||.-.+. +..
T Consensus 120 ----~~~--~a~~~~l~~~~f~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~-----------e~~ 182 (266)
T cd01460 120 ----FSS--QSGPRILNQFTFQQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFS-----------EGA 182 (266)
T ss_pred ----chh--hHHHHHhCcccCCCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccC-----------ccH
Confidence 111 1222233332333 44899999999999876431 1 1379999999984331 233
Q ss_pred HHHHHHHhccCCcEEEEEecccC
Q 013923 257 TVNSIVAASHYPLSIILVGVGDG 279 (434)
Q Consensus 257 T~~aIv~AS~~PLSIIiVGVGd~ 279 (434)
...++.+|....+.+++|||=+.
T Consensus 183 ~~~~~r~a~e~~i~l~~I~ld~~ 205 (266)
T cd01460 183 QKVRLREAREQNVFVVFIIIDNP 205 (266)
T ss_pred HHHHHHHHHHcCCeEEEEEEcCC
Confidence 44558888889999999999765
No 69
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=96.93 E-value=0.013 Score=55.43 Aligned_cols=139 Identities=12% Similarity=0.162 Sum_probs=93.5
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---------CCCcceEeeCCCCCCCCcc
Q 013923 105 SNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDE---------DNLIPCFGFGDASTHDQYV 175 (434)
Q Consensus 105 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~---------d~~ip~~GFGa~~~~~~~v 175 (434)
+.+.+.||-+.|=+ .+.++++..-|..++..++. .-.+-+.-|+.... ..
T Consensus 20 ~DivfvlD~S~Sm~------------------~~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~a~---~~ 78 (193)
T cd01477 20 LDIVFVVDNSKGMT------------------QGGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSNAT---VV 78 (193)
T ss_pred eeEEEEEeCCCCcc------------------hhhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCceE---EE
Confidence 67889999886642 23588888888887777765 14677777776422 23
Q ss_pred eecCCCCCCcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHc-----cCccEEEEEEeCCcccCCCCCCCCCC
Q 013923 176 FSFYPDNHYCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEAS-----NRQYHVLVIIADGQVTRNPDTPAGRL 250 (434)
Q Consensus 176 f~~~~~~~~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~-----~~~Y~VLlIiTDG~i~d~~~~~~~~~ 250 (434)
|+|+ .....++++++.+..++.+...|-|+...-|++|.+..... ...-.|+++||||.-...
T Consensus 79 ~~L~----d~~~~~~~~~ai~~~~~~~~~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~~-------- 146 (193)
T cd01477 79 ADLN----DLQSFDDLYSQIQGSLTDVSSTNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDEG-------- 146 (193)
T ss_pred Eecc----cccCHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCCC--------
Confidence 4442 23467788888777666666667899999999998887542 123578899999854321
Q ss_pred ChhHHHHHHHHHHhccCCcEEEEEecccC
Q 013923 251 SPQEQATVNSIVAASHYPLSIILVGVGDG 279 (434)
Q Consensus 251 ~~~~~~T~~aIv~AS~~PLSIIiVGVGd~ 279 (434)
.....++..++.+..+-|.-||||.+
T Consensus 147 ---~~~~~~~a~~l~~~GI~i~tVGiG~~ 172 (193)
T cd01477 147 ---SNDPRPIAARLKSTGIAIITVAFTQD 172 (193)
T ss_pred ---CCCHHHHHHHHHHCCCEEEEEEeCCC
Confidence 01123334445577999999999985
No 70
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=96.87 E-value=0.023 Score=52.28 Aligned_cols=145 Identities=17% Similarity=0.256 Sum_probs=88.1
Q ss_pred eEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhccc-ccCCCCCcceEeeCCCCCCCCcceecCCCCCCc
Q 013923 107 LILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLS-PFDEDNLIPCFGFGDASTHDQYVFSFYPDNHYC 185 (434)
Q Consensus 107 livaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~-~yD~d~~ip~~GFGa~~~~~~~vf~~~~~~~~~ 185 (434)
+++.||.+.|=. + .+..+.|...+..++. .+..+..+-++.|.+... ..++.+ -
T Consensus 3 v~lvlD~SgSM~--~---------------~~rl~~ak~a~~~~~~~~~~~~d~v~lv~F~~~~~--~~~~~~------t 57 (178)
T cd01451 3 VIFVVDASGSMA--A---------------RHRMAAAKGAVLSLLRDAYQRRDKVALIAFRGTEA--EVLLPP------T 57 (178)
T ss_pred EEEEEECCccCC--C---------------ccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCc--eEEeCC------C
Confidence 467889887742 0 1456677777666664 344566799999975411 112221 1
Q ss_pred CCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHH-Hc--cCccEEEEEEeCCcccCCCCCCCCCCChhHHHHHHHHH
Q 013923 186 HGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVE-AS--NRQYHVLVIIADGQVTRNPDTPAGRLSPQEQATVNSIV 262 (434)
Q Consensus 186 ~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~-~~--~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv 262 (434)
...+.+. +.+..+...|-|++..-|+.+.+..+ +. .+.-.++++||||.-+... .+......+++.
T Consensus 58 ~~~~~~~----~~l~~l~~~G~T~l~~aL~~a~~~l~~~~~~~~~~~~ivliTDG~~~~g~-------~~~~~~~~~~~~ 126 (178)
T cd01451 58 RSVELAK----RRLARLPTGGGTPLAAGLLAAYELAAEQARDPGQRPLIVVITDGRANVGP-------DPTADRALAAAR 126 (178)
T ss_pred CCHHHHH----HHHHhCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCCCCCC-------CchhHHHHHHHH
Confidence 2344443 34555677899999999999998872 21 1223688999999876311 111122255555
Q ss_pred HhccCCcEEEEEecccCCc--cccccc
Q 013923 263 AASHYPLSIILVGVGDGPW--DSVQQF 287 (434)
Q Consensus 263 ~AS~~PLSIIiVGVGd~~f--~~m~~l 287 (434)
++....+.|+.||+|..+. +.|++|
T Consensus 127 ~l~~~gi~v~~I~~~~~~~~~~~l~~i 153 (178)
T cd01451 127 KLRARGISALVIDTEGRPVRRGLAKDL 153 (178)
T ss_pred HHHhcCCcEEEEeCCCCccCccHHHHH
Confidence 6667788889999987543 335544
No 71
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=96.86 E-value=0.017 Score=53.08 Aligned_cols=141 Identities=16% Similarity=0.227 Sum_probs=88.6
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---CCCcceEeeCCCCCCCCcceecCCCC
Q 013923 106 NLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDE---DNLIPCFGFGDASTHDQYVFSFYPDN 182 (434)
Q Consensus 106 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~---d~~ip~~GFGa~~~~~~~vf~~~~~~ 182 (434)
.+.+.||=+.|-+ ...++++..-|.+++..|+- .-.+.+.-|+.... ..|.|+.-
T Consensus 2 DivfllD~S~Si~------------------~~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~~~---~~~~l~~~- 59 (165)
T cd01481 2 DIVFLIDGSDNVG------------------SGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDTPR---PEFYLNTH- 59 (165)
T ss_pred CEEEEEeCCCCcC------------------HHHHHHHHHHHHHHHhhccCCCCCcEEEEEEecCCee---EEEecccc-
Confidence 3567777765542 35678888888888888873 45777888887532 34565421
Q ss_pred CCcCCHHHHHHHHHHhcCCccc-cC-CCChHHHHHHHHHHHHH--cc-----CccEEEEEEeCCcccCCCCCCCCCCChh
Q 013923 183 HYCHGFEEVLARYREILPHLKL-SG-PTSFAPIIDAAIDIVEA--SN-----RQYHVLVIIADGQVTRNPDTPAGRLSPQ 253 (434)
Q Consensus 183 ~~~~G~egvl~~Yr~~~~~v~l-~G-PT~fapiI~~a~~~~~~--~~-----~~Y~VLlIiTDG~i~d~~~~~~~~~~~~ 253 (434)
...++++++-.+ ++. .| .|+-...|+.+.+.+-. .+ +--.|||+||||.-.| +
T Consensus 60 ---~~~~~l~~~i~~----i~~~~g~~t~t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~d-----------~ 121 (165)
T cd01481 60 ---STKADVLGAVRR----LRLRGGSQLNTGSALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQD-----------D 121 (165)
T ss_pred ---CCHHHHHHHHHh----cccCCCCcccHHHHHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCcc-----------h
Confidence 245667665443 333 35 47888888888775421 11 2357899999998776 2
Q ss_pred HHHHHHHHHHhccCCcEEEEEecccCCcccccccCC
Q 013923 254 EQATVNSIVAASHYPLSIILVGVGDGPWDSVQQFDD 289 (434)
Q Consensus 254 ~~~T~~aIv~AS~~PLSIIiVGVGd~~f~~m~~lD~ 289 (434)
..+..+.+. +.-+-|+.||||..+.+.|+.+-+
T Consensus 122 ~~~~a~~lr---~~gv~i~~vG~~~~~~~eL~~ias 154 (165)
T cd01481 122 VERPAVALK---RAGIVPFAIGARNADLAELQQIAF 154 (165)
T ss_pred HHHHHHHHH---HCCcEEEEEeCCcCCHHHHHHHhC
Confidence 334444444 445778888888666665555544
No 72
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=96.73 E-value=0.00046 Score=55.59 Aligned_cols=36 Identities=31% Similarity=0.770 Sum_probs=27.2
Q ss_pred CccCccccCC----------c-c--ce-ecCCCCCchhhhcCC----CCCCCcC
Q 013923 388 PVCPICLTNP----------K-D--MA-FGCGHTTCKDCGTTI----SSCPMCR 423 (434)
Q Consensus 388 ~~CpICl~~~----------k-d--v~-l~CGH~fC~~Ci~~l----~~CPlCR 423 (434)
..|.||++.+ . + +. .+|||.|+..|+..| ..||+||
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 3599999877 1 2 33 389999999999854 6899997
No 73
>PRK13685 hypothetical protein; Provisional
Probab=96.70 E-value=0.013 Score=59.46 Aligned_cols=142 Identities=17% Similarity=0.183 Sum_probs=91.5
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCCcceEeeCCCCCCCCcceecCCCCCC
Q 013923 105 SNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDEDNLIPCFGFGDASTHDQYVFSFYPDNHY 184 (434)
Q Consensus 105 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~d~~ip~~GFGa~~~~~~~vf~~~~~~~~ 184 (434)
.+++++||-|.|=... +..+|..+.|-.++..++.....+..+-++.|++.... +.++.
T Consensus 89 ~~vvlvlD~S~SM~~~-------------D~~p~RL~~ak~~~~~~l~~l~~~d~vglv~Fa~~a~~---~~p~t----- 147 (326)
T PRK13685 89 AVVMLVIDVSQSMRAT-------------DVEPNRLAAAQEAAKQFADELTPGINLGLIAFAGTATV---LVSPT----- 147 (326)
T ss_pred ceEEEEEECCccccCC-------------CCCCCHHHHHHHHHHHHHHhCCCCCeEEEEEEcCceee---cCCCC-----
Confidence 4689999999885321 12468899999999999999877778999999986321 11211
Q ss_pred cCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHH--------ccCccEEEEEEeCCcccCCCCCCCCCCCh-hHH
Q 013923 185 CHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEA--------SNRQYHVLVIIADGQVTRNPDTPAGRLSP-QEQ 255 (434)
Q Consensus 185 ~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~--------~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~-~~~ 255 (434)
...+.+ ...+..+...|-|+...-|..|.+.+++ .+...-++|+||||.-+... ++ +..
T Consensus 148 -~d~~~l----~~~l~~l~~~~~T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~-------~~~~~~ 215 (326)
T PRK13685 148 -TNREAT----KNAIDKLQLADRTATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPT-------NPDNPR 215 (326)
T ss_pred -CCHHHH----HHHHHhCCCCCCcchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCC-------CCCCcc
Confidence 223323 3344456667778888888888887653 11123456888999765311 00 011
Q ss_pred HHHHHHHHhccCCcEEEEEecccC
Q 013923 256 ATVNSIVAASHYPLSIILVGVGDG 279 (434)
Q Consensus 256 ~T~~aIv~AS~~PLSIIiVGVGd~ 279 (434)
...+++..|.+..+.|-.||||..
T Consensus 216 ~~~~aa~~a~~~gi~i~~Ig~G~~ 239 (326)
T PRK13685 216 GAYTAARTAKDQGVPISTISFGTP 239 (326)
T ss_pred cHHHHHHHHHHcCCeEEEEEECCC
Confidence 123455566677888888999863
No 74
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=96.70 E-value=0.0082 Score=53.13 Aligned_cols=121 Identities=20% Similarity=0.313 Sum_probs=78.4
Q ss_pred eEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCCcceEeeCCCCCCCCcceecCCCCCCcC
Q 013923 107 LILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDEDNLIPCFGFGDASTHDQYVFSFYPDNHYCH 186 (434)
Q Consensus 107 livaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~d~~ip~~GFGa~~~~~~~vf~~~~~~~~~~ 186 (434)
+.||||-++|=. .....++++.|..+++.+ ...+-++=|-++......+ .
T Consensus 1 i~vaiDtSGSis------------------~~~l~~fl~ev~~i~~~~--~~~v~vi~~D~~v~~~~~~----------~ 50 (126)
T PF09967_consen 1 IVVAIDTSGSIS------------------DEELRRFLSEVAGILRRF--PAEVHVIQFDAEVQDVQVF----------R 50 (126)
T ss_pred CEEEEECCCCCC------------------HHHHHHHHHHHHHHHHhC--CCCEEEEEECCEeeeeeEE----------e
Confidence 578999887731 246788999999999999 3448788776664433222 1
Q ss_pred CHHHHHHHHHHhcCCcc--ccCCCChHHHHHHHHHHHHHccCccEEEEEEeCCcccCCCCCCCCCCChhHHHHHHHHHHh
Q 013923 187 GFEEVLARYREILPHLK--LSGPTSFAPIIDAAIDIVEASNRQYHVLVIIADGQVTRNPDTPAGRLSPQEQATVNSIVAA 264 (434)
Q Consensus 187 G~egvl~~Yr~~~~~v~--l~GPT~fapiI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~A 264 (434)
.. ...+..++ =.|-|+|.|+++.+.+. .....++++||||..... ..+
T Consensus 51 ~~-------~~~~~~~~~~GgGGTdf~pvf~~~~~~----~~~~~~vi~fTDg~~~~~-------------------~~~ 100 (126)
T PF09967_consen 51 SL-------EDELRDIKLKGGGGTDFRPVFEYLEEN----RPRPSVVIYFTDGEGWPP-------------------EEA 100 (126)
T ss_pred cc-------cccccccccCCCCCCcchHHHHHHHhc----CCCCCEEEEEeCCCCCCC-------------------CCC
Confidence 11 11122222 34689999999998653 345678889999988541 012
Q ss_pred ccCCcEEEEEe--cccCCccccccc
Q 013923 265 SHYPLSIILVG--VGDGPWDSVQQF 287 (434)
Q Consensus 265 S~~PLSIIiVG--VGd~~f~~m~~l 287 (434)
=.+|+=|++.| -...||+..-+|
T Consensus 101 P~~~vlWvl~~~~~~~~P~G~vv~l 125 (126)
T PF09967_consen 101 PPYPVLWVLPGNRNPKAPFGRVVRL 125 (126)
T ss_pred CCCcEEEEEeCCCCCCCCCEEEEEe
Confidence 27899999999 333466665444
No 75
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=96.61 E-value=0.031 Score=53.28 Aligned_cols=156 Identities=15% Similarity=0.184 Sum_probs=86.7
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCCcceEeeCCCCCCCCcceecCCCCCCc
Q 013923 106 NLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDEDNLIPCFGFGDASTHDQYVFSFYPDNHYC 185 (434)
Q Consensus 106 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~d~~ip~~GFGa~~~~~~~vf~~~~~~~~~ 185 (434)
.++++||.+.|=.. |+ . .+...-.-..|...+.+.+..|.+.....-.||++.......+ ..+.|.-
T Consensus 2 ~l~lavDlSgSM~~-----~~----~-~dg~~~~RL~a~k~v~~~f~~f~~~r~~DriG~~g~~~~~~~l---t~d~p~t 68 (191)
T cd01455 2 RLKLVVDVSGSMYR-----FN----G-YDGRLDRSLEAVVMVMEAFDGFEDKIQYDIIGHSGDGPCVPFV---KTNHPPK 68 (191)
T ss_pred ceEEEEECcHhHHH-----Hh----c-cCCccccHHHHHHHHHHHHHHHHHhCccceeeecCcccccCcc---ccccCcc
Confidence 58999999998431 11 0 1222233344555665656666666777778886543221111 1223222
Q ss_pred CCHH--HHHHHHHHhcCCccccCCCChHHHHHHHHHHHH-HccCccEEEEEEeCCcccCCCCCCCCCCChhHHHHHHHHH
Q 013923 186 HGFE--EVLARYREILPHLKLSGPTSFAPIIDAAIDIVE-ASNRQYHVLVIIADGQVTRNPDTPAGRLSPQEQATVNSIV 262 (434)
Q Consensus 186 ~G~e--gvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~-~~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv 262 (434)
..-+ ++|...-.- -++-+.|+..= .-|..+++..+ ++..+=.|+++||||.-+. |.++|.. . |-.
T Consensus 69 ~d~~~~~~l~~~l~~-~q~g~ag~~Ta-dAi~~av~rl~~~~~a~~kvvILLTDG~n~~------~~i~P~~---a-Aa~ 136 (191)
T cd01455 69 NNKERLETLKMMHAH-SQFCWSGDHTV-EATEFAIKELAAKEDFDEAIVIVLSDANLER------YGIQPKK---L-ADA 136 (191)
T ss_pred cchhHHHHHHHHHHh-cccCccCccHH-HHHHHHHHHHHhcCcCCCcEEEEEeCCCcCC------CCCChHH---H-HHH
Confidence 2332 333333222 24566787443 88888888876 6544556888899998765 4455521 1 122
Q ss_pred HhccCCcEEEEEecccCCcccccc
Q 013923 263 AASHYPLSIILVGVGDGPWDSVQQ 286 (434)
Q Consensus 263 ~AS~~PLSIIiVGVGd~~f~~m~~ 286 (434)
-|.+.-+=|-.||||..+.+.++.
T Consensus 137 lA~~~gV~iytIgiG~~d~~~l~~ 160 (191)
T cd01455 137 LAREPNVNAFVIFIGSLSDEADQL 160 (191)
T ss_pred HHHhCCCEEEEEEecCCCHHHHHH
Confidence 345667777778888754444443
No 76
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=96.54 E-value=0.033 Score=52.84 Aligned_cols=162 Identities=11% Similarity=0.134 Sum_probs=99.6
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCC---CCcceEeeCCCCCCCCcceecCCCC
Q 013923 106 NLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDED---NLIPCFGFGDASTHDQYVFSFYPDN 182 (434)
Q Consensus 106 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~d---~~ip~~GFGa~~~~~~~vf~~~~~~ 182 (434)
-.+|+||.+.|-... +-.||.++.+...+..++..|-+. ..+-+..|+++.... +.++.
T Consensus 5 a~vi~lD~S~sM~a~-------------D~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~~a~v--~~plT--- 66 (187)
T cd01452 5 ATMICIDNSEYMRNG-------------DYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGNSPEV--LVTLT--- 66 (187)
T ss_pred EEEEEEECCHHHHcC-------------CCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCceEE--EECCC---
Confidence 368999999874321 125899999999999887554443 456666787742211 11221
Q ss_pred CCcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHcc---CccEEEEEEeCCcccCCCCCCCCCCChhHHHHHH
Q 013923 183 HYCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEASN---RQYHVLVIIADGQVTRNPDTPAGRLSPQEQATVN 259 (434)
Q Consensus 183 ~~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~~---~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~ 259 (434)
...+-++. .+..+.+.|.+++...|+.|....+... ..=-|++|++++.-.| +....+
T Consensus 67 ---~D~~~~~~----~L~~i~~~g~~~l~~AL~~A~~~L~~~~~~~~~~rivi~v~S~~~~d------------~~~i~~ 127 (187)
T cd01452 67 ---NDQGKILS----KLHDVQPKGKANFITGIQIAQLALKHRQNKNQKQRIVAFVGSPIEED------------EKDLVK 127 (187)
T ss_pred ---CCHHHHHH----HHHhCCCCCcchHHHHHHHHHHHHhcCCCcCCcceEEEEEecCCcCC------------HHHHHH
Confidence 12334444 3345667799999999999988765331 2235566666653333 456667
Q ss_pred HHHHhccCCcEEEEEecccCC--cccccccCCCCCcccccceeeeeccc
Q 013923 260 SIVAASHYPLSIILVGVGDGP--WDSVQQFDDNIPQRAFDNFQFVNFTK 306 (434)
Q Consensus 260 aIv~AS~~PLSIIiVGVGd~~--f~~m~~lD~~~~~r~rDnvqFV~f~~ 306 (434)
++.++.+..+.|-+||+|+.. =+.++.|-+... .-||-+||....
T Consensus 128 ~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~--~~~~s~~~~~~~ 174 (187)
T cd01452 128 LAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVN--GKDGSHLVSVPP 174 (187)
T ss_pred HHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhc--CCCCceEEEeCC
Confidence 777888889999999999762 222333322221 136777776544
No 77
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=96.53 E-value=0.096 Score=49.86 Aligned_cols=155 Identities=12% Similarity=0.205 Sum_probs=96.1
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc---cCCCCCcceEeeCCCCCCC----Ccceec
Q 013923 106 NLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSP---FDEDNLIPCFGFGDASTHD----QYVFSF 178 (434)
Q Consensus 106 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~---yD~d~~ip~~GFGa~~~~~----~~vf~~ 178 (434)
.++++||.+.|=... + -+..+++.+.|+..|..+++. ......+-++.||...+.. .+++.+
T Consensus 3 ~ivf~iDvS~SM~~~----------~-~~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~~~~~~~i~v~ 71 (218)
T cd01458 3 SVVFLVDVSPSMFES----------K-DGEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKNPVGYENIYVL 71 (218)
T ss_pred EEEEEEeCCHHHcCC----------C-CCCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCCcCCCCceEEe
Confidence 478999998764310 0 011368999999999999997 6666789999999875432 344444
Q ss_pred CCCCCCcCCHHHHHHHHHHhcCCcc--------ccCCCChHHHHHHHHHHHHHc--cCccEEEEEEeCCcccCCCCCCCC
Q 013923 179 YPDNHYCHGFEEVLARYREILPHLK--------LSGPTSFAPIIDAAIDIVEAS--NRQYHVLVIIADGQVTRNPDTPAG 248 (434)
Q Consensus 179 ~~~~~~~~G~egvl~~Yr~~~~~v~--------l~GPT~fapiI~~a~~~~~~~--~~~Y~VLlIiTDG~i~d~~~~~~~ 248 (434)
.|-+ .... +.++...+.+.... -.+.|.+..+|..|.++..+. ...=-.+++||||.=.- +
T Consensus 72 ~~l~--~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~~~~~~~k~IvL~TDg~~p~------~ 142 (218)
T cd01458 72 LDLD--TPGA-ERVEDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKGKKKKSHKRIFLFTNNDDPH------G 142 (218)
T ss_pred ecCC--CCCH-HHHHHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhccccccccEEEEECCCCCCC------C
Confidence 3321 1122 33444444332221 245789999999999987652 11224668889985320 1
Q ss_pred CCChhHHHHHHHHHHhccCCcEEEEEecccCC
Q 013923 249 RLSPQEQATVNSIVAASHYPLSIILVGVGDGP 280 (434)
Q Consensus 249 ~~~~~~~~T~~aIv~AS~~PLSIIiVGVGd~~ 280 (434)
.=.-..++....+.+..+.-+.|.+||||..+
T Consensus 143 ~~~~~~~~~~~~a~~l~~~gI~i~~i~i~~~~ 174 (218)
T cd01458 143 GDSIKDSQAAVKAEDLKDKGIELELFPLSSPG 174 (218)
T ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEecCCCC
Confidence 00011344556666677778999999998654
No 78
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.00092 Score=68.63 Aligned_cols=42 Identities=31% Similarity=0.807 Sum_probs=34.0
Q ss_pred CCCCccCccccCCc-----------c---ceecCCCCCchhhhcCC----CCCCCcCccc
Q 013923 385 LVEPVCPICLTNPK-----------D---MAFGCGHTTCKDCGTTI----SSCPMCREPI 426 (434)
Q Consensus 385 ~e~~~CpICl~~~k-----------d---v~l~CGH~fC~~Ci~~l----~~CPlCR~~i 426 (434)
.++..|.||++... + -.++|||.+.-.|++.| ..||+||.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 45789999997621 1 35799999999999876 6899999994
No 79
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.0018 Score=64.24 Aligned_cols=43 Identities=33% Similarity=0.797 Sum_probs=35.4
Q ss_pred CCCCccCccccCCcc-cee-cCCCCCchhhhcCC------CCCCCcCcccc
Q 013923 385 LVEPVCPICLTNPKD-MAF-GCGHTTCKDCGTTI------SSCPMCREPIT 427 (434)
Q Consensus 385 ~e~~~CpICl~~~kd-v~l-~CGH~fC~~Ci~~l------~~CPlCR~~i~ 427 (434)
..+.+|++|-+.+.. ... +|||.+|..|+... ..||.|..+..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 345799999999988 555 79999999998743 58999988765
No 80
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=96.43 E-value=0.052 Score=59.81 Aligned_cols=158 Identities=16% Similarity=0.227 Sum_probs=100.7
Q ss_pred CceeceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcc-cccCCCCCcceEeeCCCCCCCCcceecCC
Q 013923 102 LESSNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTL-SPFDEDNLIPCFGFGDASTHDQYVFSFYP 180 (434)
Q Consensus 102 l~~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl-~~yD~d~~ip~~GFGa~~~~~~~vf~~~~ 180 (434)
-....+++.||.|.|-. .+....|-.++..+| ..|-....+-++.|+.... ..+..
T Consensus 399 ~~~~~vvfvvD~SGSM~------------------~~rl~~aK~a~~~ll~~ay~~rD~v~lI~F~g~~a--~~~lp--- 455 (584)
T PRK13406 399 RSETTTIFVVDASGSAA------------------LHRLAEAKGAVELLLAEAYVRRDQVALVAFRGRGA--ELLLP--- 455 (584)
T ss_pred cCCccEEEEEECCCCCc------------------HhHHHHHHHHHHHHHHhhcCCCCEEEEEEECCCce--eEEcC---
Confidence 34578899999988731 145566666666666 3466666799999965311 11111
Q ss_pred CCCCcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHc--cCccEEEEEEeCCcccCCCCCCCCCCChhHHHHH
Q 013923 181 DNHYCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEAS--NRQYHVLVIIADGQVTRNPDTPAGRLSPQEQATV 258 (434)
Q Consensus 181 ~~~~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~--~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~ 258 (434)
.-..++.+ ++.+..+.-.|-|.++.-|..|.+.+++. .+.-.++|+||||..+...+...|. ....++..
T Consensus 456 ---pT~~~~~~----~~~L~~l~~gGgTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~-~~~~~~~~ 527 (584)
T PRK13406 456 ---PTRSLVRA----KRSLAGLPGGGGTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGTAGR-AQAEEDAL 527 (584)
T ss_pred ---CCcCHHHH----HHHHhcCCCCCCChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCccccccc-cchhhHHH
Confidence 11244444 34556788889999999999999887653 2234677889999876422111111 11234455
Q ss_pred HHHHHhccCCcEEEEEecccCCcccccccCCC
Q 013923 259 NSIVAASHYPLSIILVGVGDGPWDSVQQFDDN 290 (434)
Q Consensus 259 ~aIv~AS~~PLSIIiVGVGd~~f~~m~~lD~~ 290 (434)
.+...+...-+.+++|++|......|++|=+.
T Consensus 528 ~~a~~~~~~gi~~~vId~g~~~~~~~~~LA~~ 559 (584)
T PRK13406 528 AAARALRAAGLPALVIDTSPRPQPQARALAEA 559 (584)
T ss_pred HHHHHHHhcCCeEEEEecCCCCcHHHHHHHHh
Confidence 66666666778999999998876677766543
No 81
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.0014 Score=63.06 Aligned_cols=44 Identities=27% Similarity=0.766 Sum_probs=38.7
Q ss_pred cCccccCCcc-ceecCCCC-CchhhhcCCCCCCCcCcccccccccC
Q 013923 390 CPICLTNPKD-MAFGCGHT-TCKDCGTTISSCPMCREPITTRLRLY 433 (434)
Q Consensus 390 CpICl~~~kd-v~l~CGH~-fC~~Ci~~l~~CPlCR~~i~~~i~ly 433 (434)
|..|-+.... +.+||.|. +|..|......||+|+.+....+++|
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v~ 206 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDESLRICPICRSPKTSSVEVN 206 (207)
T ss_pred ceecCcCCceEEeecccceEecccccccCccCCCCcChhhceeecc
Confidence 9999988888 55699999 89999988888999999998888775
No 82
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.0015 Score=70.96 Aligned_cols=42 Identities=31% Similarity=0.780 Sum_probs=34.6
Q ss_pred CCCCccCccccCCcc------ceecCCCCCchhhhcCC----CCCCCcCccc
Q 013923 385 LVEPVCPICLTNPKD------MAFGCGHTTCKDCGTTI----SSCPMCREPI 426 (434)
Q Consensus 385 ~e~~~CpICl~~~kd------v~l~CGH~fC~~Ci~~l----~~CPlCR~~i 426 (434)
..+..|+||++.+.. ..++|+|.||..|+..| ..||+||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 346799999987665 44699999999999876 6899999943
No 83
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.0023 Score=67.12 Aligned_cols=45 Identities=27% Similarity=0.685 Sum_probs=38.4
Q ss_pred cCCCCccCccccCCcc-ceecCCCCCchhhhcCC----CCCCCcCccccc
Q 013923 384 ALVEPVCPICLTNPKD-MAFGCGHTTCKDCGTTI----SSCPMCREPITT 428 (434)
Q Consensus 384 ~~e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~l----~~CPlCR~~i~~ 428 (434)
...++.|.||...+.. ++++|||.||..|+.+. ..||.||..+..
T Consensus 81 ~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred ccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 3567999999998888 88899999999997643 689999998864
No 84
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=96.04 E-value=0.087 Score=52.28 Aligned_cols=134 Identities=19% Similarity=0.180 Sum_probs=77.8
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc-cCCCCCcceEeeCCCCCCCCcceecCCCCC
Q 013923 105 SNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSP-FDEDNLIPCFGFGDASTHDQYVFSFYPDNH 183 (434)
Q Consensus 105 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~-yD~d~~ip~~GFGa~~~~~~~vf~~~~~~~ 183 (434)
+++++.||.+.|=. +..+.|..++...|.. +..+..+-++.|++.... ++.|.
T Consensus 54 ~~vvlvlD~SgSM~-------------------~~~~~a~~a~~~~l~~~l~~~d~v~lv~f~~~~~~---~~~~t---- 107 (296)
T TIGR03436 54 LTVGLVIDTSGSMR-------------------NDLDRARAAAIRFLKTVLRPNDRVFVVTFNTRLRL---LQDFT---- 107 (296)
T ss_pred ceEEEEEECCCCch-------------------HHHHHHHHHHHHHHHhhCCCCCEEEEEEeCCceeE---eecCC----
Confidence 78999999987742 1245566666666655 556778999999976432 22222
Q ss_pred CcCCHHHHHHHHHHhcC-----------CccccCCCChHHHHHHHHH-HHHHcc----CccEEEEEEeCCcccCCCCCCC
Q 013923 184 YCHGFEEVLARYREILP-----------HLKLSGPTSFAPIIDAAID-IVEASN----RQYHVLVIIADGQVTRNPDTPA 247 (434)
Q Consensus 184 ~~~G~egvl~~Yr~~~~-----------~v~l~GPT~fapiI~~a~~-~~~~~~----~~Y~VLlIiTDG~i~d~~~~~~ 247 (434)
...+.+.++-.+..+ .+...|.|.+..-|..++. ...+.. +. -++|+||||.-+..
T Consensus 108 --~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~g~T~l~~al~~aa~~~~~~~~~~~p~r-k~iIllTDG~~~~~----- 179 (296)
T TIGR03436 108 --SDPRLLEAALNRLKPPLRTDYNSSGAFVRDGGGTALYDAITLAALEQLANALAGIPGR-KALIVISDGGDNRS----- 179 (296)
T ss_pred --CCHHHHHHHHHhccCCCccccccccccccCCCcchhHHHHHHHHHHHHHHhhcCCCCC-eEEEEEecCCCcch-----
Confidence 234445444443322 1233688888777765543 332221 22 57899999965431
Q ss_pred CCCChhHHHHHHHHHHhccCCcEEEEEeccc
Q 013923 248 GRLSPQEQATVNSIVAASHYPLSIILVGVGD 278 (434)
Q Consensus 248 ~~~~~~~~~T~~aIv~AS~~PLSIIiVGVGd 278 (434)
.....+++..+...-+.|-.||+|+
T Consensus 180 ------~~~~~~~~~~~~~~~v~vy~I~~~~ 204 (296)
T TIGR03436 180 ------RDTLERAIDAAQRADVAIYSIDARG 204 (296)
T ss_pred ------HHHHHHHHHHHHHcCCEEEEeccCc
Confidence 1122233333445567888888875
No 85
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=95.98 E-value=0.13 Score=56.66 Aligned_cols=155 Identities=14% Similarity=0.149 Sum_probs=91.0
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc-cCCCCCcceEeeCCCCCCCCcceecCCCCC
Q 013923 105 SNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSP-FDEDNLIPCFGFGDASTHDQYVFSFYPDNH 183 (434)
Q Consensus 105 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~-yD~d~~ip~~GFGa~~~~~~~vf~~~~~~~ 183 (434)
..+++.||-|.|=. .+..+.|-.++..++.. |-....+-++.|+.... ..++.+
T Consensus 408 ~~v~fvvD~SGSM~------------------~~rl~~aK~av~~Ll~~~~~~~D~v~Li~F~~~~a--~~~lp~----- 462 (589)
T TIGR02031 408 RLLIFVVDASGSAA------------------VARMSEAKGAVELLLGEAYVHRDQVSLIAFRGTAA--EVLLPP----- 462 (589)
T ss_pred ceEEEEEECCCCCC------------------hHHHHHHHHHHHHHHHhhccCCCEEEEEEECCCCc--eEECCC-----
Confidence 44778888887631 24567777777776653 43334699999975421 012211
Q ss_pred CcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHcc--CccEEEEEEeCCcccCCCCCCCCCCChh----HHHH
Q 013923 184 YCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEASN--RQYHVLVIIADGQVTRNPDTPAGRLSPQ----EQAT 257 (434)
Q Consensus 184 ~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~~--~~Y~VLlIiTDG~i~d~~~~~~~~~~~~----~~~T 257 (434)
-.+.+.+ ++.+..+...|.|.++.-|..|.+.+++.. ..-.++|+||||.-+-..+...+...++ .++.
T Consensus 463 -t~~~~~~----~~~L~~l~~gGgTpL~~gL~~A~~~~~~~~~~~~~~~ivllTDG~~nv~~~~~~~~~~~~~~~~~~~~ 537 (589)
T TIGR02031 463 -SRSVEQA----KRRLDVLPGGGGTPLAAGLAAAFQTALQARSSGGTPTIVLITDGRGNIPLDGDPESIKADREQAAEEA 537 (589)
T ss_pred -CCCHHHH----HHHHhcCCCCCCCcHHHHHHHHHHHHHHhcccCCceEEEEECCCCCCCCCCcccccccccchhHHHHH
Confidence 2344443 345778888999999999999999876532 2235778899997653111000000111 1122
Q ss_pred HHHHHHhccCCcEEEEEecccCCc--ccccccCC
Q 013923 258 VNSIVAASHYPLSIILVGVGDGPW--DSVQQFDD 289 (434)
Q Consensus 258 ~~aIv~AS~~PLSIIiVGVGd~~f--~~m~~lD~ 289 (434)
..+........+.+++||+|.+.. +.|++|=+
T Consensus 538 ~~~a~~~~~~gi~~~vid~~~~~~~~~~~~~lA~ 571 (589)
T TIGR02031 538 LALARKIREAGMPALVIDTAMRFVSTGFAQKLAR 571 (589)
T ss_pred HHHHHHHHhcCCeEEEEeCCCCCccchHHHHHHH
Confidence 222333345678999999998743 33665543
No 86
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.96 E-value=0.0039 Score=47.77 Aligned_cols=43 Identities=28% Similarity=0.719 Sum_probs=35.6
Q ss_pred CCCccCccccCCcc-ceecCCCCCchhhhc--CCCCCCCcCccccc
Q 013923 386 VEPVCPICLTNPKD-MAFGCGHTTCKDCGT--TISSCPMCREPITT 428 (434)
Q Consensus 386 e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~--~l~~CPlCR~~i~~ 428 (434)
....|-.|...-+. +.++|||..|..|.. +...||+|..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGERYNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChhhccCCCCCCCcccC
Confidence 34678888887666 888999999999965 66899999998865
No 87
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=95.68 E-value=0.005 Score=51.30 Aligned_cols=25 Identities=36% Similarity=0.861 Sum_probs=21.4
Q ss_pred cCCCCCchhhhcCC-------CCCCCcCcccc
Q 013923 403 GCGHTTCKDCGTTI-------SSCPMCREPIT 427 (434)
Q Consensus 403 ~CGH~fC~~Ci~~l-------~~CPlCR~~i~ 427 (434)
.|+|.|...|+..+ ..||+||++..
T Consensus 51 ~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 51 KCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred cCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 89999999998743 58999999864
No 88
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.0068 Score=62.45 Aligned_cols=46 Identities=33% Similarity=0.699 Sum_probs=37.4
Q ss_pred CCCCccCccccCCccce---------ecCCCCCchhhhcCC-----------CCCCCcCccccccc
Q 013923 385 LVEPVCPICLTNPKDMA---------FGCGHTTCKDCGTTI-----------SSCPMCREPITTRL 430 (434)
Q Consensus 385 ~e~~~CpICl~~~kdv~---------l~CGH~fC~~Ci~~l-----------~~CPlCR~~i~~~i 430 (434)
..+.+|-||++...+.. .+|-|.||..|+..| +.||.||......+
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~ 224 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN 224 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence 55779999998877644 579999999998855 57999999876554
No 89
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=95.27 E-value=0.38 Score=53.47 Aligned_cols=141 Identities=16% Similarity=0.243 Sum_probs=86.1
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhccc-ccCCCCCcceEeeCCCCCCCCcceecCCCCC
Q 013923 105 SNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLS-PFDEDNLIPCFGFGDASTHDQYVFSFYPDNH 183 (434)
Q Consensus 105 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~-~yD~d~~ip~~GFGa~~~~~~~vf~~~~~~~ 183 (434)
..+++.||.|.|=. ..+..+.|..++..++. .|-....+-+++|++... ..++.+
T Consensus 466 ~~vv~vvD~SgSM~-----------------~~~rl~~ak~a~~~ll~~a~~~~D~v~lI~F~g~~a--~~~~p~----- 521 (633)
T TIGR02442 466 NLVIFVVDASGSMA-----------------ARGRMAAAKGAVLSLLRDAYQKRDKVALITFRGEEA--EVLLPP----- 521 (633)
T ss_pred ceEEEEEECCccCC-----------------CccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCc--eEEcCC-----
Confidence 57889999998742 12566777777777664 465667799999975311 112211
Q ss_pred CcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHH----ccCccEEEEEEeCCcccCCCCCCCCCCChhHHHHHH
Q 013923 184 YCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEA----SNRQYHVLVIIADGQVTRNPDTPAGRLSPQEQATVN 259 (434)
Q Consensus 184 ~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~----~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~ 259 (434)
-.+.+.+. +.+..+...|-|.++.-|..|.+...+ ....=.++|+||||.-+.. +. + ..-.++...
T Consensus 522 -t~~~~~~~----~~L~~l~~gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~-~~--~--~~~~~~~~~ 591 (633)
T TIGR02442 522 -TSSVELAA----RRLEELPTGGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVA-DG--G--EPPTDDART 591 (633)
T ss_pred -CCCHHHHH----HHHHhCCCCCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCC-CC--C--CChHHHHHH
Confidence 13344332 345567778999999999999988763 2233467788999987642 10 1 011233333
Q ss_pred HHHHhccCCcEEEEEecccC
Q 013923 260 SIVAASHYPLSIILVGVGDG 279 (434)
Q Consensus 260 aIv~AS~~PLSIIiVGVGd~ 279 (434)
+-.......+-+++|+.+.+
T Consensus 592 ~a~~l~~~~i~~~vIdt~~~ 611 (633)
T TIGR02442 592 IAAKLAARGILFVVIDTESG 611 (633)
T ss_pred HHHHHHhcCCeEEEEeCCCC
Confidence 33333445677888888764
No 90
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.011 Score=59.96 Aligned_cols=50 Identities=26% Similarity=0.585 Sum_probs=37.1
Q ss_pred cCCCCccCccccCCcc--ceecCCCCCchhhhc----CCCCCCCcCcccc--cccccC
Q 013923 384 ALVEPVCPICLTNPKD--MAFGCGHTTCKDCGT----TISSCPMCREPIT--TRLRLY 433 (434)
Q Consensus 384 ~~e~~~CpICl~~~kd--v~l~CGH~fC~~Ci~----~l~~CPlCR~~i~--~~i~ly 433 (434)
..+...||||+.-..+ +..-.|.+||..|+- ....||+-..++. .-+|+|
T Consensus 297 ~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~ 354 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVDHLIRLF 354 (357)
T ss_pred CCccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcchHHHHHHHh
Confidence 4566799999987766 555789999999976 4579999766653 335555
No 91
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.15 E-value=0.0049 Score=58.67 Aligned_cols=41 Identities=24% Similarity=0.649 Sum_probs=34.2
Q ss_pred CCccCccccCCcc-ceecCCCCCchhhhcC----CCCCCCcCcccc
Q 013923 387 EPVCPICLTNPKD-MAFGCGHTTCKDCGTT----ISSCPMCREPIT 427 (434)
Q Consensus 387 ~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~----l~~CPlCR~~i~ 427 (434)
.+.|-||..-++. +++.|||.||..|+.+ -..|-+|.+...
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~ 241 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATY 241 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhc
Confidence 4799999998888 9999999999999763 367888876543
No 92
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.87 E-value=0.014 Score=59.77 Aligned_cols=46 Identities=28% Similarity=0.772 Sum_probs=37.4
Q ss_pred ccCCCCccCccccCCcc-ceecCCCCCchhhhcCC------CCCCCcCccccc
Q 013923 383 TALVEPVCPICLTNPKD-MAFGCGHTTCKDCGTTI------SSCPMCREPITT 428 (434)
Q Consensus 383 ~~~e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~l------~~CPlCR~~i~~ 428 (434)
..+++..|.||-.-..- ..+||+|.+|.-|+-++ +.|++||..-..
T Consensus 57 tDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~ 109 (493)
T COG5236 57 TDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEA 109 (493)
T ss_pred cccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccce
Confidence 45677899999987776 66799999999997653 789999986543
No 93
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=94.77 E-value=0.018 Score=60.29 Aligned_cols=46 Identities=33% Similarity=0.819 Sum_probs=39.0
Q ss_pred cCCCCccCccccCCcc-ce-ecCCCCCchhhhcCC----CCCCCcCcccccc
Q 013923 384 ALVEPVCPICLTNPKD-MA-FGCGHTTCKDCGTTI----SSCPMCREPITTR 429 (434)
Q Consensus 384 ~~e~~~CpICl~~~kd-v~-l~CGH~fC~~Ci~~l----~~CPlCR~~i~~~ 429 (434)
.++++.|++|.....+ +. ..|||.||..|+..+ ..||.|+..+...
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQA 69 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchh
Confidence 5678999999999999 55 599999999998865 5899998887654
No 94
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=94.75 E-value=0.0048 Score=62.61 Aligned_cols=48 Identities=29% Similarity=0.489 Sum_probs=39.1
Q ss_pred CCCCccCccccCCccce--ecCCCCCchhhhcC----CCCCCCcCccccccccc
Q 013923 385 LVEPVCPICLTNPKDMA--FGCGHTTCKDCGTT----ISSCPMCREPITTRLRL 432 (434)
Q Consensus 385 ~e~~~CpICl~~~kdv~--l~CGH~fC~~Ci~~----l~~CPlCR~~i~~~i~l 432 (434)
.....|.+|-.++.|.+ .-|-|.||..|+.+ ...||+|...+.+..++
T Consensus 13 n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl 66 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPL 66 (331)
T ss_pred ccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCcccc
Confidence 34579999999999933 39999999999864 48999999988776543
No 95
>PRK10997 yieM hypothetical protein; Provisional
Probab=94.66 E-value=0.58 Score=50.62 Aligned_cols=146 Identities=16% Similarity=0.160 Sum_probs=83.3
Q ss_pred eeceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHH-HHHHhhcccccCCCCCcceEeeCCCCCCCCcceecCCCC
Q 013923 104 SSNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQA-ISIIGRTLSPFDEDNLIPCFGFGDASTHDQYVFSFYPDN 182 (434)
Q Consensus 104 ~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~A-I~~Ig~vl~~yD~d~~ip~~GFGa~~~~~~~vf~~~~~~ 182 (434)
.-.++|.||-|+|=. |. +-.|.+| +-+++.+...=. ..+-++.|++..... .+
T Consensus 323 kGpiII~VDtSGSM~--G~--------------ke~~AkalAaAL~~iAl~q~--dr~~li~Fs~~i~~~----~l---- 376 (487)
T PRK10997 323 RGPFIVCVDTSGSMG--GF--------------NEQCAKAFCLALMRIALAEN--RRCYIMLFSTEVVTY----EL---- 376 (487)
T ss_pred CCcEEEEEECCCCCC--CC--------------HHHHHHHHHHHHHHHHHhcC--CCEEEEEecCCceee----cc----
Confidence 357999999998842 21 2255555 333444333222 236688898753321 11
Q ss_pred CCcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHccCccEEEEEEeCCcccCCCCCCCCCCChhHHHHHHHHH
Q 013923 183 HYCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEASNRQYHVLVIIADGQVTRNPDTPAGRLSPQEQATVNSIV 262 (434)
Q Consensus 183 ~~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv 262 (434)
+.-.|+..+++.-.. .+.|.|++++.++.+++.+++..-+=-.+|||+|+..... +.+..+.++.+.
T Consensus 377 ~~~~gl~~ll~fL~~-----~f~GGTDl~~aL~~al~~l~~~~~r~adIVVISDF~~~~~--------~eel~~~L~~Lk 443 (487)
T PRK10997 377 TGPDGLEQAIRFLSQ-----SFRGGTDLAPCLRAIIEKMQGREWFDADAVVISDFIAQRL--------PDELVAKVKELQ 443 (487)
T ss_pred CCccCHHHHHHHHHH-----hcCCCCcHHHHHHHHHHHHcccccCCceEEEECCCCCCCC--------hHHHHHHHHHHH
Confidence 123588887776543 2589999999999999988654223366889999965431 011333444444
Q ss_pred HhccCCcEEEEEecccCCcccccccCC
Q 013923 263 AASHYPLSIILVGVGDGPWDSVQQFDD 289 (434)
Q Consensus 263 ~AS~~PLSIIiVGVGd~~f~~m~~lD~ 289 (434)
+....=+--+.||- .+.=+-|+.||.
T Consensus 444 ~~~~~rf~~l~i~~-~~~p~l~~ifD~ 469 (487)
T PRK10997 444 RQHQHRFHAVAMSA-HGKPGIMRIFDH 469 (487)
T ss_pred HhcCcEEEEEEeCC-CCCchHHHhcCe
Confidence 44444444444442 122234666764
No 96
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=0.015 Score=58.34 Aligned_cols=41 Identities=24% Similarity=0.518 Sum_probs=35.3
Q ss_pred CccCccccCCcc-ceecCCCCCchhhhcC----CCCCCCcCccccc
Q 013923 388 PVCPICLTNPKD-MAFGCGHTTCKDCGTT----ISSCPMCREPITT 428 (434)
Q Consensus 388 ~~CpICl~~~kd-v~l~CGH~fC~~Ci~~----l~~CPlCR~~i~~ 428 (434)
+.|-||...+.+ |++.|+|.||..|... ...|.+|.+.+..
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHG 287 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccccCCcceeccccccc
Confidence 579999999998 9999999999999764 3679999887654
No 97
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=94.32 E-value=0.0086 Score=66.54 Aligned_cols=46 Identities=28% Similarity=0.538 Sum_probs=37.3
Q ss_pred CCCCccCccccCCcc----ceecCCCCCchhhhcCC----CCCCCcCccccccc
Q 013923 385 LVEPVCPICLTNPKD----MAFGCGHTTCKDCGTTI----SSCPMCREPITTRL 430 (434)
Q Consensus 385 ~e~~~CpICl~~~kd----v~l~CGH~fC~~Ci~~l----~~CPlCR~~i~~~i 430 (434)
.....||+|+.-..+ ....|+|.||..|+..| ..||+||..+.+.+
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVK 174 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheee
Confidence 345689999987766 22399999999999987 47999999987764
No 98
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=0.011 Score=62.72 Aligned_cols=43 Identities=30% Similarity=0.662 Sum_probs=32.8
Q ss_pred CCCCccCccccCC-----------------cc-ceecCCCCCchhhhcCC----C-CCCCcCcccc
Q 013923 385 LVEPVCPICLTNP-----------------KD-MAFGCGHTTCKDCGTTI----S-SCPMCREPIT 427 (434)
Q Consensus 385 ~e~~~CpICl~~~-----------------kd-v~l~CGH~fC~~Ci~~l----~-~CPlCR~~i~ 427 (434)
+....|+||++.. ++ |.+||.|.|...|+.+| + .||+||.++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 3456899999432 12 45599999999999866 3 7999999875
No 99
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.26 E-value=0.016 Score=58.24 Aligned_cols=37 Identities=38% Similarity=0.864 Sum_probs=32.5
Q ss_pred CccCccccCCcc-cee-cCCCCCchhhhcC-----CCCCCCcCc
Q 013923 388 PVCPICLTNPKD-MAF-GCGHTTCKDCGTT-----ISSCPMCRE 424 (434)
Q Consensus 388 ~~CpICl~~~kd-v~l-~CGH~fC~~Ci~~-----l~~CPlCR~ 424 (434)
+.|+.|..++++ +.+ .|+|.||.+|+.. -+.||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 689999999999 777 8999999999984 278999966
No 100
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=0.022 Score=58.48 Aligned_cols=45 Identities=27% Similarity=0.739 Sum_probs=36.8
Q ss_pred CCCCccCccccCCcc-ceecCCCCCchhhhc----CCCCCCCcCcccccc
Q 013923 385 LVEPVCPICLTNPKD-MAFGCGHTTCKDCGT----TISSCPMCREPITTR 429 (434)
Q Consensus 385 ~e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~----~l~~CPlCR~~i~~~ 429 (434)
.++..||||..-+.. |..||+|.-|..|+. +.+.|=.|+..+...
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~~ 469 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVIDV 469 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceeeeh
Confidence 566799999998888 666999999999987 357888998877643
No 101
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.12 E-value=0.03 Score=55.43 Aligned_cols=45 Identities=20% Similarity=0.505 Sum_probs=37.2
Q ss_pred CCCCccCccccCCcc----cee-cCCCCCchhhhcCCC---CCCCcCcccccc
Q 013923 385 LVEPVCPICLTNPKD----MAF-GCGHTTCKDCGTTIS---SCPMCREPITTR 429 (434)
Q Consensus 385 ~e~~~CpICl~~~kd----v~l-~CGH~fC~~Ci~~l~---~CPlCR~~i~~~ 429 (434)
...+.|||+...+.. +.+ +|||+|+..|+..+. .||+|..++...
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELKKSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhcccccccccCCccccC
Confidence 456899999987743 555 999999999999776 799999998753
No 102
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=93.48 E-value=1 Score=43.35 Aligned_cols=102 Identities=20% Similarity=0.234 Sum_probs=62.8
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHH-hhcccccCCCCCcceEeeCCCCCCCCcceecCCCCC
Q 013923 105 SNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISII-GRTLSPFDEDNLIPCFGFGDASTHDQYVFSFYPDNH 183 (434)
Q Consensus 105 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~I-g~vl~~yD~d~~ip~~GFGa~~~~~~~vf~~~~~~~ 183 (434)
..++|.+|-+.|=. .|...+-.+ -.+...+. .+-+|-|+.........+
T Consensus 58 ~~lvvl~DvSGSM~--------------------~~s~~~l~~~~~l~~~~~---~~~~f~F~~~l~~vT~~l------- 107 (222)
T PF05762_consen 58 RRLVVLCDVSGSMA--------------------GYSEFMLAFLYALQRQFR---RVRVFVFSTRLTEVTPLL------- 107 (222)
T ss_pred ccEEEEEeCCCChH--------------------HHHHHHHHHHHHHHHhCC---CEEEEEEeeehhhhhhhh-------
Confidence 47889999887742 222222222 22333333 688999997643222211
Q ss_pred CcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHccCccEEEEEEeCCc
Q 013923 184 YCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEASNRQYHVLVIIADGQ 238 (434)
Q Consensus 184 ~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~~~~Y~VLlIiTDG~ 238 (434)
.-.+..+.+......... ++|-|++...++++.+......-.-.++|||+||.
T Consensus 108 ~~~~~~~~l~~~~~~~~~--~~GgTdi~~aL~~~~~~~~~~~~~~t~vvIiSDg~ 160 (222)
T PF05762_consen 108 RRRDPEEALARLSALVQS--FGGGTDIGQALREFLRQYARPDLRRTTVVIISDGW 160 (222)
T ss_pred ccCCHHHHHHHHHhhccC--CCCccHHHHHHHHHHHHhhcccccCcEEEEEeccc
Confidence 112445555554433333 89999999999999988764322568889999994
No 103
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=93.47 E-value=0.038 Score=56.09 Aligned_cols=45 Identities=36% Similarity=0.860 Sum_probs=36.2
Q ss_pred cCCCCccCccccCCccceecC--CCCCchhhh-cCCCCCCCcCccccc
Q 013923 384 ALVEPVCPICLTNPKDMAFGC--GHTTCKDCG-TTISSCPMCREPITT 428 (434)
Q Consensus 384 ~~e~~~CpICl~~~kdv~l~C--GH~fC~~Ci-~~l~~CPlCR~~i~~ 428 (434)
..+-+.||||...+.-=.+.| ||..|..|- +....||.||.++..
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVSNKCPTCRLPIGN 92 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhhhhcccCCcccccccc
Confidence 345689999999887744545 899999998 556899999999983
No 104
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=93.37 E-value=0.018 Score=61.71 Aligned_cols=44 Identities=25% Similarity=0.631 Sum_probs=37.2
Q ss_pred CCCCccCccccCCcc-ceecCCCCCchhhhcC---------CCCCCCcCccccc
Q 013923 385 LVEPVCPICLTNPKD-MAFGCGHTTCKDCGTT---------ISSCPMCREPITT 428 (434)
Q Consensus 385 ~e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~---------l~~CPlCR~~i~~ 428 (434)
..+..|.+|.+...+ +...|.|.||+-|+.. ...||.|-..++-
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 456899999999999 8899999999999852 2689999887653
No 105
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=92.84 E-value=0.89 Score=52.35 Aligned_cols=140 Identities=16% Similarity=0.183 Sum_probs=81.0
Q ss_pred eEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHH-hhcccccCCCCCcceEeeCCCCCCCCcceecCCCCCCc
Q 013923 107 LILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISII-GRTLSPFDEDNLIPCFGFGDASTHDQYVFSFYPDNHYC 185 (434)
Q Consensus 107 livaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~I-g~vl~~yD~d~~ip~~GFGa~~~~~~~vf~~~~~~~~~ 185 (434)
+++.||-+.|=. |. +..+.-++|+... ..++ ..+..+-++.|+...... ..+.+-.
T Consensus 307 VVLVLDvSGSM~--g~------------dRL~~lkqAA~~fL~~~l---~~~DrVGLVtFsssA~vl---~pLt~It--- 363 (863)
T TIGR00868 307 VCLVLDKSGSMT--VE------------DRLKRMNQAAKLFLLQTV---EKGSWVGMVTFDSAAYIK---NELIQIT--- 363 (863)
T ss_pred EEEEEECCcccc--cc------------CHHHHHHHHHHHHHHHhC---CCCCEEEEEEECCceeEe---eccccCC---
Confidence 777899888742 11 1234445555543 2333 445689999998864321 2222111
Q ss_pred CCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHccC--ccEEEEEEeCCcccCCCCCCCCCCChhHHHHHHHHHH
Q 013923 186 HGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEASNR--QYHVLVIIADGQVTRNPDTPAGRLSPQEQATVNSIVA 263 (434)
Q Consensus 186 ~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~~~--~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~ 263 (434)
. ....++-...++ ....|-|++..-|+.|++..++... .=-++++||||+-++ ..+.++ .
T Consensus 364 -s-~~dr~aL~~~L~-~~A~GGT~I~~GL~~Alq~L~~~~~~~~~~~IILLTDGedn~------------~~~~l~---~ 425 (863)
T TIGR00868 364 -S-SAERDALTANLP-TAASGGTSICSGLKAAFQVIKKSYQSTDGSEIVLLTDGEDNT------------ISSCFE---E 425 (863)
T ss_pred -c-HHHHHHHHHhhc-cccCCCCcHHHHHHHHHHHHHhcccccCCCEEEEEeCCCCCC------------HHHHHH---H
Confidence 1 122333333444 3467899999999999998876421 123567779998653 223333 3
Q ss_pred hccCCcEEEEEecccCCccccccc
Q 013923 264 ASHYPLSIILVGVGDGPWDSVQQF 287 (434)
Q Consensus 264 AS~~PLSIIiVGVGd~~f~~m~~l 287 (434)
+....+.|-.||+|...=..|++|
T Consensus 426 lk~~gVtI~TIg~G~dad~~L~~I 449 (863)
T TIGR00868 426 VKQSGAIIHTIALGPSAAKELEEL 449 (863)
T ss_pred HHHcCCEEEEEEeCCChHHHHHHH
Confidence 444578888899997643344443
No 106
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.76 E-value=0.037 Score=56.58 Aligned_cols=43 Identities=33% Similarity=0.810 Sum_probs=31.3
Q ss_pred CCCccCccccCCc--cc---eecCCCCCchhhhcCC-----CCCCCcCccccc
Q 013923 386 VEPVCPICLTNPK--DM---AFGCGHTTCKDCGTTI-----SSCPMCREPITT 428 (434)
Q Consensus 386 e~~~CpICl~~~k--dv---~l~CGH~fC~~Ci~~l-----~~CPlCR~~i~~ 428 (434)
++..||+|++... |- --+||.+.|+-|+... -+||.||+..+.
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 3445999998653 32 2288999999998743 589999987643
No 107
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.74 E-value=0.056 Score=53.22 Aligned_cols=44 Identities=20% Similarity=0.507 Sum_probs=36.8
Q ss_pred CCCccCccccCCcc----cee-cCCCCCchhhhcCC----CCCCCcCcccccc
Q 013923 386 VEPVCPICLTNPKD----MAF-GCGHTTCKDCGTTI----SSCPMCREPITTR 429 (434)
Q Consensus 386 e~~~CpICl~~~kd----v~l-~CGH~fC~~Ci~~l----~~CPlCR~~i~~~ 429 (434)
....||||.+.+.+ +++ +|||++|.+|..++ ..||+|-.++..+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDR 272 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCccc
Confidence 56899999988877 444 99999999998865 5899999988765
No 108
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.65 E-value=0.038 Score=54.99 Aligned_cols=43 Identities=23% Similarity=0.617 Sum_probs=33.5
Q ss_pred CCCccCccccCCcc-----------ceecCCCCCchhhhcCC------CCCCCcCccccc
Q 013923 386 VEPVCPICLTNPKD-----------MAFGCGHTTCKDCGTTI------SSCPMCREPITT 428 (434)
Q Consensus 386 e~~~CpICl~~~kd-----------v~l~CGH~fC~~Ci~~l------~~CPlCR~~i~~ 428 (434)
++..|.||-..+.. -.+.|+|.|...|++.| ..||.|+..++-
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 45699999854432 35699999999999976 589999987753
No 109
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=91.90 E-value=0.052 Score=40.64 Aligned_cols=37 Identities=38% Similarity=0.971 Sum_probs=17.3
Q ss_pred cCccccCCcc--cee---cCCCCCchhhhcC-----CCCCCCcCccc
Q 013923 390 CPICLTNPKD--MAF---GCGHTTCKDCGTT-----ISSCPMCREPI 426 (434)
Q Consensus 390 CpICl~~~kd--v~l---~CGH~fC~~Ci~~-----l~~CPlCR~~i 426 (434)
||+|.+.+.. ..+ +||+.+|..|..+ -..||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 7889877632 333 7899999999653 35799999864
No 110
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=89.72 E-value=0.082 Score=40.79 Aligned_cols=36 Identities=33% Similarity=0.610 Sum_probs=23.9
Q ss_pred CCCccCccccCCcc-ce-ecCCCCCchhhhcCC------CCCCC
Q 013923 386 VEPVCPICLTNPKD-MA-FGCGHTTCKDCGTTI------SSCPM 421 (434)
Q Consensus 386 e~~~CpICl~~~kd-v~-l~CGH~fC~~Ci~~l------~~CPl 421 (434)
....|||.+..+++ +. ..|||.|.++.+..+ ..||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 45799999999999 55 499999999997642 46888
No 111
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=88.67 E-value=0.13 Score=57.63 Aligned_cols=40 Identities=30% Similarity=0.820 Sum_probs=32.7
Q ss_pred CccCccccCCcc-ceecCCCCCchhhhcCC------CCCCCcCccccc
Q 013923 388 PVCPICLTNPKD-MAFGCGHTTCKDCGTTI------SSCPMCREPITT 428 (434)
Q Consensus 388 ~~CpICl~~~kd-v~l~CGH~fC~~Ci~~l------~~CPlCR~~i~~ 428 (434)
..|.+|++ ... +...|||.||.+|+... ..||+||..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 79999999 444 66799999999998743 469999988754
No 112
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=88.22 E-value=0.2 Score=50.89 Aligned_cols=41 Identities=22% Similarity=0.601 Sum_probs=30.7
Q ss_pred CccCccccCCcc--ceecCCCCCchhhhcC--CCCCCCcCccccc
Q 013923 388 PVCPICLTNPKD--MAFGCGHTTCKDCGTT--ISSCPMCREPITT 428 (434)
Q Consensus 388 ~~CpICl~~~kd--v~l~CGH~fC~~Ci~~--l~~CPlCR~~i~~ 428 (434)
..|--|---.+. -.++|-|.||.+|+.. .+.||.|-.++.+
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDRVQR 135 (389)
T ss_pred EeecccCCcceeeecccccchhhhhhhhhcCccccCcCcccHHHH
Confidence 467777655444 5569999999999874 4799999776543
No 113
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=87.88 E-value=0.26 Score=41.16 Aligned_cols=31 Identities=23% Similarity=0.546 Sum_probs=24.9
Q ss_pred CCCCccCccccCCcc---ceecCCCCCchhhhcC
Q 013923 385 LVEPVCPICLTNPKD---MAFGCGHTTCKDCGTT 415 (434)
Q Consensus 385 ~e~~~CpICl~~~kd---v~l~CGH~fC~~Ci~~ 415 (434)
.+...|++|...+.. +.+||||.++..|+.+
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIKR 109 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeEEecccccC
Confidence 345689999988776 6679999999999753
No 114
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=87.14 E-value=0.11 Score=42.65 Aligned_cols=40 Identities=30% Similarity=0.679 Sum_probs=29.1
Q ss_pred CccCccccCCcc--cee-cCCCCCchhhhcCC-------CCCCCcCcccc
Q 013923 388 PVCPICLTNPKD--MAF-GCGHTTCKDCGTTI-------SSCPMCREPIT 427 (434)
Q Consensus 388 ~~CpICl~~~kd--v~l-~CGH~fC~~Ci~~l-------~~CPlCR~~i~ 427 (434)
..||-|.-.-.| +++ .|.|.|...|+.++ ..||+||+...
T Consensus 32 g~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 32 GCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 456666644444 444 79999999998764 58999998754
No 115
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=86.12 E-value=0.15 Score=40.72 Aligned_cols=42 Identities=31% Similarity=0.610 Sum_probs=19.7
Q ss_pred CCccCccccCCc-c----ce--e--cCCCCCchhhhcCC---------------CCCCCcCccccc
Q 013923 387 EPVCPICLTNPK-D----MA--F--GCGHTTCKDCGTTI---------------SSCPMCREPITT 428 (434)
Q Consensus 387 ~~~CpICl~~~k-d----v~--l--~CGH~fC~~Ci~~l---------------~~CPlCR~~i~~ 428 (434)
+..|.||..... + .. - .|+..|...|+..| -.||.|+.+|+-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 468999998654 2 11 1 68888999998743 259999998764
No 116
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=85.73 E-value=5.6 Score=39.76 Aligned_cols=154 Identities=15% Similarity=0.255 Sum_probs=93.6
Q ss_pred HHHHHHHHHcCCceeceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcc-cccCCCCCcceEeeCCCC
Q 013923 91 DEVISALREAGLESSNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTL-SPFDEDNLIPCFGFGDAS 169 (434)
Q Consensus 91 ~~~~~~l~~~Gl~~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl-~~yD~d~~ip~~GFGa~~ 169 (434)
++|....+ .|=...-++++||=+.|=.-. -.-+.|=-++...| ..|-.-..+-+.+|=..
T Consensus 66 ~Dlr~~~r-~~r~g~lvvfvVDASgSM~~~-----------------~Rm~aaKG~~~~lL~dAYq~RdkvavI~F~G~- 126 (261)
T COG1240 66 EDLREKIR-EGRAGNLIVFVVDASGSMAAR-----------------RRMAAAKGAALSLLRDAYQRRDKVAVIAFRGE- 126 (261)
T ss_pred HHHHHHHh-ccCcCCcEEEEEeCcccchhH-----------------HHHHHHHHHHHHHHHHHHHccceEEEEEecCC-
Confidence 44444333 333434567789988774310 11222222222222 34666677888898432
Q ss_pred CCCCcceecCCCCCCcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHcc----CccEEEEEEeCCcccCCCCC
Q 013923 170 THDQYVFSFYPDNHYCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEASN----RQYHVLVIIADGQVTRNPDT 245 (434)
Q Consensus 170 ~~~~~vf~~~~~~~~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~~----~~Y~VLlIiTDG~i~d~~~~ 245 (434)
+.++ -+.|. ..++.+ .+.+..+.-.|-|-.++-|.++.++..+.. ..-.|+|+||||..++..
T Consensus 127 --~A~l-ll~pT----~sv~~~----~~~L~~l~~GG~TPL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~-- 193 (261)
T COG1240 127 --KAEL-LLPPT----SSVELA----ERALERLPTGGKTPLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPI-- 193 (261)
T ss_pred --cceE-EeCCc----ccHHHH----HHHHHhCCCCCCCchHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCC--
Confidence 1122 11111 233333 345556778899999999999999875442 356778899999977632
Q ss_pred CCCCCChhHHHHHHHHHHhccCCcEEEEEecccCC
Q 013923 246 PAGRLSPQEQATVNSIVAASHYPLSIILVGVGDGP 280 (434)
Q Consensus 246 ~~~~~~~~~~~T~~aIv~AS~~PLSIIiVGVGd~~ 280 (434)
.+.+ +.+|.++-..+...++=+++|....+.
T Consensus 194 ---~~~~-~~e~~~~a~~~~~~g~~~lvid~e~~~ 224 (261)
T COG1240 194 ---PLGP-KAETLEAASKLRLRGIQLLVIDTEGSE 224 (261)
T ss_pred ---CCch-HHHHHHHHHHHhhcCCcEEEEecCCcc
Confidence 1222 678888888888888888998887765
No 117
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=85.43 E-value=2.4 Score=45.29 Aligned_cols=79 Identities=18% Similarity=0.230 Sum_probs=53.7
Q ss_pred CCCcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHcc-CccEEEEEEeCCcccCCCCCCCCCCChhHHHHHHH
Q 013923 182 NHYCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEASN-RQYHVLVIIADGQVTRNPDTPAGRLSPQEQATVNS 260 (434)
Q Consensus 182 ~~~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~~-~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~a 260 (434)
.+...|++++++---. +--+| |+|...|+.|++.++... .++- ||+||||.-..+ .+....++.
T Consensus 326 ~~k~~~~~e~i~fL~~----~f~GG-TD~~~~l~~al~~~k~~~~~~ad-iv~ITDg~~~~~---------~~~~~~v~e 390 (437)
T COG2425 326 YEKKIDIEELIEFLSY----VFGGG-TDITKALRSALEDLKSRELFKAD-IVVITDGEDERL---------DDFLRKVKE 390 (437)
T ss_pred cCCccCHHHHHHHHhh----hcCCC-CChHHHHHHHHHHhhcccccCCC-EEEEeccHhhhh---------hHHHHHHHH
Confidence 4456799998874333 33335 999999999999988542 2344 477799954321 245678888
Q ss_pred HHHhccCCcEEEEEe
Q 013923 261 IVAASHYPLSIILVG 275 (434)
Q Consensus 261 Iv~AS~~PLSIIiVG 275 (434)
+.++++.=+--|+||
T Consensus 391 ~~k~~~~rl~aV~I~ 405 (437)
T COG2425 391 LKKRRNARLHAVLIG 405 (437)
T ss_pred HHHHhhceEEEEEec
Confidence 888888766655554
No 118
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=85.25 E-value=0.29 Score=55.99 Aligned_cols=44 Identities=30% Similarity=0.563 Sum_probs=32.6
Q ss_pred CCCCccCccccCCc--c------ceecCCCCCchhhhcCC------CCCCCcCccccc
Q 013923 385 LVEPVCPICLTNPK--D------MAFGCGHTTCKDCGTTI------SSCPMCREPITT 428 (434)
Q Consensus 385 ~e~~~CpICl~~~k--d------v~l~CGH~fC~~Ci~~l------~~CPlCR~~i~~ 428 (434)
.....|+||..... + ..-.|.|-|...|+-+| ..||+||..|+-
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 44578999996543 2 22368889999998766 689999988753
No 119
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=84.75 E-value=2.6 Score=40.37 Aligned_cols=81 Identities=22% Similarity=0.319 Sum_probs=46.5
Q ss_pred CCccccCCCChHHHHHHHHHHHHHc--------cCcc-EEEEEEeCCcccCCCCCCCCCCChhHHHHHHHHHHhccCCcE
Q 013923 200 PHLKLSGPTSFAPIIDAAIDIVEAS--------NRQY-HVLVIIADGQVTRNPDTPAGRLSPQEQATVNSIVAASHYPLS 270 (434)
Q Consensus 200 ~~v~l~GPT~fapiI~~a~~~~~~~--------~~~Y-~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~AS~~PLS 270 (434)
|.+.-.|-|..--.|+.+++.++.. .+.| .+..+||||..+|-- ++.+++..--+++.--+-
T Consensus 71 p~L~a~GgT~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~PtD~w---------~~~~~~~~~~~~~~k~v~ 141 (207)
T COG4245 71 PILTAQGGTPLGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEPTDDW---------QAGAALVFQGERRAKSVA 141 (207)
T ss_pred CceecCCCCchHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCcchHH---------HhHHHHhhhcccccceEE
Confidence 4455668888888999998887643 1223 334566999999810 122233333344444444
Q ss_pred EEEEecccCCcccccccCC
Q 013923 271 IILVGVGDGPWDSVQQFDD 289 (434)
Q Consensus 271 IIiVGVGd~~f~~m~~lD~ 289 (434)
+..||+-+++-..++++-+
T Consensus 142 a~~~G~~~ad~~~L~qit~ 160 (207)
T COG4245 142 AFSVGVQGADNKTLNQITE 160 (207)
T ss_pred EEEecccccccHHHHHHHH
Confidence 4445544556656655554
No 120
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=82.03 E-value=0.19 Score=50.80 Aligned_cols=40 Identities=33% Similarity=0.663 Sum_probs=31.5
Q ss_pred CccCccccCCcc----ceecCCCCCchhhhcCC---------------------------CCCCCcCcccc
Q 013923 388 PVCPICLTNPKD----MAFGCGHTTCKDCGTTI---------------------------SSCPMCREPIT 427 (434)
Q Consensus 388 ~~CpICl~~~kd----v~l~CGH~fC~~Ci~~l---------------------------~~CPlCR~~i~ 427 (434)
..|.|||--+.+ ..++|-|.|...|+.+. ..||+||..|.
T Consensus 116 gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 579999977765 45699999999996521 37999999875
No 121
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.57 E-value=0.46 Score=49.94 Aligned_cols=29 Identities=28% Similarity=0.637 Sum_probs=23.2
Q ss_pred CCccCccccCCcc---ce-ecCCCCCchhhhcC
Q 013923 387 EPVCPICLTNPKD---MA-FGCGHTTCKDCGTT 415 (434)
Q Consensus 387 ~~~CpICl~~~kd---v~-l~CGH~fC~~Ci~~ 415 (434)
...|.||++...- +. ++|+|.||..|+.+
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kd 216 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKD 216 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHH
Confidence 4789999987543 44 59999999999874
No 122
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.96 E-value=0.73 Score=52.29 Aligned_cols=41 Identities=24% Similarity=0.587 Sum_probs=33.6
Q ss_pred CccCccccCCcc--ceecCCCCCchhhhcC-CCCCCCcCccccc
Q 013923 388 PVCPICLTNPKD--MAFGCGHTTCKDCGTT-ISSCPMCREPITT 428 (434)
Q Consensus 388 ~~CpICl~~~kd--v~l~CGH~fC~~Ci~~-l~~CPlCR~~i~~ 428 (434)
..|..|-..+.- |.|.|||.+...|+.+ ...||.|+....+
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e~~~~~CP~C~~e~~~ 884 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSYHQHCLEDKEDKCPKCLPELRG 884 (933)
T ss_pred eeecccCCccccceeeeecccHHHHHhhccCcccCCccchhhhh
Confidence 589999876655 7789999999999985 4789999885443
No 123
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=80.37 E-value=0.73 Score=38.15 Aligned_cols=40 Identities=23% Similarity=0.563 Sum_probs=29.1
Q ss_pred CccCccccCC---cc--cee-cCCCCCchhhhcCC----CCCCCcCcccc
Q 013923 388 PVCPICLTNP---KD--MAF-GCGHTTCKDCGTTI----SSCPMCREPIT 427 (434)
Q Consensus 388 ~~CpICl~~~---kd--v~l-~CGH~fC~~Ci~~l----~~CPlCR~~i~ 427 (434)
..|+-|.... .+ ++- .|.|.|...|+.++ ..||+||++..
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 3677777522 22 334 89999999999876 58999998754
No 124
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=79.50 E-value=0.78 Score=34.20 Aligned_cols=35 Identities=23% Similarity=0.731 Sum_probs=25.3
Q ss_pred ccCccccCCc--c-ceecCC-----CCCchhhhcCC------CCCCCcC
Q 013923 389 VCPICLTNPK--D-MAFGCG-----HTTCKDCGTTI------SSCPMCR 423 (434)
Q Consensus 389 ~CpICl~~~k--d-v~l~CG-----H~fC~~Ci~~l------~~CPlCR 423 (434)
.|.||++... + +..||. |.+...|+.+| ..||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899997222 2 556885 66899998865 4799984
No 125
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.10 E-value=0.86 Score=47.73 Aligned_cols=41 Identities=29% Similarity=0.609 Sum_probs=32.8
Q ss_pred CCCccCccccCCcc----ceecCCCCCchhhhcCC-------CCCCCcCccc
Q 013923 386 VEPVCPICLTNPKD----MAFGCGHTTCKDCGTTI-------SSCPMCREPI 426 (434)
Q Consensus 386 e~~~CpICl~~~kd----v~l~CGH~fC~~Ci~~l-------~~CPlCR~~i 426 (434)
.-+.|||=.+.-.+ |.+.|||+.|.+-+.++ ..||.|....
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 35899997766554 88999999999997743 6899997764
No 126
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=74.08 E-value=0.95 Score=33.94 Aligned_cols=43 Identities=33% Similarity=0.797 Sum_probs=22.2
Q ss_pred CccCccccCCccceecCC-CCCchhhhcC----CCCCCCcCcccccccc
Q 013923 388 PVCPICLTNPKDMAFGCG-HTTCKDCGTT----ISSCPMCREPITTRLR 431 (434)
Q Consensus 388 ~~CpICl~~~kdv~l~CG-H~fC~~Ci~~----l~~CPlCR~~i~~~i~ 431 (434)
..|.-|+-..+. ...|. |..|..|+.. ...||+|..++.++++
T Consensus 3 ~nCKsCWf~~k~-Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtkir 50 (50)
T PF03854_consen 3 YNCKSCWFANKG-LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTKIR 50 (50)
T ss_dssp ----SS-S--SS-EEE-SS-EEEHHHHHHT-SSSSEETTTTEE----S-
T ss_pred ccChhhhhcCCC-eeeecchhHHHHHHHHHhccccCCCcccCcCccccC
Confidence 458888855554 34665 7799999864 4689999999988775
No 127
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=73.54 E-value=0.89 Score=50.78 Aligned_cols=45 Identities=31% Similarity=0.679 Sum_probs=36.9
Q ss_pred CCCCccCccccCCcc-ceecCCCCCchhhhcCC-------CCCCCcCcccccc
Q 013923 385 LVEPVCPICLTNPKD-MAFGCGHTTCKDCGTTI-------SSCPMCREPITTR 429 (434)
Q Consensus 385 ~e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~l-------~~CPlCR~~i~~~ 429 (434)
...+.|+||+...++ +.+.|-|.||.-|+... ..||+|+..+..+
T Consensus 19 ~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~ 71 (684)
T KOG4362|consen 19 QKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR 71 (684)
T ss_pred hhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhh
Confidence 446799999998888 78899999999998643 5799999766543
No 128
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=70.21 E-value=13 Score=36.33 Aligned_cols=52 Identities=21% Similarity=0.439 Sum_probs=32.1
Q ss_pred cCccEEEEEEeCCcccCCCCC--CCC-CCChhHHHHHHHHHHhccCCcEEEEEeccc
Q 013923 225 NRQYHVLVIIADGQVTRNPDT--PAG-RLSPQEQATVNSIVAASHYPLSIILVGVGD 278 (434)
Q Consensus 225 ~~~Y~VLlIiTDG~i~d~~~~--~~~-~~~~~~~~T~~aIv~AS~~PLSIIiVGVGd 278 (434)
..+=-||++|+||...|..-. +.+ -|..+.+++++.|... -++-++-||||.
T Consensus 133 ~e~rkiLiViSDG~P~d~st~~~n~~~~L~~HLr~vi~~ie~~--~~Vel~aiGIg~ 187 (219)
T PF11775_consen 133 PEQRKILIVISDGAPADDSTLSANDGDYLDAHLRQVIAEIETR--SDVELIAIGIGH 187 (219)
T ss_pred CccceEEEEEeCCCcCcccccccCChHHHHHHHHHHHHHHhcc--CCcEEEEEEcCC
Confidence 344569999999998862210 111 2444556666555543 367788888886
No 129
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=69.91 E-value=1.7 Score=52.18 Aligned_cols=44 Identities=27% Similarity=0.708 Sum_probs=33.2
Q ss_pred CCCCccCccccCCcc----ceecCCCCCchhhhc-----CC---------CCCCCcCccccc
Q 013923 385 LVEPVCPICLTNPKD----MAFGCGHTTCKDCGT-----TI---------SSCPMCREPITT 428 (434)
Q Consensus 385 ~e~~~CpICl~~~kd----v~l~CGH~fC~~Ci~-----~l---------~~CPlCR~~i~~ 428 (434)
+.+..|-||++..-. +.+.|+|.|...|-. +| -.||+|..+|..
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 445799999975433 678999999999954 22 479999988754
No 130
>PHA03096 p28-like protein; Provisional
Probab=68.07 E-value=1.6 Score=44.10 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=22.3
Q ss_pred CccCccccCCcc---------ceecCCCCCchhhhcCC
Q 013923 388 PVCPICLTNPKD---------MAFGCGHTTCKDCGTTI 416 (434)
Q Consensus 388 ~~CpICl~~~kd---------v~l~CGH~fC~~Ci~~l 416 (434)
-.|.||++.... +...|-|.||..|+..|
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~w 216 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIW 216 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHH
Confidence 479999976542 33489999999998754
No 131
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.03 E-value=2.3 Score=38.62 Aligned_cols=39 Identities=36% Similarity=0.894 Sum_probs=25.2
Q ss_pred CCCCccCccccCCccceecCCCC-------CchhhhcCC--------CCCCCcCcc
Q 013923 385 LVEPVCPICLTNPKDMAFGCGHT-------TCKDCGTTI--------SSCPMCREP 425 (434)
Q Consensus 385 ~e~~~CpICl~~~kdv~l~CGH~-------fC~~Ci~~l--------~~CPlCR~~ 425 (434)
.++..|-||+.-- .+=+|||. ||..|+-+. ..|-+||..
T Consensus 63 ~ddatC~IC~KTK--FADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 63 GDDATCGICHKTK--FADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred CcCcchhhhhhcc--cccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 4667999999421 33477776 577775432 468888764
No 132
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=62.88 E-value=1.3 Score=52.31 Aligned_cols=39 Identities=38% Similarity=0.905 Sum_probs=32.9
Q ss_pred CCCccCccccCCcc--ceecCCCCCchhhhcCC----CCCCCcCc
Q 013923 386 VEPVCPICLTNPKD--MAFGCGHTTCKDCGTTI----SSCPMCRE 424 (434)
Q Consensus 386 e~~~CpICl~~~kd--v~l~CGH~fC~~Ci~~l----~~CPlCR~ 424 (434)
....|.||++...+ ..+.|||-+|+.|...+ ..||+|..
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 44699999998885 77899999999998754 68999974
No 133
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=61.67 E-value=6.1 Score=41.27 Aligned_cols=13 Identities=31% Similarity=0.828 Sum_probs=10.4
Q ss_pred CCCCCcCcccccc
Q 013923 417 SSCPMCREPITTR 429 (434)
Q Consensus 417 ~~CPlCR~~i~~~ 429 (434)
..||+||+++.-.
T Consensus 341 ~~CPtCRa~FCil 353 (358)
T PF10272_consen 341 CPCPTCRAKFCIL 353 (358)
T ss_pred CCCCCCcccceee
Confidence 5799999998643
No 134
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=61.06 E-value=27 Score=38.51 Aligned_cols=93 Identities=16% Similarity=0.215 Sum_probs=64.3
Q ss_pred ccccCCCChHHHHHHHHHHHHHccCccEEEEEEeCCcccCCCCCCCCCCChhHHHHHHHHHHhccCCcEEEEEecccCCc
Q 013923 202 LKLSGPTSFAPIIDAAIDIVEASNRQYHVLVIIADGQVTRNPDTPAGRLSPQEQATVNSIVAASHYPLSIILVGVGDGPW 281 (434)
Q Consensus 202 v~l~GPT~fapiI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~AS~~PLSIIiVGVGd~~f 281 (434)
+++.--|--...|++|.+......+.=-.|+++|||..+|. |--.|+. -.+.|.+|+.+|-+..|+++-|=|-...-
T Consensus 527 LePg~ytR~G~AIR~As~kL~~rpq~qklLivlSDGkPnd~-d~YEgr~--gIeDTr~AV~eaRk~Gi~VF~Vtld~ea~ 603 (637)
T COG4548 527 LEPGYYTRDGAAIRHASAKLMERPQRQKLLIVLSDGKPNDF-DHYEGRF--GIEDTREAVIEARKSGIEVFNVTLDREAI 603 (637)
T ss_pred cCccccccccHHHHHHHHHHhcCcccceEEEEecCCCcccc-ccccccc--chhhHHHHHHHHHhcCceEEEEEecchhh
Confidence 44444577778899988765444455677888999999984 3222333 36789999999999999999998877664
Q ss_pred ccccccCCCCCcccccceeeee
Q 013923 282 DSVQQFDDNIPQRAFDNFQFVN 303 (434)
Q Consensus 282 ~~m~~lD~~~~~r~rDnvqFV~ 303 (434)
+.+..+-+ .|..-||.
T Consensus 604 ~y~p~~fg------qngYa~V~ 619 (637)
T COG4548 604 SYLPALFG------QNGYAFVE 619 (637)
T ss_pred hhhHHHhc------cCceEEcc
Confidence 44433322 25666664
No 135
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=60.86 E-value=6.1 Score=40.54 Aligned_cols=45 Identities=7% Similarity=-0.072 Sum_probs=35.0
Q ss_pred CCccCccccCCcc-ceecCCCC-CchhhhcCC--CCCCCcCcccccccc
Q 013923 387 EPVCPICLTNPKD-MAFGCGHT-TCKDCGTTI--SSCPMCREPITTRLR 431 (434)
Q Consensus 387 ~~~CpICl~~~kd-v~l~CGH~-fC~~Ci~~l--~~CPlCR~~i~~~i~ 431 (434)
...|-+|-..... +..+|+|+ ||.+|+... ..||+|.......++
T Consensus 343 ~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~~ 391 (394)
T KOG2113|consen 343 SLKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLVP 391 (394)
T ss_pred hcccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeeee
Confidence 4689999987766 56699999 999998743 689999876555444
No 136
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.54 E-value=5.8 Score=38.96 Aligned_cols=45 Identities=24% Similarity=0.501 Sum_probs=34.9
Q ss_pred CCCccCccccCCcc---ceecCCCCCchhhhcCC------------CCCCCcCccccccc
Q 013923 386 VEPVCPICLTNPKD---MAFGCGHTTCKDCGTTI------------SSCPMCREPITTRL 430 (434)
Q Consensus 386 e~~~CpICl~~~kd---v~l~CGH~fC~~Ci~~l------------~~CPlCR~~i~~~i 430 (434)
-...|.+|-+-+.. +.+-|-|.|..+|+..+ -.||.|..+|-.-+
T Consensus 49 Y~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~ 108 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPI 108 (299)
T ss_pred CCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCc
Confidence 34579999986655 77899999999998632 48999999875543
No 137
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=53.97 E-value=4.9 Score=36.42 Aligned_cols=41 Identities=24% Similarity=0.776 Sum_probs=31.9
Q ss_pred CccCccccCCcc-cee----cCCCCCchhhhcCC-------CCCCCcCccccc
Q 013923 388 PVCPICLTNPKD-MAF----GCGHTTCKDCGTTI-------SSCPMCREPITT 428 (434)
Q Consensus 388 ~~CpICl~~~kd-v~l----~CGH~fC~~Ci~~l-------~~CPlCR~~i~~ 428 (434)
.+|-||.+...+ -.+ -||...|.-|-..+ ..||+|+..+.+
T Consensus 81 YeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 81 YECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred eeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 589999998877 222 59999999996532 689999988754
No 138
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.94 E-value=6.5 Score=41.37 Aligned_cols=30 Identities=37% Similarity=0.933 Sum_probs=22.0
Q ss_pred CCCccCccc-cCCcc----ceecCCCCCchhhhcC
Q 013923 386 VEPVCPICL-TNPKD----MAFGCGHTTCKDCGTT 415 (434)
Q Consensus 386 e~~~CpICl-~~~kd----v~l~CGH~fC~~Ci~~ 415 (434)
....|.||. +.+.. .+..|+|.||..|...
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~ 179 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQ 179 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHH
Confidence 456899999 44443 2348999999999873
No 139
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=52.93 E-value=2e+02 Score=27.00 Aligned_cols=145 Identities=15% Similarity=0.176 Sum_probs=75.1
Q ss_pred eEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc---cCCCCCcceEeeCCCCCCC-------Ccce
Q 013923 107 LILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSP---FDEDNLIPCFGFGDASTHD-------QYVF 176 (434)
Q Consensus 107 livaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~---yD~d~~ip~~GFGa~~~~~-------~~vf 176 (434)
+++.||.+.|=... . .....+.+.|++.|-.+++. ....-.+-++.||...+.. .+++
T Consensus 2 ~vflID~s~sM~~~-----------~-~~~~~~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~~~~~~~~~i~ 69 (224)
T PF03731_consen 2 TVFLIDVSPSMFEP-----------S-SESESPLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNPDEDSGYENIF 69 (224)
T ss_dssp EEEEEE-SCGGGS------------B-TTCS-HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST-TTT-STTEE
T ss_pred EEEEEECCHHHCCC-----------C-CCcchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCcccccCCCceE
Confidence 57889998764321 0 11112788888888776543 3333569999999876543 4455
Q ss_pred ecCCCCCCcCCHHHHHHHHHHhcCCccc----------cCCCChHHHHHHHHHHHHH--ccCc--cEEEEEEeCCcccCC
Q 013923 177 SFYPDNHYCHGFEEVLARYREILPHLKL----------SGPTSFAPIIDAAIDIVEA--SNRQ--YHVLVIIADGQVTRN 242 (434)
Q Consensus 177 ~~~~~~~~~~G~egvl~~Yr~~~~~v~l----------~GPT~fapiI~~a~~~~~~--~~~~--Y~VLlIiTDG~i~d~ 242 (434)
.+.+-+. .+++.+.+ +...++- .....+..++-.+..+..+ ...+ .--+++|||+.--.
T Consensus 70 ~l~~l~~--~~~~~l~~----L~~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l~Td~d~p~- 142 (224)
T PF03731_consen 70 VLQPLDP--PSAERLKE----LEELLKPGDKFENFFSGSDEGDLSDALWVASDMFRERTCKKKKNKKRIFLFTDNDGPH- 142 (224)
T ss_dssp EEEECC----BHHHHHH----HHTTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHCTTS-ECEEEEEEEES-SSTT-
T ss_pred EeecCCc--cCHHHHHH----HHHhhcccccccccCCCCCccCHHHHHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCC-
Confidence 5543222 23333322 2222221 2345677777777776653 2222 24456779874322
Q ss_pred CCCCCCCCChhHHHHHHH--HHHhccCCcEEEEEec
Q 013923 243 PDTPAGRLSPQEQATVNS--IVAASHYPLSIILVGV 276 (434)
Q Consensus 243 ~~~~~~~~~~~~~~T~~a--Iv~AS~~PLSIIiVGV 276 (434)
+ -..+.+.+++. +.+....-+.|.++.+
T Consensus 143 -----~-~~~~~~~~~~~l~~~Dl~~~~i~~~~~~l 172 (224)
T PF03731_consen 143 -----E-DDDELERIIQKLKAKDLQDNGIEIELFFL 172 (224)
T ss_dssp -----T--CCCHHHHHHHHHHHHHHHHTEEEEEEEC
T ss_pred -----C-CHHHHHHHHHhhccccchhcCcceeEeec
Confidence 1 11235666666 6667778888888888
No 140
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=52.90 E-value=2.6 Score=44.30 Aligned_cols=41 Identities=32% Similarity=0.609 Sum_probs=32.1
Q ss_pred CCCccCccccCC--cc---ceecCCCCCchhhhcC------CCCCCCcCccc
Q 013923 386 VEPVCPICLTNP--KD---MAFGCGHTTCKDCGTT------ISSCPMCREPI 426 (434)
Q Consensus 386 e~~~CpICl~~~--kd---v~l~CGH~fC~~Ci~~------l~~CPlCR~~i 426 (434)
-++.|-.|-+.. ++ .++||.|.|...|+.. ...||.||.-+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crklr 415 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLR 415 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 357899998764 33 6789999999999873 37899999543
No 141
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=52.71 E-value=25 Score=36.32 Aligned_cols=43 Identities=40% Similarity=0.962 Sum_probs=31.6
Q ss_pred CCccCccccCC--cc---ceecCCCCCchhhhcCC----CCCCCcCcccccc
Q 013923 387 EPVCPICLTNP--KD---MAFGCGHTTCKDCGTTI----SSCPMCREPITTR 429 (434)
Q Consensus 387 ~~~CpICl~~~--kd---v~l~CGH~fC~~Ci~~l----~~CPlCR~~i~~~ 429 (434)
...||+|-+.. .+ +--+|++..|..|.... ..||.||.+....
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccccC
Confidence 35799999754 23 22389999999998764 5899999776543
No 142
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=48.18 E-value=10 Score=28.33 Aligned_cols=38 Identities=26% Similarity=0.673 Sum_probs=17.6
Q ss_pred CccCccccCCcc-cee-cCCCCCchhhhc--------CCCCCCCcCcc
Q 013923 388 PVCPICLTNPKD-MAF-GCGHTTCKDCGT--------TISSCPMCREP 425 (434)
Q Consensus 388 ~~CpICl~~~kd-v~l-~CGH~fC~~Ci~--------~l~~CPlCR~~ 425 (434)
+.||+.....+. +.. .|.|.-|.+=.. ....||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 579999987776 544 899996653211 23689999864
No 143
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=46.73 E-value=5.2 Score=36.23 Aligned_cols=30 Identities=27% Similarity=0.574 Sum_probs=23.6
Q ss_pred CCccCccccCCcc----ceecCCCC------CchhhhcCC
Q 013923 387 EPVCPICLTNPKD----MAFGCGHT------TCKDCGTTI 416 (434)
Q Consensus 387 ~~~CpICl~~~kd----v~l~CGH~------fC~~Ci~~l 416 (434)
...|.||++...+ +.+.||-. ||..|+.+|
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw 65 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRW 65 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHH
Confidence 4689999976544 66688844 999999877
No 144
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=45.88 E-value=7.4 Score=39.97 Aligned_cols=42 Identities=26% Similarity=0.548 Sum_probs=32.0
Q ss_pred CCCCccCccccCCcc----ceecCCCCCchhhhcCC-------CCCCCcCccc
Q 013923 385 LVEPVCPICLTNPKD----MAFGCGHTTCKDCGTTI-------SSCPMCREPI 426 (434)
Q Consensus 385 ~e~~~CpICl~~~kd----v~l~CGH~fC~~Ci~~l-------~~CPlCR~~i 426 (434)
..-+.|||=.+...+ +.+.|||..-.+-+..+ +.||.|...-
T Consensus 334 Hs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~ 386 (396)
T COG5109 334 HSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEMS 386 (396)
T ss_pred cceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcch
Confidence 345899997766554 88899999998887643 6899997653
No 145
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=44.48 E-value=41 Score=37.54 Aligned_cols=62 Identities=24% Similarity=0.377 Sum_probs=34.8
Q ss_pred HHHHHHHHHHccCccEEEEEEeCCcccCCCCC---CCC-CCChhHHHHHHHHHHhccC-CcEEEEEecccC
Q 013923 214 IDAAIDIVEASNRQYHVLVIIADGQVTRNPDT---PAG-RLSPQEQATVNSIVAASHY-PLSIILVGVGDG 279 (434)
Q Consensus 214 I~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~---~~~-~~~~~~~~T~~aIv~AS~~-PLSIIiVGVGd~ 279 (434)
|..|.+...+...+=-||++|+||+..|- .| +.| -|-.+.++ .|.....- |+=++-||||..
T Consensus 502 l~wa~~rL~~R~e~rKiL~ViSDG~P~D~-~TlsvN~~~~l~~hLr~---vi~~~e~~~~vel~aigIg~D 568 (600)
T TIGR01651 502 LMWAHQRLIARPEQRRILMMISDGAPVDD-STLSVNPGNYLERHLRA---VIEEIETRSPVELLAIGIGHD 568 (600)
T ss_pred HHHHHHHHhcCcccceEEEEEeCCCcCCc-cccccCchhHHHHHHHH---HHHHHhccCCceEEEeecccc
Confidence 33333333334456789999999998861 11 112 23222333 33444443 788888888874
No 146
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=43.55 E-value=13 Score=34.69 Aligned_cols=43 Identities=26% Similarity=0.563 Sum_probs=31.1
Q ss_pred CCCCccCccccCCccceecCCCC-----CchhhhcCC------CCCCCcCcccc
Q 013923 385 LVEPVCPICLTNPKDMAFGCGHT-----TCKDCGTTI------SSCPMCREPIT 427 (434)
Q Consensus 385 ~e~~~CpICl~~~kdv~l~CGH~-----fC~~Ci~~l------~~CPlCR~~i~ 427 (434)
..+..|-||.+-..+...||... ...+|+++| ..|++|+.+..
T Consensus 6 ~~~~~CRIC~~~~~~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 6 LMDKCCWICKDEYDVVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCeeEecCCCCCCccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 34568999997755444576654 488998765 68999998864
No 147
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=43.00 E-value=15 Score=42.08 Aligned_cols=42 Identities=19% Similarity=0.347 Sum_probs=27.0
Q ss_pred CccCccccCCcc-ce----ecCCCCCchhhhcCC----------CCCCCcCcccccc
Q 013923 388 PVCPICLTNPKD-MA----FGCGHTTCKDCGTTI----------SSCPMCREPITTR 429 (434)
Q Consensus 388 ~~CpICl~~~kd-v~----l~CGH~fC~~Ci~~l----------~~CPlCR~~i~~~ 429 (434)
..|-+|+....| .- -.|+|.+|..|+..+ +.|+.|..-|..+
T Consensus 100 ~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sW 156 (1134)
T KOG0825|consen 100 PVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSW 156 (1134)
T ss_pred chhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhh
Confidence 455555555333 11 259999999998743 5678887666544
No 148
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.03 E-value=14 Score=37.45 Aligned_cols=30 Identities=27% Similarity=0.696 Sum_probs=23.7
Q ss_pred CCCCccCccccCCcccee-cC----CCCCchhhhc
Q 013923 385 LVEPVCPICLTNPKDMAF-GC----GHTTCKDCGT 414 (434)
Q Consensus 385 ~e~~~CpICl~~~kdv~l-~C----GH~fC~~Ci~ 414 (434)
...+.|.+|.+.+.|..| .| .|-||..|-.
T Consensus 266 ~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSR 300 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSR 300 (352)
T ss_pred CCceeehhhhhhhccCceeecCCCcccceecccCH
Confidence 445899999999999555 66 4779999954
No 149
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=39.52 E-value=34 Score=33.87 Aligned_cols=73 Identities=26% Similarity=0.442 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCCccccCCCChHHHHHH-----------HHHHH---HHccCccEEEEEEeCCcccCCCCCCCCCCChhH
Q 013923 189 EEVLARYREILPHLKLSGPTSFAPIIDA-----------AIDIV---EASNRQYHVLVIIADGQVTRNPDTPAGRLSPQE 254 (434)
Q Consensus 189 egvl~~Yr~~~~~v~l~GPT~fapiI~~-----------a~~~~---~~~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~ 254 (434)
++-|+.|++.-.+++-+.-..+.|-|+. +..+| +-.+.+|+|.+|+-||+.. |
T Consensus 89 ~eeL~~~~~~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~-------------E 155 (243)
T COG3959 89 EEELETFRRIGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELD-------------E 155 (243)
T ss_pred HHHHHHhccCCCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccc-------------c
Confidence 3456677776555554444445544432 22222 2346789999999999996 5
Q ss_pred HHHHHHHHHhccCCcEEEEE
Q 013923 255 QATVNSIVAASHYPLSIILV 274 (434)
Q Consensus 255 ~~T~~aIv~AS~~PLSIIiV 274 (434)
-++-+|+-.|+++-|.=+|+
T Consensus 156 G~~WEAam~Aah~~L~NLia 175 (243)
T COG3959 156 GQVWEAAMTAAHYKLDNLIA 175 (243)
T ss_pred ccHHHHHHHHHHhccCcEEE
Confidence 68999999999988774443
No 150
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.40 E-value=12 Score=43.20 Aligned_cols=30 Identities=27% Similarity=0.458 Sum_probs=24.3
Q ss_pred CCCCccCccccCCcc---ceecCCCCCchhhhc
Q 013923 385 LVEPVCPICLTNPKD---MAFGCGHTTCKDCGT 414 (434)
Q Consensus 385 ~e~~~CpICl~~~kd---v~l~CGH~fC~~Ci~ 414 (434)
+-+..|-+|...+.. +.++|||.|.+.|+.
T Consensus 815 ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~ 847 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLI 847 (911)
T ss_pred cCccchHHhcchhhcCcceeeeccchHHHHHHH
Confidence 445689999976544 788999999999975
No 151
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=39.04 E-value=57 Score=35.36 Aligned_cols=41 Identities=22% Similarity=0.433 Sum_probs=27.7
Q ss_pred EEEEEE-eCCcccCCCCCCCCCCChhHHHHHHHHHHhccCCcEEEE
Q 013923 229 HVLVII-ADGQVTRNPDTPAGRLSPQEQATVNSIVAASHYPLSIIL 273 (434)
Q Consensus 229 ~VLlIi-TDG~i~d~~~~~~~~~~~~~~~T~~aIv~AS~~PLSIIi 273 (434)
.|.|++ |||.|+|. +....-.-++++++.+.+. +.|.=||+
T Consensus 146 tIgivVtTDgsi~dI---~Re~y~~aEe~~i~eLk~~-~kPfiivl 187 (492)
T TIGR02836 146 TIGVVVTTDGTITDI---PREDYVEAEERVIEELKEL-NKPFIILL 187 (492)
T ss_pred cEEEEEEcCCCcccc---ccccchHHHHHHHHHHHhc-CCCEEEEE
Confidence 454444 59999873 5556666688888888755 66755544
No 152
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=38.90 E-value=2.3e+02 Score=27.37 Aligned_cols=115 Identities=25% Similarity=0.373 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHcCCceeceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCCcceEeeCCC
Q 013923 89 TLDEVISALREAGLESSNLILGIDFTKSNEWTGKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFDEDNLIPCFGFGDA 168 (434)
Q Consensus 89 ~~~~~~~~l~~~Gl~~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD~d~~ip~~GFGa~ 168 (434)
|+++|. +|.++|.+ |||+|-|.... |.+|+ +-|.. +=..| ++-++|
T Consensus 53 T~~ev~-~l~~aGad----IIAlDaT~R~R--------p~~l~----------~li~~---i~~~~-------~l~MAD- 98 (192)
T PF04131_consen 53 TLKEVD-ALAEAGAD----IIALDATDRPR--------PETLE----------ELIRE---IKEKY-------QLVMAD- 98 (192)
T ss_dssp SHHHHH-HHHHCT-S----EEEEE-SSSS---------SS-HH----------HHHHH---HHHCT-------SEEEEE-
T ss_pred CHHHHH-HHHHcCCC----EEEEecCCCCC--------CcCHH----------HHHHH---HHHhC-------cEEeee-
Confidence 567774 48889999 89999996652 23343 12222 22222 333333
Q ss_pred CCCCCcceecCCCCCCcCCHHHHHHHHHHhcC--CccccCCCChH----HHHHHHHHHHHHccCccEEEEEEeCCcccCC
Q 013923 169 STHDQYVFSFYPDNHYCHGFEEVLARYREILP--HLKLSGPTSFA----PIIDAAIDIVEASNRQYHVLVIIADGQVTRN 242 (434)
Q Consensus 169 ~~~~~~vf~~~~~~~~~~G~egvl~~Yr~~~~--~v~l~GPT~fa----piI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~ 242 (434)
|.-+|+.+++.+--+- .-+|+|-|... |=++.+.++++. +. -+|+.|.|..
T Consensus 99 ----------------ist~ee~~~A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~-~~-----pvIaEGri~t- 155 (192)
T PF04131_consen 99 ----------------ISTLEEAINAAELGFDIIGTTLSGYTPYTKGDGPDFELVRELVQA-DV-----PVIAEGRIHT- 155 (192)
T ss_dssp -----------------SSHHHHHHHHHTT-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT-TS-----EEEEESS--S-
T ss_pred ----------------cCCHHHHHHHHHcCCCEEEcccccCCCCCCCCCCCHHHHHHHHhC-CC-----cEeecCCCCC-
Confidence 5678888887765433 23677766554 767777776654 21 2679999985
Q ss_pred CCCCCCCCChhHHHHHHHHHHhccCCcEEEEEe
Q 013923 243 PDTPAGRLSPQEQATVNSIVAASHYPLSIILVG 275 (434)
Q Consensus 243 ~~~~~~~~~~~~~~T~~aIv~AS~~PLSIIiVG 275 (434)
.++.++++. +.-.-|+||
T Consensus 156 -----------pe~a~~al~----~GA~aVVVG 173 (192)
T PF04131_consen 156 -----------PEQAAKALE----LGAHAVVVG 173 (192)
T ss_dssp -----------HHHHHHHHH----TT-SEEEE-
T ss_pred -----------HHHHHHHHh----cCCeEEEEC
Confidence 455555554 444456665
No 153
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=38.36 E-value=63 Score=31.72 Aligned_cols=57 Identities=19% Similarity=0.335 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHccCccEEEEEEeCCcccCCCCCCCCCCChhHHHHHHHHHHhccCCcE-EEEEecccC
Q 013923 212 PIIDAAIDIVEASNRQYHVLVIIADGQVTRNPDTPAGRLSPQEQATVNSIVAASHYPLS-IILVGVGDG 279 (434)
Q Consensus 212 piI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~AS~~PLS-IIiVGVGd~ 279 (434)
|++..+++.++++++.-|++=+++||.|+- ..+-....|.-|.+.-+. |.|=-+.||
T Consensus 14 ~~l~~~~~~~k~~~~~lHl~GLlSdGGVHS-----------h~~Hl~al~~~a~~~gv~~V~vH~f~DG 71 (223)
T PF06415_consen 14 PVLLEAIEHAKKNGGRLHLMGLLSDGGVHS-----------HIDHLFALIKLAKKQGVKKVYVHAFTDG 71 (223)
T ss_dssp HHHHHHHHHHCCTT--EEEEEEESS-SSS-------------HHHHHHHHHHHHHTT-SEEEEEEEE-S
T ss_pred HHHHHHHHHHHhcCCeEEEEEEecCCCccc-----------cHHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 788999999998888999999999999985 256666666667666554 333344443
No 154
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=38.32 E-value=5 Score=32.48 Aligned_cols=36 Identities=33% Similarity=0.873 Sum_probs=15.2
Q ss_pred CccCccccCCccceecCCCCCchhhhcCC---CCCCCcCccc
Q 013923 388 PVCPICLTNPKDMAFGCGHTTCKDCGTTI---SSCPMCREPI 426 (434)
Q Consensus 388 ~~CpICl~~~kdv~l~CGH~fC~~Ci~~l---~~CPlCR~~i 426 (434)
..||.|...+.- .. ++..|..|..+. ..||-|..++
T Consensus 2 ~~CP~C~~~L~~--~~-~~~~C~~C~~~~~~~a~CPdC~~~L 40 (70)
T PF07191_consen 2 NTCPKCQQELEW--QG-GHYHCEACQKDYKKEAFCPDCGQPL 40 (70)
T ss_dssp -B-SSS-SBEEE--ET-TEEEETTT--EEEEEEE-TTT-SB-
T ss_pred CcCCCCCCccEE--eC-CEEECccccccceecccCCCcccHH
Confidence 468888865432 11 555666665532 3566666554
No 155
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=37.99 E-value=1.1e+02 Score=30.77 Aligned_cols=83 Identities=17% Similarity=0.348 Sum_probs=49.9
Q ss_pred CcCCHHHHHHHHHHhcCCcccc-------CCCChHHHHHHHHHHHHHcc--CccEEEEEEeCC--cccCCCCCCCCCCCh
Q 013923 184 YCHGFEEVLARYREILPHLKLS-------GPTSFAPIIDAAIDIVEASN--RQYHVLVIIADG--QVTRNPDTPAGRLSP 252 (434)
Q Consensus 184 ~~~G~egvl~~Yr~~~~~v~l~-------GPT~fapiI~~a~~~~~~~~--~~Y~VLlIiTDG--~i~d~~~~~~~~~~~ 252 (434)
.-.|+.+++..-++..|.+.+. |-..-..|+ .|++.+.+.+ ..|=|++| +-| .+.|+ ...
T Consensus 24 ~gAa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~-~al~~~~~~~~~~~~Dviii-~RGGGs~eDL-------~~F 94 (319)
T PF02601_consen 24 TGAAIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIV-SALRKANEMGQADDFDVIII-IRGGGSIEDL-------WAF 94 (319)
T ss_pred chHHHHHHHHHHHHhCCCcEEEEEeccccccchHHHHH-HHHHHHHhccccccccEEEE-ecCCCChHHh-------ccc
Confidence 3457778777777776654332 333333344 4555554432 35777555 555 44453 234
Q ss_pred hHHHHHHHHHHhccCCcEEEEEecccC
Q 013923 253 QEQATVNSIVAASHYPLSIILVGVGDG 279 (434)
Q Consensus 253 ~~~~T~~aIv~AS~~PLSIIiVGVGd~ 279 (434)
|.++..+||. +|..| ||.|||-+
T Consensus 95 N~e~varai~-~~~~P---visaIGHe 117 (319)
T PF02601_consen 95 NDEEVARAIA-ASPIP---VISAIGHE 117 (319)
T ss_pred ChHHHHHHHH-hCCCC---EEEecCCC
Confidence 6788888887 45688 89999965
No 156
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=36.70 E-value=7.8 Score=39.13 Aligned_cols=36 Identities=31% Similarity=0.732 Sum_probs=28.3
Q ss_pred ccCccccCCcc-----ceecCCCCCchhhhcCC----CCCCCcCc
Q 013923 389 VCPICLTNPKD-----MAFGCGHTTCKDCGTTI----SSCPMCRE 424 (434)
Q Consensus 389 ~CpICl~~~kd-----v~l~CGH~fC~~Ci~~l----~~CPlCR~ 424 (434)
.||||.+.... -.++|||.....|.... -.||+|-.
T Consensus 160 ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 160 NCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 49999987654 34599999888887632 68999988
No 157
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.02 E-value=20 Score=35.87 Aligned_cols=43 Identities=21% Similarity=0.432 Sum_probs=32.2
Q ss_pred CCCccCccccCCcc----cee-cCCCCCchhhhcCC--CCCCCcCccccc
Q 013923 386 VEPVCPICLTNPKD----MAF-GCGHTTCKDCGTTI--SSCPMCREPITT 428 (434)
Q Consensus 386 e~~~CpICl~~~kd----v~l-~CGH~fC~~Ci~~l--~~CPlCR~~i~~ 428 (434)
..+.|||---.+.. +++ +|||+|-..-++.. ..|++|.+....
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeikas~C~~C~a~y~~ 159 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKASVCHVCGAAYQE 159 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhhhccccccCCcccc
Confidence 45899987654433 344 99999998888765 689999998754
No 158
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=35.59 E-value=45 Score=33.98 Aligned_cols=152 Identities=18% Similarity=0.292 Sum_probs=73.9
Q ss_pred cccCCHHHHHHHHHHcCCceeceEEEEecCCCCCC---CCCCCCCCCCccccC-CCCCHHHHHHHHHhhcccccCCCCCc
Q 013923 85 DNYNTLDEVISALREAGLESSNLILGIDFTKSNEW---TGKYSFNRKSLHAIS-NIRNPYEQAISIIGRTLSPFDEDNLI 160 (434)
Q Consensus 85 ~~~~~~~~~~~~l~~~Gl~~~nlivaIDFT~SN~~---~g~~~~~~~SLH~i~-~~~N~Ye~AI~~Ig~vl~~yD~d~~i 160 (434)
+...-||=|.+|++++|++- .+.+|||+.+|--+ .|+..+..++...-. ...+ =++-|.-..+++.. +
T Consensus 78 ~~eeaL~ll~~Ai~~aGy~~-~v~ialD~AAsefyd~~~gkY~~~~~~~~~~~~~~~s-~delid~y~~li~~------Y 149 (295)
T PF00113_consen 78 DNEEALDLLMEAIKEAGYEP-DVAIALDVAASEFYDEEDGKYDLEFKSKEKDPSRYKS-SDELIDYYKDLIKK------Y 149 (295)
T ss_dssp SHHHHHHHHHHHHHHTT-TT-TBEEEEE--GGGGEETETTEEETTTTSSSSTGGGEEE-HHHHHHHHHHHHHH------S
T ss_pred chhHHHHHHHHHHHHccccc-eeeeeccccHHHhhhccCCeEEEeecccccccccccC-HHHHHHHHHHHHHh------c
Confidence 34455677788889999995 99999999999755 444333222200000 0001 12233333333333 3
Q ss_pred ceEeeCCCCCCCCcceecCCCCCCcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHccCccEEEEEEeCCccc
Q 013923 161 PCFGFGDASTHDQYVFSFYPDNHYCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEASNRQYHVLVIIADGQVT 240 (434)
Q Consensus 161 p~~GFGa~~~~~~~vf~~~~~~~~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~~~~Y~VLlIiTDG~i~ 240 (434)
|+...-| +|.. ..++++.+.=.+.-.++++-|-..|.--.+.+.+-+++.. -. .++|-=.||.
T Consensus 150 PIvsIED---------pf~e-----dD~e~w~~lt~~~g~~~~iVGDDl~vTn~~ri~~~i~~~~--~n-a~llK~NQig 212 (295)
T PF00113_consen 150 PIVSIED---------PFDE-----DDWEGWAKLTKRLGDKIQIVGDDLFVTNPKRIKKGIEKKA--CN-ALLLKPNQIG 212 (295)
T ss_dssp -EEEEES---------SS-T-----T-HHHHHHHHHHHTTTSEEEESTTTTT-HHHHHHHHHCT----S-EEEE-HHHHS
T ss_pred CeEEEEc---------cccc-----cchHHHHHHHHhhhcceeeecccccccchhhhhccchhhh--cc-chhhhhhhhH
Confidence 3333322 1222 2355554444444457888886554333333322222210 11 1344444554
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhccCCcEEEE
Q 013923 241 RNPDTPAGRLSPQEQATVNSIVAASHYPLSIIL 273 (434)
Q Consensus 241 d~~~~~~~~~~~~~~~T~~aIv~AS~~PLSIIi 273 (434)
- .-+|++++..|...-..+|+
T Consensus 213 T------------vte~lea~~~a~~~g~~~vv 233 (295)
T PF00113_consen 213 T------------VTETLEAVKLAKSAGWGVVV 233 (295)
T ss_dssp S------------HHHHHHHHHHHHHTT-EEEE
T ss_pred H------------HHHHHHHHHHHHHCCceeec
Confidence 3 45899999999888877766
No 159
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=35.28 E-value=12 Score=32.59 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=19.8
Q ss_pred cCCCCCchhhhcCC----CCCCCcCcc
Q 013923 403 GCGHTTCKDCGTTI----SSCPMCREP 425 (434)
Q Consensus 403 ~CGH~fC~~Ci~~l----~~CPlCR~~ 425 (434)
-|.|.|..-|+.++ ..||+|.+.
T Consensus 80 ~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 79999999998865 689999765
No 160
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=35.04 E-value=1.3e+02 Score=32.00 Aligned_cols=73 Identities=15% Similarity=0.178 Sum_probs=46.5
Q ss_pred CHHHHHHHHHH----hcCCccccCCCChHHHHHHHHHHHHHccCccEEEEEEeCCcccCCCCCCCCCCChhHHHHHHHHH
Q 013923 187 GFEEVLARYRE----ILPHLKLSGPTSFAPIIDAAIDIVEASNRQYHVLVIIADGQVTRNPDTPAGRLSPQEQATVNSIV 262 (434)
Q Consensus 187 G~egvl~~Yr~----~~~~v~l~GPT~fapiI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv 262 (434)
++.+.+..++. .+-.|++.- -++.-+++++....++.|-.- +.+|.+||... +.++..+
T Consensus 248 ~~~~~~~~~~~~~~~~~~GVR~DS-Gd~~~~~~kvr~~ld~~G~~~-~~Ii~Sdg~ld--------------e~~i~~l- 310 (405)
T COG1488 248 AFLNAIKVAKALGDKRLDGVRLDS-GDPRELSEKVRAHLDKLGYDP-VKIIVSDGLLD--------------EKIIALL- 310 (405)
T ss_pred HHHHhHHHHHhcccccceEEECCC-CCHHHHHHHHHHHHHHcCCCc-eEEEEeCCcch--------------HHHHHHH-
Confidence 34444444443 344555543 677778888887777765444 88888999775 2444444
Q ss_pred HhccCCcEEEEEeccc
Q 013923 263 AASHYPLSIILVGVGD 278 (434)
Q Consensus 263 ~AS~~PLSIIiVGVGd 278 (434)
++...+ +..-|||.
T Consensus 311 ~~~g~~--~d~FGvGT 324 (405)
T COG1488 311 RAFGAR--NDAFGVGT 324 (405)
T ss_pred HHhCCC--ccEeccch
Confidence 446666 88888885
No 161
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=34.34 E-value=13 Score=39.25 Aligned_cols=21 Identities=14% Similarity=0.305 Sum_probs=16.2
Q ss_pred hcccccCCCCCcceEeeCCCC
Q 013923 149 RTLSPFDEDNLIPCFGFGDAS 169 (434)
Q Consensus 149 ~vl~~yD~d~~ip~~GFGa~~ 169 (434)
.|+..|-.|..-++|=-|..+
T Consensus 84 ~VvVEY~~D~~tDMFQIGRSt 104 (416)
T PF04710_consen 84 TVVVEYTHDPDTDMFQIGRST 104 (416)
T ss_dssp EEEEEEEEETTEEEEEEES--
T ss_pred eeeeeeecCCCcchhhhccCC
Confidence 488888888889999888753
No 162
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=34.11 E-value=1.2e+02 Score=30.58 Aligned_cols=66 Identities=17% Similarity=0.331 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHccCccEEEEEEe--CCcccCCCCCCCCCCChhHHHHHHHHHHhccCC----cEEEEEecccCCccccc
Q 013923 212 PIIDAAIDIVEASNRQYHVLVIIA--DGQVTRNPDTPAGRLSPQEQATVNSIVAASHYP----LSIILVGVGDGPWDSVQ 285 (434)
Q Consensus 212 piI~~a~~~~~~~~~~Y~VLlIiT--DG~i~d~~~~~~~~~~~~~~~T~~aIv~AS~~P----LSIIiVGVGd~~f~~m~ 285 (434)
-.|+..++..++......|.++=| -|.-. ..+.++||..|...+ .=+||||=|+|.++.|-
T Consensus 26 Aa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A-------------~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~ 92 (319)
T PF02601_consen 26 AAIQDFLRTLKRRNPIVEIILYPASVQGEGA-------------AASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLW 92 (319)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEeccccccch-------------HHHHHHHHHHHHhccccccccEEEEecCCCChHHhc
Confidence 455666666665433344444332 23222 578999999998765 89999999999999999
Q ss_pred ccCCC
Q 013923 286 QFDDN 290 (434)
Q Consensus 286 ~lD~~ 290 (434)
-||+.
T Consensus 93 ~FN~e 97 (319)
T PF02601_consen 93 AFNDE 97 (319)
T ss_pred ccChH
Confidence 99973
No 163
>PLN00191 enolase
Probab=33.93 E-value=3.1e+02 Score=29.77 Aligned_cols=70 Identities=21% Similarity=0.346 Sum_probs=42.5
Q ss_pred cccCCHHHHHHHHHHcCCceeceEEEEecCCCCCCC--CCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC
Q 013923 85 DNYNTLDEVISALREAGLESSNLILGIDFTKSNEWT--GKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFD 155 (434)
Q Consensus 85 ~~~~~~~~~~~~l~~~Gl~~~nlivaIDFT~SN~~~--g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD 155 (434)
+.-.-|+-|.+|++++|++ -++.+|||+-+|--|. |+..+..++-..-+...-..+++|+.+-.++..|+
T Consensus 241 ~~~eal~ll~eAi~~ag~~-~~i~i~lD~Aase~~~~~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~ 312 (457)
T PLN00191 241 DNKEGLELLKEAIEKAGYT-GKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYP 312 (457)
T ss_pred CHHHHHHHHHHHHHHcCCC-CceEEEeehhhhhhcccCCceEeeccccCCCcccccCHHHHHHHHHHHhhcCC
Confidence 3445567788888899998 5799999999985442 22211100000000112366888888888877665
No 164
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.29 E-value=17 Score=40.71 Aligned_cols=24 Identities=38% Similarity=1.043 Sum_probs=19.5
Q ss_pred ceecCCCCCchhhhcCC--CCCCCcCc
Q 013923 400 MAFGCGHTTCKDCGTTI--SSCPMCRE 424 (434)
Q Consensus 400 v~l~CGH~fC~~Ci~~l--~~CPlCR~ 424 (434)
+.+.|||+.|..|+..+ ..|| |..
T Consensus 29 vsl~cghtic~~c~~~lyn~scp-~~~ 54 (861)
T KOG3161|consen 29 VSLQCGHTICGHCVQLLYNASCP-TKR 54 (861)
T ss_pred ccccccchHHHHHHHhHhhccCC-CCc
Confidence 67899999999999876 5788 543
No 165
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=31.90 E-value=21 Score=36.17 Aligned_cols=27 Identities=33% Similarity=0.683 Sum_probs=19.6
Q ss_pred cCCCCCchhhhcCC--------CCCCCcCcccccc
Q 013923 403 GCGHTTCKDCGTTI--------SSCPMCREPITTR 429 (434)
Q Consensus 403 ~CGH~fC~~Ci~~l--------~~CPlCR~~i~~~ 429 (434)
--.|.||..|+.+. ..||.|+...-.+
T Consensus 108 ~~~~RFCg~CG~~~~~~~~g~~~~C~~cg~~~fPR 142 (279)
T COG2816 108 YRSHRFCGRCGTKTYPREGGWARVCPKCGHEHFPR 142 (279)
T ss_pred HhhCcCCCCCCCcCccccCceeeeCCCCCCccCCC
Confidence 56788898898754 5799888775443
No 166
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=31.08 E-value=20 Score=22.63 Aligned_cols=9 Identities=44% Similarity=1.191 Sum_probs=4.5
Q ss_pred CCCCCcCcc
Q 013923 417 SSCPMCREP 425 (434)
Q Consensus 417 ~~CPlCR~~ 425 (434)
..||.|..+
T Consensus 14 ~fC~~CG~~ 22 (23)
T PF13240_consen 14 KFCPNCGTP 22 (23)
T ss_pred cchhhhCCc
Confidence 345555543
No 167
>PRK04023 DNA polymerase II large subunit; Validated
Probab=31.07 E-value=48 Score=39.17 Aligned_cols=43 Identities=26% Similarity=0.565 Sum_probs=30.6
Q ss_pred CCCccCccccCCcc-ceecCCCC-----CchhhhcCC--CCCCCcCccccc
Q 013923 386 VEPVCPICLTNPKD-MAFGCGHT-----TCKDCGTTI--SSCPMCREPITT 428 (434)
Q Consensus 386 e~~~CpICl~~~kd-v~l~CGH~-----fC~~Ci~~l--~~CPlCR~~i~~ 428 (434)
....|+-|-..... ..-.||.. ||.+|.... ..||-|......
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~~~~~y~CPKCG~El~~ 675 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGIEVEEDECEKCGREPTP 675 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCCCcceeCccccCcCCCCcCCCCCCCCCc
Confidence 45689999876533 33358853 899997754 579999888754
No 168
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=30.89 E-value=15 Score=36.91 Aligned_cols=47 Identities=28% Similarity=0.578 Sum_probs=22.6
Q ss_pred CCCCccCccccCCcc-ceec-----CCCCCchhhhcCC----CCCCCcCcccccccc
Q 013923 385 LVEPVCPICLTNPKD-MAFG-----CGHTTCKDCGTTI----SSCPMCREPITTRLR 431 (434)
Q Consensus 385 ~e~~~CpICl~~~kd-v~l~-----CGH~fC~~Ci~~l----~~CPlCR~~i~~~i~ 431 (434)
.+...||||-..+.- +... -.|.+|.-|...| ..||.|...-...+.
T Consensus 170 w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~ 226 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTDHEKLE 226 (290)
T ss_dssp TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---SS-EEE
T ss_pred ccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCCCccee
Confidence 455799999988766 3322 2355899998766 579999776544443
No 169
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=29.70 E-value=2.5e+02 Score=29.67 Aligned_cols=60 Identities=17% Similarity=0.255 Sum_probs=39.4
Q ss_pred HHHHHHHHHHcCCce-eceEEEEecCCCCCCCCCCCCCCCCccc--cCCCCCHHHHHHHHHhhcccccC
Q 013923 90 LDEVISALREAGLES-SNLILGIDFTKSNEWTGKYSFNRKSLHA--ISNIRNPYEQAISIIGRTLSPFD 155 (434)
Q Consensus 90 ~~~~~~~l~~~Gl~~-~nlivaIDFT~SN~~~g~~~~~~~SLH~--i~~~~N~Ye~AI~~Ig~vl~~yD 155 (434)
|+-|.+|++++|++- -++.++||+-+|--|... .-+| ..+..-.-++||+.+.++++.|+
T Consensus 216 l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~------~y~~~~~~~~~~t~~eai~~~~~l~e~~~ 278 (408)
T cd03313 216 LDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEG------KYVYDSDEGKKLTSEELIDYYKELVKKYP 278 (408)
T ss_pred HHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccC------cceeccCCCcccCHHHHHHHHHHHHHhCC
Confidence 455888899999881 279999999888544211 1112 11222344889998888888776
No 170
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=29.17 E-value=37 Score=34.88 Aligned_cols=39 Identities=23% Similarity=0.657 Sum_probs=27.1
Q ss_pred CCCccCccccCCcc-ce-e--cCC--CCCchhhhcCC----CCCCCcCc
Q 013923 386 VEPVCPICLTNPKD-MA-F--GCG--HTTCKDCGTTI----SSCPMCRE 424 (434)
Q Consensus 386 e~~~CpICl~~~kd-v~-l--~CG--H~fC~~Ci~~l----~~CPlCR~ 424 (434)
....||||-..+.- +. + .=| +..|.-|...| ..||.|..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 45799999988765 32 2 223 34788898877 47999976
No 171
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.91 E-value=15 Score=37.41 Aligned_cols=13 Identities=38% Similarity=1.048 Sum_probs=10.7
Q ss_pred CCCCCcCcccccc
Q 013923 417 SSCPMCREPITTR 429 (434)
Q Consensus 417 ~~CPlCR~~i~~~ 429 (434)
..||+||+.+.-+
T Consensus 355 ~~cp~cr~~fci~ 367 (381)
T KOG3899|consen 355 AQCPTCRKNFCIR 367 (381)
T ss_pred CCCcchhhceEEe
Confidence 6899999988654
No 172
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=28.77 E-value=35 Score=26.57 Aligned_cols=24 Identities=38% Similarity=0.881 Sum_probs=20.4
Q ss_pred CCchhhhcCC--CCCCCcCccccccc
Q 013923 407 TTCKDCGTTI--SSCPMCREPITTRL 430 (434)
Q Consensus 407 ~fC~~Ci~~l--~~CPlCR~~i~~~i 430 (434)
+||.+|.... ..||-|...+..|.
T Consensus 30 TFC~~C~e~~l~~~CPNCgGelv~RP 55 (57)
T PF06906_consen 30 TFCADCAETMLNGVCPNCGGELVRRP 55 (57)
T ss_pred cccHHHHHHHhcCcCcCCCCccccCC
Confidence 4999999876 68999999887764
No 173
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=28.61 E-value=3.2e+02 Score=33.00 Aligned_cols=129 Identities=12% Similarity=0.198 Sum_probs=81.9
Q ss_pred HHHHHHhhcccccCCCCCcceEeeCCCCCCCCcceecCCCCCCcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHH
Q 013923 142 QAISIIGRTLSPFDEDNLIPCFGFGDASTHDQYVFSFYPDNHYCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIV 221 (434)
Q Consensus 142 ~AI~~Ig~vl~~yD~d~~ip~~GFGa~~~~~~~vf~~~~~~~~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~ 221 (434)
-|-..+..+|.-+-++..+-..-|+-.......||. ++-+++--...+..++.+..++..|-++|.-+.+.|.+..
T Consensus 245 lak~tv~~iLdtLs~~Dfvni~tf~~~~~~v~pc~~----~~lvqAt~~nk~~~~~~i~~l~~k~~a~~~~~~e~aF~lL 320 (1104)
T KOG2353|consen 245 LAKQTVNEILDTLSDNDFVNILTFNSEVNPVSPCFN----GTLVQATMRNKKVFKEAIETLDAKGIANYTAALEYAFSLL 320 (1104)
T ss_pred HHHHHHHHHHHhcccCCeEEEEeeccccCccccccc----CceeecchHHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 344455556666666777777788765444444422 3344444456667777888888999999999999998875
Q ss_pred HHc---c------CccEEEEEEeCCcccCCCCCCCCCCChhHHHHHHHHHHhc-cCCcEEEEEecccCCcccccc
Q 013923 222 EAS---N------RQYHVLVIIADGQVTRNPDTPAGRLSPQEQATVNSIVAAS-HYPLSIILVGVGDGPWDSVQQ 286 (434)
Q Consensus 222 ~~~---~------~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~AS-~~PLSIIiVGVGd~~f~~m~~ 286 (434)
... + .=+.+.++||||...+ -++..+.-..-. ..-++=.+||.+..+|+.++-
T Consensus 321 ~~~n~s~~~~~~~~C~~~iml~tdG~~~~------------~~~If~~yn~~~~~Vrvftflig~~~~~~~~~~w 383 (1104)
T KOG2353|consen 321 RDYNDSRANTQRSPCNQAIMLITDGVDEN------------AKEIFEKYNWPDKKVRVFTFLIGDEVYDLDEIQW 383 (1104)
T ss_pred HHhccccccccccccceeeEEeecCCccc------------HHHHHHhhccCCCceEEEEEEecccccccccchh
Confidence 432 1 1267888999998875 334444333321 234555677777777766443
No 174
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=28.31 E-value=1.4e+02 Score=26.67 Aligned_cols=68 Identities=25% Similarity=0.372 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHcCCceeceEEEEecCCCC-------CCC-----CCC-----CCCCCCccccCCCCCHH-HHHHHHHhh
Q 013923 88 NTLDEVISALREAGLESSNLILGIDFTKSN-------EWT-----GKY-----SFNRKSLHAISNIRNPY-EQAISIIGR 149 (434)
Q Consensus 88 ~~~~~~~~~l~~~Gl~~~nlivaIDFT~SN-------~~~-----g~~-----~~~~~SLH~i~~~~N~Y-e~AI~~Ig~ 149 (434)
.-|.|+++|+++.|+. +++=+||+.-+ +|. |++ ...+. .|..-. ..+| +.++..|-+
T Consensus 44 Dllge~v~a~h~~Gir---v~ay~~~~~d~~~~~~HPeW~~~~~~G~~~~~~~~~~~~-~~~~c~-ns~Y~e~~~~~i~E 118 (132)
T PF14871_consen 44 DLLGEQVEACHERGIR---VPAYFDFSWDEDAAERHPEWFVRDADGRPMRGERFGYPG-WYTCCL-NSPYREFLLEQIRE 118 (132)
T ss_pred CHHHHHHHHHHHCCCE---EEEEEeeecChHHHHhCCceeeECCCCCCcCCCCcCCCC-ceecCC-CccHHHHHHHHHHH
Confidence 5679999999999976 77888888432 232 321 11111 222221 2334 677888888
Q ss_pred cccccCCCCCc
Q 013923 150 TLSPFDEDNLI 160 (434)
Q Consensus 150 vl~~yD~d~~i 160 (434)
+|..|+-|+.|
T Consensus 119 i~~~y~~DGiF 129 (132)
T PF14871_consen 119 ILDRYDVDGIF 129 (132)
T ss_pred HHHcCCCCEEE
Confidence 99999988754
No 175
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=28.16 E-value=24 Score=40.74 Aligned_cols=44 Identities=25% Similarity=0.412 Sum_probs=33.2
Q ss_pred CCCccCccccCCcc---cee--cCCCCCchhhhcCC-----------CCCCCcCcccccc
Q 013923 386 VEPVCPICLTNPKD---MAF--GCGHTTCKDCGTTI-----------SSCPMCREPITTR 429 (434)
Q Consensus 386 e~~~CpICl~~~kd---v~l--~CGH~fC~~Ci~~l-----------~~CPlCR~~i~~~ 429 (434)
....|.||.+..+- +.. .|-|+|...||++| +.||.|+....+.
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~~~ 249 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSKTV 249 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhccC
Confidence 45799999998765 222 68899999999865 6899998554433
No 176
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=27.96 E-value=32 Score=29.19 Aligned_cols=36 Identities=31% Similarity=0.698 Sum_probs=29.1
Q ss_pred CCccCccccCCccceecCCCCCchhhhcCCCCCCCcCccc
Q 013923 387 EPVCPICLTNPKDMAFGCGHTTCKDCGTTISSCPMCREPI 426 (434)
Q Consensus 387 ~~~CpICl~~~kdv~l~CGH~fC~~Ci~~l~~CPlCR~~i 426 (434)
...|.+|-... -.=||.+|..|+-..-.|.+|...|
T Consensus 44 ~~~C~~CK~~v----~q~g~~YCq~CAYkkGiCamCGKki 79 (90)
T PF10235_consen 44 SSKCKICKTKV----HQPGAKYCQTCAYKKGICAMCGKKI 79 (90)
T ss_pred Ccccccccccc----ccCCCccChhhhcccCcccccCCee
Confidence 45899998532 2447889999999999999999887
No 177
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=27.75 E-value=14 Score=24.85 Aligned_cols=20 Identities=35% Similarity=1.007 Sum_probs=11.6
Q ss_pred CCCCchhhhcCC--------CCCCCcCc
Q 013923 405 GHTTCKDCGTTI--------SSCPMCRE 424 (434)
Q Consensus 405 GH~fC~~Ci~~l--------~~CPlCR~ 424 (434)
.|.||..|+... ..||.|..
T Consensus 2 ~~rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 2 NHRFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TTSB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred CCcccCcCCccccCCCCcCEeECCCCcC
Confidence 378999997642 57888865
No 178
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.56 E-value=20 Score=32.31 Aligned_cols=23 Identities=35% Similarity=1.021 Sum_probs=16.9
Q ss_pred CCchhhhcC-CCCCCCcCcccccc
Q 013923 407 TTCKDCGTT-ISSCPMCREPITTR 429 (434)
Q Consensus 407 ~fC~~Ci~~-l~~CPlCR~~i~~~ 429 (434)
.||.+|... ...||+|..+|...
T Consensus 29 afcskcgeati~qcp~csasirgd 52 (160)
T COG4306 29 AFCSKCGEATITQCPICSASIRGD 52 (160)
T ss_pred HHHhhhchHHHhcCCccCCccccc
Confidence 478888764 46788888887653
No 179
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=26.33 E-value=2.1e+02 Score=30.81 Aligned_cols=70 Identities=24% Similarity=0.407 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHccCccEEEEEEeCCcccCCCCCCCCCCChhHHHHHHHHHHhccCCcEEEEEe---cccCCccc
Q 013923 211 APIIDAAIDIVEASNRQYHVLVIIADGQVTRNPDTPAGRLSPQEQATVNSIVAASHYPLSIILVG---VGDGPWDS 283 (434)
Q Consensus 211 apiI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~AS~~PLSIIiVG---VGd~~f~~ 283 (434)
.-||+.|++.+++.+ ..||++-|-.||+...+. .|---.|....+..|.+.-.+|..-||.| .|-.+|..
T Consensus 23 p~VieAAl~~a~~~~--~pvLiEAT~NQVnq~GGY-TGmtP~dF~~~V~~iA~~~gf~~~~iiLggDHlGPn~Wq~ 95 (420)
T TIGR02810 23 PLVLEAAIRRARASG--TPVLIEATSNQVNQFGGY-TGMTPADFRDFVETIADRIGFPRDRLILGGDHLGPNPWQH 95 (420)
T ss_pred HHHHHHHHHHHhhcC--CcEEEEeccccccccCCc-CCCCHHHHHHHHHHHHHHcCCChhcEEeecCCCCCccccC
Confidence 458999999998763 688888899999864222 34445678899999999999999877777 56666874
No 180
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=26.29 E-value=2e+02 Score=31.03 Aligned_cols=70 Identities=19% Similarity=0.364 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHccCccEEEEEEeCCcccCCCCCCCCCCChhHHHHHHHHHHhccCCcEEEEEe---cccCCccc
Q 013923 211 APIIDAAIDIVEASNRQYHVLVIIADGQVTRNPDTPAGRLSPQEQATVNSIVAASHYPLSIILVG---VGDGPWDS 283 (434)
Q Consensus 211 apiI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~AS~~PLSIIiVG---VGd~~f~~ 283 (434)
.-||+.|++.+++.+ ..||++-|-.||+...+. .|---.|....+..|.+.-.+|..-||.| .|-.+|..
T Consensus 27 p~VieAAl~~a~~~~--~pvLiEAT~NQVnq~GGY-TGmtP~dF~~~V~~iA~~~gf~~~~iiLGGDHLGPn~Wq~ 99 (426)
T PRK15458 27 PLVLEAAIRYALAND--SPLLIEATSNQVDQFGGY-TGMTPADFRGFVCQLADSLNFPQEALILGGDHLGPNRWQN 99 (426)
T ss_pred HHHHHHHHHHHhhcC--CcEEEEeccccccccCCc-CCCCHHHHHHHHHHHHHHcCCChhhEEeecCCCCCccccC
Confidence 458999999998764 688888899999864222 44445678899999999999999877777 56666874
No 181
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.75 E-value=32 Score=36.69 Aligned_cols=29 Identities=34% Similarity=0.866 Sum_probs=23.9
Q ss_pred CCCccCccccCCcc--ceecCCCCCchhhhc
Q 013923 386 VEPVCPICLTNPKD--MAFGCGHTTCKDCGT 414 (434)
Q Consensus 386 e~~~CpICl~~~kd--v~l~CGH~fC~~Ci~ 414 (434)
....|-||.+.... +.+.|||.||..|+.
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~ 99 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHPFCPPCWT 99 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcHHHHHHHH
Confidence 35689999988874 455999999999976
No 182
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.85 E-value=35 Score=34.18 Aligned_cols=30 Identities=13% Similarity=0.054 Sum_probs=26.0
Q ss_pred CCCCccCccccCCcc-ceecCCCCCchhhhc
Q 013923 385 LVEPVCPICLTNPKD-MAFGCGHTTCKDCGT 414 (434)
Q Consensus 385 ~e~~~CpICl~~~kd-v~l~CGH~fC~~Ci~ 414 (434)
.+-..|.+||....+ |..+=||.||++||-
T Consensus 41 K~FdcCsLtLqPc~dPvit~~GylfdrEaIL 71 (303)
T KOG3039|consen 41 KPFDCCSLTLQPCRDPVITPDGYLFDREAIL 71 (303)
T ss_pred CCcceeeeecccccCCccCCCCeeeeHHHHH
Confidence 344678999999999 889999999999974
No 183
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=24.67 E-value=1.2e+02 Score=31.03 Aligned_cols=14 Identities=14% Similarity=0.071 Sum_probs=5.3
Q ss_pred ccCCCChHHHHHHH
Q 013923 204 LSGPTSFAPIIDAA 217 (434)
Q Consensus 204 l~GPT~fapiI~~a 217 (434)
+.|++.+....+.+
T Consensus 28 v~~~~~~~~~~~~v 41 (349)
T cd08550 28 VGGKTVLKKSRPRF 41 (349)
T ss_pred EEChHHHHHHHHHH
Confidence 33444333333333
No 184
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=24.12 E-value=2.4e+02 Score=30.39 Aligned_cols=71 Identities=23% Similarity=0.322 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHccCccEEEEEEeCCcccCCCCCCCCCCChhHHHHHHHHHHhccCCcEEEEEe---cccCCcccc
Q 013923 211 APIIDAAIDIVEASNRQYHVLVIIADGQVTRNPDTPAGRLSPQEQATVNSIVAASHYPLSIILVG---VGDGPWDSV 284 (434)
Q Consensus 211 apiI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~AS~~PLSIIiVG---VGd~~f~~m 284 (434)
.-||+.|++.+++.+ ..||++-|-.||+...+. .|---.|....+..|.+.-.+|..-||.| .|-.+|...
T Consensus 24 p~VieAAl~~a~~~~--~pvLiEAT~NQVdq~GGY-TGmtP~dF~~~V~~iA~~~gf~~~~iiLggDHlGPn~Wq~~ 97 (421)
T PRK15052 24 PLVIEAALAFDLNST--RKVLIEATSNQVNQFGGY-TGMTPADFREFVYGIADKVGFPRERIILGGDHLGPNCWQQE 97 (421)
T ss_pred HHHHHHHHHHHhhcC--CcEEEEeccccccccCCc-CCCCHHHHHHHHHHHHHHcCCChhcEEeecCCCCCccccCC
Confidence 458999999988753 688888899999864222 34445578889999999999999877777 455568765
No 185
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.69 E-value=34 Score=36.03 Aligned_cols=30 Identities=33% Similarity=0.674 Sum_probs=20.7
Q ss_pred CCccCccccCCc---c---ceecCCCCCchhhhcCC
Q 013923 387 EPVCPICLTNPK---D---MAFGCGHTTCKDCGTTI 416 (434)
Q Consensus 387 ~~~CpICl~~~k---d---v~l~CGH~fC~~Ci~~l 416 (434)
-..||.|..... - |+=.|||.||..|..++
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~ 341 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDW 341 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcch
Confidence 467888886532 1 33368999999998655
No 186
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=23.17 E-value=86 Score=28.89 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=22.6
Q ss_pred ChhHHHHHHHHHHhccCCcEEEEEe
Q 013923 251 SPQEQATVNSIVAASHYPLSIILVG 275 (434)
Q Consensus 251 ~~~~~~T~~aIv~AS~~PLSIIiVG 275 (434)
|+.|++.++.|..++..|..|+|.|
T Consensus 5 s~~m~~~~~~~~~~a~~~~pVlI~G 29 (168)
T PF00158_consen 5 SPAMKRLREQAKRAASSDLPVLITG 29 (168)
T ss_dssp SHHHHHHHHHHHHHTTSTS-EEEEC
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEEc
Confidence 5779999999999999999999998
No 187
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=22.78 E-value=89 Score=28.61 Aligned_cols=34 Identities=18% Similarity=0.137 Sum_probs=28.4
Q ss_pred cccCCHHHHHHHHHHcCCceeceEEEEecCCCCC
Q 013923 85 DNYNTLDEVISALREAGLESSNLILGIDFTKSNE 118 (434)
Q Consensus 85 ~~~~~~~~~~~~l~~~Gl~~~nlivaIDFT~SN~ 118 (434)
+.-.|+.++.+.|+++|.+.+...+.+|++...|
T Consensus 120 tTG~Tl~~a~~~L~~~Ga~~v~~~~l~~~~~~~g 153 (169)
T TIGR01090 120 ATGGTAEATDELIRKLGGEVVEAAFLIELKDLNG 153 (169)
T ss_pred cchHHHHHHHHHHHHcCCEEEEEEEEEEccccCh
Confidence 3445589999999999999999999999987554
No 188
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.70 E-value=22 Score=33.04 Aligned_cols=25 Identities=40% Similarity=0.986 Sum_probs=19.8
Q ss_pred CCCCchhhhcC-CCCCCCcCcccccc
Q 013923 405 GHTTCKDCGTT-ISSCPMCREPITTR 429 (434)
Q Consensus 405 GH~fC~~Ci~~-l~~CPlCR~~i~~~ 429 (434)
.+.||.+|+.. ...||-|..+|...
T Consensus 27 ~~~fC~kCG~~tI~~Cp~C~~~IrG~ 52 (158)
T PF10083_consen 27 REKFCSKCGAKTITSCPNCSTPIRGD 52 (158)
T ss_pred HHHHHHHhhHHHHHHCcCCCCCCCCc
Confidence 35599999875 47899999998764
No 189
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.59 E-value=32 Score=35.21 Aligned_cols=40 Identities=25% Similarity=0.667 Sum_probs=28.2
Q ss_pred CCCccCccccCCcc-----ceecCCCCCchhhhc---CCCCCCCcCcc
Q 013923 386 VEPVCPICLTNPKD-----MAFGCGHTTCKDCGT---TISSCPMCREP 425 (434)
Q Consensus 386 e~~~CpICl~~~kd-----v~l~CGH~fC~~Ci~---~l~~CPlCR~~ 425 (434)
+...|..|-+.+.+ ....|--.||..|-. .++.|-.||..
T Consensus 43 ~~p~ckacg~~f~~~~~k~~c~dckk~fc~tcs~v~~~lr~c~~c~r~ 90 (350)
T KOG4275|consen 43 QAPHCKACGEEFEDAQSKSDCEDCKKEFCATCSRVSISLRTCTSCRRV 90 (350)
T ss_pred ccchhhhhchhHhhhhhhhhhhhhhHHHHHHHHHhcccchhhhHHHHH
Confidence 34489999877665 334677779999964 45788888754
No 190
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=22.50 E-value=75 Score=38.71 Aligned_cols=69 Identities=20% Similarity=0.332 Sum_probs=47.6
Q ss_pred CcceEeeCCCCCCCCcceecCCCCCCcCCHHHHHHHHHHhcCCccccCCC-----ChHHHHHHHHHH-HHHccCccEEEE
Q 013923 159 LIPCFGFGDASTHDQYVFSFYPDNHYCHGFEEVLARYREILPHLKLSGPT-----SFAPIIDAAIDI-VEASNRQYHVLV 232 (434)
Q Consensus 159 ~ip~~GFGa~~~~~~~vf~~~~~~~~~~G~egvl~~Yr~~~~~v~l~GPT-----~fapiI~~a~~~-~~~~~~~Y~VLl 232 (434)
.||+|||-.. .+-+-..++.+-..|-+.+++||+.||- +|.-.|-++|.- .+++ +.-.-|
T Consensus 2147 e~PaYglQ~T------------~~vP~dSies~A~~yirqirkvQP~GPYrl~GYSyG~~l~f~ma~~Lqe~--~~~~~l 2212 (2376)
T KOG1202|consen 2147 EIPAYGLQCT------------EAVPLDSIESLAAYYIRQIRKVQPEGPYRLAGYSYGACLAFEMASQLQEQ--QSPAPL 2212 (2376)
T ss_pred CCcchhhhcc------------ccCCcchHHHHHHHHHHHHHhcCCCCCeeeeccchhHHHHHHHHHHHHhh--cCCCcE
Confidence 4788887432 1223457899999999999999999994 566666665543 3332 234448
Q ss_pred EEeCCcccC
Q 013923 233 IIADGQVTR 241 (434)
Q Consensus 233 IiTDG~i~d 241 (434)
|+-||..+-
T Consensus 2213 illDGspty 2221 (2376)
T KOG1202|consen 2213 ILLDGSPTY 2221 (2376)
T ss_pred EEecCchHH
Confidence 999998874
No 191
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=22.16 E-value=54 Score=21.40 Aligned_cols=10 Identities=30% Similarity=0.753 Sum_probs=5.1
Q ss_pred ccCccccCCc
Q 013923 389 VCPICLTNPK 398 (434)
Q Consensus 389 ~CpICl~~~k 398 (434)
.||-|.....
T Consensus 2 ~CP~C~~~V~ 11 (26)
T PF10571_consen 2 TCPECGAEVP 11 (26)
T ss_pred cCCCCcCCch
Confidence 3566654443
No 192
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=22.15 E-value=46 Score=37.42 Aligned_cols=40 Identities=25% Similarity=0.563 Sum_probs=28.5
Q ss_pred cCCCCccCccccCCccceecCCCCCch--hhhcC-----------CCCCCCcCccc
Q 013923 384 ALVEPVCPICLTNPKDMAFGCGHTTCK--DCGTT-----------ISSCPMCREPI 426 (434)
Q Consensus 384 ~~e~~~CpICl~~~kdv~l~CGH~fC~--~Ci~~-----------l~~CPlCR~~i 426 (434)
..-.+.||++.... .++|.+..|. .|... .+.||+|.+.+
T Consensus 303 ~~vSL~CPl~~~Rm---~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~ 355 (636)
T KOG2169|consen 303 LRVSLNCPLSKMRM---SLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAA 355 (636)
T ss_pred ceeEecCCccccee---ecCCcccccccceecchhhhHHhccCCCeeeCccCCccc
Confidence 44568999998544 5777777777 77542 36899998765
No 193
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=22.09 E-value=3.6e+02 Score=25.40 Aligned_cols=38 Identities=13% Similarity=0.205 Sum_probs=26.3
Q ss_pred CCccccC--CCChHHHHHHHHHHHHHccCccEEEEEEeCCccc
Q 013923 200 PHLKLSG--PTSFAPIIDAAIDIVEASNRQYHVLVIIADGQVT 240 (434)
Q Consensus 200 ~~v~l~G--PT~fapiI~~a~~~~~~~~~~Y~VLlIiTDG~i~ 240 (434)
..|.|+| |+.-.+.+..+++.+++.+ .. +.|.|.|-..
T Consensus 67 ~~I~~~GGEPll~~~~~~~li~~~~~~g--~~-~~i~TNG~~~ 106 (235)
T TIGR02493 67 GGVTFSGGEPLLQPEFLSELFKACKELG--IH-TCLDTSGFLG 106 (235)
T ss_pred CeEEEeCcccccCHHHHHHHHHHHHHCC--CC-EEEEcCCCCC
Confidence 3588887 8887787878888887653 22 3567999543
No 194
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=21.98 E-value=2.2e+02 Score=30.10 Aligned_cols=36 Identities=22% Similarity=0.394 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhccCCcEEEEEecccCCcccccccCC
Q 013923 254 EQATVNSIVAASHYPLSIILVGVGDGPWDSVQQFDD 289 (434)
Q Consensus 254 ~~~T~~aIv~AS~~PLSIIiVGVGd~~f~~m~~lD~ 289 (434)
..+.++||..+....+=+||||=|+|.++.|--||+
T Consensus 178 ~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~ 213 (438)
T PRK00286 178 AASIVAAIERANARGEDVLIVARGGGSLEDLWAFND 213 (438)
T ss_pred HHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCc
Confidence 457777777777655677888888888888877776
No 195
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=21.97 E-value=53 Score=33.67 Aligned_cols=41 Identities=29% Similarity=0.652 Sum_probs=28.3
Q ss_pred CCCCccCccccCCcc-ceec----CC--CCCchhhhcCC----CCCCCcCcc
Q 013923 385 LVEPVCPICLTNPKD-MAFG----CG--HTTCKDCGTTI----SSCPMCREP 425 (434)
Q Consensus 385 ~e~~~CpICl~~~kd-v~l~----CG--H~fC~~Ci~~l----~~CPlCR~~ 425 (434)
+....||||-..+.- +... =| +..|.-|...| ..||.|...
T Consensus 182 ~~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 182 ESRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 345699999988765 2221 23 44799998877 479999764
No 196
>PRK00077 eno enolase; Provisional
Probab=21.51 E-value=6.8e+02 Score=26.62 Aligned_cols=60 Identities=22% Similarity=0.433 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHcCCce-eceEEEEecCCCCCCC-CCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC
Q 013923 88 NTLDEVISALREAGLES-SNLILGIDFTKSNEWT-GKYSFNRKSLHAISNIRNPYEQAISIIGRTLSPFD 155 (434)
Q Consensus 88 ~~~~~~~~~l~~~Gl~~-~nlivaIDFT~SN~~~-g~~~~~~~SLH~i~~~~N~Ye~AI~~Ig~vl~~yD 155 (434)
.-++-|.+|++++|++- -++.++||+.+|--|. ++..+ .+..=..++++..+.++++.|+
T Consensus 217 e~l~~lreAi~~ag~~~G~di~l~lD~aas~~~~~~~y~~--------~~~~~s~~e~~~~~~~l~e~y~ 278 (425)
T PRK00077 217 EALDLILEAIEKAGYKPGEDIALALDCAASEFYKDGKYVL--------EGEGLTSEEMIDYLAELVDKYP 278 (425)
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEEehhhhhcccCCeeec--------cCCcCCHHHHHHHHHHHHhhCC
Confidence 34566677788888872 3699999999884331 11111 1111244788888888888776
No 197
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=21.44 E-value=1e+02 Score=30.49 Aligned_cols=175 Identities=20% Similarity=0.418 Sum_probs=102.6
Q ss_pred ccccCCHHHHHHHHHHcCCc-----eeceEEEEecCCCCCCCCCCCCCCCCccccC-C---CCCHHHHHHHHHhhccccc
Q 013923 84 ADNYNTLDEVISALREAGLE-----SSNLILGIDFTKSNEWTGKYSFNRKSLHAIS-N---IRNPYEQAISIIGRTLSPF 154 (434)
Q Consensus 84 ~~~~~~~~~~~~~l~~~Gl~-----~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~-~---~~N~Ye~AI~~Ig~vl~~y 154 (434)
+..+.|--+...-|+..|.+ ++++|=|+.|-+--+.-.+.+.+=++|- |+ + ..|+|++++++|-..+-+.
T Consensus 56 gi~~dTP~~aL~klk~~gy~eviiQ~lhiIpG~EyEklvr~V~~~~~dF~~lk-ig~PlLy~k~DYe~~v~aik~~~ppl 134 (265)
T COG4822 56 GIDFDTPIQALNKLKDQGYEEVIIQPLHIIPGIEYEKLVREVNKYSNDFKRLK-IGRPLLYYKNDYEICVEAIKDQIPPL 134 (265)
T ss_pred CcccCCHHHHHHHHHHccchheeeeeeeecCchHHHHHHHHHHHHhhhhheee-cCCceeechhhHHHHHHHHHHhcCCc
Confidence 45688888999999988865 4566667766541100000001112332 22 1 3599999999999999999
Q ss_pred CCCCCcceEeeCCCCCCCCcceecCCCCCCcCCHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHccC-ccEE-EE
Q 013923 155 DEDNLIPCFGFGDASTHDQYVFSFYPDNHYCHGFEEVLARYREILPHLKLSGPTSFAPIIDAAIDIVEASNR-QYHV-LV 232 (434)
Q Consensus 155 D~d~~ip~~GFGa~~~~~~~vf~~~~~~~~~~G~egvl~~Yr~~~~~v~l~GPT~fapiI~~a~~~~~~~~~-~Y~V-Ll 232 (434)
..|...=..|=|....-.. .-.=++-++..|+- -.|.+. -+.=-|-+..+++..++++- .-++ -|
T Consensus 135 ~k~e~~vlmgHGt~h~s~~----------~YacLd~~~~~~~f--~~v~v~-~ve~yP~~d~vi~~l~~~~~~~v~L~Pl 201 (265)
T COG4822 135 NKDEILVLMGHGTDHHSNA----------AYACLDHVLDEYGF--DNVFVA-AVEGYPLVDTVIEYLRKNGIKEVHLIPL 201 (265)
T ss_pred CcCeEEEEEecCCCccHHH----------HHHHHHHHHHhcCC--CceEEE-EecCCCcHHHHHHHHHHcCCceEEEeee
Confidence 9998888888887532111 01123344443321 111111 11113566777777776542 2222 24
Q ss_pred EEeCC--cccCCCCCCCCCCChhHHHHHHHHHHhccCCcEEEEEecccCC
Q 013923 233 IIADG--QVTRNPDTPAGRLSPQEQATVNSIVAASHYPLSIILVGVGDGP 280 (434)
Q Consensus 233 IiTDG--~i~d~~~~~~~~~~~~~~~T~~aIv~AS~~PLSIIiVGVGd~~ 280 (434)
.++-| .+.||. .|-+.+-..|-++..++.-..+=|+|.-+
T Consensus 202 MlvAG~Ha~nDMa--------sddedswk~il~~~G~~v~~~l~GLGE~~ 243 (265)
T COG4822 202 MLVAGDHAKNDMA--------SDDEDSWKNILEKNGFKVEVYLHGLGENP 243 (265)
T ss_pred EEeechhhhhhhc--------ccchHHHHHHHHhCCceeEEEeecCCCcH
Confidence 45555 555532 23347777888888999999999999754
No 198
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=21.16 E-value=1.8e+02 Score=25.09 Aligned_cols=43 Identities=26% Similarity=0.437 Sum_probs=27.1
Q ss_pred EEEEeCCcccCCCCCCCCCCChhHHHHHHHHHHhccCCcEEEEEecccC
Q 013923 231 LVIIADGQVTRNPDTPAGRLSPQEQATVNSIVAASHYPLSIILVGVGDG 279 (434)
Q Consensus 231 LlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~AS~~PLSIIiVGVGd~ 279 (434)
++|+.||.+.++.-....+|++ +..+.+... ..-|+|||.|..
T Consensus 21 viv~p~~~~~~w~~~~~~~l~~---e~l~~l~~~---~peiliiGTG~~ 63 (109)
T cd05560 21 LIVTPDELITDWPVARFEDLTA---AHFEALLAL---QPEVILLGTGER 63 (109)
T ss_pred EEEECCceeeccccCCcccCCH---HHHHHHHhc---CCCEEEEecCCC
Confidence 3555666666554445556655 555555543 247999999986
No 199
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=21.10 E-value=48 Score=36.04 Aligned_cols=39 Identities=28% Similarity=0.637 Sum_probs=20.8
Q ss_pred CCccCccccCCcc-ceecCCCCCchhhhcCCCCCCCcCcccccc
Q 013923 387 EPVCPICLTNPKD-MAFGCGHTTCKDCGTTISSCPMCREPITTR 429 (434)
Q Consensus 387 ~~~CpICl~~~kd-v~l~CGH~fC~~Ci~~l~~CPlCR~~i~~~ 429 (434)
-.-||-||+.... .+...++ .|.+..+.||+|..++..+
T Consensus 26 ~~yCp~CL~~~p~~e~~~~~n----rC~r~Cf~CP~C~~~L~~~ 65 (483)
T PF05502_consen 26 SYYCPNCLFEVPSSEARSEKN----RCSRNCFDCPICFSPLSVR 65 (483)
T ss_pred eeECccccccCChhhheeccc----eeccccccCCCCCCcceeE
Confidence 3578888865543 2222222 1333346678887776543
No 200
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=20.87 E-value=6e+02 Score=23.74 Aligned_cols=61 Identities=21% Similarity=0.311 Sum_probs=30.7
Q ss_pred CccccCCCChHHHHHHHHHHHHHccCccEEEEEE-eCCcccCCCCCCCCCCChhHHHHHHHHHHhccCCcEEEEEecccC
Q 013923 201 HLKLSGPTSFAPIIDAAIDIVEASNRQYHVLVII-ADGQVTRNPDTPAGRLSPQEQATVNSIVAASHYPLSIILVGVGDG 279 (434)
Q Consensus 201 ~v~l~GPT~fapiI~~a~~~~~~~~~~Y~VLlIi-TDG~i~d~~~~~~~~~~~~~~~T~~aIv~AS~~PLSIIiVGVGd~ 279 (434)
.|-|-|-+- .+++.+++..++. |.-|-|. .+|-.++ .++++.++.|.++. =-|++||+|.-
T Consensus 50 ~vfllG~~~--~v~~~~~~~l~~~---yP~l~i~g~~g~f~~----------~~~~~i~~~I~~s~---~dil~VglG~P 111 (177)
T TIGR00696 50 PIFLYGGKP--DVLQQLKVKLIKE---YPKLKIVGAFGPLEP----------EERKAALAKIARSG---AGIVFVGLGCP 111 (177)
T ss_pred eEEEECCCH--HHHHHHHHHHHHH---CCCCEEEEECCCCCh----------HHHHHHHHHHHHcC---CCEEEEEcCCc
Confidence 344445442 3566666655543 4332221 2555532 12345566665532 45888888853
No 201
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=20.50 E-value=66 Score=38.92 Aligned_cols=42 Identities=36% Similarity=0.866 Sum_probs=29.3
Q ss_pred CCccCccccCCcc-ceecCCCCC-----chhhhcCC-------CCCCCcCccccc
Q 013923 387 EPVCPICLTNPKD-MAFGCGHTT-----CKDCGTTI-------SSCPMCREPITT 428 (434)
Q Consensus 387 ~~~CpICl~~~kd-v~l~CGH~f-----C~~Ci~~l-------~~CPlCR~~i~~ 428 (434)
...||-|-..... ..-.||... |..|.... ..||.|..++..
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~ 721 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTP 721 (1337)
T ss_pred EEECCCCCCccccccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccc
Confidence 3789999975433 333688664 88887643 379999887654
Done!